BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048766
         (525 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359495958|ref|XP_003635122.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g47460-like [Vitis vinifera]
 gi|297744381|emb|CBI37355.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/522 (68%), Positives = 431/522 (82%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y L HL+RAS++LG   + QQLH YIL+SGF SNVFVSTAL+ FY +I SL DAH +
Sbjct: 77  PNAYALLHLVRASTNLGLIPFGQQLHSYILRSGFGSNVFVSTALLNFYIRIESLKDAHNV 136

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           FVEIP+PSVVSWNSLISGY  +G++R AL LF++LERS+I ADA+SFT+ALA CG L  L
Sbjct: 137 FVEIPEPSVVSWNSLISGYAHAGQFRAALGLFLKLERSDICADAFSFTAALATCGHLSLL 196

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG +IHSKIVK  LE  VV+ANCL+DMYGKCG V++AI VF  +IDKDIISWN+VI+AS
Sbjct: 197 RLGESIHSKIVKSGLEWSVVVANCLVDMYGKCGYVQEAIRVFDSIIDKDIISWNTVISAS 256

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           ARN  LE AF +L ++P PDTISYNE+INGIAQFG+IEDAI ILSSMPSPNSSSWNSI+T
Sbjct: 257 ARNRKLEQAFSYLRQMPEPDTISYNELINGIAQFGNIEDAIQILSSMPSPNSSSWNSIIT 316

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GYVNR+   EAL  F +MQSKD+ MD +TFS++LSGIAGL+AL WG+LIH C IK GLD 
Sbjct: 317 GYVNRDLSWEALDFFSKMQSKDIEMDRFTFSSILSGIAGLAALKWGVLIHCCTIKCGLDE 376

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           SIVV SAL+DMYSKCGQV+ A+ +F+SL RKNLVTWNAMI+G+A NG+ T+VI+LF+QLK
Sbjct: 377 SIVVGSALIDMYSKCGQVKNAEMLFQSLPRKNLVTWNAMISGFAHNGNFTEVIKLFKQLK 436

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
           T RDL+PD +TFLNVL ACSH  IP     +YFESM KD+GI+PT EHCCSMIRLMGQ+G
Sbjct: 437 TERDLKPDGITFLNVLLACSHNQIPLQVAIQYFESMIKDHGIEPTAEHCCSMIRLMGQRG 496

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
           EVWRA+RMI ELGF S G+VWR+LL A GAC DLDVA ++AA+VI+LEG +++VYVM+ N
Sbjct: 497 EVWRAERMIYELGFSSCGLVWRSLLGACGACGDLDVAEVAAAQVIELEGHNEFVYVMMSN 556

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAHSS 522
           +Y  +G W   SV+R  MRERG+RK AGCSWIEVENV   SS
Sbjct: 557 MYACYGKWGDVSVVRKLMRERGVRKGAGCSWIEVENVIPASS 598



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 113/237 (47%), Gaps = 9/237 (3%)

Query: 224 LSSMPSPNSSSWNSI---LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
           +S      S +W+++   LT   NR  +  +    G + S   P + Y    ++     L
Sbjct: 35  ISPQKEGESEAWSNLTWALTQGGNRTEIALS-EASGVINSGTKP-NAYALLHLVRASTNL 92

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
             + +G  +HS +++ G  +++ V++ALL+ Y +   ++ A ++F  +   ++V+WN++I
Sbjct: 93  GLIPFGQQLHSYILRSGFGSNVFVSTALLNFYIRIESLKDAHNVFVEIPEPSVVSWNSLI 152

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           +GYA  G     + LF +L+   D+  D+ +F   LA C H  +   ++ E   S     
Sbjct: 153 SGYAHAGQFRAALGLFLKLER-SDICADAFSFTAALATCGH--LSLLRLGESIHSKIVKS 209

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
           G++ +V     ++ + G+ G V  A R+   +      + W  ++SAS     L+ A
Sbjct: 210 GLEWSVVVANCLVDMYGKCGYVQEAIRVFDSI-IDKDIISWNTVISASARNRKLEQA 265


>gi|147773503|emb|CAN66782.1| hypothetical protein VITISV_013509 [Vitis vinifera]
          Length = 625

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/522 (68%), Positives = 430/522 (82%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y L HL+RAS++LG   + QQLH YIL+SGF SNVFVSTAL+ FY +I SL DAH +
Sbjct: 101 PNAYALLHLVRASTNLGLIPFGQQLHSYILRSGFGSNVFVSTALLNFYIRIESLKDAHNV 160

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           FVEIP+PSVVSWNSLISGY  +G++R AL LF++LERS+I ADA+SFT+ALA CG L  L
Sbjct: 161 FVEIPEPSVVSWNSLISGYAHAGQFRAALGLFLKLERSDICADAFSFTAALATCGHLSLL 220

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG +IHSKIVK  LE  VV+ANCL+DMYGKCG V++AI VF  +IDKDIISWN+VI+AS
Sbjct: 221 RLGESIHSKIVKSGLEWSVVVANCLVDMYGKCGYVQEAIRVFDSIIDKDIISWNTVISAS 280

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           ARN  LE AF +L ++P PDTISYNE+INGIAQFG+ EDAI ILSSMPSPNSSSWNSI+T
Sbjct: 281 ARNRKLEQAFSYLRQMPEPDTISYNELINGIAQFGNXEDAIQILSSMPSPNSSSWNSIIT 340

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GYVNR+   EAL  F +MQSKD+ MD +TFS++LSGIAGL+AL WG+LIH C IK GLD 
Sbjct: 341 GYVNRDLSWEALDFFSKMQSKDIEMDRFTFSSILSGIAGLAALKWGVLIHCCTIKCGLDE 400

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           SIVV SAL+DMYSKCGQV+ A+ +F+SL RKNLVTWNAMI+G+A NG+ T+VI+LF+QLK
Sbjct: 401 SIVVGSALIDMYSKCGQVKNAEMLFQSLPRKNLVTWNAMISGFAHNGNFTEVIKLFKQLK 460

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
           T RDL+PD +TFLNVL ACSH  IP     +YFESM KD+GI+PT EHCCSMIRLMGQ+G
Sbjct: 461 TERDLKPDGITFLNVLLACSHNQIPLQVAIQYFESMIKDHGIEPTAEHCCSMIRLMGQRG 520

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
           EVWRA+RMI ELGF S G+VWR+LL A GAC DLDVA ++AA+VI+LEG +++VYVM+ N
Sbjct: 521 EVWRAERMIYELGFSSCGLVWRSLLGACGACGDLDVAEVAAAQVIELEGHNEFVYVMMSN 580

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAHSS 522
           +Y  +G W   SV+R  MRERG+RK AGCSWIEVENV   SS
Sbjct: 581 MYACYGKWGDVSVVRKLMRERGVRKGAGCSWIEVENVIPASS 622



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 114/237 (48%), Gaps = 9/237 (3%)

Query: 224 LSSMPSPNSSSWNSI---LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
           L ++    S +W+++   LT   NR  +  +    G + S   P + Y    ++     L
Sbjct: 59  LLALSEGESEAWSNLTWALTQGGNRTEIALS-EASGVINSGTKP-NAYALLHLVRASTNL 116

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
             + +G  +HS +++ G  +++ V++ALL+ Y +   ++ A ++F  +   ++V+WN++I
Sbjct: 117 GLIPFGQQLHSYILRSGFGSNVFVSTALLNFYIRIESLKDAHNVFVEIPEPSVVSWNSLI 176

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           +GYA  G     + LF +L+   D+  D+ +F   LA C H  +   ++ E   S     
Sbjct: 177 SGYAHAGQFRAALGLFLKLER-SDICADAFSFTAALATCGH--LSLLRLGESIHSKIVKS 233

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
           G++ +V     ++ + G+ G V  A R+   +      + W  ++SAS     L+ A
Sbjct: 234 GLEWSVVVANCLVDMYGKCGYVQEAIRVFDSI-IDKDIISWNTVISASARNRKLEQA 289


>gi|357482055|ref|XP_003611313.1| hypothetical protein MTR_5g012660 [Medicago truncatula]
 gi|355512648|gb|AES94271.1| hypothetical protein MTR_5g012660 [Medicago truncatula]
          Length = 519

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/514 (61%), Positives = 405/514 (78%), Gaps = 1/514 (0%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSG-FLSNVFVSTALMGFYRKINSLADAHKM 60
           N   L  L+R ++DL +  + QQ+H Y ++SG F +N++VST L+ FY K++    AH +
Sbjct: 4   NALALVDLIRTATDLCFHKFGQQIHSYAIRSGYFHANIYVSTTLIKFYVKMHLFTHAHNL 63

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           FVEIPQP+VVSWN+LISGYV +G+++KAL+LF +LERS+I ADA+SFTSA+ AC QL  L
Sbjct: 64  FVEIPQPNVVSWNTLISGYVHAGQFKKALSLFTKLERSQICADAFSFTSAMVACAQLSLL 123

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG +IHSK VK  ++   V+ANCLIDMYGKCGSVE A+ +F ++ DKD+ISWNSVIAA 
Sbjct: 124 KLGSSIHSKTVKLGMDNNTVVANCLIDMYGKCGSVERAVRIFSDIADKDVISWNSVIAAC 183

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           A NGN+ L F FL  +PNPD +SYN +INGIAQ G IEDA+ ILS+MP PNSSSWNS++T
Sbjct: 184 ANNGNIGLGFKFLQLMPNPDVVSYNGLINGIAQAGKIEDAVRILSTMPCPNSSSWNSVIT 243

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           G+VNR+RVPEAL +FG+M  K++ +DE+TFS +L+GIA LSALTWGMLIH C IK GLD+
Sbjct: 244 GFVNRSRVPEALEMFGKMHLKNLQIDEFTFSIILNGIASLSALTWGMLIHCCTIKYGLDS 303

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           SIVV S+L+DMYSKCGQV  A+S+F  L  +NLV+WNAMI GYARNGD  + I LFE LK
Sbjct: 304 SIVVGSSLIDMYSKCGQVNDAESIFNVLSNRNLVSWNAMIYGYARNGDSAQAISLFELLK 363

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
             RD +PD +TFLNV++ACSH+ IPF+   +YF++M  +YGI P+++HCCSMIRLMGQKG
Sbjct: 364 MERDTKPDGITFLNVISACSHSQIPFEMGIQYFDAMINEYGIAPSIKHCCSMIRLMGQKG 423

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
           E+ RAQ+MI ELGF S GVVWR+LL+A G   DL VA I+AA+VI LE D DYVYVML N
Sbjct: 424 ELSRAQKMIHELGFESCGVVWRSLLAACGTQEDLHVAEIAAAKVIGLERDEDYVYVMLSN 483

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           +Y S G W+  +V+R+ M ++ +RKEAG SWIEV
Sbjct: 484 MYASFGRWEDVNVIRSLMSKKRVRKEAGSSWIEV 517


>gi|356540526|ref|XP_003538739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g47460-like [Glycine max]
          Length = 585

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/517 (60%), Positives = 413/517 (79%), Gaps = 1/517 (0%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + L +LL  +S+L   ++ QQLH Y+++SG+ S++ VST+L+  Y + +S +DAHK+
Sbjct: 64  PNSFALVNLLGLASNLNCPSFGQQLHSYVIRSGYFSHIHVSTSLIKLYVRTHSFSDAHKL 123

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           FVEI +PSVV+WN+LISGYV +G++R AL+ F  L+RS + ADA SFTSAL+AC  L   
Sbjct: 124 FVEIAEPSVVTWNTLISGYVHTGQFRNALSFFTLLDRSHVCADAVSFTSALSACSLLSLF 183

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG +IH KIVK  +  G V+ANCLI MYGKCGS+E A+ +F + I+KD+ISWNSVIAAS
Sbjct: 184 KLGSSIHCKIVKVGMADGTVVANCLIVMYGKCGSLERAVRIFSQTIEKDVISWNSVIAAS 243

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           A NG++ELA+ FLH +PNPDT+SYN +INGIA+FG+++DA+ +LSS+PSPNSSSWNS++T
Sbjct: 244 ANNGDIELAYKFLHLMPNPDTVSYNGLINGIAKFGNMDDAVQVLSSLPSPNSSSWNSVIT 303

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           G+VNRNR  EAL +F +M  ++V MDE+TFS +L+GIAGLSALTWGMLIH C IK GLDA
Sbjct: 304 GFVNRNRAREALDIFRKMHLRNVEMDEFTFSIILTGIAGLSALTWGMLIHCCTIKCGLDA 363

Query: 301 SIVVASALLDMYSKCGQVEIADSMF-RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           S+ V SAL+DMYSKCGQV+ A+S+F  +L  KNLV+WNAM++GYARNGD  +VI LF+ L
Sbjct: 364 SVFVGSALIDMYSKCGQVKNAESIFVHALPNKNLVSWNAMLSGYARNGDSVRVIHLFQSL 423

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           K  R+++PD +TFLN+++ CSH++IPF+    YFESM  +Y I P++EHCCSMIRLMGQK
Sbjct: 424 KMEREIKPDGITFLNLISVCSHSEIPFEVAIRYFESMIDEYKIAPSIEHCCSMIRLMGQK 483

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           GE+WRA+RMI ELGF S GVVWRALL A G  +DL VA I+AA+VI+LE D DYVYVM+ 
Sbjct: 484 GELWRAERMIHELGFESCGVVWRALLGACGTQADLQVAEIAAAKVIELERDEDYVYVMMS 543

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           N+Y S G W+  + +R FM  +G+RKEAG SWIE+++
Sbjct: 544 NMYASCGRWEDVNAIRGFMSRKGIRKEAGSSWIEIDS 580



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 10/241 (4%)

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           L LF E   + +  + +    +L   + L+  ++G  +HS VI+ G  + I V+++L+ +
Sbjct: 52  LALF-EASRRGIKPNSFALVNLLGLASNLNCPSFGQQLHSYVIRSGYFSHIHVSTSLIKL 110

Query: 312 YSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371
           Y +      A  +F  +   ++VTWN +I+GY   G     +  F  L     +  D+V+
Sbjct: 111 YVRTHSFSDAHKLFVEIAEPSVVTWNTLISGYVHTGQFRNALSFFTLLDR-SHVCADAVS 169

Query: 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431
           F + L+ACS   + F   S     + K      TV   C +I + G+ G + RA R+  +
Sbjct: 170 FTSALSACSLLSL-FKLGSSIHCKIVKVGMADGTVVANC-LIVMYGKCGSLERAVRIFSQ 227

Query: 432 LGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV-YVMLCNLYTSHGNWDV 490
                  + W ++++AS    D+++A     + + L  + D V Y  L N     GN D 
Sbjct: 228 T-IEKDVISWNSVIAASANNGDIELAY----KFLHLMPNPDTVSYNGLINGIAKFGNMDD 282

Query: 491 A 491
           A
Sbjct: 283 A 283


>gi|449505010|ref|XP_004162352.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g47460-like [Cucumis sativus]
          Length = 639

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 300/517 (58%), Positives = 386/517 (74%), Gaps = 1/517 (0%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y L  L+RA +    D+   QLH YIL+SGF SNVFV TA++ FY K  S   AHK+
Sbjct: 71  PNGYALVQLVRACTSHALDSCGHQLHSYILRSGFASNVFVGTAMVNFYIKTESFDSAHKL 130

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+PQPS+V+WNSLISGYV  G++RKAL LF++L+ S    D+YS + AL+A G LG L
Sbjct: 131 FDEMPQPSLVTWNSLISGYVHCGQFRKALCLFIQLDGSGNLVDSYSLSIALSASGHLGWL 190

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG +IHSK++K  LE   V+ANCLIDMYGKC S E A+ VF +MI KD ISWNSVIAAS
Sbjct: 191 ILGQSIHSKVIKLGLEDSTVVANCLIDMYGKCESFEGAVEVFNDMIGKDTISWNSVIAAS 250

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           ARNG LE A  +L ++P PDTIS+NE+ING AQFGDIE A+ ILS M SPNSSSWN++LT
Sbjct: 251 ARNGRLEQASRYLQQMPRPDTISFNELINGYAQFGDIEYAVEILSKMDSPNSSSWNAVLT 310

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GYV+R+   EAL  F +M S DV MD++TFS++LSG+AGLSAL WG+ IH C+ K GLD 
Sbjct: 311 GYVDRDETWEALSFFTKMHSCDVRMDQFTFSSILSGVAGLSALKWGLAIHCCITKCGLDT 370

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           S VV SAL+ MYSKCG V  A+ +F+SL +KNLV+WNAMI+G A NG   +VI LFE+LK
Sbjct: 371 STVVGSALISMYSKCGHVNYAEMIFQSLPKKNLVSWNAMISGLAHNGKTMEVIHLFEKLK 430

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
             +D++PD++TFLN+L +CS   +P +   +Y++SM +DYGIKPT+EHCC+M+RLMGQ+G
Sbjct: 431 MTKDVKPDNITFLNILLSCSDNQVPLEATMQYYKSMVEDYGIKPTIEHCCTMVRLMGQRG 490

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
           +V+ ++R+I ELGF S G VWRALL A G   DL +A+++AA+VI L    DYVYVM+ N
Sbjct: 491 DVYGSKRLIHELGFDSSGPVWRALLGACGVLRDLKLAKVAAAKVIVLGAADDYVYVMMSN 550

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSW-IEVEN 516
           ++ SHG W    ++R  MR +G+RKE G SW IE+E 
Sbjct: 551 IFASHGKWRDVKLVRELMRNKGVRKETGYSWLIEMET 587


>gi|449459042|ref|XP_004147255.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g47460-like [Cucumis sativus]
          Length = 582

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 296/510 (58%), Positives = 381/510 (74%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y L  L+RA +    D+   QLH YIL+SGF SNVFV TA++ FY K  S   AHK+
Sbjct: 71  PNGYALVQLVRACTSHALDSCGHQLHSYILRSGFASNVFVGTAMVNFYIKTESFDSAHKL 130

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+PQPS+V+WNSLISGYV  G++RKAL LF++L+ S    D+YS + AL+A G LG L
Sbjct: 131 FDEMPQPSLVTWNSLISGYVHCGQFRKALCLFIQLDGSGNLVDSYSLSIALSASGHLGWL 190

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG +IHSK++K  LE   V+ANCLIDMYGKC S E A+ VF +MI KD ISWNSVIAAS
Sbjct: 191 ILGQSIHSKVIKLGLEDSTVVANCLIDMYGKCESFEGAVEVFNDMIGKDTISWNSVIAAS 250

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           ARNG LE A  +L ++P PDTIS+NE+ING AQFGDIE A+ ILS M SPNSSSWN++LT
Sbjct: 251 ARNGRLEQASRYLQQMPRPDTISFNELINGYAQFGDIEYAVEILSKMDSPNSSSWNAVLT 310

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GYV+R+   EAL  F +M S DV MD++TFS++LSG+AGLSAL WG+ IH C+ K GLD 
Sbjct: 311 GYVDRDETWEALSFFTKMHSCDVRMDQFTFSSILSGVAGLSALKWGLAIHCCITKCGLDT 370

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           S VV SAL+ MYSKCG V  A+ +F+SL +KNLV+WNAMI+G A NG   +VI LFE+LK
Sbjct: 371 STVVGSALISMYSKCGHVNYAEMIFQSLPKKNLVSWNAMISGLAHNGKTMEVIHLFEKLK 430

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
             +D++PD++TFLN+L +CS   +P +   +Y++SM +DYGIKPT+EHCC+M+RLMGQ+G
Sbjct: 431 MTKDVKPDNITFLNILLSCSDNQVPLEATMQYYKSMVEDYGIKPTIEHCCTMVRLMGQRG 490

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
           +V+ ++R+I ELGF S G VWRALL A G   DL +A+++AA+VI L    DYVYVM+ N
Sbjct: 491 DVYGSKRLIHELGFDSSGPVWRALLGACGVLRDLKLAKVAAAKVIVLGAADDYVYVMMSN 550

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCS 510
           ++ SHG W    ++R  MR +G+RKE G S
Sbjct: 551 IFASHGKWRDVKLVRELMRNKGVRKETGYS 580


>gi|255588481|ref|XP_002534617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223524904|gb|EEF27768.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 458

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 284/445 (63%), Positives = 353/445 (79%)

Query: 74  SLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY 133
           +L+     +G +RKAL LF++L RS++  DAYSFT AL+ACGQL  LQ G +IH KIVK 
Sbjct: 13  TLLHKVALTGHFRKALGLFLQLNRSDVCPDAYSFTVALSACGQLSMLQFGRSIHCKIVKC 72

Query: 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL 193
           S + GVV+ NCLIDMYGKC SV++A  VF ++IDKDIISWNSVIAA ARNG LELA+ F 
Sbjct: 73  SSDCGVVVGNCLIDMYGKCASVKEATWVFDKLIDKDIISWNSVIAACARNGRLELAYNFF 132

Query: 194 HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
            ++P  DTISYNEVINGIAQFG+IEDAI IL +MP  NSSSWNS++T YVNRN+  EAL 
Sbjct: 133 CQMPELDTISYNEVINGIAQFGNIEDAIAILLNMPHSNSSSWNSVITAYVNRNQAREALE 192

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
            F +M S D+  DEYT+S +LSG+AG +A  WGMLIH C IK G D S+VV SAL+DMYS
Sbjct: 193 FFTKMHSSDIKKDEYTYSVILSGVAGAAAWKWGMLIHCCAIKGGWDTSVVVGSALIDMYS 252

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           KCGQV+ A+SMF+SL  +NL+TWNAMI+GYA NG+  ++I+ FE++K V DL+PDSVTFL
Sbjct: 253 KCGQVKSAESMFQSLPVRNLITWNAMISGYAHNGNSYEMIQHFEEMKMVEDLKPDSVTFL 312

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
           NV++ACS+T++P  K   YFESM  DY I+PT+EHCCSMIRLMGQ+GEVW+A+RMI EL 
Sbjct: 313 NVISACSNTEVPLQKAVHYFESMINDYMIEPTIEHCCSMIRLMGQRGEVWQAKRMIYELA 372

Query: 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
           FGS GVVWRALLSA GAC +L VA+I+AA+VI+LEGD DYVYV + N++ S+G W+  S 
Sbjct: 373 FGSCGVVWRALLSACGACRNLKVAKIAAAKVIELEGDDDYVYVTMSNIFASYGQWEDVSK 432

Query: 494 MRNFMRERGLRKEAGCSWIEVENVA 518
           +R  MR+R ++KE G SWIEVE VA
Sbjct: 433 VRKIMRQREVKKEVGRSWIEVEMVA 457



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 89/166 (53%), Gaps = 5/166 (3%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           +  ++ DA  + + +P  +  SWNS+I+ YV   + R+AL  F ++  S+I  D Y+++ 
Sbjct: 152 QFGNIEDAIAILLNMPHSNSSSWNSVITAYVNRNQAREALEFFTKMHSSDIKKDEYTYSV 211

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
            L+      + + GM IH   +K   +  VV+ + LIDMY KCG V+ A  +F  +  ++
Sbjct: 212 ILSGVAGAAAWKWGMLIHCCAIKGGWDTSVVVGSALIDMYSKCGQVKSAESMFQSLPVRN 271

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLP-----NPDTISYNEVING 210
           +I+WN++I+  A NGN          +       PD++++  VI+ 
Sbjct: 272 LITWNAMISGYAHNGNSYEMIQHFEEMKMVEDLKPDSVTFLNVISA 317



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 81/374 (21%), Positives = 162/374 (43%), Gaps = 38/374 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y     L A   L    + + +HC I+K      V V   L+  Y K  S+ +A  +
Sbjct: 41  PDAYSFTVALSACGQLSMLQFGRSIHCKIVKCSSDCGVVVGNCLIDMYGKCASVKEATWV 100

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++    ++SWNS+I+   ++G+   A N F ++       D  S+   +    Q G++
Sbjct: 101 FDKLIDKDIISWNSVIAACARNGRLELAYNFFCQMPE----LDTISYNEVINGIAQFGNI 156

Query: 121 QLGMAI-----HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM----IDKDII 171
           +  +AI     HS    +         N +I  Y       +A+  F +M    I KD  
Sbjct: 157 EDAIAILLNMPHSNSSSW---------NSVITAYVNRNQAREALEFFTKMHSSDIKKDEY 207

Query: 172 SWNSVIAASARNGNLELAFGFLHRLP------NPDTISYNEVINGIAQFGDIEDAIMILS 225
           +++ +++  A  G     +G L          +   +  + +I+  ++ G ++ A  +  
Sbjct: 208 TYSVILSGVA--GAAAWKWGMLIHCCAIKGGWDTSVVVGSALIDMYSKCGQVKSAESMFQ 265

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ-SKDVPMDEYTFSTMLSGIAGLSALT 284
           S+P  N  +WN++++GY +     E +  F EM+  +D+  D  TF  ++S  +  + + 
Sbjct: 266 SLPVRNLITWNAMISGYAHNGNSYEMIQHFEEMKMVEDLKPDSVTFLNVISACSN-TEVP 324

Query: 285 WGMLIH---SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL-VTWNAMI 340
               +H   S +    ++ +I    +++ +  + G+V  A  M   L   +  V W A++
Sbjct: 325 LQKAVHYFESMINDYMIEPTIEHCCSMIRLMGQRGEVWQAKRMIYELAFGSCGVVWRALL 384

Query: 341 T--GYARNGDLTKV 352
           +  G  RN  + K+
Sbjct: 385 SACGACRNLKVAKI 398



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 9/203 (4%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +HC  +K G+ ++V V +AL+  Y K   +  A  MF  +P  ++++WN++ISGY  +G 
Sbjct: 228 IHCCAIKGGWDTSVVVGSALIDMYSKCGQVKSAESMFQSLPVRNLITWNAMISGYAHNGN 287

Query: 85  YRKALNLFVELERSE-IYADAYSFTSALAACGQLGSLQLGMAIH---SKIVKYSLERGVV 140
             + +  F E++  E +  D+ +F + ++AC     + L  A+H   S I  Y +E  + 
Sbjct: 288 SYEMIQHFEEMKMVEDLKPDSVTFLNVISACSNT-EVPLQKAVHYFESMINDYMIEPTIE 346

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDI-ISWNSVIAASARNGNL---ELAFGFLHRL 196
               +I + G+ G V  A  +  E+      + W ++++A     NL   ++A   +  L
Sbjct: 347 HCCSMIRLMGQRGEVWQAKRMIYELAFGSCGVVWRALLSACGACRNLKVAKIAAAKVIEL 406

Query: 197 PNPDTISYNEVINGIAQFGDIED 219
              D   Y  + N  A +G  ED
Sbjct: 407 EGDDDYVYVTMSNIFASYGQWED 429


>gi|297790915|ref|XP_002863342.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309177|gb|EFH39601.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 576

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 281/523 (53%), Positives = 379/523 (72%), Gaps = 3/523 (0%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    L HLLR S + G+ + C+QLH Y++K GF+SN  +S +LM FY+  +SL DAHK+
Sbjct: 53  PGASPLVHLLRVSGNYGYVSLCRQLHGYVVKHGFVSNTRLSNSLMRFYKTSDSLEDAHKL 112

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P P V+SWNSL+SGYVQSG++++ L LF++L RS++  + +SFT+ALAAC +L   
Sbjct: 113 FDEMPDPDVISWNSLVSGYVQSGRFQEGLCLFLKLHRSDVLPNEFSFTAALAACARLHLW 172

Query: 121 QLGMAIHSKIVKYSLERG-VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            LG  IHSKIVK  LE+G VV+ NCLIDMYGKC S++DA+ VF  M +KD +SWN+++A+
Sbjct: 173 PLGACIHSKIVKLGLEKGNVVVGNCLIDMYGKCASMDDAVLVFQHMEEKDTVSWNAIVAS 232

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
            +RNG LEL   F H++PNPDT++YNE+I    + GD  +A  +LS MP+ NSSSWN+IL
Sbjct: 233 CSRNGKLELGLWFFHQMPNPDTVTYNELIYAFVKSGDFNNAFQVLSDMPNRNSSSWNTIL 292

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           TGYVN  +  EA   F +M S  V +DEY+ S +L+ IA L+ + WG LIH+C +K GLD
Sbjct: 293 TGYVNSEQSGEATEFFTKMHSSGVGLDEYSLSIVLAAIAALAVVPWGSLIHACALKLGLD 352

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           + +VVASAL+DMYSKCG ++ A+ MF ++ RKNL+ WNAMI+GYARNGD  + I+LF QL
Sbjct: 353 SRVVVASALIDMYSKCGMLKHAELMFWTMPRKNLIMWNAMISGYARNGDSIEAIKLFNQL 412

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           K  R ++PD  TFLN+LA CSH ++P +    YFE M  +YGIKP+VEHCCS+IR MGQ+
Sbjct: 413 KQERFMKPDRFTFLNLLAVCSHCEVPMEVTLGYFEMMINEYGIKPSVEHCCSIIRAMGQR 472

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL-EGDSD-YVYVM 477
           GEVW+A+++I+E GFG  GV WRALL A  A  DL  A+  AA++I+L E D D YVY++
Sbjct: 473 GEVWQAKKVIQEFGFGYDGVAWRALLGACSARKDLKAAKTVAAKMIELGEADKDEYVYIV 532

Query: 478 LCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAH 520
           + NLY  H  W   S +R  MRE+G+ KE G SWI+ +NVA  
Sbjct: 533 MSNLYAYHERWREVSQIRKIMREKGVTKEVGSSWIQEQNVAVQ 575


>gi|89257518|gb|ABD65008.1| PPR repeat containing protein [Brassica oleracea]
          Length = 583

 Score =  582 bits (1501), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 274/517 (52%), Positives = 374/517 (72%), Gaps = 3/517 (0%)

Query: 5   VLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEI 64
           V+ HLLR S + G+ + C+QLH Y++K G++S   +S +LM FY+  +SL DAH++F E+
Sbjct: 64  VMVHLLRVSGNHGYVSLCRQLHGYVVKHGYVSETRLSNSLMRFYKTSDSLEDAHRLFDEM 123

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
           P P V+SWNSL+SGYVQSG+ ++ L LF++LERS ++ + +SFT+ALAAC +L    LG 
Sbjct: 124 PDPDVISWNSLVSGYVQSGRLQEGLCLFLDLERSNVFPNEFSFTAALAACARLKISWLGA 183

Query: 125 AIHSKIVKYSLERG-VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
            IHSKIVK  +E+G VV+ NCLIDMYGKCGS++DA+ VF  M +KD +SWN+++A+ +RN
Sbjct: 184 CIHSKIVKLGMEKGNVVVGNCLIDMYGKCGSMDDAVLVFRHMEEKDTVSWNAIVASCSRN 243

Query: 184 GNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYV 243
             LEL   F H++PNPDT++YNE+I+   +  D   A  ILS MP+PNSSSWN+ILTGYV
Sbjct: 244 RKLELGLWFFHQMPNPDTVTYNELIDAFVKSEDFNSAFQILSCMPNPNSSSWNTILTGYV 303

Query: 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV 303
           N  +  EA   F +M S  V +DEY+ S +L+ IA L  + WG +IHSC +K GLD+ +V
Sbjct: 304 NSEQSREATLFFTKMHSYGVRLDEYSLSIVLAAIAALVVVPWGRVIHSCGLKLGLDSRVV 363

Query: 304 VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363
           VASAL+DMYSKCG ++ A+ MF ++ RKNL+ WNAMI GYARNGD T+ I+LF QLK  R
Sbjct: 364 VASALIDMYSKCGMLKQAELMFWTMPRKNLIAWNAMIYGYARNGDSTEAIKLFSQLKQER 423

Query: 364 DLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW 423
            L+PD +TFLN+LA CSH ++P +    YFE M  +YGIKP VEHCCS+IR M ++G++W
Sbjct: 424 FLKPDGITFLNLLAVCSHCEVPMELTLGYFEMMVNEYGIKPRVEHCCSLIRAMARRGDIW 483

Query: 424 RAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL-EGDSD-YVYVMLCNL 481
           +A+++I+E GFG  GV WRALL A  A  DL  A+  A +++ L E D D YVY+++ NL
Sbjct: 484 QAKKVIQEFGFGFDGVAWRALLGACSAGKDLKAAKAVAGKIVVLGEVDEDEYVYIVMSNL 543

Query: 482 YTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVA 518
           Y  H  W   S +R  MRE+G+ KE G SWI+ +NVA
Sbjct: 544 YAYHEIWREVSQIRKIMREKGVEKEVGSSWIQEQNVA 580



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 96/192 (50%), Gaps = 4/192 (2%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +EY L  +L A + L    + + +H   LK G  S V V++AL+  Y K   L  A  MF
Sbjct: 326 DEYSLSIVLAAIAALVVVPWGRVIHSCGLKLGLDSRVVVASALIDMYSKCGMLKQAELMF 385

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLG-S 119
             +P+ ++++WN++I GY ++G   +A+ LF +L++   +  D  +F + LA C      
Sbjct: 386 WTMPRKNLIAWNAMIYGYARNGDSTEAIKLFSQLKQERFLKPDGITFLNLLAVCSHCEVP 445

Query: 120 LQLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
           ++L +     +V +Y ++  V     LI    + G +  A  V  E     D ++W +++
Sbjct: 446 MELTLGYFEMMVNEYGIKPRVEHCCSLIRAMARRGDIWQAKKVIQEFGFGFDGVAWRALL 505

Query: 178 AASARNGNLELA 189
            A +   +L+ A
Sbjct: 506 GACSAGKDLKAA 517


>gi|15238101|ref|NP_199557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170446|sp|Q9FGL1.1|PP423_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g47460
 gi|9758774|dbj|BAB09072.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008139|gb|AED95522.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 576

 Score =  576 bits (1484), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 274/517 (52%), Positives = 374/517 (72%), Gaps = 5/517 (0%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L HLLR S + G+ + C+QLH Y+ K GF+SN  +S +LM FY+  +SL DAHK+
Sbjct: 53  PDASPLVHLLRVSGNYGYVSLCRQLHGYVTKHGFVSNTRLSNSLMRFYKTSDSLEDAHKV 112

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P P V+SWNSL+SGYVQSG++++ + LF+EL RS+++ + +SFT+ALAAC +L   
Sbjct: 113 FDEMPDPDVISWNSLVSGYVQSGRFQEGICLFLELHRSDVFPNEFSFTAALAACARLHLS 172

Query: 121 QLGMAIHSKIVKYSLERG-VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            LG  IHSK+VK  LE+G VV+ NCLIDMYGKCG ++DA+ VF  M +KD +SWN+++A+
Sbjct: 173 PLGACIHSKLVKLGLEKGNVVVGNCLIDMYGKCGFMDDAVLVFQHMEEKDTVSWNAIVAS 232

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
            +RNG LEL   F H++PNPDT++YNE+I+   + GD  +A  +LS MP+PNSSSWN+IL
Sbjct: 233 CSRNGKLELGLWFFHQMPNPDTVTYNELIDAFVKSGDFNNAFQVLSDMPNPNSSSWNTIL 292

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           TGYVN  +  EA   F +M S  V  DEY+ S +L+ +A L+ + WG LIH+C  K GLD
Sbjct: 293 TGYVNSEKSGEATEFFTKMHSSGVRFDEYSLSIVLAAVAALAVVPWGSLIHACAHKLGLD 352

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           + +VVASAL+DMYSKCG ++ A+ MF ++ RKNL+ WN MI+GYARNGD  + I+LF QL
Sbjct: 353 SRVVVASALIDMYSKCGMLKHAELMFWTMPRKNLIVWNEMISGYARNGDSIEAIKLFNQL 412

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           K  R L+PD  TFLN+LA CSH ++P + +  YFE M  +Y IKP+VEHCCS+IR MGQ+
Sbjct: 413 KQERFLKPDRFTFLNLLAVCSHCEVPMEVMLGYFEMMINEYRIKPSVEHCCSLIRAMGQR 472

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD---YVYV 476
           GEVW+A+++I+E GFG  GV WRALL A  A  DL  A+  AA++I+L GD+D   Y+Y+
Sbjct: 473 GEVWQAKQVIQEFGFGYDGVAWRALLGACSARKDLKAAKTVAAKMIEL-GDADKDEYLYI 531

Query: 477 MLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
           ++ NLY  H  W     +R  MRE G+ KE G SWI+
Sbjct: 532 VMSNLYAYHERWREVGQIRKIMRESGVLKEVGSSWID 568



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 124/300 (41%), Gaps = 18/300 (6%)

Query: 71  SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKI 130
           SW++++    + G     L   VEL       DA      L   G  G + L   +H  +
Sbjct: 23  SWSTIVPALARFGSI-GVLRAAVELINDGEKPDASPLVHLLRVSGNYGYVSLCRQLHGYV 81

Query: 131 VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA- 189
            K+       ++N L+  Y    S+EDA  VF EM D D+ISWNS+++   ++G  +   
Sbjct: 82  TKHGFVSNTRLSNSLMRFYKTSDSLEDAHKVFDEMPDPDVISWNSLVSGYVQSGRFQEGI 141

Query: 190 --FGFLHRLP-NPDTISYNEVINGIAQ-----FGDIEDAIMILSSMPSPNSSSWNSILTG 241
             F  LHR    P+  S+   +   A+      G    + ++   +   N    N ++  
Sbjct: 142 CLFLELHRSDVFPNEFSFTAALAACARLHLSPLGACIHSKLVKLGLEKGNVVVGNCLIDM 201

Query: 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
           Y     + +A+ +F  M+ KD      +++ +++  +    L  G+        Q  +  
Sbjct: 202 YGKCGFMDDAVLVFQHMEEKDT----VSWNAIVASCSRNGKLELGLWF----FHQMPNPD 253

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
            V  + L+D + K G    A  +   +   N  +WN ++TGY  +    +  E F ++ +
Sbjct: 254 TVTYNELIDAFVKSGDFNNAFQVLSDMPNPNSSSWNTILTGYVNSEKSGEATEFFTKMHS 313


>gi|356495603|ref|XP_003516664.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g47460-like [Glycine max]
          Length = 533

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 274/452 (60%), Positives = 358/452 (79%), Gaps = 3/452 (0%)

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
           +++  N+LISGYV + ++R AL+ F  L++S + ADA SFTSAL+AC QL  LQLG +IH
Sbjct: 77  NLLGLNTLISGYVHASQFRNALSFFTRLDKSYVCADAVSFTSALSACSQLSXLQLGSSIH 136

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
            KIVK  ++ G V+ANCLIDMYGKCG VE A+ VF + I+KD+ISWNSVIAASA NG++E
Sbjct: 137 CKIVKLGMDDGTVVANCLIDMYGKCGFVERAVQVFSQTIEKDVISWNSVIAASANNGHIE 196

Query: 188 LAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
           LA+ FLH +PN DT+SYN +INGIAQFG++E A+ +LSS+PSPNSSSWNS++TG+++ NR
Sbjct: 197 LAYKFLHLMPNTDTVSYNGLINGIAQFGNVEVAVQVLSSLPSPNSSSWNSVITGFLDTNR 256

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307
             EAL +F +M  + V MDE+TFS +L+GIA LSALTWGMLIH C IK GLDAS+VV SA
Sbjct: 257 AREALDMFRKMHLRKVEMDEFTFSIILNGIACLSALTWGMLIHCCTIKCGLDASVVVGSA 316

Query: 308 LLDMYSKCGQVEIADSMF-RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
           L+DMYSKCGQV+ A+S+F  +L  KNLV+WNA+++GYARNGD   VI LF+ LK  RD++
Sbjct: 317 LIDMYSKCGQVKNAESIFLHALPNKNLVSWNAIMSGYARNGDSAGVIHLFKLLKMERDVK 376

Query: 367 PDSVTF--LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424
           PD +TF  LN+++ CSH++IPF+    YFESM  +Y I P++EHCCSMIRLMGQKGE+WR
Sbjct: 377 PDCITFLNLNLISVCSHSEIPFEVAIRYFESMIDEYKIAPSIEHCCSMIRLMGQKGELWR 436

Query: 425 AQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484
           A+R+I ELGF S GVVWRALL A G  +DL VA I+AA+VI+++ D DYVYVM+ N+Y S
Sbjct: 437 AERLILELGFESCGVVWRALLGACGTQADLQVAEIAAAKVIEMDRDEDYVYVMMSNMYAS 496

Query: 485 HGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            G W+  +V+R  M  + +RKEAG SWIE+++
Sbjct: 497 CGRWEDVNVIRGLMSRKEVRKEAGSSWIEIDS 528



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 99/197 (50%), Gaps = 11/197 (5%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +E+    +L   + L   T+   +HC  +K G  ++V V +AL+  Y K   + +A  +F
Sbjct: 275 DEFTFSIILNGIACLSALTWGMLIHCCTIKCGLDASVVVGSALIDMYSKCGQVKNAESIF 334

Query: 62  VE-IPQPSVVSWNSLISGYVQSGKYRKALNLF--VELERSEIYADAYSF--TSALAACGQ 116
           +  +P  ++VSWN+++SGY ++G     ++LF  +++ER ++  D  +F   + ++ C  
Sbjct: 335 LHALPNKNLVSWNAIMSGYARNGDSAGVIHLFKLLKMER-DVKPDCITFLNLNLISVCSH 393

Query: 117 LGSLQLGMAI---HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIIS 172
              +   +AI    S I +Y +   +     +I + G+ G +  A  +  E+  +   + 
Sbjct: 394 -SEIPFEVAIRYFESMIDEYKIAPSIEHCCSMIRLMGQKGELWRAERLILELGFESCGVV 452

Query: 173 WNSVIAASARNGNLELA 189
           W +++ A     +L++A
Sbjct: 453 WRALLGACGTQADLQVA 469


>gi|359496858|ref|XP_003635358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g47460-like [Vitis vinifera]
          Length = 384

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/342 (69%), Positives = 284/342 (83%)

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           ARN  LE AF +L ++P PDTISYNE+INGIAQFG+IEDAI ILSSMPSPNSSSWNSI+T
Sbjct: 40  ARNRKLEQAFSYLRQMPEPDTISYNELINGIAQFGNIEDAIQILSSMPSPNSSSWNSIIT 99

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GYVNR+   EAL  F +MQSKD+ MD +TFS++LSGIAGL+AL WG+LIH C IK GLD 
Sbjct: 100 GYVNRDLSWEALDFFSKMQSKDIEMDRFTFSSILSGIAGLAALKWGVLIHCCTIKCGLDE 159

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           SIVV SAL+DMYSKCGQV+ A+ +F+SL RKNLVTWNAMI+G+A NG+ T+VI+LF+QLK
Sbjct: 160 SIVVGSALIDMYSKCGQVKNAEMLFQSLPRKNLVTWNAMISGFAHNGNFTEVIKLFKQLK 219

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
           T RDL+PD +TFLNVL ACSH  IP     +YFESM KD+GI+PT EHCCSMIRLMGQ+G
Sbjct: 220 TERDLKPDGITFLNVLLACSHNQIPLQVAIQYFESMIKDHGIEPTAEHCCSMIRLMGQRG 279

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
           EVWRA+RMI ELGF SYG+VWR+LL A GAC DLDVA ++AA+VI+LEG +++VYVM+ N
Sbjct: 280 EVWRAERMICELGFSSYGLVWRSLLGACGACGDLDVAEVAAAKVIELEGHNEFVYVMMSN 339

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAHSS 522
           +Y  +G W   SV+R  MRERG+RK AGCSWIEVENV   SS
Sbjct: 340 MYACYGKWGDVSVVRKLMRERGVRKGAGCSWIEVENVIPASS 381



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 36/192 (18%)

Query: 53  SLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYR-------------------------- 86
            L  A     ++P+P  +S+N LI+G  Q G                             
Sbjct: 44  KLEQAFSYLRQMPEPDTISYNELINGIAQFGNIEDAIQILSSMPSPNSSSWNSIITGYVN 103

Query: 87  -----KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
                +AL+ F +++  +I  D ++F+S L+    L +L+ G+ IH   +K  L+  +V+
Sbjct: 104 RDLSWEALDFFSKMQSKDIEMDRFTFSSILSGIAGLAALKWGVLIHCCTIKCGLDESIVV 163

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP---- 197
            + LIDMY KCG V++A  +F  +  K++++WN++I+  A NGN         +L     
Sbjct: 164 GSALIDMYSKCGQVKNAEMLFQSLPRKNLVTWNAMISGFAHNGNFTEVIKLFKQLKTERD 223

Query: 198 -NPDTISYNEVI 208
             PD I++  V+
Sbjct: 224 LKPDGITFLNVL 235



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 87/170 (51%), Gaps = 6/170 (3%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +HC  +K G   ++ V +AL+  Y K   + +A  +F  +P+ ++V+WN++ISG+  +G 
Sbjct: 148 IHCCTIKCGLDESIVVGSALIDMYSKCGQVKNAEMLFQSLPRKNLVTWNAMISGFAHNGN 207

Query: 85  YRKALNLFVELE-RSEIYADAYSFTSALAACGQLGSLQLGMAIH---SKIVKYSLERGVV 140
           + + + LF +L+   ++  D  +F + L AC     + L +AI    S I  + +E    
Sbjct: 208 FTEVIKLFKQLKTERDLKPDGITFLNVLLACSH-NQIPLQVAIQYFESMIKDHGIEPTAE 266

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLELA 189
               +I + G+ G V  A  +  E+      + W S++ A    G+L++A
Sbjct: 267 HCCSMIRLMGQRGEVWRAERMICELGFSSYGLVWRSLLGACGACGDLDVA 316



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 113/270 (41%), Gaps = 50/270 (18%)

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
           E   +  N LI+   + G++EDAI +   M   +  SWNS+I           A  F  +
Sbjct: 57  EPDTISYNELINGIAQFGNIEDAIQILSSMPSPNSSSWNSIITGYVNRDLSWEALDFFSK 116

Query: 196 LPNPDT----ISYNEVINGIA-----------------------------------QFGD 216
           + + D      +++ +++GIA                                   + G 
Sbjct: 117 MQSKDIEMDRFTFSSILSGIAGLAALKWGVLIHCCTIKCGLDESIVVGSALIDMYSKCGQ 176

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS-KDVPMDEYTF-STML 274
           +++A M+  S+P  N  +WN++++G+ +     E + LF ++++ +D+  D  TF + +L
Sbjct: 177 VKNAEMLFQSLPRKNLVTWNAMISGFAHNGNFTEVIKLFKQLKTERDLKPDGITFLNVLL 236

Query: 275 SGIAGLSALTWGMLIHSCVIK-QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           +       L   +     +IK  G++ +     +++ +  + G+V  A+ M   L   + 
Sbjct: 237 ACSHNQIPLQVAIQYFESMIKDHGIEPTAEHCCSMIRLMGQRGEVWRAERMICELGFSSY 296

Query: 334 -VTWNAMITGYARNGDL-------TKVIEL 355
            + W +++      GDL        KVIEL
Sbjct: 297 GLVWRSLLGACGACGDLDVAEVAAAKVIEL 326


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 176/515 (34%), Positives = 283/515 (54%), Gaps = 44/515 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +    +L A +DL       + H  I+K GF SNVFV   L+  Y K   +  A ++
Sbjct: 164 PNHFTFASILPACTDL---EVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFAREL 220

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++PQ  VVSWN++I+GYVQ+G    AL LF E+ +                       
Sbjct: 221 FDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPK----------------------- 257

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
                           R V+  N ++  Y +CG VE+A+ +F +M +++++SWN++IA  
Sbjct: 258 ----------------RDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGY 301

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
            +NG+++ AF     +P  + IS+N VI+G AQ G +E+A+ +  +MP  N  SWN+++ 
Sbjct: 302 VQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIA 361

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GY    +   AL LFG+MQ  D+  +  TF+ +L   A L+ L  G   H  VI+ G  +
Sbjct: 362 GYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQS 421

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
            ++V + L+ MY+KCG +E A  +F  + +++  + +AMI GYA NG   + +ELFEQ++
Sbjct: 422 DVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQ 481

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
               L+PD VTF+ VL+AC H  +  D+  +YF+ MT+ Y I P +EH   MI L+G+ G
Sbjct: 482 -FTGLKPDRVTFVGVLSACCHAGL-VDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAG 539

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
               A  +I ++       +W +LLSA    +++D+    A  +I L   +   YV+L N
Sbjct: 540 CFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSN 599

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           +Y + G WD    +RN M++R ++K+ GCSWI ++
Sbjct: 600 IYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIVIK 634



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 84/164 (51%), Gaps = 6/164 (3%)

Query: 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
           + ++     + R+ EALH+  +M    +     T+ ++L G     +L    L+H+ +I+
Sbjct: 33  DGLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQ 92

Query: 296 QGLDAS-IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
              +   I + + L+ +Y K G +  A  +F  +  KN+V+W AMI  YAR+    + + 
Sbjct: 93  TQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALG 152

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
            F +++ V  +QP+  TF ++L AC+  ++    + E+ + + K
Sbjct: 153 FFYEMQDV-GIQPNHFTFASILPACTDLEV----LGEFHDEIVK 191


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 176/556 (31%), Positives = 286/556 (51%), Gaps = 41/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P      HLL A ++       + +H  IL+SG  SN  ++ ALM  YR+  SL +A  +
Sbjct: 429 PGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNV 488

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F       V+SWNS+I+G+ Q G Y  A  LF E++  E+  D  +F S L+ C    +L
Sbjct: 489 FEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEAL 548

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IH +I +  L+  V + N LI+MY +CGS++DA  VF  +  +D++SW ++I   
Sbjct: 549 ELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGC 608

Query: 181 ARNGNLELAFGFLHRLPNP---------------------------------------DT 201
           A  G    A     ++ N                                        DT
Sbjct: 609 ADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDT 668

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+  ++ G + DA  +   MPS +  SWN I+ GY        A+    +MQ +
Sbjct: 669 GVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQ 728

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           DV  ++++F ++L+  +  SAL  G  +H+ ++K+ L   + V +AL+ MY+KCG    A
Sbjct: 729 DVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEA 788

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F ++  KN+VTWNAMI  YA++G  +K +  F  ++    ++PD  TF ++L+AC+H
Sbjct: 789 QEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEK-EGIKPDGSTFTSILSACNH 847

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  +   + F SM  +YG+ PT+EH   ++ L+G+      A+ +I ++ F     VW
Sbjct: 848 AGLVLEGY-QIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVW 906

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
             LL A     ++ +A  +A   +KL   +  VY++L N+Y + G WD  + +R  M  R
Sbjct: 907 ETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGR 966

Query: 502 GLRKEAGCSWIEVENV 517
           G+RKE G SWIEV+N+
Sbjct: 967 GIRKEPGRSWIEVDNI 982



 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 208/399 (52%), Gaps = 40/399 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H  ++++    ++F+S  L+  Y K  S+ DAH++F E+P+  V+SWNSLIS Y Q 
Sbjct: 47  KRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQ 106

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G  +KA  LF E++ +    +  ++ S L AC     L+ G  IHS+I+K   +R   + 
Sbjct: 107 GFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQ 166

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
           N L+ MYGKCG +  A  VF  +  +D++S+N+++   A+   ++   G   ++     +
Sbjct: 167 NSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGIS 226

Query: 199 PDTISYNEVINGIA-----------------------------------QFGDIEDAIMI 223
           PD ++Y  +++                                      + GD++ A   
Sbjct: 227 PDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQA 286

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
                  +   +N+++          EA   +  M+S  V ++  T+ ++L+  +   AL
Sbjct: 287 FKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKAL 346

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G LIHS + + G  + + + +AL+ MY++CG +  A  +F ++ +++L++WNA+I GY
Sbjct: 347 EAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGY 406

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           AR  D  + + L++Q+++   ++P  VTFL++L+AC+++
Sbjct: 407 ARREDRGEAMRLYKQMQS-EGVKPGRVTFLHLLSACANS 444



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 198/395 (50%), Gaps = 40/395 (10%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H +I + G  S+V +  AL+  Y +   L  A ++F  +P+  ++SWN++I+GY +   
Sbjct: 352 IHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRED 411

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
             +A+ L+ +++   +     +F   L+AC    +   G  IH  I++  ++    +AN 
Sbjct: 412 RGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANA 471

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PD 200
           L++MY +CGS+ +A  VF     +D+ISWNS+IA  A++G+ E A+     + N    PD
Sbjct: 472 LMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPD 531

Query: 201 TISY-----------------------------------NEVINGIAQFGDIEDAIMILS 225
            I++                                   N +IN   + G ++DA  +  
Sbjct: 532 NITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFH 591

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           S+   +  SW +++ G  ++    +A+ LF +MQ++     + TFS++L      + L  
Sbjct: 592 SLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDE 651

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  + + ++  G +    V +AL+  YSK G +  A  +F  +  +++V+WN +I GYA+
Sbjct: 652 GKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQ 711

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           NG     +E   Q++  +D+ P+  +F+++L ACS
Sbjct: 712 NGLGQTAVEFAYQMQE-QDVVPNKFSFVSLLNACS 745



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 154/316 (48%), Gaps = 44/316 (13%)

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
           ++ + L  C +   L     IH+++V+  +   + ++N LI+MY KC SV DA  VF EM
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISY----------------- 204
             +D+ISWNS+I+  A+ G  + AF     + N    P+ I+Y                 
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 205 ------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246
                             N +++   + GD+  A  + + +   +  S+N++L  Y  + 
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKA 208

Query: 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
            V E L LFG+M S+ +  D+ T+  +L      S L  G  IH   +++GL++ I V +
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGT 268

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD-- 364
           AL+ M  +CG V+ A   F+    +++V +NA+I   A++G     +E FEQ   +R   
Sbjct: 269 ALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHG---HNVEAFEQYYRMRSDG 325

Query: 365 LQPDSVTFLNVLAACS 380
           +  +  T+L++L ACS
Sbjct: 326 VALNRTTYLSILNACS 341



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 95/182 (52%), Gaps = 5/182 (2%)

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
           P+   +    Q +    +  T+  +L        L     IH+ +++  +   I +++ L
Sbjct: 9   PDREDVSNTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLL 68

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           ++MY KC  V  A  +F+ + R+++++WN++I+ YA+ G   K  +LFE+++      P+
Sbjct: 69  INMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNA-GFIPN 127

Query: 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTK-DYGIKPTVEHCCSMIRLMGQKGEVWRAQR 427
            +T++++L AC ++    +   +    + K  Y   P V++  S++ + G+ G++ RA++
Sbjct: 128 KITYISILTAC-YSPAELENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRARQ 184

Query: 428 MI 429
           + 
Sbjct: 185 VF 186


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 171/497 (34%), Positives = 278/497 (55%), Gaps = 7/497 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA----HKMFVEIPQPSVVSWNSLISG 78
            Q H +ILKSG + + F ++ L+      NS A A    H +F  IP P+   WN++I  
Sbjct: 24  HQAHAHILKSGLIHSTFAASRLIASV-STNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRA 82

Query: 79  YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
           Y  S     AL +F ++  + +  D Y+FT AL +CG    ++ G  IH  ++K  L   
Sbjct: 83  YANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDD 142

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN 198
           + I N LI +Y  CG +EDA  +   M+++D++SWN++++A A  G +ELA      +  
Sbjct: 143 LFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTE 202

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
            +  S+N +I+G    G +E+A  +    P  N  SWN+++TGY +  R  E L LF +M
Sbjct: 203 RNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDM 262

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           Q   V  D  T  ++LS  A + AL+ G  +H+ + K G+     VA+AL+DMYSKCG +
Sbjct: 263 QHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSI 322

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           E A  +F S  RK++ TWN++I+G + +G     +++F ++  V   +P+ VTF+ VL+A
Sbjct: 323 EKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEM-LVEGFKPNEVTFVCVLSA 381

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CS   +  D+  E F  M   +GI+PT+EH   M+ L+G+ G +  A+ +++++      
Sbjct: 382 CSRAGL-LDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEAS 440

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
           VVW +LL A     ++++A   A ++++L       +V L N+Y S G W     +R  M
Sbjct: 441 VVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKM 500

Query: 499 RERGLRKEAGCSWIEVE 515
           R +G+RK+ GCS IEV+
Sbjct: 501 RAQGVRKDPGCSMIEVD 517



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 183/389 (47%), Gaps = 28/389 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++Y     L++          +Q+H ++LK+G   ++F+   L+  Y     + DA  +
Sbjct: 106 PDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHL 165

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF-TSALAACGQLGS 119
              + +  VVSWN+L+S Y + G    A +LF E+  +E   ++++F  S     G L  
Sbjct: 166 LDRMLERDVVSWNALLSAYAERGLMELACHLFDEM--TERNVESWNFMISGYVGVGLLEE 223

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM----IDKDIISWNS 175
            +       ++   +  + VV  N +I  Y   G   + + +F +M    +  D  +  S
Sbjct: 224 AR-------RVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVS 276

Query: 176 VIAASARNGNLELAFGFLHRLPNPDTISYN-----EVINGIAQFGDIEDAIMILSSMPSP 230
           V++A A  G L     ++H   + + IS +      +++  ++ G IE A+ + +S    
Sbjct: 277 VLSACAHVGALSQG-EWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRK 335

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
           + S+WNSI++G         AL +F EM  +    +E TF  +LS  +    L  G  + 
Sbjct: 336 DISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMF 395

Query: 291 SCVIK-QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL-VTWNAMITGYARNGD 348
           + ++   G+  +I     ++D+  + G +E A+ + + + +K   V W +++     +G+
Sbjct: 396 NLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGN 455

Query: 349 LTKVIELFEQL-KTVRDLQP-DSVTFLNV 375
               +EL E++ + + +L P +S +F+ +
Sbjct: 456 ----VELAERVAQKLLELSPQESSSFVQL 480



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 117/232 (50%), Gaps = 5/232 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L A + +G  +  + +H YI K+G   + FV+TAL+  Y K  S+  A ++
Sbjct: 269 PDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEV 328

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +  + +WNS+ISG    G  + AL +F E+       +  +F   L+AC + G L
Sbjct: 329 FNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLL 388

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI-ISWNSVIA 178
             G  + + +V  + ++  +    C++D+ G+ G +E+A  +  +M  K+  + W S++ 
Sbjct: 389 DEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLG 448

Query: 179 ASARNGNLELAFGFLHR---LPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           A   +GN+ELA     +   L   ++ S+ ++ N  A  G  +D + +   M
Sbjct: 449 ACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKM 500


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 171/556 (30%), Positives = 290/556 (52%), Gaps = 41/556 (7%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
            P      HLL A ++    +  + +H  IL+SG  SN  ++ ALM  YR+  S+ +A  +
Sbjct: 484  PGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNV 543

Query: 61   FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            F       ++SWNS+I+G+ Q G Y  A  LF+E+++  +  D  +F S L  C    +L
Sbjct: 544  FEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEAL 603

Query: 121  QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +LG  IH  I++  L+  V + N LI+MY +CGS++DA  VF  +  ++++SW ++I   
Sbjct: 604  ELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGF 663

Query: 181  ARNGNLELAFGFLHRLPNP---------------------------------------DT 201
            A  G    AF    ++ N                                        DT
Sbjct: 664  ADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDT 723

Query: 202  ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
               N +I+  ++ G + DA  +   MP+ +  SWN ++ GY        AL    +MQ +
Sbjct: 724  GVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQ 783

Query: 262  DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
             V +++++F ++L+  +  SAL  G  +H+ ++K+ +   + V +AL+ MY+KCG +E A
Sbjct: 784  GVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEA 843

Query: 322  DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              +F +   KN+VTWNAMI  YA++G  +K ++ F  +     ++PD  TF ++L+AC+H
Sbjct: 844  QEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDK-EGIKPDGSTFTSILSACNH 902

Query: 382  TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
            + +  +  +  F S+   +G+ PT+EH   ++ L+G+ G    A+ +I ++ F     VW
Sbjct: 903  SGLVMEG-NRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVW 961

Query: 442  RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
              LL A     ++ +A  +A   +KL   +  VYV+L N+Y + G WD  + +R  M  R
Sbjct: 962  ETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGR 1021

Query: 502  GLRKEAGCSWIEVENV 517
            G+RKE G SWIEV+N+
Sbjct: 1022 GIRKEPGRSWIEVDNI 1037



 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 214/399 (53%), Gaps = 40/399 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H  ++++G   ++F+S  L+  Y K  S++DAH++F+++P+  V+SWNSLIS Y Q 
Sbjct: 102 KRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQ 161

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G  +KA  LF E++ +       ++ S L AC     L+ G  IHSKI++   +R   + 
Sbjct: 162 GFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQ 221

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
           N L++MYGKC  +  A  VF  +  +D++S+N+++   A+   +E   G   ++ +    
Sbjct: 222 NSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIP 281

Query: 199 PDTISY------------------------NEVING-----------IAQFGDIEDAIMI 223
           PD ++Y                        NE +N              + GD+  A   
Sbjct: 282 PDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQA 341

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
           L +    +   +N+++          EA   + +M+S  V M+  T+ ++L+  +   AL
Sbjct: 342 LEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKAL 401

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G LIHS + + G  + + + ++L+ MY++CG +  A  +F ++ +++L++WNA+I GY
Sbjct: 402 GAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGY 461

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           AR  D  + ++L++Q+++   ++P  VTFL++L+AC+++
Sbjct: 462 ARREDRGEAMKLYKQMQS-EGVKPGRVTFLHLLSACTNS 499



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 204/422 (48%), Gaps = 40/422 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++     +L A        Y +++H  I+++G+  +  V  +L+  Y K   L  A ++
Sbjct: 181 PSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQV 240

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I +  VVS+N+++  Y Q     + + LF ++    I  D  ++ + L A      L
Sbjct: 241 FSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSML 300

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH   V   L   + +   L  M+ +CG V  A        D+D++ +N++IAA 
Sbjct: 301 DEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAAL 360

Query: 181 ARNGNLELAFGFLHRLPNPDTI----SY-------------------------------- 204
           A++G+ E AF   +++ +   +    +Y                                
Sbjct: 361 AQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDV 420

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+  A+ GD+  A  + ++MP  +  SWN+I+ GY  R    EA+ L+ +MQS+
Sbjct: 421 QIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSE 480

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V     TF  +LS     SA + G +IH  +++ G+ ++  +A+AL++MY +CG +  A
Sbjct: 481 GVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEA 540

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            ++F     +++++WN+MI G+A++G      +LF ++K    L+PD +TF +VL  C +
Sbjct: 541 QNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKK-EGLEPDKITFASVLVGCKN 599

Query: 382 TD 383
            +
Sbjct: 600 PE 601



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 169/366 (46%), Gaps = 42/366 (11%)

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
           ++   +  C +  SL     IH+++V+  +   + ++N LI+MY KC SV DA  VF +M
Sbjct: 84  AYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKM 143

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISY----------------- 204
             +D+ISWNS+I+  A+ G  + AF     +      P  I+Y                 
Sbjct: 144 PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGK 203

Query: 205 ------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246
                             N ++N   +  D+  A  + S +   +  S+N++L  Y  + 
Sbjct: 204 KIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKA 263

Query: 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
            V E + LFG+M S+ +P D+ T+  +L      S L  G  IH   + +GL++ I V +
Sbjct: 264 YVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGT 323

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
           AL  M+ +CG V  A     +   +++V +NA+I   A++G   +  E + Q+++   + 
Sbjct: 324 ALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRS-DGVV 382

Query: 367 PDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426
            +  T+L+VL ACS +        E   S   + G    V+   S+I +  + G++ RA+
Sbjct: 383 MNRTTYLSVLNACSTSKAL--GAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRAR 440

Query: 427 RMIREL 432
            +   +
Sbjct: 441 ELFNTM 446



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV 304
           ++R  E   L    Q +    +   +  ++       +L     IH+ +++ G+   I +
Sbjct: 60  QHRGSEREDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFL 119

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
           ++ L++MY KC  V  A  +F  + R+++++WN++I+ YA+ G   K  +LFE+++T   
Sbjct: 120 SNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTA-G 178

Query: 365 LQPDSVTFLNVLAAC 379
             P  +T++++L AC
Sbjct: 179 FIPSKITYISILTAC 193


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  317 bits (812), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 176/532 (33%), Positives = 293/532 (55%), Gaps = 41/532 (7%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QLH + LK+ F ++V + TA +  Y K N+L+DA K+F  +P  ++ S+N++I GY +S 
Sbjct: 296 QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSD 355

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           K  +AL +F  L++S +  D  S + A  AC  +     G+ +H   +K   +  + +AN
Sbjct: 356 KGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVAN 415

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPNP 199
            ++DMYGKCG++ +A  VF EM+ +D +SWN++IAA  +NGN    L L    L     P
Sbjct: 416 AILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEP 475

Query: 200 DTISYNEVIN-----------------------------GIA------QFGDIEDAIMIL 224
           D  +Y  V+                              GIA      + G +E A  + 
Sbjct: 476 DEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLH 535

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             +      SWN+I++G+  + +  EA   F +M    V  D +T++T+L   A L  + 
Sbjct: 536 DRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVE 595

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  IH+ +IK+ L +   ++S L+DMYSKCG ++    +F     ++ VTWNAM+ GYA
Sbjct: 596 LGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYA 655

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           ++G   + +++FE ++ + +++P+  TFL VL AC H  +  +K   YF SM  +YG+ P
Sbjct: 656 QHGLGEEALKIFEYMQ-LENVKPNHATFLAVLRACGHMGL-VEKGLHYFHSMLSNYGLDP 713

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
            +EH   ++ +MG+ G+V +A  +I  + F +  V+WR LLS      +++VA  +A  +
Sbjct: 714 QLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSI 773

Query: 465 IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           ++LE +    YV+L N+Y + G W+  + +R  MR  GL+KE GCSWIE+++
Sbjct: 774 LQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKS 825



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 108/397 (27%), Positives = 190/397 (47%), Gaps = 40/397 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H   +K GF  +V   +AL+  Y K   L  + + F  +P+ + VSW+++I+G VQ+ 
Sbjct: 195 QIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQND 254

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
             R  L LF E++++ +     +F S   +C  L +L+LG  +H   +K      VVI  
Sbjct: 255 DLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGT 314

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP---- 199
             +DMY KC ++ DA  +F  + + ++ S+N++I   AR+     A G    L       
Sbjct: 315 ATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGL 374

Query: 200 DTISY-----------------------------------NEVINGIAQFGDIEDAIMIL 224
           D +S                                    N +++   + G + +A ++ 
Sbjct: 375 DEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVF 434

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             M S ++ SWN+I+  +       + L LF  M    +  DE+T+ ++L   AG  AL 
Sbjct: 435 EEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALN 494

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            GM IH+ +IK  L     V  AL+DMYSKCG +E A+ +   L  + +V+WNA+I+G++
Sbjct: 495 CGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFS 554

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
                 +  + F ++  +  + PD+ T+  +L  C++
Sbjct: 555 LQKQSEEAQKTFSKMLEM-GVDPDNFTYATILDTCAN 590



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 117/443 (26%), Positives = 199/443 (44%), Gaps = 71/443 (16%)

Query: 8   HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSL------------- 54
           H+ +  SD       +Q H  ++ + F   VFV+  L+  Y K + L             
Sbjct: 47  HIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQR 106

Query: 55  ------------------ADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
                               A K+F  +P+  VVSWNSLISGY+ +G +RK +++F+++ 
Sbjct: 107 DTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMG 166

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           R     D  +F   L +C  L     G+ IH   VK   +  VV  + L+DMY KC  ++
Sbjct: 167 RMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLD 226

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP----------------- 199
            +I  F  M +K+ +SW+++IA   +N +L         +                    
Sbjct: 227 CSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCA 286

Query: 200 ----------------DTISYNEVINGIAQF------GDIEDAIMILSSMPSPNSSSWNS 237
                            T    +V+ G A         ++ DA  + +S+P+ N  S+N+
Sbjct: 287 GLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNA 346

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           I+ GY   ++  EAL +F  +Q   + +DE + S      A +     G+ +H   +K  
Sbjct: 347 IIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSL 406

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
             ++I VA+A+LDMY KCG +  A  +F  +  ++ V+WNA+I  + +NG+  K + LF 
Sbjct: 407 CQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFV 466

Query: 358 QLKTVRDLQPDSVTFLNVLAACS 380
            +     ++PD  T+ +VL AC+
Sbjct: 467 WMLQ-SGMEPDEFTYGSVLKACA 488



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 175/381 (45%), Gaps = 41/381 (10%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +E  L    RA + +  D    Q+H   +KS   SN+ V+ A++  Y K  +L +A  +F
Sbjct: 375 DEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVF 434

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            E+     VSWN++I+ + Q+G   K L+LFV + +S +  D +++ S L AC    +L 
Sbjct: 435 EEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALN 494

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            GM IH++I+K  L     +   LIDMY KCG +E A  +   + ++ ++SWN++I+  +
Sbjct: 495 CGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFS 554

Query: 182 RNGNLELAFGFLHRL----PNPDTISYNEVINGIAQF----------------------- 214
                E A     ++     +PD  +Y  +++  A                         
Sbjct: 555 LQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAY 614

Query: 215 ------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                       G+++D  +I    P+ +  +WN+++ GY       EAL +F  MQ ++
Sbjct: 615 ISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLEN 674

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           V  +  TF  +L     +  +  G+   HS +   GLD  +   S ++D+  + GQV  A
Sbjct: 675 VKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKA 734

Query: 322 DSMFRSL-CRKNLVTWNAMIT 341
             +   +    + V W  +++
Sbjct: 735 LELIEGMPFEADAVIWRTLLS 755



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 131/275 (47%), Gaps = 32/275 (11%)

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
           +F+     C    +L  G   H++++    +  V + NCLI MY KC             
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCS------------ 91

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILS 225
                              +LE AF     +P  DT+S+N ++ G A  GDI  A  +  
Sbjct: 92  -------------------DLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFD 132

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           +MP  +  SWNS+++GY++     + + +F +M       D  TF+ +L   + L     
Sbjct: 133 AMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGG 192

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G+ IH   +K G D  +V  SALLDMY+KC +++ +   F S+  KN V+W+A+I G  +
Sbjct: 193 GIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQ 252

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           N DL   +ELF++++    +     TF +V  +C+
Sbjct: 253 NDDLRGGLELFKEMQKA-GVGVSQSTFASVFRSCA 286



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 117/240 (48%), Gaps = 17/240 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    +L   ++L      +Q+H  I+K    S+ ++S+ L+  Y K  ++ D   +
Sbjct: 576 PDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLI 635

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F + P    V+WN+++ GY Q G   +AL +F  ++   +  +  +F + L ACG +G +
Sbjct: 636 FEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLV 695

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF-GEMIDKDIISWNSVIA 178
           + G+   HS +  Y L+  +   +C++D+ G+ G V  A+ +  G   + D + W ++++
Sbjct: 696 EKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLS 755

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
               +GN+E+A          +  +Y+     I Q    + A  +L S    N+  WN +
Sbjct: 756 ICKIHGNVEVA----------EKAAYS-----ILQLEPEDSAAYVLLSNIYANAGMWNEV 800



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 14/200 (7%)

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
            P  + TFS +    +   AL  G   H+ +I      ++ V + L+ MY KC  +E A 
Sbjct: 38  TPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAF 97

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F  + +++ V+WNAM+ GYA  GD+    +LF+ +      + D V++ ++++   H 
Sbjct: 98  KVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMP-----ERDVVSWNSLISGYLHN 152

Query: 383 DIPFDKVSEYFESMTK-----DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
                KV + F  M +     D      V   CS +   G   ++     +  ++GF   
Sbjct: 153 G-DHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQI---HGLAVKMGFDCD 208

Query: 438 GVVWRALLSASGACSDLDVA 457
            V   ALL     C  LD +
Sbjct: 209 VVTGSALLDMYAKCKKLDCS 228


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 176/547 (32%), Positives = 297/547 (54%), Gaps = 41/547 (7%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           + R+ + L       QLHC+ LK+ F S+V V TA +  Y K ++++DA+K+F  +P  +
Sbjct: 264 VFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHN 323

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           + S+N++I GY ++ +  +A  LF++L+++    D  S + AL+A   +     G+ +H 
Sbjct: 324 LQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHG 383

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN---GN 185
             +K +L   + +AN ++DMYGKCG++ +A G+F EM  +D +SWN++I A  +N   G 
Sbjct: 384 LAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGK 443

Query: 186 LELAFGFLHRLP-NPDTISYNEVI----------NGIAQFGDI----------------- 217
               FG + R    PD  +Y  V+          NG+   G I                 
Sbjct: 444 TLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVD 503

Query: 218 --------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
                   E+A  I   +      SWN+I++G+  + +  ++   F  M    V  D +T
Sbjct: 504 MYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFT 563

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           ++T+L   A L+ +  G  IH+ +IK  L + + + S L+DMYSKCG +  +  MFR   
Sbjct: 564 YATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAP 623

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389
           +++ VTWNAMI G+A +G   + +ELFE +    +++P+  TF++VL ACSH      K 
Sbjct: 624 KRDSVTWNAMICGFAYHGLGEEALELFEHM-LHENIKPNHATFVSVLRACSHVGNA-KKG 681

Query: 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
             YF+ M   Y ++P +EH   M+ ++G+ G+V  A R+I+++ F +  ++WR LLS   
Sbjct: 682 LFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICK 741

Query: 450 ACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGC 509
              +++VA  +A+ ++KL+ +    Y +L N+Y   G W   S +R  MR   L+KE GC
Sbjct: 742 IQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLKKEPGC 801

Query: 510 SWIEVEN 516
           SWIEV++
Sbjct: 802 SWIEVKD 808



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 147/569 (25%), Positives = 243/569 (42%), Gaps = 105/569 (18%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS-------------- 68
           ++ H +++ SGF   VFV+  L+  Y K  +L  A+K+F E+PQ                
Sbjct: 44  KEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVFGCAGA 103

Query: 69  ------------------VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSA 110
                             VVSWNSLISGY+Q+G  +K++ +F+++    +  D  +   +
Sbjct: 104 GRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVS 163

Query: 111 LAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI 170
           L  C  L    LG+ IH   V+   +  VV  + L+DMY KC S+ED++ VF E+ DK+ 
Sbjct: 164 LKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNW 223

Query: 171 ISWNSVIAASARNGNLELAFGFLHRLPNP------------------------------- 199
           ISW++ IA   +N  L         +                                  
Sbjct: 224 ISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCH 283

Query: 200 --------DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEA 251
                   D I     ++  A+  ++ DA  + S +P  N  S+N+++ GY    +  +A
Sbjct: 284 ALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQA 343

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
             LF ++Q      DE + S  LS  A +   + G+ +H   IK  L ++I VA+A+LDM
Sbjct: 344 FKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDM 403

Query: 312 YSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371
           Y KCG +  A  +F  +  ++ V+WNA+IT   +N    K +  F  +   + ++PD  T
Sbjct: 404 YGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSK-MEPDEFT 462

Query: 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC-------CSMI--------RLM 416
           + +VL AC+      + +  +   +    G+K  V          C M+        RL 
Sbjct: 463 YGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLE 522

Query: 417 GQKGEVWRA--------------QRMIR---ELGFGSYGVVWRALLSASGACSDLDVARI 459
            Q    W A              QR      E+G       +  +L      + + + + 
Sbjct: 523 EQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQ 582

Query: 460 SAAEVIKLEGDSD-YVYVMLCNLYTSHGN 487
             A++IKLE  SD Y+   L ++Y+  GN
Sbjct: 583 IHAQMIKLELLSDVYITSTLVDMYSKCGN 611



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 169/339 (49%), Gaps = 17/339 (5%)

Query: 49  RKINSLADAH-KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           R +    +AH  M +    P+V   N LI  YV+      A  +F E+ + +I     S+
Sbjct: 38  RALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIV----SW 93

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
            + +  C   G ++L  A+ + +  +     VV  N LI  Y + G ++ +I VF +M D
Sbjct: 94  NTMVFGCAGAGRMELAQAVFNSMPHHG---DVVSWNSLISGYLQNGDIQKSIAVFLKMRD 150

Query: 168 KDIISWNSVIAASARNGNL--ELAFGF-LHRLP-----NPDTISYNEVINGIAQFGDIED 219
             ++  ++ +A S +  +L  +   G  +H +      + D ++ + +++  A+   +ED
Sbjct: 151 LGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLED 210

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
           ++ + S +P  N  SW++ + G V  +++   L LF EMQ K + + + T++++    AG
Sbjct: 211 SLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAG 270

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
           LSA   G  +H   +K    + ++V +A LDMY+KC  +  A  +F  L   NL ++NAM
Sbjct: 271 LSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAM 330

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           I GYARN    +  +LF QL+       D V+    L+A
Sbjct: 331 IIGYARNEQGFQAFKLFLQLQK-NSFSFDEVSLSGALSA 368



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 134/276 (48%), Gaps = 33/276 (11%)

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
           +F+     C    +L+ G   H+ ++       V + NCLI MY KC ++E A  VF EM
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPNP-DTISYNEVINGIAQFGDIEDAIMIL 224
             +DI+SWN+++   A  G +ELA    + +P+  D +S+N +I+G  Q GDI+ +I + 
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAV- 144

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
                                         F +M+   V  D  T +  L   + L    
Sbjct: 145 ------------------------------FLKMRDLGVMFDHTTLAVSLKICSLLEDQV 174

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G+ IH   ++ G D  +V  SAL+DMY+KC  +E +  +F  L  KN ++W+A I G  
Sbjct: 175 LGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCV 234

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +N  L + ++LF++++  + +     T+ +V  +C+
Sbjct: 235 QNDQLLRGLKLFKEMQR-KGIGVSQSTYASVFRSCA 269



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 153/320 (47%), Gaps = 27/320 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+    +L+A +     +   ++H  I+KSG    +FV +AL+  Y K   + +A K+
Sbjct: 458 PDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKI 517

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
              + + ++VSWN++ISG+    K   +   F  +    +  D +++ + L  C  L ++
Sbjct: 518 HYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATV 577

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IH++++K  L   V I + L+DMY KCG++ D++ +F +   +D ++WN++I   
Sbjct: 578 GLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGF 637

Query: 181 ARNG----NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
           A +G     LEL    LH    P+  ++  V+   +  G+ +  +     M S     P 
Sbjct: 638 AYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQ 697

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              ++ ++       +V EAL L      +D+P +               A+ W  L+  
Sbjct: 698 LEHYSCMVDILGRSGQVEEALRLI-----QDMPFEA-------------DAIIWRTLLSI 739

Query: 292 CVIKQGLDASIVVASALLDM 311
           C I+  ++ +   AS+LL +
Sbjct: 740 CKIQGNVEVAEKAASSLLKL 759


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 178/536 (33%), Positives = 289/536 (53%), Gaps = 41/536 (7%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           Y + LH Y +K+G +++VFV +AL+  Y K   + +  ++F E+P  +VVSW ++I+G V
Sbjct: 134 YGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLV 193

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           ++G  ++AL  F E+ RS +  D+Y+F  AL AC   G+L  G  IH++ +K   +    
Sbjct: 194 RAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSF 253

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP--- 197
           +AN L  MY KCG +E  + +F +M  +D++SW ++I    + G  E A     R+    
Sbjct: 254 VANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESD 313

Query: 198 -NPDTISYNEVINGIAQFGDIE---------------------DAIM------------- 222
            +P+  ++  VI+G A    IE                     ++IM             
Sbjct: 314 VSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSS 373

Query: 223 -ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            I   M   +  SW++I+ GY     V EA  L   M+ +     E+  +++LS    ++
Sbjct: 374 VIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMA 433

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  +H+ V+  GL+ + +V SAL++MY KCG +E A  +F +    ++V+W AMI 
Sbjct: 434 ILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMIN 493

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYA +G   +VI+LFE++  V  L+PDSVTF+ VL+ACSH  +  D    YF +M+K Y 
Sbjct: 494 GYAEHGYSREVIDLFEKIPRV-GLRPDSVTFIGVLSACSHAGL-VDLGFHYFNAMSKKYQ 551

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I P+ EH   MI L+ + G +  A+ MI  + F    VVW  LL A     D++  R +A
Sbjct: 552 ISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTA 611

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
             +++LE +    ++ L N+Y S G W  A+ +R  M+ +G+ KE G SWI+V+++
Sbjct: 612 ERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDL 667



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 179/375 (47%), Gaps = 41/375 (10%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE-RSEIYADAYSFT 108
           K   L +A +MF ++ Q   +SW +LISGYV +    +AL LF  +   S +  D +  +
Sbjct: 61  KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 120

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
            A  ACG    +  G  +H   VK  L   V + + L+DMY K G + +   VF EM  +
Sbjct: 121 LAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRL-------------------PNPDTISYNEVIN 209
           +++SW ++I    R G  + A  +   +                    +   ++Y   I+
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240

Query: 210 GIA--------------------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
             A                    + G +E  + +   M   +  SW +I+T  V   +  
Sbjct: 241 AQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEE 300

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
            A+  F  M+  DV  +EYTF+ ++SG A L+ + WG  +H+ ++  GL AS+ V ++++
Sbjct: 301 CAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIM 360

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
            MY+KCGQ+  +  +F  + R+++V+W+ +I GY + G +++  EL   ++ +   +P  
Sbjct: 361 TMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMR-MEGPKPTE 419

Query: 370 VTFLNVLAACSHTDI 384
               +VL+AC +  I
Sbjct: 420 FALASVLSACGNMAI 434



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/422 (22%), Positives = 186/422 (44%), Gaps = 48/422 (11%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + Y     L+A +D G   Y +++H   +K GF  + FV+  L   Y K   L     +F
Sbjct: 216 DSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLF 275

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            ++    VVSW ++I+  VQ G+   A+  F+ +  S++  + Y+F + ++ C  L  ++
Sbjct: 276 EKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIE 335

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  +H+ I+   L   + + N ++ MY KCG +  +  +F EM  +DI+SW+++IA   
Sbjct: 336 WGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYX 395

Query: 182 RNGNLELAFGFLH--RLPNPDTISY----------------------------------- 204
           + G++  AF  L   R+  P    +                                   
Sbjct: 396 QGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAM 455

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             + +IN   + G IE+A  I  +  + +  SW +++ GY       E + LF ++    
Sbjct: 456 VLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVG 515

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIA 321
           +  D  TF  +LS  +    +  G    + + K+  +  S      ++D+  + G++  A
Sbjct: 516 LRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDA 575

Query: 322 DSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD----SVTFLNVL 376
           + M  ++   ++ V W+ ++     +GD+ +     E+   +  L+P+     +T  N+ 
Sbjct: 576 EHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAER---ILQLEPNCAGTHITLANIY 632

Query: 377 AA 378
           A+
Sbjct: 633 AS 634



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 12/283 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNEY    ++   ++L    + +QLH  IL  G  +++ V  ++M  Y K   L  +  +
Sbjct: 316 PNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVI 375

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+ +  +VSW+++I+GY Q G   +A  L   +         ++  S L+ACG +  L
Sbjct: 376 FHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAIL 435

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H+ ++   LE   ++ + LI+MY KCGS+E+A  +F    + DI+SW ++I   
Sbjct: 436 EHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGY 495

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A +G          ++P     PD++++  V++  +  G ++      ++M      SP+
Sbjct: 496 AEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPS 555

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
              +  ++       R+ +A H+   +++     D+  +ST+L
Sbjct: 556 KEHYGCMIDLLCRAGRLSDAEHM---IEAMPFHRDDVVWSTLL 595



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 103/199 (51%), Gaps = 5/199 (2%)

Query: 183 NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGY 242
           N NL     F+ +   P++   N+ +  + + G + +A  +   M   +  SW ++++GY
Sbjct: 34  NDNLSQNIHFISQTDLPES---NKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGY 90

Query: 243 VNRNRVPEALHLFGEMQSKD-VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
           VN N   EAL LF  M+ +  + +D +  S         S + +G L+H   +K GL  S
Sbjct: 91  VNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNS 150

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
           + V SALLDMY+K G++     +F  +  +N+V+W A+ITG  R G   + +  F ++  
Sbjct: 151 VFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWR 210

Query: 362 VRDLQPDSVTFLNVLAACS 380
            R ++ DS TF   L AC+
Sbjct: 211 SR-VEYDSYTFAIALKACA 228


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 178/536 (33%), Positives = 289/536 (53%), Gaps = 41/536 (7%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           Y + LH Y +K+G +++VFV +AL+  Y K   + +  ++F E+P  +VVSW ++I+G V
Sbjct: 134 YGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLV 193

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           ++G  ++AL  F E+ RS +  D+Y+F  AL AC   G+L  G  IH++ +K   +    
Sbjct: 194 RAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSF 253

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP--- 197
           +AN L  MY KCG +E  + +F +M  +D++SW ++I    + G  E A     R+    
Sbjct: 254 VANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESD 313

Query: 198 -NPDTISYNEVINGIAQFGDIE---------------------DAIM------------- 222
            +P+  ++  VI+G A    IE                     ++IM             
Sbjct: 314 VSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSS 373

Query: 223 -ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            I   M   +  SW++I+ GY     V EA  L   M+ +     E+  +++LS    ++
Sbjct: 374 VIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMA 433

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  +H+ V+  GL+ + +V SAL++MY KCG +E A  +F +    ++V+W AMI 
Sbjct: 434 ILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMIN 493

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYA +G   +VI+LFE++  V  L+PDSVTF+ VL+ACSH  +  D    YF +M+K Y 
Sbjct: 494 GYAEHGYSREVIDLFEKIPRV-GLRPDSVTFIGVLSACSHAGL-VDLGFRYFNAMSKKYQ 551

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I P+ EH   MI L+ + G +  A+ MI  + F    VVW  LL A     D++  R +A
Sbjct: 552 ISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTA 611

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
             +++LE +    ++ L N+Y S G W  A+ +R  M+ +G+ KE G SWI+V+++
Sbjct: 612 ERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDL 667



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 180/375 (48%), Gaps = 41/375 (10%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE-RSEIYADAYSFT 108
           K   L +A +MF ++ Q   +SW +LISGYV +    +AL LF  +   S +  D +  +
Sbjct: 61  KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 120

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
            A  ACG    +  G  +H   VK  L   V + + L+DMY K G + +   VF EM  +
Sbjct: 121 LAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRL-------------------PNPDTISYNEVIN 209
           +++SW ++I    R G  + A  +   +                    +   ++Y   I+
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240

Query: 210 GIA--------------------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
             A                    + G +E  + +   M   +  SW +I+T  V   +  
Sbjct: 241 AQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEE 300

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
            A+  F  M+  DV  +EYTF+ ++SG A L+ + WG  +H+ ++  GL AS+ V ++++
Sbjct: 301 CAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIM 360

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
            MY+KCGQ+  +  +F  + R+++V+W+ +I GY++ G +++  EL   ++ +   +P  
Sbjct: 361 TMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMR-MEGPKPTE 419

Query: 370 VTFLNVLAACSHTDI 384
               +VL+AC +  I
Sbjct: 420 FALASVLSACGNMAI 434



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/422 (22%), Positives = 187/422 (44%), Gaps = 48/422 (11%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + Y     L+A +D G   Y +++H   +K GF  + FV+  L   Y K   L     +F
Sbjct: 216 DSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLF 275

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            ++    VVSW ++I+  VQ G+   A+  F+ +  S++  + Y+F + ++ C  L  ++
Sbjct: 276 EKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIE 335

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  +H+ I+   L   + + N ++ MY KCG +  +  +F EM  +DI+SW+++IA  +
Sbjct: 336 WGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYS 395

Query: 182 RNGNLELAFGFLH--RLPNPDTISY----------------------------------- 204
           + G++  AF  L   R+  P    +                                   
Sbjct: 396 QGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAM 455

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             + +IN   + G IE+A  I  +  + +  SW +++ GY       E + LF ++    
Sbjct: 456 VLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVG 515

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIA 321
           +  D  TF  +LS  +    +  G    + + K+  +  S      ++D+  + G++  A
Sbjct: 516 LRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDA 575

Query: 322 DSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD----SVTFLNVL 376
           + M  ++   ++ V W+ ++     +GD+ +     E+   +  L+P+     +T  N+ 
Sbjct: 576 EHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAER---ILQLEPNCAGTHITLANIY 632

Query: 377 AA 378
           A+
Sbjct: 633 AS 634



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 147/329 (44%), Gaps = 27/329 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNEY    ++   ++L    + +QLH  IL  G  +++ V  ++M  Y K   L  +  +
Sbjct: 316 PNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVI 375

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+ +  +VSW+++I+GY Q G   +A  L   +         ++  S L+ACG +  L
Sbjct: 376 FHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAIL 435

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H+ ++   LE   ++ + LI+MY KCGS+E+A  +F    + DI+SW ++I   
Sbjct: 436 EHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGY 495

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A +G          ++P     PD++++  V++  +  G ++      ++M      SP+
Sbjct: 496 AEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPS 555

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  ++       R+ +A H+   M     P                  + W  L+ +
Sbjct: 556 KEHYGCMIDLLCRAGRLSDAEHMIEAM-----PFHR-------------DDVVWSTLLRA 597

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEI 320
           C +   ++     A  +L +   C    I
Sbjct: 598 CRVHGDVERGRRTAERILQLEPNCAGTHI 626



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 103/199 (51%), Gaps = 5/199 (2%)

Query: 183 NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGY 242
           N NL     F+ +   P++   N+ +  + + G + +A  +   M   +  SW ++++GY
Sbjct: 34  NDNLSQNIHFISQTDLPES---NKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGY 90

Query: 243 VNRNRVPEALHLFGEMQSKD-VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
           VN N   EAL LF  M+ +  + +D +  S         S + +G L+H   +K GL  S
Sbjct: 91  VNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNS 150

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
           + V SALLDMY+K G++     +F  +  +N+V+W A+ITG  R G   + +  F ++  
Sbjct: 151 VFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWR 210

Query: 362 VRDLQPDSVTFLNVLAACS 380
            R ++ DS TF   L AC+
Sbjct: 211 SR-VEYDSYTFAIALKACA 228


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 181/553 (32%), Positives = 293/553 (52%), Gaps = 44/553 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N Y    +L+  + LG    C+++H Y+LK GF SN  V  +L+  Y K   +  AH +F
Sbjct: 194 NCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLF 253

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            E+ +P VVSWNS+I+G V +G     L +F+++    +  D  +  S L AC  +G+L 
Sbjct: 254 DELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLS 313

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           LG A+H   VK      VV +N L+DMY KCG++  A  VF +M D  I+SW S+IAA  
Sbjct: 314 LGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYV 373

Query: 182 RNGNLELAFGFLHRLPNP--------------------------DTISY----------- 204
           R G    A G    + +                           D  SY           
Sbjct: 374 REGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLP 433

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP-EALHLFGEMQSK 261
             N +IN  A+ G +E+A ++ S +P  +  SWN+++ GY ++N +P EAL LF +MQ +
Sbjct: 434 VTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGY-SQNLLPNEALELFLDMQKQ 492

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
             P D+ T + +L   AGL+AL  G  IH  ++++G  + + VA AL+DMY+KCG + +A
Sbjct: 493 FKP-DDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLA 551

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  + +K+L++W  MI GY  +G   + I  F +++ +  ++PD  +F  +L ACSH
Sbjct: 552 QLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMR-IAGIEPDESSFSAILNACSH 610

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           + +  ++  ++F SM  + G++P +EH   ++ L+ + G + +A + I  +       +W
Sbjct: 611 SGL-LNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIW 669

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
             LLS      D+ +A   A  + +LE D+   YV+L N+Y     W+    +R  M++R
Sbjct: 670 GVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKR 729

Query: 502 GLRKEAGCSWIEV 514
           G ++  GCSWIEV
Sbjct: 730 GFKQNPGCSWIEV 742



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 202/422 (47%), Gaps = 56/422 (13%)

Query: 13  SSDLGWDTYC---------------QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
           S +LG ++YC               +++H  I+ +G   +  +   L+  Y     L   
Sbjct: 89  SYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQG 148

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
            K+F +I    V  WN L+S Y + G +R++++LF ++++  +  + Y+FT  L     L
Sbjct: 149 RKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAAL 208

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN--- 174
           G ++    +H  ++K        + N LI  Y K G VE A  +F E+ + D++SWN   
Sbjct: 209 GKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMI 268

Query: 175 --------------------------------SVIAASARNGNLELA---FGF-LHRLPN 198
                                           SV+ A A  GNL L     GF +    +
Sbjct: 269 NGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFS 328

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
            + +  N +++  ++ G++  A  +   M      SW SI+  YV      +A+ LF EM
Sbjct: 329 EEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEM 388

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           QSK V  D YT ++++   A  S+L  G  +HS VIK G+ +++ V +AL++MY+KCG V
Sbjct: 389 QSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSV 448

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           E A  +F  +  K++V+WN MI GY++N    + +ELF  L   +  +PD +T   VL A
Sbjct: 449 EEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELF--LDMQKQFKPDDITMACVLPA 506

Query: 379 CS 380
           C+
Sbjct: 507 CA 508



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 154/359 (42%), Gaps = 42/359 (11%)

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F         + N+ I+ + + G  R A+ L  + +  E+  ++Y   S L  C +  SL
Sbjct: 53  FTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSY--CSVLQLCAEKKSL 110

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +HS I+   +     +   L+ MY  CG +     +F ++++  +  WN +++  
Sbjct: 111 EDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEY 170

Query: 181 ARNGNLELAFGFLHRLPN---------------------------------------PDT 201
           A+ GN   +     ++                                          +T
Sbjct: 171 AKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNT 230

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I    +FG +E A  +   +  P+  SWNS++ G V        L +F +M   
Sbjct: 231 AVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLIL 290

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V +D  T  ++L   A +  L+ G  +H   +K      +V ++ LLDMYSKCG +  A
Sbjct: 291 GVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGA 350

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             +F  +    +V+W ++I  Y R G  +  I LF+++++ + ++PD  T  +++ AC+
Sbjct: 351 TEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQS-KGVRPDIYTVTSIVHACA 408



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 116/265 (43%), Gaps = 34/265 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  +  +L A + L      +++H +IL+ G+ S++ V+ AL+  Y K   L  A  +
Sbjct: 495 PDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLL 554

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP+  ++SW  +I+GY   G   +A++ F E+  + I  D  SF++ L AC   G L
Sbjct: 555 FDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLL 614

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G    +                   M  +CG            ++  +  +  V+   
Sbjct: 615 NEGWKFFN------------------SMRNECG------------VEPKLEHYACVVDLL 644

Query: 181 ARNGNLELAFGFLHRLP-NPDTISYNEVINGIAQFGDIEDAIMILSSM--PSPNSSSWNS 237
           AR GNL  A+ F+  +P  PDT  +  +++G     D++ A  +   +    P+++ +  
Sbjct: 645 ARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYV 704

Query: 238 ILTG-YVNRNRVPEALHLFGEMQSK 261
           +L   Y    +  E   L   MQ +
Sbjct: 705 VLANVYAEAEKWEEVKKLRKRMQKR 729


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 174/533 (32%), Positives = 294/533 (55%), Gaps = 42/533 (7%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLAD-AHKMFVEIPQPSVVSWNSLISGYVQS 82
           QLH + LK+ F ++V + TA +  Y K N+L+D ++++F  +P  ++ S+N++I GY +S
Sbjct: 232 QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARS 291

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            K  +AL +F  L++S +  D  S + A  AC  +     G+ +H   +K   +  + +A
Sbjct: 292 DKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVA 351

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPN 198
           N ++DMYGKCG++ +A  VF EM+ +D +SWN++IAA  +NGN    L L    L     
Sbjct: 352 NAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGME 411

Query: 199 PDTISYNEVIN-----------------------------GIA------QFGDIEDAIMI 223
           PD  +Y  V+                              GIA      + G +E A  +
Sbjct: 412 PDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKL 471

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +      SWN+I++G+  + +  EA   F +M    V  D +T++T+L   A L  +
Sbjct: 472 HDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTV 531

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH+ +IK+ L +   ++S L+DMYSKCG ++    +F     ++ VTWNAM+ GY
Sbjct: 532 ELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGY 591

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A++G   + +++FE ++ + +++P+  TFL VL AC H  +  +K   YF SM  +YG+ 
Sbjct: 592 AQHGLGEEALKIFEYMQ-LENVKPNHATFLAVLRACGHMGL-VEKGLHYFHSMLSNYGLD 649

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           P +EH   ++ +MG+ G+V +A  +I  + F +  V+WR LLS      +++VA  +A  
Sbjct: 650 PQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYS 709

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +++LE +    YV+L N+Y + G W+  + +R  MR  GL+KE GCSWIE+++
Sbjct: 710 ILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKS 762



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 180/393 (45%), Gaps = 34/393 (8%)

Query: 8   HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP 67
           H+ +  SD       +Q H  ++ + F   VFV+  L+  Y K + L  A K+F  +PQ 
Sbjct: 47  HIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQR 106

Query: 68  SVVSWNSLISGYVQSGKYRKALNLF----------VEL-----ERSEIYADAYSFTSALA 112
             VSWN+++ GY   G    A  LF          VEL      R     D  +F   L 
Sbjct: 107 DTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLK 166

Query: 113 ACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED----AIGVFGEMIDK 168
           +C  L     G+ IH   VK   +  VV  + L+DMY KC    D     + +F EM   
Sbjct: 167 SCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEM--- 223

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIED-AIMILSSM 227
                       A  G L+L    L      D +     ++   +  ++ D +  + +S+
Sbjct: 224 ----------QKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSL 273

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
           P+ N  S+N+I+ GY   ++  EAL +F  +Q   + +DE + S      A +     G+
Sbjct: 274 PNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGL 333

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
            +H   +K    ++I VA+A+LDMY KCG +  A  +F  +  ++ V+WNA+I  + +NG
Sbjct: 334 QVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNG 393

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +  K + LF  +     ++PD  T+ +VL AC+
Sbjct: 394 NEEKTLSLFVWMLQ-SGMEPDEFTYGSVLKACA 425



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 186/400 (46%), Gaps = 46/400 (11%)

Query: 11  RASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVV 70
           RA + +  D    Q+H   +KS   SN+ V+ A++  Y K  +L +A  +F E+     V
Sbjct: 321 RACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAV 380

Query: 71  SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKI 130
           SWN++I+ + Q+G   K L+LFV + +S +  D +++ S L AC    +L  GM IH++I
Sbjct: 381 SWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRI 440

Query: 131 VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF 190
           +K  +     +   LIDMY KCG +E A  +   + ++ ++SWN++I+  +     E A 
Sbjct: 441 IKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQ 500

Query: 191 GFLHRL----PNPDTISYNEVINGIAQF-------------------------------- 214
               ++     +PD  +Y  +++  A                                  
Sbjct: 501 KTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMY 560

Query: 215 ---GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271
              G+++D  +I    P+ +  +WN+++ GY       EAL +F  MQ ++V  +  TF 
Sbjct: 561 SKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFL 620

Query: 272 TMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL-C 329
            +L     +  +  G+   HS +   GLD  +   S ++D+  + GQV  A  +   +  
Sbjct: 621 AVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPF 680

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLK-TVRDLQPD 368
             + V W  +++    +G+    +E+ E+   ++  L+P+
Sbjct: 681 EADAVIWRTLLSXCKIHGN----VEVAEKAAYSILQLEPE 716



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 117/240 (48%), Gaps = 17/240 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    +L   ++L      +Q+H  I+K    S+ ++S+ L+  Y K  ++ D   +
Sbjct: 513 PDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLI 572

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F + P    V+WN+++ GY Q G   +AL +F  ++   +  +  +F + L ACG +G +
Sbjct: 573 FEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLV 632

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF-GEMIDKDIISWNSVIA 178
           + G+   HS +  Y L+  +   +C++D+ G+ G V  A+ +  G   + D + W ++++
Sbjct: 633 EKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLS 692

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
               +GN+E+A          +  +Y+     I Q    + A  +L S    N+  WN +
Sbjct: 693 XCKIHGNVEVA----------EKAAYS-----ILQLEPEDSAAYVLLSNIYANAGMWNEV 737



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 125/303 (41%), Gaps = 50/303 (16%)

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
           +F+     C    +L  G   H++++    +  V + NCLI MY KC  +  A  VF  M
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGM 103

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPNP-------------------DTISYNE 206
             +D +SWN+++   A  G++ +A      +P                     D  ++  
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAV 163

Query: 207 VINGIAQFGDIEDAIMI----LSSMPSPNSSSWNSILTGY----VNRNRVPEALHLFGEM 258
           V+   +   D    I I    +      +  + +++L  Y    V  + +   L LF EM
Sbjct: 164 VLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEM 223

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           Q                  AG+ AL     +H   +K      +V+ +A LDMY KC  +
Sbjct: 224 QK-----------------AGVGALQ----LHGHALKTDFGTDVVIGTATLDMYMKCNNL 262

Query: 319 -EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
            + ++ +F SL   NL ++NA+I GYAR+    + + +F  L+    L  D V+      
Sbjct: 263 SDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQK-SGLGLDEVSLSGAXR 321

Query: 378 ACS 380
           AC+
Sbjct: 322 ACA 324



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 14/132 (10%)

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
            P  + TFS +    +   AL  G   H+ +I      ++ V + L+ MY KC  +  A 
Sbjct: 38  TPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAF 97

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDL--------------TKVIELFEQLKTVRDLQPD 368
            +F  + +++ V+WNAM+ GYA  GD+                V+ELF+          D
Sbjct: 98  KVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFD 157

Query: 369 SVTFLNVLAACS 380
             TF  VL +CS
Sbjct: 158 RTTFAVVLKSCS 169


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 174/537 (32%), Positives = 305/537 (56%), Gaps = 46/537 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+HC  +K GF+ +V V T+L+  Y K  S+ D  ++F E+   +VVSW SL++GY Q+
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQN 171

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   +AL LF +++   I  + ++F + L      G+++ G+ +H+ ++K  L+  + + 
Sbjct: 172 GLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVG 231

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-NLELAFGFLHRL----- 196
           N +++MY K   V DA  VF  M +++ +SWNS+IA    NG +LE AF   +R+     
Sbjct: 232 NSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLE-AFELFYRMRLEGV 290

Query: 197 --------------PNPDTISYN-----EVINGIAQF---------------GDIEDAIM 222
                          N   +S+      +VI   + F                +I+DA  
Sbjct: 291 KLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFK 350

Query: 223 ILSSMPS-PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD-VPMDEYTFSTMLSGIAGL 280
           +   M    N  SW +I++GYV   R   A++LF +M+ ++ V  +E+TFS++L+  A  
Sbjct: 351 LFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAP 410

Query: 281 SA-LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
           +A +  G   HSC IK G   ++ V+SAL+ MY+K G +E A+ +F+    ++LV+WN+M
Sbjct: 411 TASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSM 470

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKD 399
           I+GYA++G   K +++FE++++ ++L+ D +TF+ V++AC+H  +  ++   YF+ M KD
Sbjct: 471 ISGYAQHGCGKKSLKIFEEMRS-KNLELDGITFIGVISACTHAGL-VNEGQRYFDLMVKD 528

Query: 400 YGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARI 459
           Y I PT+EH   M+ L  + G + +A  +I ++ F +   +WR LL+A     ++ +  +
Sbjct: 529 YHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGEL 588

Query: 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +A ++I L+      YV+L N+Y + GNW   + +R  M  + ++KEAG SWIEV+N
Sbjct: 589 AAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKN 645



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 198/417 (47%), Gaps = 47/417 (11%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           + ++F E PQ  +   N L+  + ++ + ++ALNLF+ L RS    D  S +  L  CG 
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           L    +G  +H + +K      V +   L+DMY K  SVED   VF EM  K+++SW S+
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 177 IAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIE-------------- 218
           +A   +NG  E A     ++      P+  ++  V+ G+A  G +E              
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 219 ---------------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
                                DA  +  SM + N+ SWNS++ G+V      EA  LF  
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M+ + V + +  F+T++   A +  +++   +H  VIK G D  + + +AL+  YSKC +
Sbjct: 285 MRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSE 344

Query: 318 VEIADSMFRSLCR----KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           +   D  F+  C     +N+V+W A+I+GY +NG   + + LF Q++    ++P+  TF 
Sbjct: 345 I---DDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFS 401

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
           +VL AC+      ++  + F S +   G    +    +++ +  ++G +  A  + +
Sbjct: 402 SVLNACAAPTASVEQ-GKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFK 457



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 136/251 (54%), Gaps = 12/251 (4%)

Query: 20  TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ-PSVVSWNSLISG 78
           ++ +QLHC ++K+G   ++ + TALM  Y K + + DA K+F  +    +VVSW ++ISG
Sbjct: 311 SFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISG 370

Query: 79  YVQSGKYRKALNLFVELERSE-IYADAYSFTSALAAC-GQLGSLQLGMAIHSKIVKYSLE 136
           YVQ+G+  +A+NLF ++ R E +  + ++F+S L AC     S++ G   HS  +K    
Sbjct: 371 YVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFS 430

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196
             + +++ L+ MY K G++E A  VF   +D+D++SWNS+I+  A++G  + +      +
Sbjct: 431 NALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEM 490

Query: 197 PNP----DTISYNEVINGIAQFGDIEDA-----IMILSSMPSPNSSSWNSILTGYVNRNR 247
            +     D I++  VI+     G + +      +M+      P    ++ ++  Y     
Sbjct: 491 RSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGM 550

Query: 248 VPEALHLFGEM 258
           + +A+ L  +M
Sbjct: 551 LEKAMDLINKM 561



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 113/225 (50%), Gaps = 6/225 (2%)

Query: 1   PNEYVLFHLLRA-SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           PNE+    +L A ++        +Q H   +KSGF + + VS+AL+  Y K  ++  A++
Sbjct: 395 PNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANE 454

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F       +VSWNS+ISGY Q G  +K+L +F E+    +  D  +F   ++AC   G 
Sbjct: 455 VFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGL 514

Query: 120 LQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
           +  G      +VK Y +   +   +C++D+Y + G +E A+ +  +M        W +++
Sbjct: 515 VNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLL 574

Query: 178 AASARNGNL---ELAFGFLHRLPNPDTISYNEVINGIAQFGDIED 219
           AA   + N+   ELA   L  L   D+ +Y  + N  A  G+ ++
Sbjct: 575 AACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQE 619


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 185/555 (33%), Positives = 294/555 (52%), Gaps = 44/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    +L+A S LG   Y + +H +++KSGF  +V V ++ +G Y K N   DA K+
Sbjct: 296 PDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKL 355

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+  V SWN++IS Y Q G+  KAL LF E++ S    D+ + T+ +++C +L  L
Sbjct: 356 FDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDL 415

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA-- 178
           + G  IH ++V+        +++ L+DMYGKCG +E A  VF ++  K+++SWNS+IA  
Sbjct: 416 ERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGY 475

Query: 179 ---------------------------------ASARNGNLELAFGFLH-----RLPNPD 200
                                            A +R+ NL+L   F+H          D
Sbjct: 476 SLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLG-KFIHGYIIRNRVEAD 534

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               + +I+   + G+I  A  +  +MP  N  SWN +++GYV      EAL +F +M+ 
Sbjct: 535 IFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRK 594

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             V  D  TF+++L   + L+ L  G  IH+ +I+  L+ + VV  ALLDMY+KCG V+ 
Sbjct: 595 AGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDE 654

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  L  ++ V+W +MI  Y  +G   + ++LFE+++   D +PD VTFL +L+ACS
Sbjct: 655 ALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQ-SDAKPDKVTFLAILSACS 713

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV- 439
           H  +  D+   YF  M  +YG KP VEH   +I L+G+ G +  A  +++        V 
Sbjct: 714 HAGL-VDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVG 772

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +   L SA      LD+       +I+ + D    Y++L N+Y S   WD    +R  ++
Sbjct: 773 LLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIK 832

Query: 500 ERGLRKEAGCSWIEV 514
           E GL+K  GCSWIEV
Sbjct: 833 ELGLKKNPGCSWIEV 847



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 141/302 (46%), Gaps = 42/302 (13%)

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIAAS 180
           LG  IH KIV   L+  + +   LI++Y  C   + A  VF  + +  DI  WN ++AA 
Sbjct: 213 LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAAC 272

Query: 181 ARNGNLELAFGFLHRLPN-----PDTISYNEVINGIAQFGDI------------------ 217
            +N          HRL +     PD  +Y  V+   +  G +                  
Sbjct: 273 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMD 332

Query: 218 -----------------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                            EDAI +   MP  + +SWN++++ Y    +  +AL LF EM+ 
Sbjct: 333 VVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKV 392

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
                D  T +T++S  A L  L  G  IH  +++ G      V+SAL+DMY KCG +E+
Sbjct: 393 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM 452

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  + RKN+V+WN+MI GY+  GD    IELF ++     ++P   T  ++L ACS
Sbjct: 453 AKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDE-EGIRPTLTTLSSILMACS 511

Query: 381 HT 382
            +
Sbjct: 512 RS 513


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 172/534 (32%), Positives = 287/534 (53%), Gaps = 47/534 (8%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINS-LADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q+H +++KSG   + FV  +L+  Y K+ +   +  K+F  +    V+SW S+ISGYV+ 
Sbjct: 80  QIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRV 139

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           GK   +L LF ++    +  +A++ ++ + AC +LG L+LG   H  ++    +   VIA
Sbjct: 140 GKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIA 199

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
           + LIDM+G+  +++DA  +F E+++ D I W S+I+A  RN   + A  F + +      
Sbjct: 200 SALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGM 259

Query: 199 -PDTISYNEVINGIAQFGDIE-----------------------------------DAIM 222
            PD  ++  V+      G ++                                   ++  
Sbjct: 260 CPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQR 319

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           I   MP  NS SW+++L GY         + +F +M+  D+    Y F T+L   AGL+A
Sbjct: 320 IFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDL----YCFGTILRTCAGLAA 375

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           +  G  +H   I++G    ++V SAL+D+Y+KCG +E A ++F  +  +NL+TWN+MI G
Sbjct: 376 VRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGG 435

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           +A+NG   + + +F Q+     ++PD ++F+ +L ACSH  +  D+  EYF SMTKDYGI
Sbjct: 436 FAQNGRGEEALRIFNQM-VKEGIKPDYISFIGILFACSHRGL-VDEGREYFISMTKDYGI 493

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
           K  +EH   M+ L+G+ G +  A+ +I    F     +W ALL A   C++ ++A   A 
Sbjct: 494 KVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAK 553

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            V++LE D    YV+L N+Y + G W+ A  +R  M++RG+ K  G SWIE +N
Sbjct: 554 RVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIETKN 607



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 191/409 (46%), Gaps = 47/409 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + L  +++A S+LG     +  H  +L  GF SN  +++AL+  + +  +L DA ++
Sbjct: 159 PNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQL 218

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGS 119
           F E+ +P  + W S+IS   ++  + +AL  F  ++R   +  D ++F + L ACG LG 
Sbjct: 219 FDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGR 278

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+ G  +H+K++       VV+ + L+DMYGKCGSV ++  +F  M  K+ +SW++++  
Sbjct: 279 LKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGG 338

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEV-------------------------------- 207
             +NG+ +       ++   D   +  +                                
Sbjct: 339 YCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVE 398

Query: 208 ---INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
              ++  A+ G IE A  I   MP  N  +WNS++ G+    R  EAL +F +M  + + 
Sbjct: 399 SALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIK 458

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADS 323
            D  +F  +L   +    +  G      + K  G+   I   S ++D+  + G +E A+ 
Sbjct: 459 PDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEI 518

Query: 324 MFR-SLCRKNLVTWNAMITGYARNGDLTKVI--ELFEQL-KTVRDLQPD 368
           +   S  R +   W A++      G  T     E+ E++ K V +L+PD
Sbjct: 519 LIETSDFRDDSSLWAALL------GACTTCTNYEIAERIAKRVMELEPD 561



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 160/342 (46%), Gaps = 48/342 (14%)

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           +SG+   AL L   ++  EI A    + S L  C ++ +   G+ IH+ ++K  LE    
Sbjct: 36  KSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRF 95

Query: 141 IANCLIDMYGKCGS-VEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHR 195
           + N L+ +Y K G+   +   VF  +  KD+ISW S+I+   R G    +LEL +  L  
Sbjct: 96  VGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAY 155

Query: 196 LPNPDTISYNEVINGIAQFGD-----------------------------------IEDA 220
              P+  + + VI   ++ GD                                   ++DA
Sbjct: 156 GVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDA 215

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM--DEYTFSTMLSGIA 278
             +   +  P++  W SI++     +   EAL  F  MQ +D  M  D +TF T+L+   
Sbjct: 216 RQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQ-RDHGMCPDGFTFGTVLTACG 274

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            L  L  G  +H+ VI  G   ++VV S+L+DMY KCG V  +  +F  +  KN V+W+A
Sbjct: 275 NLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSA 334

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           ++ GY +NGD   VI++F +++ V     D   F  +L  C+
Sbjct: 335 LLGGYCQNGDFKSVIQIFRKMEKV-----DLYCFGTILRTCA 371



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 5/229 (2%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
           Y    +LR  + L      +++HC  ++ G   +V V +AL+  Y K   +  A  +F +
Sbjct: 361 YCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQ 420

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
           +P  ++++WNS+I G+ Q+G+  +AL +F ++ +  I  D  SF   L AC   G +  G
Sbjct: 421 MPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEG 480

Query: 124 MAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDA-IGVFGEMIDKDIISWNSVIAASA 181
                 + K Y ++ G+   +C++D+ G+ G +E+A I +       D   W +++ A  
Sbjct: 481 REYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACT 540

Query: 182 RNGNLELAFGFLHRLP--NPD-TISYNEVINGIAQFGDIEDAIMILSSM 227
              N E+A     R+    PD  +SY  + N     G   DA+ I   M
Sbjct: 541 TCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLM 589



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 103/220 (46%), Gaps = 6/220 (2%)

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
           S N++ ++ IL        +  AL L   +   ++      ++++L     + A   G+ 
Sbjct: 22  SDNTNPFSKILQ-LCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQ 80

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCG-QVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
           IH+ VIK GL+    V ++LL +Y K G        +F  L  K++++W +MI+GY R G
Sbjct: 81  IHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVG 140

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407
                +ELF ++     ++P++ T   V+ ACS  ++   K+   F  +    G      
Sbjct: 141 KPMNSLELFWKM-LAYGVEPNAFTLSAVIKACS--ELGDLKLGRIFHGVVLGRGFDSNYV 197

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
              ++I + G+   +  A+++  EL      + W +++SA
Sbjct: 198 IASALIDMHGRNCALDDARQLFDEL-LEPDAICWTSIISA 236


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 172/534 (32%), Positives = 287/534 (53%), Gaps = 47/534 (8%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINS-LADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q+H +++KSG   + FV  +L+  Y K+ +   +  K+F  +    V+SW S+ISGYV+ 
Sbjct: 139 QIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRV 198

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           GK   +L LF ++    +  +A++ ++ + AC +LG L+LG   H  ++    +   VIA
Sbjct: 199 GKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIA 258

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
           + LIDM+G+  +++DA  +F E+++ D I W S+I+A  RN   + A  F + +      
Sbjct: 259 SALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGM 318

Query: 199 -PDTISYNEVINGIAQFGDIE-----------------------------------DAIM 222
            PD  ++  V+      G ++                                   ++  
Sbjct: 319 CPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQR 378

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           I   MP  NS SW+++L GY         + +F +M+  D+    Y F T+L   AGL+A
Sbjct: 379 IFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDL----YCFGTILRTCAGLAA 434

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           +  G  +H   I++G    ++V SAL+D+Y+KCG +E A ++F  +  +NL+TWN+MI G
Sbjct: 435 VRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGG 494

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           +A+NG   + + +F Q+     ++PD ++F+ +L ACSH  +  D+  EYF SMTKDYGI
Sbjct: 495 FAQNGRGEEALRIFNQM-VKEGIKPDYISFIGILFACSHRGL-VDEGREYFISMTKDYGI 552

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
           K  +EH   M+ L+G+ G +  A+ +I    F     +W ALL A   C++ ++A   A 
Sbjct: 553 KVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAK 612

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            V++LE D    YV+L N+Y + G W+ A  +R  M++RG+ K  G SWIE +N
Sbjct: 613 RVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIETKN 666



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 190/407 (46%), Gaps = 43/407 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + L  +++A S+LG     +  H  +L  GF SN  +++AL+  + +  +L DA ++
Sbjct: 218 PNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQL 277

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGS 119
           F E+ +P  + W S+IS   ++  + +AL  F  ++R   +  D ++F + L ACG LG 
Sbjct: 278 FDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGR 337

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+ G  +H+K++       VV+ + L+DMYGKCGSV ++  +F  M  K+ +SW++++  
Sbjct: 338 LKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGG 397

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEV-------------------------------- 207
             +NG+ +       ++   D   +  +                                
Sbjct: 398 YCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVE 457

Query: 208 ---INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
              ++  A+ G IE A  I   MP  N  +WNS++ G+    R  EAL +F +M  + + 
Sbjct: 458 SALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIK 517

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADS 323
            D  +F  +L   +    +  G      + K  G+   I   S ++D+  + G +E A+ 
Sbjct: 518 PDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEI 577

Query: 324 MFR-SLCRKNLVTWNAMITGYARNGDLTKVIELFEQL-KTVRDLQPD 368
           +   S  R +   W A++       +     E+ E++ K V +L+PD
Sbjct: 578 LIETSDFRDDSSLWAALLGACTTCTNY----EIAERIAKRVMELEPD 620



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 160/342 (46%), Gaps = 48/342 (14%)

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           +SG+   AL L   ++  EI A    + S L  C ++ +   G+ IH+ ++K  LE    
Sbjct: 95  KSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRF 154

Query: 141 IANCLIDMYGKCGS-VEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHR 195
           + N L+ +Y K G+   +   VF  +  KD+ISW S+I+   R G    +LEL +  L  
Sbjct: 155 VGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAY 214

Query: 196 LPNPDTISYNEVINGIAQFGD-----------------------------------IEDA 220
              P+  + + VI   ++ GD                                   ++DA
Sbjct: 215 GVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDA 274

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM--DEYTFSTMLSGIA 278
             +   +  P++  W SI++     +   EAL  F  MQ +D  M  D +TF T+L+   
Sbjct: 275 RQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQ-RDHGMCPDGFTFGTVLTACG 333

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            L  L  G  +H+ VI  G   ++VV S+L+DMY KCG V  +  +F  +  KN V+W+A
Sbjct: 334 NLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSA 393

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           ++ GY +NGD   VI++F +++ V     D   F  +L  C+
Sbjct: 394 LLGGYCQNGDFKSVIQIFRKMEKV-----DLYCFGTILRTCA 430



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 5/229 (2%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
           Y    +LR  + L      +++HC  ++ G   +V V +AL+  Y K   +  A  +F +
Sbjct: 420 YCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQ 479

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
           +P  ++++WNS+I G+ Q+G+  +AL +F ++ +  I  D  SF   L AC   G +  G
Sbjct: 480 MPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEG 539

Query: 124 MAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDA-IGVFGEMIDKDIISWNSVIAASA 181
                 + K Y ++ G+   +C++D+ G+ G +E+A I +       D   W +++ A  
Sbjct: 540 REYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACT 599

Query: 182 RNGNLELAFGFLHRLP--NPD-TISYNEVINGIAQFGDIEDAIMILSSM 227
              N E+A     R+    PD  +SY  + N     G   DA+ I   M
Sbjct: 600 TCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLM 648



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 103/220 (46%), Gaps = 6/220 (2%)

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
           S N++ ++ IL        +  AL L   +   ++      ++++L     + A   G+ 
Sbjct: 81  SDNTNPFSKILQ-LCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQ 139

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCG-QVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
           IH+ VIK GL+    V ++LL +Y K G        +F  L  K++++W +MI+GY R G
Sbjct: 140 IHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVG 199

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407
                +ELF ++     ++P++ T   V+ ACS  ++   K+   F  +    G      
Sbjct: 200 KPMNSLELFWKM-LAYGVEPNAFTLSAVIKACS--ELGDLKLGRIFHGVVLGRGFDSNYV 256

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
              ++I + G+   +  A+++  EL      + W +++SA
Sbjct: 257 IASALIDMHGRNCALDDARQLFDEL-LEPDAICWTSIISA 295


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 167/533 (31%), Positives = 297/533 (55%), Gaps = 41/533 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H  ++ +GF SN+F  TA++  Y K   + DA+KMF  +PQ  +VSWN++++GY Q+
Sbjct: 162 REIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQN 221

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G  R+A+ + ++++ +    D+ +  S L A   L +L++G +IH    +   E  V +A
Sbjct: 222 GFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVA 281

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG-FLHRLP---N 198
             ++D Y KCGSV  A  VF  M  ++++SWN++I   A+NG  E AF  FL  L     
Sbjct: 282 TAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVE 341

Query: 199 PDTISYNEVINGIAQFGDIEDA---------------IMILSSMPSPNSS---------- 233
           P  +S    ++  A  GD+E                 + +++S+ S  S           
Sbjct: 342 PTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASV 401

Query: 234 ----------SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
                     +WN+++ GY     V EAL+LF EMQS D+  D +T  ++++ +A LS  
Sbjct: 402 FGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVT 461

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
                IH   I+  +D ++ V +AL+D ++KCG ++ A  +F  +  ++++TWNAMI GY
Sbjct: 462 RQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGY 521

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
             NG   + ++LF +++    ++P+ +TFL+V+AACSH+ +  ++   YFESM ++YG++
Sbjct: 522 GTNGHGREALDLFNEMQN-GSVKPNEITFLSVIAACSHSGL-VEEGMYYFESMKENYGLE 579

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           PT++H  +M+ L+G+ G +  A + I+++       V  A+L A     ++++   +A E
Sbjct: 580 PTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADE 639

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +  L+ D    +V+L N+Y S   WD  + +R  M ++G++K  GCS +E+ N
Sbjct: 640 LFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRN 692



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/467 (24%), Positives = 219/467 (46%), Gaps = 43/467 (9%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            Q+   I+K+GF +     T L+  + K NS+ +A ++F  +     V +++++ GY ++
Sbjct: 61  HQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKN 120

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
              R A+  +  +   E+    Y FT  L   G+   L+ G  IH  ++    +  +   
Sbjct: 121 STLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAM 180

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PN 198
             ++++Y KC  +EDA  +F  M  +D++SWN+V+A  A+NG    A   + ++      
Sbjct: 181 TAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQK 240

Query: 199 PDTISYNEVINGIAQF-----------------------------------GDIEDAIMI 223
           PD+I+   V+  +A                                     G +  A ++
Sbjct: 241 PDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLV 300

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              M S N  SWN+++ GY       EA   F +M  + V     +    L   A L  L
Sbjct: 301 FKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDL 360

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H  + ++ +   + V ++L+ MYSKC +V+IA S+F +L  K +VTWNAMI GY
Sbjct: 361 ERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGY 420

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A+NG + + + LF ++++  D++PDS T ++V+ A +  D+   + +++   +     + 
Sbjct: 421 AQNGCVNEALNLFCEMQS-HDIKPDSFTLVSVITALA--DLSVTRQAKWIHGLAIRTLMD 477

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450
             V  C ++I    + G +  A+++  +L    + + W A++   G 
Sbjct: 478 KNVFVCTALIDTHAKCGAIQTARKLF-DLMQERHVITWNAMIDGYGT 523



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 120/459 (26%), Positives = 208/459 (45%), Gaps = 47/459 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L A +DL      + +H Y  ++GF   V V+TA++  Y K  S+  A  +
Sbjct: 241 PDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLV 300

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   +VVSWN++I GY Q+G+  +A   F+++    +     S   AL AC  LG L
Sbjct: 301 FKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDL 360

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H  + +  +   V + N LI MY KC  V+ A  VFG +  K +++WN++I   
Sbjct: 361 ERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGY 420

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQF---------------------- 214
           A+NG +  A      + +    PD+ +   VI  +A                        
Sbjct: 421 AQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNV 480

Query: 215 -------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                        G I+ A  +   M   +  +WN+++ GY       EAL LF EMQ+ 
Sbjct: 481 FVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNG 540

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEI 320
            V  +E TF ++++  +    +  GM     + +  GL+ ++    A++D+  + G+++ 
Sbjct: 541 SVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDD 600

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL-KTVRDLQPDSVTFLNVLAAC 379
           A    + +  K  +T    + G  R   + K +EL E+    + DL PD   +  +LA  
Sbjct: 601 AWKFIQDMPVKPGITVLGAMLGACR---IHKNVELGEKTADELFDLDPDDGGYHVLLANM 657

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
             +   +DKV+    +M K  GI+ T    CS++ L  +
Sbjct: 658 YASASMWDKVARVRTAMEKK-GIQKTP--GCSLVELRNE 693


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 185/555 (33%), Positives = 294/555 (52%), Gaps = 44/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    +L+A S LG   Y + +H +++KSGF  +V V ++ +G Y K N   DA K+
Sbjct: 104 PDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKL 163

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+  V SWN++IS Y Q G+  KAL LF E++ S    D+ + T+ +++C +L  L
Sbjct: 164 FDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDL 223

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA-- 178
           + G  IH ++V+        +++ L+DMYGKCG +E A  VF ++  K+++SWNS+IA  
Sbjct: 224 ERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGY 283

Query: 179 ---------------------------------ASARNGNLELAFGFLH-----RLPNPD 200
                                            A +R+ NL+L   F+H          D
Sbjct: 284 SLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLG-KFIHGYIIRNRVEAD 342

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               + +I+   + G+I  A  +  +MP  N  SWN +++GYV      EAL +F +M+ 
Sbjct: 343 IFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRK 402

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             V  D  TF+++L   + L+ L  G  IH+ +I+  L+ + VV  ALLDMY+KCG V+ 
Sbjct: 403 AGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDE 462

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  L  ++ V+W +MI  Y  +G   + ++LFE+++   D +PD VTFL +L+ACS
Sbjct: 463 ALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQ-SDAKPDKVTFLAILSACS 521

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV- 439
           H  +  D+   YF  M  +YG KP VEH   +I L+G+ G +  A  +++        V 
Sbjct: 522 HAGL-VDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVG 580

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +   L SA      LD+       +I+ + D    Y++L N+Y S   WD    +R  ++
Sbjct: 581 LLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIK 640

Query: 500 ERGLRKEAGCSWIEV 514
           E GL+K  GCSWIEV
Sbjct: 641 ELGLKKNPGCSWIEV 655



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 146/321 (45%), Gaps = 42/321 (13%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
           D     S L  C     L+ G  IH KIV   L+  + +   LI++Y  C   + A  VF
Sbjct: 2   DTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVF 61

Query: 163 GEMIDK-DIISWNSVIAASARNGNLELAFGFLHRLPN-----PDTISYNEVINGIAQFGD 216
             + +  DI  WN ++AA  +N          HRL +     PD  +Y  V+   +  G 
Sbjct: 62  QTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGR 121

Query: 217 I-----------------------------------EDAIMILSSMPSPNSSSWNSILTG 241
           +                                   EDAI +   MP  + +SWN++++ 
Sbjct: 122 VGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISC 181

Query: 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
           Y    +  +AL LF EM+      D  T +T++S  A L  L  G  IH  +++ G    
Sbjct: 182 YYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALD 241

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
             V+SAL+DMY KCG +E+A  +F  + RKN+V+WN+MI GY+  GD    IELF ++  
Sbjct: 242 GFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDE 301

Query: 362 VRDLQPDSVTFLNVLAACSHT 382
              ++P   T  ++L ACS +
Sbjct: 302 -EGIRPTLTTLSSILMACSRS 321


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 168/485 (34%), Positives = 275/485 (56%), Gaps = 8/485 (1%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           ++F   AL+  Y K  S+ +    F  +P    VS+N+ I+G+  +   +++L LF  ++
Sbjct: 88  DIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQ 147

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           R       Y+  S L A  QL  L+ G  IH  I+  +    V I N L DMY KCG +E
Sbjct: 148 REGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIE 207

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIA 212
            A  +F  +  K+++SWN +I+  A+NG  E   G LH++      PD ++ + +I    
Sbjct: 208 QARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYC 267

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
           Q G +++A  + S     +   W +++ GY    R  +AL LF EM  + +  D YT S+
Sbjct: 268 QCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSS 327

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332
           ++S  A L++L  G  +H   I  GL+ +++V+SAL+DMYSKCG ++ A S+F  +  +N
Sbjct: 328 VVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRN 387

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           +V+WNAMI G A+NG     +ELFE +   +  +PD+VTF+ +L+AC H +   ++  EY
Sbjct: 388 VVSWNAMIVGCAQNGHDKDALELFENM-LQQKFKPDNVTFIGILSACLHCNW-IEQGQEY 445

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
           F+S+T  +G+ PT++H   M+ L+G+ G + +A  +I+ +      ++W  LLS      
Sbjct: 446 FDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKG 505

Query: 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW-DVASVMRNFMRERGLRKEAGCSW 511
           D+  A ++A  + +L+      Y+ML N+Y S G W DVASV RN M+ + ++K AG SW
Sbjct: 506 DIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASV-RNLMKSKNVKKFAGFSW 564

Query: 512 IEVEN 516
           IE++N
Sbjct: 565 IEIDN 569



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 154/315 (48%), Gaps = 36/315 (11%)

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE-RGVVIA 142
           K +  L   V+L  S   A + ++T  +  C +   +     + S +  +  +     + 
Sbjct: 2   KAKSMLRQSVDLLCSRSTATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLH 61

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
           N L+ +Y K G + DA  +F +M+ +DI SWN++++A A++G+++       R+P  D++
Sbjct: 62  NQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSV 121

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
           SYN  I G +            +S P                     E+L LF  MQ + 
Sbjct: 122 SYNTTIAGFSG-----------NSCPQ--------------------ESLELFKRMQREG 150

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
               EYT  ++L+  A LS L +G  IH  +I +    ++ + +AL DMY+KCG++E A 
Sbjct: 151 FEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQAR 210

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA---C 379
            +F  L +KNLV+WN MI+GYA+NG   K I L  Q++    + PD VT   ++AA   C
Sbjct: 211 WLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHM-PDQVTMSTIIAAYCQC 269

Query: 380 SHTDIPFDKVSEYFE 394
              D      SE+ E
Sbjct: 270 GRVDEARRVFSEFKE 284



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 176/360 (48%), Gaps = 16/360 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P EY +  +L AS+ L    Y +Q+H  I+   FL NVF+  AL   Y K   +  A  +
Sbjct: 153 PTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWL 212

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + + ++VSWN +ISGY ++G+  K + L  ++  S    D  + ++ +AA  Q G +
Sbjct: 213 FDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRV 272

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM----IDKDIISWNSV 176
                + S+      E+ +V    ++  Y K G  EDA+ +F EM    I+ D  + +SV
Sbjct: 273 DEARRVFSEFK----EKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSV 328

Query: 177 IAASAR-----NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
           +++ A+     +G        L  L N   +S + +I+  ++ G I+DA  + + MP+ N
Sbjct: 329 VSSCAKLASLHHGQAVHGKSILAGLNNNLLVS-SALIDMYSKCGFIDDARSVFNLMPTRN 387

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SWN+++ G        +AL LF  M  +    D  TF  +LS     + +  G     
Sbjct: 388 VVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFD 447

Query: 292 CVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSLCR-KNLVTWNAMITGYARNGDL 349
            +  Q G+  ++   + ++++  + G++E A ++ +++    + + W+ +++  +  GD+
Sbjct: 448 SITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDI 507



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 153/300 (51%), Gaps = 23/300 (7%)

Query: 32  SGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNL 91
           SG + +    + ++  Y +   + +A ++F E  +  +V W +++ GY ++G+   AL L
Sbjct: 250 SGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLL 309

Query: 92  FVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGK 151
           F E+    I  D+Y+ +S +++C +L SL  G A+H K +   L   +++++ LIDMY K
Sbjct: 310 FNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSK 369

Query: 152 CGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPNPDTISYNEV 207
           CG ++DA  VF  M  ++++SWN++I   A+NG+    LEL    L +   PD +++  +
Sbjct: 370 CGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGI 429

Query: 208 I------NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           +      N I Q  +  D+I     M +P    +  ++       R+ +A+ L   M   
Sbjct: 430 LSACLHCNWIEQGQEYFDSITNQHGM-TPTLDHYACMVNLLGRTGRIEQAVALIKNMAHD 488

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG---LDASIVVASALL-DMYSKCGQ 317
               D   +ST+LS  +     T G ++++ V  +    LD +I V   +L +MY+  G+
Sbjct: 489 P---DFLIWSTLLSICS-----TKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGR 540


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 164/484 (33%), Positives = 280/484 (57%), Gaps = 8/484 (1%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           +V+    L+  Y K+  + + H +F ++P    VS+N+LI+ +  +G   KAL + V ++
Sbjct: 88  DVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQ 147

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
                   YS  +AL AC QL  L+ G  IH +IV   L     + N + DMY KCG ++
Sbjct: 148 EDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDID 207

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIA 212
            A  +F  MIDK+++SWN +I+   + GN        + +      PD ++ + V+N   
Sbjct: 208 KARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYF 267

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
           + G ++DA  +   +P  +   W +++ GY    R  +A  LFG+M  ++V  D YT S+
Sbjct: 268 RCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISS 327

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332
           M+S  A L++L  G ++H  V+  G+D S++V+SAL+DMY KCG    A  +F ++  +N
Sbjct: 328 MVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRN 387

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           ++TWNAMI GYA+NG + + + L+E+++   + +PD++TF+ VL+AC + D+   +  +Y
Sbjct: 388 VITWNAMILGYAQNGQVLEALTLYERMQQ-ENFKPDNITFVGVLSACINADM-VKEGQKY 445

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
           F+S++ ++GI PT++H   MI L+G+ G V +A  +I+ +       +W  LLS   A  
Sbjct: 446 FDSIS-EHGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLSVC-AKG 503

Query: 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           DL  A ++A+ + +L+  +   Y+ML NLY + G W   +V+R+ M+E+  +K A  SW+
Sbjct: 504 DLKNAELAASHLFELDPRNAGPYIMLSNLYAACGRWKDVAVVRSLMKEKNAKKFAAYSWV 563

Query: 513 EVEN 516
           EV N
Sbjct: 564 EVGN 567



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 138/309 (44%), Gaps = 46/309 (14%)

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE------R 137
           K ++ L+  ++L  S   A    +T  +  C +         I +K ++  +E      +
Sbjct: 2   KVKQKLHQAIDLLYSHGLASFDDYTRLVLHCARANDF-----IQAKRLQSHMELNLFQPK 56

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
              I N L+ +Y K G + DA  VF  M  +D+ SWN++++A A+ G +E       ++P
Sbjct: 57  DSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMP 116

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
             D++SYN +I   A  G    A+ +L                                 
Sbjct: 117 YRDSVSYNTLIACFASNGHSGKALKVLV-------------------------------R 145

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           MQ       +Y+    L   + L  L  G  IH  ++   L  +  V +A+ DMY+KCG 
Sbjct: 146 MQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGD 205

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           ++ A  +F  +  KN+V+WN MI+GY + G+  + I LF +++ +  L+PD VT  NVL 
Sbjct: 206 IDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQ-LSGLKPDLVTVSNVLN 264

Query: 378 A---CSHTD 383
           A   C   D
Sbjct: 265 AYFRCGRVD 273



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 129/265 (48%), Gaps = 40/265 (15%)

Query: 16  LGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSL 75
           +G    C  L   +  SG   ++   + ++  Y +   + DA  +F+++P+   + W ++
Sbjct: 234 MGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTM 293

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135
           I GY Q+G+   A  LF ++ R  +  D+Y+ +S +++C +L SL  G  +H K+V   +
Sbjct: 294 IVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGI 353

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
           +  +++++ L+DMY KCG   DA  +F  M  +++I+WN++I   A+NG +  A     R
Sbjct: 354 DNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYER 413

Query: 196 LPN----PDTISYNEVI---------------------NGIA--------------QFGD 216
           +      PD I++  V+                     +GIA              + G 
Sbjct: 414 MQQENFKPDNITFVGVLSACINADMVKEGQKYFDSISEHGIAPTLDHYACMITLLGRSGS 473

Query: 217 IEDAIMILSSMP-SPNSSSWNSILT 240
           ++ A+ ++  MP  PN   W+++L+
Sbjct: 474 VDKAVDLIQGMPHEPNYRIWSTLLS 498



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 176/423 (41%), Gaps = 83/423 (19%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P +Y   + L+A S L    + +Q+H  I+ +    N FV  A+   Y K   +  A  +
Sbjct: 153 PTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLL 212

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   +VVSWN +ISGYV+ G   + ++LF E++ S +  D  + ++ L A       
Sbjct: 213 FDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNA------- 265

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
                                       Y +CG V+DA  +F ++  KD I W ++I   
Sbjct: 266 ----------------------------YFRCGRVDDARNLFIKLPKKDEICWTTMIVGY 297

Query: 181 ARNGNLELA---FG-FLHRLPNPDTISYNEVINGIAQFGDIE------------------ 218
           A+NG  E A   FG  L R   PD+ + + +++  A+   +                   
Sbjct: 298 AQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSM 357

Query: 219 -----------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                            DA +I  +MP  N  +WN+++ GY    +V EAL L+  MQ +
Sbjct: 358 LVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQE 417

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           +   D  TF  +LS       +  G      + + G+  ++   + ++ +  + G V+ A
Sbjct: 418 NFKPDNITFVGVLSACINADMVKEGQKYFDSISEHGIAPTLDHYACMITLLGRSGSVDKA 477

Query: 322 DSMFRSLCRK-NLVTWNAMITGYARNGDLTK----VIELFEQLKTVRDLQPDSVTFLNVL 376
             + + +  + N   W+ +++  A+ GDL         LFE     R+  P  +   N+ 
Sbjct: 478 VDLIQGMPHEPNYRIWSTLLSVCAK-GDLKNAELAASHLFEL--DPRNAGP-YIMLSNLY 533

Query: 377 AAC 379
           AAC
Sbjct: 534 AAC 536



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 130/270 (48%), Gaps = 12/270 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y +  ++ + + L    + Q +H  ++  G  +++ VS+AL+  Y K     DA  +
Sbjct: 320 PDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVI 379

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P  +V++WN++I GY Q+G+  +AL L+  +++     D  +F   L+AC     +
Sbjct: 380 FETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMV 439

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI-DKDIISWNSVIAA 179
           + G      I ++ +   +    C+I + G+ GSV+ A+ +   M  + +   W+++++ 
Sbjct: 440 KEGQKYFDSISEHGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLSV 499

Query: 180 SARNG--NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS---- 233
            A+    N ELA   L  L   +   Y  + N  A  G  +D  ++ S M   N+     
Sbjct: 500 CAKGDLKNAELAASHLFELDPRNAGPYIMLSNLYAACGRWKDVAVVRSLMKEKNAKKFAA 559

Query: 234 -SWNSI---LTGYVNRNRV-PEALHLFGEM 258
            SW  +   +  +V+ +   PE   ++GE+
Sbjct: 560 YSWVEVGNKVHRFVSEDHYHPEVGKIYGEL 589


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 181/554 (32%), Positives = 291/554 (52%), Gaps = 42/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A   L      Q +H  ++K G + ++ V ++L+G Y K N    A K+
Sbjct: 104 PDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKL 163

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P   V  WN++IS Y QSGK+ +AL  F  + R     D+ + T+A+++C +L  L
Sbjct: 164 FDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDL 223

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH ++V         ++  L+DMYGKCG +E AI VF +M +K +++WNS+I   
Sbjct: 224 DRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGY 283

Query: 181 ARNGN------------------------------------LELAF--GFLHR-LPNPDT 201
              G+                                    LE  F  G++ R    PD 
Sbjct: 284 GFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDI 343

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              + +++   + G +E A  I   MP   + SWN +++GYV   ++ +AL LFGEM   
Sbjct: 344 FLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKS 403

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  D  TF+++L+  + L+AL  G  IH+ ++++ L  + VV  ALLDMY+KCG VE A
Sbjct: 404 FVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEA 463

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F+ L  ++LV+W +MIT Y  +G + + +ELF ++    +++PD VTFL +L+ACSH
Sbjct: 464 FGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFAEMLQ-SNVKPDRVTFLAILSACSH 522

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR-ELGFGSYGVV 440
             +  D +  +F  M   YGI P +EH   +I L+G+ G +  A  +++          +
Sbjct: 523 AGLVDDGLY-HFNQMINVYGIIPRIEHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQL 581

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
              L SA     +LD+    A  +I  + D    Y++L N+Y S G WD   ++R+ M++
Sbjct: 582 LSTLFSACRLHKNLDLGVEIAENLIDKDPDDSSTYIILSNMYASFGKWDEVRMVRSKMKD 641

Query: 501 RGLRKEAGCSWIEV 514
            GL+K  GCSWIE+
Sbjct: 642 LGLKKNPGCSWIEI 655



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 38/263 (14%)

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
           MD      +L       +L  G ++H  V+  GL   + V   L+ +Y  C   + A ++
Sbjct: 1   MDARKLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNV 60

Query: 325 FRSLCRKNLVTW-NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS--- 380
           F  +     ++  N ++ GY RN    + + LF++L     L+PDS T+ +VL AC    
Sbjct: 61  FDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLR 120

Query: 381 --------HT---------DIP--------FDKVSEYFESMTKDYGIKPTVEHCC--SMI 413
                   HT         DI         + K +E FE   K +   P  +  C  ++I
Sbjct: 121 RVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNE-FECAVKLFDEMPDKDVACWNTVI 179

Query: 414 RLMGQKGEVWRAQR---MIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK--LE 468
               Q G+   A R   M+R  GF    V     +S+     DLD  R    E++     
Sbjct: 180 SCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFR 239

Query: 469 GDSDYVYVMLCNLYTSHGNWDVA 491
            DS +V   L ++Y   G  ++A
Sbjct: 240 MDS-FVSAALVDMYGKCGQLEMA 261


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 170/500 (34%), Positives = 285/500 (57%), Gaps = 24/500 (4%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QLH + LK+ F ++V + TA +  Y K N+L+DA K+F  +P  ++ S+N++I GY +S 
Sbjct: 296 QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSD 355

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           K    L L           D  S + A  AC  +     G+ +H   +K   +  + +AN
Sbjct: 356 K---GLGL-----------DEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVAN 401

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG-FLH------RL 196
            ++DMYGKCG++ +A  VF EM+ +D +SWN++IAA  +NGN E     F+H      RL
Sbjct: 402 AILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRL 461

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
              D+     +I+  ++ G +E A  +   +      SWN+I++G+  + +  EA   F 
Sbjct: 462 -GLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFS 520

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           +M    V  D +T++T+L   A L  +  G  IH+ +IK+ L +   ++S L+DMYSKCG
Sbjct: 521 KMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCG 580

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            ++    +F     ++ VTWNAM+ GYA++G   + +++FE ++ + +++P+  TFL VL
Sbjct: 581 NMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQ-LENVKPNHATFLAVL 639

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
            AC H  +  +K   YF SM  +YG+ P +EH   ++ +MG+ G+V +A  +I  + F +
Sbjct: 640 RACGHMGL-VEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEA 698

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
             V+WR LLS      +++VA  +A  +++LE +    YV+L N+Y + G W+  + +R 
Sbjct: 699 DAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRK 758

Query: 497 FMRERGLRKEAGCSWIEVEN 516
            MR  GL+KE GCSWIE+++
Sbjct: 759 MMRFNGLKKEPGCSWIEIKS 778



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 129/555 (23%), Positives = 232/555 (41%), Gaps = 95/555 (17%)

Query: 8   HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSL------------- 54
           H+ +  SD       +Q H  ++ + F   VFV+  L+  Y K + L             
Sbjct: 47  HIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQR 106

Query: 55  ------------------ADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
                               A K+F  +P+  VVSWNSLISGY+ +G +RK +++F+++ 
Sbjct: 107 DTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMG 166

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           R     D  +F   L +C  L     G+ IH   VK   +  VV  + L+DMY KC  ++
Sbjct: 167 RMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLD 226

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP----------------- 199
            +I  F  M +K+ +SW+++IA   +N +L         +                    
Sbjct: 227 CSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCA 286

Query: 200 ----------------DTISYNEVINGIAQF------GDIEDAIMILSSMPSPNSSSWNS 237
                            T    +V+ G A         ++ DA  + +S+P+ N  S+N+
Sbjct: 287 GLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNA 346

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           I+ GY   +              K + +DE + S      A +     G+ +H   +K  
Sbjct: 347 IIVGYARSD--------------KGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSL 392

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
             ++I VA+A+LDMY KCG +  A  +F  +  ++ V+WNA+I  + +NG+  K + LF 
Sbjct: 393 CQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFI 452

Query: 358 QLKTVRD-LQPDS---VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMI 413
             + ++  L  DS   +  +++ + C       +K  +  + + +   +  +     S  
Sbjct: 453 HNRIIKSRLGLDSFVGIALIDMYSKCGM----MEKAEKLHDRLAEQTVV--SWNAIISGF 506

Query: 414 RLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD- 472
            L  Q  E  +    + E+G       +  +L        +++ +   A++IK E  SD 
Sbjct: 507 SLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDA 566

Query: 473 YVYVMLCNLYTSHGN 487
           Y+   L ++Y+  GN
Sbjct: 567 YISSTLVDMYSKCGN 581



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 131/275 (47%), Gaps = 32/275 (11%)

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
           +F+     C    +L  G   H++++    +  V + NCLI MY KC             
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCS------------ 91

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILS 225
                              +LE AF     +P  DT+S+N ++ G A  GDI  A  +  
Sbjct: 92  -------------------DLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFD 132

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           +MP  +  SWNS+++GY++     + + +F +M       D  TF+ +L   + L     
Sbjct: 133 AMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGG 192

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G+ IH   +K G D  +V  SALLDMY+KC +++ +   F S+  KN V+W+A+I G  +
Sbjct: 193 GIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQ 252

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           N DL   +ELF++++    +     TF +V  +C+
Sbjct: 253 NDDLRGGLELFKEMQKA-GVGVSQSTFASVFRSCA 286



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 158/381 (41%), Gaps = 74/381 (19%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +E  L    RA + +  D    Q+H   +KS   SN+ V+ A++  Y K  +L +A  +F
Sbjct: 361 DEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVF 420

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            E+     VSWN++I+ + Q+G   K L+LF                             
Sbjct: 421 EEMVSRDAVSWNAIIAAHEQNGNEEKTLSLF----------------------------- 451

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
               IH++I+K  L     +   LIDMY KCG +E A  +   + ++ ++SWN++I+  +
Sbjct: 452 ----IHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFS 507

Query: 182 RNGNLELAFGFLHRL----PNPDTISYNEVINGIAQF----------------------- 214
                E A     ++     +PD  +Y  +++  A                         
Sbjct: 508 LQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAY 567

Query: 215 ------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                       G+++D  +I    P+ +  +WN+++ GY       EAL +F  MQ ++
Sbjct: 568 ISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLEN 627

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           V  +  TF  +L     +  +  G+   HS +   GLD  +   S ++D+  + GQV  A
Sbjct: 628 VKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKA 687

Query: 322 DSMFRSL-CRKNLVTWNAMIT 341
             +   +    + V W  +++
Sbjct: 688 LELIEGMPFEADAVIWRTLLS 708



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 117/240 (48%), Gaps = 17/240 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    +L   ++L      +Q+H  I+K    S+ ++S+ L+  Y K  ++ D   +
Sbjct: 529 PDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLI 588

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F + P    V+WN+++ GY Q G   +AL +F  ++   +  +  +F + L ACG +G +
Sbjct: 589 FEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLV 648

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF-GEMIDKDIISWNSVIA 178
           + G+   HS +  Y L+  +   +C++D+ G+ G V  A+ +  G   + D + W ++++
Sbjct: 649 EKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLS 708

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
               +GN+E+A          +  +Y+     I Q    + A  +L S    N+  WN +
Sbjct: 709 ICKIHGNVEVA----------EKAAYS-----ILQLEPEDSAAYVLLSNIYANAGMWNEV 753



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 14/200 (7%)

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
            P  + TFS +    +   AL  G   H+ +I      ++ V + L+ MY KC  +E A 
Sbjct: 38  TPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAF 97

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F  + +++ V+WNAM+ GYA  GD+    +LF+ +      + D V++ ++++   H 
Sbjct: 98  KVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMP-----ERDVVSWNSLISGYLHN 152

Query: 383 DIPFDKVSEYFESMTK-----DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
                KV + F  M +     D      V   CS +   G   ++     +  ++GF   
Sbjct: 153 G-DHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQI---HGLAVKMGFDCD 208

Query: 438 GVVWRALLSASGACSDLDVA 457
            V   ALL     C  LD +
Sbjct: 209 VVTGSALLDMYAKCKKLDCS 228


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 174/561 (31%), Positives = 308/561 (54%), Gaps = 47/561 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL-SNVFVSTALMG-FYRKINSLADAH 58
           PNEY    ++RA S+  +    + ++ +++K+G+L ++V V   L+  F +    L  A+
Sbjct: 144 PNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAY 203

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           K+F ++P+ ++V+W  +I+ + Q G  R A++LF+++E S    D ++++S L+AC +LG
Sbjct: 204 KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 263

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC---GSVEDAIGVFGEMIDKDIISWNS 175
            L LG  +HS++++  L   V +   L+DMY KC   GSV+D+  VF +M + +++SW +
Sbjct: 264 LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 323

Query: 176 VIAASARNGN-----LELAFGFLHRLPNPDTISY-------------------------- 204
           +I A  ++G      +EL    +     P+  S+                          
Sbjct: 324 IITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 383

Query: 205 ---------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
                    N +I+  A+ G +EDA      +   N  S+N+I+ GY    +  EA  LF
Sbjct: 384 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF 443

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
            E+    + +  +TF+++LSG A + A+  G  IH  ++K G  ++  + +AL+ MYS+C
Sbjct: 444 NEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRC 503

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G +E A  +F  +  +N+++W +MITG+A++G  T+ +E+F ++      +P+ +T++ V
Sbjct: 504 GNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLET-GTKPNEITYVAV 562

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L+ACSH  +   +  ++F SM K++GI P +EH   M+ L+G+ G +  A   I  +   
Sbjct: 563 LSACSHVGM-ISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLM 621

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
           +  +VWR LL A     + ++ R +A  +++ E D    Y++L NL+ S G W     +R
Sbjct: 622 ADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIR 681

Query: 496 NFMRERGLRKEAGCSWIEVEN 516
             M+ER L KEAGCSWIEVEN
Sbjct: 682 KSMKERNLIKEAGCSWIEVEN 702



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 163/350 (46%), Gaps = 47/350 (13%)

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+   A +    + +     D  +++  L +C +  + QLG  +H K+++  LE   V+ 
Sbjct: 23  GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 82

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIAASARNG-----------NLELAF 190
           N LI +Y KCG  E A  +F  M +K D++SW+++++  A N             LEL F
Sbjct: 83  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 142

Query: 191 --------GFLHRLPNPDTISYNEVING----------------------IAQFGDIEDA 220
                     +    N +     E+I G                      +   GD+  A
Sbjct: 143 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSA 202

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             +   MP  N  +W  ++T +       +A+ LF +M+      D +T+S++LS    L
Sbjct: 203 YKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTEL 262

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC---GQVEIADSMFRSLCRKNLVTWN 337
             L  G  +HS VI+ GL   + V  +L+DMY+KC   G V+ +  +F  +   N+++W 
Sbjct: 263 GLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWT 322

Query: 338 AMITGYARNGDLTK-VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
           A+IT Y ++G+  K  IELF ++ +   ++P+  +F +VL AC +   P+
Sbjct: 323 AIITAYVQSGECDKEAIELFCKMISGH-IRPNHFSFSSVLKACGNLSDPY 371



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 113/485 (23%), Positives = 211/485 (43%), Gaps = 74/485 (15%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEI-PQPSVVSWNSLISGYVQSG 83
           +H  +++SG   +  V   L+  Y K      A  +F  +  +  +VSW++++S +  + 
Sbjct: 66  VHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNS 125

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS-LERGVVIA 142
              +A+  F+++     Y + Y F + + AC       +G  I+  +VK   LE  V + 
Sbjct: 126 MEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVG 185

Query: 143 NCLIDMYGK-CGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----------NLELAFG 191
             LIDM+ K  G +  A  VF +M ++++++W  +I   A+ G          ++EL+ G
Sbjct: 186 CELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELS-G 244

Query: 192 FLHRLPNPDTISYNEVINGIAQF------------------------------------- 214
           ++     PD  +Y+ V++   +                                      
Sbjct: 245 YV-----PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAA 299

Query: 215 -GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV-PEALHLFGEMQSKDVPMDEYTFST 272
            G ++D+  +   MP  N  SW +I+T YV       EA+ LF +M S  +  + ++FS+
Sbjct: 300 DGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSS 359

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332
           +L     LS    G  ++S  +K G+ +   V ++L+ MY++ G++E A   F  L  KN
Sbjct: 360 VLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKN 419

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           LV++NA++ GYA+N    +   LF ++     +   + TF ++L+  +   I      E 
Sbjct: 420 LVSYNAIVDGYAKNLKSEEAFLLFNEIADT-GIGISAFTFASLLSGAA--SIGAMGKGEQ 476

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-------------GFGSYGV 439
                   G K     C ++I +  + G +  A ++  E+             GF  +G 
Sbjct: 477 IHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGF 536

Query: 440 VWRAL 444
             RAL
Sbjct: 537 ATRAL 541



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 147/298 (49%), Gaps = 21/298 (7%)

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRLP-----NPDTISYNEVINGIAQFGDIEDAIMI 223
           D+ +++ ++ +  R  N +L    +HR         D++  N +I+  ++ GD E A +I
Sbjct: 43  DLTTYSILLKSCIRFRNFQLG-KLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 101

Query: 224 LSSMPSPNS-SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
              M +     SW+++++ + N +   +A+  F +M       +EY F+ ++   +  + 
Sbjct: 102 FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 161

Query: 283 LTWGMLIHSCVIKQG-LDASIVVASALLDMYSK-CGQVEIADSMFRSLCRKNLVTWNAMI 340
              G +I+  V+K G L+A + V   L+DM+ K  G +  A  +F  +  +NLVTW  MI
Sbjct: 162 AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI 221

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           T +A+ G     I+LF  ++ +    PD  T+ +VL+AC  T++    + +   S     
Sbjct: 222 TRFAQLGCARDAIDLFLDME-LSGYVPDRFTYSSVLSAC--TELGLLALGKQLHSRVIRL 278

Query: 401 GIKPTVEHCCSMIRLMGQ---KGEVWRAQRMIRELGFGSYGVV-WRALLSA---SGAC 451
           G+   V   CS++ +  +    G V  ++++  ++    + V+ W A+++A   SG C
Sbjct: 279 GLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM--PEHNVMSWTAIITAYVQSGEC 334



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 2/159 (1%)

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           S+ +PN     + L   ++  R+  A      M  ++ P D  T+S +L           
Sbjct: 3   SLKNPNFEPLKNRLIRQLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQL 62

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC-RKNLVTWNAMITGYA 344
           G L+H  +++ GL+   VV + L+ +YSKCG  E A  +F  +  +++LV+W+AM++ +A
Sbjct: 63  GKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFA 122

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
            N    + I  F  +  +    P+   F  V+ ACS+ +
Sbjct: 123 NNSMEWQAIWTFLDMLEL-GFYPNEYCFAAVIRACSNAN 160


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 181/554 (32%), Positives = 291/554 (52%), Gaps = 44/554 (7%)

Query: 2    NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
            N Y    +L+  + LG    C+++H  + K GF S   V  +L+  Y K   +  AHK+F
Sbjct: 552  NSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLF 611

Query: 62   VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             E+    VVSWNS+ISG V +G    AL  FV++    +  D  +  +++AAC  +GSL 
Sbjct: 612  DELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLS 671

Query: 122  LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            LG A+H + VK    R V+  N L+DMY KCG++ DAI  F +M  K ++SW S+IAA  
Sbjct: 672  LGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYV 731

Query: 182  RNGNLELAFGFLHRLP----NPDTISYNEVINGI-------------------------- 211
            R G  + A    + +     +PD  S   V++                            
Sbjct: 732  REGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLP 791

Query: 212  ---------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP-EALHLFGEMQSK 261
                     A+ G +E+A ++ S +P  +  SWN+++ GY ++N +P EAL LF EMQ +
Sbjct: 792  VSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGY-SKNSLPNEALKLFAEMQKE 850

Query: 262  DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
              P D  T + +L     L+AL  G  IH C+++ G  + + VA+AL+DMY KCG +  A
Sbjct: 851  SRP-DGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHA 909

Query: 322  DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              +F  +  K+L+TW  MI+G   +G   + I  F++++ +  ++PD +TF ++L ACSH
Sbjct: 910  RLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMR-IAGIKPDEITFTSILYACSH 968

Query: 382  TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
            + +  ++   +F SM  +  ++P +EH   M+ L+ + G + +A  +I  +       +W
Sbjct: 969  SGL-LNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIW 1027

Query: 442  RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
             ALL       D+++A   A  V +LE D+   YV+L N+Y     W+    +R  + +R
Sbjct: 1028 GALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKR 1087

Query: 502  GLRKEAGCSWIEVE 515
            GL+K  GCSWIEV+
Sbjct: 1088 GLKKSPGCSWIEVQ 1101



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 189/397 (47%), Gaps = 42/397 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEI-PQPSVVSWNSLISGYVQ 81
           + +H  I  +G      +   L+  Y    +L +  ++F  I     V  WN ++S Y +
Sbjct: 471 KMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAK 530

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
            G YR+++ LF ++++  I  ++Y+F+  L     LG +     IH  + K        +
Sbjct: 531 IGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTV 590

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----- 196
            N LI  Y K G V+ A  +F E+ D+D++SWNS+I+    NG    A  F  ++     
Sbjct: 591 VNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRV 650

Query: 197 --------------PNPDTISYNEVING--------------------IAQFGDIEDAIM 222
                          N  ++S    ++G                     ++ G++ DAI 
Sbjct: 651 GVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQ 710

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
               M      SW S++  YV      +A+ LF EM+SK V  D Y+ +++L   A  ++
Sbjct: 711 AFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNS 770

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G  +H+ + K  +   + V++AL+DMY+KCG +E A  +F  +  K++V+WN MI G
Sbjct: 771 LDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGG 830

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           Y++N    + ++LF +++  ++ +PD +T   +L AC
Sbjct: 831 YSKNSLPNEALKLFAEMQ--KESRPDGITMACLLPAC 865



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 164/367 (44%), Gaps = 50/367 (13%)

Query: 61  FVEIPQPSV-------VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
           ++++P+ S        +  N+ I  + + G  R A+ L    ++SE+  +AYS  S L  
Sbjct: 403 YLDVPRSSTRVGAFAKLDENTKICKFCEVGDLRNAVELLRMSQKSELDLNAYS--SILQL 460

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI-DKDIIS 172
           C +   LQ G  +HS I    +    V+   L+ MY  CG++ +   +F  ++ D  +  
Sbjct: 461 CAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFL 520

Query: 173 WNSVIAASARNGNLELA-------------------------FGFLHRLPNPDTI----- 202
           WN +++  A+ G+   +                         F  L R+     I     
Sbjct: 521 WNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVY 580

Query: 203 -----SYNEVING-IAQF---GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
                SYN V+N  IA +   G+++ A  +   +   +  SWNS+++G V       AL 
Sbjct: 581 KLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALE 640

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
            F +M    V +D  T    ++  A + +L+ G  +H   +K      ++  + LLDMYS
Sbjct: 641 FFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYS 700

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           KCG +  A   F  + +K +V+W ++I  Y R G     I LF ++++ + + PD  +  
Sbjct: 701 KCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMES-KGVSPDVYSMT 759

Query: 374 NVLAACS 380
           +VL AC+
Sbjct: 760 SVLHACA 766



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 80/147 (54%), Gaps = 1/147 (0%)

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
           WN +++ Y       E+++LF +MQ   +  + YTFS +L   A L  +     IH CV 
Sbjct: 521 WNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVY 580

Query: 295 KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
           K G  +   V ++L+  Y K G+V+ A  +F  L  +++V+WN+MI+G   NG     +E
Sbjct: 581 KLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALE 640

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACSH 381
            F Q+  +R +  D  T +N +AAC++
Sbjct: 641 FFVQMLILR-VGVDLATLVNSVAACAN 666



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 2/191 (1%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
            P+   +  LL A   L      + +H  IL++G+ S + V+ AL+  Y K  SL  A  +
Sbjct: 853  PDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLL 912

Query: 61   FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            F  IP+  +++W  +ISG    G   +A+  F ++  + I  D  +FTS L AC   G L
Sbjct: 913  FDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLL 972

Query: 121  QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
              G    +S I + ++E  +    C++D+  + G++  A  +   M I  D   W +++ 
Sbjct: 973  NEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLC 1032

Query: 179  ASARNGNLELA 189
                + ++ELA
Sbjct: 1033 GCRIHHDVELA 1043


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 174/561 (31%), Positives = 308/561 (54%), Gaps = 47/561 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL-SNVFVSTALMG-FYRKINSLADAH 58
           PNEY    ++RA S+  +    + ++ +++K+G+L ++V V   L+  F +    L  A+
Sbjct: 126 PNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAY 185

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           K+F ++P+ ++V+W  +I+ + Q G  R A++LF+++E S    D ++++S L+AC +LG
Sbjct: 186 KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 245

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC---GSVEDAIGVFGEMIDKDIISWNS 175
            L LG  +HS++++  L   V +   L+DMY KC   GSV+D+  VF +M + +++SW +
Sbjct: 246 LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 305

Query: 176 VIAASARNGN-----LELAFGFLHRLPNPDTISY-------------------------- 204
           +I A  ++G      +EL    +     P+  S+                          
Sbjct: 306 IITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 365

Query: 205 ---------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
                    N +I+  A+ G +EDA      +   N  S+N+I+ GY    +  EA  LF
Sbjct: 366 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF 425

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
            E+    + +  +TF+++LSG A + A+  G  IH  ++K G  ++  + +AL+ MYS+C
Sbjct: 426 NEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRC 485

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G +E A  +F  +  +N+++W +MITG+A++G  T+ +E+F ++      +P+ +T++ V
Sbjct: 486 GNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLET-GTKPNEITYVAV 544

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L+ACSH  +   +  ++F SM K++GI P +EH   M+ L+G+ G +  A   I  +   
Sbjct: 545 LSACSHVGM-ISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLM 603

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
           +  +VWR LL A     + ++ R +A  +++ E D    Y++L NL+ S G W     +R
Sbjct: 604 ADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIR 663

Query: 496 NFMRERGLRKEAGCSWIEVEN 516
             M+ER L KEAGCSWIEVEN
Sbjct: 664 KSMKERNLIKEAGCSWIEVEN 684



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 163/350 (46%), Gaps = 47/350 (13%)

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+   A +    + +     D  +++  L +C +  + QLG  +H K+++  LE   V+ 
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 64

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIAASARNG-----------NLELAF 190
           N LI +Y KCG  E A  +F  M +K D++SW+++++  A N             LEL F
Sbjct: 65  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 124

Query: 191 --------GFLHRLPNPDTISYNEVING----------------------IAQFGDIEDA 220
                     +    N +     E+I G                      +   GD+  A
Sbjct: 125 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSA 184

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             +   MP  N  +W  ++T +       +A+ LF +M+      D +T+S++LS    L
Sbjct: 185 YKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTEL 244

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC---GQVEIADSMFRSLCRKNLVTWN 337
             L  G  +HS VI+ GL   + V  +L+DMY+KC   G V+ +  +F  +   N+++W 
Sbjct: 245 GLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWT 304

Query: 338 AMITGYARNGDLTK-VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
           A+IT Y ++G+  K  IELF ++ +   ++P+  +F +VL AC +   P+
Sbjct: 305 AIITAYVQSGECDKEAIELFCKMISGH-IRPNHFSFSSVLKACGNLSDPY 353



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 113/485 (23%), Positives = 211/485 (43%), Gaps = 74/485 (15%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEI-PQPSVVSWNSLISGYVQSG 83
           +H  +++SG   +  V   L+  Y K      A  +F  +  +  +VSW++++S +  + 
Sbjct: 48  VHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNS 107

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS-LERGVVIA 142
              +A+  F+++     Y + Y F + + AC       +G  I+  +VK   LE  V + 
Sbjct: 108 MEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVG 167

Query: 143 NCLIDMYGK-CGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----------NLELAFG 191
             LIDM+ K  G +  A  VF +M ++++++W  +I   A+ G          ++EL+ G
Sbjct: 168 CELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELS-G 226

Query: 192 FLHRLPNPDTISYNEVINGIAQF------------------------------------- 214
           ++     PD  +Y+ V++   +                                      
Sbjct: 227 YV-----PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAA 281

Query: 215 -GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV-PEALHLFGEMQSKDVPMDEYTFST 272
            G ++D+  +   MP  N  SW +I+T YV       EA+ LF +M S  +  + ++FS+
Sbjct: 282 DGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSS 341

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332
           +L     LS    G  ++S  +K G+ +   V ++L+ MY++ G++E A   F  L  KN
Sbjct: 342 VLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKN 401

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           LV++NA++ GYA+N    +   LF ++     +   + TF ++L+  +   I      E 
Sbjct: 402 LVSYNAIVDGYAKNLKSEEAFLLFNEIADT-GIGISAFTFASLLSGAA--SIGAMGKGEQ 458

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-------------GFGSYGV 439
                   G K     C ++I +  + G +  A ++  E+             GF  +G 
Sbjct: 459 IHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGF 518

Query: 440 VWRAL 444
             RAL
Sbjct: 519 ATRAL 523



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 147/298 (49%), Gaps = 21/298 (7%)

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRLP-----NPDTISYNEVINGIAQFGDIEDAIMI 223
           D+ +++ ++ +  R  N +L    +HR         D++  N +I+  ++ GD E A +I
Sbjct: 25  DLTTYSILLKSCIRFRNFQLG-KLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 83

Query: 224 LSSMPSPNS-SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
              M +     SW+++++ + N +   +A+  F +M       +EY F+ ++   +  + 
Sbjct: 84  FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 143

Query: 283 LTWGMLIHSCVIKQG-LDASIVVASALLDMYSK-CGQVEIADSMFRSLCRKNLVTWNAMI 340
              G +I+  V+K G L+A + V   L+DM+ K  G +  A  +F  +  +NLVTW  MI
Sbjct: 144 AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI 203

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           T +A+ G     I+LF  ++ +    PD  T+ +VL+AC  T++    + +   S     
Sbjct: 204 TRFAQLGCARDAIDLFLDME-LSGYVPDRFTYSSVLSAC--TELGLLALGKQLHSRVIRL 260

Query: 401 GIKPTVEHCCSMIRLMGQ---KGEVWRAQRMIRELGFGSYGVV-WRALLSA---SGAC 451
           G+   V   CS++ +  +    G V  ++++  ++    + V+ W A+++A   SG C
Sbjct: 261 GLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM--PEHNVMSWTAIITAYVQSGEC 316


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 177/532 (33%), Positives = 285/532 (53%), Gaps = 41/532 (7%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QLH + LK  F S++ V TA +  Y K  SLADA ++F  +P+ S+  +N++I G V++ 
Sbjct: 298 QLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNE 357

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           K  +AL  F  L +S +  +  S + A +AC  +     G  +HS  VK +L   + +AN
Sbjct: 358 KGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVAN 417

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA---FGFLHRLP-NP 199
            ++DMYGKC ++ +A  +F EM  +D +SWN+VIAA  +NGN E     F  + RL   P
Sbjct: 418 SILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEP 477

Query: 200 DTISYNEVIN-----------------------GIAQF------------GDIEDAIMIL 224
           D  +Y  V+                        G+  F            G IE+A  I 
Sbjct: 478 DQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIH 537

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             +      SWN+I+ G+       +A   F EM    V  D +T++ +L   A L+++ 
Sbjct: 538 DRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVG 597

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  IH  +IK  L + + + S L+DMYSKCG ++ +  +F     K+ VTWNAMI GYA
Sbjct: 598 LGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYA 657

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           ++G   + +  FE+++ + +++P+  TF+++L AC+H     DK   YF +M  +YG++P
Sbjct: 658 QHGLGEEALGYFERMQ-LENVRPNHATFVSILRACAHMGF-IDKGLHYFNAMLTEYGLEP 715

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
            +EH   MI ++G+ G +  A ++I+E+ F +  V+WR LLS      ++++A  +   +
Sbjct: 716 QIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATNAI 775

Query: 465 IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           ++LE +     ++L N+Y   G W   S MR  MR   L+KE GCSWIEV++
Sbjct: 776 LQLEPEDSSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSWIEVKD 827



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 120/444 (27%), Positives = 209/444 (47%), Gaps = 72/444 (16%)

Query: 8   HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRK----------------- 50
           H+++  SD       +Q H  ++ SGF+ +V++S  LM  Y +                 
Sbjct: 48  HIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQR 107

Query: 51  --------INSLADAHKM------FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
                   I+  ADA +M      F + P+  VVSWNS++SG++Q+G+ RK++++F+++ 
Sbjct: 108 DVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMG 167

Query: 97  RSE-IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
           RSE +  D  +F   L AC  L    LG+ +H  IV+    + VV  + L+DMY KC  +
Sbjct: 168 RSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRL 227

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----------------- 198
           +D++ +F E+  K+ + W+++IA   +N    L       +                   
Sbjct: 228 DDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSC 287

Query: 199 ----------------------PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
                                  D       ++  A+ G + DA  I +S+P  +   +N
Sbjct: 288 AGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYN 347

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           +I+ G V   +  EAL  F  +    +  +E + S   S  A +     G  +HS  +K 
Sbjct: 348 AIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKS 407

Query: 297 GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
            L ++I VA+++LDMY KC  +  A  MF  + R++ V+WNA+I  + +NG+  + + LF
Sbjct: 408 TLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLF 467

Query: 357 EQLKTVRDLQPDSVTFLNVLAACS 380
             +  +R ++PD  T+ +VL ACS
Sbjct: 468 ASMLRLR-MEPDQFTYGSVLKACS 490



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 190/402 (47%), Gaps = 50/402 (12%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H  I++ GF  +V   +AL+  Y K   L D+ K+F EIP  + V W+++I+G VQ+ 
Sbjct: 197 QVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQND 256

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           ++   L LF E+++  I      + S   +C  L +L++G  +H+  +K      + +  
Sbjct: 257 EHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGT 316

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN-----------LELAFGF 192
             +DMY KCGS+ DA  +F  +    +  +N++I    RN             L+   GF
Sbjct: 317 ATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGF 376

Query: 193 -----------------------LHRLPNPDTISYNE-VINGIAQ-FGDIE---DAIMIL 224
                                  LH L    T+  N  V N I   +G  E   +A  + 
Sbjct: 377 NEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMF 436

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             M   ++ SWN+++  +       E L+LF  M    +  D++T+ ++L   +   AL 
Sbjct: 437 DEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALN 496

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            GM IH+ +IK GL     V  AL+DMY KCG +E A  +   + ++ +V+WNA+I G+ 
Sbjct: 497 SGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFT 556

Query: 345 RNGDLTKVIE-----LFEQLKTVRDLQPDSVTFLNVLAACSH 381
               L K  E      +E LK    ++PD+ T+  VL AC++
Sbjct: 557 ----LLKHSEDAHSFFYEMLKM--SVKPDNFTYAIVLDACAN 592



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 192/409 (46%), Gaps = 46/409 (11%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE  L     A + +  D   +QLH   +KS   SN+ V+ +++  Y K  +L++A  MF
Sbjct: 377 NEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMF 436

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            E+ +   VSWN++I+ + Q+G   + LNLF  + R  +  D +++ S L AC    +L 
Sbjct: 437 DEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALN 496

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            GM IH++I+K  L     +   LIDMY KCG +E+A  +   +  + ++SWN++IA   
Sbjct: 497 SGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFT 556

Query: 182 RNGNLELAFGFLHRL----PNPDTISYNEVINGIAQF----------------------- 214
              + E A  F + +      PD  +Y  V++  A                         
Sbjct: 557 LLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVY 616

Query: 215 ------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                       G+++D+ ++    P+ +  +WN+++ GY       EAL  F  MQ ++
Sbjct: 617 ITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLEN 676

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIA 321
           V  +  TF ++L   A +  +  G+   + ++ + GL+  I   S ++D+  + G++  A
Sbjct: 677 VRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEA 736

Query: 322 DSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQ-LKTVRDLQPD 368
             + + +    + V W  +++    +G+    IE+ E+    +  L+P+
Sbjct: 737 LKLIQEMPFEADAVIWRTLLSICKIHGN----IEIAEKATNAILQLEPE 781



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 166/356 (46%), Gaps = 42/356 (11%)

Query: 85  YRKALNLF-------VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER 137
           Y K L +F       ++  ++++     +F+  +  C    SL+ G   H++++      
Sbjct: 17  YNKTLRIFTFCTISTLQQNQTKLPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFIP 76

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
            V I+NCL+ MY +C  +  A  VF +M  +D+                           
Sbjct: 77  DVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDV--------------------------- 109

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
               ISYN +I+G A  G++  A       P  +  SWNS+L+G++      +++ +F +
Sbjct: 110 ----ISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLD 165

Query: 258 M-QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           M +S++V  D+ TF+ +L   + L     G+ +H  +++ G    +V  SALLDMY+KC 
Sbjct: 166 MGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCK 225

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           +++ +  +F  +  KN V W+A+I G  +N +    +ELF++++ V      S+ + +V 
Sbjct: 226 RLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSI-YASVF 284

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
            +C+           +  ++  D+G   TV    + + +  + G +  AQR+   L
Sbjct: 285 RSCAGLSALKVGTQLHAHALKCDFGSDITVG--TATLDMYAKCGSLADAQRIFNSL 338



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 104/191 (54%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    +L A ++L      +Q+H  I+K    S+V++++ L+  Y K  ++ D+  +
Sbjct: 578 PDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALV 637

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F + P    V+WN++I GY Q G   +AL  F  ++   +  +  +F S L AC  +G +
Sbjct: 638 FEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFI 697

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G+   ++ + +Y LE  +   +C+ID+ G+ G + +A+ +  EM  + D + W ++++
Sbjct: 698 DKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLS 757

Query: 179 ASARNGNLELA 189
               +GN+E+A
Sbjct: 758 ICKIHGNIEIA 768


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/555 (29%), Positives = 293/555 (52%), Gaps = 41/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL A + +G     +QLH Y++K G  S++ +  +L+  Y K   +  AH+ 
Sbjct: 312 PDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEY 371

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F+     +VV WN ++  Y Q G   ++  +F++++   +  + Y++ S L  C  LG+L
Sbjct: 372 FLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGAL 431

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IH++++K   +  V + + LIDMY K G ++ A G+   + ++D++SW ++IA  
Sbjct: 432 DLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGY 491

Query: 181 ARNGNLELAFGFLHRLPNP----DTISY-------------------------------- 204
            ++     A      + N     D I +                                
Sbjct: 492 TQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDL 551

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +++  A+ G  +DA +    + + ++ SWN++++G+       EAL +F +M   
Sbjct: 552 SIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQA 611

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  + +TF + +S  A  + +  G  IH+ +IK G D+    ++ L+ +YSKCG +E A
Sbjct: 612 GVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDA 671

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F  +  KN+V+WNAMITGY+++G  ++ + LFE++K +  L P+ VTF+ VL+ACSH
Sbjct: 672 KREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQL-GLMPNHVTFVGVLSACSH 730

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  + +S YF SM+K++G+ P  EH   ++ L+G+   +  A+  I E+      ++W
Sbjct: 731 VGLVNEGLS-YFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIW 789

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LLSA     ++++   +A  +++LE +    YV+L N+Y   G WD     R  M++R
Sbjct: 790 RTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDR 849

Query: 502 GLRKEAGCSWIEVEN 516
           G++KE G SWIEV+N
Sbjct: 850 GVKKEPGRSWIEVKN 864



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 128/486 (26%), Positives = 233/486 (47%), Gaps = 43/486 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  YV   +L A + +      +QLH +I+K G  S  FV  AL+  Y +  +L  A ++
Sbjct: 211 PTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQI 270

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ +   +S+NSLISG  Q G   +AL LF +++   +  D  +  S L+AC  +G+ 
Sbjct: 271 FSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAG 330

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +HS ++K  +   ++I   L+D+Y KC  +E A   F     ++++ WN ++ A 
Sbjct: 331 YKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAY 390

Query: 181 ARNGNLELAFG-FLHR-----LPNPDTIS------------------YNEVINGIAQF-- 214
            + GNL  ++  FL       +PN  T                    + +VI    QF  
Sbjct: 391 GQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNV 450

Query: 215 -------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                        G+++ A  IL  +   +  SW +++ GY   +   EAL LF EM+++
Sbjct: 451 YVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQ 510

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D   FS+ +S  AG+ AL  G  IH+     G    + + +AL+ +Y++CG+ + A
Sbjct: 511 GIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDA 570

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F  +  K+ ++WNA+I+G+A++G   + +++F Q+     ++ +  TF + ++A ++
Sbjct: 571 YLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQA-GVEANLFTFGSAVSATAN 629

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           T     K  +   +M    G     E    +I L  + G +  A+R   E+   +  V W
Sbjct: 630 T--ANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNV-VSW 686

Query: 442 RALLSA 447
            A+++ 
Sbjct: 687 NAMITG 692



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 123/450 (27%), Positives = 214/450 (47%), Gaps = 43/450 (9%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           ++LH  I KSGF     + + L+  Y     + +A K+F +IP  +V  WN +ISG +  
Sbjct: 30  KKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAK 89

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAAC-GQLGSLQLGMAIHSKIVKYSLERGVVI 141
               + L LF  +    +  D  +F S L AC G     Q+   IH+KI+ +      ++
Sbjct: 90  KLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLV 149

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE---LAFGFLHR--- 195
            N LID+Y K G V+ A  VF  +  KD +SW ++I+  ++NG  +   L F  +H+   
Sbjct: 150 CNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAV 209

Query: 196 LPNP---------------------------------DTISYNEVINGIAQFGDIEDAIM 222
           +P P                                 +T   N ++   +++G++  A  
Sbjct: 210 IPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQ 269

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           I S M   +  S+NS+++G   R     AL LF +MQ   +  D  T +++LS  A + A
Sbjct: 270 IFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGA 329

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
              G  +HS VIK G+ + +++  +LLD+Y KC  +E A   F +   +N+V WN M+  
Sbjct: 330 GYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVA 389

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           Y + G+L++   +F Q++ +  L P+  T+ ++L  C  T +    + E   +     G 
Sbjct: 390 YGQLGNLSESYWIFLQMQ-IEGLMPNQYTYPSILRTC--TSLGALDLGEQIHTQVIKSGF 446

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
           +  V  C  +I +  + GE+  A+ +++ L
Sbjct: 447 QFNVYVCSVLIDMYAKHGELDTARGILQRL 476



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 208/421 (49%), Gaps = 43/421 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTY--CQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           P+E     +LRA S  G   +   +Q+H  I+  GF S+  V   L+  Y K   +  A 
Sbjct: 109 PDESTFASVLRACSG-GKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAK 167

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
            +F  +     VSW ++ISG  Q+G+  +A+ LF ++ +S +    Y F+S L+AC ++ 
Sbjct: 168 LVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIE 227

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
             +LG  +H  IVK+ L     + N L+ +Y + G++  A  +F +M  +D IS+NS+I+
Sbjct: 228 LFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLIS 287

Query: 179 ASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFG------------------- 215
             A+ G  + A     ++      PD ++   +++  A  G                   
Sbjct: 288 GLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSS 347

Query: 216 ----------------DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                           DIE A     +  + N   WN +L  Y     + E+  +F +MQ
Sbjct: 348 DLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQ 407

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            + +  ++YT+ ++L     L AL  G  IH+ VIK G   ++ V S L+DMY+K G+++
Sbjct: 408 IEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELD 467

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  + + L  +++V+W AMI GY ++    + ++LF++++  + ++ D++ F + ++AC
Sbjct: 468 TARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMEN-QGIRSDNIGFSSAISAC 526

Query: 380 S 380
           +
Sbjct: 527 A 527



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 111/492 (22%), Positives = 208/492 (42%), Gaps = 83/492 (16%)

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           +E   I A+  ++      C   GSL     +H++I K   +   V+ + LID+Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISY------ 204
           V++AI +F ++   ++  WN VI+            G    +      PD  ++      
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 205 ------------------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSS 234
                                         N +I+  ++ G ++ A ++   +   +S S
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS 180

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
           W ++++G     R  EA+ LF +M    V    Y FS++LS    +     G  +H  ++
Sbjct: 181 WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIV 240

Query: 295 KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
           K GL +   V +AL+ +YS+ G +  A+ +F  + R++ +++N++I+G A+ G   + ++
Sbjct: 241 KWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQ 300

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF--DKVSEYFESM---------------- 396
           LFE+++ +  ++PD VT  ++L+AC+     +   ++  Y   M                
Sbjct: 301 LFEKMQ-LDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLY 359

Query: 397 TKDYGIKPTVEHCCS-----------MIRLMGQKGEV----WRAQRMIRELGFGSYGVVW 441
            K + I+   E+  +           M+   GQ G +    W   +M  E G       +
Sbjct: 360 VKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIE-GLMPNQYTY 418

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYV--MLCNLYTSHGNWDVASVMRNFMR 499
            ++L    +   LD+      +VIK  G    VYV  +L ++Y  HG  D A   R  ++
Sbjct: 419 PSILRTCTSLGALDLGEQIHTQVIK-SGFQFNVYVCSVLIDMYAKHGELDTA---RGILQ 474

Query: 500 ERGLRKEAGCSW 511
              LR+E   SW
Sbjct: 475 R--LREEDVVSW 484


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 163/515 (31%), Positives = 272/515 (52%), Gaps = 35/515 (6%)

Query: 1   PNEYVLFHLLRA-SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P+ Y    L +  + D+  + Y +QLH ++LK G   NVFV TAL+  Y     L  A  
Sbjct: 116 PDRYTFPFLFKGFTRDIALE-YGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARG 174

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F   P+  V++WN +IS Y + GK+ ++  LF+ +E  ++     +    L+AC +L  
Sbjct: 175 VFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKD 234

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+ G  +HS +    +E  +V+ N +IDMY  CG ++ A+                    
Sbjct: 235 LRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSAL-------------------- 274

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
                      G    + N D IS+  +++G    G+I+ A      MP  +  SW +++
Sbjct: 275 -----------GIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMI 323

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            GY+  NR  EAL LF  MQ+ +V  DE+T  ++L+  A L AL  G  I + + +  + 
Sbjct: 324 DGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIK 383

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
             + V +AL+DMY KCG V+ A+S+FR + +++  TW AMI G A NG   K +++F  +
Sbjct: 384 NDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNM 443

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
                L PD +T++ VL+AC+HT +  DK  +YF  MT  +GI+P + H   ++ L+ + 
Sbjct: 444 LKASIL-PDEITYIGVLSACTHTGL-VDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARA 501

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G +  A  +I  +   +  +VW ALL+      + D+A +   ++++LE D+  VYV+LC
Sbjct: 502 GRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLC 561

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           N+Y +   W+    +R  M ++G++K  GCS IE+
Sbjct: 562 NIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEM 596



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 123/247 (49%), Gaps = 6/247 (2%)

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
           ++GD + A  +   +P PN   WN+++ GY   +     + L+ EM  + V  D YTF  
Sbjct: 64  EYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPF 123

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332
           +  G     AL +G  +H  V+K GL  ++ V +AL+ MY  CGQ++ A  +F    + +
Sbjct: 124 LFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKAD 183

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIPFDKVSE 391
           ++TWN +I+ Y + G   +   LF  ++  + + P +VT + VL+ACS   D+   +  +
Sbjct: 184 VITWNMIISAYNKVGKFEESRRLFLVMED-KQVLPTTVTLVLVLSACSKLKDL---RTGK 239

Query: 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC 451
              S  K+  ++  +    +MI +    GE+  A  + R +      + W  ++S     
Sbjct: 240 KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDI-ISWTTIVSGFTNL 298

Query: 452 SDLDVAR 458
            ++DVAR
Sbjct: 299 GEIDVAR 305


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 169/555 (30%), Positives = 296/555 (53%), Gaps = 41/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  Y   +LL+   D       +++H  ++ + F +NVF  T ++  Y K   + DA+KM
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+  +VSWN++I+G+ Q+G  +KAL L + ++      D+ +  + L A   +G L
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +G +IH   ++    + V I+  L DMY KCGSVE A  +F  M  K ++SWNS++   
Sbjct: 265 MVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGY 324

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDA---------------I 221
            +NG  E A     ++     +P  ++  E ++  A  GD+E                 I
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDI 384

Query: 222 MILSSMPSPNSS--------------------SWNSILTGYVNRNRVPEALHLFGEMQSK 261
            +++S+ S  S                     SWN+++ GY    RV EAL+ F EM+S 
Sbjct: 385 SVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSL 444

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D +T  +++  +A LS       IH  +I+  LD +I V +AL+DMYSKCG + +A
Sbjct: 445 GMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMA 504

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  ++++TWNAMI GY  +G     ++LF+++K    ++P+ +T+L+V++ACSH
Sbjct: 505 RKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKK-GAVEPNDITYLSVISACSH 563

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           + +  D+   +F+SM +DYG++P+++H  +M+ L+G+ G +  A   I  +       V+
Sbjct: 564 SGL-VDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVY 622

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            A+L A     +++V   +A ++ +L  D    +V+L N+Y S   W   + +R  M ++
Sbjct: 623 GAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKK 682

Query: 502 GLRKEAGCSWIEVEN 516
           GL+K  GCS +E+ N
Sbjct: 683 GLKKTPGCSVVELRN 697



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 191/401 (47%), Gaps = 40/401 (9%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            Q+   ++K+G  +     T L+  + K  S+ +A ++F  I       +++++ GY ++
Sbjct: 66  HQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKN 125

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
                AL     +   ++    Y+FT  L  CG    L+ G  IH +++  S    V   
Sbjct: 126 SSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAM 185

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
             +++MY KC  ++DA  +F  M ++D++SWN++IA  ++NG  + A   + R+ +    
Sbjct: 186 TGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQR 245

Query: 199 PDTISYNEVINGIA-----------------------------------QFGDIEDAIMI 223
           PD+I+   V+   A                                   + G +E A +I
Sbjct: 246 PDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLI 305

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              M      SWNS++ GYV      +A+ +F +M  + +     T    L   A L  L
Sbjct: 306 FDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDL 365

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H  V +  L + I V ++L+ MYSKC +V+IA  +F +L  +  V+WNAMI GY
Sbjct: 366 ERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGY 425

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
           A+NG +++ +  F ++K++  ++PDS T ++V+ A +   +
Sbjct: 426 AQNGRVSEALNCFSEMKSL-GMKPDSFTMVSVIPALAELSV 465


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 169/553 (30%), Positives = 296/553 (53%), Gaps = 41/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN     ++L A S      + + +H +IL +G  S++ V TAL+  Y K  S  D  ++
Sbjct: 343 PNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQV 402

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++    +++WN++I G  + G + +A  ++ +++R  +  +  ++   L AC    +L
Sbjct: 403 FEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTAL 462

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IHS++VK      + + N LI MY +CGS++DA  +F +M+ KDIISW ++I   
Sbjct: 463 HWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGL 522

Query: 181 ARNGNLELAFGFLHRLPN----PDTISY-------------------------------- 204
           A++G    A      +      P+ ++Y                                
Sbjct: 523 AKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDA 582

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N ++N  +  G ++DA  +   M   +  ++N+++ GY   N   EAL LF  +Q +
Sbjct: 583 HVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEE 642

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D+ T+  ML+  A   +L W   IHS V+K G  +   + +AL+  Y+KCG    A
Sbjct: 643 GLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDA 702

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  + ++N+++WNA+I G A++G    V++LFE++K +  ++PD VTF+++L+ACSH
Sbjct: 703 LLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMK-MEGIKPDIVTFVSLLSACSH 761

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  ++   YF SM++D+GI PT+EH   M+ L+G+ G++   + +I+ + F +   +W
Sbjct: 762 AGL-LEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIW 820

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL A     ++ VA  +A   +KL+ D+  VYV L ++Y + G WD A+ +R  M +R
Sbjct: 821 GALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQR 880

Query: 502 GLRKEAGCSWIEV 514
           G+ KE G SWIEV
Sbjct: 881 GVTKEPGRSWIEV 893



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 208/399 (52%), Gaps = 40/399 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H   +K+  L +V V+  ++  Y K  S+ +A ++F ++   SVVSW  +I GY   
Sbjct: 264 REIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADC 323

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G    A  +F ++++  +  +  ++ + L A     +L+ G  +HS I+    E  + + 
Sbjct: 324 GHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVG 383

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
             L+ MY KCGS +D   VF +++++D+I+WN++I   A  GN E A    H++      
Sbjct: 384 TALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMM 443

Query: 199 PDTISY-----------------------------------NEVINGIAQFGDIEDAIMI 223
           P+ I+Y                                   N +I+  A+ G I+DA ++
Sbjct: 444 PNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLL 503

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
            + M   +  SW +++ G        EAL +F +MQ   +  +  T++++L+  +  +AL
Sbjct: 504 FNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAAL 563

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
            WG  IH  VI+ GL     VA+ L++MYS CG V+ A  +F  + ++++V +NAMI GY
Sbjct: 564 DWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGY 623

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           A +    + ++LF++L+    L+PD VT++N+L AC+++
Sbjct: 624 AAHNLGKEALKLFDRLQE-EGLKPDKVTYINMLNACANS 661



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 205/399 (51%), Gaps = 42/399 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEI--PQPSVVSWNSLISGYV 80
           +++H +I++   + + +   AL+  Y +  S+ +A +++ ++   + +V SWN+++ GYV
Sbjct: 161 REVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYV 220

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           Q G   +AL L  E+++  +     +    L++C    +L+ G  IH + +K  L   V 
Sbjct: 221 QYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVN 280

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-- 198
           +ANC+++MY KCGS+ +A  VF +M  K ++SW  +I   A  G+ E+AF    ++    
Sbjct: 281 VANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEG 340

Query: 199 --PDTISYNEVINGI-----------------------------------AQFGDIEDAI 221
             P+ I+Y  V+N                                     A+ G  +D  
Sbjct: 341 VVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCR 400

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   + + +  +WN+++ G        EA  ++ +MQ + +  ++ T+  +L+     +
Sbjct: 401 QVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPT 460

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL WG  IHS V+K G    I V +AL+ MY++CG ++ A  +F  + RK++++W AMI 
Sbjct: 461 ALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIG 520

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           G A++G   + + +F+ ++    L+P+ VT+ ++L ACS
Sbjct: 521 GLAKSGLGAEALAVFQDMQQA-GLKPNRVTYTSILNACS 558



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 157/339 (46%), Gaps = 43/339 (12%)

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           +GK R A+++   L++     ++  +   L  C ++  L  G  +H  I+++        
Sbjct: 120 TGKDR-AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYT 178

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEM--IDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            N LI+MY +CGS+E+A  V+ ++   ++ + SWN+++    + G +E A   L  +   
Sbjct: 179 VNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQH 238

Query: 200 ---------------------------------------DTISYNEVINGIAQFGDIEDA 220
                                                  D    N ++N  A+ G I +A
Sbjct: 239 GLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEA 298

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             +   M + +  SW  I+ GY +      A  +F +MQ + V  +  T+  +L+  +G 
Sbjct: 299 REVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGP 358

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           +AL WG  +HS ++  G ++ + V +AL+ MY+KCG  +    +F  L  ++L+ WN MI
Sbjct: 359 AALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMI 418

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            G A  G+  +  E++ Q++    + P+ +T++ +L AC
Sbjct: 419 GGLAEGGNWEEASEIYHQMQR-EGMMPNKITYVILLNAC 456



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/210 (19%), Positives = 90/210 (42%), Gaps = 6/210 (2%)

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
            A+ +   +Q +   ++   +  ML     +  L  G  +H  +I+          +AL+
Sbjct: 124 RAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALI 183

Query: 310 DMYSKCGQVEIADSMFRSL--CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           +MY +CG +E A  ++  L    + + +WNAM+ GY + G + + ++L  +++    L  
Sbjct: 184 NMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQ-HGLAL 242

Query: 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQR 427
              T + +L++C            + E+M         V +C  ++ +  + G +  A+ 
Sbjct: 243 GRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANC--ILNMYAKCGSIHEARE 300

Query: 428 MIRELGFGSYGVVWRALLSASGACSDLDVA 457
           +  ++   S  V W  ++     C   ++A
Sbjct: 301 VFDKMETKSV-VSWTIIIGGYADCGHSEIA 329


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 163/515 (31%), Positives = 272/515 (52%), Gaps = 35/515 (6%)

Query: 1   PNEYVLFHLLRA-SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P+ Y    L +  + D+  + Y +QLH ++LK G   NVFV TAL+  Y     L  A  
Sbjct: 137 PDRYTFPFLFKGFTRDIALE-YGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARG 195

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F   P+  V++WN +IS Y + GK+ ++  LF+ +E  ++     +    L+AC +L  
Sbjct: 196 VFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKD 255

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+ G  +HS +    +E  +V+ N +IDMY  CG ++ A+                    
Sbjct: 256 LRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSAL-------------------- 295

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
                      G    + N D IS+  +++G    G+I+ A      MP  +  SW +++
Sbjct: 296 -----------GIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMI 344

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            GY+  NR  EAL LF  MQ+ +V  DE+T  ++L+  A L AL  G  I + + +  + 
Sbjct: 345 DGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIK 404

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
             + V +AL+DMY KCG V+ A+S+FR + +++  TW AMI G A NG   K +++F  +
Sbjct: 405 NDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNM 464

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
                L PD +T++ VL+AC+HT +  DK  +YF  MT  +GI+P + H   ++ L+ + 
Sbjct: 465 LKASIL-PDEITYIGVLSACTHTGL-VDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARA 522

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G +  A  +I  +   +  +VW ALL+      + D+A +   ++++LE D+  VYV+LC
Sbjct: 523 GRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLC 582

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           N+Y +   W+    +R  M ++G++K  GCS IE+
Sbjct: 583 NIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEM 617



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 123/247 (49%), Gaps = 6/247 (2%)

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
           ++GD + A  +   +P PN   WN+++ GY   +     + L+ EM  + V  D YTF  
Sbjct: 85  EYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPF 144

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332
           +  G     AL +G  +H  V+K GL  ++ V +AL+ MY  CGQ++ A  +F    + +
Sbjct: 145 LFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKAD 204

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIPFDKVSE 391
           ++TWN +I+ Y + G   +   LF  ++  + + P +VT + VL+ACS   D+   +  +
Sbjct: 205 VITWNMIISAYNKVGKFEESRRLFLVMED-KQVLPTTVTLVLVLSACSKLKDL---RTGK 260

Query: 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC 451
              S  K+  ++  +    +MI +    GE+  A  + R +      + W  ++S     
Sbjct: 261 KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDI-ISWTTIVSGFTNL 319

Query: 452 SDLDVAR 458
            ++DVAR
Sbjct: 320 GEIDVAR 326


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  305 bits (780), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 174/556 (31%), Positives = 306/556 (55%), Gaps = 44/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+VL  ++RA + LG      QLH ++++SGF  +V+V T+L+ FY K  ++ +A  +
Sbjct: 149 PNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLV 208

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ + + V+W ++I+GY + G+   +L LF ++  + +  D Y  +S L+AC  L  L
Sbjct: 209 FDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFL 268

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH+ +++   E  V + N LID Y KC  V+    +F +M+ K+IISW ++I+  
Sbjct: 269 EGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGY 328

Query: 181 ARNG----NLELAFGFLHRLP-NPDTISYNEVI--------------------------- 208
            +N      ++L FG ++RL   PD  +   V+                           
Sbjct: 329 MQNSFDWEAMKL-FGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESD 387

Query: 209 ----NGI----AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               NG+    A+   + DA  +   M   N  S+N+++ GY ++ ++ EAL LF EM+ 
Sbjct: 388 EFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRV 447

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +    +E+TF+ +++  + L++L  G   H+ ++K GLD    V +AL+DMY+KCG +E 
Sbjct: 448 RLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEE 507

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  MF S   +++V WN+MI+ +A++G+  + + +F ++     +QP+ VTF+ VL+ACS
Sbjct: 508 ARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMK-EGIQPNYVTFVAVLSACS 566

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H     D ++ +F SM   +GIKP  EH   ++ L+G+ G+++ A+  I ++      +V
Sbjct: 567 HAGRVEDGLN-HFNSMP-GFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIV 624

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           WR+LLSA     ++++ + +A   I  +      Y++L N++ S G W     +R+ M  
Sbjct: 625 WRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDS 684

Query: 501 RGLRKEAGCSWIEVEN 516
             + KE G SWIEV N
Sbjct: 685 SEVVKEPGRSWIEVNN 700



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 204/421 (48%), Gaps = 41/421 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P      +LL+ S       + + +H  I+ SG  S+ F++  L+    K + + +A  +
Sbjct: 47  PKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVV 106

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER-SEIYADAYSFTSALAACGQLGS 119
           F ++P  ++++W+S++S Y Q G   +AL +FV+L+R S  + + +   S + AC QLG 
Sbjct: 107 FDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGV 166

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           ++ G  +H  +V+   ++ V +   LID Y K G++E+A  VF ++ +K  ++W ++IA 
Sbjct: 167 VEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAG 226

Query: 180 SARNGN--------------------------------LELAFG-------FLHRLPNPD 200
             + G                                 LE   G        L R    D
Sbjct: 227 YTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMD 286

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +I+   +   ++    +   M   N  SW ++++GY+  +   EA+ LFGEM  
Sbjct: 287 VSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNR 346

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
                D +  +++L+      AL  G  +H+  IK  L++   V + L+DMY+K   +  
Sbjct: 347 LGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLID 406

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  +  +N++++NAMI GY+    L++ +ELF +++ VR  +P+  TF  ++ A S
Sbjct: 407 AKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMR-VRLQKPNEFTFAALITAAS 465

Query: 381 H 381
           +
Sbjct: 466 N 466



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 80/164 (48%), Gaps = 3/164 (1%)

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
           +IH  +I  GL +   +A+ L+++ SK  +V+ A  +F  +  KNL+TW++M++ Y++ G
Sbjct: 70  IIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQG 129

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407
              + + +F  L+      P+     +V+ AC+   +  +K ++    + +  G    V 
Sbjct: 130 YSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGV-VEKGAQLHGFVVRS-GFDQDVY 187

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC 451
              S+I    + G +  A+ +  +L   +  V W  +++    C
Sbjct: 188 VGTSLIDFYSKNGNIEEARLVFDQLSEKT-AVTWTTIIAGYTKC 230


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 167/485 (34%), Positives = 274/485 (56%), Gaps = 8/485 (1%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           + F   AL+  Y K  S+ +    F  +P    VS+N+ I+G+  +   +++L LF  ++
Sbjct: 88  DXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQ 147

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           R       Y+  S L A  QL  L+ G  IH  I+  +    V I N L DMY KCG +E
Sbjct: 148 REGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIE 207

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIA 212
            A  +F  +  K+++SWN +I+  A+NG  E   G LH++      PD ++ + +I    
Sbjct: 208 QARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYC 267

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
           Q G +++A  + S     +   W +++ GY    R  +AL LF EM  + +  D YT S+
Sbjct: 268 QCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSS 327

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332
           ++S  A L++L  G  +H   I  GL+ +++V+SAL+DMYSKCG ++ A S+F  +  +N
Sbjct: 328 VVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRN 387

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           +V+WNAMI G A+NG     +ELFE +   +  +PD+VTF+ +L+AC H +   ++  EY
Sbjct: 388 VVSWNAMIVGCAQNGHDKDALELFENM-LQQKFKPDNVTFIGILSACLHCNW-IEQGQEY 445

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
           F+S++  +G+ PT++H   M+ L+G+ G + +A  +I+ +      ++W  LLS      
Sbjct: 446 FDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKG 505

Query: 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW-DVASVMRNFMRERGLRKEAGCSW 511
           D+  A ++A  + +L+      Y+ML N+Y S G W DVASV RN M+ + ++K AG SW
Sbjct: 506 DIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASV-RNLMKSKNVKKFAGFSW 564

Query: 512 IEVEN 516
           IE++N
Sbjct: 565 IEIDN 569



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 152/315 (48%), Gaps = 36/315 (11%)

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE-RGVVIA 142
           K +  L   V+L  S   A + ++T  +  C +   +     + S +  +  +     + 
Sbjct: 2   KAKSMLRQSVDLLCSRSTATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLH 61

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
           N L+ +Y K G + DA  +F +M+ +D  SWN++++A A++G+++       R+P  D++
Sbjct: 62  NQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSV 121

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
           SYN  I G +            +S P                     E+L LF  MQ + 
Sbjct: 122 SYNTTIAGFSG-----------NSCPQ--------------------ESLELFKRMQREG 150

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
               EYT  ++L+  A L  L +G  IH  +I +    ++ + +AL DMY+KCG++E A 
Sbjct: 151 FEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQAR 210

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA---C 379
            +F  L +KNLV+WN MI+GYA+NG   K I L  Q++    + PD VT   ++AA   C
Sbjct: 211 WLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHM-PDQVTMSTIIAAYCQC 269

Query: 380 SHTDIPFDKVSEYFE 394
              D      SE+ E
Sbjct: 270 GRVDEARRVFSEFKE 284



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 176/360 (48%), Gaps = 16/360 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P EY +  +L AS+ L    Y +Q+H  I+   FL NVF+  AL   Y K   +  A  +
Sbjct: 153 PTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWL 212

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + + ++VSWN +ISGY ++G+  K + L  ++  S    D  + ++ +AA  Q G +
Sbjct: 213 FDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRV 272

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM----IDKDIISWNSV 176
                + S+      E+ +V    ++  Y K G  EDA+ +F EM    I+ D  + +SV
Sbjct: 273 DEARRVFSEFK----EKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSV 328

Query: 177 IAASAR-----NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
           +++ A+     +G        L  L N   +S + +I+  ++ G I+DA  + + MP+ N
Sbjct: 329 VSSCAKLASLHHGQAVHGKSILAGLNNNLLVS-SALIDMYSKCGFIDDARSVFNLMPTRN 387

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SWN+++ G        +AL LF  M  +    D  TF  +LS     + +  G     
Sbjct: 388 VVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFD 447

Query: 292 CVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSLCR-KNLVTWNAMITGYARNGDL 349
            +  Q G+  ++   + ++++  + G++E A ++ +++    + + W+ +++  +  GD+
Sbjct: 448 SISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDI 507



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 153/300 (51%), Gaps = 23/300 (7%)

Query: 32  SGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNL 91
           SG + +    + ++  Y +   + +A ++F E  +  +V W +++ GY ++G+   AL L
Sbjct: 250 SGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLL 309

Query: 92  FVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGK 151
           F E+    I  D+Y+ +S +++C +L SL  G A+H K +   L   +++++ LIDMY K
Sbjct: 310 FNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSK 369

Query: 152 CGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPNPDTISYNEV 207
           CG ++DA  VF  M  ++++SWN++I   A+NG+    LEL    L +   PD +++  +
Sbjct: 370 CGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGI 429

Query: 208 I------NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           +      N I Q  +  D+I     M +P    +  ++       R+ +A+ L   M   
Sbjct: 430 LSACLHCNWIEQGQEYFDSISNQHGM-TPTLDHYACMVNLLGRTGRIEQAVALIKNMAHD 488

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG---LDASIVVASALL-DMYSKCGQ 317
               D   +ST+LS  +     T G ++++ V  +    LD +I V   +L +MY+  G+
Sbjct: 489 P---DFLIWSTLLSICS-----TKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGR 540


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 169/516 (32%), Positives = 284/516 (55%), Gaps = 34/516 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+Y    L++A++++   +  Q LH   +KS   S+VFV+ +L+  Y     L  A K+
Sbjct: 131 PNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKV 190

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I +  VVSWNS+I+G+VQ G   KAL LF ++E  ++ A   +    L+AC ++  L
Sbjct: 191 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDL 250

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  + S I +  +   + +AN ++DMY KCGS+EDA  +F  M +KD ++W +++   
Sbjct: 251 EFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTML--- 307

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                                       +G A   D E A  +L++MP  +  +WN++++
Sbjct: 308 ----------------------------DGYAISEDYEAAREVLNAMPKKDIVAWNALIS 339

Query: 241 GYVNRNRVPEALHLFGEMQ-SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            Y    +  EAL +F E+Q  K++ +++ T  + LS  A + AL  G  IHS + K G+ 
Sbjct: 340 AYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIK 399

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            +  V SAL+ MYSKCG +E A  +F S+ ++++  W+AMI G A +G  ++ +++F ++
Sbjct: 400 MNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKM 459

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           +   +++P+ VTF NV  ACSHT +  D+    F  M   YGI P  +H   ++ ++G+ 
Sbjct: 460 QEA-NVKPNGVTFTNVFCACSHTGL-VDEAESLFYKMESSYGIVPEDKHYACIVDVLGRS 517

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G + +A + I  +       VW ALL A    ++L +A ++   +++LE  +D  +V+L 
Sbjct: 518 GYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLS 577

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           N+Y   G WD  S +R  MR  GL+KE GCS IE++
Sbjct: 578 NIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEID 613


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 167/553 (30%), Positives = 294/553 (53%), Gaps = 41/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +L A S      + +++H  ++++G  +N  V  AL+  Y K  S+ DA ++
Sbjct: 143 PDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRV 202

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     VSW +L   Y +SG  +++L  +  + +  +     ++ + L+ACG L +L
Sbjct: 203 FDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAAL 262

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH++IV+      V ++  L  MY KCG+V+DA  VF  + ++D+I+WN++I   
Sbjct: 263 EKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGL 322

Query: 181 ARNGNLELAFGFLHRLPN----PDTISY-------------------------------- 204
             +G LE A G  HR+      PD ++Y                                
Sbjct: 323 VDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDV 382

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +IN  ++ G ++DA  +   MP  +  SW +++ GY +  +V E+   F +M  +
Sbjct: 383 RFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQ 442

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  ++ T+  +L   +   AL WG  IH+ V+K G+ A + VA+AL+ MY KCG VE A
Sbjct: 443 GVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDA 502

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +   +  +++VTWN +I G A+NG   + ++ FE +K+  +++P++ TF+NV++AC  
Sbjct: 503 IRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKS-EEMRPNATTFVNVMSACRV 561

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
            ++  ++    F SM KDYGI PT +H   M+ ++ + G +  A+ +I  + F     +W
Sbjct: 562 RNL-VEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMW 620

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL+A  A  ++++   +A + +KLE  +   YV L  +Y + G W   + +R  M+ER
Sbjct: 621 GALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKER 680

Query: 502 GLRKEAGCSWIEV 514
           G++KE G SWIEV
Sbjct: 681 GVKKEPGRSWIEV 693



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 200/400 (50%), Gaps = 44/400 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H +IL+ G   NV++   L+  Y    S+ +A ++F +    SVVSWN +ISGY   
Sbjct: 64  KQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHR 123

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G  ++A NLF  +++  +  D ++F S L+AC    +L  G  +H ++++  L     + 
Sbjct: 124 GLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVG 183

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLPN 198
           N LI MY KCGSV DA  VF  M  +D +SW ++  A A +G    +L+     L     
Sbjct: 184 NALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVR 243

Query: 199 PDTISYNEVINGIAQF-----------------------------------GDIEDAIMI 223
           P  I+Y  V++                                        G ++DA  +
Sbjct: 244 PSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREV 303

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +P+ +  +WN+++ G V+  ++ EA  +F  M  + V  D  T+  +LS  A    L
Sbjct: 304 FECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGL 363

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH+  +K GL + +   +AL++MYSK G ++ A  +F  + ++++V+W A++ GY
Sbjct: 364 ACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGY 423

Query: 344 ARNGDLTKVIELFEQLKTV--RDLQPDSVTFLNVLAACSH 381
           A   D  +V+E F   K +  + ++ + +T++ VL ACS+
Sbjct: 424 A---DCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSN 460



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 146/317 (46%), Gaps = 40/317 (12%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
           D+Y +   L +C +   L +G  +H  I+++ ++  V I N L+ +Y  CGSV +A  +F
Sbjct: 43  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLF 102

Query: 163 GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISY-------------- 204
            +  +K ++SWN +I+  A  G  + AF     +      PD  ++              
Sbjct: 103 DKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALN 162

Query: 205 ---------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYV 243
                                N +I+  A+ G + DA  +  +M S +  SW ++   Y 
Sbjct: 163 WGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYA 222

Query: 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV 303
                 E+L  +  M  + V     T+  +LS    L+AL  G  IH+ +++    + + 
Sbjct: 223 ESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVR 282

Query: 304 VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363
           V++AL  MY KCG V+ A  +F  L  ++++ WN MI G   +G L +   +F ++    
Sbjct: 283 VSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRM-LKE 341

Query: 364 DLQPDSVTFLNVLAACS 380
            + PD VT+L +L+AC+
Sbjct: 342 CVAPDRVTYLAILSACA 358



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 1/123 (0%)

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           +  K   +D Y +  +L        L  G  +H  +++ G+  ++ + + LL +Y  CG 
Sbjct: 35  LHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGS 94

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           V  A  +F     K++V+WN MI+GYA  G   +   LF  ++    L+PD  TF+++L+
Sbjct: 95  VNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQ-EGLEPDKFTFVSILS 153

Query: 378 ACS 380
           ACS
Sbjct: 154 ACS 156


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 178/552 (32%), Positives = 287/552 (51%), Gaps = 42/552 (7%)

Query: 2    NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
            N Y    +L+  + LG    C+++H Y+LK GF SN  V  +L+  Y K   +  AH +F
Sbjct: 469  NCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLF 528

Query: 62   VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             E+ +P VVSWNS+I+G V +G     L +F+++    +  D  +  S L A   +G+L 
Sbjct: 529  DELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLS 588

Query: 122  LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            LG A+H   VK      VV +N L+DMY KCG++  A  VF +M D  I+SW S IAA  
Sbjct: 589  LGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYV 648

Query: 182  RNGNLELAFGFLHRLPNP--------------------------DTISY----------- 204
            R G    A G    + +                           D  SY           
Sbjct: 649  REGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLP 708

Query: 205  --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
              N +IN  A+ G +E+A ++ S +P  +  SWN+++ GY   +   EAL LF +MQ + 
Sbjct: 709  VTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQF 768

Query: 263  VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
             P D+ T + +L   AGL+AL  G  IH  ++++G  + + VA AL+DMY+KCG + +A 
Sbjct: 769  KP-DDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQ 827

Query: 323  SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
             +F  + +K+L++W  MI GY  +G   + I  F +++ +  ++PD  +F  +L ACSH+
Sbjct: 828  LLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMR-IAGIEPDESSFSVILNACSHS 886

Query: 383  DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
             +  ++  ++F SM  + G++P +EH   ++ L+ + G + +A + I  +       +W 
Sbjct: 887  GL-LNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWG 945

Query: 443  ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
             LLS      D+ +A   A  + +LE D+   YV+L N+Y     W+    +R  M++RG
Sbjct: 946  VLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRG 1005

Query: 503  LRKEAGCSWIEV 514
             ++  GCSWIEV
Sbjct: 1006 FKQNPGCSWIEV 1017



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 200/422 (47%), Gaps = 56/422 (13%)

Query: 13  SSDLGWDTYC---------------QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
           S +LG ++YC               +++H  I+ +G   +  +   L+  Y     L   
Sbjct: 364 SYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQG 423

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
            K+F +I    V  WN L+S Y + G +R++++LF ++++  +  + Y+FT  L     L
Sbjct: 424 RKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAAL 483

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
           G ++    +H  ++K        + N LI  Y K G VE A  +F E+ + D++SWNS+I
Sbjct: 484 GKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMI 543

Query: 178 AASARN-----------------------------------GNLELA---FGF-LHRLPN 198
                N                                   GNL L     GF +    +
Sbjct: 544 NGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFS 603

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
            + +  N +++  ++ G++  A  +   M      SW S +  YV      +A+ LF EM
Sbjct: 604 EEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEM 663

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           QSK V  D YT ++++   A  S+L  G  +HS VIK G+ +++ V +AL++MY+KCG V
Sbjct: 664 QSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSV 723

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           E A  +F  +  K++V+WN MI GY++N    + +ELF  L   +  +PD +T   VL A
Sbjct: 724 EEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELF--LDMQKQFKPDDITMACVLPA 781

Query: 379 CS 380
           C+
Sbjct: 782 CA 783



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 151/347 (43%), Gaps = 42/347 (12%)

Query: 73  NSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132
           N+ I+ + + G  R A+ L  + +  E+  ++Y   S L  C +  SL+ G  +HS I+ 
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKSKSYELGLNSY--CSVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF 192
             +     +   L+ MY  CG +     +F ++++  +  WN +++  A+ GN   +   
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 457

Query: 193 LHRLPN---------------------------------------PDTISYNEVINGIAQ 213
             ++                                          +T   N +I    +
Sbjct: 458 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 517

Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
           FG +E A  +   +  P+  SWNS++ G V        L +F +M    V +D  T  ++
Sbjct: 518 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSV 577

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           L   A +  L+ G  +H   +K      +V ++ LLDMYSKCG +  A  +F  +    +
Sbjct: 578 LVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTI 637

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           V+W + I  Y R G  +  I LF+++++ + ++PD  T  +++ AC+
Sbjct: 638 VSWTSTIAAYVREGLYSDAIGLFDEMQS-KGVRPDIYTVTSIVHACA 683



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 115/265 (43%), Gaps = 34/265 (12%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
            P++  +  +L A + L      +++H +IL+ G+ S++ V+ AL+  Y K   L  A  +
Sbjct: 770  PDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLL 829

Query: 61   FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            F  IP+  ++SW  +I+GY   G   +A++ F E+  + I  D  SF+  L AC   G L
Sbjct: 830  FDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLL 889

Query: 121  QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
              G    +                   M  +CG            ++  +  +  V+   
Sbjct: 890  NEGWKFFN------------------SMRNECG------------VEPKLEHYACVVDLL 919

Query: 181  ARNGNLELAFGFLHRLP-NPDTISYNEVINGIAQFGDIEDAIMILSSM--PSPNSSSWNS 237
            AR GNL  A+ F+  +P  PDT  +  +++G     D++ A  +   +    P+++ +  
Sbjct: 920  ARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYV 979

Query: 238  ILTG-YVNRNRVPEALHLFGEMQSK 261
            +L   Y    +  E   L   MQ +
Sbjct: 980  VLANVYAEAEKWEEVKKLRKRMQKR 1004


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 163/554 (29%), Positives = 285/554 (51%), Gaps = 41/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++ V   +++A          +++H  I+  GF S+V V TAL   Y K  SL +A ++
Sbjct: 118 PDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQV 177

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+  VVSWN++I+GY Q+G+  +AL LF E++ + I  ++ +  S +  C  L +L
Sbjct: 178 FDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLAL 237

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH   ++  +E  V++ N L++MY KCG+V  A  +F  M  +D+ SWN++I   
Sbjct: 238 EQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGY 297

Query: 181 ARNGNLELAFGFLHRLP----NPDTISY-------------------------------- 204
           + N     A  F +R+      P++I+                                 
Sbjct: 298 SLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESND 357

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N ++N  A+ G++  A  +   MP  N  +WN+I++GY       EAL LF EMQ++
Sbjct: 358 VVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQ 417

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D +   ++L   A   AL  G  IH   I+ G ++++VV + L+D+Y+KCG V  A
Sbjct: 418 GIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTA 477

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  +++V+W  MI  Y  +G     + LF +++     + D + F  +L ACSH
Sbjct: 478 QKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQET-GTKLDHIAFTAILTACSH 536

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  D+  +YF+ M  DYG+ P +EH   ++ L+G+ G +  A  +I+ +       VW
Sbjct: 537 AGL-VDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVW 595

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL A     ++++   +A  + +L+ D+   YV+L N+Y     W+  + +R  M+E+
Sbjct: 596 GALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEK 655

Query: 502 GLRKEAGCSWIEVE 515
           G++K+ GCS + V 
Sbjct: 656 GVKKQPGCSVVAVH 669



 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 191/372 (51%), Gaps = 40/372 (10%)

Query: 49  RKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFT 108
           R++++ A+  +      + + V W   I GYV++G + KAL L+ +++R+ I  D   F 
Sbjct: 65  REVSACANQTQFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFL 124

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
           S + ACG    LQ G  +H  I+    E  V++   L  MY KCGS+E+A  VF  M  +
Sbjct: 125 SVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKR 184

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRL------PNP----------------------- 199
           D++SWN++IA  ++NG    A      +      PN                        
Sbjct: 185 DVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIH 244

Query: 200 ----------DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
                     D +  N ++N  A+ G++  A  +   MP  + +SWN+I+ GY   ++  
Sbjct: 245 CYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHH 304

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
           EAL  F  MQ + +  +  T  ++L   A L AL  G  IH   I+ G +++ VV +AL+
Sbjct: 305 EALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALV 364

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
           +MY+KCG V  A  +F  + +KN+V WNA+I+GY+++G   + + LF +++  + ++PDS
Sbjct: 365 NMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQA-QGIKPDS 423

Query: 370 VTFLNVLAACSH 381
              ++VL AC+H
Sbjct: 424 FAIVSVLPACAH 435


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 176/570 (30%), Positives = 315/570 (55%), Gaps = 64/570 (11%)

Query: 1   PNEYVL-------FHLLRASSDLGWDTYCQQLHCYILKSGFL-SNVFVSTALMGFYRKIN 52
           PN Y++       FH+L      G      ++H ++++SG L + + +   L+  Y K  
Sbjct: 384 PNSYMIILTAFPEFHVLENGKRKG-----SEVHAFLIRSGLLNAQIAIGNGLINMYAKCG 438

Query: 53  SLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALA 112
           ++ DA  +F  +     V+WNS+I+G  Q+ ++ +A+  F E+ R+E+Y   ++  SAL+
Sbjct: 439 AINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALS 498

Query: 113 ACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS 172
           +C  LG + +G  +H + +K  L+  V ++N L+ +YG+CG V++    F  M+D D +S
Sbjct: 499 SCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVS 558

Query: 173 WNSVIAASARN--GNLELAFGFLHRLP---NPDTISYNEVINGIAQFG------------ 215
           WNS+I A A +    LE    FL  +    +P+ +++  ++  ++               
Sbjct: 559 WNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALV 618

Query: 216 ---------DIEDAIM--------------ILSSMPS-PNSSSWNSILTGYVNRNRVPEA 251
                     IE+A++              I S M    +  SWNS+++GY++   +P+A
Sbjct: 619 LKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKA 678

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           + +   M  K   +D +TF+T+LS  A ++ L  GM +H C ++  L++ IV+ SAL+DM
Sbjct: 679 MDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDM 738

Query: 312 YSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371
           Y+KCG+++ A   F  +  +NL +WN+MI+GYAR+G  TK ++LF Q+K    L PD VT
Sbjct: 739 YAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPL-PDHVT 797

Query: 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431
           F+ VL+ACSH  +  +  S +F+SM++ YG+ P +EH   M+ L+G+ GE+ + +  + +
Sbjct: 798 FVGVLSACSHAGLVNEGFS-HFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQ 856

Query: 432 LGFGSYGVVWRALLSASGAC-----SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486
           +      ++WR +L   GAC      +  + R +A  ++++E  +   Y++L N+Y S G
Sbjct: 857 MPVKPNVLIWRTVL---GACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGG 913

Query: 487 NWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            WD  +  R  MR+  ++KEAGCSW+ +++
Sbjct: 914 KWDDVAKTRVAMRKAFVKKEAGCSWVTMKD 943



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 131/499 (26%), Positives = 230/499 (46%), Gaps = 71/499 (14%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           ++LH  + K+GF++++F+   L+  Y ++  L    K+F E+P  ++VSW+ LISGY ++
Sbjct: 93  EELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRN 152

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS--LQLGMAIHSKIVKYSLERGVV 140
               +A  LF ++       + Y+F S + AC + G   L+ GM IH  + K      V 
Sbjct: 153 RMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVT 212

Query: 141 IANCLIDMYGKC-GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF--------- 190
            +N LI MYG   G V+ A   F  +  ++++S NS+I+   + G+   AF         
Sbjct: 213 ASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKE 272

Query: 191 -----------------------------------------GFLHRLPNPDTISYNEVIN 209
                                                    GFLH     D    + +++
Sbjct: 273 VMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLH-----DLYVGSALVS 327

Query: 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
           G A+ G I  A  I   M   N  S N ++ G V + R  EA+ LF EM+   V ++  +
Sbjct: 328 GFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKD-SVELNPNS 386

Query: 270 FSTMLSGIAGLSALTWGML----IHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSM 324
           +  +L+       L  G      +H+ +I+ G L+A I + + L++MY+KCG +  A  +
Sbjct: 387 YMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVV 446

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
           FR +  K+ VTWN+MITG  +N    + ++ F++++   +L P + T ++ L++C+   +
Sbjct: 447 FRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRT-ELYPSNFTMISALSSCA--SL 503

Query: 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRAL 444
            +  V E         G+   V    +++ L G+ G V   Q+    L      V W +L
Sbjct: 504 GWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAF-SLMLDYDHVSWNSL 562

Query: 445 LSASGACSDLDVARISAAE 463
           +   GA +D + + + A E
Sbjct: 563 I---GALADSEPSMLEAVE 578



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 199/430 (46%), Gaps = 54/430 (12%)

Query: 1   PNEYVLFHLLRASSDLGWD--TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           PNEY    L+ A+  L        +QL   + KSGFL +++V +AL+  + K  S+  A 
Sbjct: 280 PNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAK 339

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
            +F ++   +VVS N LI G V+  +  +A+ LF+E++ S +  +  S+   L A  +  
Sbjct: 340 NIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDS-VELNPNSYMIILTAFPEFH 398

Query: 119 SLQLGMAIHSKIVKYSLERG-----VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISW 173
            L+ G    S++  + +  G     + I N LI+MY KCG++ DA  VF  M +KD ++W
Sbjct: 399 VLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTW 458

Query: 174 NSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFG-------------- 215
           NS+I    +N     A      +      P   +    ++  A  G              
Sbjct: 459 NSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLK 518

Query: 216 -------DIEDAIMIL--------------SSMPSPNSSSWNSILTGYVNRN-RVPEALH 253
                   + +A++ L              S M   +  SWNS++    +    + EA+ 
Sbjct: 519 LGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVE 578

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
            F  M       +  TF T+L+ ++ LS    G  IH+ V+K+ + A   + +ALL  Y 
Sbjct: 579 SFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYG 638

Query: 314 KCGQVEIADSMFRSLC-RKNLVTWNAMITGYARNGDLTKVIEL--FEQLKTVRDLQPDSV 370
           KCG +   +++F  +  R++ V+WN+MI+GY  N  L K +++  F   K  R    D  
Sbjct: 639 KCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQR---LDGF 695

Query: 371 TFLNVLAACS 380
           TF  VL+AC+
Sbjct: 696 TFATVLSACA 705


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 184/556 (33%), Positives = 290/556 (52%), Gaps = 45/556 (8%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
            P+E+    +L A + L      +QLH +I+K  F  N+FV   L+  Y K  +L +A + 
Sbjct: 448  PDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQ 507

Query: 61   FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            F  I     VSWN++I GYVQ     +A N+F  +    I  D  S  S L+ C  L +L
Sbjct: 508  FEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQAL 567

Query: 121  QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            + G  +H  +VK  L+  +   + LIDMY KCG++E A  VF  M  + ++S N++IA  
Sbjct: 568  EQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGY 627

Query: 181  ARNGNLELAFGFLHRLP----NPDTISYNEVIN---------------------GIAQFG 215
            A+N  +E A      +     NP  I++  +++                     G+   G
Sbjct: 628  AQNDLVE-AIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDG 686

Query: 216  DI---------------EDAIMILSSMPSPNSSS-WNSILTGYVNRNRVPEALHLFGEMQ 259
            D                 DA ++ S    P S+  W +I++G+       EAL L+ EM 
Sbjct: 687  DFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMH 746

Query: 260  SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
              +   D+ TF+++L   + L++L  G +IHS +   GLD+  +  SA++DMY+KCG ++
Sbjct: 747  RNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMK 806

Query: 320  IADSMFRSLCRKN-LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
             +  +F  +  KN +++WN+MI G+A+NG     +++F+++K  R ++PD VTFL VL A
Sbjct: 807  SSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTR-IRPDDVTFLGVLTA 865

Query: 379  CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
            CSH      +  E F+ M   Y I P ++HC  MI L+G+ G +  A+  I +L F    
Sbjct: 866  CSHAG-RVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNA 924

Query: 439  VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
            ++W  LL A     D    R +A ++I+LE ++   YV+L N+Y + GNWD  + +R  M
Sbjct: 925  MIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDEVNSVRRAM 984

Query: 499  RERGLRKEAGCSWIEV 514
            RE+GLRK  GCSWI V
Sbjct: 985  REKGLRKLPGCSWIVV 1000



 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 204/362 (56%), Gaps = 5/362 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H   LK GF S   + +A++  Y K  ++  A K F ++ +  +++WNS++S Y + 
Sbjct: 101 KTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQ 160

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   + +  F  L+   +  + +++   L++C +L  + LG  +H  ++K   E      
Sbjct: 161 GSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCE 220

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
             LIDMY KCGS+ DA  +F  ++D D +SW ++IA   + G  E A      +      
Sbjct: 221 GSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLV 280

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
           PD +++  VI      G ++DA  +   MP+ N  +WN +++G+V R    EA+  F  M
Sbjct: 281 PDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNM 340

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
               V     T  ++LS IA L AL +G+L+H+  IKQGL++++ V S+L++MY+KC ++
Sbjct: 341 WKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKM 400

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           E A  +F +L  +NLV WNAM+ GYA+NG  +KV++LF +++      PD  T+ ++L+A
Sbjct: 401 EAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGC-GFWPDEFTYTSILSA 459

Query: 379 CS 380
           C+
Sbjct: 460 CA 461



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 125/414 (30%), Positives = 210/414 (50%), Gaps = 45/414 (10%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           +L A + L    Y   +H   +K G  SNV+V ++L+  Y K   +  A K+F  + + +
Sbjct: 355 VLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERN 414

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           +V WN+++ GY Q+G   K + LF E+     + D +++TS L+AC  L  L++G  +HS
Sbjct: 415 LVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHS 474

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
            I+K++ E  + + N L+DMY KCG++E+A   F  + ++D +SWN++I    +  + + 
Sbjct: 475 FIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDE 534

Query: 189 AFGFLHRL----PNPDTISYNEVINGIAQF------------------------------ 214
           AF    R+      PD +S   +++G A                                
Sbjct: 535 AFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLID 594

Query: 215 -----GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
                G IE A  + S MPS +  S N+I+ GY  +N + EA+ LF EMQ++ +   E T
Sbjct: 595 MYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYA-QNDLVEAIDLFQEMQNEGLNPSEIT 653

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGL--DASIVVASALLDMYSKCGQVEIADSMFRS 327
           F+++L    G   L  G  IH  + K+GL  D   +  S LL MY    +   AD +F  
Sbjct: 654 FASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVS-LLVMYMNSQRKTDADILFSE 712

Query: 328 L-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
               K+ + W A+I+G+ +NG   + ++L++++    + +PD  TF +VL ACS
Sbjct: 713 FQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHR-NNARPDQATFASVLRACS 765



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 195/389 (50%), Gaps = 13/389 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++    +L + + L      +Q+HC ++K GF  N F   +L+  Y K  SL DA K+
Sbjct: 180 PNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKI 239

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +  P  VSW ++I+GYVQ G   +AL +F ++++  +  D  +F + + AC  LG L
Sbjct: 240 FDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRL 299

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA- 179
                +  ++   +    VV  N +I  + K G   +AI  F  M    + S  S + + 
Sbjct: 300 DDACDLFVQMPNTN----VVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSV 355

Query: 180 -SARNGNLELAFGFL------HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
            SA      L +G L       +  N +    + +IN  A+   +E A  +  ++   N 
Sbjct: 356 LSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNL 415

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
             WN++L GY       + + LF EM+      DE+T++++LS  A L  L  G  +HS 
Sbjct: 416 VLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSF 475

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           +IK   + ++ V + L+DMY+KCG +E A   F  +  ++ V+WNA+I GY +  D  + 
Sbjct: 476 IIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEA 535

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F ++  +  + PD V+  ++L+ C++
Sbjct: 536 FNMFRRM-ILDGIAPDEVSLASILSGCAN 563


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 168/555 (30%), Positives = 294/555 (52%), Gaps = 41/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  Y   +LL+   D       +++H  ++ + F +NVF  T ++  Y K   + DA+KM
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+  +VSWN++I+G+ Q+G  +KAL L + ++      D+ +  + L A   +G L
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +G +IH   ++    + V I+  L DMY KCGSVE A  +F  M  K ++SWNS++   
Sbjct: 265 MVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGY 324

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDA---------------I 221
            +NG  E A     ++     +P  ++  E ++  A  GD+E                 I
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDI 384

Query: 222 MILSSMPSPNSS--------------------SWNSILTGYVNRNRVPEALHLFGEMQSK 261
            +++S+ S  S                     SWN+++ GY    RV EAL+ F EM+S 
Sbjct: 385 SVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSL 444

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D +T  +++  +A LS       IH  +I+  LD +I V +AL+DMYSKCG + +A
Sbjct: 445 GMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMA 504

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  ++++TWNAMI GY  +G     ++LF+++K    ++P+ +T+L+V++ACSH
Sbjct: 505 RKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKK-GAVEPNDITYLSVISACSH 563

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           + +  D+   +F+SM +DYG++P+++H  +M+ L+G+ G +  A   I  +       V+
Sbjct: 564 SGL-VDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVY 622

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            A   A     +++V   +A ++ +L  D    +V+L N+Y S   W   + +R  M ++
Sbjct: 623 GAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKK 682

Query: 502 GLRKEAGCSWIEVEN 516
           GL+K  GCS +E+ N
Sbjct: 683 GLKKTPGCSVVELRN 697



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 191/401 (47%), Gaps = 40/401 (9%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            Q+   ++K+G  +     T L+  + K  S+ +A ++F  I       +++++ GY ++
Sbjct: 66  HQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKN 125

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
                AL     +   ++    Y+FT  L  CG    L+ G  IH +++  S    V   
Sbjct: 126 SSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAM 185

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
             +++MY KC  ++DA  +F  M ++D++SWN++IA  ++NG  + A   + R+ +    
Sbjct: 186 TGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQR 245

Query: 199 PDTISYNEVINGIA-----------------------------------QFGDIEDAIMI 223
           PD+I+   V+   A                                   + G +E A +I
Sbjct: 246 PDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLI 305

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              M      SWNS++ GYV      +A+ +F +M  + +     T    L   A L  L
Sbjct: 306 FDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDL 365

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H  V +  L + I V ++L+ MYSKC +V+IA  +F +L  +  V+WNAMI GY
Sbjct: 366 ERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGY 425

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
           A+NG +++ +  F ++K++  ++PDS T ++V+ A +   +
Sbjct: 426 AQNGRVSEALNCFSEMKSL-GMKPDSFTMVSVIPALAELSV 465


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 174/522 (33%), Positives = 275/522 (52%), Gaps = 45/522 (8%)

Query: 1   PNEYVLFHLLRASS---DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
           PN      +L A +   DL W  +   LH  I++     +V+    L+  Y K   L  A
Sbjct: 244 PNSMTYASVLSACTSIYDLEWGAH---LHARIVRMEPCLDVYAGCGLIDMYAKCGRLESA 300

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
            ++F  + + + VSW SLI G  Q+G   +AL LF ++    + +D ++  + L  C   
Sbjct: 301 RQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQ 360

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
             + +G  +H+  +   L+  V +AN L+ MY KCG V  A   F  M  +DIISW ++ 
Sbjct: 361 KDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAM- 419

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
                                         I   +Q GD+E A      MP  N  SWNS
Sbjct: 420 ------------------------------ITAFSQAGDVEKAREYFDKMPERNVISWNS 449

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           +L  Y+ R    E L ++ +M  + V  D  TFST +S  A L+ L  G  I +   K G
Sbjct: 450 MLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLG 509

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
             +++ VA++++ MYS+CGQ+E A  MF S+  KNLV+WNAM+ GYA+NG   KVIE+FE
Sbjct: 510 FSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFE 569

Query: 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIR 414
           ++  + ++ PD +++++VL+ CSH+      VSE   YF SMTKD+GI P  EH   M+ 
Sbjct: 570 KMLNIGNV-PDQISYVSVLSGCSHSGF----VSEGQYYFLSMTKDHGISPMSEHFVCMVD 624

Query: 415 LMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474
           L+G+ G++ +A+ +I ++ F     +W ALL+A     +  +A ++   +++L+ +    
Sbjct: 625 LLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGS 684

Query: 475 YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           Y +L N+Y+  G     + +R  MR++G+RK  GCSWIEV+N
Sbjct: 685 YCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPGCSWIEVDN 726



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 212/446 (47%), Gaps = 46/446 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           ++LH  ++  G  S++F+   L+  Y     ++DA+++F  I  P+V SWN++ISG+  S
Sbjct: 24  RKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFADS 83

Query: 83  GKYRKALNLFVEL-ERSEI--------YADAYSFTSALAACGQLGSLQLGMAIHSKIVKY 133
           G+ R+A  LF ++ ER  +        Y       + + A G LG L+L + +H    K+
Sbjct: 84  GQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLKLALQLHGFAEKF 143

Query: 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL 193
                  +   ++DMY KCG+++ A  VF                               
Sbjct: 144 DFGIDTCVETSVLDMYIKCGAMDFAQKVFC------------------------------ 173

Query: 194 HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
            R PNP    +N +I G +++G ++ A+ + + MP  ++ SWN++++         E L+
Sbjct: 174 -RTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLN 232

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
            F EM ++    +  T++++LS    +  L WG  +H+ +++      +     L+DMY+
Sbjct: 233 TFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYA 292

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           KCG++E A  +F  L   N V+W ++I G A+ G   + + LF Q++ V  +  D  T  
Sbjct: 293 KCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREV-PVASDQFTLA 351

Query: 374 NVLAAC-SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
            VL  C S  DI    + E   + T   G+  +V    +++ +  + G+VW+A      +
Sbjct: 352 TVLGVCLSQKDI---SIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELM 408

Query: 433 GFGSYGVVWRALLSASGACSDLDVAR 458
                 + W A+++A     D++ AR
Sbjct: 409 PIRDI-ISWTAMITAFSQAGDVEKAR 433


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 175/554 (31%), Positives = 289/554 (52%), Gaps = 42/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    + +A   L      + +H  ++K+G + ++ V ++L+G Y K N+   A  +
Sbjct: 104 PDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWL 163

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+  V  WN++IS Y QSG ++ AL  F  + R     ++ + T+A+++C +L  L
Sbjct: 164 FNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDL 223

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             GM IH +++         I++ L+DMYGKCG +E AI +F +M  K +++WNS+I+  
Sbjct: 224 NRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGY 283

Query: 181 ARNGNLELAFGFLHRLPN---------------------------------------PDT 201
              G++        R+ N                                       PD 
Sbjct: 284 GLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDV 343

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              + +++   + G +E A  I   +P     SWN +++GYV   ++ EAL LF EM+  
Sbjct: 344 FVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKS 403

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  D  TF+++L+  + L+AL  G  IH+ +I++ LD + VV  ALLDMY+KCG V+ A
Sbjct: 404 YVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEA 463

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            S+F+ L +++LV+W +MIT Y  +G     +ELF ++    +++PD V FL +L+AC H
Sbjct: 464 FSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFAEMLQ-SNVKPDRVAFLAILSACGH 522

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV-V 440
             +  D+   YF  M   YGI P VEH   +I L+G+ G +  A  ++++       V +
Sbjct: 523 AGL-VDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVEL 581

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
              L SA     ++D+    A  +I  + D    Y++L N+Y S   WD   V+R+ M+E
Sbjct: 582 LSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKE 641

Query: 501 RGLRKEAGCSWIEV 514
            GL+K  GCSWIE+
Sbjct: 642 LGLKKNPGCSWIEI 655



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 123/417 (29%), Positives = 210/417 (50%), Gaps = 42/417 (10%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65
           L  LLRA  +       + +H  ++  G  +++F+   L+  Y   +    A  +F  + 
Sbjct: 6   LLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNME 65

Query: 66  QPSVVS-WNSLISGYVQSGKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLGSLQLG 123
            P  +S WN L++GY ++  Y +AL LF + L    +  D+Y++ S   ACG L    LG
Sbjct: 66  NPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLG 125

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
             IH+ ++K  L   +V+ + L+ MYGKC + E AI +F EM +KD+  WN+VI+   ++
Sbjct: 126 KMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQS 185

Query: 184 GNLELA---FGFLHRL---PNPDTIS------------------YNEVING--------- 210
           GN + A   FG + R    PN  TI+                  + E+IN          
Sbjct: 186 GNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFIS 245

Query: 211 ------IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
                   + G +E AI I   MP     +WNS+++GY  +  +   + LF  M ++ V 
Sbjct: 246 SALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVK 305

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
               T S+++   +  + L  G  +H   I+  +   + V S+L+D+Y KCG+VE+A+ +
Sbjct: 306 PTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKI 365

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           F+ + +  +V+WN MI+GY   G L + + LF +++    ++ D++TF +VL ACS 
Sbjct: 366 FKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSY-VESDAITFTSVLTACSQ 421



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 169/386 (43%), Gaps = 45/386 (11%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
           D       L AC    SL+ G  IH K+V   L+  + +   LI+ Y  C   + A  VF
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVF 61

Query: 163 GEMIDKDIIS-WNSVIAASARN----GNLELAFGFLH-RLPNPDTISYNEVING------ 210
             M +   IS WN ++A   +N      LEL    LH     PD+ +Y  V         
Sbjct: 62  DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHR 121

Query: 211 --------------------------IAQFGD---IEDAIMILSSMPSPNSSSWNSILTG 241
                                     +  +G     E AI + + MP  + + WN++++ 
Sbjct: 122 YVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISC 181

Query: 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
           Y       +AL  FG M+      +  T +T +S  A L  L  GM IH  +I  G    
Sbjct: 182 YYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLD 241

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
             ++SAL+DMY KCG +E+A  +F  + +K +V WN+MI+GY   GD+   I+LF+++  
Sbjct: 242 SFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYN 301

Query: 362 VRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGE 421
              ++P   T  +++  CS +    +   ++    T    I+P V    S++ L  + G+
Sbjct: 302 -EGVKPTLTTLSSLIMVCSRSARLLE--GKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGK 358

Query: 422 VWRAQRMIRELGFGSYGVVWRALLSA 447
           V  A+++ + +   S  V W  ++S 
Sbjct: 359 VELAEKIFKLIP-KSKVVSWNVMISG 383



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
           MD      +L       +L  G LIH  V+  GL   I +   L++ Y  C   + A  +
Sbjct: 1   MDTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCV 60

Query: 325 FRSL---CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           F ++   C  +L  WN ++ GY +N    + +ELFE+L     L+PDS T+ +V  AC
Sbjct: 61  FDNMENPCEISL--WNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKAC 116


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 171/532 (32%), Positives = 280/532 (52%), Gaps = 41/532 (7%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QLH + LKS F  +  + TA +  Y K   + DA K+F  +P P   S+N++I GY +  
Sbjct: 260 QLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQD 319

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           +  KAL++F  L+R+ +  D  S + AL AC  +     G+ +H   VK  L   + +AN
Sbjct: 320 QGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVAN 379

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN----GNLELAFGFLHRLPNP 199
            ++DMYGKCG++ +A  +F EM  +D +SWN++IAA  +N      L L    L     P
Sbjct: 380 TILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEP 439

Query: 200 DTISYNEVINGIA-----------------------------------QFGDIEDAIMIL 224
           D  +Y  V+   A                                   + G + +A  I 
Sbjct: 440 DDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIH 499

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
           + +    + SWNSI++G+ ++ +   A   F +M    +  D YT++T+L   A ++ + 
Sbjct: 500 ARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIE 559

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  IH+ ++K  L + + +AS L+DMYSKCG ++ +  MF    +++ VTW+AMI  YA
Sbjct: 560 LGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYA 619

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
            +G   K I LFE+++ + +++P+   F++VL AC+H     DK   YF+ M   YG+ P
Sbjct: 620 YHGLGEKAINLFEEMQLL-NVKPNHTIFISVLRACAHMGY-VDKGLHYFQKMLSHYGLDP 677

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
            +EH   M+ L+G+ G+V  A ++I  + F +  V+WR LLS      +++VA  +   +
Sbjct: 678 QMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNSL 737

Query: 465 IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           ++L+      YV+L N+Y   G W   + MR+ M+   L+KE GCSWIEV +
Sbjct: 738 LQLDPQDSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIEVRD 789



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 220/452 (48%), Gaps = 74/452 (16%)

Query: 1   PNEYVLF-HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRK--------- 50
           P + + F H+L+  S+L      +Q+H  ++ +GF+  ++V+  L+ FY K         
Sbjct: 3   PTKKLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFK 62

Query: 51  ----------------------INSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKA 88
                                 I ++  A  +F  +P+  VVSWNSL+S Y+ +G  RK+
Sbjct: 63  VFDRMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKS 122

Query: 89  LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
           + +FV +   +I  D  +F   L AC  +    LG+ +H   ++   E  VV  + L+DM
Sbjct: 123 IEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDM 182

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN-----------LELAFGF----- 192
           Y KC  ++DA  VF EM +++++ W++VIA   +N             L++  G      
Sbjct: 183 YSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTY 242

Query: 193 ------------------LHRLPNPDTISYNEVI-----NGIAQFGDIEDAIMILSSMPS 229
                             LH        +Y+ +I     +  A+   + DA  + +++P+
Sbjct: 243 ASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPN 302

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
           P   S+N+I+ GY  +++  +AL +F  +Q  ++  DE + S  L+  + +     G+ +
Sbjct: 303 PPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQL 362

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H   +K GL  +I VA+ +LDMY KCG +  A  +F  + R++ V+WNA+I  + +N ++
Sbjct: 363 HGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEI 422

Query: 350 TKVIELF-EQLKTVRDLQPDSVTFLNVLAACS 380
            K + LF   L++   ++PD  T+ +V+ AC+
Sbjct: 423 VKTLSLFVSMLRST--MEPDDFTYGSVVKACA 452



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 157/333 (47%), Gaps = 39/333 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +++A +      Y  ++H  I+KSG   + FV +AL+  Y K   L +A K+
Sbjct: 439 PDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKI 498

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
              + + + VSWNS+ISG+    +   A   F ++    I  D Y++ + L  C  + ++
Sbjct: 499 HARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATI 558

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IH++I+K  L   V IA+ L+DMY KCG+++D+  +F +   +D ++W+++I A 
Sbjct: 559 ELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAY 618

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           A +G  E A      +         +++N                    PN + + S+L 
Sbjct: 619 AYHGLGEKAINLFEEM---------QLLN------------------VKPNHTIFISVLR 651

Query: 241 GYVNRNRVPEALHLFGEMQSK---DVPMDEYTFSTMLSGIAGL--SALTWGMLIHSCVIK 295
              +   V + LH F +M S    D  M+ Y+    L G +G    AL    LI S    
Sbjct: 652 ACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALK---LIES---- 704

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
              +A  V+   LL      G VE+A+  F SL
Sbjct: 705 MPFEADDVIWRTLLSNCKMQGNVEVAEKAFNSL 737



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 12/198 (6%)

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
           P  + TFS +L   + L AL  G  +H+ +I  G   +I VA+ LL  Y K  ++  A  
Sbjct: 3   PTKKLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFK 62

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F  + ++++++WN +I GYA  G++     LF+ +      + D V++ ++L+   H  
Sbjct: 63  VFDRMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMP-----ERDVVSWNSLLSCYLHNG 117

Query: 384 IPFDKVSEYFE----SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +    +  +       +  DY     +   CS I   G   +V     +  ++GF +  V
Sbjct: 118 VNRKSIEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQV---HCLAIQMGFENDVV 174

Query: 440 VWRALLSASGACSDLDVA 457
              AL+     C  LD A
Sbjct: 175 TGSALVDMYSKCKKLDDA 192


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 168/516 (32%), Positives = 286/516 (55%), Gaps = 34/516 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+Y    L++A++++   +  Q LH   +KS   S+VFV+ +L+  Y     L  A K+
Sbjct: 129 PNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKV 188

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I +  VVSWNS+I+G+VQ G   KAL LF ++E  ++ A   +    L+AC ++ +L
Sbjct: 189 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNL 248

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  + S I +  +   + +AN ++DMY KCGS+EDA  +F  M +KD ++W +++   
Sbjct: 249 EFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTML--- 305

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                                       +G A   D E A  +L+SMP  +  +WN++++
Sbjct: 306 ----------------------------DGYAISEDYEAAREVLNSMPQKDIVAWNALIS 337

Query: 241 GYVNRNRVPEALHLFGEMQ-SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            Y    +  EAL +F E+Q  K++ +++ T  + LS  A + AL  G  IHS + K G+ 
Sbjct: 338 AYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIR 397

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            +  V SAL+ MYSKCG +E +  +F S+ ++++  W+AMI G A +G   + +++F ++
Sbjct: 398 MNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKM 457

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           +   +++P+ VTF NV  ACSHT +  D+    F  M  +YGI P  +H   ++ ++G+ 
Sbjct: 458 QEA-NVKPNGVTFTNVFCACSHTGL-VDEAESLFHQMESNYGIVPEEKHYACIVDVLGRS 515

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G + +A + I  +       VW ALL A    ++L++A ++   +++LE  +D  +V+L 
Sbjct: 516 GYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLS 575

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           N+Y   G W+  S +R  MR  GL+KE GCS IE++
Sbjct: 576 NIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEID 611


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 168/518 (32%), Positives = 281/518 (54%), Gaps = 34/518 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    L++A+S+L      +  H  ++K    S+VF+  +L+ FY K   L   +++
Sbjct: 134 PDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRV 193

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           FV IP+  VVSWNS+I+ +VQ G   +AL LF E+E   +  +  +    L+AC +    
Sbjct: 194 FVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDF 253

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +HS I +  +   + ++N ++DMY KCGSVEDA  +F +M               
Sbjct: 254 EFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKM--------------- 298

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                           P  D +S+  ++ G A+ G+ + A  I  +MP+ + ++WN++++
Sbjct: 299 ----------------PEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALIS 342

Query: 241 GYVNRNRVPEALHLFGEMQ-SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            Y    +  EAL LF E+Q SK    DE T  + LS  A L A+  G  IH  + KQG+ 
Sbjct: 343 AYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMK 402

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            +  + ++L+DMY KCG ++ A  +F S+ RK++  W+AMI G A +G     I LF ++
Sbjct: 403 LNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKM 462

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           +  + ++P++VTF N+L ACSH  +  ++   +F  M   YG+ P V+H   M+ ++G+ 
Sbjct: 463 QEDK-VKPNAVTFTNILCACSHVGL-VEEGRTFFNQMELVYGVLPGVKHYACMVDILGRA 520

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G +  A  +I ++       VW ALL A     ++ +A  + +++I+LE  +   YV+L 
Sbjct: 521 GLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLS 580

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           N+Y   G WD  S +R  MR+ GL+KE GCS IEV+ +
Sbjct: 581 NIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGI 618


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 158/497 (31%), Positives = 267/497 (53%), Gaps = 18/497 (3%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGF--YRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H   +K+G + N  +   ++ F   R+   +  A ++F  IP+PSV SWN +  GY 
Sbjct: 31  KQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYS 90

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           +    +  ++L++E+    +  D Y++        +  +LQLG  +H  +VKY L+  V 
Sbjct: 91  RIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVF 150

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
             N LI+MY  CG ++ A G+F      D+++WN++I+   R                 D
Sbjct: 151 AHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNR--------------IKKD 196

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            IS+  ++ G    G ++ A      MP  +  SW +++ GY+  N   EAL LF EMQ+
Sbjct: 197 VISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQT 256

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             +  DE+T  ++L+  A L AL  G  I + + K  +     V +AL+DMY KCG VE+
Sbjct: 257 SKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEM 316

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A S+F +L +++  TW AM+ G A NG   + + +F Q+     + PD VT++ VL+AC+
Sbjct: 317 ALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKA-SVTPDEVTYVGVLSACT 375

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           HT +  D+  ++F SMT  +GI+P + H   M+ L+G+ G +  A  +I+ +      +V
Sbjct: 376 HTGM-VDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIV 434

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W ALL A     D ++A  +  ++++LE ++  VYV+ CN+Y +   WD    +R  M +
Sbjct: 435 WGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMD 494

Query: 501 RGLRKEAGCSWIEVENV 517
           RG++K  GCS IE+  +
Sbjct: 495 RGIKKTPGCSLIEMNGI 511



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 97/191 (50%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+ +  +L A + LG     + +  YI K+   ++ FV  AL+  Y K  ++  A  +
Sbjct: 261 PDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSI 320

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +PQ    +W +++ G   +G   +ALN+F ++ ++ +  D  ++   L+AC   G +
Sbjct: 321 FNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMV 380

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G    + +  ++ +E  +    C++D+ GK G +++A  +   M +  + I W +++ 
Sbjct: 381 DEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLG 440

Query: 179 ASARNGNLELA 189
           A   + + E+A
Sbjct: 441 ACRIHKDAEMA 451


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 165/526 (31%), Positives = 276/526 (52%), Gaps = 34/526 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            Q+   I+ +GF  N +++  L+     +  +  A ++F +IP P++  WNS+  GY QS
Sbjct: 55  HQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQS 114

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
             YR+ + LF +++  +I  + ++F   L +CG++ +L  G  +H  ++K        + 
Sbjct: 115 ESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVG 174

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA--------SARN----------- 183
             LIDMY   G+V DA  +F EM ++++++W S+I          SAR            
Sbjct: 175 TTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVV 234

Query: 184 ------------GNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
                       G++  A    H +PN D + +N V+ G A  G++E    +   MP  N
Sbjct: 235 LWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERN 294

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSK-DVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
             SWN+++ GY +     E L  F  M S+ DVP ++ T  T+LS  A L AL  G  +H
Sbjct: 295 IFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVH 354

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
                 GL  ++ V +AL+DMY+KCG +E A S+FR +  K+L++WN +I G A +    
Sbjct: 355 VYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGA 414

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
             + LF Q+K     +PD +TF+ +L AC+H  +  D  + YF+SM  DY I P +EH  
Sbjct: 415 DALNLFFQMKNAGQ-KPDGITFIGILCACTHMGLVEDGFA-YFQSMADDYLIMPQIEHYG 472

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            M+ ++ + G + +A   +R++   + GV+W  LL A     ++++A ++   +I+LE  
Sbjct: 473 CMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPK 532

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +   YVML N+Y   G W+  + ++  MR+ G +K  GCS IEV +
Sbjct: 533 NPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVND 578



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 2/198 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+  L  +L A + LG     + +H Y   SG   NV+V  ALM  Y K   + +A  +
Sbjct: 329 PNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISV 388

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    ++SWN+LI G     +   ALNLF +++ +    D  +F   L AC  +G +
Sbjct: 389 FRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLV 448

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G A   S    Y +   +    C++DM  + G +E A+    +M ++ D + W  ++ 
Sbjct: 449 EDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLG 508

Query: 179 ASARNGNLELAFGFLHRL 196
           A     N+ELA   L RL
Sbjct: 509 ACRIYKNVELAELALQRL 526


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 180/554 (32%), Positives = 292/554 (52%), Gaps = 42/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A   L      + +H  ++K+G + ++ V ++L+G Y K N+   A  +
Sbjct: 104 PDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWL 163

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+  V  WN++IS Y QSG +++AL  F  + R     ++ + T+A+++C +L  L
Sbjct: 164 FNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDL 223

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             GM IH +++         I++ L+DMYGKCG +E AI VF +M  K +++WNS+I+  
Sbjct: 224 NRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGY 283

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVI---------------------NGIA--- 212
              G+         R+ N    P   + + +I                     N I    
Sbjct: 284 GLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDV 343

Query: 213 -----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                      + G +E A  I   +P     SWN +++GYV   ++ EAL LF EM+  
Sbjct: 344 FINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKS 403

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  D  TF+++L+  + L+AL  G  IH+ +I++ LD + VV  ALLDMY+KCG V+ A
Sbjct: 404 YVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEA 463

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            S+F+ L +++LV+W +MIT Y  +G     +ELF ++    +++PD VTFL +L+AC H
Sbjct: 464 FSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQ-SNMKPDRVTFLAILSACGH 522

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV-V 440
             +  D+   YF  M   YGI P VEH   +I L+G+ G +  A  ++++       V +
Sbjct: 523 AGL-VDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVEL 581

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
              L SA     ++D+    A  +I  + D    Y++L N+Y S   WD   V+R+ M+E
Sbjct: 582 LSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKE 641

Query: 501 RGLRKEAGCSWIEV 514
            GL+K  GCSWIE+
Sbjct: 642 LGLKKNPGCSWIEI 655



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 123/417 (29%), Positives = 212/417 (50%), Gaps = 42/417 (10%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65
           L  LLRA  +       + +H  ++  G  +++F+   L+  Y   +    A  +F  + 
Sbjct: 6   LLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNME 65

Query: 66  QPSVVS-WNSLISGYVQSGKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLGSLQLG 123
            P  +S WN L++GY ++  Y +AL LF + L    +  D+Y++ S L ACG L    LG
Sbjct: 66  NPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLG 125

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
             IH+ +VK  L   +V+ + L+ MY KC + E AI +F EM +KD+  WN+VI+   ++
Sbjct: 126 KMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQS 185

Query: 184 GNLELA---FGFLHRL---PNPDTIS------------------YNEVING--------- 210
           GN + A   FG + R    PN  TI+                  + E+IN          
Sbjct: 186 GNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFIS 245

Query: 211 ------IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
                   + G +E AI +   MP     +WNS+++GY  +      + LF  M ++ V 
Sbjct: 246 SALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVK 305

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
               T S+++   +  + L  G  +H   I+  + + + + S+L+D+Y KCG+VE+A+++
Sbjct: 306 PTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENI 365

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           F+ + +  +V+WN MI+GY   G L + + LF +++    ++PD++TF +VL ACS 
Sbjct: 366 FKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSY-VEPDAITFTSVLTACSQ 421



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 141/321 (43%), Gaps = 42/321 (13%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
           D       L AC    SL+ G  IH K+V   L+  + +   LI++Y  C   + A  VF
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVF 61

Query: 163 GEMIDKDIIS-WNSVIAASARN----GNLELAFGFLH-RLPNPDTISYNEVINGI----- 211
             M +   IS WN ++A   +N      LEL    LH     PD+ +Y  V+        
Sbjct: 62  DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYK 121

Query: 212 ------------------------------AQFGDIEDAIMILSSMPSPNSSSWNSILTG 241
                                         A+    E AI + + MP  + + WN++++ 
Sbjct: 122 YVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISC 181

Query: 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
           Y       EAL  FG M+      +  T +T +S  A L  L  GM IH  +I  G    
Sbjct: 182 YYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLD 241

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
             ++SAL+DMY KCG +E+A  +F  + +K +V WN+MI+GY   GD    I+LF+++  
Sbjct: 242 SFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYN 301

Query: 362 VRDLQPDSVTFLNVLAACSHT 382
              ++P   T  +++  CS +
Sbjct: 302 -EGVKPTLTTLSSLIMVCSRS 321



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 5/118 (4%)

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
           MD      +L       +L  G LIH  V+  GL   I +   L+++Y  C   + A  +
Sbjct: 1   MDTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCV 60

Query: 325 FRSL---CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           F ++   C  +L  WN ++ GY +N    + +ELFE+L     L+PDS T+ +VL AC
Sbjct: 61  FDNMENPCEISL--WNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKAC 116


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 171/555 (30%), Positives = 290/555 (52%), Gaps = 41/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  Y   +LL+   D       +++HC ++ +GF SNVF  T ++  Y K   + +A+KM
Sbjct: 173 PVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKM 232

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+  +V WN++ISGY Q+G  + AL L + ++      D+ +  S L A   +GSL
Sbjct: 233 FDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSL 292

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           ++G +IH   ++   E  V ++  L+DMY KCGSV  A  +F  M  K ++SWNS+I   
Sbjct: 293 RIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGY 352

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVING----IAQFGDIED----------------- 219
            +NG+   A     ++ +      N  + G     A  GD+E                  
Sbjct: 353 VQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDV 412

Query: 220 ------------------AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                             A  I  ++      SWN+++ GY    R+ EA+  F +MQ +
Sbjct: 413 SVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQ 472

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           ++  D +T  +++  +A LS L     IH  VI+  LD ++ VA+AL+DMY+KCG V  A
Sbjct: 473 NIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTA 532

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  +++ TWNAMI GY  +G     +ELFE++K    ++P+ VTFL VL+ACSH
Sbjct: 533 RKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKK-EVIKPNEVTFLCVLSACSH 591

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           + +  ++  +YF SM KDYG++P ++H  +M+ L+G+   +  A   I+++       V+
Sbjct: 592 SGL-VEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVF 650

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            A+L A     ++++   +A  +  L+ D    +V+L N+Y +   WD  + +R  M ++
Sbjct: 651 GAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKK 710

Query: 502 GLRKEAGCSWIEVEN 516
           G++K  G S +E++N
Sbjct: 711 GIQKTPGWSVVELQN 725



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 198/419 (47%), Gaps = 45/419 (10%)

Query: 4   YVLFHLLRASSDLGWD--TYCQQLHCYI---LKSGFLSNVFVSTALMGFYRKINSLADAH 58
           Y+  H+ +  S +  +  T  ++LH +I   +K+G  S     T L+  + K  SL +A 
Sbjct: 70  YIPSHVYKHPSAILLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAA 129

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           ++F  I       +++++ GY ++     A++ F  +    +    Y+FT  L  CG   
Sbjct: 130 RVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNA 189

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            L+ G  IH +++       V     +++MY KC  VE+A  +F  M ++D++ WN++I+
Sbjct: 190 DLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIIS 249

Query: 179 ASARNG----NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIE---------------- 218
             A+NG     LEL          PD+I+   ++  +A  G +                 
Sbjct: 250 GYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFES 309

Query: 219 -------------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                               A +I   M      SWNS++ GYV       A+ +F +M 
Sbjct: 310 FVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMM 369

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            + V M   T    L   A L  +  G  +H  + +  L + + V ++L+ MYSKC +V+
Sbjct: 370 DEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVD 429

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           IA  +F +L  K LV+WNAMI GYA+NG + + I+ F +++ +++++PDS T ++V+ A
Sbjct: 430 IAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQ-LQNIKPDSFTMVSVIPA 487


>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
 gi|194706828|gb|ACF87498.1| unknown [Zea mays]
          Length = 570

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 171/517 (33%), Positives = 272/517 (52%), Gaps = 36/517 (6%)

Query: 1   PNEYVLFHLLRASSDL-GWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           PNE+ L  +++A +    WD     +H   LK GF+  VFV+ AL+  Y    SL D+ +
Sbjct: 43  PNEFTLPFVVKACTRAQAWDN-ALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRR 101

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
            F E+   +VVSWNS+I GY Q+G  R+A  LF E+ R     D ++  S L AC Q G+
Sbjct: 102 FFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGN 161

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+ G  +H  ++       +++   L+DMY KCG +  A   F  M  K ++SW S++ A
Sbjct: 162 LEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCA 221

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
             ++G+++ A  +                                  MP  N+ SWN+++
Sbjct: 222 QTKHGSVDAARCWF-------------------------------DHMPERNTVSWNTMI 250

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           + YV R +  EAL L+ +MQS     DE T   +LS    +  LT G ++H  +     +
Sbjct: 251 SCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIHN 310

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
             I + ++LLDMY+KCGQV+ A  +FR +C +N+V+WN +I G A +G     I  F  +
Sbjct: 311 PDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDAITFFRSM 370

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
             VR+  PD +TF+ +L++CSH  +  +    YFESM   Y +K  VEH   M+ L+G++
Sbjct: 371 --VRNTSPDGITFVALLSSCSHGGL-LETGQHYFESMRHVYNVKHEVEHYACMVDLLGRR 427

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G + +A  +I+E+      VVW ALL A     ++ + +    ++++LEG S  ++V++ 
Sbjct: 428 GHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQVIKQLLELEGISGGLFVLIS 487

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           NL      W+    +R  M+ERG RK+ G S IE+ N
Sbjct: 488 NLLYETNQWEDMKRLRKLMKERGTRKDMGVSSIEINN 524



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 106/230 (46%), Gaps = 6/230 (2%)

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
           P+   +N+I   Y N +   EAL L   M  + V  +E+T   ++       A    + +
Sbjct: 8   PDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQAWDNALAV 67

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H   +K G    + VA+ALL  Y+  G +  +   F  +  +N+V+WN+MI GYA+ GD 
Sbjct: 68  HGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDT 127

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT-DIPFDKVSEYFESMTKDYGIKPTVEH 408
            +   LF +++  +    D  T  ++L ACS   ++ F ++      ++   G    +  
Sbjct: 128 REACALFGEMRR-QGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVS---GSPVDLIL 183

Query: 409 CCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
             +++ +  + G++  A+R    +   S  V W ++L A      +D AR
Sbjct: 184 GGALVDMYSKCGDLCMARRCFEMMPIKSV-VSWTSMLCAQTKHGSVDAAR 232


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 172/552 (31%), Positives = 298/552 (53%), Gaps = 41/552 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +++ L  +LR  S LG     + +H +++K+GF  NVFV T L+  Y K   +++A  +F
Sbjct: 161 SQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLF 220

Query: 62  --VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
             +E  + + V W ++++GY Q+G   KA+  F  +    +  + Y+F + L AC  + +
Sbjct: 221 KGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLA 280

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
              G  +H  IVK      V + + L+DMY KCG +++A  +   M D D++SWNS++  
Sbjct: 281 RCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVG 340

Query: 180 SARNGNLELA---FGFLH---------RLP-----------NPDTIS------------- 203
             R+G  E A   F  +H           P           NP ++              
Sbjct: 341 FVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKL 400

Query: 204 -YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +++  A+ GD++ A  +   M   +  SW S++TGY   N   E+L +F +M+   
Sbjct: 401 VSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTG 460

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V  D++  +++LS  A L+ L +G  +H   IK GL  S  V ++L+ MY+KCG ++ AD
Sbjct: 461 VNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDAD 520

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           ++F S+  K+++TW A+I GYA+NG     ++ ++ + +    +PD +TF+ +L ACSH 
Sbjct: 521 AIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVS-SGTRPDFITFIGLLFACSHA 579

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  D+  +YF+ M K YGIKP  EH   MI L G+ G++  A++++ ++       VW+
Sbjct: 580 GL-VDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWK 638

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
           +LLSA     +L++A  +A  + +LE  +   YVML N+Y++   W+  + +R  M+ +G
Sbjct: 639 SLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKG 698

Query: 503 LRKEAGCSWIEV 514
           + KE GCSW+E+
Sbjct: 699 IVKEPGCSWLEI 710



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 197/418 (47%), Gaps = 79/418 (18%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSL--------------------- 75
           +++ +  L+    K   + DA K+F ++PQ    SWN++                     
Sbjct: 64  SIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCS 123

Query: 76  ----------ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA 125
                     ISGY + G   +A +LF  +      A  ++  S L  C  LG +Q G  
Sbjct: 124 CKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEM 183

Query: 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG--EMIDKDIISWNSVIAASARN 183
           IH  +VK   E  V +   L+DMY KC  V +A  +F   E   K+ + W +++   A+N
Sbjct: 184 IHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQN 243

Query: 184 GNLELA---FGFLH-------RLPNPDTIS---------YNEVINGI------------- 211
           G+   A   F ++H       +   P  ++         + E ++G              
Sbjct: 244 GDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQ 303

Query: 212 -------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
                  A+ GD+++A  +L +M   +  SWNS++ G+V      EAL LF  M  +++ 
Sbjct: 304 SALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMK 363

Query: 265 MDEYTFSTMLSG--IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +D+YTF ++L+   +  ++  +    +H  +IK G +   +V++AL+DMY+K G ++ A 
Sbjct: 364 IDDYTFPSVLNCCVVGSINPKS----VHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAY 419

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           ++F  +  K++++W +++TGYA+N    + +++F  ++ V  + PD     ++L+AC+
Sbjct: 420 TVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMR-VTGVNPDQFIVASILSACA 476



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 153/342 (44%), Gaps = 56/342 (16%)

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           + I   N ++   +++G +  A     ++P  D  S+N +I+     G + +A  +    
Sbjct: 63  ESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGC 122

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
              +S +W+SI++GY       EA  LF  M+ +     ++T  ++L   + L  +  G 
Sbjct: 123 SCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGE 182

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL--CRKNLVTWNAMITGYAR 345
           +IH  V+K G + ++ V + L+DMY+KC  V  A+ +F+ L   RKN V W AM+TGYA+
Sbjct: 183 MIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQ 242

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
           NGD  K +E F  +   + ++ +  TF  +L ACS                         
Sbjct: 243 NGDGYKAVEFFRYMHA-QGVECNQYTFPTILTACSSV----------------------- 278

Query: 406 VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465
                 + R  G++         I + GFGS   V  AL+     C DL     +A  ++
Sbjct: 279 ------LARCFGEQ-----VHGFIVKSGFGSNVYVQSALVDMYAKCGDLK----NAKNML 323

Query: 466 KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEA 507
           +   D D V            +W+  S+M  F+R  GL +EA
Sbjct: 324 ETMEDDDVV------------SWN--SLMVGFVRH-GLEEEA 350



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++++  +L A ++L    + +Q+H   +KSG   +  V  +L+  Y K   L DA  +
Sbjct: 463 PDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAI 522

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           FV +    V++W ++I GY Q+GK R +L  +  +  S    D  +F   L AC   G +
Sbjct: 523 FVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLV 582

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G     ++ K Y ++ G     C+ID++G+ G +++A  +  +M +  D   W S+++
Sbjct: 583 DEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLS 642

Query: 179 ASARNGNLELA 189
           A   + NLELA
Sbjct: 643 ACRVHENLELA 653


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 164/555 (29%), Positives = 291/555 (52%), Gaps = 41/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL A +  G     +QLH Y++K+G  S++ V  AL+  Y   + +  AH+M
Sbjct: 312 PDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEM 371

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F+     +VV WN ++  + +     ++  +F +++   +  + +++ S L  C  +G+L
Sbjct: 372 FLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGAL 431

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IH++++K   +  V + + LIDMY K G ++ A  +   + + D++SW ++I+  
Sbjct: 432 DLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGY 491

Query: 181 ARNGNLELAFGFLHRLPN----PDTISY-------------------------------- 204
           A++     A      + N     D I +                                
Sbjct: 492 AQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDL 551

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +++  A+ G I++A +    + + +S SWN +++G+       +AL +F +M   
Sbjct: 552 SIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRA 611

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +    +TF + +S  A ++ +  G  IH+ +IK+G D+ I V++AL+  Y+KCG +E A
Sbjct: 612 KLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDA 671

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F  +  KN V+WNAMITGY+++G   + + LFE++K V ++ P+ VTF+ VL+ACSH
Sbjct: 672 RREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEM-PNHVTFVGVLSACSH 730

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +   K   YFESM+K++G+ P   H   ++ L+ + G + RA++ I E+       +W
Sbjct: 731 VGL-VTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIW 789

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LLSA     +++V   +A  +++LE +    YV+L N+Y   G WD     R  MR R
Sbjct: 790 RTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNR 849

Query: 502 GLRKEAGCSWIEVEN 516
           G++KE G SWIEV+N
Sbjct: 850 GVKKEPGRSWIEVKN 864



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 208/421 (49%), Gaps = 43/421 (10%)

Query: 1   PNEYVLFHLLRASSD--LGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           P E     +LRA S   +G   Y +Q+H  I+  G L +  +S  L+G Y K   +  A 
Sbjct: 109 PTEISFASVLRACSGHRIGI-RYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISAR 167

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           K+F  +     VSW ++ISG+ Q+G   +A++LF E+  + I+   Y F+S L+ C ++ 
Sbjct: 168 KVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIK 227

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
              +G  +H+ + KY       + N L+ +Y +  +   A  VF +M  KD +S+NS+I+
Sbjct: 228 LFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLIS 287

Query: 179 ASAR----NGNLELAFGFLHRLPNPDTISYNEVINGIAQFG------------------- 215
             A+    +G LEL          PD ++   +++  A  G                   
Sbjct: 288 GLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISS 347

Query: 216 ----------------DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                           DI+ A  +  +  + N   WN +L  +   + + E+  +F +MQ
Sbjct: 348 DMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQ 407

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            K +  +++T+ ++L     + AL  G  IH+ VIK G   ++ V S L+DMY+K G+++
Sbjct: 408 IKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLD 467

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  + R+L   ++V+W A+I+GYA++    + ++ F+++   R +Q D++ F + ++AC
Sbjct: 468 TAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLN-RGIQSDNIGFSSAISAC 526

Query: 380 S 380
           +
Sbjct: 527 A 527



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 125/466 (26%), Positives = 218/466 (46%), Gaps = 44/466 (9%)

Query: 22  CQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           C++LH  ILK GF +   +   L+  Y  +  L    K+F ++P  SV SW+ +ISG+++
Sbjct: 29  CKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFME 88

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAAC-GQLGSLQLGMAIHSKIVKYSLERGVV 140
                + L+LF  +    +     SF S L AC G    ++    IH++I+ + L    +
Sbjct: 89  KKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPI 148

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA---FGFLHR-- 195
           I+N LI +Y K G +  A  VF  +  KD +SW ++I+  ++NG  E A   F  +H   
Sbjct: 149 ISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAG 208

Query: 196 -LPNP---------------------------------DTISYNEVINGIAQFGDIEDAI 221
             P P                                 +T   N ++   ++  +   A 
Sbjct: 209 IFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAE 268

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            + S M S +  S+NS+++G   +     AL LF +M+   +  D  T +++LS  A   
Sbjct: 269 KVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNG 328

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL  G  +HS VIK G+ + ++V  ALLD+Y  C  ++ A  MF +   +N+V WN M+ 
Sbjct: 329 ALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLV 388

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            + +  +L++   +F Q++ ++ L P+  T+ ++L  C  T +    + E   +     G
Sbjct: 389 AFGKLDNLSESFRIFRQMQ-IKGLIPNQFTYPSILRTC--TSVGALDLGEQIHTQVIKTG 445

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
            +  V  C  +I +  + G++  A  ++R L      V W AL+S 
Sbjct: 446 FQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDV-VSWTALISG 490



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 151/327 (46%), Gaps = 43/327 (13%)

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           +E   I A+  ++   L  C   GSL     +H KI+K       V+ N L+D+Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAA----SARNGNLELAFGFLHRLPNPDTISY------ 204
           ++  + VF +M ++ + SW+ +I+        N  L+L    +    +P  IS+      
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 205 ------------------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSS 234
                                         N +I   A+ G I  A  +  ++ + +S S
Sbjct: 121 CSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVS 180

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
           W ++++G+       EA+HLF EM +  +    Y FS++LSG   +     G  +H+ V 
Sbjct: 181 WVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVF 240

Query: 295 KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
           K G      V +AL+ +YS+      A+ +F  +  K+ V++N++I+G A+ G     +E
Sbjct: 241 KYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALE 300

Query: 355 LFEQLKTVRD-LQPDSVTFLNVLAACS 380
           LF ++K  RD L+PD VT  ++L+AC+
Sbjct: 301 LFTKMK--RDYLKPDCVTVASLLSACA 325


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 163/551 (29%), Positives = 288/551 (52%), Gaps = 41/551 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE+ L  +L+  ++       Q +H  I+K G+  N F+   L+  Y K     DA  +F
Sbjct: 313 NEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVF 372

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             I +P +V W++LI+   Q G+  +++ LF  +   +   + Y+  S L+A    G+LQ
Sbjct: 373 KTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQ 432

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G +IH+ + KY  E  V ++N L+ MY K G V D   ++  M+D+D+ISWN+ ++   
Sbjct: 433 YGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLH 492

Query: 182 RNGNLELAFG-FLHRLPN---PDTISYNEVINGIAQFGDI-------------------- 217
             G  +     F H L     P+  ++  ++   +   D+                    
Sbjct: 493 DCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNF 552

Query: 218 ---------------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                          EDA +  + +   +  +W  I+T Y   N+  +AL+ F +MQ + 
Sbjct: 553 VCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEG 612

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V  +E+T +  LSG + L++L  G  +HS V K G  + + V SAL+DMY+KCG +E A+
Sbjct: 613 VKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAE 672

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           ++F +L R++ + WN +I GYA+NG   K +  F  +     + PD VTF  +L+ACSH 
Sbjct: 673 ALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLD-EGISPDGVTFTGILSACSHQ 731

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  ++  E+F SM +D+GI PTV+HC  M+ ++G+ G+    +  I+++      ++W 
Sbjct: 732 GL-VEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWE 790

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
            +L AS   ++L +   +A ++ +L+ + +  Y++L N++ + G WD    +R+ M  +G
Sbjct: 791 TVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKG 850

Query: 503 LRKEAGCSWIE 513
           ++KE GCSW+E
Sbjct: 851 VKKEPGCSWVE 861



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 196/424 (46%), Gaps = 50/424 (11%)

Query: 1   PNEYVLFHLLRASS-----DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLA 55
           PNE+ L   L+A S     DLG     +Q+H    K G L ++FV +AL+  Y K   + 
Sbjct: 211 PNEFTLATGLKACSLCMALDLG-----KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIE 265

Query: 56  DAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACG 115
            A KMF+ +P+ + V+WN L++GY Q G     L LF  +   ++  + ++ T+ L  C 
Sbjct: 266 LASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCA 325

Query: 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175
              +L+ G  IHS I+K   E    I   L+DMY KCG   DAIGVF  +   DI+ W++
Sbjct: 326 NSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSA 385

Query: 176 VIAASARNGNLELAFGFLH------RLPNPDTIS-------------------------- 203
           +I    + G  E +    H       LPN  TI                           
Sbjct: 386 LITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYG 445

Query: 204 -------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
                   N ++    + G + D   +  SM   +  SWN+ L+G  +       L +F 
Sbjct: 446 FETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFY 505

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
            M  +    + YTF ++L   + L  + +G  +H+ +IK  LD +  V +AL+DMY+KC 
Sbjct: 506 HMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCM 565

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            +E AD  F  L  ++L TW  +IT YA+     K +  F Q++    ++P+  T    L
Sbjct: 566 YLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQ-EGVKPNEFTLAGCL 624

Query: 377 AACS 380
           + CS
Sbjct: 625 SGCS 628



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 184/397 (46%), Gaps = 40/397 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H  I+K     +  +  +L+  Y K    A A  +  ++P   VVSW +LI G V  
Sbjct: 132 KAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAE 191

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G    ++ LF E++   I  + ++  + L AC    +L LG  +H++  K  L   + + 
Sbjct: 192 GFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVG 251

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPN 198
           + L+D+Y KCG +E A  +F  M +++ ++WN ++   A+ G+    L+L    +     
Sbjct: 252 SALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVK 311

Query: 199 PDTISYNEVINGIAQFGDIE-----------------------------------DAIMI 223
            +  +   V+ G A   +++                                   DAI +
Sbjct: 312 CNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGV 371

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
             ++  P+   W++++T    + +  E++ LF  M+  D   ++YT  ++LS       L
Sbjct: 372 FKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNL 431

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
            +G  IH+CV K G +  + V++AL+ MY K G V     ++ S+  ++L++WNA ++G 
Sbjct: 432 QYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGL 491

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
              G   + + +F  +       P+  TF+++L +CS
Sbjct: 492 HDCGMYDRPLTIFYHMLE-EGFIPNMYTFISILGSCS 527



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 144/315 (45%), Gaps = 40/315 (12%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
           ++S L  C    SL +  AIH  IVK  +     +   L+++Y KC     A  V  +M 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHR------LPNPDTISY---------------- 204
           D+D++SW ++I      G    +            +PN  T++                 
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 205 -----------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
                            + +++  A+ G+IE A  +   MP  N  +WN +L GY  R  
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307
           V   L LF  M   DV  +E+T +T+L G A    L  G +IHS +IK G + +  +   
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           L+DMYSKCG    A  +F+++ + ++V W+A+IT   + G   + I+LF  L  + D  P
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLF-HLMRLGDTLP 413

Query: 368 DSVTFLNVLAACSHT 382
           +  T  ++L+A ++T
Sbjct: 414 NQYTICSLLSAATNT 428



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 113/234 (48%), Gaps = 5/234 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+ L   L   S L      QQLH  + KSG +S++FV +AL+  Y K   + +A  +
Sbjct: 615 PNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEAL 674

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +   ++WN++I GY Q+G+  KAL  F  +    I  D  +FT  L+AC   G +
Sbjct: 675 FEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLV 734

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G    +S    + +   V    C++D+ G+ G  ++      +M + ++ + W +V+ 
Sbjct: 735 EEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLG 794

Query: 179 ASARNGNL---ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           AS  + NL   E A   L  L   +  SY  + N  A  G  +D   + S M S
Sbjct: 795 ASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSS 848


>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 519

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 158/503 (31%), Positives = 281/503 (55%), Gaps = 11/503 (2%)

Query: 23  QQLHCYILKSGFLSNV--------FVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNS 74
           +Q+H  ++ +GF +NV         +ST+L+G          AH++F +IPQP    +N 
Sbjct: 19  KQIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQIPQPDTFMYNV 78

Query: 75  LISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS 134
           +I G  QS    +A++L+ E+ R  +  D+Y+F   L AC +L  +  G A+H  +++  
Sbjct: 79  MIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNTGSAVHGMVLRLG 138

Query: 135 LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH 194
                V+ N L+  + KCG +  A  +F +    D+++W+S+IA  AR G+L++A    +
Sbjct: 139 FGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKVARKLFN 198

Query: 195 RLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
            +P  D +S+N +I G  + G++E A M+    P  +  SWN+++ GYV      +AL L
Sbjct: 199 EMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALEL 258

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA-SIVVASALLDMYS 313
           F EM    V  DE T  ++LS  A L  L  G  +H+ V++  +   S ++ +AL+DMY+
Sbjct: 259 FNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNALIDMYA 318

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           KCG ++ +  +F S+  K++++WN++I G A +G   + + LF+ ++  + + P+ +TF+
Sbjct: 319 KCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTK-ICPNEITFV 377

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
            VL ACSH     D+  +YF+ M+ +Y I+P + HC  M+ ++G+ G +  A + I  + 
Sbjct: 378 GVLVACSHAG-EIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKFIDSMK 436

Query: 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
                ++WR LL+A     D+++A+++  ++  +  D    YV++ NLY S G WD A  
Sbjct: 437 IEPNAIIWRTLLAACKVHGDVELAKVANEKLFSMRKDHSGDYVLMSNLYASRGEWDGAEK 496

Query: 494 MRNFMRERGLRKEAGCSWIEVEN 516
           +R  M + G+ K  G S++E  N
Sbjct: 497 VRKLMDDSGVTKIRGSSFVEACN 519



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 193/442 (43%), Gaps = 59/442 (13%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + Y    +L+A + L W      +H  +L+ GF SN  V   L+ F+ K   L  A  +F
Sbjct: 107 DSYTFPFVLKACTRLFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLF 166

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            +  +  VV+W+SLI+GY + G  + A  LF E+   ++ +     T  +   G++ S +
Sbjct: 167 DDSCKGDVVAWSSLIAGYARRGDLKVARKLFNEMPERDLVSWNVMITGYVKQ-GEMESAR 225

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM----IDKDIISWNSVI 177
           +       +   +  + VV  N +I  Y  CG  + A+ +F EM    +  D ++  S++
Sbjct: 226 M-------LFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLL 278

Query: 178 AASARNGNLELAFGFLHR-----LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           +A A  G+LE       +     +    T+  N +I+  A+ G+I++++ +  S+   + 
Sbjct: 279 SACADLGDLENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCGNIKESLDVFWSITDKDV 338

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
            SWNS++ G        E+L LF  MQ   +  +E TF  +L   +           H+ 
Sbjct: 339 ISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFVGVLVACS-----------HAG 387

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
            I +G            D+ S   ++E            N+     M+    R G L + 
Sbjct: 388 EIDEGYK--------YFDLMSSEYKIE-----------PNIRHCGCMVDMLGRAGLLKEA 428

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACS-HTDIPFDKVS-EYFESMTKDYGIKPTVEHCC 410
            +  + +K    ++P+++ +  +LAAC  H D+   KV+ E   SM KD+     +    
Sbjct: 429 AKFIDSMK----IEPNAIIWRTLLAACKVHGDVELAKVANEKLFSMRKDHSGDYVL---- 480

Query: 411 SMIRLMGQKGEVWRAQRMIREL 432
            M  L   +GE W     +R+L
Sbjct: 481 -MSNLYASRGE-WDGAEKVRKL 500



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 103/193 (53%), Gaps = 5/193 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILK--SGFLSNVFVSTALMGFYRKINSLADAH 58
           P+E  L  LL A +DLG     +++H  +++   G LS + +  AL+  Y K  ++ ++ 
Sbjct: 269 PDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTL-LGNALIDMYAKCGNIKESL 327

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
            +F  I    V+SWNS+I G    G  +++L+LF  ++R++I  +  +F   L AC   G
Sbjct: 328 DVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFVGVLVACSHAG 387

Query: 119 SLQLGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSV 176
            +  G      +  +Y +E  +    C++DM G+ G +++A      M I+ + I W ++
Sbjct: 388 EIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKFIDSMKIEPNAIIWRTL 447

Query: 177 IAASARNGNLELA 189
           +AA   +G++ELA
Sbjct: 448 LAACKVHGDVELA 460


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 172/533 (32%), Positives = 279/533 (52%), Gaps = 41/533 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  I+KS    N  V   L+  Y +   L +A  +F  + + S  SWN++I+GYV+ 
Sbjct: 48  KQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEH 107

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
                A+ LF E+    +  +A ++   L AC  L +L+ G  +H+ I    LE  V + 
Sbjct: 108 KHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVG 167

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
             L+ MYGKCGS+ +A  +F  +++ DIISW  +I A A++GN + A+  + ++      
Sbjct: 168 TALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFK 227

Query: 199 PDTISYNEVINGIA-----------------------------------QFGDIEDAIMI 223
           P+ I+Y  ++N  A                                   + G I+DA ++
Sbjct: 228 PNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVV 287

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              M   +  SWN ++  +    R  EA  LF +MQ++    D   F ++L+  A   AL
Sbjct: 288 FDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGAL 347

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
            W   IH   +  GL+  + V +AL+ MYSK G ++ A  +F  +  +N+V+WNAMI+G 
Sbjct: 348 EWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGL 407

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A++G     +E+F ++ T   ++PD VTF+ VL+ACSH  +  +  S+Y  +MT+ YGI+
Sbjct: 408 AQHGLGQDALEVFRRM-TAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYL-AMTQVYGIE 465

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           P V HC  M+ L+G+ G +  A+  I  +        W ALL +     ++++  + A E
Sbjct: 466 PDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKE 525

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            +KL+  +   YV+L N+Y   G WD+ S +R  MRERG+RKE G SWIEV+N
Sbjct: 526 RLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDN 578



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/445 (24%), Positives = 196/445 (44%), Gaps = 47/445 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      +L+A + L    + +++H  I   G  S+V V TAL+  Y K  S+ +A ++
Sbjct: 127 PNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRI 186

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    ++SW  +I  Y QSG  ++A  L +++E+     +A ++ S L AC   G+L
Sbjct: 187 FDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGAL 246

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +    +H   +   LE  V +   L+ MY K GS++DA  VF  M  +D++SWN +I A 
Sbjct: 247 KWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAF 306

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIA------------------------ 212
           A +G    A+    ++      PD I +  ++N  A                        
Sbjct: 307 AEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDV 366

Query: 213 -----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                      + G I+DA ++   M   N  SWN++++G        +AL +F  M + 
Sbjct: 367 RVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAH 426

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-QGLDASIVVASALLDMYSKCGQVEI 320
            V  D  TF  +LS  +    +  G   +  + +  G++  +   + ++D+  + G++  
Sbjct: 427 GVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLME 486

Query: 321 ADSMFRSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR-DLQPDSVTFLNVLAA 378
           A     ++    +  TW A++      G+    +EL E +   R  L P +     +L+ 
Sbjct: 487 AKLFIDNMAVDPDEATWGALLGSCRTYGN----VELGELVAKERLKLDPKNAATYVLLSN 542

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIK 403
                  +D VS +  +M ++ GI+
Sbjct: 543 IYAEAGKWDMVS-WVRTMMRERGIR 566



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 147/329 (44%), Gaps = 41/329 (12%)

Query: 91  LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
           L   L+R  I  D++ +   L  C +   L     +H  I+K  +E+   + N L+ +Y 
Sbjct: 16  LMNRLQRGLI-TDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYI 74

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL----HRLPNPDTISYNE 206
           +CG +++A  VF  ++ K   SWN++IA    + + E A        H    P+  +Y  
Sbjct: 75  ECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMI 134

Query: 207 VINGIAQF-----------------------------------GDIEDAIMILSSMPSPN 231
           ++   A                                     G I +A  I  ++ + +
Sbjct: 135 ILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHD 194

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SW  ++  Y       EA  L  +M+ +    +  T+ ++L+  A   AL W   +H 
Sbjct: 195 IISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHR 254

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
             +  GL+  + V +AL+ MY+K G ++ A  +F  +  +++V+WN MI  +A +G   +
Sbjct: 255 HALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHE 314

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             +LF Q++T    +PD++ FL++L AC+
Sbjct: 315 AYDLFLQMQT-EGCKPDAIMFLSILNACA 342



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 93/187 (49%), Gaps = 3/187 (1%)

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
           N + EA+ +      + +  D + +  +L        L     +H C+IK  ++ +  V 
Sbjct: 7   NTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVM 66

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           + LL +Y +CG+++ A  +F +L +K+  +WNAMI GY  +      + LF ++     +
Sbjct: 67  NNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREM-CHEGV 125

Query: 366 QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425
           QP++ T++ +L AC+   +   K  +   +  +  G++  V    +++R+ G+ G +  A
Sbjct: 126 QPNAGTYMIILKACA--SLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEA 183

Query: 426 QRMIREL 432
           +R+   L
Sbjct: 184 RRIFDNL 190


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 163/551 (29%), Positives = 288/551 (52%), Gaps = 41/551 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE+ L  +L+  ++       Q +H  I+K G+  N F+   L+  Y K     DA  +F
Sbjct: 313 NEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVF 372

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             I +P +V W++LI+   Q G+  +++ LF  +   +   + Y+  S L+A    G+LQ
Sbjct: 373 KTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQ 432

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G +IH+ + KY  E  V ++N L+ MY K G V D   ++  M+D+D+ISWN+ ++   
Sbjct: 433 YGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLH 492

Query: 182 RNGNLELAFG-FLHRLPN---PDTISYNEVINGIAQFGDI-------------------- 217
             G  +     F H L     P+  ++  ++   +   D+                    
Sbjct: 493 DCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNF 552

Query: 218 ---------------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                          EDA +  + +   +  +W  I+T Y   N+  +AL+ F +MQ + 
Sbjct: 553 VCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEG 612

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V  +E+T +  LSG + L++L  G  +HS V K G  + + V SAL+DMY+KCG +E A+
Sbjct: 613 VKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAE 672

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           ++F +L R++ + WN +I GYA+NG   K +  F  +     + PD VTF  +L+ACSH 
Sbjct: 673 ALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLD-EGISPDGVTFTGILSACSHQ 731

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  ++  E+F SM +D+GI PTV+HC  M+ ++G+ G+    +  I+++      ++W 
Sbjct: 732 GL-VEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWE 790

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
            +L AS   ++L +   +A ++ +L+ + +  Y++L N++ + G WD    +R+ M  +G
Sbjct: 791 TVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKG 850

Query: 503 LRKEAGCSWIE 513
           ++KE GCSW+E
Sbjct: 851 VKKEPGCSWVE 861



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 196/424 (46%), Gaps = 50/424 (11%)

Query: 1   PNEYVLFHLLRASS-----DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLA 55
           PNE+ L   L+A S     DLG     +Q+H    K G L ++FV +AL+  Y K   + 
Sbjct: 211 PNEFTLATGLKACSLCMALDLG-----KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIE 265

Query: 56  DAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACG 115
            A KMF+ +P+ + V+WN L++GY Q G     L LF  +   ++  + ++ T+ L  C 
Sbjct: 266 LASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCA 325

Query: 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175
              +L+ G  IHS I+K   E    I   L+DMY KCG   DAIGVF  +   DI+ W++
Sbjct: 326 NSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSA 385

Query: 176 VIAASARNGNLELAFGFLH------RLPNPDTIS-------------------------- 203
           +I    + G  E +    H       LPN  TI                           
Sbjct: 386 LITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYG 445

Query: 204 -------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
                   N ++    + G + D   +  SM   +  SWN+ L+G  +       L +F 
Sbjct: 446 FETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFY 505

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
            M  +    + YTF ++L   + L  + +G  +H+ +IK  LD +  V +AL+DMY+KC 
Sbjct: 506 HMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCM 565

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            +E AD  F  L  ++L TW  +IT YA+     K +  F Q++    ++P+  T    L
Sbjct: 566 YLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQ-EGVKPNEFTLAGCL 624

Query: 377 AACS 380
           + CS
Sbjct: 625 SGCS 628



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 184/397 (46%), Gaps = 40/397 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H  I+K     +  +  +L+  Y K    A A  +  ++P   VVSW +LI G V  
Sbjct: 132 KAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAE 191

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G    ++ LF E++   I  + ++  + L AC    +L LG  +H++  K  L   + + 
Sbjct: 192 GFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVG 251

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPN 198
           + L+D+Y KCG +E A  +F  M +++ ++WN ++   A+ G+    L+L    +     
Sbjct: 252 SALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVK 311

Query: 199 PDTISYNEVINGIAQFGDIE-----------------------------------DAIMI 223
            +  +   V+ G A   +++                                   DAI +
Sbjct: 312 CNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGV 371

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
             ++  P+   W++++T    + +  E++ LF  M+  D   ++YT  ++LS       L
Sbjct: 372 FKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNL 431

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
            +G  IH+CV K G +  + V++AL+ MY K G V     ++ S+  ++L++WNA ++G 
Sbjct: 432 QYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGL 491

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
              G   + + +F  +       P+  TF+++L +CS
Sbjct: 492 HDCGMYDRPLTIFYHMLE-EGFIPNMYTFISILGSCS 527



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 144/315 (45%), Gaps = 40/315 (12%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
           ++S L  C    SL +  AIH  IVK  +     +   L+++Y KC     A  V  +M 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHR------LPNPDTISY---------------- 204
           D+D++SW ++I      G    +            +PN  T++                 
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 205 -----------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
                            + +++  A+ G+IE A  +   MP  N  +WN +L GY  R  
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307
           V   L LF  M   DV  +E+T +T+L G A    L  G +IHS +IK G + +  +   
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           L+DMYSKCG    A  +F+++ + ++V W+A+IT   + G   + I+LF  L  + D  P
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLF-HLMRLGDTLP 413

Query: 368 DSVTFLNVLAACSHT 382
           +  T  ++L+A ++T
Sbjct: 414 NQYTICSLLSAATNT 428



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 113/234 (48%), Gaps = 5/234 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+ L   L   S L      QQLH  + KSG +S++FV +AL+  Y K   + +A  +
Sbjct: 615 PNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEAL 674

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +   ++WN++I GY Q+G+  KAL  F  +    I  D  +FT  L+AC   G +
Sbjct: 675 FEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLV 734

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G    +S    + +   V    C++D+ G+ G  ++      +M + ++ + W +V+ 
Sbjct: 735 EEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLG 794

Query: 179 ASARNGNL---ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           AS  + NL   E A   L  L   +  SY  + N  A  G  +D   + S M S
Sbjct: 795 ASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSS 848


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 170/530 (32%), Positives = 280/530 (52%), Gaps = 70/530 (13%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFV---------------------- 62
           LH + +K+  +   F++  L+ FY K +S+  AHK+F                       
Sbjct: 36  LHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVLPVKNTHSWNIIISAYSRSGL 95

Query: 63  ---------EIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER--SEIYADAYSFTSAL 111
                    ++P+P++VS+NSLISG    G  +++LN+F  + +  S +  D ++  S +
Sbjct: 96  FNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLFDEFTLVSLV 155

Query: 112 AACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII 171
            +C  LG+ +L   +H   +   L   ++I N LID YGKC                   
Sbjct: 156 GSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKC------------------- 196

Query: 172 SWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
                       G  +++F    R+P  D +S+  ++   AQ   +EDA  + S M   N
Sbjct: 197 ------------GEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKN 244

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
           + SW +++ G+    R  EALHLF +M+ + +P   +TF+++LS  A L+ +  G  IH 
Sbjct: 245 TVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHG 304

Query: 292 CVIKQG-LD--ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
            +I+   +D   +I + +AL+DMY KCGQ+  A ++F+ +  K++V+WN++ITG+A+NG 
Sbjct: 305 HIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGH 364

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
             + + +FE++    D++P+ VTFL +L+AC HT +  + +    +SM KDYG+ P  +H
Sbjct: 365 GEESLAVFERMIEA-DIRPNHVTFLGLLSACCHTGLVSEGL-RILDSMEKDYGVCPRSDH 422

Query: 409 CCSMIRLMGQKGEVWRAQRMIRELGFGSYGV-VWRALLSASGACSDLDVARISAAEVIKL 467
              MI L+G+   +  A  +I+    GS  V +W ALL A     ++D+AR +A  + +L
Sbjct: 423 YAIMIDLLGRNNRLEEAMGLIKRAPKGSDHVGMWGALLGACRIHGNMDLARRAAEVLFQL 482

Query: 468 EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           E  +   YVM+ N+Y +   WD A  +R  M ERGLRKEA CSWIEV N 
Sbjct: 483 EPGNAARYVMVYNIYAAASRWDEARQVRRLMMERGLRKEAACSWIEVRNT 532



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 145/305 (47%), Gaps = 61/305 (20%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
           ++S ++ C     L+LG  +HS  +K +L     +AN LID Y KC S++ A  VF  + 
Sbjct: 17  YSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVLP 76

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
            K+  SWN +I+A +R+G    A   L ++P P+ +SYN +I+G+   G  ++++ +  +
Sbjct: 77  VKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKT 136

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           M                               Q  +V  DE+T  +++   A L A    
Sbjct: 137 MLK-----------------------------QCSNVLFDEFTLVSLVGSCASLGAPELL 167

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS----------------------- 323
             +H   I  GL+++I++ +AL+D Y KCG+ +I+ S                       
Sbjct: 168 RQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQA 227

Query: 324 --------MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
                   +F  +  KN V+W A+I G+A+NG   + + LFEQ++    + P + TF +V
Sbjct: 228 SRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMRE-EGIPPSAFTFASV 286

Query: 376 LAACS 380
           L+AC+
Sbjct: 287 LSACA 291



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 154/353 (43%), Gaps = 60/353 (16%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +E+ L  L+ + + LG     +Q+H   +  G  SN+ +  AL+  Y K      +  +F
Sbjct: 147 DEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIF 206

Query: 62  VEIPQPSVVSWNS-------------------------------LISGYVQSGKYRKALN 90
             +P+  VVSW S                               LI+G+ Q+G+  +AL+
Sbjct: 207 SRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALH 266

Query: 91  LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER---GVVIANCLID 147
           LF ++    I   A++F S L+AC  L  +  G  IH  I++ +       + I N LID
Sbjct: 267 LFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALID 326

Query: 148 MYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTIS 203
           MY KCG +  A  +F  M +KDI+SWNS+I   A+NG+ E +     R+      P+ ++
Sbjct: 327 MYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVT 386

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPS-----PNSSSWNSILTGYVNRNRVPEALHLFGEM 258
           +  +++     G + + + IL SM       P S  +  ++      NR+ EA+ L    
Sbjct: 387 FLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLI--- 443

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
             K  P          S   G+    WG L+ +C I   +D +   A  L  +
Sbjct: 444 --KRAPKG--------SDHVGM----WGALLGACRIHGNMDLARRAAEVLFQL 482



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 97/196 (49%), Gaps = 18/196 (9%)

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           +S+++S       L  G L+HS  IK  L  +  +A+ L+D YSKC  ++ A  +F  L 
Sbjct: 17  YSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVLP 76

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389
            KN  +WN +I+ Y+R+G   +   L +Q+      +P+ V++ ++++   H    F K 
Sbjct: 77  VKNTHSWNIIISAYSRSGLFNEAHNLLDQMP-----KPNLVSYNSLISGLGHHG--FRKE 129

Query: 390 S-EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE-------LGFGSYGVVW 441
           S   F++M K        E   +++ L+G    +  A  ++R+       +G  S  ++ 
Sbjct: 130 SLNVFKTMLKQCSNVLFDEF--TLVSLVGSCASLG-APELLRQVHGAAIIIGLNSNIIIG 186

Query: 442 RALLSASGACSDLDVA 457
            AL+ A G C + D++
Sbjct: 187 NALIDAYGKCGEPDIS 202


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 171/555 (30%), Positives = 298/555 (53%), Gaps = 41/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+ L  ++   + L      +++H Y++K G+ S+ F + AL+  Y K+  L DA  +
Sbjct: 109 PNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSV 168

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EI +P +VSWN++I+G V    + +AL L  E+ +S +  + ++ +SAL AC  +   
Sbjct: 169 FDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALR 228

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +HS ++K  +     +   LIDMY KC S++DA  VF  M ++D+I+WN+VI+  
Sbjct: 229 ELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGH 288

Query: 181 ARNGNLELA---FGFLHRLP---NPDTIS------------------------------- 203
           ++N   E A   F  +H      N  T+S                               
Sbjct: 289 SQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDN 348

Query: 204 --YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+   + G +EDA  +    P  +   + S++T Y    +  EAL L+ EMQ +
Sbjct: 349 YVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDR 408

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D +  S++L+  A LSA   G  +H  ++K G  + I   ++L++MY+KCG +E A
Sbjct: 409 GIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDA 468

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F  +  + +V+W+AMI G A++G   + ++LF+Q+  V  + P+ +T ++VL AC+H
Sbjct: 469 SCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKV-GVPPNHITLVSVLCACNH 527

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +   +   YF SM   +GI+P  EH   MI L+G+ G++  A  ++ ++ F +  +VW
Sbjct: 528 AGL-VAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVW 586

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL A+    ++D+   +A  ++ LE +    +V+L N+Y S G WD  + +R  M++ 
Sbjct: 587 GALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDG 646

Query: 502 GLRKEAGCSWIEVEN 516
            ++KE G SW+EV++
Sbjct: 647 KVKKEPGMSWLEVKD 661



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 203/418 (48%), Gaps = 40/418 (9%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE+    +L+A +        +Q+H  ++ +GF S+ FV+ +L+  Y K     DA  +F
Sbjct: 9   NEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLF 68

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             IP  SVVSWN+L S YV S  + +A++LF ++  S I  + +S +S +  C  L    
Sbjct: 69  DAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSV 128

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  IH  ++K   +     AN L+DMY K G +EDA  VF E+   DI+SWN++IA   
Sbjct: 129 QGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCV 188

Query: 182 RNGNLELAFGFLHRL------PNPDTISYN------------------------------ 205
            +     A   L  +      PN  T+S                                
Sbjct: 189 LHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSF 248

Query: 206 ---EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
               +I+  ++   ++DA ++   MP  +  +WN++++G+       EA  LF  M ++ 
Sbjct: 249 LGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEG 308

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +  ++ T ST+L  IA L A      IH+  +K G +    V ++L+D Y KCG VE A 
Sbjct: 309 IGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDAT 368

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            +F      +LV + +++T YA++G   + + L+ +++  R ++PDS    ++L AC+
Sbjct: 369 RVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQD-RGIKPDSFVCSSLLNACA 425



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 135/301 (44%), Gaps = 39/301 (12%)

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159
           I  + ++F S L AC     L LG  +H  +V    +    +AN L+ +Y KCG   DA 
Sbjct: 6   IKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDAR 65

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------PNP-------------- 199
            +F  + D+ ++SWN++ +    +     A    H +      PN               
Sbjct: 66  SLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLE 125

Query: 200 -------------------DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                              D  S N +++  A+ G +EDA  +   +  P+  SWN+I+ 
Sbjct: 126 DSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIA 185

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           G V       AL L  EM    +  + +T S+ L   AG++    G  +HS +IK  + +
Sbjct: 186 GCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGS 245

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
              +   L+DMYSKC  ++ A  +F+ +  ++++ WNA+I+G+++N +  +   LF  + 
Sbjct: 246 DSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMH 305

Query: 361 T 361
           T
Sbjct: 306 T 306


>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 163/522 (31%), Positives = 282/522 (54%), Gaps = 10/522 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKI---NSLADA 57
           P+      L R+ + +G     +Q+H  ++  GF SN      L+ +   I    ++A A
Sbjct: 11  PSRQQRSQLWRSCTTIG---TLKQIHASMIVKGFNSNTSALRELI-YASSIAISGTMAYA 66

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
           H++F  I +P    WN++I G  QS     A++L+ ++E   +  D ++F   L AC +L
Sbjct: 67  HQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRL 126

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
             +++G  +H ++ +   E    + N LI  +  CG +  A  +F     +D+++W+++ 
Sbjct: 127 CWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALT 186

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
           A  AR G L +A      +P  D +S+N +I G A+ G++E A  +   +P  +  +WN+
Sbjct: 187 AGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNA 246

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           ++ GYV      +AL +F EM+S     DE T  ++LS    L  L  G  IH C+ + G
Sbjct: 247 MIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMG 306

Query: 298 L-DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
             D S+++ +AL+DMY+KCG +  A  +F+ +  K++ TWN+++ G A +G   K I LF
Sbjct: 307 FRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLF 366

Query: 357 EQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLM 416
            +++ ++ ++PD +TF+ VL ACSH     ++  +YF+ M  +Y I+P + H   M+ L+
Sbjct: 367 TEMRKLK-IRPDEITFVGVLVACSHAG-RVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLL 424

Query: 417 GQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476
           G+ G +  A   I  +      +VWR LL A     ++++ R +  +++K+  D    YV
Sbjct: 425 GRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYV 484

Query: 477 MLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVA 518
           +L N+Y S G WD    +R  M + G+RKEAGCS IE +N A
Sbjct: 485 LLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLIEGDNKA 526


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 167/532 (31%), Positives = 293/532 (55%), Gaps = 40/532 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H  I+ +GF SN+FV TA+M  Y K   + +A+KMF  +    +VSW +L++GY Q+
Sbjct: 165 REIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQN 224

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G  ++AL L ++++ +    D+ +  S L A   + +L++G +IH    +   E  V + 
Sbjct: 225 GHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVT 284

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG-FLHRLPN--- 198
           N L+DMY KCGS   A  VF  M  K ++SWN++I   A+NG  E AF  FL  L     
Sbjct: 285 NALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEV 344

Query: 199 PDTISYNEVINGIAQFGDIE---------DAIMILSSMPSPNS----------------- 232
           P  ++   V+   A  GD+E         D + + S++   NS                 
Sbjct: 345 PTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASI 404

Query: 233 --------SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
                    +WN+++ GY     V EAL+LF  MQS+ + +D +T   +++ +A  S   
Sbjct: 405 FNNLEKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNR 464

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
               IH   ++  +D ++ V++AL+DMY+KCG ++ A  +F  +  ++++TWNAMI GY 
Sbjct: 465 QAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYG 524

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
            +G   + ++LF +++    ++P+ +TFL+V++ACSH+    + +   F+SM +DY ++P
Sbjct: 525 THGVGKETLDLFNEMQK-GAVKPNDITFLSVISACSHSGFVEEGLL-LFKSMQEDYYLEP 582

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
           T++H  +M+ L+G+ G++  A   I+E+       V  A+L A     ++++   +A ++
Sbjct: 583 TMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKL 642

Query: 465 IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            KL+ D    +V+L N+Y S+  WD  + +R  M ++GL K  GCSW+E+ N
Sbjct: 643 FKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRN 694



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/466 (22%), Positives = 213/466 (45%), Gaps = 44/466 (9%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+  +I+K+GF +     T ++  + K  S ++A ++F  +     V ++ ++ GY ++ 
Sbjct: 65  QILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNS 124

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
               AL  F+ +   E+      +   L  CG+   L+ G  IH  I+    E  + +  
Sbjct: 125 SLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMT 184

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNP 199
            ++ +Y KC  +++A  +F  M  KD++SW +++A  A+NG+ + A   + ++      P
Sbjct: 185 AVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKP 244

Query: 200 DTISYNEVINGIAQF-----------------------------------GDIEDAIMIL 224
           D+++   ++  +A                                     G    A ++ 
Sbjct: 245 DSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVF 304

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             M S    SWN+++ G        EA   F +M  +       T   +L   A L  L 
Sbjct: 305 KGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLE 364

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  +H  + K  LD+++ V ++L+ MYSKC +V+IA S+F +L + N VTWNAMI GYA
Sbjct: 365 RGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTN-VTWNAMILGYA 423

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           +NG + + + LF  +++ + ++ D  T + V+ A +  D   ++ +++   +     +  
Sbjct: 424 QNGCVKEALNLFCMMQS-QGIKLDCFTLVGVITALA--DFSVNRQAKWIHGLAVRACMDN 480

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450
            V    +++ +  + G +  A+++  ++    + + W A++   G 
Sbjct: 481 NVFVSTALVDMYAKCGAIKTARKLF-DMMQERHVITWNAMIDGYGT 525



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 206/459 (44%), Gaps = 48/459 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L A +D+      + +H Y  +SGF S V V+ AL+  Y K  S   A  +
Sbjct: 244 PDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLV 303

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   +VVSWN++I G  Q+G+  +A   F+++          +    L AC  LG L
Sbjct: 304 FKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDL 363

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H  + K  L+  V + N LI MY KC  V+ A  +F  + +K  ++WN++I   
Sbjct: 364 ERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGY 422

Query: 181 ARNGNLELAFGFLHRLPNP----DTISYNEVINGIAQF---------------------- 214
           A+NG ++ A      + +     D  +   VI  +A F                      
Sbjct: 423 AQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNV 482

Query: 215 -------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                        G I+ A  +   M   +  +WN+++ GY       E L LF EMQ  
Sbjct: 483 FVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKG 542

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEI 320
            V  ++ TF +++S  +    +  G+L+   + +   L+ ++   SA++D+  + GQ++ 
Sbjct: 543 AVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDD 602

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ-LKTVRDLQPDSVTFLNVLAAC 379
           A +  + +  K  ++    + G  +   + K +EL E+  + +  L PD   +  +LA  
Sbjct: 603 AWNFIQEMPIKPGISVLGAMLGACK---IHKNVELGEKAAQKLFKLDPDEGGYHVLLANI 659

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
             ++  +DKV++   +M +D G+  T    CS + L  +
Sbjct: 660 YASNSMWDKVAKVRTAM-EDKGLHKTPG--CSWVELRNE 695


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 167/532 (31%), Positives = 281/532 (52%), Gaps = 41/532 (7%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QLH + LKS F  +  + TA +  Y K + ++DA K+F  +P P   S+N++I GY +  
Sbjct: 260 QLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQD 319

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           +  KAL +F  L+R+ +  D  S + AL AC  +     G+ +H   VK  L   + +AN
Sbjct: 320 QGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVAN 379

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN----GNLELAFGFLHRLPNP 199
            ++DMYGKCG++ +A  +F +M  +D +SWN++IAA  +N      L L    L     P
Sbjct: 380 TILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEP 439

Query: 200 DTISYNEVINGIA-----------------------------------QFGDIEDAIMIL 224
           D  +Y  V+   A                                   + G + +A  I 
Sbjct: 440 DDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIH 499

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             +    + SWNSI++G+ ++ +   A   F +M    V  D +T++T+L   A ++ + 
Sbjct: 500 DRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIE 559

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  IH+ ++K  L + + +AS L+DMYSKCG ++ +  MF    +++ VTW+AMI  YA
Sbjct: 560 LGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYA 619

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
            +G   + I+LFE+++ + +++P+   F++VL AC+H     DK   YF+ M   YG+ P
Sbjct: 620 YHGHGEQAIKLFEEMQLL-NVKPNHTIFISVLRACAHMGY-VDKGLHYFQIMQSHYGLDP 677

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
            +EH   M+ L+G+  +V  A ++I  + F +  V+WR LLS      +++VA  +   +
Sbjct: 678 HMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSL 737

Query: 465 IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           ++L+      YV+L N+Y + G W   + +R+ M+   L+KE GCSWIEV +
Sbjct: 738 LQLDPQDSSAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGCSWIEVRD 789



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 216/450 (48%), Gaps = 73/450 (16%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRK----------- 50
            ++   H+L+  S+L      +Q H  ++ + F+  ++V+  L+ FY K           
Sbjct: 5   KKFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVF 64

Query: 51  --------------------INSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALN 90
                               I ++  A  +F  +P+  VVSWNSL+S Y+ +G  RK++ 
Sbjct: 65  DRMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIE 124

Query: 91  LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
           +FV +   +I  D  +F+  L AC  +    LG+ +H   ++   E  VV  + L+DMY 
Sbjct: 125 IFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYS 184

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN-----------LELAFGF------- 192
           KC  ++ A  +F EM +++++ W++VIA   +N             L++  G        
Sbjct: 185 KCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYAS 244

Query: 193 ----------------LHRLPNPDTISYNEVI-----NGIAQFGDIEDAIMILSSMPSPN 231
                           LH        +Y+ +I     +  A+   + DA  + +++P+P 
Sbjct: 245 VFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPP 304

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             S+N+I+ GY  +++  +AL +F  +Q   +  DE + S  L+  + +     G+ +H 
Sbjct: 305 RQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHG 364

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
             +K GL  +I VA+ +LDMY KCG +  A ++F  + R++ V+WNA+I  + +N ++ K
Sbjct: 365 LAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVK 424

Query: 352 VIELF-EQLKTVRDLQPDSVTFLNVLAACS 380
            + LF   L++   ++PD  T+ +V+ AC+
Sbjct: 425 TLSLFVSMLRST--MEPDDFTYGSVVKACA 452



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 195/421 (46%), Gaps = 41/421 (9%)

Query: 1   PNEYVLFHL-LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P++Y  F + L+A S +       Q+HC  ++ GF ++V   +AL+  Y K   L  A +
Sbjct: 135 PHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFR 194

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F E+P+ ++V W+++I+GYVQ+ ++ + L LF ++ +  +     ++ S   +C  L +
Sbjct: 195 IFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSA 254

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            +LG  +H   +K       +I    +DMY KC  + DA  VF  + +    S+N++I  
Sbjct: 255 FKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVG 314

Query: 180 SARNGNLELAFGFLHRLPNP----DTISY------------------------------- 204
            AR      A      L       D IS                                
Sbjct: 315 YARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFN 374

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +++   + G + +A  I   M   ++ SWN+I+  +     + + L LF  M  
Sbjct: 375 ICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLR 434

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             +  D++T+ +++   AG  AL +GM IH  ++K G+     V SAL+DMY KCG +  
Sbjct: 435 STMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLME 494

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A+ +   L  K  V+WN++I+G++           F Q+  +  + PD+ T+  VL  C+
Sbjct: 495 AEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEM-GVIPDNFTYATVLDVCA 553

Query: 381 H 381
           +
Sbjct: 554 N 554



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 145/284 (51%), Gaps = 12/284 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +++A +      Y  ++H  I+KSG   + FV +AL+  Y K   L +A K+
Sbjct: 439 PDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKI 498

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
              + + + VSWNS+ISG+    +   A   F ++    +  D +++ + L  C  + ++
Sbjct: 499 HDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATI 558

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IH++I+K +L   V IA+ L+DMY KCG+++D+  +F +   +D ++W+++I A 
Sbjct: 559 ELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAY 618

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
           A +G+ E A      +      P+   +  V+   A  G ++  +     M S     P+
Sbjct: 619 AYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPH 678

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275
              ++ ++      ++V EAL L   ++S     D+  + T+LS
Sbjct: 679 MEHYSCMVDLLGRSDQVNEALKL---IESMHFEADDVIWRTLLS 719



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 12/198 (6%)

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
           P  ++TFS +L   + L AL  G   H+ +I      +I VA+ L+  Y K   +  A  
Sbjct: 3   PTKKFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFK 62

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F  +  +++++WN MI GYA  G++     LF+ +      + D V++ ++L+   H  
Sbjct: 63  VFDRMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMP-----ERDVVSWNSLLSCYLHNG 117

Query: 384 IPFDKVSEYFE----SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +    +  +       +  DY     V   CS I   G   +V     +  ++GF +  V
Sbjct: 118 VNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQV---HCLAIQMGFENDVV 174

Query: 440 VWRALLSASGACSDLDVA 457
              AL+     C  LD A
Sbjct: 175 TGSALVDMYSKCKKLDGA 192


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 166/553 (30%), Positives = 290/553 (52%), Gaps = 41/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      +L A S      + + +H  IL +G  S+  V TAL+  Y K  S  D  ++
Sbjct: 225 PNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQV 284

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++    +++WN++I G  + G + +A  ++ +++R  +  +  ++   L AC    +L
Sbjct: 285 FEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAAL 344

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IHS++ K      + + N LI MY +CGS++DA  VF +M+ KD+ISW ++I   
Sbjct: 345 HWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGL 404

Query: 181 ARNGNLELAFGFLHRLPN----PDTISY-------------------------------- 204
           A++G    A      +      P+ ++Y                                
Sbjct: 405 AKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDA 464

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N ++N  +  G ++DA  +   M   +  ++N+++ GY   N   EAL LF  +Q +
Sbjct: 465 HVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEE 524

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D+ T+  ML+  A   +L W   IH+ V K G  +   V +AL+  Y+KCG    A
Sbjct: 525 GLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDA 584

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  + ++N+++WNA+I G A++G     ++LFE++K +  ++PD VTF+++L+ACSH
Sbjct: 585 SIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMK-MEGVKPDIVTFVSLLSACSH 643

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  ++   YF SM++D+ I PT+EH   M+ L+G+ G++  A+ +I+ + F +   +W
Sbjct: 644 AGL-LEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIW 702

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL A     ++ VA  +A   +KL+ D+  VYV L ++Y + G WD A+ +R  M +R
Sbjct: 703 GALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQR 762

Query: 502 GLRKEAGCSWIEV 514
           G+ KE G SWI+V
Sbjct: 763 GVTKEPGRSWIQV 775



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 215/421 (51%), Gaps = 40/421 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +   L +    G   + +++H   +++G L +V V+  ++  Y K  S+ +A ++
Sbjct: 124 PDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREV 183

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ + SVVSW   I GY   G+   A  +F ++E+  +  +  ++ S L A     +L
Sbjct: 184 FDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAAL 243

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G A+HS+I+    E    +   L+ MY KCGS +D   VF +++++D+I+WN++I   
Sbjct: 244 KWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGL 303

Query: 181 ARNGNLELAFGFLHRLPN----PDTISY-------------------------------- 204
           A  G  E A    +++      P+ I+Y                                
Sbjct: 304 AEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDI 363

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+  ++ G I+DA ++   M   +  SW +++ G        EAL ++ EMQ  
Sbjct: 364 GVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQA 423

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  +  T++++L+  +  +AL WG  IH  V++ GL     V + L++MYS CG V+ A
Sbjct: 424 GVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDA 483

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  + ++++V +NAMI GYA +    + ++LF++L+    L+PD VT++N+L AC++
Sbjct: 484 RQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQE-EGLKPDKVTYINMLNACAN 542

Query: 382 T 382
           +
Sbjct: 543 S 543



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 207/399 (51%), Gaps = 42/399 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP--QPSVVSWNSLISGYV 80
           +Q+H +I++   + + +   AL+  Y +  S+ +A +++ ++   + +V SWN+++ GY+
Sbjct: 43  RQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYI 102

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           Q G   KAL L  ++++  +  D  +  S L++C   G+L+ G  IH + ++  L   V 
Sbjct: 103 QYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVK 162

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-- 198
           +ANC+++MY KCGS+E+A  VF +M  K ++SW   I   A  G  E AF    ++    
Sbjct: 163 VANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEG 222

Query: 199 --PDTISYNEVINGI-----------------------------------AQFGDIEDAI 221
             P+ I+Y  V+N                                     A+ G  +D  
Sbjct: 223 VVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCR 282

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   + + +  +WN+++ G        EA  ++ +MQ + V  ++ T+  +L+     +
Sbjct: 283 QVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSA 342

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL WG  IHS V K G  + I V +AL+ MYS+CG ++ A  +F  + RK++++W AMI 
Sbjct: 343 ALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIG 402

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           G A++G   + + ++++++    ++P+ VT+ ++L ACS
Sbjct: 403 GLAKSGFGAEALTVYQEMQQA-GVEPNRVTYTSILNACS 440



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 155/333 (46%), Gaps = 42/333 (12%)

Query: 88  ALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLID 147
           A+++   L++     ++  +   L  C ++  L  G  +H  I+++         N LI+
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 148 MYGKCGSVEDAIGVFGEM--IDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDT 201
           MY +CGS+E+A  V+ ++  +++ + SWN+++    + G +E A   L ++      PD 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 202 ISY-----------------------------------NEVINGIAQFGDIEDAIMILSS 226
            +                                    N ++N  A+ G IE+A  +   
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           M   +  SW   + GY +  R   A  +F +M+ + V  +  T+ ++L+  +  +AL WG
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG 246

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
             +HS ++  G ++   V +AL+ MY+KCG  +    +F  L  ++L+ WN MI G A  
Sbjct: 247 KAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 306

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           G   +  E++ Q++    + P+ +T++ +L AC
Sbjct: 307 GYWEEASEVYNQMQR-EGVMPNKITYVILLNAC 338


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 169/532 (31%), Positives = 278/532 (52%), Gaps = 41/532 (7%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QLH Y LK+ F  +  V TA +  Y K + + DA K+F   P P+  S N+LI GY +  
Sbjct: 292 QLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQD 351

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           +  +AL +F  L++S +  D  S + AL AC  +     G+ +H   VK  L+  + +AN
Sbjct: 352 QVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVAN 411

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE----LAFGFLHRLPNP 199
            ++DMY KCG++ +A  +F +M  KD +SWN++IAA  +N ++E    L    L     P
Sbjct: 412 TILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEP 471

Query: 200 DTISYNEVINGIA-----------------------------------QFGDIEDAIMIL 224
           D  ++  V+   A                                   + G + +A  I 
Sbjct: 472 DDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIH 531

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             +    + SWNSI++G+ +  +   AL  F  M    V  D +T++T+L   A L+ + 
Sbjct: 532 ERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVE 591

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  IH  ++K  L + + +AS ++DMYSKCG ++ +  MF    +++ VTW+AMI  YA
Sbjct: 592 LGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYA 651

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
            +G     I+LFE+++ +++++P+   F++VL AC+H     DK   YF  M   YG+ P
Sbjct: 652 YHGLGEDAIKLFEEMQ-LQNVKPNHTIFISVLRACAHMGF-VDKGLHYFREMRSHYGLDP 709

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
            +EH   M+ L+G+ G+V  A  +I  + F +  V+WR LL       +++VA  +A  +
Sbjct: 710 QMEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSL 769

Query: 465 IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           ++L+      YV+L N+Y   G W   + +R+FM+   L+KE GCSWI+V +
Sbjct: 770 LQLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVRD 821



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 210/452 (46%), Gaps = 74/452 (16%)

Query: 1   PNEYVLF-HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRK--------- 50
           P + + F H+ +  S+L      +Q H  I  +GF+  VFVS  L+ FY K         
Sbjct: 35  PTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFN 94

Query: 51  ----------------------INSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKA 88
                                 + ++  A  +F  +P+  VVSWNS++S Y+Q+G +RK+
Sbjct: 95  VFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKS 154

Query: 89  LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
           + +F ++   EI  D  +F   L AC  +    LG+ +H   ++   +  VV    L+DM
Sbjct: 155 IEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDM 214

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNL--------------------EL 188
           Y  C  ++ A  +F EM +++ + W++VIA   RN                         
Sbjct: 215 YSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATF 274

Query: 189 AFGF--------------LHRLPNPDTISYNEVI-----NGIAQFGDIEDAIMILSSMPS 229
           A  F              LH         Y+ ++     +  A+   + DA  + ++ P+
Sbjct: 275 ASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPN 334

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
           P   S N+++ GY  +++V EAL +F  +Q   +  DE + S  L+  + +     G+ +
Sbjct: 335 PTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQL 394

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H   +K GLD +I VA+ +LDMY+KCG +  A  +F  +  K+ V+WNA+I  + +N  +
Sbjct: 395 HGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHV 454

Query: 350 TKVIELF-EQLKTVRDLQPDSVTFLNVLAACS 380
            + + LF   L++   ++PD  TF +V+ AC+
Sbjct: 455 EETLALFVSMLRST--MEPDDYTFGSVVKACA 484



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 184/397 (46%), Gaps = 40/397 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+HC  ++ GF S+V   TAL+  Y     L  A  +F E+P+ + V W+++I+GYV++ 
Sbjct: 191 QVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRND 250

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           ++ + L L+  +    +     +F SA  +C  L + +LG  +H+  +K +     ++  
Sbjct: 251 RFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGT 310

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP---- 199
             +DMY KC  + DA  VF    +    S N++I   AR   +  A      L       
Sbjct: 311 ATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDF 370

Query: 200 DTISY-----------------------------------NEVINGIAQFGDIEDAIMIL 224
           D IS                                    N +++  A+ G + +A +I 
Sbjct: 371 DEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIF 430

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             M   ++ SWN+I+  +     V E L LF  M    +  D+YTF +++   AG  AL 
Sbjct: 431 DDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALN 490

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
           +GM +H  VIK G+     V SA++DMY KCG +  A+ +   L  +  V+WN++I+G++
Sbjct: 491 YGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFS 550

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
                   +  F ++  V  + PD+ T+  VL  C++
Sbjct: 551 SEKQGENALSYFSRMLQV-GVIPDNFTYATVLDICAN 586



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 159/337 (47%), Gaps = 47/337 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++Y    +++A +      Y  ++H  ++KSG   + FV +A++  Y K   L +A K+
Sbjct: 471 PDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKI 530

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
              + + + VSWNS+ISG+    +   AL+ F  + +  +  D +++ + L  C  L ++
Sbjct: 531 HERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATV 590

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IH +I+K  L   V IA+ ++DMY KCG+++D+  +F +   +D ++W+++I A 
Sbjct: 591 ELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAY 650

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP----SPNSSSWN 236
           A +G      G                          EDAI +   M      PN + + 
Sbjct: 651 AYHG-----LG--------------------------EDAIKLFEEMQLQNVKPNHTIFI 679

Query: 237 SILTGYVNRNRVPEALHLFGEMQSK---DVPMDEYTFSTMLSGIAGL--SALTWGMLIHS 291
           S+L    +   V + LH F EM+S    D  M+ Y+    L G +G    AL    LI S
Sbjct: 680 SVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALE---LIES 736

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
                  +A  V+   LL +    G VE+A+    SL
Sbjct: 737 ----MPFEADDVIWRTLLGICRLQGNVEVAEKAANSL 769



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 91/214 (42%), Gaps = 16/214 (7%)

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
           P A+H     Q    P  + TFS +    + L A+  G   H+ +   G   ++ V++ L
Sbjct: 22  PYAIHSISSNQMN--PTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCL 79

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           L  Y KC  +  A ++F  + ++++++WN MI GYA  G++     LF+ +   RD    
Sbjct: 80  LQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPE-RD---- 134

Query: 369 SVTFLNVLAACSHTDIPFDKVSEYFESM-----TKDYGIKPTVEHCCSMIRLMGQKGEVW 423
            V   N + +C   +    K  E F  M       DY     V   C+ I   G   +V 
Sbjct: 135 -VVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQV- 192

Query: 424 RAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
               +  ++GF S  V   AL+     C  LD A
Sbjct: 193 --HCLAIQMGFDSDVVTGTALVDMYSTCKKLDHA 224


>gi|357116134|ref|XP_003559839.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Brachypodium distachyon]
          Length = 601

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 173/519 (33%), Positives = 277/519 (53%), Gaps = 38/519 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E     LL++   +G  +  +Q+H ++L +G  S V++  +L+  Y        A  M
Sbjct: 118 PDEKTFLSLLKS---VGCASVGKQVHAHVLVNGLHSRVYLRNSLIKMYLDAGDAETAEAM 174

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P P VVS N ++SGYV+ G    AL LF ++   EI  D Y+  + L+ CG+L + 
Sbjct: 175 FQSVPVPDVVSCNIMLSGYVKGGCVVNALQLFRDMASREIGVDQYAAVALLSCCGRLKNA 234

Query: 121 QLGMAIHSKIVKYS--LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            LG ++H  +V+     +RG++++N L+DMY KCG +  A+ VFGE  +KD ISWN++IA
Sbjct: 235 LLGRSVHGVVVRRMDIKDRGLILSNALLDMYAKCGEMNTAMRVFGEAKEKDDISWNTMIA 294

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
             A +G L+LA  F    P  D I                               SWN++
Sbjct: 295 GFANDGMLDLASKFFFDAPCRDLI-------------------------------SWNTL 323

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           L GY         + LF +M S  V  D+ T  T++S      AL  G  +H  V+K+  
Sbjct: 324 LAGYGRCREFAAVMELFNDMLSSRVRPDKVTAVTLISAAVSKGALNLGKSVHGWVLKEHG 383

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
                +AS L+DMY KCG V++A ++F     K++  W AMI+G A +G  T+ ++LF  
Sbjct: 384 TQDAFLASTLVDMYCKCGNVKLAYAVFEKALDKDVTLWTAMISGLAFHGHGTEALDLFWN 443

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           ++    + P+ VT + VL+ACSH  +  D+  E F +M K + I+P VEH   M+ L+ +
Sbjct: 444 MQN-EGVAPNGVTLVTVLSACSHAGL-LDEGCEIFYTMQKRFNIEPRVEHFGCMVDLLAR 501

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G +  A  + R +       +W ++LS S +C + +VA I++ E+++LE   +  YV+L
Sbjct: 502 SGRLSDAVGLARMMPMKPSRSIWGSILSVSSSCQNTEVAEIASKELLRLEPTEEGGYVLL 561

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
            NLY + G W+ ++ +R  M  RG+RK AG S + V++V
Sbjct: 562 SNLYAAGGQWNYSNKVRENMEMRGVRKSAGASGLAVDDV 600


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  297 bits (760), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 172/555 (30%), Positives = 293/555 (52%), Gaps = 41/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  Y   +LL+   D       +++H  ++ SGF  N+F  T ++  Y K   + DA+ M
Sbjct: 28  PVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNM 87

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+  +V WN++ISGY Q+G  + AL L + +       D+ +  S L A      L
Sbjct: 88  FDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLL 147

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           ++GMA+H  +++   E  V ++  L+DMY KCGSV  A  +F  M  + ++SWNS+I   
Sbjct: 148 RIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGY 207

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIE---------DAIMILSSM 227
            ++G+ E A     ++ +    P  ++    ++  A  GD+E         D + + S +
Sbjct: 208 VQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDV 267

Query: 228 PSPNS--------------------------SSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              NS                           SWN+++ GY     V EAL+ F EMQS+
Sbjct: 268 SVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSR 327

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           ++  D +T  +++  +A LS       IH  VI++ LD ++ V +AL+DMY+KCG +  A
Sbjct: 328 NIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTA 387

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  ++++TWNAMI GY  +G     +ELF+++K    ++P+ +TFL  L+ACSH
Sbjct: 388 RKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKK-GTIKPNDITFLCALSACSH 446

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           + +  + +  +FESM KDYGI+PT++H  +M+ L+G+ G + +A   I+++       V+
Sbjct: 447 SGLVEEGLC-FFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVY 505

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            A+L A     ++D+   +A E+ KL  D    +V+L N+Y +   W   + +R  M + 
Sbjct: 506 GAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKS 565

Query: 502 GLRKEAGCSWIEVEN 516
           GL+K  GCS +E+ N
Sbjct: 566 GLQKTPGCSLVEIGN 580



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/415 (24%), Positives = 195/415 (46%), Gaps = 43/415 (10%)

Query: 75  LISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS 134
           ++ GY +S     AL+ F  ++   +    Y+FT  L  CG    L+ G  IH  ++   
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 135 LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH 194
               +     +++MY KC  + DA  +F  M ++D++ WN++I+  A+NG  ++A   + 
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 195 RLPN----PDTISYNEVINGIA-----------------------------------QFG 215
           R+      PD+I+   ++  +A                                   + G
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275
            +  A +I   M      SWNS++ GYV       A+ +F +M  + V     T    L 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335
             A L  L  G  +H  V +  LD+ + V ++L+ MYSKC +V+IA  +F++L  K LV+
Sbjct: 241 ACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVS 300

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFES 395
           WNAMI GYA+NG + + +  F ++++ R+++PDS T ++V+ A +   IP  + +++   
Sbjct: 301 WNAMILGYAQNGCVNEALNAFCEMQS-RNIKPDSFTMVSVIPALAELSIP--RQAKWIHG 357

Query: 396 MTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450
           +     +   V    +++ +  + G +  A+++  ++    + + W A++   G 
Sbjct: 358 LVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLF-DMMNARHVITWNAMIDGYGT 411


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 174/555 (31%), Positives = 298/555 (53%), Gaps = 41/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+ L  ++ A + L   +  + +H Y++K G+  + F + AL+  Y K+  LADA  +
Sbjct: 256 PNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISV 315

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +I QP +VSWN++I+G V    + +AL L  +++RS I  + ++ +SAL AC  +G  
Sbjct: 316 FEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLK 375

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA- 179
           +LG  +HS ++K  +E  + ++  L+DMY KC  +EDA   F  + +KD+I+WN++I+  
Sbjct: 376 ELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGY 435

Query: 180 -------SARNGNLEL---AFGF-----------------------LHRLP-----NPDT 201
                   A +  +E+     GF                       +H L      + D 
Sbjct: 436 SQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDI 495

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+   +   +EDA  I       +  S+ S++T Y    +  EAL LF EMQ  
Sbjct: 496 YVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDM 555

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           ++  D +  S++L+  A LSA   G  +H  ++K G    I   ++L++MY+KCG ++ A
Sbjct: 556 ELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDA 615

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F  L  + +V+W+AMI G A++G   + ++LF Q+     + P+ +T ++VL AC+H
Sbjct: 616 GRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLK-EGVSPNHITLVSVLGACNH 674

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +   +   YFESM + +G KP  EH   MI L+G+ G++  A  ++ ++ F +   VW
Sbjct: 675 AGL-VTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVW 733

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL A+    D+++ R +A  +  LE +    +V+L N+Y S G W+  + +R  MR+ 
Sbjct: 734 GALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDS 793

Query: 502 GLRKEAGCSWIEVEN 516
            ++KE G SWIEV++
Sbjct: 794 KVKKEPGMSWIEVKD 808



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 141/484 (29%), Positives = 238/484 (49%), Gaps = 45/484 (9%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE+    +L+A S +      +Q+H  ++ SGF  +VFV+  L+  Y K +   D+ ++F
Sbjct: 156 NEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLF 215

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            EIP+ +VVSWN+L S YVQ     +A+ LF E+  S I  + +S +S + AC  L    
Sbjct: 216 DEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSS 275

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  IH  ++K   +     AN L+DMY K G + DAI VF ++   DI+SWN+VIA   
Sbjct: 276 RGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCV 335

Query: 182 RNGNLELAFGFLHRLPN----PDTISYNEVIN-----GIAQFGD---------------- 216
            + + E A   L ++      P+  + +  +      G+ + G                 
Sbjct: 336 LHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLF 395

Query: 217 --------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                         +EDA M  + +P  +  +WN+I++GY       EAL LF EM  + 
Sbjct: 396 VSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEG 455

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +  ++ T ST+L   AGL  +     +H   +K G  + I V ++L+D Y KC  VE A+
Sbjct: 456 IGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAE 515

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F      +LV++ +MIT YA+ G   + ++LF +++ + +L+PD     ++L AC++ 
Sbjct: 516 RIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDM-ELKPDRFVCSSLLNACANL 574

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV-W 441
              F++  +    + K YG    +    S++ +  + G +  A R   EL     G+V W
Sbjct: 575 S-AFEQGKQLHVHILK-YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSEL--TERGIVSW 630

Query: 442 RALL 445
            A++
Sbjct: 631 SAMI 634



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 210/451 (46%), Gaps = 42/451 (9%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H +I KSG   +  +   L+  Y K  +   A K+  E  +P +VSW++LISGY Q+G
Sbjct: 77  QIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNG 136

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
               AL  F E+    +  + ++F+S L AC  +  L++G  +H  +V    E  V +AN
Sbjct: 137 LGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVAN 196

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------P 197
            L+ MY KC    D+  +F E+ +++++SWN++ +   +      A G  + +      P
Sbjct: 197 TLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKP 256

Query: 198 NP---------------------------------DTISYNEVINGIAQFGDIEDAIMIL 224
           N                                  D  S N +++  A+ GD+ DAI + 
Sbjct: 257 NEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVF 316

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             +  P+  SWN+++ G V      +AL L G+M+   +  + +T S+ L   AG+    
Sbjct: 317 EKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKE 376

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  +HS ++K  +++ + V+  L+DMYSKC  +E A   F  L  K+L+ WNA+I+GY+
Sbjct: 377 LGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYS 436

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           +  +  + + LF ++     +  +  T   +L + +   +    V      ++   G   
Sbjct: 437 QYWEDMEALSLFVEMHK-EGIGFNQTTLSTILKSTAGLQVV--HVCRQVHGLSVKSGFHS 493

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
            +    S+I   G+   V  A+R+  E   G
Sbjct: 494 DIYVVNSLIDSYGKCSHVEDAERIFEECTIG 524



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 162/355 (45%), Gaps = 46/355 (12%)

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
           P P ++     +  + Q  +    LNL   +++      + S++  L+ C    SL+ G+
Sbjct: 23  PAPKLIQ---TVPQFSQDPQTTAILNL---IDKGNFTPTSVSYSKLLSQCCTTKSLRPGL 76

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN- 183
            IH+ I K  L     I N LI++Y KC +   A  +  E  + D++SW+++I+  A+N 
Sbjct: 77  QIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNG 136

Query: 184 --GNLELAFGFLHRLP------------------------------------NPDTISYN 205
             G   +AF  +H L                                       D    N
Sbjct: 137 LGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVAN 196

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
            ++   A+  +  D+  +   +P  N  SWN++ + YV  +   EA+ LF EM    +  
Sbjct: 197 TLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKP 256

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           +E++ S+M++   GL   + G +IH  +IK G D     A+AL+DMY+K G +  A S+F
Sbjct: 257 NEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVF 316

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             + + ++V+WNA+I G   +    + +EL  Q+K    + P+  T  + L AC+
Sbjct: 317 EKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKR-SGICPNIFTLSSALKACA 370


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 164/526 (31%), Positives = 275/526 (52%), Gaps = 34/526 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            Q+   I+ +GF  N +++  L+     +  +  A ++F +IP P++  WNS+  GY QS
Sbjct: 118 HQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQS 177

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
             YR+ + LF +++  +I  + ++F   L +CG++ +L  G  +H  ++K        + 
Sbjct: 178 ESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVG 237

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA--------SARN----------- 183
             LIDMY   G+V DA  +F EM ++++++W S+I          SAR            
Sbjct: 238 TTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVV 297

Query: 184 ------------GNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
                       G++  A      +PN D + +N V+ G A  G++E    +   MP  N
Sbjct: 298 LWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERN 357

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSK-DVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
             SWN+++ GY +     E L  F  M S+ DVP ++ T  T+LS  A L AL  G  +H
Sbjct: 358 IFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVH 417

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
                 GL  ++ V +AL+DMY+KCG +E A S+FR +  K+L++WN +I G A +    
Sbjct: 418 VYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGA 477

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
             + LF Q+K     +PD +TF+ +L AC+H  +  D  + YF+SM  DY I P +EH  
Sbjct: 478 DALNLFFQMKNAGQ-KPDGITFIGILCACTHMGLVEDGFA-YFQSMADDYLIMPQIEHYG 535

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            M+ ++ + G + +A   +R++   + GV+W  LL A     ++++A ++   +I+LE  
Sbjct: 536 CMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPK 595

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +   YVML N+Y   G W+  + ++  MR+ G +K  GCS IEV +
Sbjct: 596 NPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVND 641



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 2/198 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+  L  +L A + LG     + +H Y   SG   NV+V  ALM  Y K   + +A  +
Sbjct: 392 PNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISV 451

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    ++SWN+LI G     +   ALNLF +++ +    D  +F   L AC  +G +
Sbjct: 452 FRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLV 511

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G A   S    Y +   +    C++DM  + G +E A     +M ++ D + W  ++ 
Sbjct: 512 EDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLG 571

Query: 179 ASARNGNLELAFGFLHRL 196
           A     N+ELA   L RL
Sbjct: 572 ACRIYKNVELAELALQRL 589


>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
 gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
          Length = 546

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 157/500 (31%), Positives = 280/500 (56%), Gaps = 6/500 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALM--GFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H  ++  GF SN      L+  G      ++  AH++F +I +P +  WN+++ G  
Sbjct: 30  KQIHATLIIKGFNSNRAALRELIFAGAMTISGAINYAHQVFAQITEPDIFMWNTMMRGSS 89

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           QS    K + L+ ++E   +  D ++F+  L  C +L   + G  +H K++KY  E    
Sbjct: 90  QSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNSF 149

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           + N LI  +  CG +  A  +F ++ ++ ++SW+++ A  AR G L +A      +P  D
Sbjct: 150 VRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQIFDEMPVKD 209

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +S+N +I G  + G++E+A  +    P  +  +WN+++ GYV R    +AL +F EM++
Sbjct: 210 LVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRN 269

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL--DASIVVASALLDMYSKCGQV 318
                DE T  ++LS  A L  L  G  +H C I +    D S+++ +AL+DMY+KCG +
Sbjct: 270 VGECPDEVTMLSLLSACADLGDLQVGRKLH-CSISEMTRGDLSVLLGNALVDMYAKCGSI 328

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           EIA  +F+ +  K++ TWN++I G A +G   + I+LF +++ +++++P+ +TF+ V+ A
Sbjct: 329 EIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNEITFVGVIVA 388

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH     ++   YF+ M + Y I+P + H   M+ L+G+ G +  A  +I ++      
Sbjct: 389 CSHAG-NVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGLLSEAFELIAKMEIEPNA 447

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
           ++WR LL A     ++++ R++   ++KL  D    YV+L N+Y S G WD A  +R  M
Sbjct: 448 IIWRTLLGACRVHGNVELGRLANERLLKLRRDESGDYVLLSNIYASAGEWDGAEEVRKLM 507

Query: 499 RERGLRKEAGCSWIEVENVA 518
            + G+RKEAG S IE ++ A
Sbjct: 508 DDGGVRKEAGRSLIEADDRA 527



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/437 (21%), Positives = 168/437 (38%), Gaps = 125/437 (28%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    LL+  + L W      +H  +LK GF  N FV   L+ F+     L  A  +
Sbjct: 111 PDKFTFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSI 170

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P+ SVVSW++L +GY + G+   A  +F E+   ++                    
Sbjct: 171 FYDLPERSVVSWSALTAGYARRGELGVARQIFDEMPVKDL-------------------- 210

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
                              V  N +I  Y K G +E+A  +F E  +KD+++WN++IA  
Sbjct: 211 -------------------VSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGY 251

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGD-------------------- 216
              G    A      + N    PD ++   +++  A  GD                    
Sbjct: 252 VLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLS 311

Query: 217 ----------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                           IE A+ +   M   + ++WNS++ G        E++ LF EMQ+
Sbjct: 312 VLLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQA 371

Query: 261 -KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            K++  +E TF                               ++VA       S  G VE
Sbjct: 372 LKNIKPNEITF-----------------------------VGVIVAC------SHAGNVE 396

Query: 320 IADSMFRSLCRK-----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
                F+ +  +     N++    M+    R G L++  EL  ++    +++P+++ +  
Sbjct: 397 EGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGLLSEAFELIAKM----EIEPNAIIWRT 452

Query: 375 VLAACS-HTDIPFDKVS 390
           +L AC  H ++   +++
Sbjct: 453 LLGACRVHGNVELGRLA 469


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 171/547 (31%), Positives = 281/547 (51%), Gaps = 41/547 (7%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           L R+ + L      ++LH + LKS F S++ V TA +  Y K   +ADA K+   +P+ S
Sbjct: 288 LFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCS 347

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           + S+N++I GY +S +  +AL  F  L ++ +  D  + + AL AC  +     G  +H 
Sbjct: 348 LQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHG 407

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
             VK      + +AN ++DMYGKC ++ +A  +F  M  +D +SWN++IAA  +NGN E 
Sbjct: 408 LAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEE 467

Query: 189 AFG----FLHRLPNPDTISYNEVINGIA-------------------------------- 212
                   +H    PD  +Y  V+   A                                
Sbjct: 468 TLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVD 527

Query: 213 ---QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
              + G IE A  I          SWN+I++G+    +  +A   F  M    V  D +T
Sbjct: 528 MYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFT 587

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           ++ +L   A L+ +  G  IH+ +IKQ L + + + S L+DMYSKCG ++ +  MF    
Sbjct: 588 YAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAP 647

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389
            ++ VTWNAM+ GYA +G   + ++LFE ++ V +++P+  TF++VL AC+H  +  DK 
Sbjct: 648 NRDFVTWNAMLCGYAHHGLGEEALKLFESMQLV-NVKPNHATFVSVLRACAHMGL-VDKG 705

Query: 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
             YF+ M  +YG+ P  EH   M+ ++G+ G +  A  +++++ F +  V+WR LLS   
Sbjct: 706 LHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCK 765

Query: 450 ACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGC 509
              +++VA  +   +++L+       V+L N+Y   G W   S MR  MR   L+KE GC
Sbjct: 766 IHGNVEVAEKATRALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGC 825

Query: 510 SWIEVEN 516
           SWIE+++
Sbjct: 826 SWIELKD 832



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 147/545 (26%), Positives = 248/545 (45%), Gaps = 83/545 (15%)

Query: 27  CYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYR 86
           C +    +L +V    +++  Y     +  A K F E+P+  VVSWNS+ISG++Q+G+ R
Sbjct: 104 CKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECR 163

Query: 87  KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
           K++++F+E+ R  +  D  S    L ACG L    +G+ +H  +VK+  +  VV  + L+
Sbjct: 164 KSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALL 223

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LEL-------------- 188
            MY KC  ++D++ VF E+ +K+ +SW+++IA   +N      LEL              
Sbjct: 224 GMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQS 283

Query: 189 ----------AFGFL--------HRLPNP---DTISYNEVINGIAQFGDIEDAIMILSSM 227
                     A   L        H L +    D I     ++  A+ G + DA  +LSSM
Sbjct: 284 IYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSM 343

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
           P  +  S+N+I+ GY   +R  +AL  F  +    +  DE T S  L+  A +     G 
Sbjct: 344 PKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGR 403

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
            +H   +K    ++I VA+A+LDMY KC  +  A  +F  + R++ V+WNA+I    +NG
Sbjct: 404 QVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNG 463

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS-----------HTDIPFDKVSEYFESM 396
           +  + +  F  +   R ++PD  T+ +VL AC+           HT I   K    F+S 
Sbjct: 464 NEEETLAHFASMIHSR-MEPDDFTYGSVLKACAGRQALNTGMEIHTRII--KSGMGFDSF 520

Query: 397 TKDYGIKPTVEHC-CSMIR-------------------------LMGQKGEVWRAQRMIR 430
               G      +C C MI                          L+ Q  +  +    + 
Sbjct: 521 V---GAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRML 577

Query: 431 ELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD-YVYVMLCNLYTSHGNWD 489
           E+G       + A+L      + + + +   A++IK E  SD Y+   L ++Y+  GN  
Sbjct: 578 EMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQ 637

Query: 490 VASVM 494
            + +M
Sbjct: 638 DSQLM 642



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/468 (25%), Positives = 216/468 (46%), Gaps = 57/468 (12%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H  ++K GF  +V   +AL+G Y K   L D+  +F E+P+ + VSW+++I+G VQ+ 
Sbjct: 202 QVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQND 261

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           +  + L LF E++   +      + S   +C  L +L+LG  +HS  +K +    +++  
Sbjct: 262 RNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGT 321

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN-----------LELAFGF 192
             +DMY KCG + DA  V   M    + S+N++I   AR+             L+   GF
Sbjct: 322 ATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGF 381

Query: 193 LHRLPNPDTISYNEVINGIAQF-GDIE--------------------DAIM--------- 222
                  D I+ +  +N  A   GD+E                    +AI+         
Sbjct: 382 -------DEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKAL 434

Query: 223 -----ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277
                +   M   ++ SWN+I+          E L  F  M    +  D++T+ ++L   
Sbjct: 435 AEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKAC 494

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
           AG  AL  GM IH+ +IK G+     V +AL+DMY KCG +E AD +     +K +V+WN
Sbjct: 495 AGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWN 554

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397
           A+I+G++         + F ++  +  + PD+ T+  VL  C+  ++    + +   +  
Sbjct: 555 AIISGFSLLQQSEDAHKFFSRMLEM-GVNPDNFTYAAVLDTCA--NLATVGLGKQIHAQI 611

Query: 398 KDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
               ++  V  C +++ +  + G +  +Q M  +     + V W A+L
Sbjct: 612 IKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDF-VTWNAML 658



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 177/381 (46%), Gaps = 41/381 (10%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +E  L   L A + +  D   +Q+H   +KS  +SN+ V+ A++  Y K  +LA+A  +F
Sbjct: 382 DEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLF 441

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             + +   VSWN++I+   Q+G   + L  F  +  S +  D +++ S L AC    +L 
Sbjct: 442 DMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALN 501

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            GM IH++I+K  +     +   L+DMY KCG +E A  +      K ++SWN++I+  +
Sbjct: 502 TGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFS 561

Query: 182 RNGNLELAFGFLHRL----PNPDTISYNEVINGIAQF----------------------- 214
                E A  F  R+     NPD  +Y  V++  A                         
Sbjct: 562 LLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVY 621

Query: 215 ------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                       G+++D+ ++    P+ +  +WN++L GY +     EAL LF  MQ  +
Sbjct: 622 ICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVN 681

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIA 321
           V  +  TF ++L   A +  +  G+     ++ + GLD      S ++D+  + G+++ A
Sbjct: 682 VKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEA 741

Query: 322 DSMFRSLC-RKNLVTWNAMIT 341
            ++ + +    + V W  +++
Sbjct: 742 LNLVQKMPFEADAVIWRNLLS 762



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 131/266 (49%), Gaps = 31/266 (11%)

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           +++  A   +F+     C +  SL  G   H++++    E    ++NCL+ MY KC  ++
Sbjct: 42  QTQPPAKIRTFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLD 101

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
            A  VF +M  +D++S+NS+I+  A  G +++A  F + +P  D +S+N VI+G  Q G+
Sbjct: 102 YACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGE 161

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
              +I                                +F EM    V  D  + + +L  
Sbjct: 162 CRKSI-------------------------------DVFLEMGRCGVGFDRASLAVVLKA 190

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
              L     G+ +H  V+K G D  +V  SALL MY+KC +++ + S+F  L  KN V+W
Sbjct: 191 CGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSW 250

Query: 337 NAMITGYARNGDLTKVIELFEQLKTV 362
           +AMI G  +N    + +ELF++++ V
Sbjct: 251 SAMIAGCVQNDRNVEGLELFKEMQGV 276



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 101/191 (52%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    +L   ++L      +Q+H  I+K    S+V++ + L+  Y K  ++ D+  M
Sbjct: 583 PDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLM 642

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F + P    V+WN+++ GY   G   +AL LF  ++   +  +  +F S L AC  +G +
Sbjct: 643 FEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLV 702

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G+     ++ +Y L+      +C++D+ G+ G +++A+ +  +M  + D + W ++++
Sbjct: 703 DKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLS 762

Query: 179 ASARNGNLELA 189
               +GN+E+A
Sbjct: 763 VCKIHGNVEVA 773


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 173/533 (32%), Positives = 276/533 (51%), Gaps = 44/533 (8%)

Query: 26  HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKY 85
           HC  +KSG  ++++ +  ++  Y K   +  A KMF E  Q   VSWN++I+G+V  G +
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
             AL     ++R     D YSF S L     +G +++G  +HS +VK   E  V   + L
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSAL 141

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL------------ 193
           +DMY KC  VEDA  VF  +  ++ ++WN++I+  A+ G+   AF  L            
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDD 201

Query: 194 ---------------HRLPN------------PDTISYNEVINGIAQFGDIEDAIMILSS 226
                          H+L               DT   N +I   ++ G IEDA  +   
Sbjct: 202 GTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDG 261

Query: 227 MPSP---NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
                  +  SWNSILTG+       +AL  F  M+S+ V +D Y FS +L   + L+ L
Sbjct: 262 AIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATL 321

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H  V+K G + +  VAS+L+ MYSKCG +E A   F +  + + + WN++I GY
Sbjct: 322 QLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGY 381

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A++G     ++LF  +K  R ++ D +TF+ VL ACSH  +  +  S + +SM  DYGI 
Sbjct: 382 AQHGRGKIALDLFFLMKD-RRVKLDHITFVAVLTACSHIGLVEEGWS-FLKSMESDYGIP 439

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           P +EH   MI L+G+ G +  A+ +I  + F    +VW+ LL A   C D+++A   A+ 
Sbjct: 440 PRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASH 499

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +++LE +    YV+L +++     W+  + ++  M+ERG++K  G SWIEV+N
Sbjct: 500 LLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKN 552



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/449 (26%), Positives = 202/449 (44%), Gaps = 58/449 (12%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
           Y    +L+  + +G+    QQ+H  ++K G+  NVF  +AL+  Y K   + DA ++F  
Sbjct: 101 YSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKS 160

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLF--VELERSEIYADAYSFTSALAACGQLGSLQ 121
           I   + V+WN+LISGY Q G    A  L   +ELE  EI  D  +F   L         +
Sbjct: 161 INIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEI--DDGTFAPLLTLLDDPDLHK 218

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG---EMIDKDIISWNSVIA 178
           L   +H+KIVK+ L     + N +I  Y +CGS+EDA  VF    E  D D +SWNS++ 
Sbjct: 219 LTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNSILT 278

Query: 179 ASARNGNLELAFGFLHRLPN---------------------------------------P 199
             +++G  E A  F   + +                                       P
Sbjct: 279 GFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEP 338

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           +    + +I   ++ G IEDA     + P  +S +WNS++ GY    R   AL LF  M+
Sbjct: 339 NGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMK 398

Query: 260 SKDVPMDEYTFSTMLSGIA--GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
            + V +D  TF  +L+  +  GL    W  L  S     G+   +   + ++D+  + G+
Sbjct: 399 DRRVKLDHITFVAVLTACSHIGLVEEGWSFL-KSMESDYGIPPRMEHYACMIDLLGRAGR 457

Query: 318 VEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKT-VRDLQPDS-VTFLN 374
           ++ A ++  ++    + + W  ++      GD    IEL  Q+ + + +L+P+   T++ 
Sbjct: 458 LDEAKALIEAMPFEPDAMVWKTLLGACRTCGD----IELASQVASHLLELEPEEHCTYVL 513

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           + +   H     +K S   + + K+ G+K
Sbjct: 514 LSSMFGHLRRWNEKAS--IKRLMKERGVK 540



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 104/190 (54%), Gaps = 2/190 (1%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + Y    +LR+ SDL      QQ+H  +LKSGF  N FV+++L+  Y K   + DA K F
Sbjct: 304 DHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSF 363

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
              P+ S ++WNSLI GY Q G+ + AL+LF  ++   +  D  +F + L AC  +G ++
Sbjct: 364 DATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVE 423

Query: 122 LGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
            G + + S    Y +   +    C+ID+ G+ G +++A  +   M  + D + W +++ A
Sbjct: 424 EGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGA 483

Query: 180 SARNGNLELA 189
               G++ELA
Sbjct: 484 CRTCGDIELA 493



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 8/182 (4%)

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
           +  +AL    + H   IK G  ASI  A+ ++  Y+KCG++ IA  MF    +++ V+WN
Sbjct: 10  SSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWN 69

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL--AACSHTDIPFDKVSEYFES 395
            MI G+   G+    +E  + +K       D  +F ++L   AC    + + +V +   S
Sbjct: 70  TMIAGFVNLGNFETALEFLKSMKRY-GFAVDGYSFGSILKGVAC----VGYVEVGQQVHS 124

Query: 396 MTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLD 455
           M    G +  V    +++ +  +   V  A  + + +   +  V W AL+S      D  
Sbjct: 125 MMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRN-SVTWNALISGYAQVGDRG 183

Query: 456 VA 457
            A
Sbjct: 184 TA 185


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 161/515 (31%), Positives = 284/515 (55%), Gaps = 34/515 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    LL   ++   D   +Q+H +++++    N+ V T L+  Y +   L  A ++
Sbjct: 477 PDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEI 536

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + + +  SWNS+I GY Q+G+ ++AL LF +++ + I  D +S +S L++C  L   
Sbjct: 537 FNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDS 596

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           Q G  +H+ IV+ ++E   ++   L+DMY KCGS++ A  V+ + I KD+I  N +++A 
Sbjct: 597 QKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAF 656

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
             +G                                  DA  +   M   N++ WNSIL 
Sbjct: 657 VNSGR-------------------------------ANDAKNLFDQMEQRNTALWNSILA 685

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LD 299
           GY N+    E+ + F EM   D+  D  T  T+++  + L AL  G  +HS +IK+G ++
Sbjct: 686 GYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVN 745

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            S+V+ +AL+DMYSKCG +  A ++F ++  KN+V+WNAMI+GY+++G   + + L+E++
Sbjct: 746 CSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEM 805

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
              + + P+ VTFL +L+ACSHT +  ++    F SM +DY I+   EH   M+ L+G+ 
Sbjct: 806 PK-KGMYPNEVTFLAILSACSHTGL-VEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRA 863

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G +  A+  + ++        W ALL A     D+D+ R++A  + +L+  +   YV++ 
Sbjct: 864 GRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMS 923

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           N+Y + G W     +R  M+ +G++K+ G SWIE+
Sbjct: 924 NIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEI 958



 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 210/397 (52%), Gaps = 41/397 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QL   ++K+G   N+FV  AL+  Y +   + DA     EI   SVV+WN++I+GYV+ 
Sbjct: 195 RQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKI 254

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
             + +A  +F  + +  +  D ++F SAL  CG L S   G  +HSK++    +    + 
Sbjct: 255 LSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVG 314

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNL---------------- 186
           N LIDMY KC   E  + VF EM +++ ++WNS+I+A A+ G+                 
Sbjct: 315 NALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYK 374

Query: 187 -----------------------ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMI 223
                                  EL    +  L N D I  + +++  ++ G +E+A  +
Sbjct: 375 SNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQV 434

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD-VPMDEYTFSTMLSGIAGLSA 282
             S+   N  S+N++L GYV   +  EAL L+ +MQS+D +  D++TF+T+L+  A    
Sbjct: 435 FRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRN 494

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
              G  IH+ +I+  +  +I+V + L+ MYS+CG++  A  +F  +  +N  +WN+MI G
Sbjct: 495 DNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEG 554

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           Y +NG+  + + LF+Q++ +  ++PD  +  ++L++C
Sbjct: 555 YQQNGETQEALRLFKQMQ-LNGIKPDCFSLSSMLSSC 590



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 196/401 (48%), Gaps = 42/401 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLAD---AHKMFVEIPQPSVVSWNSLISGY 79
           + +H  ++ +G+  + ++ T ++  Y +   L D   A K+F E+P+ ++ +WN++I  Y
Sbjct: 91  KSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAY 150

Query: 80  VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
            +   Y + L L+  +  S  ++D ++F S + AC  +  +     + S +VK  L   +
Sbjct: 151 ARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNL 210

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN- 198
            +   L+D Y + G ++DA+    E+    +++WN+VIA   +  + E A+G   R+   
Sbjct: 211 FVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKI 270

Query: 199 ---PDTISY-----------------------------------NEVINGIAQFGDIEDA 220
              PD  ++                                   N +I+  A+  D E  
Sbjct: 271 GVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESC 330

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
           + +   M   N  +WNSI++         +AL LF  MQ      + +   ++L   AGL
Sbjct: 331 LKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGL 390

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           + +  G  +H  +++  L++ I++ SAL+DMYSKCG VE A  +FRSL  +N V++NA++
Sbjct: 391 ADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALL 450

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            GY + G   + +EL+  +++   +QPD  TF  +L  C++
Sbjct: 451 AGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCAN 491



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 128/548 (23%), Positives = 252/548 (45%), Gaps = 56/548 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +     LR    L      +Q+H  ++  GF  + FV  AL+  Y K +      K+
Sbjct: 274 PDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKV 333

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+ + + V+WNS+IS   Q G +  AL LF+ ++ S   ++ ++  S L A   L  +
Sbjct: 334 FDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADI 393

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H  +V+  L   +++ + L+DMY KCG VE+A  VF  +++++ +S+N+++A  
Sbjct: 394 GKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGY 453

Query: 181 ARNGNLELAFGFLHRLPN-----PDTISY------------------------------- 204
            + G  E A    H + +     PD  ++                               
Sbjct: 454 VQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKN 513

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                E+++  ++ G +  A  I + M   N+ SWNS++ GY       EAL LF +MQ 
Sbjct: 514 IIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQL 573

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             +  D ++ S+MLS    LS    G  +H+ +++  ++   ++   L+DMY+KCG ++ 
Sbjct: 574 NGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDY 633

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  ++    +K+++  N M++ +  +G       LF+Q++     Q ++  + ++LA  +
Sbjct: 634 AWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQME-----QRNTALWNSILAGYA 688

Query: 381 HTDIPFDKVSEYFESMTKD--YGIKP--TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
           +  +  +  + + E +  D  Y +    T+ + CS +  +    ++     +I + GF +
Sbjct: 689 NKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQL---HSLIIKKGFVN 745

Query: 437 YGVVWR-ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
             VV   AL+     C  +  AR        + G +   +  + + Y+ HG    A ++ 
Sbjct: 746 CSVVLETALVDMYSKCGAITKARTV---FDNMNGKNIVSWNAMISGYSKHGCSKEALILY 802

Query: 496 NFMRERGL 503
             M ++G+
Sbjct: 803 EEMPKKGM 810



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 132/296 (44%), Gaps = 42/296 (14%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED---AIGVFG 163
           ++S +  C    S Q G +IH++++         +   ++ +Y + G ++D   A  +F 
Sbjct: 74  YSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFE 133

Query: 164 EMIDKDIISWNSVIAASAR----------------NGNLELAFGFLHRLP---------- 197
           EM ++++ +WN++I A AR                +GN    F F   +           
Sbjct: 134 EMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGG 193

Query: 198 -------------NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
                        N +      +++G A+FG ++DA+  L  +   +  +WN+++ GYV 
Sbjct: 194 VRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVK 253

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV 304
                EA  +F  M    V  D +TF++ L     L +   G  +HS +I  G      V
Sbjct: 254 ILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFV 313

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
            +AL+DMY+KC   E    +F  +  +N VTWN++I+  A+ G     + LF +++
Sbjct: 314 GNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQ 369


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 175/558 (31%), Positives = 296/558 (53%), Gaps = 48/558 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++YVL  +L A   L +    +Q+HCY+L+SG + +V +    + FY K + +    K+
Sbjct: 240 PDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKL 299

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   +VVSW ++I+G +Q+  +R AL+LFVE+ R     DA+  TS L +CG L +L
Sbjct: 300 FDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVAL 359

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H+  +K +++    + N LIDMY KC S+ DA  VF  M   D++S+N++I   
Sbjct: 360 EKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGY 419

Query: 181 ARNGNLELAFGFLHR----LPNPDTISY----------------NEVINGIAQFG----- 215
           +R   L  A          L +P  + +                N++   I ++G     
Sbjct: 420 SRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDE 479

Query: 216 --------------DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                          + DA ++   +   +   W ++ +GY  ++   E+L L+  +Q  
Sbjct: 480 FAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMS 539

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  +E+TF+ +++  + +++L  G   H+ VIK G D    VA+ L+DMY+K G +E A
Sbjct: 540 RLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEA 599

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F S   K+   WN+MI  YA++G+  K +++FE +  +  L+P+ VTF+ VL+ACSH
Sbjct: 600 HKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDM-IMEGLKPNYVTFVGVLSACSH 658

Query: 382 T---DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           T   D+ FD    +F+SM++ +GI+P +EH   M+ L+G+ G+++ A+  I ++      
Sbjct: 659 TGLLDLGFD----HFDSMSQ-FGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQAA 713

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
           VVWR+LLSA     ++++   +A   I         YV+L N++ S G W     +R  M
Sbjct: 714 VVWRSLLSACRVSGNVELGTYAAEMAISCNPADSGSYVLLSNIFASKGMWVNVRRLREKM 773

Query: 499 RERGLRKEAGCSWIEVEN 516
              G+ KE GCSWIEV N
Sbjct: 774 DISGVVKEPGCSWIEVNN 791



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 204/420 (48%), Gaps = 40/420 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNEY+L  ++RA +  G      Q+H  ++K G++ +V+V T+L+ FY K   + DA  +
Sbjct: 139 PNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLL 198

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   +  +W ++I+GY + G+ + +L LF +++   +  D Y  +S L+AC  L  L
Sbjct: 199 FDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFL 258

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH  +++  +   V + N  ID Y KC  V+    +F  M+DK+++SW +VIA  
Sbjct: 259 EGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGC 318

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGI------------------------- 211
            +N     A      +     NPD      V+N                           
Sbjct: 319 MQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDD 378

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     A+   + DA  + + M + +  S+N+++ GY  ++++ EAL LF EM+  
Sbjct: 379 FVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLS 438

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
                   F ++L   A L  L     IH  +IK G+       SAL+D+YSKC +V  A
Sbjct: 439 LSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDA 498

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  K++V W AM +GY +  +  + ++L++ L+  R L+P+  TF  V+ A S+
Sbjct: 499 RLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSR-LKPNEFTFAAVITAASN 557



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 115/470 (24%), Positives = 210/470 (44%), Gaps = 51/470 (10%)

Query: 22  CQQLHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           C+++H  I+  GF   ++F+   L+  Y K+N +  A+K+F  +   ++V+W+S++S Y 
Sbjct: 57  CKKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYT 116

Query: 81  QSGKYRKALNLFVELERS-EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
                 +AL LFV+  RS     + Y   S + AC Q G L   + IH  +VK    + V
Sbjct: 117 HHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDV 176

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN- 198
            +   LID Y K   ++DA  +F  +  K   +W ++IA  ++ G  +++     ++   
Sbjct: 177 YVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEG 236

Query: 199 ---PDTISYNEVING----------------IAQFGDIEDAIMI---------------- 223
              PD    + V++                 + + G + D  M+                
Sbjct: 237 HVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLG 296

Query: 224 ---LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
                 M   N  SW +++ G +  +   +AL LF EM       D +  +++L+    L
Sbjct: 297 RKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSL 356

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
            AL  G  +H+  IK  +D    V + L+DMY+KC  +  A  +F  +   +LV++NAMI
Sbjct: 357 VALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMI 416

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL---AACSHTDIPFDKVSEYFESMT 397
            GY+R   L + ++LF +++      P  + F+++L   A+  H ++     S     + 
Sbjct: 417 EGYSRQDKLCEALDLFREMRLSLS-SPTLLIFVSLLGVSASLYHLEL-----SNQIHGLI 470

Query: 398 KDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
             YG+        ++I +  +   V  A+ +  E+      VVW A+ S 
Sbjct: 471 IKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDI-VVWTAMFSG 519


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 158/518 (30%), Positives = 280/518 (54%), Gaps = 35/518 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+ L  +L+A + +    +    H  ++K GF+  +FV+ AL+ F+    SL D+ + 
Sbjct: 112 PNEFTLPFVLKACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRF 171

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+   +VVSWN++I GY Q+G+  +A  LF E+    + AD ++  S L AC   G+L
Sbjct: 172 FGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNL 231

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           ++G  +H  ++        ++ N L+DMYGKCG +  A   F  M  K++++W S++ A 
Sbjct: 232 EVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQ 291

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           A++G+++    +  +                               MP  N  SWN++++
Sbjct: 292 AKHGSVDAVRDWFEQ-------------------------------MPERNIVSWNAMIS 320

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
            YV   R+ E L L+  M+S  +  DE+T + +LS       L  G +IH  V     D 
Sbjct: 321 CYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNFNDP 380

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
            + + ++LLDMY++CGQV+ A  +F  +  KN+++WN +I   A +G   + +  F  + 
Sbjct: 381 GVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTM- 439

Query: 361 TVRD-LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
            V D   PD +TF+ +L+ACSH  +  +    YFE+M + Y ++P VEH   M+ L+G++
Sbjct: 440 -VSDAFSPDEITFVGLLSACSHGGL-LEAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRR 497

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G + +A  +I+++      VVW ALL A     ++++ ++   ++++LEG +  ++V++C
Sbjct: 498 GHLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNVEIGKLVIKQLLELEGITGGLFVLIC 557

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           NL+     W+    +R  M+E+G +K+ G S IEV+N+
Sbjct: 558 NLFYETNQWEDMKKLRKLMKEQGTKKDMGVSSIEVKNI 595



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 188/437 (43%), Gaps = 76/437 (17%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF-- 61
           + L  LL A S  G     + +HC++L SG   +  +  AL+  Y K   L  AH+ F  
Sbjct: 216 FTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDM 275

Query: 62  -----------------------------VEIPQPSVVSWNSLISGYVQSGKYRKALNLF 92
                                         ++P+ ++VSWN++IS YVQ G+  + L+L+
Sbjct: 276 MPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLY 335

Query: 93  VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC 152
             +    I  D ++    L+ACGQ G L  G  IH  +     + GV + N L+DMY +C
Sbjct: 336 NRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARC 395

Query: 153 GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVI 208
           G V+ AIG+F EM +K++ISWN +I A A +G  +    F   +     +PD I++  ++
Sbjct: 396 GQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLL 455

Query: 209 NGIAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
           +  +  G +E       +M       P    +  ++     R  + +A++L  +M  K  
Sbjct: 456 SACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIKP- 514

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
                              + WG L+ +C I   ++   +V   LL++        I   
Sbjct: 515 -----------------DVVVWGALLGACRIHGNVEIGKLVIKQLLELEG------ITGG 551

Query: 324 MFRSLCRKNLVTWNAMITGYARNG--DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           +F  +C  NL         Y  N   D+ K+ +L ++  T +D+   S+   N++     
Sbjct: 552 LFVLIC--NLF--------YETNQWEDMKKLRKLMKEQGTKKDMGVSSIEVKNIIHEFGV 601

Query: 382 TDIPFDKVSEYFESMTK 398
            D+  +  +E + ++ +
Sbjct: 602 EDLRHESTNEIYAAVDQ 618


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 166/536 (30%), Positives = 295/536 (55%), Gaps = 43/536 (8%)

Query: 21   YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
            + +Q+HC ++K  F  + +V T+L+  Y K  S+ DA K+F ++    V   N++IS ++
Sbjct: 667  FGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFI 726

Query: 81   QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
             +G+   AL L+ +++  E   D+++ +S L+ C  +GS   G  +H++++K S++  V 
Sbjct: 727  GNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVA 786

Query: 141  IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP- 199
            I + L+ MY KCGS EDA  VF  M ++D+++W S+IA   +N   + A      +    
Sbjct: 787  IQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEG 846

Query: 200  ------------------DTISYNEVINGIA--------------------QFGDIEDAI 221
                              + +    +I+G A                    +FG  E A 
Sbjct: 847  VKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAE 906

Query: 222  MILSSMPSPNSSSWNSILTGYVNRNRVPE-ALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
            M+ SSMP+ N  +WNS+++ Y + N +PE +++L  ++      +D  + +T+L  ++ +
Sbjct: 907  MVFSSMPNKNLVAWNSMISCY-SWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSV 965

Query: 281  SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
            +AL  G  +H+  I+  + + + V +AL+DMY KCG ++ A  +F ++ R+NLVTWN+MI
Sbjct: 966  AALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMI 1025

Query: 341  TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
             GY  +G+  + + LF+++K   +  PD VTFL ++ +CSH+ +  + ++  F+ M  +Y
Sbjct: 1026 AGYGSHGNCEEAVRLFKEMKR-SETAPDEVTFLALITSCSHSGMVEEGLN-LFQLMRIEY 1083

Query: 401  GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
            G++P +EH  S++ L+G+ G +  A   IR +   +   VW  LL A  A  ++++  + 
Sbjct: 1084 GVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELV 1143

Query: 461  AAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            A  ++K+E      YV L NLY     WD A+ +R  M+ RGL+K  GCSWIEV+N
Sbjct: 1144 ADNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKN 1199



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/420 (29%), Positives = 207/420 (49%), Gaps = 41/420 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y L  +L   + L W    +Q+H YI+++ F  + ++ TAL+G Y   +   +A  +
Sbjct: 545 PDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSL 604

Query: 61  FVEIPQPS-VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F ++   S +V+WN +I G+V++G + K+L L+   +       + SFT A  AC     
Sbjct: 605 FGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEV 664

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L  G  +H  ++K + +    +   L+ MY K GSVEDA  VF +++DK++   N++I+A
Sbjct: 665 LDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISA 724

Query: 180 SARNGNLELAFGFLHRLP---NP-DTISYNEVINGIA----------------------- 212
              NG    A G  +++     P D+ + + +++G +                       
Sbjct: 725 FIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSN 784

Query: 213 ------------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                       + G  EDA  +  +M   +  +W S++ G+    R  +AL LF  M+ 
Sbjct: 785 VAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEK 844

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           + V  D    ++++S   GL  +  G LIH   IK+GL++ + VA +L+DMYSK G  E 
Sbjct: 845 EGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAES 904

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A+ +F S+  KNLV WN+MI+ Y+ NG     I L  Q+        DSV+   VL A S
Sbjct: 905 AEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQ-HGFYLDSVSITTVLVAVS 963



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 200/424 (47%), Gaps = 52/424 (12%)

Query: 3   EYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFV 62
           ++    LL+  + L    + + +H  I+  G  S+ +++T+L+  Y K   L  A ++F 
Sbjct: 441 KFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFD 500

Query: 63  EIPQ-----PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
           ++ +     P +  WN +I GY + G + + L  F  ++   I  D YS +  L  C +L
Sbjct: 501 KMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRL 560

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSV 176
                G  IH  I++   E    +   LI MY  C    +A  +FG++ ++ +I++WN +
Sbjct: 561 SWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVM 620

Query: 177 IAASARNGNLE---------------------------------LAFGFLHRLPNPDTIS 203
           I     NG  E                                 L FG   R  + D I 
Sbjct: 621 IGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFG---RQVHCDVIK 677

Query: 204 YN---------EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
            N          ++   A+ G +EDA  +   +        N++++ ++   R  +AL L
Sbjct: 678 MNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGL 737

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           + +M++ + P+D +T S++LSG + + +  +G  +H+ VIK+ + +++ + SALL MY K
Sbjct: 738 YNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYK 797

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG  E ADS+F ++  +++V W +MI G+ +N      ++LF  ++    ++ DS    +
Sbjct: 798 CGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEK-EGVKADSDVMTS 856

Query: 375 VLAA 378
           V++A
Sbjct: 857 VISA 860



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 183/367 (49%), Gaps = 40/367 (10%)

Query: 2    NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
            + + +  LL   S +G   + + +H  ++K    SNV + +AL+  Y K  S  DA  +F
Sbjct: 749  DSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVF 808

Query: 62   VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
              + +  VV+W S+I+G+ Q+ +++ AL+LF  +E+  + AD+   TS ++A   L +++
Sbjct: 809  YTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVE 868

Query: 122  LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            LG  IH   +K  LE  V +A  L+DMY K G  E A  VF  M +K++++WNS+I+  +
Sbjct: 869  LGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYS 928

Query: 182  RNGNLELAF---------GF-------------------------LH----RLPNPDTIS 203
             NG  E++          GF                         LH    RL  P  + 
Sbjct: 929  WNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQ 988

Query: 204  Y-NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
              N +I+   + G ++ A +I  +MP  N  +WNS++ GY +     EA+ LF EM+  +
Sbjct: 989  VENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSE 1048

Query: 263  VPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
               DE TF  +++  +    +  G+ L     I+ G++  +   ++++D+  + G+++ A
Sbjct: 1049 TAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDA 1108

Query: 322  DSMFRSL 328
             S  R +
Sbjct: 1109 YSFIRGM 1115



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 147/358 (41%), Gaps = 61/358 (17%)

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135
           I   VQ GKY +AL L  +   S +    ++F S L  C  L +L  G  IH+ IV   L
Sbjct: 413 IKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGL 472

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
           +    IA  LI+MY KCG +  A+ VF +M +                           R
Sbjct: 473 QSDPYIATSLINMYVKCGLLGSALQVFDKMSES--------------------------R 506

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
              PD   +N VI+G  ++G  E                               E L  F
Sbjct: 507 DSAPDITVWNPVIDGYFKYGHFE-------------------------------EGLAQF 535

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
             MQ   +  D Y+ S +L     LS    G  IH  +I+   +    + +AL+ MYS C
Sbjct: 536 CRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSC 595

Query: 316 GQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
            +   A S+F  L  R N+V WN MI G+  NG   K +EL+   K   + +  S +F  
Sbjct: 596 SRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKN-ENCKLVSASFTG 654

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
              ACSH ++       + + +  ++   P V  C S++ +  + G V  A+++  ++
Sbjct: 655 AFTACSHGEVLDFGRQVHCDVIKMNFQDDPYV--CTSLLTMYAKSGSVEDAKKVFDQV 710


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 166/536 (30%), Positives = 295/536 (55%), Gaps = 43/536 (8%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           + +Q+HC ++K  F  + +V T+L+  Y K  S+ DA K+F ++    V   N++IS ++
Sbjct: 262 FGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFI 321

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
            +G+   AL L+ +++  E   D+++ +S L+ C  +GS   G  +H++++K S++  V 
Sbjct: 322 GNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVA 381

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP- 199
           I + L+ MY KCGS EDA  VF  M ++D+++W S+IA   +N   + A      +    
Sbjct: 382 IQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEG 441

Query: 200 ------------------DTISYNEVINGIA--------------------QFGDIEDAI 221
                             + +    +I+G A                    +FG  E A 
Sbjct: 442 VKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAE 501

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPE-ALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
           M+ SSMP+ N  +WNS+++ Y + N +PE +++L  ++      +D  + +T+L  ++ +
Sbjct: 502 MVFSSMPNKNLVAWNSMISCY-SWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSV 560

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           +AL  G  +H+  I+  + + + V +AL+DMY KCG ++ A  +F ++ R+NLVTWN+MI
Sbjct: 561 AALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMI 620

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
            GY  +G+  + + LF+++K   +  PD VTFL ++ +CSH+ +  + ++  F+ M  +Y
Sbjct: 621 AGYGSHGNCEEAVRLFKEMKR-SETAPDEVTFLALITSCSHSGMVEEGLN-LFQLMRIEY 678

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
           G++P +EH  S++ L+G+ G +  A   IR +   +   VW  LL A  A  ++++  + 
Sbjct: 679 GVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELV 738

Query: 461 AAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           A  ++K+E      YV L NLY     WD A+ +R  M+ RGL+K  GCSWIEV+N
Sbjct: 739 ADNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKN 794



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 120/406 (29%), Positives = 201/406 (49%), Gaps = 41/406 (10%)

Query: 15  DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS-VVSWN 73
           +L W    +Q+H YI+++ F  + ++ TAL+G Y   +   +A  +F ++   S +V+WN
Sbjct: 154 ELSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWN 213

Query: 74  SLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY 133
            +I G+V++G + K+L L+   +       + SFT A  AC     L  G  +H  ++K 
Sbjct: 214 VMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKM 273

Query: 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL 193
           + +    +   L+ MY K GSVEDA  VF +++DK++   N++I+A   NG    A G  
Sbjct: 274 NFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLY 333

Query: 194 HRLP---NP-DTISYNEVINGIA-----------------------------------QF 214
           +++     P D+ + + +++G +                                   + 
Sbjct: 334 NKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKC 393

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G  EDA  +  +M   +  +W S++ G+    R  +AL LF  M+ + V  D    ++++
Sbjct: 394 GSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVI 453

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
           S   GL  +  G LIH   IK+GL++ + VA +L+DMYSK G  E A+ +F S+  KNLV
Sbjct: 454 SAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLV 513

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            WN+MI+ Y+ NG     I L  Q+        DSV+   VL A S
Sbjct: 514 AWNSMISCYSWNGLPEMSINLLPQILQ-HGFYLDSVSITTVLVAVS 558



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 183/367 (49%), Gaps = 40/367 (10%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + + +  LL   S +G   + + +H  ++K    SNV + +AL+  Y K  S  DA  +F
Sbjct: 344 DSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVF 403

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             + +  VV+W S+I+G+ Q+ +++ AL+LF  +E+  + AD+   TS ++A   L +++
Sbjct: 404 YTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVE 463

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           LG  IH   +K  LE  V +A  L+DMY K G  E A  VF  M +K++++WNS+I+  +
Sbjct: 464 LGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYS 523

Query: 182 RNGNLELAF---------GF-------------------------LH----RLPNPDTIS 203
            NG  E++          GF                         LH    RL  P  + 
Sbjct: 524 WNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQ 583

Query: 204 Y-NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +I+   + G ++ A +I  +MP  N  +WNS++ GY +     EA+ LF EM+  +
Sbjct: 584 VENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSE 643

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
              DE TF  +++  +    +  G+ L     I+ G++  +   ++++D+  + G+++ A
Sbjct: 644 TAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDA 703

Query: 322 DSMFRSL 328
            S  R +
Sbjct: 704 YSFIRGM 710



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 193/424 (45%), Gaps = 71/424 (16%)

Query: 3   EYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFV 62
           ++    LL+  + L    + + +H  I+  G  S+ +++T+L+  Y K   L  A ++F 
Sbjct: 55  KFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFD 114

Query: 63  EIPQ-----PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
           ++ +     P +  WN +I GY + G + + L  F  ++                   +L
Sbjct: 115 KMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQ-------------------EL 155

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSV 176
                G  IH  I++   E    +   LI MY  C    +A  +FG++ ++ +I++WN +
Sbjct: 156 SWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVM 215

Query: 177 IAASARNGNLE---------------------------------LAFGFLHRLPNPDTIS 203
           I     NG  E                                 L FG   R  + D I 
Sbjct: 216 IGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFG---RQVHCDVIK 272

Query: 204 YN---------EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
            N          ++   A+ G +EDA  +   +        N++++ ++   R  +AL L
Sbjct: 273 MNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGL 332

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           + +M++ + P+D +T S++LSG + + +  +G  +H+ VIK+ + +++ + SALL MY K
Sbjct: 333 YNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYK 392

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG  E ADS+F ++  +++V W +MI G+ +N      ++LF  ++    ++ DS    +
Sbjct: 393 CGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEK-EGVKADSDVMTS 451

Query: 375 VLAA 378
           V++A
Sbjct: 452 VISA 455



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 157/349 (44%), Gaps = 28/349 (8%)

Query: 59  KMFVEIPQPSV-VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
           + F  + Q  V  S NS I   VQ GKY +AL L  +   S +    ++F S L  C  L
Sbjct: 9   RKFYSLRQTEVSPSINSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASL 68

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-----DIIS 172
            +L  G  IH+ IV   L+    IA  LI+MY KCG +  A+ VF +M +      DI  
Sbjct: 69  SNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITV 128

Query: 173 WNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIA---QF-GD--IEDAIM-ILS 225
           WN VI    + G+ E       R+           I+G      F GD  +E A++ + S
Sbjct: 129 WNPVIDGYFKYGHFEEGLAQFCRMQELSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYS 188

Query: 226 SMPSP--------------NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271
           S   P              N  +WN ++ G+V      ++L L+   ++++  +   +F+
Sbjct: 189 SCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFT 248

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
              +  +    L +G  +H  VIK        V ++LL MY+K G VE A  +F  +  K
Sbjct: 249 GAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDK 308

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            +   NAMI+ +  NG     + L+ ++K   +   DS T  ++L+ CS
Sbjct: 309 EVELRNAMISAFIGNGRAYDALGLYNKMKA-GETPVDSFTISSLLSGCS 356


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 166/516 (32%), Positives = 270/516 (52%), Gaps = 33/516 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+ L  +++A +      +   +H   L+ G +  VFV  AL+  Y    SL D+ + 
Sbjct: 110 PNEFTLPFVVKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRF 169

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+   +VVSWNS+I GY Q+G  R+  +LF E+ R     D ++  S L AC Q G+L
Sbjct: 170 FDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNL 229

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           ++G  +H +++       +++ + L+DMYGKCG +  A   F  M  K ++SW S++ A 
Sbjct: 230 EIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQ 289

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
            ++G++  A  +                                  MP  N  SWN++++
Sbjct: 290 TKHGSVNAARCWF-------------------------------DHMPERNIVSWNAMIS 318

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
            YV R +  EAL L+ +MQS+ +  DE T   +LS    +  LT G ++H  +     + 
Sbjct: 319 CYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNP 378

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
            + + ++LLDMY+KCGQV+ A S+F  +C +N+V+WN +I G A +G     I  F  + 
Sbjct: 379 DVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSMV 438

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
           T     PD +TF+ +L+ACSH  +  +    YFESM   Y +K  VEH   M+ L+G++G
Sbjct: 439 T-DSFAPDGITFVALLSACSHGGL-LETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRG 496

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
            + +A  +I+E+      VVW ALL A     ++ + R    ++++LEG S  ++V++ N
Sbjct: 497 HLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIKQLLELEGISGGLFVLISN 556

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           L      W+    +R  M+E G RK+ G S IE+ N
Sbjct: 557 LLYETHQWEDMKRLRKLMKEWGTRKDMGVSSIEINN 592



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 119/248 (47%), Gaps = 6/248 (2%)

Query: 212 AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271
           A  G +  A  +   +P P+   +N+I+  Y N +   EAL L   M  + +  +E+T  
Sbjct: 57  AGHGVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLP 116

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
            ++       A    + +H   ++ GL   + V +ALL  Y+  G +  +   F  +  +
Sbjct: 117 FVVKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDR 176

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT-DIPFDKVS 390
           N+V+WN+MI GYA+ GD  +V  LF +++    L+ D  T +++L ACS   ++   ++ 
Sbjct: 177 NVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLE-DEFTLVSLLIACSQEGNLEIGRLV 235

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450
            +   +     +   +E   +++ + G+ G++W A+R    +   S  V W ++L A   
Sbjct: 236 -HCRMLVSGSRVDLILE--SALVDMYGKCGDLWMARRCFEMMPIKSV-VSWTSMLCAQTK 291

Query: 451 CSDLDVAR 458
              ++ AR
Sbjct: 292 HGSVNAAR 299


>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 151/467 (32%), Positives = 260/467 (55%), Gaps = 3/467 (0%)

Query: 53  SLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALA 112
           ++A AH++F  I +P    WN++I G  QS     A++L+ ++E   +  D ++F   L 
Sbjct: 27  TMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLK 86

Query: 113 ACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS 172
           AC +L  +++G  +H ++ +   E    + N LI  +  CG +  A  +F     +D+++
Sbjct: 87  ACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVA 146

Query: 173 WNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           W+++ A  AR G L +A      +P  D +S+N +I G A+ G++E A  +   +P  + 
Sbjct: 147 WSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDV 206

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
            +WN+++ GYV      +AL +F EM+S     DE T  ++LS    L  L  G  IH C
Sbjct: 207 VTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCC 266

Query: 293 VIKQGL-DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
           + + G  D S+++ +AL+DMY+KCG +  A  +F+ +  K++ TWN+++ G A +G   K
Sbjct: 267 ISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEK 326

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411
            I LF +++ ++ ++PD +TF+ VL ACSH     ++  +YF+ M  +Y I+P + H   
Sbjct: 327 SIHLFTEMRKLK-IRPDEITFVGVLVACSHAG-RVEEGRQYFDLMRDEYNIEPNIRHYGC 384

Query: 412 MIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471
           M+ L+G+ G +  A   I  +      +VWR LL A     ++++ R +  +++K+  D 
Sbjct: 385 MVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDE 444

Query: 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVA 518
              YV+L N+Y S G WD    +R  M + G+RKEAGCS IE +N A
Sbjct: 445 SGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLIEGDNKA 491



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 5/178 (2%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           Y K   +  A K+F E+P+  VV+WN++I+GYV  G  ++AL +F E+       D  + 
Sbjct: 185 YAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTM 244

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSL-ERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
            S L+AC  LG L  G  IH  I +    +  V++ N LIDMY KCGS+  A+ VF  M 
Sbjct: 245 LSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMR 304

Query: 167 DKDIISWNSVIAASARNGNLELA---FGFLHRLP-NPDTISYNEVINGIAQFGDIEDA 220
           +KD+ +WNSV+   A +G+ E +   F  + +L   PD I++  V+   +  G +E+ 
Sbjct: 305 EKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEG 362



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 183/433 (42%), Gaps = 43/433 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +L+A + L W      +H  + + GF SN FV   L+ F+     LA A  +
Sbjct: 76  PDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARAL 135

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +  VV+W++L +GY + G+   A  LF E+       D  S+   +    + G +
Sbjct: 136 FDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMP----VKDLVSWNVMITGYAKRGEM 191

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID----KDIISWNSV 176
           +    +  ++ K    R VV  N +I  Y  CGS + A+ +F EM       D ++  S+
Sbjct: 192 ESARKLFDEVPK----RDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSL 247

Query: 177 IAASARNGNLELA---------FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           ++A    G+L+            GF     +   +  N +I+  A+ G I  A+ +   M
Sbjct: 248 LSACTDLGDLDAGQRIHCCISEMGF----RDLSVLLGNALIDMYAKCGSIVRALEVFQGM 303

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
              + S+WNS+L G        +++HLF EM+   +  DE TF  +L   +    +  G 
Sbjct: 304 REKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGR 363

Query: 288 LIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYAR 345
                +  +  ++ +I     ++D+  + G +  A     ++    N + W  ++     
Sbjct: 364 QYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRI 423

Query: 346 NGDLTKVIEL-----FEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           +G+    +EL      + LK   D   D V   N+ A+    D       E    +  D 
Sbjct: 424 HGN----VELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWD-----GVEKVRKLMDDS 474

Query: 401 GIKPTVEHCCSMI 413
           G++   E  CS+I
Sbjct: 475 GVRK--EAGCSLI 485



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 91/170 (53%), Gaps = 3/170 (1%)

Query: 198 NPDTISYNEVI--NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           N +T +  E+I  + IA  G +  A  +   +  P++  WN+++ G         A+ L+
Sbjct: 7   NSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLY 66

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
            +M++  V  D++TF  +L     L  +  G  +H  V + G +++  V + L+  ++ C
Sbjct: 67  SQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANC 126

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           G + +A ++F    ++++V W+A+  GYAR G+L    +LF+++  V+DL
Sbjct: 127 GDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEM-PVKDL 175


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 168/533 (31%), Positives = 276/533 (51%), Gaps = 41/533 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH + +K+ F ++  V TA++  Y K +SL DA + F  +P  +V + N+++ G V++
Sbjct: 257 RQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRT 316

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   +AL LF  + RS I  D  S +   +AC ++     G+ +H   +K   +  V + 
Sbjct: 317 GLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVR 376

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PN 198
           N ++D+YGKC ++ +A  VF EM  +D +SWN++IAA  +N   E    +L+ +      
Sbjct: 377 NAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGME 436

Query: 199 PDTISYNEVINGIA-----------------------------------QFGDIEDAIMI 223
           PD  +Y  V+   A                                   + G I +A  +
Sbjct: 437 PDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKL 496

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +      SWNSI++G+    +  EA   F EM    V  D +T++T+L   A L+ +
Sbjct: 497 HDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATI 556

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH  +IKQ +     ++S L+DMY+KCG +  +  MF    + + V+WNAMI GY
Sbjct: 557 ELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGY 616

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A +G   + +E+FE+++   ++ P+  TF+ VL ACSH  +  D    YF  MT  Y ++
Sbjct: 617 ALHGQGFEALEMFERMQQA-NVVPNHATFVAVLRACSHVGL-LDDGCRYFYLMTSRYKLE 674

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           P +EH   M+ ++G+      A + IR +   +  V+W+ LLS      D++VA  +A+ 
Sbjct: 675 PQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASN 734

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           V++L+ D   VY++L N+Y   G W   S  R  MR+  L+KE GCSWIEV++
Sbjct: 735 VLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQS 787



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 121/429 (28%), Positives = 189/429 (44%), Gaps = 73/429 (17%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA--------HK--------------- 59
           Q  H  +L SGF+   FVS  L+  Y +    A A        H+               
Sbjct: 24  QAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTAYAHA 83

Query: 60  --------MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSAL 111
                   +F  +P P VVSWN+L+SGY Q G +R ++ L VE+ R  +  D  +    L
Sbjct: 84  GDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLL 143

Query: 112 AACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII 171
            ACG L  L LG+ IH+  VK  LE  V   + L+DMYGKC S+EDA+  F  M +++ +
Sbjct: 144 KACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSV 203

Query: 172 SWNSVIAASARNGN----LELAFGFLHRLP------------------------------ 197
           SW + IA   +N      LEL F  + RL                               
Sbjct: 204 SWGAAIAGCVQNEQYTRGLEL-FVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAH 262

Query: 198 ------NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEA 251
                 + D +    +++  A+   + DA     S+P+    + N+++ G V      EA
Sbjct: 263 AIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEA 322

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           L LF  M    +  D  + S + S  A +     G+ +H   IK G D  + V +A+LD+
Sbjct: 323 LQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDL 382

Query: 312 YSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371
           Y KC  +  A  +F+ + +++ V+WNA+I    +N      I    ++     ++PD  T
Sbjct: 383 YGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRY-GMEPDDFT 441

Query: 372 FLNVLAACS 380
           + +VL AC+
Sbjct: 442 YGSVLKACA 450



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 190/420 (45%), Gaps = 40/420 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  LL+A   L       Q+H   +K+G   +V   +AL+  Y K  SL DA + 
Sbjct: 134 PDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRF 193

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + + + VSW + I+G VQ+ +Y + L LFV+++R  +     ++ S   +C  +  L
Sbjct: 194 FHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCL 253

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
                +H+  +K       V+   ++D+Y K  S+ DA   F  + +  + + N+++   
Sbjct: 254 STARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGL 313

Query: 181 ARNG----------------------NLELAF-------GFLHRLP----------NPDT 201
            R G                      +L   F       G+L  L           + D 
Sbjct: 314 VRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDV 373

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +++   +   + +A ++   M   +S SWN+I+          + +    EM   
Sbjct: 374 CVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRY 433

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D++T+ ++L   AGL +L +G ++H   IK GL     V+S ++DMY KCG +  A
Sbjct: 434 GMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEA 493

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +   +  + LV+WN++I+G++ N    +  + F ++  +  ++PD  T+  VL  C++
Sbjct: 494 QKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDI-GVKPDHFTYATVLDTCAN 552



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 119/256 (46%), Gaps = 31/256 (12%)

Query: 105 YSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGE 164
           +S    L A     +L  G A H++++         ++NCL+ MY +CG    A GVF  
Sbjct: 5   FSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDV 64

Query: 165 MIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMIL 224
           M                               P+ DT+S+N ++   A  GD   A  + 
Sbjct: 65  M-------------------------------PHRDTVSWNTMLTAYAHAGDTGAAASLF 93

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
            +MP P+  SWN++L+GY  R    +++ L  EM  + V  D  T + +L    GL  L 
Sbjct: 94  GAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLA 153

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G+ IH+  +K GL+  +   SAL+DMY KC  +E A   F  +  +N V+W A I G  
Sbjct: 154 LGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCV 213

Query: 345 RNGDLTKVIELFEQLK 360
           +N   T+ +ELF Q++
Sbjct: 214 QNEQYTRGLELFVQMQ 229



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 151/321 (47%), Gaps = 29/321 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +L+A + L    Y   +H   +KSG   + FVS+ ++  Y K   + +A K+
Sbjct: 437 PDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKL 496

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
              I    +VSWNS+ISG+  + +  +A   F E+    +  D +++ + L  C  L ++
Sbjct: 497 HDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATI 556

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IH +I+K  +     I++ L+DMY KCG++ D++ +F +    D +SWN++I   
Sbjct: 557 ELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGY 616

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
           A +G    A     R+      P+  ++  V+   +  G ++D       M S     P 
Sbjct: 617 ALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEPQ 676

Query: 232 SSSWNSILTGYVNRNRVP-EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
              + + +   + R++ P EAL        + +P++               A+ W  L+ 
Sbjct: 677 LEHF-ACMVDILGRSKGPQEALKFI-----RSMPLEA-------------DAVIWKTLLS 717

Query: 291 SCVIKQGLDASIVVASALLDM 311
            C I+Q ++ +   AS +L +
Sbjct: 718 ICKIRQDVEVAETAASNVLRL 738



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 269 TFSTM--LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
           TFS +  L   AG SAL  G   H+ ++  G   +  V++ LL MY++CG    A  +F 
Sbjct: 4   TFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFD 63

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
            +  ++ V+WN M+T YA  GD      LF  +       PD V++  +L+      +  
Sbjct: 64  VMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMP-----DPDVVSWNALLSGYCQRGMFR 118

Query: 387 DKVSEYFESMTKDYGIKP 404
           D V    E   +  G+ P
Sbjct: 119 DSVGLSVEMARR--GVAP 134


>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 179/560 (31%), Positives = 285/560 (50%), Gaps = 51/560 (9%)

Query: 1   PNEYVLFHLLRASS-----DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLA 55
           P+ Y    +L+  +     D+G     QQ+H  I+K G+  +V+  +AL+  Y K   + 
Sbjct: 100 PDAYTFGSILKGVACACRLDVG-----QQVHSLIVKMGYEEHVYAGSALLDMYAKCERVR 154

Query: 56  DAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACG 115
           DA  +F  IP+ + VSWN+LI+G+V  G +  A  L   +E   +  D  +F+  L    
Sbjct: 155 DAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRLDDGTFSPLLTLLD 214

Query: 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF-GEMIDKDIISWN 174
           +    +L M +H KI+K+ ++    + N  I  Y +CGS+EDA  VF G +  +D+++WN
Sbjct: 215 EKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAERVFDGAVGSRDLVTWN 274

Query: 175 SVIAASARNGNLELAFGFLHRLPN----PDTISYNEVI-------NGIAQFG-------- 215
           S++AA   +   E AF     +      PD  +Y  +I       NG +  G        
Sbjct: 275 SMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACSHKDNGKSLHGLVIKRGLE 334

Query: 216 -------------------DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
                               +EDA+ +  SM S +  SWNSILTG+        AL LF 
Sbjct: 335 QLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWNSILTGFSQTGHSENALKLFV 394

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
            M+   V +D Y FS +L   + L+ L  G  IH   +K G +++  VAS+L+ MYSKCG
Sbjct: 395 HMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQIHVLTVKSGFESNDFVASSLIFMYSKCG 454

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            +E A   F    + + +TWN+++  YA++G     + LF Q++  + ++ D +TF+  L
Sbjct: 455 MIEDARKSFEKTAKDSSITWNSIMFAYAQHGQGDVALGLFFQMRD-KKVKMDHITFVAAL 513

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
            ACSH  +  ++     +SM  DYGI P +EH    + L G+ G +  A+ +I  + F  
Sbjct: 514 TACSHIGL-VEQGRYLLKSMASDYGISPRMEHYACAVDLFGRAGYLDEAKALIESMPFDP 572

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
             +VW+ LL A  AC D+++A   A+ +++LE +    YV+L N+Y     WD  + M  
Sbjct: 573 DAMVWKTLLGACRACGDIELAAQVASHLLELEPEEHCTYVILSNMYGHLKRWDEKACMAR 632

Query: 497 FMRERGLRKEAGCSWIEVEN 516
            MRER ++K  G SWIEV+N
Sbjct: 633 LMRERKVKKVPGWSWIEVKN 652



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 128/477 (26%), Positives = 221/477 (46%), Gaps = 53/477 (11%)

Query: 26  HCYILKSGFLSNVFVSTALMGFYRKINS--LADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           HC  +K G  ++++ +  ++  Y + +S  L  A  +F E+     V+WN++ISGYV SG
Sbjct: 22  HCQTIKLGRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSG 81

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
               A  L+  ++   +  DAY+F S L        L +G  +HS IVK   E  V   +
Sbjct: 82  SLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAGS 141

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH-------RL 196
            L+DMY KC  V DA  VF  +  ++ +SWN++IA     G+ + AF  L        RL
Sbjct: 142 ALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRL 201

Query: 197 PNP--------------------------------DTISYNEVINGIAQFGDIEDAIMIL 224
            +                                 D    N  I   +Q G +EDA  + 
Sbjct: 202 DDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAERVF 261

Query: 225 S-SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
             ++ S +  +WNS+L  ++  +R   A  LF +MQ      D YT++T++S  +     
Sbjct: 262 DGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACSHKDN- 320

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMY--SKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
             G  +H  VIK+GL+  + + +A++ MY  S    +E A ++F S+  K+ V+WN+++T
Sbjct: 321 --GKSLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWNSILT 378

Query: 342 GYARNGDLTKVIELFEQLK-TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           G+++ G     ++LF  ++  V D+  D   F  VL +CS  D+   ++ +    +T   
Sbjct: 379 GFSQTGHSENALKLFVHMRFAVVDI--DHYAFSAVLRSCS--DLATLQLGQQIHVLTVKS 434

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
           G +       S+I +  + G +  A++   +    S  + W +++ A       DVA
Sbjct: 435 GFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDS-SITWNSIMFAYAQHGQGDVA 490


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 173/532 (32%), Positives = 284/532 (53%), Gaps = 36/532 (6%)

Query: 15  DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFY--RKINSLADAHKMFVEIPQPSVVSW 72
           + G +    QLH   +K+  L++  VS+ L+  Y   +IN+L  AH +F  I +P++VSW
Sbjct: 24  NCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSW 83

Query: 73  NSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132
           N LI  Y+++ +   A+ LF +L   +   D+++    L  C +LG+LQ G  IH  ++K
Sbjct: 84  NLLIKCYIENQRSNDAIALFCKL-LCDFVPDSFTLPCVLKGCARLGALQEGKQIHGLVLK 142

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF 192
                   + + L+ MY KCG +E    VF  M DKD++SWNS+I   AR G +ELA   
Sbjct: 143 IGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEM 202

Query: 193 LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN---------------- 236
              +P  D+ S+  +I+G+++ G +E A  +   MP  NS SWN                
Sbjct: 203 FEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAK 262

Query: 237 ---------------SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
                          S++TGY    +  +AL LF  M  +D+  +  T    +S  +G+ 
Sbjct: 263 ELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMV 322

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           +L  G  +HS ++K G     V+ + L++MYSKCG V+ A  +FRS+ +K L  W ++I 
Sbjct: 323 SLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIV 382

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G   +G + + +ELF+++     L+P ++TF+ VL ACSH     D    YF+ MT DYG
Sbjct: 383 GLGMHGLVEQTLELFDEMCRT-GLKPHAITFIGVLNACSHAGFAED-AHRYFKMMTYDYG 440

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           IKP++EH   +I ++ + G +  A+  I  +   +  V+W +LLS S    ++ +   +A
Sbjct: 441 IKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAA 500

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
             +I L  D+   YV+L N+Y + G W+    +R  M+++G++K+ GCS IE
Sbjct: 501 QHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIE 552



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 179/415 (43%), Gaps = 60/415 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + L  +L+  + LG     +Q+H  +LK GF  + FV ++L+  Y K   +    K+
Sbjct: 112 PDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKV 171

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VVSWNSLI GY + G+   AL +F E+       D++S+T  +    + G L
Sbjct: 172 FDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEK----DSFSWTILIDGLSKSGKL 227

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +    +  ++      R  V  N +I+ Y K G    A  +F +M ++ +++WNS+I   
Sbjct: 228 EAARDVFDRMPI----RNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGY 283

Query: 181 ARNGNLELAFGFLHRL------PNPDTI--------------------SY---------- 204
            RN     A      +      PN  TI                    SY          
Sbjct: 284 ERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDG 343

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                +I   ++ G ++ A+ +  S+P      W S++ G      V + L LF EM   
Sbjct: 344 VLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRT 403

Query: 262 DVPMDEYTFSTML-----SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
            +     TF  +L     +G A  +   + M+ +      G+  SI     L+D+  + G
Sbjct: 404 GLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYD----YGIKPSIEHYGCLIDVLCRAG 459

Query: 317 QVEIA-DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370
            +E A D++ R   + N V W ++++G  ++G++ ++ E   Q   + DL PD+ 
Sbjct: 460 HLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNI-RMGEYAAQ--HLIDLAPDTT 511


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 176/551 (31%), Positives = 289/551 (52%), Gaps = 41/551 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N +V   +L+      W      +H  + K GF S+ FV TAL+  Y        A ++F
Sbjct: 144 NPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVF 203

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             I    +VSW  +++ YV++  + ++L LF  +       + ++F S L AC  L    
Sbjct: 204 DAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFN 263

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           +G A+H    K S    + +   LID+Y K G V+DA+ VF EM   D+I W+ +IA  A
Sbjct: 264 VGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYA 323

Query: 182 RNGNLELAFGFLHR------LPNPDTISY------------------------------- 204
           ++   E A     R      LPN  T++                                
Sbjct: 324 QSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVF 383

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +++  A+ G +E+++ + S  P+    SWN+++ GYV      +AL LF +M    
Sbjct: 384 VSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQ 443

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V   E T+S++L   AG++AL  G  IHS  +K   D + VV +AL+DMY+KCG ++ A 
Sbjct: 444 VQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDAR 503

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F  L   + V+WNAMI+GY+ +G   + ++ FE +    + +PD VTF+ +L+ACS+ 
Sbjct: 504 LVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLET-ECKPDKVTFVGILSACSNA 562

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  D+   YF+SM ++Y I+P  EH   M+ L+G+ G + +A +++ E+ F    +VWR
Sbjct: 563 GL-LDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWR 621

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
           ALLSA    +D+++ RISA  V+++E + +  +V+L N+Y +   W   + +R  M+ +G
Sbjct: 622 ALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKG 681

Query: 503 LRKEAGCSWIE 513
           +RKE G SWIE
Sbjct: 682 IRKEPGLSWIE 692



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 119/418 (28%), Positives = 203/418 (48%), Gaps = 40/418 (9%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N Y+   LL++    G     + LHC I+K G   ++F +  L+ FY K +SL DA K+F
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLF 102

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            E+P  + VS+ +LI GY Q  ++ +A+ LF  L+      + + F++ L         +
Sbjct: 103 DEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAK 162

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           LG ++H+ + K   +    +   LID Y  CG  E A  VF  +  KD++SW  ++A   
Sbjct: 163 LGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYV 222

Query: 182 RNGNLELAFGFLHRL------PNPDTIS-----------YN------------------- 205
            N   E +     R+      PN  T +           +N                   
Sbjct: 223 ENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELF 282

Query: 206 ---EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
              E+I+   + GD++DA+ +   MP  +   W+ ++  Y    +  EA+ +F  M+   
Sbjct: 283 VGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGL 342

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V  +++T +++L   A L  L  G  IH  V+K GLD ++ V++AL+DMY+KCG++E + 
Sbjct: 343 VLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSL 402

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            +F        V+WN +I GY + G+  K + LF+ +   + +Q   VT+ +VL AC+
Sbjct: 403 QLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQ-VQGTEVTYSSVLRACA 459



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 186/430 (43%), Gaps = 74/430 (17%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +    +L+A   L      + +H    K+ +L  +FV   L+  Y K   + DA ++
Sbjct: 244 PNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQV 303

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+  V+ W+ +I+ Y QS +  +A+ +F  + R  +  + ++  S L AC  L  L
Sbjct: 304 FEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDL 363

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           QLG  IH  +VK  L+  V ++N L+DMY KCG +E+++ +F E  +   +SWN+VI   
Sbjct: 364 QLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGY 423

Query: 181 ARNGNLELAFGF----------------------------------LHRLP-----NPDT 201
            + GN E A                                     +H L      + +T
Sbjct: 424 VQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNT 483

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           +  N +I+  A+ G+I+DA ++   +   +  SWN++++GY       EAL  F  M   
Sbjct: 484 VVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLET 543

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           +   D+ TF  +LS  +    L  G      ++++             D+   C +    
Sbjct: 544 ECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEE------------YDI-EPCAE---- 586

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS- 380
                         +  M+    R+G L K  +L  ++      +P  + +  +L+AC  
Sbjct: 587 -------------HYTCMVWLLGRSGHLDKAAKLVHEIP----FEPSVMVWRALLSACVI 629

Query: 381 HTDIPFDKVS 390
           H D+   ++S
Sbjct: 630 HNDVELGRIS 639



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 159/320 (49%), Gaps = 27/320 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++ L  LL+A + L       Q+HC+++K G   NVFVS ALM  Y K   + ++ ++
Sbjct: 345 PNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQL 404

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E P  + VSWN++I GYVQ+G   KAL LF ++   ++     +++S L AC  + +L
Sbjct: 405 FSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAAL 464

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IHS  VK   ++  V+ N LIDMY KCG+++DA  VF  + + D +SWN++I+  
Sbjct: 465 EPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGY 524

Query: 181 ARNG----NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           + +G     L+     L     PD +++  +++  +  G ++       SM       P 
Sbjct: 525 SVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPC 584

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
           +  +  ++        + +A  L  E     +P +              S + W  L+ +
Sbjct: 585 AEHYTCMVWLLGRSGHLDKAAKLVHE-----IPFEP-------------SVMVWRALLSA 626

Query: 292 CVIKQGLDASIVVASALLDM 311
           CVI   ++   + A  +L++
Sbjct: 627 CVIHNDVELGRISAQRVLEI 646


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 172/551 (31%), Positives = 288/551 (52%), Gaps = 41/551 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N +V   +L+    + W    + +H  +LK G+ SN F+ TAL+  Y     ++ A ++F
Sbjct: 45  NPFVFTTVLKLLVSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVF 104

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            EI    +VSW  +I+ Y ++  + +AL  F ++  +    + ++F   L AC  L +  
Sbjct: 105 DEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFD 164

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  +H  ++K + ER + +   L+++Y +CG  +DA   FG+M   D+I W+ +I+  A
Sbjct: 165 AGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFA 224

Query: 182 RNGNLELA---FGFLHR---LPNPDTIS-------------------------------- 203
           ++G  E A   F  + R   +PN  T S                                
Sbjct: 225 QSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVF 284

Query: 204 -YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N ++   A+ G IE ++ +  ++   N  SWN+I+  YV       AL LF  M    
Sbjct: 285 VSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQ 344

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V   E T+S++L   A L+AL  G+ +H    K      + V +AL+DMY+KCG ++ A 
Sbjct: 345 VQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDAR 404

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            MF  L  ++ V+WNA+I GY+ +G   + I++F  +K  +  +PD +TF+ VL+ACS+T
Sbjct: 405 FMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETK-CKPDELTFVGVLSACSNT 463

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
               D+  +YF SM +DYGI+P +EH   M+ LMG+ G + +A + I ++ F    ++WR
Sbjct: 464 G-RLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWR 522

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
           ALL A    +D+++ RISA  V++LE   +  +V+L N+Y     W   + +R  M+ +G
Sbjct: 523 ALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKG 582

Query: 503 LRKEAGCSWIE 513
           ++KE G SWIE
Sbjct: 583 VKKEPGLSWIE 593



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 167/360 (46%), Gaps = 40/360 (11%)

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F E+P+ + VS+ +LI GY QS K+ +A  LF  L       + + FT+ L     +  
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            +LG  +H  ++K        I   LID Y   G V  A  VF E+  KD++SW  +IA+
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 180 SARNGNLELAFGFLHRLP----NPDTISYNEVIN---GIAQF------------------ 214
            A N     A  F  ++      P+  ++  V+    G+  F                  
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 215 --------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                         GD +DA      MP  +   W+ +++ +    +  +AL +F +M+ 
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             V  +++TFS++L   A + +L     IH   +K GL   + V++AL+  Y+KCG +E 
Sbjct: 242 AFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQ 301

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +  +F +L  +N V+WN +I  Y + GD  + + LF  +   + +Q   VT+ ++L AC+
Sbjct: 302 SMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQ-VQATEVTYSSILRACA 360



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 159/323 (49%), Gaps = 27/323 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++    +L+AS+D+      + +H + LK+G  ++VFVS ALM  Y K   +  + ++
Sbjct: 246 PNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMEL 305

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   + VSWN++I  YVQ G   +AL+LF  + R ++ A   +++S L AC  L +L
Sbjct: 306 FEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAAL 365

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG+ +H    K    + V + N LIDMY KCGS++DA  +F  +  +D +SWN++I   
Sbjct: 366 ELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGY 425

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
           + +G    A    + +      PD +++  V++  +  G +++     +SM       P 
Sbjct: 426 SMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPC 485

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  ++        + +A+        +D+P +              S + W  L+ +
Sbjct: 486 MEHYTCMVWLMGRSGNLDQAVKFI-----EDIPFEP-------------SVMIWRALLGA 527

Query: 292 CVIKQGLDASIVVASALLDMYSK 314
           CVI   ++   + A  +L++  +
Sbjct: 528 CVIHNDVELGRISAQRVLELEPR 550



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 146/325 (44%), Gaps = 39/325 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +    +L+A   L      + +HC +LK+ +  +++V   L+  Y +     DA + 
Sbjct: 145 PNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRA 204

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P+  V+ W+ +IS + QSG+  KAL +F ++ R+ +  + ++F+S L A   + SL
Sbjct: 205 FGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESL 264

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            L   IH   +K  L   V ++N L+  Y KCG +E ++ +F  + D++ +SWN++I + 
Sbjct: 265 DLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSY 324

Query: 181 ARNGNLELAFGFLHRLPN---------------------------------------PDT 201
            + G+ E A      +                                          D 
Sbjct: 325 VQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDV 384

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+  A+ G I+DA  +   +   +  SWN+I+ GY       EA+ +F  M+  
Sbjct: 385 AVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKET 444

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWG 286
               DE TF  +LS  +    L  G
Sbjct: 445 KCKPDELTFVGVLSACSNTGRLDEG 469



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 1/158 (0%)

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           M+   MP  N+ S+ +++ GY   N+  EA  LF  +  +   ++ + F+T+L  +  + 
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
               G ++H CV+K G  ++  + +AL+D YS  G V +A  +F  +  K++V+W  MI 
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            YA N   ++ +E F Q++ V   +P++ TF  VL AC
Sbjct: 121 SYAENDCFSEALEFFSQMR-VAGFKPNNFTFAGVLKAC 157


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 161/505 (31%), Positives = 279/505 (55%), Gaps = 45/505 (8%)

Query: 55  ADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC 114
           A A+K+F ++P+ ++V+W  +I+ + Q G  R A++LF+++E S    D ++++S L+AC
Sbjct: 2   APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 61

Query: 115 GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC---GSVEDAIGVFGEMIDKDII 171
            +LG L LG  +HS++++  L   V +   L+DMY KC   GSV+D+  VF +M + +++
Sbjct: 62  TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 121

Query: 172 SWNSVIAASARNGN-----LELAFGFLHRLPNPDTISY---------------------- 204
           SW ++I A A++G      +EL    +     P+  S+                      
Sbjct: 122 SWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 181

Query: 205 -------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEA 251
                        N +I+  A+ G +EDA      +   N  S+N+I+ GY    +  EA
Sbjct: 182 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 241

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
             LF E+    + +  +TF+++LSG A + A+  G  IH  ++K G  ++  + +AL+ M
Sbjct: 242 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 301

Query: 312 YSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371
           YS+CG +E A  +F  +  +N+++W +MITG+A++G  T+ +E+F ++      +P+ +T
Sbjct: 302 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLET-GTKPNEIT 360

Query: 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431
           ++ VL+ACSH  +   +  ++F SM K++GI P +EH   M+ L+G+ G +  A   I  
Sbjct: 361 YVAVLSACSHVGM-ISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 419

Query: 432 LGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA 491
           +   +  +VWR LL A     + ++ R +A  +++ E D    Y++L NL+ S G W   
Sbjct: 420 MPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDV 479

Query: 492 SVMRNFMRERGLRKEAGCSWIEVEN 516
             +R  M+ER L KEAGCSWIEVEN
Sbjct: 480 VKIRKSMKERNLIKEAGCSWIEVEN 504



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 191/396 (48%), Gaps = 25/396 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKI---NSLADA 57
           P+ +    +L A ++LG     +QLH  +++ G   +V V  +L+  Y K     S+ D+
Sbjct: 49  PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDS 108

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKY-RKALNLFVELERSEIYADAYSFTSALAACGQ 116
            K+F ++P+ +V+SW ++I+ Y QSG+  ++A+ LF ++    I  + +SF+S L ACG 
Sbjct: 109 RKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGN 168

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           L     G  ++S  VK  +     + N LI MY + G +EDA   F  + +K+++S+N++
Sbjct: 169 LSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAI 228

Query: 177 IAASARNGNLELAFGFLHRLPNP----DTISYNEVINGIAQFGDIEDAIMI----LSSMP 228
           +   A+N   E AF   + + +        ++  +++G A  G +     I    L    
Sbjct: 229 VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGY 288

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             N    N++++ Y     +  A  +F EM+ ++V     ++++M++G A     T  + 
Sbjct: 289 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNV----ISWTSMITGFAKHGFATRALE 344

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT-----WNAMITGY 343
           +   +++ G   + +   A+L   S  G +      F S+ +++ +      +  M+   
Sbjct: 345 MFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLL 404

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            R+G L + +E    +     L  D++ +  +L AC
Sbjct: 405 GRSGLLVEAMEFINSMP----LMADALVWRTLLGAC 436



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 130/273 (47%), Gaps = 22/273 (8%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
           +    LL  ++ +G     +Q+H  +LK G+ SN  +  AL+  Y +  ++  A ++F E
Sbjct: 258 FTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 317

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
           +   +V+SW S+I+G+ + G   +AL +F ++  +    +  ++ + L+AC  +G +  G
Sbjct: 318 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 377

Query: 124 MAIHSKIVKYSLERGVVIA----NCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
               + + K   E G+V       C++D+ G+ G + +A+     M +  D + W +++ 
Sbjct: 378 QKHFNSMYK---EHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLG 434

Query: 179 ASARNGNLEL----AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN--- 231
           A   +GN EL    A   L + P+ D  +Y  + N  A  G  +D + I  SM   N   
Sbjct: 435 ACRVHGNTELGRHAAEMILEQEPD-DPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIK 493

Query: 232 --SSSW----NSILTGYVNRNRVPEALHLFGEM 258
               SW    N +   +V     P+A  ++ E+
Sbjct: 494 EAGCSWIEVENRVHRFHVGETSHPQAWQIYQEL 526


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 161/505 (31%), Positives = 279/505 (55%), Gaps = 45/505 (8%)

Query: 55  ADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC 114
           A A+K+F ++P+ ++V+W  +I+ + Q G  R A++LF+++E S    D ++++S L+AC
Sbjct: 7   APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 66

Query: 115 GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC---GSVEDAIGVFGEMIDKDII 171
            +LG L LG  +HS++++  L   V +   L+DMY KC   GSV+D+  VF +M + +++
Sbjct: 67  TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 126

Query: 172 SWNSVIAASARNGN-----LELAFGFLHRLPNPDTISY---------------------- 204
           SW ++I A A++G      +EL    +     P+  S+                      
Sbjct: 127 SWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 186

Query: 205 -------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEA 251
                        N +I+  A+ G +EDA      +   N  S+N+I+ GY    +  EA
Sbjct: 187 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 246

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
             LF E+    + +  +TF+++LSG A + A+  G  IH  ++K G  ++  + +AL+ M
Sbjct: 247 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 306

Query: 312 YSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371
           YS+CG +E A  +F  +  +N+++W +MITG+A++G  T+ +E+F ++      +P+ +T
Sbjct: 307 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLET-GTKPNEIT 365

Query: 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431
           ++ VL+ACSH  +   +  ++F SM K++GI P +EH   M+ L+G+ G +  A   I  
Sbjct: 366 YVAVLSACSHVGM-ISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 424

Query: 432 LGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA 491
           +   +  +VWR LL A     + ++ R +A  +++ E D    Y++L NL+ S G W   
Sbjct: 425 MPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDV 484

Query: 492 SVMRNFMRERGLRKEAGCSWIEVEN 516
             +R  M+ER L KEAGCSWIEVEN
Sbjct: 485 VKIRKSMKERNLIKEAGCSWIEVEN 509



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 191/396 (48%), Gaps = 25/396 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKI---NSLADA 57
           P+ +    +L A ++LG     +QLH  +++ G   +V V  +L+  Y K     S+ D+
Sbjct: 54  PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDS 113

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKY-RKALNLFVELERSEIYADAYSFTSALAACGQ 116
            K+F ++P+ +V+SW ++I+ Y QSG+  ++A+ LF ++    I  + +SF+S L ACG 
Sbjct: 114 RKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGN 173

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           L     G  ++S  VK  +     + N LI MY + G +EDA   F  + +K+++S+N++
Sbjct: 174 LSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAI 233

Query: 177 IAASARNGNLELAFGFLHRLPNP----DTISYNEVINGIAQFGDIEDAIMI----LSSMP 228
           +   A+N   E AF   + + +        ++  +++G A  G +     I    L    
Sbjct: 234 VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGY 293

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             N    N++++ Y     +  A  +F EM+ ++V     ++++M++G A     T  + 
Sbjct: 294 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNV----ISWTSMITGFAKHGFATRALE 349

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT-----WNAMITGY 343
           +   +++ G   + +   A+L   S  G +      F S+ +++ +      +  M+   
Sbjct: 350 MFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLL 409

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            R+G L + +E    +     L  D++ +  +L AC
Sbjct: 410 GRSGLLVEAMEFINSMP----LMADALVWRTLLGAC 441



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 130/273 (47%), Gaps = 22/273 (8%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
           +    LL  ++ +G     +Q+H  +LK G+ SN  +  AL+  Y +  ++  A ++F E
Sbjct: 263 FTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 322

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
           +   +V+SW S+I+G+ + G   +AL +F ++  +    +  ++ + L+AC  +G +  G
Sbjct: 323 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 382

Query: 124 MAIHSKIVKYSLERGVVIA----NCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
               + + K   E G+V       C++D+ G+ G + +A+     M +  D + W +++ 
Sbjct: 383 QKHFNSMYK---EHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLG 439

Query: 179 ASARNGNLEL----AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN--- 231
           A   +GN EL    A   L + P+ D  +Y  + N  A  G  +D + I  SM   N   
Sbjct: 440 ACRVHGNTELGRHAAEMILEQEPD-DPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIK 498

Query: 232 --SSSW----NSILTGYVNRNRVPEALHLFGEM 258
               SW    N +   +V     P+A  ++ E+
Sbjct: 499 EAGCSWIEVENRVHRFHVGETSHPQAWQIYQEL 531


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 182/557 (32%), Positives = 290/557 (52%), Gaps = 48/557 (8%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
           Y    +L+  + +G+    QQ+H  ++K G+  NVF  +AL+  Y K   + DA ++F  
Sbjct: 101 YSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKS 160

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLF--VELERSEIYADAYSFTSALAACGQLGSLQ 121
           I   + V+WN+LISGY Q G    A  L   +ELE  EI  D  +F   L         +
Sbjct: 161 INIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEI--DDGTFAPLLTLLDDPDLHK 218

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF-GEMIDKDIISWNSVIAAS 180
           L   +H+KIVK+ L     + N +I  Y +CGS+EDA  VF G +  +D+++WNS++AA 
Sbjct: 219 LTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAY 278

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVING-------------------------- 210
             N   E AF     +      PD  +Y  VI+                           
Sbjct: 279 LVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLV 338

Query: 211 ------IAQF-----GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                 IA +       +++A+ I  S+ + +  SWNSILTG+       +AL  F  M+
Sbjct: 339 PISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMR 398

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           S+ V +D Y FS +L   + L+ L  G  +H  V+K G + +  VAS+L+ MYSKCG +E
Sbjct: 399 SQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIE 458

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A   F +  + + + WN++I GYA++G     ++LF  +K  R ++ D +TF+ VL AC
Sbjct: 459 DARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKD-RRVKLDHITFVAVLTAC 517

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH  +  +  S + +SM  DYGI P +EH   MI L+G+ G +  A+ +I  + F    +
Sbjct: 518 SHIGLVEEGWS-FLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAM 576

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           VW+ LL A   C D+++A   A+ +++LE +    YV+L +++     W+  + ++  M+
Sbjct: 577 VWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMK 636

Query: 500 ERGLRKEAGCSWIEVEN 516
           ERG++K  G SWIEV+N
Sbjct: 637 ERGVKKVPGWSWIEVKN 653



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 124/444 (27%), Positives = 218/444 (49%), Gaps = 45/444 (10%)

Query: 26  HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKY 85
           HC  +KSG  ++++ +  ++  Y K   +  A KMF E  Q   VSWN++I+G+V  G +
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
             AL     ++R     D YSF S L     +G +++G  +HS +VK   E  V   + L
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSAL 141

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL------------ 193
           +DMY KC  VEDA  VF  +  ++ ++WN++I+  A+ G+   AF  L            
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDD 201

Query: 194 ---------------HRLPN------------PDTISYNEVINGIAQFGDIEDAIMIL-S 225
                          H+L               DT   N +I   ++ G IEDA  +   
Sbjct: 202 GTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDG 261

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           ++ + +  +WNS+L  Y+  N+  EA  LF EMQ      D YT+++++S     S    
Sbjct: 262 AIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQ 321

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMY--SKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
           G  +H  VIK+GL+  + ++++L+ MY  S    ++ A ++F SL  K+ V+WN+++TG+
Sbjct: 322 GKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGF 381

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           +++G     ++ FE +++ + +  D   F  VL +CS  D+   ++ +    +    G +
Sbjct: 382 SQSGLSEDALKFFENMRS-QYVVIDHYAFSAVLRSCS--DLATLQLGQQVHVLVLKSGFE 438

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQR 427
           P      S+I +  + G +  A++
Sbjct: 439 PNGFVASSLIFMYSKCGVIEDARK 462



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 155/345 (44%), Gaps = 32/345 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINS--LADAH 58
           P+ Y    ++ A+ +       + LH  ++K G    V +S +L+  Y K +S  + +A 
Sbjct: 301 PDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEAL 360

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
            +F  +     VSWNS+++G+ QSG    AL  F  +    +  D Y+F++ L +C  L 
Sbjct: 361 NIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLA 420

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           +LQLG  +H  ++K   E    +A+ LI MY KCG +EDA   F        I+WNS+I 
Sbjct: 421 TLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIF 480

Query: 179 ASARNGN----LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS----- 229
             A++G     L+L F    R    D I++  V+   +  G +E+    L SM S     
Sbjct: 481 GYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIP 540

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
           P    +  ++       R+ EA  L   M     P +               A+ W  L+
Sbjct: 541 PRMEHYACMIDLLGRAGRLDEAKALIEAM-----PFEP-------------DAMVWKTLL 582

Query: 290 HSCVIKQGLDASIVVASALLDMYSK--CGQVEIADSMFRSLCRKN 332
            +C     ++ +  VAS LL++  +  C  V +  SMF  L R N
Sbjct: 583 GACRTCGDIELASQVASHLLELEPEEHCTYV-LLSSMFGHLRRWN 626



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 126/249 (50%), Gaps = 15/249 (6%)

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
           N +I+G A+ G+I  A  +       ++ SWN+++ G+VN      AL     M+     
Sbjct: 38  NNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFA 97

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
           +D Y+F ++L G+A +  +  G  +HS ++K G + ++   SALLDMY+KC +VE A  +
Sbjct: 98  VDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEV 157

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
           F+S+  +N VTWNA+I+GYA+ GD      L + ++ +  ++ D  TF          D 
Sbjct: 158 FKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCME-LEGVEIDDGTF--APLLTLLDDP 214

Query: 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI------RELGFGSYG 438
              K++    +    +G+      C ++I    + G +  A+R+       R+L      
Sbjct: 215 DLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDL------ 268

Query: 439 VVWRALLSA 447
           V W ++L+A
Sbjct: 269 VTWNSMLAA 277



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 8/182 (4%)

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
           +  +AL    + H   IK G  ASI  A+ ++  Y+KCG++ IA  MF    +++ V+WN
Sbjct: 10  SSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWN 69

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL--AACSHTDIPFDKVSEYFES 395
            MI G+   G+    +E  + +K       D  +F ++L   AC    + + +V +   S
Sbjct: 70  TMIAGFVNLGNFETALEFLKSMKRY-GFAVDGYSFGSILKGVAC----VGYVEVGQQVHS 124

Query: 396 MTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLD 455
           M    G +  V    +++ +  +   V  A  + + +   +  V W AL+S      D  
Sbjct: 125 MMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRN-SVTWNALISGYAQVGDRG 183

Query: 456 VA 457
            A
Sbjct: 184 TA 185


>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
 gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
          Length = 580

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 165/519 (31%), Positives = 283/519 (54%), Gaps = 40/519 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  L +LL+A   + + +  +Q+HC  + +G  S  ++   L+  Y +   +  AH++
Sbjct: 64  PDKQTLLYLLQA---VNFISQVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQV 120

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P P +VS+N +I GY + G   +A+ LF E+    +  D ++    L +CGQLG++
Sbjct: 121 FEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNV 180

Query: 121 QLGMAIHS--KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           + G A+H   +  K ++   +++ N L+DMY KC  VE A+  FG + +KDI+SWN ++A
Sbjct: 181 KFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVA 240

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
             A+ G LE A  F +++P  D +S+N                               S+
Sbjct: 241 GCAKVGELEQARLFFYQMPCRDIVSWN-------------------------------SL 269

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           +TGY  R        L  +M  + V  D  T  +++S      AL  G   H  VI+  +
Sbjct: 270 VTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQI 329

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
                + SAL+DMY KCG +E A  +F+ + +K++  W  MITG A +G  +K +ELF +
Sbjct: 330 KLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAFHGYGSKALELFSE 389

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           ++   D+ PD VTF++VL+ACSH+ +  D+  + F SMT DYGI+P VEH   ++ L+ +
Sbjct: 390 MQ--EDVSPDDVTFVSVLSACSHSGL-VDQGIKVFSSMT-DYGIEPGVEHYGCLVDLLAR 445

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G +  A+ +I ++       +W A+L+A  A  D+++A I++ E++ L+ + +  Y +L
Sbjct: 446 SGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIASRELLNLDPEEEGGYTLL 505

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
            N+Y + G W  +  +R  M  RG++K AGCS + V+ V
Sbjct: 506 SNIYAASGRWSYSKKIRETMESRGVKKTAGCSSVVVDGV 544


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 163/532 (30%), Positives = 276/532 (51%), Gaps = 41/532 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H  ILKSG   N ++   L+  Y K  SL DA ++F  I   ++VSW ++I  +V  
Sbjct: 116 REVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAG 175

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            +  +A   +  ++ +    D  +F S L A      LQ+G  +H +I K  LE    + 
Sbjct: 176 NQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG 235

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
             L+ MY KCG +  A  +F ++ +K++++W  +IA  A+ G +++A   L ++      
Sbjct: 236 TSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVA 295

Query: 199 PDTISYNEVINGIA-----------------------------------QFGDIEDAIMI 223
           P+ I+Y  ++ G                                     + G +++A  +
Sbjct: 296 PNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKL 355

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +P  +  +W +++TGY       EA+ LF  MQ + +  D+ TF++ L+  +  + L
Sbjct: 356 FGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFL 415

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH  ++  G    + + SAL+ MY+KCG ++ A  +F  +  +N+V W AMITG 
Sbjct: 416 QEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGC 475

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A++G   + +E FEQ+K  + ++PD VTF +VL+AC+H  +  ++  ++F SM  DYGIK
Sbjct: 476 AQHGRCREALEYFEQMKK-QGIKPDKVTFTSVLSACTHVGL-VEEGRKHFRSMYLDYGIK 533

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           P VEH    + L+G+ G +  A+ +I  + F     VW ALLSA    SD++    +A  
Sbjct: 534 PMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAEN 593

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           V+KL+ D D  YV L N+Y + G ++ A  +R  M +R + KE G SWIEV+
Sbjct: 594 VLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVD 645



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/375 (28%), Positives = 187/375 (49%), Gaps = 62/375 (16%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF--VELERSEIYADAY 105
           +RK+++LA++                  +S   + G+ ++AL +   + L+ + +Y+D  
Sbjct: 56  FRKVDTLANSGD----------------VSILCKQGRLKEALGILNTMILQGTRVYSDV- 98

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
            F   L  C +L SL+ G  +H+ I+K  ++    + N L+ MY KCGS+ DA  VF  +
Sbjct: 99  -FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGI 157

Query: 166 IDKDIISWNSVIAA-SARNGNLELAFGFLHRLP----NPDTISYNEVINGI--------- 211
            D++I+SW ++I A  A N NLE A+     +      PD +++  ++N           
Sbjct: 158 RDRNIVSWTAMIEAFVAGNQNLE-AYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVG 216

Query: 212 --------------------------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245
                                     A+ GDI  A +I   +P  N  +W  ++ GY  +
Sbjct: 217 QKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQ 276

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
            +V  AL L  +MQ  +V  ++ T++++L G     AL  G  +H  +I+ G    I V 
Sbjct: 277 GQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVV 336

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           +AL+ MY KCG ++ A  +F  L  +++VTW AM+TGYA+ G   + I+LF +++  + +
Sbjct: 337 NALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQ-QGI 395

Query: 366 QPDSVTFLNVLAACS 380
           +PD +TF + L +CS
Sbjct: 396 KPDKMTFTSALTSCS 410



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/423 (23%), Positives = 194/423 (45%), Gaps = 48/423 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++     LL A ++       Q++H  I K+G      V T+L+G Y K   ++ A  +
Sbjct: 195 PDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVI 254

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P+ +VV+W  LI+GY Q G+   AL L  +++++E+  +  ++TS L  C    +L
Sbjct: 255 FDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLAL 314

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H  I++    R + + N LI MY KCG +++A  +FG++  +D+++W +++   
Sbjct: 315 EHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGY 374

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGI------------------------- 211
           A+ G  + A     R+      PD +++   +                            
Sbjct: 375 AQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDV 434

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     A+ G ++DA ++ + M   N  +W +++TG     R  EAL  F +M+ +
Sbjct: 435 YLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQ 494

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGML-IHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            +  D+ TF+++LS    +  +  G     S  +  G+   +   S  +D+  + G +E 
Sbjct: 495 GIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEE 554

Query: 321 ADSMFRSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS----VTFLNV 375
           A+++  ++  +     W A+++    + D+ +     E    V  L PD     V   N+
Sbjct: 555 AENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAE---NVLKLDPDDDGAYVALSNI 611

Query: 376 LAA 378
            AA
Sbjct: 612 YAA 614


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 163/521 (31%), Positives = 279/521 (53%), Gaps = 40/521 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NEY    +L A S L       Q+H  I KS FLS+V++ +AL+  Y K  ++ DA ++F
Sbjct: 151 NEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVF 210

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            E+   +VVSWNSLI+ + Q+G   +AL++F  +  S +  D  +  S ++AC  L +++
Sbjct: 211 DEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIK 270

Query: 122 LGMAIHSKIVKY-SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +G  +H ++VK   L   ++++N  +DMY KC  +++A  +F  M  +++I+  S+I+  
Sbjct: 271 VGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMIS-- 328

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                                        G A     + A ++ + M   N  SWN+++ 
Sbjct: 329 -----------------------------GYAMAASTKAARLMFTKMAERNVVSWNALIA 359

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL-- 298
           GY       EAL LF  ++ + V    Y+F+ +L   A L+ L  GM  H  V+K G   
Sbjct: 360 GYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKF 419

Query: 299 ----DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
               +  I V ++L+DMY KCG VE    +FR +  ++ V+WNAMI G+A+NG   + +E
Sbjct: 420 QSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALE 479

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
           LF ++    + +PD +T + VL+AC H     ++   YF SMT+D+G+ P  +H   M+ 
Sbjct: 480 LFREMLESGE-KPDHITMIGVLSACGHAGF-VEEGRHYFSSMTRDFGVAPLRDHYTCMVD 537

Query: 415 LMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474
           L+G+ G +  A+ MI E+      V+W +LL+A     ++ + +  A +++++E  +   
Sbjct: 538 LLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGP 597

Query: 475 YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           YV+L N+Y   G W+    +R  MR+ G+ K+ GCSWI+++
Sbjct: 598 YVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQ 638



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 151/282 (53%), Gaps = 35/282 (12%)

Query: 101 YADAYSFTSALAAC--GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
           + D+  F   L +C   +L ++ +   +H+ ++K      + I N LID Y KCGS+ED 
Sbjct: 16  FTDSSPFAKLLDSCIKSKLSAIYVRY-VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDG 74

Query: 159 IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIE 218
             VF                                ++P  +  ++N V+ G+ + G ++
Sbjct: 75  RQVFD-------------------------------KMPQRNIYTWNSVVTGLTKLGFLD 103

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
           +A  +  SMP  +  +WNS+++G+   +R  EAL  F  M  +   ++EY+F+++LS  +
Sbjct: 104 EADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACS 163

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
           GL+ +  G+ +HS + K    + + + SAL+DMYSKCG V  A  +F  +  +N+V+WN+
Sbjct: 164 GLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNS 223

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +IT + +NG   + +++F+ +   R ++PD VT  +V++AC+
Sbjct: 224 LITCFEQNGPAVEALDVFQMMLESR-VEPDEVTLASVISACA 264



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 21/243 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL------SNVFVSTALMGFYRKINSL 54
           P  Y   ++L+A +DL       Q H ++LK GF        ++FV  +L+  Y K   +
Sbjct: 384 PTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCV 443

Query: 55  ADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC 114
            + + +F ++ +   VSWN++I G+ Q+G   +AL LF E+  S    D  +    L+AC
Sbjct: 444 EEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSAC 503

Query: 115 GQLGSLQLGMAIHSKIVKYSLERGVVIA------NCLIDMYGKCGSVEDAIGVFGEM-ID 167
           G  G ++ G    S     S+ R   +A       C++D+ G+ G +E+A  +  EM + 
Sbjct: 504 GHAGFVEEGRHYFS-----SMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQ 558

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMIL 224
            D + W S++AA   + N+ L      +L      ++  Y  + N  A+ G  ED + + 
Sbjct: 559 PDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVR 618

Query: 225 SSM 227
            SM
Sbjct: 619 KSM 621


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 169/533 (31%), Positives = 274/533 (51%), Gaps = 41/533 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH + +K+ F S+  V TA++  Y K  +L DA + F+ +P  +V + N+++ G V++
Sbjct: 272 RQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRT 331

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   +A+ LF  + RS +  D  S +   +AC ++     G+ +H   VK   +  V + 
Sbjct: 332 GLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVR 391

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PN 198
           N ++D+YGKC ++ +A  VF EM  +D +SWN++IAA  +N   E     L+ +      
Sbjct: 392 NAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGME 451

Query: 199 PDTISYNEVINGIA-----------------------------------QFGDIEDAIMI 223
           PD  +Y  V+   A                                   + G I +A  +
Sbjct: 452 PDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKL 511

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +      SWNSI++G+    +  EA   F EM    V  D +T++T+L   A L+ +
Sbjct: 512 HDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATI 571

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH  +IKQ +     ++S L+DMY+KCG +  +  MF    + + V+WNAMI GY
Sbjct: 572 ELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNAMICGY 631

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A +G   + +E+FE+++   ++ P+  TF+ VL ACSH  +  D   +YF  MT  Y + 
Sbjct: 632 ALHGQGLEALEMFERMQRA-NVVPNHATFVAVLRACSHVGL-LDDGCQYFHLMTSRYKLV 689

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           P +EH   M+ ++G+      A   IR +   +  VVW+ LLS      D++VA  +A+ 
Sbjct: 690 PQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQDVEVAETAASN 749

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           V++L+ D   VY++L N+Y   G W   S  R  MR+  LRKE GCSWIEV++
Sbjct: 750 VLRLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQGRLRKEPGCSWIEVQS 802



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 132/499 (26%), Positives = 221/499 (44%), Gaps = 76/499 (15%)

Query: 20  TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH--------------------- 58
           T  Q  H  +L SGF+   FVS  L+  Y +    A AH                     
Sbjct: 36  TTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDTVSWNTMLTAY 95

Query: 59  ----------KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFT 108
                      +F  +P P VVSWN+LISGY Q G +R ++ L +E+ R  +  D  +  
Sbjct: 96  VHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLA 155

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
             L +CG L  L LG+ IH+  VK  LE  V   + L+DMYGKC S++DA+  F  M ++
Sbjct: 156 VLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGER 215

Query: 169 DIISWNSVIAASARNGN----LEL------------------AFGFLHRLP--------- 197
           + +SW + IA   +N      +EL                  AF     +P         
Sbjct: 216 NSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLH 275

Query: 198 --------NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
                   + D +    +++  A+ G++ DA      +P  N  + N+++ G V      
Sbjct: 276 AHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGA 335

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
           EA+ LF  M    V  D  + S + S  A +     G+ +H   +K G D  + V +A+L
Sbjct: 336 EAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAIL 395

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI-ELFEQLKTVRDLQPD 368
           D+Y KC  +  A  +F+ + +++ V+WNA+I    +N      I  L E L++   ++PD
Sbjct: 396 DLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRS--GMEPD 453

Query: 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM 428
             T+ +VL AC+        +  + +++    G+   V    +++ +  + G +  AQ++
Sbjct: 454 DFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSS--TVVDMYCKCGAITEAQKL 511

Query: 429 IRELGFGSYGVVWRALLSA 447
              +G G   V W +++S 
Sbjct: 512 HDRIG-GQELVSWNSIISG 529



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 187/398 (46%), Gaps = 42/398 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H   +K+G  ++V   +AL+  Y K  SL DA + F  + + + VSW + I+G VQ+ 
Sbjct: 172 QIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNE 231

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           +Y + + LFV+++R  +     ++ SA  +C  +  L     +H+  +K       V+  
Sbjct: 232 QYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGT 291

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLP-N 198
            ++D+Y K G++ DA   F  +   ++ + N+++    R G     ++L F F+ R    
Sbjct: 292 AIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQL-FQFMTRSGVG 350

Query: 199 PDTISYNEVINGIAQ--------------------------------FGDIE---DAIMI 223
            D IS + V +  A+                                +G  +   +A ++
Sbjct: 351 FDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLV 410

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              M   +S SWN+I+          + +    EM    +  D++T+ ++L   AGL +L
Sbjct: 411 FQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSL 470

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
            +G+++H   IK GL     V+S ++DMY KCG +  A  +   +  + LV+WN++I+G+
Sbjct: 471 EYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGF 530

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           +      +    F ++  +  ++PD  T+  VL  C++
Sbjct: 531 SLTKQSEEAQRFFSEMLDM-GVKPDHFTYATVLDTCAN 567



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 118/256 (46%), Gaps = 31/256 (12%)

Query: 105 YSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGE 164
           +S    L A     +L  G A H++++         ++NCL+ MY +CG    A GVF  
Sbjct: 20  FSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDT 79

Query: 165 MIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMIL 224
           M                               P+ DT+S+N ++      GD + A  + 
Sbjct: 80  M-------------------------------PHRDTVSWNTMLTAYVHAGDTDTAASLF 108

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
            +MP P+  SWN++++GY        ++ L  EM  + V +D  T + +L    GL  L 
Sbjct: 109 GTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLA 168

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G+ IH+  +K GL+  +   SAL+DMY KC  ++ A   F  +  +N V+W A I G  
Sbjct: 169 LGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCV 228

Query: 345 RNGDLTKVIELFEQLK 360
           +N   T+ +ELF Q++
Sbjct: 229 QNEQYTRGMELFVQMQ 244



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 152/321 (47%), Gaps = 29/321 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +L+A + L    Y   +H   +KSG   + FVS+ ++  Y K  ++ +A K+
Sbjct: 452 PDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKL 511

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
              I    +VSWNS+ISG+  + +  +A   F E+    +  D +++ + L  C  L ++
Sbjct: 512 HDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATI 571

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IH +I+K  +     I++ L+DMY KCG++ D++ +F +    D +SWN++I   
Sbjct: 572 ELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNAMICGY 631

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
           A +G    A     R+      P+  ++  V+   +  G ++D       M S     P 
Sbjct: 632 ALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTSRYKLVPQ 691

Query: 232 SSSWNSILTGYVNRNRVP-EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
              + + +   + R++ P EAL        + +P++               A+ W  L+ 
Sbjct: 692 LEHF-ACMVDILGRSKGPQEALEFI-----RSMPIEA-------------DAVVWKTLLS 732

Query: 291 SCVIKQGLDASIVVASALLDM 311
            C I+Q ++ +   AS +L +
Sbjct: 733 ICKIRQDVEVAETAASNVLRL 753



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 8/116 (6%)

Query: 269 TFSTM--LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
           TFS +  L   AG SALT G   H+ ++  G   +  V++ LL MY++CG    A  +F 
Sbjct: 19  TFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFD 78

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA-CSH 381
           ++  ++ V+WN M+T Y   GD      LF  +       PD V++  +++  C H
Sbjct: 79  TMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMP-----DPDVVSWNTLISGYCQH 129


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 169/536 (31%), Positives = 292/536 (54%), Gaps = 41/536 (7%)

Query: 20  TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79
           ++ + LH Y +K+ F+++VFV +AL+  Y KI  + +   +F E+P  +VVSW ++I+G 
Sbjct: 85  SFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGL 144

Query: 80  VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
           V++G  ++AL  F ++   ++  D Y+F+SAL AC   G+L  G  IH + +K       
Sbjct: 145 VRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVS 204

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP-- 197
            +AN L  MY KCG ++  + +F  M  +D++SW ++I ++ + G  E A     R+   
Sbjct: 205 FVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRET 264

Query: 198 --NPDTISYNEVINGIAQFGDIE---------------DAIMILSSMPSPNSS------- 233
             +P+  ++  VI+G A  G IE               D++ + +S+ +  S        
Sbjct: 265 DVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLA 324

Query: 234 -------------SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
                        SW+++++GY       EA      M+ +    +E+ F+++LS    +
Sbjct: 325 STVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNM 384

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           + L  G  +H+ V+  GL+ + +V SAL++MYSKCG ++ A  +F      N+V+W AMI
Sbjct: 385 AILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMI 444

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
            GYA +G   + I+LF++L  V  L+PDSVTF+ VLAACSH  +  D    YF S++K +
Sbjct: 445 NGYAEHGYSQEAIDLFKKLPKV-GLRPDSVTFIAVLAACSHAGL-VDLGFHYFNSLSKVH 502

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
            I P+ +H   MI L+ + G +  A+ MI+ + F    VVW  LL A     D+D  + +
Sbjct: 503 QICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRA 562

Query: 461 AAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           A ++++L+ +    ++ L N+Y + G W  A+ +R  M+ +G+ KE G SWI+ ++
Sbjct: 563 AEKILQLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSKGVVKEPGWSWIKFKD 618



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 189/377 (50%), Gaps = 45/377 (11%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYADAYSFT 108
           K   L +A ++F ++ Q   +SW ++ISGYV      +AL+LF ++     ++ D +  +
Sbjct: 13  KTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILS 72

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
            AL ACG   S+  G ++H   VK      V + + L+DMY K G V++   VF EM  +
Sbjct: 73  LALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLR 132

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIA------------ 212
           +++SW ++IA   R G  + A  +   +       DT +++  +   A            
Sbjct: 133 NVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIH 192

Query: 213 -----------------------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
                                  + G ++  + +  SM   +  SW +I+   V   +  
Sbjct: 193 CQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEE 252

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
            A+  F  M+  DV  +E+TF+ ++SG A L  + WG  +H+ VI++GL  S+ VA++++
Sbjct: 253 NAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIM 312

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR--DLQP 367
            MYSKC Q+++A ++F+ L R+++++W+ MI+GYA+ G      E F+ L  +R    +P
Sbjct: 313 AMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGE---EAFDYLSWMRREGPRP 369

Query: 368 DSVTFLNVLAACSHTDI 384
           +   F +VL+ C +  I
Sbjct: 370 NEFAFASVLSVCGNMAI 386



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 179/390 (45%), Gaps = 43/390 (11%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + Y     L+A +D G   Y +++HC  LK GF +  FV+  L   Y K   L    ++F
Sbjct: 168 DTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLF 227

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             + Q  VVSW ++I   VQ G+   A+  F  +  +++  + ++F + ++ C  LG ++
Sbjct: 228 ESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIE 287

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  +H+ +++  L   + +AN ++ MY KC  ++ A  VF  +  +DIISW+++I+  A
Sbjct: 288 WGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYA 347

Query: 182 RNGNLELAFGFLHRL----PNPDTISYNEV------------------------------ 207
           + G  E AF +L  +    P P+  ++  V                              
Sbjct: 348 QGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTM 407

Query: 208 -----INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                IN  ++ G I++A  I       N  SW +++ GY       EA+ LF ++    
Sbjct: 408 VQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVG 467

Query: 263 VPMDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +  D  TF  +L+    AGL  L +        + Q +  S      ++D+  + G++  
Sbjct: 468 LRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQ-ICPSKDHYGCMIDLLCRAGRLND 526

Query: 321 ADSMFRSL-CRKNLVTWNAMITGYARNGDL 349
           A+SM +S+  +++ V W+ ++     +GD+
Sbjct: 527 AESMIQSMPFQRDDVVWSTLLRACRIHGDV 556



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 154/329 (46%), Gaps = 27/329 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+    ++   + LG   + +QLH ++++ G + ++ V+ ++M  Y K   L  A  +
Sbjct: 268 PNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTV 327

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  ++SW+++ISGY Q G   +A +    + R     + ++F S L+ CG +  L
Sbjct: 328 FQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAIL 387

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H+ ++   LE+  ++ + LI+MY KCGS+++A  +F E    +I+SW ++I   
Sbjct: 388 EQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGY 447

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
           A +G  + A     +LP     PD++++  V+   +  G ++      +S+       P+
Sbjct: 448 AEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPS 507

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  ++       R+ +A  +   +QS     D+               + W  L+ +
Sbjct: 508 KDHYGCMIDLLCRAGRLNDAESM---IQSMPFQRDD---------------VVWSTLLRA 549

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEI 320
           C I   +D     A  +L +   C    I
Sbjct: 550 CRIHGDVDCGKRAAEKILQLDPNCAVTHI 578



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 2/179 (1%)

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ-SKDV 263
           N V+  + + G + +A  +   M   +  SW +I++GYVN     EAL LF +M     +
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
            MD +  S  L       ++++G  +H   +K     S+ V SAL+DMY K G+V+    
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCI 124

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           +F+ +  +N+V+W A+I G  R G   + +  F  +  ++ +  D+ TF + L AC+ +
Sbjct: 125 VFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDM-WIQKVGCDTYTFSSALKACADS 182


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 157/500 (31%), Positives = 273/500 (54%), Gaps = 12/500 (2%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKI------NSLADAHKMFVEIPQPSVVSWNSLIS 77
           Q+H  I+K+    N FV   L+   R++      N L  A  +F EIP P    WN++I 
Sbjct: 21  QIHALIIKTSLDGNNFVLAKLL---RRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIR 77

Query: 78  GYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE 136
            Y+ S   +++++LF ++   E I  D+YS +  + ACG+L     G  +H++++K  L 
Sbjct: 78  AYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLG 137

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196
             + +   LI+MY K G +E A  +  EM   D++ +N ++A   R G + LA     R+
Sbjct: 138 SDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRM 197

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
           P  D +S+N +I+G A  GD+  A  +       +  SW+S++  Y    +  EAL LF 
Sbjct: 198 PERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFH 257

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           EMQ  +V  D+ T  ++LS    + AL  G +IH C+ +  ++  + + ++L+DMY+KCG
Sbjct: 258 EMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCG 317

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            ++ +  +F  +  +++  W+AMI G A +G     ++ F ++ +  D++P+ VTF+ VL
Sbjct: 318 DIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMIS-EDIKPNDVTFIGVL 376

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
           +ACSH  +  D+   YF SM+K Y + P +EH   ++ ++G+ G +  A  +I+ + F  
Sbjct: 377 SACSHIGL-VDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAP 435

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
             +VWRALL A     ++++A  +   +++LE   D  YV+L N+Y+    WD    +R 
Sbjct: 436 DAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRR 495

Query: 497 FMRERGLRKEAGCSWIEVEN 516
            M+   ++K  G S IEV+N
Sbjct: 496 MMKNINIQKVPGSSSIEVDN 515



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 144/328 (43%), Gaps = 71/328 (21%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRK----------- 50
           + Y L  +++A   L      Q+LH  +LK G  S++FV TAL+  Y K           
Sbjct: 104 DSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNIL 163

Query: 51  --------------------INSLADAHKMFVEIPQPSVVSWNSLISG------------ 78
                               +  +  AH +F  +P+  +VSWN++I G            
Sbjct: 164 DEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKK 223

Query: 79  -------------------YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
                              Y ++ +  +AL LF E++ + +  D  +  S L+ACG +G+
Sbjct: 224 LFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGA 283

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L +G  IH  I +  +E  + +   L+DMY KCG +++++ VF  M ++D+ +W+++I  
Sbjct: 284 LGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMG 343

Query: 180 SARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMP-----SP 230
            A +G  ELA     ++ +    P+ +++  V++  +  G +++     +SM      SP
Sbjct: 344 LANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSP 403

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEM 258
               +  ++       R+ EA+ L   M
Sbjct: 404 KIEHYGCVVDILGRAGRLQEAMELIKSM 431



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 93/191 (48%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  +  +L A  D+G     + +H  I ++    ++ + T+L+  Y K   + ++ ++
Sbjct: 266 PDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRV 325

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    V +W+++I G    G    AL+ F ++   +I  +  +F   L+AC  +G +
Sbjct: 326 FNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLV 385

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G    + + K Y +   +    C++D+ G+ G +++A+ +   M    D I W +++ 
Sbjct: 386 DEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLG 445

Query: 179 ASARNGNLELA 189
           A     N+E+A
Sbjct: 446 ACRIYKNVEIA 456


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 166/560 (29%), Positives = 294/560 (52%), Gaps = 41/560 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N +V   LL+    +     C  LH  + K G  ++ FV TAL+  Y    ++  A  +F
Sbjct: 135 NPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVF 194

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            +I    +VSW  +++ Y ++  Y ++L LF ++       + ++ + AL +C  L +  
Sbjct: 195 DDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFN 254

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           +G ++H   +K   +  + +   L+++Y K G + DA  +F EM   D+I W+ +IA  A
Sbjct: 255 VGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYA 314

Query: 182 RNGNLELAFGFLHRLPN----PDTISY--------------------------------- 204
           ++   + A     R+      P+  ++                                 
Sbjct: 315 QSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVF 374

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +++  A+ G+IE+++ +   +P  N  +WN+I+ GYV       A++LF  M   D
Sbjct: 375 VSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHD 434

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +   E T+S++L   A L+AL  G+ IHS  IK   +   VVA++L+DMY+KCG++  A 
Sbjct: 435 MQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDAR 494

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
             F  + +++ V+WNAMI GY+ +G   + + LF+ ++   D +P+ +TF+ VL+ACS+ 
Sbjct: 495 LTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHT-DCKPNKLTFVGVLSACSNA 553

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            + + K   +FESM+KDY IKP +EH   M+ L+G+ G    A ++I E+ +    +VWR
Sbjct: 554 GLLY-KGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWR 612

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
           ALL A      +D+ R+ A  V+++E   D  +V+L N+Y + G WD  + +R +M+++ 
Sbjct: 613 ALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKK 672

Query: 503 LRKEAGCSWIEVENVAAHSS 522
           +RKE G SW+E + V  + S
Sbjct: 673 VRKEPGLSWVENQGVVHYFS 692



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/395 (30%), Positives = 201/395 (50%), Gaps = 40/395 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + LHC+ILK G   ++F    L+ FY + NSL DA K+F E+PQ + +S+ +L  GY + 
Sbjct: 55  KHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRD 114

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            ++ +AL+  + + +     + + FT+ L     +    L   +H+ + K        + 
Sbjct: 115 HQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVG 174

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------ 196
             LID Y   G+V+ A  VF ++  KD++SW  ++A  A N   E +    +++      
Sbjct: 175 TALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYK 234

Query: 197 PNPDTIS-----------YN----------------EVINGI------AQFGDIEDAIMI 223
           PN  TIS           +N                ++  GI      A+ G+I DA  +
Sbjct: 235 PNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRL 294

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              MP  +   W+ ++  Y   +R  EAL LF  M+   V  + +TF+++L   A   +L
Sbjct: 295 FEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSL 354

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IHSCV+K GL++++ V++A++D+Y+KCG++E +  +F  L  +N VTWN +I GY
Sbjct: 355 DLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGY 414

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            + GD  + + LF  +    D+QP  VT+ +VL A
Sbjct: 415 VQLGDGERAMNLFTHMLE-HDMQPTEVTYSSVLRA 448



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 159/325 (48%), Gaps = 39/325 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + +   L++   L      + +H   LK  +  ++FV  AL+  Y K   + DA ++
Sbjct: 235 PNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRL 294

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+  ++ W+ +I+ Y QS + ++AL+LF+ + ++ +  + ++F S L AC    SL
Sbjct: 295 FEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSL 354

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IHS ++K+ L   V ++N ++D+Y KCG +E+++ +F E+ D++ ++WN++I   
Sbjct: 355 DLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGY 414

Query: 181 ARNGNLELAFG-FLHRLP--------------------------------------NPDT 201
            + G+ E A   F H L                                       N DT
Sbjct: 415 VQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDT 474

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           +  N +I+  A+ G I DA +    M   +  SWN+++ GY       EAL+LF  MQ  
Sbjct: 475 VVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHT 534

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWG 286
           D   ++ TF  +LS  +    L  G
Sbjct: 535 DCKPNKLTFVGVLSACSNAGLLYKG 559



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 156/325 (48%), Gaps = 37/325 (11%)

Query: 1   PNEYVLFHLLRA-----SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLA 55
           PN +    +L+A     S DLG     +Q+H  +LK G  SNVFVS A+M  Y K   + 
Sbjct: 336 PNNFTFASVLQACASSVSLDLG-----KQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIE 390

Query: 56  DAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACG 115
           ++ K+F E+P  + V+WN++I GYVQ G   +A+NLF  +   ++     +++S L A  
Sbjct: 391 NSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASA 450

Query: 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175
            L +L+ G+ IHS  +K    +  V+AN LIDMY KCG + DA   F +M  +D +SWN+
Sbjct: 451 SLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNA 510

Query: 176 VIAASARNG----NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP--- 228
           +I   + +G     L L     H    P+ +++  V++  +  G +        SM    
Sbjct: 511 MICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDY 570

Query: 229 --SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
              P    +  ++       R  EA+ L GE+  +                   S + W 
Sbjct: 571 DIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQP------------------SVMVWR 612

Query: 287 MLIHSCVIKQGLDASIVVASALLDM 311
            L+ +CVI + +D   V A  +L+M
Sbjct: 613 ALLGACVIHKKVDLGRVCAQHVLEM 637



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 132/277 (47%), Gaps = 24/277 (8%)

Query: 169 DIISWNSVIAASARNGNLELAFGFLH-----RLPNPDTISYNEVINGIAQFGDIEDAIMI 223
           D  S+  ++    RNG   +A   LH     R  + D  + N ++N   Q   ++DA  +
Sbjct: 33  DSHSYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKL 92

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG--LS 281
              MP  N+ S+ ++  GY   ++  +ALH    +  +   ++ + F+T+L  +    L+
Sbjct: 93  FDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLA 152

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L W +  H+CV K G  A   V +AL+D YS  G V++A  +F  +C K++V+W  M+ 
Sbjct: 153 HLCWTL--HACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVA 210

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            YA N    + ++LF Q++ +   +P++ T    L +C           E F      +G
Sbjct: 211 CYAENCFYEESLQLFNQMR-IMGYKPNNFTISGALKSCLGL--------EAFNVGKSVHG 261

Query: 402 --IKPTVEH----CCSMIRLMGQKGEVWRAQRMIREL 432
             +K   +H      +++ L  + GE+  AQR+  E+
Sbjct: 262 CALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEM 298


>gi|326507410|dbj|BAK03098.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 698

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 181/565 (32%), Positives = 289/565 (51%), Gaps = 47/565 (8%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N + L   LR+++ +G      QLH   +K+G   NVF +TAL+  Y K     DA ++F
Sbjct: 100 NTFALGSALRSAAAMGCSALGTQLHSLAVKAGLADNVFSATALLHMYAKCGRTRDACRLF 159

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +P+ + VSWN+L++GYV+SGK   A+ LFVE+ER     D  +F + L       +  
Sbjct: 160 DGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLPDEATFAALLTVVND-STCF 218

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIAAS 180
           L   +H KIVKY    G+++ N  I  Y +CG++ ++  +F E+ D+ D+ISWN+++ A 
Sbjct: 219 LMHQLHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFDEIGDRSDLISWNAMLGAY 278

Query: 181 ARNGNLELAFGFLHRL-----PNPDTISYNEVINGIAQFGD------------------- 216
           A +G    A  F   +       PD  S+  +I+  A+  D                   
Sbjct: 279 ATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISACAEHRDHGGTVIHGLVSKNGFEGVT 338

Query: 217 ------------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
                             +EDA     S+   ++ SWNS+LTGY       +AL  F  M
Sbjct: 339 HVCNALIAMYTRFSENCMMEDAYKCFDSLLLKDTVSWNSMLTGYSQHGLSADALRFFRCM 398

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           QS+++  DEY FS  L   + L+ L  G  IH  VI+ G  ++  V+S+L+ MYSK G +
Sbjct: 399 QSENITTDEYAFSAALRSCSDLALLRLGRQIHGLVIRSGFASNNFVSSSLIFMYSKSGIL 458

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           + A   F    + + V WN+M+ GYA++G    V  LF Q+  ++ +  D +TF+ ++ A
Sbjct: 459 DDAMKSFEEADKSSSVPWNSMMFGYAQHGKAQAVRSLFNQMLELK-VPLDHITFVGLITA 517

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH  +  D+ SE   +M   YGI   +EH    I L G+ G++ +A+ +I  + F    
Sbjct: 518 CSHAGL-VDEGSEILNTMESRYGIPLRMEHYACGIDLYGRAGQLDKAKELIDSMPFEPDA 576

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
           +VW  LL A     ++++A   A+ +++ E      YV+L N+Y+  G W   ++++  M
Sbjct: 577 MVWMTLLGACRVHGNMELASDVASHLLEAEPRQHSTYVLLSNMYSGLGMWSDRAIVQKEM 636

Query: 499 RERGLRKEAGCSWIEVENVAAHSSN 523
           + +GL K  G SWIEV+N   HS N
Sbjct: 637 KNKGLSKVPGWSWIEVKN-EVHSFN 660



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 130/520 (25%), Positives = 220/520 (42%), Gaps = 49/520 (9%)

Query: 26  HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKY 85
           H  +LKSG  S    +  L  +      LA A ++F EIP+    SWNSL++ +V  G +
Sbjct: 23  HATLLKSGVTSPTPWNQLLTAYSVSSPGLAAARRLFDEIPRLDAASWNSLLAAHVSIGAH 82

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
             A  L   +    + A+ ++  SAL +   +G   LG  +HS  VK  L   V  A  L
Sbjct: 83  PAACRLLRAMHERGLAANTFALGSALRSAAAMGCSALGTQLHSLAVKAGLADNVFSATAL 142

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNL------------------E 187
           + MY KCG   DA  +F  M +++ +SWN+++A    +G +                  E
Sbjct: 143 LHMYAKCGRTRDACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLPDE 202

Query: 188 LAFGFLHRLPNPDT--------------------ISYNEVINGIAQFGDIEDAIMILSSM 227
             F  L  + N  T                    I  N  I   +Q G + ++  I   +
Sbjct: 203 ATFAALLTVVNDSTCFLMHQLHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFDEI 262

Query: 228 PSPNS-SSWNSILTGYVNRNRVPEALHLFGE-MQSKDVPMDEYTFSTMLSGIAGLSALTW 285
              +   SWN++L  Y       EA+  F   M++  V  D Y+F++++S  A       
Sbjct: 263 GDRSDLISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISACAEHRD-HG 321

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQ---VEIADSMFRSLCRKNLVTWNAMITG 342
           G +IH  V K G +    V +AL+ MY++  +   +E A   F SL  K+ V+WN+M+TG
Sbjct: 322 GTVIHGLVSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLLLKDTVSWNSMLTG 381

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           Y+++G     +  F  +++  ++  D   F   L +CS  D+   ++      +    G 
Sbjct: 382 YSQHGLSADALRFFRCMQS-ENITTDEYAFSAALRSCS--DLALLRLGRQIHGLVIRSGF 438

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
                   S+I +  + G +  A +   E    S  V W +++            R    
Sbjct: 439 ASNNFVSSSLIFMYSKSGILDDAMKSFEEAD-KSSSVPWNSMMFGYAQHGKAQAVRSLFN 497

Query: 463 EVIKLEGDSDYV-YVMLCNLYTSHGNWDVASVMRNFMRER 501
           ++++L+   D++ +V L    +  G  D  S + N M  R
Sbjct: 498 QMLELKVPLDHITFVGLITACSHAGLVDEGSEILNTMESR 537


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 162/516 (31%), Positives = 288/516 (55%), Gaps = 21/516 (4%)

Query: 19  DTYCQQ--LHCYILKSGFLSN------------VFVSTALMGFYRKINSLADAHKMFVEI 64
           DT+ Q   LH Y  KSG LS+            VF   A++  Y K  ++ D   +F ++
Sbjct: 57  DTFLQNRLLHLYA-KSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQM 115

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
                VS+N++I+G+  +G   +AL  FV ++     +  Y+  S L AC QL  ++ G 
Sbjct: 116 SVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGK 175

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
            IH +IV  SL   V + N L +MY KCG+++ A  +F  M++K+++SWNS+I+   +NG
Sbjct: 176 QIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNG 235

Query: 185 NLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
             E        + +    PD ++ + +++   Q G I++A      +   +   W +++ 
Sbjct: 236 QPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMV 295

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           G     +  +AL LF EM  ++V  D +T S+++S  A L++L  G  +H   +  G+D 
Sbjct: 296 GCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDH 355

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
            ++V+SAL+DMYSKCG+   A  +F+ +  +N+++WN+MI GYA+NG   + + L+E++ 
Sbjct: 356 DLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEM- 414

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
              +L+PD++TF+ VL+AC H  +  ++   YF S++K +G+ PT +H   MI L+G+ G
Sbjct: 415 LHENLKPDNITFVGVLSACMHAGL-VERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAG 473

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
            + +A  +I+ + F    ++W  LLS      D++   ++A  + +L+  +   Y+ML N
Sbjct: 474 YMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSN 533

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +Y + G W   + +R+ M+   ++K A  SWIE++N
Sbjct: 534 IYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDN 569



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 35/225 (15%)

Query: 193 LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGY---------- 242
           LH     DT   N +++  A+ G++ DA  +   M   +  SWN++L+ Y          
Sbjct: 50  LHLYQPTDTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLR 109

Query: 243 -----------VNRNRV----------PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
                      V+ N V           +AL  F  MQ +     +YT  ++L   + L 
Sbjct: 110 AVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLL 169

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            +  G  IH  ++   L  S+ V +AL +MY+KCG ++ A  +F  +  KN+V+WN+MI+
Sbjct: 170 DIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMIS 229

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA---CSHTD 383
           GY +NG      +LF ++++   L PD VT  N+L+A   C + D
Sbjct: 230 GYLQNGQPETCTKLFCEMQS-SGLMPDQVTISNILSAYFQCGYID 273



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 111/234 (47%), Gaps = 5/234 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + +  ++ + + L      Q +H   +  G   ++ VS+AL+  Y K    ADA  +
Sbjct: 320 PDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIV 379

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   +V+SWNS+I GY Q+GK  +AL L+ E+    +  D  +F   L+AC   G +
Sbjct: 380 FKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLV 439

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G      I K + +       +C+I++ G+ G ++ A+ +   M  + + + W+++++
Sbjct: 440 ERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLS 499

Query: 179 ASARN---GNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
               N    N E+A   L  L   +   Y  + N  A  G  +D   + S M +
Sbjct: 500 VCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKN 553


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 169/557 (30%), Positives = 285/557 (51%), Gaps = 75/557 (13%)

Query: 1   PNEYVLFHLLRASS---DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLA-- 55
           P++Y    LL A     DL   ++C QLHC + K G  + + VS AL+  Y K ++    
Sbjct: 157 PDDYSFTSLLSAVGQMHDLAV-SHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVT 215

Query: 56  -DAHKMFVEIPQPSVVSW-------------------------------NSLISGYVQSG 83
            DA K+  E+P+   ++W                               N++ISGYVQSG
Sbjct: 216 RDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSG 275

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK----YSLERGV 139
              +A  LF  +    I  D ++FTS L+AC   G    G ++H + ++    +  E  +
Sbjct: 276 MCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAAL 335

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            + N L+ +Y K G +  A  +F  M  KD++SW                          
Sbjct: 336 PVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSW-------------------------- 369

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                N +++G  + G +++A  I   MP  +  SW  +++GYV+     +AL LF +M+
Sbjct: 370 -----NTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMR 424

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           S+DV   +YT++  ++    L AL  G  +H+ +++ G +AS    +ALL MY++CG V+
Sbjct: 425 SEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVK 484

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F  +   + V+WNAMI+   ++G   + +ELF+Q+   + + PD ++FL +L AC
Sbjct: 485 DARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQM-VAQGIYPDRISFLTILTAC 543

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +H  +  D   +YFESM +D+GI P  +H   +I L+G+ G +  A+ +I+ + F     
Sbjct: 544 NHAGL-VDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPA 602

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W A+LS      D+++   +A ++ K+  + D  Y++L N Y++ G W  A+ +R  MR
Sbjct: 603 IWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMR 662

Query: 500 ERGLRKEAGCSWIEVEN 516
           +RG++KE GCSWIEV N
Sbjct: 663 DRGVKKEPGCSWIEVGN 679



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 197/435 (45%), Gaps = 54/435 (12%)

Query: 41  STALMGFYRKINSLADAHKMFVEIP--QPSVVSWNSLISGYVQSGKYRKALNLFVELERS 98
           +T+L+  Y     L D+   F  +P  +   V  N++IS + ++     A+++F  L  S
Sbjct: 92  ATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLAS 151

Query: 99  E--IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV--IANCLIDMYGKC-- 152
           +  +  D YSFTS L+A GQ+  L +          + L  G V  ++N LI +Y KC  
Sbjct: 152 DDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDA 211

Query: 153 -GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGI 211
            G   DA  V  EM +KD ++W +                               ++ G 
Sbjct: 212 PGVTRDARKVLDEMPEKDELTWTT-------------------------------IVVGH 240

Query: 212 AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271
            + GD+  A      +       WN++++GYV      EA  LF  M SK +P DE+TF+
Sbjct: 241 VRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFT 300

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLD----ASIVVASALLDMYSKCGQVEIADSMFRS 327
           ++LS  A       G  +H   I+   D    A++ V +AL+ +YSK G++ +A  +F S
Sbjct: 301 SLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDS 360

Query: 328 LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387
           +  K++V+WN +++GY  +G L     +F+++    +L     +++ +++   H  +  D
Sbjct: 361 MTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSEL-----SWMVMVSGYVHGGLAED 415

Query: 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL---GFGSYGVVWRAL 444
            +  + +  ++D  +KP        +   G+ G +   +++   L   GF +      AL
Sbjct: 416 ALKLFNQMRSED--VKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNAL 473

Query: 445 LSASGACSDLDVARI 459
           L+    C  +  AR+
Sbjct: 474 LTMYARCGAVKDARL 488


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 163/552 (29%), Positives = 287/552 (51%), Gaps = 41/552 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +++ L  +L+  ++ G     Q +H   ++ G   + F+S  L+  Y K     DA K+F
Sbjct: 329 SKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVF 388

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
           V I  P VVSW+++I+   Q G+ R+A  +F  +  S +  + ++  S ++A   LG L 
Sbjct: 389 VRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLY 448

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G +IH+ + KY  E    + N L+ MY K GSV+D   VF    ++D+ISWN++++   
Sbjct: 449 YGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFH 508

Query: 182 RNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDI-------------------- 217
            N   +      +++     NP+  ++  ++   +   D+                    
Sbjct: 509 DNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDF 568

Query: 218 ---------------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                          EDA  I + +   +  +W  I+ GY    +  +A+  F +MQ + 
Sbjct: 569 VGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREG 628

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V  +E+T ++ LSG + ++ L  G  +HS  IK G    + VASAL+DMY+KCG VE A+
Sbjct: 629 VKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAE 688

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F  L  ++ V+WN +I GY+++G   K ++ FE +     + PD VTF+ VL+ACSH 
Sbjct: 689 VVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTV-PDEVTFIGVLSACSHM 747

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  ++  ++F S++K YGI PT+EH   M+ ++G+ G+    +  I E+   S  ++W 
Sbjct: 748 GL-IEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWE 806

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
            +L A     +++    +A ++ +LE + D  Y++L N++ + G WD  + +R  M  RG
Sbjct: 807 TVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRG 866

Query: 503 LRKEAGCSWIEV 514
           ++KE GCSW+EV
Sbjct: 867 VKKEPGCSWVEV 878



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 210/418 (50%), Gaps = 40/418 (9%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE+     L+A S      + +Q+H   +K G  S++FV +AL+  Y K   +  A ++F
Sbjct: 228 NEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVF 287

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
           + +P+ + VSWN+L++G+ Q G   K LNLF  +  SEI    ++ ++ L  C   G+L+
Sbjct: 288 LCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLR 347

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  +HS  ++   E    I+ CL+DMY KCG   DA+ VF  + D D++SW+++I    
Sbjct: 348 AGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLD 407

Query: 182 RNGNLELAFGFLHRL------PNPDTIS-------------YNEVINGIA---------- 212
           + G    A     R+      PN  T++             Y E I+             
Sbjct: 408 QKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNT 467

Query: 213 ----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                     + G ++D   +  +  + +  SWN++L+G+ +       L +F +M ++ 
Sbjct: 468 VCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEG 527

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
              + YTF ++L   + LS +  G  +H+ ++K  LD +  V +AL+DMY+K   +E A+
Sbjct: 528 FNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAE 587

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           ++F  L +++L  W  ++ GYA++G   K ++ F Q++    ++P+  T  + L+ CS
Sbjct: 588 TIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQR-EGVKPNEFTLASSLSGCS 644



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 199/411 (48%), Gaps = 40/411 (9%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           +LR  +  G     + +H  ++KSG   +  +  +L+  Y K  S   A K+F EIP+  
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           VVSW +LI+G+V  G    A+NLF E+ R  + A+ +++ +AL AC     L+ G  +H+
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHA 253

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
           + +K      + + + L+D+Y KCG +  A  VF  M  ++ +SWN+++   A+ G+ E 
Sbjct: 254 EAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEK 313

Query: 189 AFGFLHRLP----NPDTISYNEVINGIAQFGDIE-------------------------- 218
                 R+     N    + + V+ G A  G++                           
Sbjct: 314 VLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVD 373

Query: 219 ---------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
                    DA+ +   +  P+  SW++I+T    + +  EA  +F  M+   V  +++T
Sbjct: 374 MYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFT 433

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
            ++++S    L  L +G  IH+CV K G +    V +AL+ MY K G V+    +F +  
Sbjct: 434 LASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATT 493

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            ++L++WNA+++G+  N      + +F Q+       P+  TF+++L +CS
Sbjct: 494 NRDLISWNALLSGFHDNETCDTGLRIFNQM-LAEGFNPNMYTFISILRSCS 543



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 186/402 (46%), Gaps = 45/402 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++ L  L+ A++DLG   Y + +H  + K GF  +  V  AL+  Y KI S+ D  ++
Sbjct: 429 PNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRV 488

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F       ++SWN+L+SG+  +      L +F ++       + Y+F S L +C  L  +
Sbjct: 489 FEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDV 548

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  +H++IVK SL+    +   L+DMY K   +EDA  +F  +I +D+ +W  ++A  
Sbjct: 549 DLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGY 608

Query: 181 ARNGNLELAFGFLHRL------PNPDTIS------------------------------- 203
           A++G  E A     ++      PN  T++                               
Sbjct: 609 AQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDM 668

Query: 204 --YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              + +++  A+ G +EDA ++   + S ++ SWN+I+ GY    +  +AL  F  M  +
Sbjct: 669 FVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDE 728

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-QGLDASIVVASALLDMYSKCGQVEI 320
               DE TF  +LS  + +  +  G    + + K  G+  +I   + ++D+  + G+   
Sbjct: 729 GTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHE 788

Query: 321 ADSMFRSL-CRKNLVTWNAMITGYARNGDLT----KVIELFE 357
            +S    +    N++ W  ++     +G++       ++LFE
Sbjct: 789 VESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFE 830



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 109/473 (23%), Positives = 204/473 (43%), Gaps = 81/473 (17%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
           ++  L  C   G L  G AIH +++K  +     + N L+++Y KCGS   A  VFGE+ 
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 167 DKDIISWNSVIAASARNGN---------------------------------LELAFGFL 193
           ++D++SW ++I      G                                  L+L FG  
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 194 HRLPNPDTISYNEVING------IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
                     ++++  G       A+ G++  A  +   MP  N+ SWN++L G+     
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGD 310

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307
             + L+LF  M   ++   ++T ST+L G A    L  G ++HS  I+ G +    ++  
Sbjct: 311 AEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCC 370

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           L+DMYSKCG    A  +F  +   ++V+W+A+IT   + G   +  E+F++++    + P
Sbjct: 371 LVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRH-SGVIP 429

Query: 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV----- 422
           +  T  ++++A   TD+      E   +    YG +     C +++ +  + G V     
Sbjct: 430 NQFTLASLVSAA--TDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCR 487

Query: 423 ------------WRA------------------QRMIRELGFGSYGVVWRALLSASGACS 452
                       W A                   +M+ E GF      + ++L +  + S
Sbjct: 488 VFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAE-GFNPNMYTFISILRSCSSLS 546

Query: 453 DLDVARISAAEVIK--LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           D+D+ +   A+++K  L+G+ D+V   L ++Y  +   + A  + N + +R L
Sbjct: 547 DVDLGKQVHAQIVKNSLDGN-DFVGTALVDMYAKNRFLEDAETIFNRLIKRDL 598



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 10/166 (6%)

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
           LSS   PNS+  N I    V + R+   L         D       +S ML   A    L
Sbjct: 93  LSSPNRPNSTPGNKI-PETVEKKRIWRGLDF-------DSKGRLRQYSGMLRTCASKGDL 144

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH  VIK G++    + ++L+++Y+KCG    A  +F  +  +++V+W A+ITG+
Sbjct: 145 NEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGF 204

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT-DIPFDK 388
              G  +  + LF +++    ++ +  T+   L ACS   D+ F K
Sbjct: 205 VAEGYGSGAVNLFCEMRR-EGVEANEFTYATALKACSMCLDLEFGK 249


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 171/555 (30%), Positives = 294/555 (52%), Gaps = 41/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+ L  +L A + L  + Y  ++H Y++K G+ S+ F + AL+  Y K      A  +
Sbjct: 186 PNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAV 245

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EIP+P +VSWN++I+G V   K   AL L  ++    +    ++ +SAL AC  +G +
Sbjct: 246 FYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLV 305

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +HS ++K  +E    +   LIDMY KCG ++DA  VF  M  KD+I WNS+I+  
Sbjct: 306 KLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGY 365

Query: 181 ARNG---------------NLEL----------------AFGF---LHRLPNPDTISY-- 204
           +  G                LE                 A GF   +H +       Y  
Sbjct: 366 SNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDG 425

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +++   +   +EDA  +    P+ +  ++ S++T Y       EAL ++  MQ +
Sbjct: 426 YVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDR 485

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           D+  D + FS++ +  A LSA   G  IH  V+K GL + +   ++L++MY+KCG ++ A
Sbjct: 486 DIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDA 545

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  + +V+W+AMI G A++G   K ++LF Q+     + P+ +T ++VL+AC+H
Sbjct: 546 SCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLK-NGILPNHITLVSVLSACNH 604

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +   +   +F  M K +GI PT EH   M+ ++G+ G +  A  +++E+ F +   VW
Sbjct: 605 AGL-VTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVW 663

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL A+    ++++ R +A  ++ LE +    +++L N+Y S G WD  + +R  M+  
Sbjct: 664 GALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNS 723

Query: 502 GLRKEAGCSWIEVEN 516
            ++KE G SWIE+++
Sbjct: 724 LVKKEPGMSWIELKD 738



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 187/416 (44%), Gaps = 80/416 (19%)

Query: 45  MGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKAL--------------- 89
           +  Y K      A K+ ++  +P +VSW++LISGYVQ+G+  +AL               
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 90  -------------------------NLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
                                     L  E+  + I  + +S ++ L AC  L     GM
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
            +H  ++K   +     AN L+DMY K G  E AI VF E+   DI+SWN+VIA    + 
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 185 NLELAFGFLHRLPN---------------------------------------PDTISYN 205
             +LA   L ++ +                                       PD+    
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGV 328

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
            +I+  ++ G ++DA M+   MP  +   WNSI++GY N     EA+ LF  M  + +  
Sbjct: 329 GLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEF 388

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           ++ T ST+L   AG  A  +   +H+  IK G      VA++LLD Y KC  +E A  +F
Sbjct: 389 NQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVF 448

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
                ++LV + +MIT Y++ G   + ++++ +++  RD++PD+  F ++  AC++
Sbjct: 449 EVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQD-RDIKPDAFIFSSLFNACAN 503



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 158/334 (47%), Gaps = 39/334 (11%)

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR 182
           GMAIH++I++  L          +++Y KC     A  +  +  + D++SW+++I+   +
Sbjct: 69  GMAIHARIIRLGLLGLRNRL---VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQ 125

Query: 183 NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTG- 241
           NG  E A            ++Y E              + +L +    N  +++S+L G 
Sbjct: 126 NGRGEEAL-----------LTYYE--------------MYLLGA--KGNEFTFSSVLKGC 158

Query: 242 YVNRN-RVPEALH---LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
            + RN  + + +H   L  EM S  +  +E++ ST+L+  AGL    +GM +H  +IK G
Sbjct: 159 SLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLG 218

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
            D+    A+ALLDMY+K G  E A ++F  + + ++V+WNA+I G   +      ++L  
Sbjct: 219 YDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLG 278

Query: 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417
           ++ + R + P   T  + L AC+   I   K+     S      ++P       +I +  
Sbjct: 279 KMGSYR-VAPSMFTLSSALKACA--AIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYS 335

Query: 418 QKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC 451
           + G +  A RM+ +L      +VW +++S    C
Sbjct: 336 KCGLLQDA-RMVFDLMPXKDVIVWNSIISGYSNC 368


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 163/556 (29%), Positives = 287/556 (51%), Gaps = 50/556 (8%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N+++   L+ A++ LG + Y + +H  + K GF S++ +S A +  Y K  S+ +  + F
Sbjct: 89  NQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFF 148

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +   ++ S N+L+SG+  +    +   + ++L       + Y+F S L  C   G L 
Sbjct: 149 KAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLN 208

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G AIH +++K  +     + N L+++Y KCGS   A  VFGE+ ++D++SW ++I    
Sbjct: 209 EGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFV 268

Query: 182 RNG--------NLELAFGFLHRLPNPDTISYNEVINGIAQFGDI---------------- 217
             G        N  LA GF     NP+  ++  ++   +   D+                
Sbjct: 269 AEGYGSGLRIFNQMLAEGF-----NPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLD 323

Query: 218 -------------------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
                              EDA  I + +   +  +W  I+ GY    +  +A+  F +M
Sbjct: 324 GNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQM 383

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           Q + V  +E+T ++ LSG + ++ L  G  +HS  IK G    + VASAL+DMY+KCG V
Sbjct: 384 QREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCV 443

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           E A+ +F  L  ++ V+WN +I GY+++G   K ++ FE +     + PD VTF+ VL+A
Sbjct: 444 EDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTV-PDEVTFIGVLSA 502

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH  +  ++  ++F S++K YGI PT+EH   M+ ++G+ G+    +  I E+   S  
Sbjct: 503 CSHMGL-IEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNV 561

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
           ++W  +L A     +++    +A ++ +LE + D  Y++L N++ + G WD  + +R  M
Sbjct: 562 LIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALM 621

Query: 499 RERGLRKEAGCSWIEV 514
             RG++KE GCSW+EV
Sbjct: 622 STRGVKKEPGCSWVEV 637



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 185/391 (47%), Gaps = 41/391 (10%)

Query: 29  ILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKA 88
           ++K+G   +  + ++L+  Y K  SL  A ++  E+P   V  WN  +S        ++A
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 89  LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
           + LF  +  + I  + + F S ++A   LG    G +IH+ + KY  E  ++I+N  + M
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTM 134

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWN---------------------------------- 174
           Y K  SVE+    F  M+ +++ S N                                  
Sbjct: 135 YMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTF 194

Query: 175 -SVIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
            S++   A  G+L        ++     NPD+  +N ++N  A+ G    A  +   +P 
Sbjct: 195 ISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPE 254

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            +  SW +++TG+V        L +F +M ++    + YTF ++L   + LS +  G  +
Sbjct: 255 RDVVSWTALITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQV 313

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H+ ++K  LD +  V +AL+DMY+K   +E A+++F  L +++L  W  ++ GYA++G  
Sbjct: 314 HAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQG 373

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            K ++ F Q++    ++P+  T  + L+ CS
Sbjct: 374 EKAVKCFIQMQR-EGVKPNEFTLASSLSGCS 403



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 184/402 (45%), Gaps = 46/402 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y    +L+  +  G     + +H  ++KSG   +  +  +L+  Y K  S   A K+
Sbjct: 189 PNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKV 248

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EIP+  VVSW +LI+G+V  G Y   L +F ++       + Y+F S L +C  L  +
Sbjct: 249 FGEIPERDVVSWTALITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDV 307

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  +H++IVK SL+    +   L+DMY K   +EDA  +F  +I +D+ +W  ++A  
Sbjct: 308 DLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGY 367

Query: 181 ARNGNLELAFGFLHRL------PNPDTIS------------------------------- 203
           A++G  E A     ++      PN  T++                               
Sbjct: 368 AQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDM 427

Query: 204 --YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              + +++  A+ G +EDA ++   + S ++ SWN+I+ GY    +  +AL  F  M  +
Sbjct: 428 FVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDE 487

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-QGLDASIVVASALLDMYSKCGQVEI 320
               DE TF  +LS  + +  +  G    + + K  G+  +I   + ++D+  + G+   
Sbjct: 488 GTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHE 547

Query: 321 ADSMFRSL-CRKNLVTWNAMITGYARNGDLT----KVIELFE 357
            +S    +    N++ W  ++     +G++       ++LFE
Sbjct: 548 VESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFE 589



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 157/339 (46%), Gaps = 37/339 (10%)

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
           PD+  ++ ++N   +   ++ A  +L  MP  +   WN  L+   +   + EA+ LF  M
Sbjct: 22  PDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLM 81

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           +   + ++++ F++++S  A L    +G  IH+CV K G ++ I++++A + MY K   V
Sbjct: 82  RHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSV 141

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           E     F+++  +NL + N +++G+       +   +  QL  V   +P+  TF+++L  
Sbjct: 142 ENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQL-LVEGFEPNMYTFISILKT 200

Query: 379 C-SHTDIPFDKV-------------SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV-W 423
           C S  D+   K              S  + S+   Y    +  + C +   + ++  V W
Sbjct: 201 CASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSW 260

Query: 424 RA-----------------QRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
            A                  +M+ E GF      + ++L +  + SD+D+ +   A+++K
Sbjct: 261 TALITGFVAEGYGSGLRIFNQMLAE-GFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVK 319

Query: 467 --LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
             L+G+ D+V   L ++Y  +   + A  + N + +R L
Sbjct: 320 NSLDGN-DFVGTALVDMYAKNRFLEDAETIFNRLIKRDL 357


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 167/561 (29%), Positives = 297/561 (52%), Gaps = 47/561 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSG-FLSNVFVSTALMGFYRKIN-SLADAH 58
           PNEY    + RA S+    +  + +  ++LK+G F S+V V  AL+  + K N  L  A+
Sbjct: 40  PNEYCFTGVFRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAY 99

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           K+F  +P  +VV+W  +I+ + Q G  R A++LF+++  S    D ++ +  ++AC ++G
Sbjct: 100 KVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMG 159

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC---GSVEDAIGVFGEMIDKDIISWNS 175
            L LG   H  ++K  L+  V +   L+DMY KC   GSV+DA  VF  M   +++SW +
Sbjct: 160 LLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTA 219

Query: 176 VIAASARNGN-----LELAFGFLHRLPNPDTISYNEVINGIAQFGDI------------- 217
           +I    ++G      +EL    +     P+  +++ V+   A   DI             
Sbjct: 220 IITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKM 279

Query: 218 ----------------------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
                                 E+A      +   N  S+N+I+  Y       EA  LF
Sbjct: 280 RLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELF 339

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
            E++     ++ +TF+++LSG + + A+  G  IHS ++K G  +++ + +AL+ MYS+C
Sbjct: 340 NEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRC 399

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G +E A  +F  +   N+++W +MITG+A++G  T+ +E F ++     + P+ VT++ V
Sbjct: 400 GNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEA-GVSPNEVTYIAV 458

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L+ACSH  +  + + ++F+SM  ++GI P +EH   ++ L+G+ G +  A  ++  + F 
Sbjct: 459 LSACSHVGLISEGL-KHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFK 517

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
           +  +V R  L A     ++D+ + +A  +++ +      Y++L NL+ S G W+  + +R
Sbjct: 518 ADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIR 577

Query: 496 NFMRERGLRKEAGCSWIEVEN 516
             M+ER L KEAGCSWIEVEN
Sbjct: 578 KKMKERNLTKEAGCSWIEVEN 598



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 196/427 (45%), Gaps = 49/427 (11%)

Query: 66  QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA 125
           +  +VSW++LIS Y  + K  +A++ F ++     Y + Y FT    AC    ++ LG  
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 126 IHSKIVKYS-LERGVVIANCLIDMYGKC-GSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
           I   ++K    E  V +   LIDM+ K  G +E A  VF  M D+++++W  +I    + 
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 184 G----NLELAFGFLHRLPNPDTISYNEVINGIAQF------------------------- 214
           G     ++L    +     PD  + + V++  A+                          
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVG 183

Query: 215 -------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP-EALHLFGEMQS 260
                        G ++DA  +   MP  N  SW +I+TGYV       EA+ LF EM  
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQ 243

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             V  + +TFS++L   A LS +  G  +++ V+K  L +   V ++L+ MYS+CG +E 
Sbjct: 244 GQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMEN 303

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A   F  L  KNLV++N ++  YA++ +  +  ELF +++       ++ TF ++L+  S
Sbjct: 304 ARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGA-GTGVNAFTFASLLSGAS 362

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
              I      E   S     G K  +  C ++I +  + G +  A ++  E+G G+  + 
Sbjct: 363 --SIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNV-IS 419

Query: 441 WRALLSA 447
           W ++++ 
Sbjct: 420 WTSMITG 426



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 108/226 (47%), Gaps = 12/226 (5%)

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           SW+++++ Y N  +  EA+  F +M       +EY F+ +    +    ++ G +I   +
Sbjct: 9   SWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFL 68

Query: 294 IKQG-LDASIVVASALLDMYSKC-GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
           +K G  ++ + V  AL+DM+ K  G +E A  +F  +  +N+VTW  MIT + + G    
Sbjct: 69  LKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRD 128

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411
            ++LF  +  +    PD  T   V++AC+  ++    +   F  +    G+   V   CS
Sbjct: 129 AVDLFLDM-VLSGYVPDRFTLSGVVSACA--EMGLLSLGRQFHCLVMKSGLDLDVCVGCS 185

Query: 412 MIRLMGQ---KGEVWRAQRMIRELGFGSYGVVWRALLSA---SGAC 451
           ++ +  +    G V  A+++   +   +  + W A+++    SG C
Sbjct: 186 LVDMYAKCVADGSVDDARKVFDRMPVHNV-MSWTAIITGYVQSGGC 230


>gi|225445472|ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial [Vitis vinifera]
          Length = 773

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 175/528 (33%), Positives = 286/528 (54%), Gaps = 40/528 (7%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QLH  ILK G    VFV  AL+  Y +   L +A ++F E+    +VSWN+++SGY Q G
Sbjct: 197 QLHSRILKCGLDCEVFVGNALITMYSRCCRLVEARRVFDEMRNKDLVSWNAMLSGYAQEG 256

Query: 84  KY-RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
               +A+ +F+E+ +  +  D  SFT A++ACG     +LG  IHS  VK   +  V + 
Sbjct: 257 NSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVC 316

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA-----------RNG---NLEL 188
           N LI  Y KC  +EDA  VF  +ID++++SW ++I+ S            R+G   N   
Sbjct: 317 NVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMISISEEDATSLFNEMRRDGVYPNDVT 376

Query: 189 AFGFLHRLPNPDTISYNEVINGI--------------------AQFGDIEDAIMILSSMP 228
             G +H +   + +   ++I+G+                    A+F  + D++ +   + 
Sbjct: 377 FVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKVFEELN 436

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW--G 286
                SWNS+++GY       EAL  F     +  P +E+TF ++LS IA   A++   G
Sbjct: 437 YREIISWNSLISGYAQNGLWQEALQTFLSALMESRP-NEFTFGSVLSSIASAEAISMRHG 495

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
              HS ++K GL+ + +V+SALLDMY+K G +  +  +F     KN V W A+I+ +AR+
Sbjct: 496 QRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLGVFSETPLKNEVAWTAIISAHARH 555

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           GD   V+ LF+ ++    ++PDS+TFL V+ AC    +  D   + F SM KD+ I+P+ 
Sbjct: 556 GDYEAVMNLFKDMER-EGVKPDSITFLAVITACGRKGM-VDTGYQLFNSMVKDHLIEPSP 613

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
           EH  SM+ ++G+ G +  A+  + ++  G+   V ++LL A     ++D+A+  A ++I+
Sbjct: 614 EHYSSMVDMLGRAGRLKEAEEFVGQIPGGAGLSVLQSLLGACRIHGNVDMAKRVADDLIE 673

Query: 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           +E      YV++ NLY   G W+  + +R  MRERG+RKE G SW++V
Sbjct: 674 MEPMGSGSYVLMSNLYAEKGEWEKVAKIRKGMRERGVRKEIGFSWVDV 721



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/472 (25%), Positives = 225/472 (47%), Gaps = 51/472 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H + + SGF+S+V V  +LM  Y K      A  +F  +  P +VSWN+++SG+ +S 
Sbjct: 99  QIHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGFQRSD 158

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
               ALN  + +  + +  DA + T+ LA C        G  +HS+I+K  L+  V + N
Sbjct: 159 D---ALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGN 215

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN--LELAFGFLHRLPNP-- 199
            LI MY +C  + +A  VF EM +KD++SWN++++  A+ GN  LE    FL  L     
Sbjct: 216 ALITMYSRCCRLVEARRVFDEMRNKDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEGMK 275

Query: 200 -DTISY-----------------------------------NEVINGIAQFGDIEDAIMI 223
            D +S+                                   N +I+  ++  DIEDA ++
Sbjct: 276 LDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLV 335

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
             S+   N  SW ++++         +A  LF EM+   V  ++ TF  ++  I   + +
Sbjct: 336 FESIIDRNVVSWTTMIS-----ISEEDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLV 390

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G +IH   +K    + + V+++L+ MY+K   +  +  +F  L  + +++WN++I+GY
Sbjct: 391 EEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGY 450

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A+NG   + ++ F  L  + + +P+  TF +VL++ +  +    +  +   S     G+ 
Sbjct: 451 AQNGLWQEALQTF--LSALMESRPNEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLN 508

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLD 455
                  +++ +  ++G +  +  +  E    +  V W A++SA     D +
Sbjct: 509 TNPIVSSALLDMYAKRGSICESLGVFSETPLKNE-VAWTAIISAHARHGDYE 559



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 163/324 (50%), Gaps = 34/324 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+     L+ A +        Q +H   +K+ FLS + VS +L+  Y K  S++D+ K+
Sbjct: 372 PNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKV 431

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALA--ACGQLG 118
           F E+    ++SWNSLISGY Q+G +++AL  F+     E   + ++F S L+  A  +  
Sbjct: 432 FEELNYREIISWNSLISGYAQNGLWQEALQTFLS-ALMESRPNEFTFGSVLSSIASAEAI 490

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           S++ G   HS I+K  L    ++++ L+DMY K GS+ +++GVF E   K+ ++W ++I+
Sbjct: 491 SMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLGVFSETPLKNEVAWTAIIS 550

Query: 179 ASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSM------- 227
           A AR+G+ E        +      PD+I++  VI    + G ++    + +SM       
Sbjct: 551 AHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKGMVDTGYQLFNSMVKDHLIE 610

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
           PSP    ++S++       R+ EA    G+                + G AGLS L    
Sbjct: 611 PSPE--HYSSMVDMLGRAGRLKEAEEFVGQ----------------IPGGAGLSVLQ--S 650

Query: 288 LIHSCVIKQGLDASIVVASALLDM 311
           L+ +C I   +D +  VA  L++M
Sbjct: 651 LLGACRIHGNVDMAKRVADDLIEM 674



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 156/341 (45%), Gaps = 46/341 (13%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H   +K G+ ++V V   L+  Y K   + DA  +F  I   +VVSW ++IS   + 
Sbjct: 298 RQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMISISEED 357

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
                A +LF E+ R  +Y +  +F   + A      ++ G  IH   VK S    + ++
Sbjct: 358 -----ATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVS 412

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF-GFLHRL--PNP 199
           N LI MY K  S+ D++ VF E+  ++IISWNS+I+  A+NG  + A   FL  L    P
Sbjct: 413 NSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALMESRP 472

Query: 200 DTISYNEVINGI-------------------------------------AQFGDIEDAIM 222
           +  ++  V++ I                                     A+ G I +++ 
Sbjct: 473 NEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLG 532

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           + S  P  N  +W +I++ +         ++LF +M+ + V  D  TF  +++       
Sbjct: 533 VFSETPLKNEVAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKGM 592

Query: 283 LTWGMLIHSCVIKQGL-DASIVVASALLDMYSKCGQVEIAD 322
           +  G  + + ++K  L + S    S+++DM  + G+++ A+
Sbjct: 593 VDTGYQLFNSMVKDHLIEPSPEHYSSMVDMLGRAGRLKEAE 633



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 167/375 (44%), Gaps = 45/375 (12%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           ++  +S    H+   + PQ ++ S N  +   ++     +AL+LF +  +     +    
Sbjct: 22  FKYFHSSKHVHQPLDQSPQTTIASLNRSMLTALRRNLSLEALDLFKKQLQWGFVGNIDQV 81

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
           T A+      G  +LG  IH+  +       V + N L++MY K G  + A+ VF  + +
Sbjct: 82  TVAIVLKACCGDSKLGCQIHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLNN 141

Query: 168 KDIISWNSVIAASARNGN-LELA-----------------------------FGF-LHRL 196
            DI+SWN+V++   R+ + L  A                             FGF LH  
Sbjct: 142 PDIVSWNTVLSGFQRSDDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSR 201

Query: 197 P-----NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR-NRVPE 250
                 + +    N +I   ++   + +A  +   M + +  SWN++L+GY    N   E
Sbjct: 202 ILKCGLDCEVFVGNALITMYSRCCRLVEARRVFDEMRNKDLVSWNAMLSGYAQEGNSGLE 261

Query: 251 ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLD 310
           A+ +F EM  + + +D  +F+  +S          G  IHS  +K G D  + V + L+ 
Sbjct: 262 AILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLIS 321

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPDS 369
            YSKC  +E A  +F S+  +N+V+W  MI+    +        LF +++  RD + P+ 
Sbjct: 322 TYSKCEDIEDAKLVFESIIDRNVVSWTTMISISEEDA-----TSLFNEMR--RDGVYPND 374

Query: 370 VTFLNVLAACSHTDI 384
           VTF+ ++ A +  ++
Sbjct: 375 VTFVGLIHAITMKNL 389


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 161/514 (31%), Positives = 268/514 (52%), Gaps = 33/514 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+EY    LL+  +        ++LH +I+K GF SNVFV  AL+  Y     ++ A  +
Sbjct: 117 PDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGV 176

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +  VV+WN +ISGY +S ++ +++ LF E+ER  +   + +  S L+AC +L  L
Sbjct: 177 FDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDL 236

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +G  +H  +    +E   V+ N LIDMY  CG                           
Sbjct: 237 NVGKRVHRYVKDLKIEPVRVLENALIDMYAACG--------------------------- 269

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
               +++ A G    + + D IS+  ++ G    G +  A      MP  +  SW +++ 
Sbjct: 270 ----DMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMID 325

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GY+  NR  E L LF EMQ+ ++  DE+T  ++L+  A L AL  G  I + + K  +  
Sbjct: 326 GYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKI 385

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
              V +AL+DMY  CG VE A  +F ++  ++ ++W A+I G A NG   + +++F Q+ 
Sbjct: 386 DSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQML 445

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
               + PD VT + VL AC+H+ +  DK  ++F  MT  +GI+P V H   M+ L+G+ G
Sbjct: 446 KA-SITPDEVTCIGVLCACTHSGM-VDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAG 503

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
            +  A  +I+ +      +VW +LL A     D ++A ++A ++++LE ++  VYV+LCN
Sbjct: 504 HLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCN 563

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           +Y +   W+    +R  M +RG++K  GCS IE+
Sbjct: 564 IYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEM 597



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 121/245 (49%), Gaps = 35/245 (14%)

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
           + GD+E A M+  +MP PN   WN+++ GY        A+ ++ EM  + V  DEYT+  
Sbjct: 65  ELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPF 124

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332
           +L      +A+  G  +H  ++K G  +++ V +AL+ +YS  G+V +A  +F    + +
Sbjct: 125 LLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGD 184

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           +VTWN MI+GY R+    + ++LF++++ +R L P S+T ++VL+ACS            
Sbjct: 185 VVTWNVMISGYNRSKQFDESMKLFDEMERMRVL-PSSITLVSVLSACSK----------- 232

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
                KD  +                     R  R +++L      V+  AL+    AC 
Sbjct: 233 ----LKDLNVGK-------------------RVHRYVKDLKIEPVRVLENALIDMYAACG 269

Query: 453 DLDVA 457
           D+D A
Sbjct: 270 DMDTA 274


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 162/553 (29%), Positives = 286/553 (51%), Gaps = 41/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +L A S      + +++H  ++++G  ++  V  AL+  Y K  S+ DA ++
Sbjct: 127 PDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRV 186

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     VSW +L   Y +SG   ++L  +  + +  +     ++ + L+ACG L +L
Sbjct: 187 FDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAAL 246

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH+ IV+      V ++  L  MY KCG+ +DA  VF  +  +D+I+WN++I   
Sbjct: 247 EKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGF 306

Query: 181 ARNGNLELAFGFLHRLPN----PDTISY-------------------------------- 204
             +G LE A G  HR+      PD  +Y                                
Sbjct: 307 VDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDV 366

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +IN  ++ G ++DA  +   MP  +  SW ++L  Y + ++V E+   F +M  +
Sbjct: 367 RFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQ 426

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  ++ T+  +L   +   AL WG  IH+ V+K GL A + V +AL+ MY KCG VE A
Sbjct: 427 GVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDA 486

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  +++VTWN +I G  +NG   + ++ +E +K+   ++P++ TF+NVL+AC  
Sbjct: 487 IRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKS-EGMRPNAATFVNVLSACRV 545

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
            ++  ++    F  M+KDYGI PT +H   M+ ++ + G +  A+ +I  +       +W
Sbjct: 546 CNL-VEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMW 604

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL+A     ++++   +A   +KLE  +  +YV L  +Y + G W   + +R FM+ER
Sbjct: 605 GALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKER 664

Query: 502 GLRKEAGCSWIEV 514
           G++KE G SWIE+
Sbjct: 665 GVKKEPGRSWIEI 677



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 196/400 (49%), Gaps = 44/400 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H +IL+ G   NV+++  L+  Y    S+ +A ++F +    SVVSWN +ISGY   
Sbjct: 48  KQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHR 107

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G  ++A NLF  +++  +  D ++F S L+AC     L  G  IH ++++  L     + 
Sbjct: 108 GLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVG 167

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLPN 198
           N LI MY KCGSV DA  VF  M  +D +SW ++  A A +G    +L+     L     
Sbjct: 168 NALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVR 227

Query: 199 PDTISYNEVINGIAQF-----------------------------------GDIEDAIMI 223
           P  I+Y  V++                                        G  +DA  +
Sbjct: 228 PSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREV 287

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +   +  +WN+++ G+V+  ++ EA   F  M  + V  D  T++T+LS  A    L
Sbjct: 288 FECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGL 347

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH+   K GL + +   +AL++MYSK G ++ A  +F  + ++++V+W  ++  Y
Sbjct: 348 ARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRY 407

Query: 344 ARNGDLTKVIELFEQLKTV--RDLQPDSVTFLNVLAACSH 381
           A   D  +V+E F   K +  + ++ + +T++ VL ACS+
Sbjct: 408 A---DCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSN 444



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 145/326 (44%), Gaps = 42/326 (12%)

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           L R     D+Y +   L +C +   L +G  +H  I++  ++  V I N L+ +Y  CGS
Sbjct: 19  LHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGS 78

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL-----HRLPNPDTISY----- 204
           V +A  +F +  +K ++SWN +I+  A  G  + AF         RL  PD  ++     
Sbjct: 79  VNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERL-EPDKFTFVSILS 137

Query: 205 ------------------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSS 234
                                         N +I+  A+ G + DA  +  +M S +  S
Sbjct: 138 ACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVS 197

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
           W ++   Y       E+L  +  M  + V     T+  +LS    L+AL  G  IH+ ++
Sbjct: 198 WTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIV 257

Query: 295 KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
           +    + + V++AL  MY KCG  + A  +F  L  ++++ WN MI G+  +G L +   
Sbjct: 258 ESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHG 317

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACS 380
            F ++     + PD  T+  VL+AC+
Sbjct: 318 TFHRM-LEEGVAPDRATYTTVLSACA 342


>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
          Length = 493

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 153/457 (33%), Positives = 266/457 (58%), Gaps = 7/457 (1%)

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
           +P+ +VVSW S+I+GY Q+G+   AL  + ++ +S +  D ++F S + AC  LG + LG
Sbjct: 1   MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLG 60

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
             +H+ ++K      ++  N LI MY K   + DA+ VF  M  +D+ISW S+IA  ++ 
Sbjct: 61  RQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQL 120

Query: 184 G-NLELAFGFLHRLPN--PDTISYNEVINGIAQFGDIEDAIMILSSMP-SPNSSSWNSIL 239
           G  LE    F   L    PD +++N +I G A +G++ DAI     M  + +  SWN+IL
Sbjct: 121 GYELEALCYFKEMLHQGRPDLVAWNAIIAGFA-YGELRDAIFFFEEMRCNADLVSWNAIL 179

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           T  +  ++  E   L   M       D  T + +L   A   ++  G  +H   +K GL+
Sbjct: 180 TACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLN 239

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
               V + L+D+Y+KCG ++ A  +F S+   ++V+W+++I GYA+ G   + ++LF+ +
Sbjct: 240 CDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTM 299

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           + + D++P+ VTF+ VL ACSH  +  ++  + + +M K++GI PT EHC  M+ L+ + 
Sbjct: 300 RRL-DVKPNHVTFVGVLTACSHVGL-VEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARA 357

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G +  A+  I ++ F    VVW+ LL+A     ++DV + +A  ++K++  +   +V+LC
Sbjct: 358 GCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLC 417

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           N+Y S GNW+  + +R+ M++RG+RK  G SWIEV++
Sbjct: 418 NIYASKGNWEDVARLRSLMKQRGVRKVPGQSWIEVKD 454



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 103/191 (53%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L ++L AS++        Q+HCY LK+G   +  V+  L+  Y K  SL  AHK+
Sbjct: 205 PDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKI 264

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +  P VVSW+SLI GY Q G   +AL LF  + R ++  +  +F   L AC  +G +
Sbjct: 265 FDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLV 324

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G  ++  + K + +       +C++D+  + G + +A G   +M  D DI+ W +++A
Sbjct: 325 EEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLA 384

Query: 179 ASARNGNLELA 189
           A   +GN+++ 
Sbjct: 385 ACKTHGNVDVG 395



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 152/393 (38%), Gaps = 108/393 (27%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +++A S LG     +QLH ++LKS F +++    AL+  Y K N + DA  +
Sbjct: 39  PDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDV 98

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL------------------------- 95
           F  +    ++SW S+I+G+ Q G   +AL  F E+                         
Sbjct: 99  FSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGRPDLVAWNAIIAGFAYGELRD 158

Query: 96  -----ERSEIYADAYSFTSALAAC-----------------------------------G 115
                E     AD  S+ + L AC                                    
Sbjct: 159 AIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASA 218

Query: 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175
           +  S+++G  +H   +K  L     + N LID+Y KCGS++ A  +F  MI+ D++SW+S
Sbjct: 219 ETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSS 278

Query: 176 VIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP----SPN 231
           +I                                G AQFG  E+A+ +  +M      PN
Sbjct: 279 LIL-------------------------------GYAQFGYGEEALKLFKTMRRLDVKPN 307

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSK--DVPMDEYTFSTMLSGIAGLSALTWGM-L 288
             ++  +LT   +   V E   L+G M+ +    P  E+  S M+  +A    L      
Sbjct: 308 HVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHC-SCMVDLLARAGCLNEAEGF 366

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           IH    +   D  IVV   LL      G V++ 
Sbjct: 367 IH----QMAFDPDIVVWKTLLAACKTHGNVDVG 395


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 165/533 (30%), Positives = 276/533 (51%), Gaps = 41/533 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH + +K+ F S+  V TA++  Y K NSL DA + F  +P  +V + N+++ G V++
Sbjct: 270 RQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRA 329

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   +A+ LF  + RS I  D  S +   +AC +      G  +H   +K   +  + + 
Sbjct: 330 GLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVN 389

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE---LAFGFLHRLP-N 198
           N ++D+YGKC ++ +A  +F  M  KD +SWN++IAA  +NG+ +   L F  + R    
Sbjct: 390 NAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMK 449

Query: 199 PDTISYNEVINGIAQF-----------------------------------GDIEDAIMI 223
           PD  +Y  V+   A                                     G I++A  +
Sbjct: 450 PDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKL 509

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +      SWN+IL+G+       EA   F EM    +  D +TF+T+L   A L+ +
Sbjct: 510 HDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATI 569

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH  +IKQ +     ++S L+DMY+KCG +  +  +F  + +++ V+WNAMI GY
Sbjct: 570 ELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGY 629

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A +G   + + +FE+++   ++ P+  TF+ VL ACSH  + FD    YF  MT  Y ++
Sbjct: 630 ALHGLGVEALRMFERMQK-ENVVPNHATFVAVLRACSHVGL-FDDGCRYFHLMTTHYKLE 687

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           P +EH   M+ ++G+      A + I  + F +  V+W+ LLS      D+++A ++A+ 
Sbjct: 688 PQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASN 747

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           V+ L+ D   VY++L N+Y   G W   S  R  +++  L+KE GCSWIEV++
Sbjct: 748 VLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQS 800



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 199/425 (46%), Gaps = 50/425 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      LL++ S L   +   Q+H   +K+G   +V   +AL+  Y K  SL DA   
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 206

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+ + VSW + I+G VQ+ +Y + L LF+E++R  +     S+ SA  +C  +  L
Sbjct: 207 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 266

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED----------------------- 157
             G  +H+  +K       V+   ++D+Y K  S+ D                       
Sbjct: 267 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 326

Query: 158 --------AIGVFGEMIDK----DIISWNSVIAASARNGN---------LELAFGFLHRL 196
                   A+G+F  MI      D++S + V +A A             L +  GF    
Sbjct: 327 VRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGF---- 382

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
            + D    N V++   +   + +A +I   M   +S SWN+I+          + +  F 
Sbjct: 383 -DVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFN 441

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           EM    +  D++T+ ++L   A L +L +G+++H  VIK GL +   VAS ++DMY KCG
Sbjct: 442 EMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCG 501

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            ++ A  +   +  + +V+WNA+++G++ N +  +  + F ++  +  L+PD  TF  VL
Sbjct: 502 IIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDM-GLKPDHFTFATVL 560

Query: 377 AACSH 381
             C++
Sbjct: 561 DTCAN 565



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 205/445 (46%), Gaps = 55/445 (12%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           Y     ++ A  +F  +P P VVSWN+L+SGY Q G ++++++LFVE+ R  +  D  +F
Sbjct: 93  YSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTF 152

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
              L +C  L  L LG+ +H+  VK  LE  V   + L+DMYGKC S++DA+  F  M +
Sbjct: 153 AVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPE 212

Query: 168 KDIISWNSVIAASARNGN----LEL----------------AFGF--------------- 192
           ++ +SW + IA   +N      LEL                A  F               
Sbjct: 213 RNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQL 272

Query: 193 -LHRLPNP---DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV 248
             H + N    D +    +++  A+   + DA      +P+    + N+++ G V     
Sbjct: 273 HAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLG 332

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
            EA+ LF  M    +  D  + S + S  A       G  +H   IK G D  I V +A+
Sbjct: 333 IEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAV 392

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           LD+Y KC  +  A  +F+ + +K+ V+WNA+I    +NG     I  F ++     ++PD
Sbjct: 393 LDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRF-GMKPD 451

Query: 369 SVTFLNVLAACS------HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422
             T+ +VL AC+      +  +  DKV +    +  D  +  TV      + +  + G +
Sbjct: 452 DFTYGSVLKACAALRSLEYGLMVHDKVIK--SGLGSDAFVASTV------VDMYCKCGII 503

Query: 423 WRAQRMIRELGFGSYGVVWRALLSA 447
             AQ++   +G G   V W A+LS 
Sbjct: 504 DEAQKLHDRIG-GQQVVSWNAILSG 527



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 93/165 (56%)

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           +P  DT+S+N ++   +  GDI  A+ +   MP P+  SWN++++GY  R    E++ LF
Sbjct: 78  MPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLF 137

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
            EM  + V  D  TF+ +L   + L  L+ G+ +H+  +K GL+  +   SAL+DMY KC
Sbjct: 138 VEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKC 197

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
             ++ A   F  +  +N V+W A I G  +N    + +ELF +++
Sbjct: 198 RSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQ 242



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 150/319 (47%), Gaps = 29/319 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +L+A + L    Y   +H  ++KSG  S+ FV++ ++  Y K   + +A K+
Sbjct: 450 PDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKL 509

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
              I    VVSWN+++SG+  + +  +A   F E+    +  D ++F + L  C  L ++
Sbjct: 510 HDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATI 569

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IH +I+K  +     I++ L+DMY KCG + D++ VF ++  +D +SWN++I   
Sbjct: 570 ELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGY 629

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
           A +G    A     R+      P+  ++  V+   +  G  +D       M +     P 
Sbjct: 630 ALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQ 689

Query: 232 SSSWNSILTGYVNRNRVP-EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
              + + +   + R++ P EA+     M  +                    A+ W  L+ 
Sbjct: 690 LEHF-ACMVDILGRSKGPQEAVKFINSMPFQ------------------ADAVIWKTLLS 730

Query: 291 SCVIKQGLDASIVVASALL 309
            C I+Q ++ + + AS +L
Sbjct: 731 ICKIRQDVEIAELAASNVL 749



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 7/112 (6%)

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           ++  G   +  V++ LL MY++C     A  +F ++ R++ V+WN M+T Y+  GD++  
Sbjct: 43  MVVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTA 102

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           + LF+ +       PD V++ N L +       F +  + F  M +  G+ P
Sbjct: 103 VALFDGMP-----DPDVVSW-NALVSGYCQRGMFQESVDLFVEMAR-RGVSP 147


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 165/533 (30%), Positives = 276/533 (51%), Gaps = 41/533 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH + +K+ F S+  V TA++  Y K NSL DA + F  +P  +V + N+++ G V++
Sbjct: 270 RQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRA 329

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   +A+ LF  + RS I  D  S +   +AC +      G  +H   +K   +  + + 
Sbjct: 330 GLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVN 389

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE---LAFGFLHRLP-N 198
           N ++D+YGKC ++ +A  +F  M  KD +SWN++IAA  +NG+ +   L F  + R    
Sbjct: 390 NAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMK 449

Query: 199 PDTISYNEVINGIAQF-----------------------------------GDIEDAIMI 223
           PD  +Y  V+   A                                     G I++A  +
Sbjct: 450 PDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKL 509

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +      SWN+IL+G+       EA   F EM    +  D +TF+T+L   A L+ +
Sbjct: 510 HDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATI 569

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH  +IKQ +     ++S L+DMY+KCG +  +  +F  + +++ V+WNAMI GY
Sbjct: 570 ELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGY 629

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A +G   + + +FE+++   ++ P+  TF+ VL ACSH  + FD    YF  MT  Y ++
Sbjct: 630 ALHGLGVEALRMFERMQK-ENVVPNHATFVAVLRACSHVGL-FDDGCRYFHLMTTHYKLE 687

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           P +EH   M+ ++G+      A + I  + F +  V+W+ LLS      D+++A ++A+ 
Sbjct: 688 PQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASN 747

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           V+ L+ D   VY++L N+Y   G W   S  R  +++  L+KE GCSWIEV++
Sbjct: 748 VLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQS 800



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 199/425 (46%), Gaps = 50/425 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      LL++ S L   +   Q+H   +K+G   +V   +AL+  Y K  SL DA   
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 206

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+ + VSW + I+G VQ+ +Y + L LF+E++R  +     S+ SA  +C  +  L
Sbjct: 207 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 266

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED----------------------- 157
             G  +H+  +K       V+   ++D+Y K  S+ D                       
Sbjct: 267 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 326

Query: 158 --------AIGVFGEMIDK----DIISWNSVIAASARNGN---------LELAFGFLHRL 196
                   A+G+F  MI      D++S + V +A A             L +  GF    
Sbjct: 327 VRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGF---- 382

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
            + D    N V++   +   + +A +I   M   +S SWN+I+          + +  F 
Sbjct: 383 -DVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFN 441

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           EM    +  D++T+ ++L   A L +L +G+++H  VIK GL +   VAS ++DMY KCG
Sbjct: 442 EMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCG 501

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            ++ A  +   +  + +V+WNA+++G++ N +  +  + F ++  +  L+PD  TF  VL
Sbjct: 502 IIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDM-GLKPDHFTFATVL 560

Query: 377 AACSH 381
             C++
Sbjct: 561 DTCAN 565



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 205/445 (46%), Gaps = 55/445 (12%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           Y     ++ A  +F  +P P VVSWN+L+SGY Q G ++++++LFVE+ R  +  D  +F
Sbjct: 93  YSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTF 152

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
              L +C  L  L LG+ +H+  VK  LE  V   + L+DMYGKC S++DA+  F  M +
Sbjct: 153 AVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPE 212

Query: 168 KDIISWNSVIAASARNGN----LEL----------------AFGF--------------- 192
           ++ +SW + IA   +N      LEL                A  F               
Sbjct: 213 RNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQL 272

Query: 193 -LHRLPNP---DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV 248
             H + N    D +    +++  A+   + DA      +P+    + N+++ G V     
Sbjct: 273 HAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLG 332

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
            EA+ LF  M    +  D  + S + S  A       G  +H   IK G D  I V +A+
Sbjct: 333 IEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAV 392

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           LD+Y KC  +  A  +F+ + +K+ V+WNA+I    +NG     I  F ++     ++PD
Sbjct: 393 LDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRF-GMKPD 451

Query: 369 SVTFLNVLAACS------HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422
             T+ +VL AC+      +  +  DKV +    +  D  +  TV      + +  + G +
Sbjct: 452 DFTYGSVLKACAALRSLEYGLMVHDKVIK--SGLGSDAFVASTV------VDMYCKCGII 503

Query: 423 WRAQRMIRELGFGSYGVVWRALLSA 447
             AQ++   +G G   V W A+LS 
Sbjct: 504 DEAQKLHDRIG-GQQVVSWNAILSG 527



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 93/165 (56%)

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           +P  DT+S+N ++   +  GDI  A+ +   MP P+  SWN++++GY  R    E++ LF
Sbjct: 78  MPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLF 137

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
            EM  + V  D  TF+ +L   + L  L+ G+ +H+  +K GL+  +   SAL+DMY KC
Sbjct: 138 VEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKC 197

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
             ++ A   F  +  +N V+W A I G  +N    + +ELF +++
Sbjct: 198 RSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQ 242



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 150/319 (47%), Gaps = 29/319 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +L+A + L    Y   +H  ++KSG  S+ FV++ ++  Y K   + +A K+
Sbjct: 450 PDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKL 509

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
              I    VVSWN+++SG+  + +  +A   F E+    +  D ++F + L  C  L ++
Sbjct: 510 HDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATI 569

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IH +I+K  +     I++ L+DMY KCG + D++ VF ++  +D +SWN++I   
Sbjct: 570 ELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGY 629

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
           A +G    A     R+      P+  ++  V+   +  G  +D       M +     P 
Sbjct: 630 ALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQ 689

Query: 232 SSSWNSILTGYVNRNRVP-EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
              + + +   + R++ P EA+     M  +                    A+ W  L+ 
Sbjct: 690 LEHF-ACMVDILGRSKGPQEAVKFINSMPFQ------------------ADAVIWKTLLS 730

Query: 291 SCVIKQGLDASIVVASALL 309
            C I+Q ++ + + AS +L
Sbjct: 731 ICKIRQDVEIAELAASNVL 749



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 7/112 (6%)

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           ++  G   +  V++ LL MY++C     A  +F ++ R++ V+WN M+T Y+  GD++  
Sbjct: 43  MVVSGFVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTA 102

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           + LF+ +       PD V++ N L +       F +  + F  M +  G+ P
Sbjct: 103 VALFDGMP-----DPDVVSW-NALVSGYCQRGMFQESVDLFVEMAR-RGVSP 147


>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Glycine max]
          Length = 518

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 162/507 (31%), Positives = 275/507 (54%), Gaps = 25/507 (4%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKI-----------NSLAD----AHKMFVEIPQP 67
           +Q+H  ++ +G  SNV       GF RK+           N+ +     A +MF +IPQP
Sbjct: 18  KQIHALMIVNGLTSNV-------GFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQP 70

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
               WN+ I G  QS     A+ L+ ++++  +  D ++F   L AC +L  +  G A+H
Sbjct: 71  DTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVH 130

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
            ++++      VV+ N L+  + KCG ++ A  +F +    D+++W+++IA  A+ G+L 
Sbjct: 131 GRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAGYAQRGDLS 190

Query: 188 LAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
           +A      +P  D +S+N +I    + G++E A  +    P  +  SWN+++ GYV RN 
Sbjct: 191 VARKLFDEMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNL 250

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA-SIVVAS 306
             EAL LF EM       DE T  ++LS  A L  L  G  +H+ +I+      S ++ +
Sbjct: 251 NREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLGN 310

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
           AL+DMY+KCG +  A  +F  +  K++V+WN++I+G A +G   + + LF ++K  + + 
Sbjct: 311 ALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTK-VC 369

Query: 367 PDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426
           PD VTF+ VLAACSH     D+ + YF  M   Y I+PT+ HC  ++ ++G+ G +  A 
Sbjct: 370 PDEVTFVGVLAACSHAG-NVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAF 428

Query: 427 RMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486
             I  +      +VWR+LL A     D+++A+ +  +++++ GD    YV+L N+Y S G
Sbjct: 429 NFIASMKIEPNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGDQSGDYVLLSNVYASQG 488

Query: 487 NWDVASVMRNFMRERGLRKEAGCSWIE 513
            WD A  +R  M + G+ K  G S++E
Sbjct: 489 EWDGAENVRKLMDDNGVTKNRGSSFVE 515



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 168/426 (39%), Gaps = 82/426 (19%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    +L+A + L W      +H  +L+ GF SNV V   L+ F+ K   L  A  +
Sbjct: 105 PDNFTFPFVLKACTKLFWVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDI 164

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +  +  VV+W++LI+GY Q G    A  LF E+ +                       
Sbjct: 165 FDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMPK----------------------- 201

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
                           R +V  N +I +Y K G +E A  +F E   KDI+SWN++I   
Sbjct: 202 ----------------RDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGY 245

Query: 181 A-RNGN---LELAFGFLHRLPNPDTISYNEVINGIAQFGDIE------------------ 218
             RN N   LEL          PD ++   +++  A  GD+E                  
Sbjct: 246 VLRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLS 305

Query: 219 ------------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                              A+ +   +   +  SWNS+++G        E+L LF EM+ 
Sbjct: 306 TLLGNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKM 365

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWG-MLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
             V  DE TF  +L+  +    +  G    H    K  ++ +I     ++DM  + G ++
Sbjct: 366 TKVCPDEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLK 425

Query: 320 IADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR-DLQPDSVTFLNVLA 377
            A +   S+    N + W +++     +GD+       EQL  +R D   D V   NV A
Sbjct: 426 EAFNFIASMKIEPNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGDQSGDYVLLSNVYA 485

Query: 378 ACSHTD 383
           +    D
Sbjct: 486 SQGEWD 491


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 169/551 (30%), Positives = 283/551 (51%), Gaps = 41/551 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +++ L  +L+A   LG     + +H Y +K GF S++FVS + +  Y K   L  A   F
Sbjct: 145 SDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAF 204

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            +I    +V+WN++I+GY Q+    +A+ LF ++E      +  +F   L A   +    
Sbjct: 205 DQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSA 264

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           +G   H+K++K      V +A  L+DMY K   +ED    FGEM  ++++S+N++I   +
Sbjct: 265 VGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYS 324

Query: 182 RNGNLELAFGFLHRLPN----PDTISY--------------------------------- 204
             G  E A     +L +    PD+ ++                                 
Sbjct: 325 LMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVS 384

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N ++N  ++ G  + A+    S+  PNS  W  I++G+       +AL  F +M+   
Sbjct: 385 VGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFI 444

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
              DE++ S+++  ++  +A+  G  +H+ V+K GLD +I V SA++DMYSKCG VE A 
Sbjct: 445 DKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQ 504

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F  +  KN+V+WN+MITGYA+NG   + + LF+++ T   + P +VTF+ +L ACSH 
Sbjct: 505 KVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEM-TSSGILPTAVTFVGILFACSHA 563

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  ++   ++  M  +YGI P++EHC  M+ L+G+ G +  A+  +    F     +W 
Sbjct: 564 GL-VEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSKEPGIWG 622

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
           +LLSA G   + DV   +A   + LE      Y  L N+Y S   W   S +R+ M++ G
Sbjct: 623 SLLSACGVHKNSDVGSRAAQHCLFLEPHYSSSYTALSNIYASKELWSEVSRIRDLMKDMG 682

Query: 503 LRKEAGCSWIE 513
           + KE GCSWIE
Sbjct: 683 VEKEPGCSWIE 693



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 205/423 (48%), Gaps = 44/423 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN       + A +     +    LHC ILK GF + +FVS+ L+  Y K + + +A  +
Sbjct: 39  PNAITYSATISACAQSTRPSLATSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFL 98

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL----ERSEIYADAYSFTSALAACGQ 116
           F ++P+   VSWNS+I+GY Q G   +A  LF  +    E  ++    ++  + L ACG 
Sbjct: 99  FDDMPERDDVSWNSMIAGYSQRGLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGG 158

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           LG  ++G  +H   VK   +  + ++   + MY KCG ++ A   F ++ +KDI++WN++
Sbjct: 159 LGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTM 218

Query: 177 IAASARNGNLELAFGFLHRL------PNP------------------------------- 199
           I   A+N   E A    +++      PN                                
Sbjct: 219 ITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGC 278

Query: 200 --DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
             D      +++  ++F DIED       M   N  S+N+++TGY    +  EAL ++ +
Sbjct: 279 SMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQ 338

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           +QS+ +  D +TF  + S  +  S +  G  +H   +K GLD+ + V +++++ YSKCG 
Sbjct: 339 LQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGF 398

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
            + A   F S+ R N V W  +I+G+A+NG+  K +  F +++   D + D  +  +V+ 
Sbjct: 399 TDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFID-KTDEFSSSSVIK 457

Query: 378 ACS 380
           A S
Sbjct: 458 AVS 460



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 173/358 (48%), Gaps = 44/358 (12%)

Query: 66  QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA 125
           + +VV W S I+   + G   +AL+ F+++ R+ I  +A ++++ ++AC Q     L  +
Sbjct: 3   ETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATS 62

Query: 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN 185
           +H  I+K      + +++ LI MY K   +++A  +F +M ++D +SWNS+IA  ++ G 
Sbjct: 63  LHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGL 122

Query: 186 LELAFGFLHRLPN-------------------------------------------PDTI 202
            E A G    + N                                            D  
Sbjct: 123 NEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLF 182

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                +    + G ++ A +    + + +  +WN+++TGY       EA+ LF +M+ + 
Sbjct: 183 VSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEG 242

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
              ++ TF  +L     +S    G   H+ V+K G    + VA+AL+DMYSK   +E  +
Sbjct: 243 FKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVE 302

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             F  + ++NLV++NA+ITGY+  G   + + ++ QL++   ++PDS TF+ + ++CS
Sbjct: 303 RAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQS-EGMEPDSFTFVGLFSSCS 359



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 181/392 (46%), Gaps = 43/392 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+     +L+AS+ +      +  H  +LK G   +VFV+TAL+  Y K   + D  + 
Sbjct: 245 PNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERA 304

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+ + ++VS+N+LI+GY   GKY +AL ++ +L+   +  D+++F    ++C    ++
Sbjct: 305 FGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTV 364

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H   VK+ L+  V + N +++ Y KCG  + A+  F  +   + + W  +I+  
Sbjct: 365 AEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGF 424

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQF---------------------- 214
           A+NG  E A     ++       D  S + VI  ++ +                      
Sbjct: 425 AQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTI 484

Query: 215 -------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                        G +EDA  + S MP  N  SWNS++TGY       EAL LF EM S 
Sbjct: 485 YVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTSS 544

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEI 320
            +     TF  +L   +    +  G   ++ ++   G+  S+   + ++D+  + G +E 
Sbjct: 545 GILPTAVTFVGILFACSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEE 604

Query: 321 ADS-MFRSLCRKNLVTWNAMIT--GYARNGDL 349
           A++ +  S   K    W ++++  G  +N D+
Sbjct: 605 AEAFLLSSSFSKEPGIWGSLLSACGVHKNSDV 636



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 121/257 (47%), Gaps = 44/257 (17%)

Query: 165 MIDKDIISWNSVIAASARNGNLELAFG-FLHRLP---NPDTISYNEVINGIAQ------- 213
           M++ +++ W S I  +AR G ++ A   FL  L     P+ I+Y+  I+  AQ       
Sbjct: 1   MLETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLA 60

Query: 214 -----------FGD-----------------IEDAIMILSSMPSPNSSSWNSILTGYVNR 245
                      F +                 I++A  +   MP  +  SWNS++ GY  R
Sbjct: 61  TSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQR 120

Query: 246 NRVPEALHLFGEM----QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
               EA  LF  M    ++  + + ++T +T+L    GL     G  +H   +K G D+ 
Sbjct: 121 GLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSD 180

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
           + V+ + + MY KCG +++A   F  +  K++V WN MITGYA+N    + IELF Q++ 
Sbjct: 181 LFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQME- 239

Query: 362 VRDLQPDSVTFLNVLAA 378
           +   +P+  TF  VL A
Sbjct: 240 LEGFKPNDTTFCCVLKA 256



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 129/317 (40%), Gaps = 44/317 (13%)

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           M   N   W S +T    R  V +AL  F +M    +  +  T+S  +S  A  +  +  
Sbjct: 1   MLETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLA 60

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
             +H  ++K+G    + V+S L+ MYSK  +++ A  +F  +  ++ V+WN+MI GY++ 
Sbjct: 61  TSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQR 120

Query: 347 GDLTKVIELFEQLKTVRD---LQPDSVTFLNVLAACS--------------HTDIPFDKV 389
           G   +   LF  +    +   L     T   VL AC                  I FD  
Sbjct: 121 GLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFD-- 178

Query: 390 SEYFESMTKDY-----GI------------KPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
           S+ F S +  Y     GI               +    +MI    Q      A  +  ++
Sbjct: 179 SDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQM 238

Query: 433 ---GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD-YVYVMLCNLYTSHGNW 488
              GF      +  +L AS A SD  V R   A+V+KL    D +V   L ++Y+    +
Sbjct: 239 ELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKF--Y 296

Query: 489 DVASVMRNF--MRERGL 503
           D+  V R F  M +R L
Sbjct: 297 DIEDVERAFGEMSKRNL 313


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 177/546 (32%), Positives = 278/546 (50%), Gaps = 47/546 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH +ILKSGF     V  +L+ FY K   +  A K+F E+ +  V+SWNS+I+GYV +
Sbjct: 64  EQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSN 123

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   K L++FV++  S I  D  +  S  A C     + LG A+HS  VK    R     
Sbjct: 124 GLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFC 183

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
           N L+DMY KCG ++ A  VF EM D+ ++S+ S+IA  AR G    A      +     +
Sbjct: 184 NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 243

Query: 199 PDTISYNEVINGIAQF-----------------------------------GDIEDAIMI 223
           PD  +   V+N  A++                                   G +++A ++
Sbjct: 244 PDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELV 303

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLSA 282
            S M   +  SWN+I+ GY       EAL LF  + + K    DE T + +L   A LSA
Sbjct: 304 FSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSA 363

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
              G  IH  +++ G  +   VA++L+DMY+KCG + +A  +F  +  K+LV+W  MI G
Sbjct: 364 FDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAG 423

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           Y  +G   + I LF Q++    ++ D ++F+++L ACSH+ +  D+   +F  M  +  I
Sbjct: 424 YGMHGFGKEAIALFNQMRQA-GIEADEISFVSLLYACSHSGL-VDEGWRFFNIMRHECKI 481

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
           +PTVEH   ++ ++ + G++ +A R I  +       +W ALL       D+ +A   A 
Sbjct: 482 EPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAE 541

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN-----V 517
           +V +LE ++   YV++ N+Y     W+    +R  + +RGLRK  GCSWIE++      V
Sbjct: 542 KVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFV 601

Query: 518 AAHSSN 523
           A  SSN
Sbjct: 602 AGDSSN 607



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 167/370 (45%), Gaps = 40/370 (10%)

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+     + WN L++   +SG +  ++ LF ++  S +  D+Y+F+    +   L S+
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H  I+K        + N L+  Y K   V+ A  VF EM ++D+ISWNS+I   
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 181 ARNGNLELAFGFLHRL-------------------PNPDTISYNEVINGI---------- 211
             NG  E       ++                    +   IS    ++ I          
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     ++ GD++ A  +   M   +  S+ S++ GY       EA+ LF EM+ +
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D YT + +L+  A    L  G  +H  + +  L   I V++AL+DMY+KCG ++ A
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 300

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           + +F  +  K++++WN +I GY++N    + + LF  L   +   PD  T   VL AC+ 
Sbjct: 301 ELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACAS 360

Query: 382 TDIPFDKVSE 391
               FDK  E
Sbjct: 361 LS-AFDKGRE 369



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 4/192 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +  +L A + L      +++H YI+++G+ S+  V+ +L+  Y K  +L  AH +
Sbjct: 346 PDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHML 405

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +I    +VSW  +I+GY   G  ++A+ LF ++ ++ I AD  SF S L AC   G +
Sbjct: 406 FDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLV 465

Query: 121 QLGMAIHSKIVKY--SLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
             G    + I+++   +E  V    C++DM  + G +  A      M I  D   W +++
Sbjct: 466 DEGWRFFN-IMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALL 524

Query: 178 AASARNGNLELA 189
                + +++LA
Sbjct: 525 CGCRIHHDVKLA 536


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 177/546 (32%), Positives = 278/546 (50%), Gaps = 47/546 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH +ILKSGF     V  +L+ FY K   +  A K+F E+ +  V+SWNS+I+GYV +
Sbjct: 215 EQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSN 274

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   K L++FV++  S I  D  +  S  A C     + LG A+HS  VK    R     
Sbjct: 275 GLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFC 334

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
           N L+DMY KCG ++ A  VF EM D+ ++S+ S+IA  AR G    A      +     +
Sbjct: 335 NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394

Query: 199 PDTISYNEVINGIAQF-----------------------------------GDIEDAIMI 223
           PD  +   V+N  A++                                   G +++A ++
Sbjct: 395 PDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELV 454

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLSA 282
            S M   +  SWN+I+ GY       EAL LF  + + K    DE T + +L   A LSA
Sbjct: 455 FSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSA 514

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
              G  IH  +++ G  +   VA++L+DMY+KCG + +A  +F  +  K+LV+W  MI G
Sbjct: 515 FDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAG 574

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           Y  +G   + I LF Q++    ++ D ++F+++L ACSH+ +  D+   +F  M  +  I
Sbjct: 575 YGMHGFGKEAIALFNQMRQA-GIEADEISFVSLLYACSHSGL-VDEGWRFFNIMRHECKI 632

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
           +PTVEH   ++ ++ + G++ +A R I  +       +W ALL       D+ +A   A 
Sbjct: 633 EPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAE 692

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN-----V 517
           +V +LE ++   YV++ N+Y     W+    +R  + +RGLRK  GCSWIE++      V
Sbjct: 693 KVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFV 752

Query: 518 AAHSSN 523
           A  SSN
Sbjct: 753 AGDSSN 758



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 187/408 (45%), Gaps = 40/408 (9%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++  +I  +GF+ +  + + L   Y     L +A ++F E+     + WN L++   +S
Sbjct: 114 KEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKS 173

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G +  ++ LF ++  S +  D+Y+F+    +   L S+  G  +H  I+K        + 
Sbjct: 174 GDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG 233

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG-FLHRL----- 196
           N L+  Y K   V+ A  VF EM ++D+ISWNS+I     NG  E     F+  L     
Sbjct: 234 NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE 293

Query: 197 -------------PNPDTISYNEVINGI--------------------AQFGDIEDAIMI 223
                         +   IS    ++ I                    ++ GD++ A  +
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAV 353

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              M   +  S+ S++ GY       EA+ LF EM+ + +  D YT + +L+  A    L
Sbjct: 354 FREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLL 413

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H  + +  L   I V++AL+DMY+KCG ++ A+ +F  +  K++++WN +I GY
Sbjct: 414 DEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGY 473

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE 391
           ++N    + + LF  L   +   PD  T   VL AC+     FDK  E
Sbjct: 474 SKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLS-AFDKGRE 520



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 155/353 (43%), Gaps = 42/353 (11%)

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
           SV   N+ +  + +SG    A+ L     + +I  D  +  S L  C    SL+ G  + 
Sbjct: 60  SVTDANTQLRRFCESGNLENAVKLLCVSGKWDI--DPRTLCSVLQLCADSKSLKDGKEVD 117

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
           + I          + + L  MY  CG +++A  VF E+  +  + WN ++   A++G+  
Sbjct: 118 NFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFS 177

Query: 188 LAFGFLHRLPNP----DTISY-------------------------------NEVINGIA 212
            + G   ++ +     D+ ++                               N V N + 
Sbjct: 178 GSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLV 237

Query: 213 QF----GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268
            F      ++ A  +   M   +  SWNSI+ GYV+     + L +F +M    + +D  
Sbjct: 238 AFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLA 297

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           T  ++ +G A    ++ G  +HS  +K          + LLDMYSKCG ++ A ++FR +
Sbjct: 298 TIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREM 357

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +++V++ +MI GYAR G   + ++LFE+++    + PD  T   VL  C+ 
Sbjct: 358 SDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE-EGISPDVYTVTAVLNCCAR 409



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 4/192 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +  +L A + L      +++H YI+++G+ S+  V+ +L+  Y K  +L  AH +
Sbjct: 497 PDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHML 556

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +I    +VSW  +I+GY   G  ++A+ LF ++ ++ I AD  SF S L AC   G +
Sbjct: 557 FDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLV 616

Query: 121 QLGMAIHSKIVKY--SLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
             G    + I+++   +E  V    C++DM  + G +  A      M I  D   W +++
Sbjct: 617 DEGWRFFN-IMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALL 675

Query: 178 AASARNGNLELA 189
                + +++LA
Sbjct: 676 CGCRIHHDVKLA 687


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 165/533 (30%), Positives = 276/533 (51%), Gaps = 41/533 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH + +K+ F S+  V TA++  Y K NSL DA + F  +P  +V + N+++ G V++
Sbjct: 312 RQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRA 371

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   +A+ LF  + RS I  D  S +   +AC +      G  +H   +K   +  + + 
Sbjct: 372 GLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVN 431

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE---LAFGFLHRLP-N 198
           N ++D+YGKC ++ +A  +F  M  KD +SWN++IAA  +NG+ +   L F  + R    
Sbjct: 432 NAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMK 491

Query: 199 PDTISYNEVINGIAQF-----------------------------------GDIEDAIMI 223
           PD  +Y  V+   A                                     G I++A  +
Sbjct: 492 PDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKL 551

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +      SWN+IL+G+       EA   F EM    +  D +TF+T+L   A L+ +
Sbjct: 552 HDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATI 611

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH  +IKQ +     ++S L+DMY+KCG +  +  +F  + +++ V+WNAMI GY
Sbjct: 612 ELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGY 671

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A +G   + + +FE+++   ++ P+  TF+ VL ACSH  + FD    YF  MT  Y ++
Sbjct: 672 ALHGLGVEALRMFERMQK-ENVVPNHATFVAVLRACSHVGL-FDDGCRYFHLMTTHYKLE 729

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           P +EH   M+ ++G+      A + I  + F +  V+W+ LLS      D+++A ++A+ 
Sbjct: 730 PQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASN 789

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           V+ L+ D   VY++L N+Y   G W   S  R  +++  L+KE GCSWIEV++
Sbjct: 790 VLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQS 842



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 199/425 (46%), Gaps = 50/425 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      LL++ S L   +   Q+H   +K+G   +V   +AL+  Y K  SL DA   
Sbjct: 189 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 248

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+ + VSW + I+G VQ+ +Y + L LF+E++R  +     S+ SA  +C  +  L
Sbjct: 249 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 308

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED----------------------- 157
             G  +H+  +K       V+   ++D+Y K  S+ D                       
Sbjct: 309 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 368

Query: 158 --------AIGVFGEMIDK----DIISWNSVIAASARNGN---------LELAFGFLHRL 196
                   A+G+F  MI      D++S + V +A A             L +  GF    
Sbjct: 369 VRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGF---- 424

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
            + D    N V++   +   + +A +I   M   +S SWN+I+          + +  F 
Sbjct: 425 -DVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFN 483

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           EM    +  D++T+ ++L   A L +L +G+++H  VIK GL +   VAS ++DMY KCG
Sbjct: 484 EMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCG 543

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            ++ A  +   +  + +V+WNA+++G++ N +  +  + F ++  +  L+PD  TF  VL
Sbjct: 544 IIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDM-GLKPDHFTFATVL 602

Query: 377 AACSH 381
             C++
Sbjct: 603 DTCAN 607



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 205/445 (46%), Gaps = 55/445 (12%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           Y     ++ A  +F  +P P VVSWN+L+SGY Q G ++++++LFVE+ R  +  D  +F
Sbjct: 135 YSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTF 194

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
              L +C  L  L LG+ +H+  VK  LE  V   + L+DMYGKC S++DA+  F  M +
Sbjct: 195 AVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPE 254

Query: 168 KDIISWNSVIAASARNGN----LEL----------------AFGF--------------- 192
           ++ +SW + IA   +N      LEL                A  F               
Sbjct: 255 RNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQL 314

Query: 193 -LHRLPNP---DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV 248
             H + N    D +    +++  A+   + DA      +P+    + N+++ G V     
Sbjct: 315 HAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLG 374

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
            EA+ LF  M    +  D  + S + S  A       G  +H   IK G D  I V +A+
Sbjct: 375 IEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAV 434

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           LD+Y KC  +  A  +F+ + +K+ V+WNA+I    +NG     I  F ++     ++PD
Sbjct: 435 LDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRF-GMKPD 493

Query: 369 SVTFLNVLAACS------HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422
             T+ +VL AC+      +  +  DKV +    +  D  +  TV      + +  + G +
Sbjct: 494 DFTYGSVLKACAALRSLEYGLMVHDKVIK--SGLGSDAFVASTV------VDMYCKCGII 545

Query: 423 WRAQRMIRELGFGSYGVVWRALLSA 447
             AQ++   +G G   V W A+LS 
Sbjct: 546 DEAQKLHDRIG-GQQVVSWNAILSG 569



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 94/167 (56%)

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           +P  DT+S+N ++   +  GDI  A+ +   MP P+  SWN++++GY  R    E++ LF
Sbjct: 120 MPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLF 179

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
            EM  + V  D  TF+ +L   + L  L+ G+ +H+  +K GL+  +   SAL+DMY KC
Sbjct: 180 VEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKC 239

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
             ++ A   F  +  +N V+W A I G  +N    + +ELF +++ +
Sbjct: 240 RSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRL 286



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 150/319 (47%), Gaps = 29/319 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +L+A + L    Y   +H  ++KSG  S+ FV++ ++  Y K   + +A K+
Sbjct: 492 PDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKL 551

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
              I    VVSWN+++SG+  + +  +A   F E+    +  D ++F + L  C  L ++
Sbjct: 552 HDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATI 611

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IH +I+K  +     I++ L+DMY KCG + D++ VF ++  +D +SWN++I   
Sbjct: 612 ELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGY 671

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
           A +G    A     R+      P+  ++  V+   +  G  +D       M +     P 
Sbjct: 672 ALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQ 731

Query: 232 SSSWNSILTGYVNRNRVP-EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
              + + +   + R++ P EA+     M  +                    A+ W  L+ 
Sbjct: 732 LEHF-ACMVDILGRSKGPQEAVKFINSMPFQ------------------ADAVIWKTLLS 772

Query: 291 SCVIKQGLDASIVVASALL 309
            C I+Q ++ + + AS +L
Sbjct: 773 ICKIRQDVEIAELAASNVL 791



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 7/112 (6%)

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           ++  G   +  V++ LL MY++C     A  +F ++ R++ V+WN M+T Y+  GD++  
Sbjct: 85  MVVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTA 144

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           + LF+ +       PD V++ N L +       F +  + F  M +  G+ P
Sbjct: 145 VALFDGMP-----DPDVVSW-NALVSGYCQRGMFQESVDLFVEMAR-RGVSP 189


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 166/518 (32%), Positives = 275/518 (53%), Gaps = 37/518 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+ L  LL+A + +    +    H  ++K GF+  VFV  AL+  Y    SL D+ + 
Sbjct: 108 PNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRF 167

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+   +VVSWNS+I+GY Q+G  R+A +LF  + R  + AD ++  S L AC   G+L
Sbjct: 168 FDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNL 227

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +HS ++       +++AN L+DMYGKCG +  A   F  M  K+ +SW S++ A 
Sbjct: 228 EFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCAL 287

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           A+  +++ A  +  ++P    IS                               WN++++
Sbjct: 288 AKRASIDAARDWFEQIPEKSIIS-------------------------------WNAMIS 316

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
            YV   R  EAL L+  M+   +  DE+T + +LS    L  L  G +IH C+     + 
Sbjct: 317 CYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNP 376

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
            + + ++LLDMY++CGQV+ A S+F  +  KN+++WNA+I   A +G     +  F  + 
Sbjct: 377 GVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSM- 435

Query: 361 TVRD-LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
            V D   PD +TF+ +L+AC+H  +  +    YF++M   Y +KP VEH   M+ L+G+ 
Sbjct: 436 -VSDAFPPDEITFVALLSACNHGGL-LEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRG 493

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G++ +A  +I+++      VVW ALL A      + + +    ++++LEG S  ++V++ 
Sbjct: 494 GQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLIS 553

Query: 480 N-LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           N LY +H  W+    +R  MRE G++K  G S IE  +
Sbjct: 554 NMLYETH-QWEDMKRLRKLMREWGMKKNMGVSSIETNS 590



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 118/245 (48%), Gaps = 6/245 (2%)

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G +  A  +   +P P+   +NS++  Y N +   EAL L   M  + +  +E+T   +L
Sbjct: 58  GGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLL 117

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
              A + A    M+ H  V+K G    + V +ALL  Y+  G +  +   F  +  +N+V
Sbjct: 118 KACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVV 177

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS-HTDIPFDKVSEYF 393
           +WN+MI GYA+ G+  +   LFE ++  + L  D  T +++L ACS   ++ F K+    
Sbjct: 178 SWNSMINGYAQAGNTREACSLFEGMRR-QGLLADEFTLVSLLFACSAEGNLEFGKL---V 233

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD 453
            S     G +  +    +++ + G+ G++  A      + F +  V W ++L A    + 
Sbjct: 234 HSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKN-AVSWTSMLCALAKRAS 292

Query: 454 LDVAR 458
           +D AR
Sbjct: 293 IDAAR 297


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 164/517 (31%), Positives = 273/517 (52%), Gaps = 35/517 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+ L  LL+A + +    +    H  ++K GF+  VFV  AL+  Y    SL D+ + 
Sbjct: 108 PNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRF 167

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+   +VVSWNS+I+GY Q+G  R+A +LF  + R  + AD ++  S L AC   G+L
Sbjct: 168 FDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNL 227

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +HS ++       +++AN L+DMYGKCG +  A   F  M  K+ +SW S++ A 
Sbjct: 228 EFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCAL 287

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           A+  +++ A  +  ++P    IS                               WN++++
Sbjct: 288 AKRASIDAARDWFEQIPEKSIIS-------------------------------WNAMIS 316

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
            YV   R  EAL L+  M+   +  DE+T + +LS    L  L  G +IH C+     + 
Sbjct: 317 CYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNP 376

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
            + + ++LLDMY++CGQV+ A S+F  +  KN+++WNA+I   A +G     +  F  + 
Sbjct: 377 GVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSM- 435

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
                 PD +TF+ +L+AC+H  +  +    YF++M   Y +KP VEH   M+ L+G+ G
Sbjct: 436 VFDAFPPDEITFVALLSACNHGGL-LEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGG 494

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
           ++ +A  +I+++      VVW ALL A      + + +    ++++LEG S  ++V++ N
Sbjct: 495 QLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISN 554

Query: 481 -LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            LY +H  W+    +R  MRE G++K  G S IE  +
Sbjct: 555 MLYETH-QWEDMKRLRKLMREWGMKKNMGVSSIETNS 590



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 118/245 (48%), Gaps = 6/245 (2%)

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G +  A  +   +P P+   +NS++  Y N +   EAL L   M  + +  +E+T   +L
Sbjct: 58  GGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLL 117

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
              A + A    M+ H  V+K G    + V +ALL  Y+  G +  +   F  +  +N+V
Sbjct: 118 KACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVV 177

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS-HTDIPFDKVSEYF 393
           +WN+MI GYA+ G+  +   LFE ++  + L  D  T +++L ACS   ++ F K+    
Sbjct: 178 SWNSMINGYAQAGNTREACSLFEGMRR-QGLLADEFTLVSLLFACSAEGNLEFGKL---V 233

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD 453
            S     G +  +    +++ + G+ G++  A      + F +  V W ++L A    + 
Sbjct: 234 HSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKN-AVSWTSMLCALAKRAS 292

Query: 454 LDVAR 458
           +D AR
Sbjct: 293 IDAAR 297


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 171/534 (32%), Positives = 282/534 (52%), Gaps = 44/534 (8%)

Query: 22  CQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           C+++H Y+LK GF S   V  +L+  Y K   +  A  +F E+    VVSWNS+ISG   
Sbjct: 177 CKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTM 236

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           +G  R  L  F+++    +  D+ +  + L AC  +G+L LG A+H+  VK     GV+ 
Sbjct: 237 NGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMF 296

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN--- 198
            N L+DMY KCG++  A  VF +M +  I+SW S+IAA  R G    A G    + +   
Sbjct: 297 NNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGL 356

Query: 199 -PDTISY-----------------------------------NEVINGIAQFGDIEDAIM 222
            PD  +                                    N ++N  A+ G +E+A +
Sbjct: 357 RPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANL 416

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVP-EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           I S +P  N  SWN+++ GY ++N +P EAL LF +MQ +  P D+ T + +L   AGL+
Sbjct: 417 IFSQLPVKNIVSWNTMIGGY-SQNSLPNEALQLFLDMQKQLKP-DDVTMACVLPACAGLA 474

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL  G  IH  ++++G  + + VA AL+DMY KCG + +A  +F  + +K+++ W  MI 
Sbjct: 475 ALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIA 534

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GY  +G   + I  FE+++ V  ++P+  +F ++L AC+H+ +   +  + F+SM  +  
Sbjct: 535 GYGMHGFGKEAISTFEKMR-VAGIEPEESSFTSILYACTHSGL-LKEGWKLFDSMKSECN 592

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I+P +EH   M+ L+ + G + RA + I  +       +W ALLS      D+++A   A
Sbjct: 593 IEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVA 652

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
             + +LE ++   YV+L N+Y     W+    ++  + + GL+ + GCSWIEV+
Sbjct: 653 EHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQ 706



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 197/421 (46%), Gaps = 56/421 (13%)

Query: 14  SDLGWDTYC---------------QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           S+L  +TYC               +++H  I  +G   +  +   L+  Y     L    
Sbjct: 53  SELELNTYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGR 112

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           ++F  I    +  WN L+S Y + G YR+++ LF +++   I  D+Y+FT  L       
Sbjct: 113 RIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASA 172

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            ++    +H  ++K        + N LI  Y KCG VE A  +F E+ D+D++SWNS+I+
Sbjct: 173 KVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMIS 232

Query: 179 ASARNG----NLELAFGFLHRLPNPDTISY------------------------------ 204
               NG     LE     L+   + D+ +                               
Sbjct: 233 GCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSG 292

Query: 205 -----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                N +++  ++ G++  A  +   M      SW SI+  +V      EA+ LF EMQ
Sbjct: 293 GVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQ 352

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           SK +  D Y  ++++   A  ++L  G  +H+ + K  + +++ V++AL++MY+KCG +E
Sbjct: 353 SKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSME 412

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A+ +F  L  KN+V+WN MI GY++N    + ++LF  L   + L+PD VT   VL AC
Sbjct: 413 EANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLF--LDMQKQLKPDDVTMACVLPAC 470

Query: 380 S 380
           +
Sbjct: 471 A 471



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 6/194 (3%)

Query: 193 LHRLPNPDTISYNEVINGIAQF-----GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
           +H + + + ++ +EV+     F     GD+     I   + +     WN +++ Y     
Sbjct: 79  VHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGN 138

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307
             E++ LF +MQ   +  D YTF+ +L G A  + +     +H  V+K G  +   V ++
Sbjct: 139 YRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNS 198

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           L+  Y KCG+VE A  +F  L  +++V+WN+MI+G   NG     +E F Q+  +  +  
Sbjct: 199 LIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNL-GVDV 257

Query: 368 DSVTFLNVLAACSH 381
           DS T +NVL AC++
Sbjct: 258 DSATLVNVLVACAN 271



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 103/221 (46%), Gaps = 31/221 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  +  +L A + L      +++H +IL+ G+ S++ V+ AL+  Y K   L  A ++
Sbjct: 458 PDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQL 517

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP+  ++ W  +I+GY   G  ++A++ F ++  + I  +  SFTS L AC   G L
Sbjct: 518 FDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLL 577

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +                     M  +C ++E  +  +  M+D  I          
Sbjct: 578 KEGWKLFD------------------SMKSEC-NIEPKLEHYACMVDLLI---------- 608

Query: 181 ARNGNLELAFGFLHRLP-NPDTISYNEVINGIAQFGDIEDA 220
            R+GNL  A+ F+  +P  PD   +  +++G     D+E A
Sbjct: 609 -RSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELA 648



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 37/224 (16%)

Query: 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
           N+ +  +     +  A+ L    Q  ++ ++  T+ ++L   A L +L  G  +HS +  
Sbjct: 28  NAKICKFCEMGDLRNAMKLLSRSQRSELELN--TYCSVLQLCAELKSLEDGKRVHSIISS 85

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
            G+    V+ + L+ MY  CG +     +F  +    +  WN +++ YA+ G+  + + L
Sbjct: 86  NGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGL 145

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415
           FE+++ +  ++ DS TF  VL                     K +     V  C      
Sbjct: 146 FEKMQEL-GIRGDSYTFTCVL---------------------KGFAASAKVREC------ 177

Query: 416 MGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARI 459
                   R    + +LGFGSY  V  +L++A   C +++ ARI
Sbjct: 178 -------KRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARI 214


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 184/577 (31%), Positives = 292/577 (50%), Gaps = 65/577 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P E     ++ A    G + Y   +H  I+K+G L    +  +L+ FY K  +L  A ++
Sbjct: 223 PTELTYASVVNACGSSGEEKYGAMVHGRIIKAG-LEATNLWNSLVTFYGKCGNLQHASQL 281

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE--IYADAYSFTSALAACGQLG 118
           F  I +  VVSWN++I+   Q G+   AL LF  + + E  +  +  +F S L+A   L 
Sbjct: 282 FERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLS 341

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           +L+ G  IH+ I + SLE    I N LI  Y KC  V  A  +F  ++ +DIISWNS++A
Sbjct: 342 ALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLA 401

Query: 179 ASARNGNLELAF------------------------------------------GFLHRL 196
              +N      F                                          G++ R 
Sbjct: 402 GYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRR 461

Query: 197 PNPDTISY---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
             P  +S    N ++   A+F  I DA  I   M + +S SWN+++ GY    +  + L 
Sbjct: 462 ITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLM 521

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-------QGLDASIVVAS 306
           +F ++  +  P+D  + S +L+    L +L  G   H+ V K          D+ + + +
Sbjct: 522 IFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINN 581

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
           AL+ MYSKCG ++ A  +F  + RK++ +W AMITG A +G   + ++LFE++KT   ++
Sbjct: 582 ALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKT-DGIK 640

Query: 367 PDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426
           P+ VTFL +L AC+H  +   + S YF+SM  DYG+ P++EH   MI L G+ G+  RA+
Sbjct: 641 PNQVTFLALLMACAHGGL-VQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAK 699

Query: 427 RMIRELG---FGSYG----VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
            ++ E G   F  Y      +W+ LL A  A   LD+   +A ++++LE + +  Y++L 
Sbjct: 700 SLV-EFGITLFKPYHDDILNLWKVLLGACHASKQLDLGVEAATKILELEPEDEATYILLA 758

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           NLY S G W+ A  +R  MR++GLRKE GCSWI+  N
Sbjct: 759 NLYASSGLWEDAIKVRKAMRDKGLRKEVGCSWIDTGN 795



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 200/430 (46%), Gaps = 54/430 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + L  LL+ S   G    C+QLH + +++GF  +  +  A +  Y +   L DA ++
Sbjct: 119 PNGFSLASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRV 178

Query: 61  FVE--IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADA-YSFTSALAACGQL 117
           F E  +    ++ WNS+I+ Y+  G + + L LF ++    + A    ++ S + ACG  
Sbjct: 179 FDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSS 238

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
           G  + G  +H +I+K  LE    + N L+  YGKCG+++ A  +F  +  KD++SWN++I
Sbjct: 239 GEEKYGAMVHGRIIKAGLE-ATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMI 297

Query: 178 AASARNGNLELAFGFLHRL--------PNP------------------------------ 199
           AA+ + G  E A G   R+        PN                               
Sbjct: 298 AANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLS 357

Query: 200 ---DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
              DT   N +I   ++  ++  A  I   +   +  SWNS+L GY    +      +F 
Sbjct: 358 LEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFK 417

Query: 257 EMQSKDVPMDEYTFSTMLSGI----AGLSALTWGMLIHSCVIKQGLDA--SIVVASALLD 310
            M    +  D ++ + + +      +GL     G  IH  ++++      S+ V++A+L 
Sbjct: 418 RMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILK 477

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DS 369
           MY+K  ++  A+ +F+ +  ++  +WNAM+ GY+RN     V+ +F  L  ++   P D 
Sbjct: 478 MYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIF--LDILKQGFPLDH 535

Query: 370 VTFLNVLAAC 379
           V+   +L +C
Sbjct: 536 VSLSILLTSC 545



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 173/372 (46%), Gaps = 48/372 (12%)

Query: 54  LADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
           L  A ++F   P   V+SW++LI+ Y + G + +A  LF ++    +  + +S  S L  
Sbjct: 71  LKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKV 130

Query: 114 CGQLGSLQLGMAIHSKIVK--YSLERGVVIANCLIDMYGKCGSVEDAIGVFGE--MIDKD 169
               G + L   +H   ++  + L+ G+  A   I MY +CG +EDA  VF E  ++  D
Sbjct: 131 SCSTGEIGLCRQLHGWSIRTGFGLDSGIRAA--WITMYSRCGVLEDAQRVFDETSLLALD 188

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPN-----PDTISYNEVINGI------------- 211
           I+ WNS+IAA   +G          ++ +     P  ++Y  V+N               
Sbjct: 189 ILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVH 248

Query: 212 ---------------------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE 250
                                 + G+++ A  +   +   +  SWN+++     R     
Sbjct: 249 GRIIKAGLEATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGEN 308

Query: 251 ALHLFGEMQSKDVPM--DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
           AL LF  M   + P+  +  TF ++LS ++GLSAL  G  IH+ + +  L+    + ++L
Sbjct: 309 ALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSL 368

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           +  YSKC +V  A  +F  L  +++++WN+M+ GY +N    +  ++F+++  +  ++PD
Sbjct: 369 ITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRM-MLSGIEPD 427

Query: 369 SVTFLNVLAACS 380
           S +   +  A S
Sbjct: 428 SHSLTIIFNAAS 439



 Score = 38.9 bits (89), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 30/144 (20%), Positives = 73/144 (50%), Gaps = 6/144 (4%)

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           S  L   S+  +++ A  +F +   +++++W+A+I  Y+R G+  +   LF+++     L
Sbjct: 59  SKFLVSQSEHERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMG-EGL 117

Query: 366 QPDSVTFLNVL-AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424
           QP+  +  ++L  +CS  +I   +    + S+   +G+   +    + I +  + G +  
Sbjct: 118 QPNGFSLASLLKVSCSTGEIGLCRQLHGW-SIRTGFGLDSGIR--AAWITMYSRCGVLED 174

Query: 425 AQRMIRELGFGSYGV-VWRALLSA 447
           AQR+  E    +  + +W ++++A
Sbjct: 175 AQRVFDETSLLALDILLWNSIIAA 198


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 167/541 (30%), Positives = 281/541 (51%), Gaps = 48/541 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H Y +K G   +VFVS AL+  Y K   + DA  +F  + +  VV WN ++ GYVQ 
Sbjct: 203 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 262

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS--LQLGMAIHSKIVKYSLERGVV 140
           G  ++A  LF E  RS +  D +S    L  C   G+  L+LG  +H   VK  L+  V 
Sbjct: 263 GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVS 322

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRL 196
           +AN L++MY K G    A  VF +M   D+ISWNS+I++ A++     ++ L    LH  
Sbjct: 323 VANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEG 382

Query: 197 PNPDTISYNEVINGIA----------------------------------------QFGD 216
             PD  +   +    A                                        + GD
Sbjct: 383 LKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGD 442

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           + +A ++ + + +P+  +W S+++G V+     +AL ++  M+   V  DEYTF+T++  
Sbjct: 443 MVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKA 502

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            + ++AL  G  +H+ VIK    +   V ++L+DMY+KCG +E A  +F+ +  +N+  W
Sbjct: 503 SSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALW 562

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           NAM+ G A++G+  + + LF+ +K+   ++PD V+F+ +L+ACSH  +   +  EY  SM
Sbjct: 563 NAMLVGLAQHGNAEEAVNLFKSMKS-HGIEPDRVSFIGILSACSHAGLT-SEAYEYLHSM 620

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
             DYGI+P +EH   ++  +G+ G V  A ++I  + F +   + RALL A     D++ 
Sbjct: 621 PNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVET 680

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            +  AA +  LE      YV+L N+Y +   WD  +  R  M+ + ++K+ G SWI+V+N
Sbjct: 681 GKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKN 740

Query: 517 V 517
           +
Sbjct: 741 M 741



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 182/406 (44%), Gaps = 52/406 (12%)

Query: 26  HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS--- 82
           H  I+ SG   + F+S  L+  Y K  SL+ A ++F   P+  +V+WN+++  Y  S   
Sbjct: 100 HARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDS 159

Query: 83  --GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
             G  ++ L+LF  L  S       +    L  C   G L     +H   +K  LE  V 
Sbjct: 160 NDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVF 219

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF---LHRLP 197
           ++  L+++Y KCG + DA  +F  M ++D++ WN ++    + G  + AF      HR  
Sbjct: 220 VSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSG 279

Query: 198 -NPDTISYNEVINGIAQFG--DIE-----DAIMILSSMPSPNSS---------------- 233
             PD  S   ++NG    G  D+E       I + S + S  S                 
Sbjct: 280 LRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYF 339

Query: 234 --------------SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
                         SWNS+++     +   E+++LF ++  + +  D +T +++    A 
Sbjct: 340 AREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAA 399

Query: 280 -----LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
                L  L  G  IH+  IK G D+ + V S +LDMY KCG +  A  +F  +   + V
Sbjct: 400 KACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDV 459

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            W +MI+G   NG+  + + ++ +++  R + PD  TF  ++ A S
Sbjct: 460 AWTSMISGCVDNGNEDQALRIYHRMRQSR-VMPDEYTFATLIKASS 504



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 187/469 (39%), Gaps = 85/469 (18%)

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           +L LG   H++IV         ++N L+ MY KCGS+  A  VF    ++D+++WN+++ 
Sbjct: 92  NLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILG 151

Query: 179 ASA-----RNGN----------LELAFGFLHRLP-NP----------------------- 199
           A A      +GN          L  + G   R+   P                       
Sbjct: 152 AYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIK 211

Query: 200 -----DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
                D      ++N  ++ G + DA ++   M   +   WN +L GYV      EA  L
Sbjct: 212 IGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQL 271

Query: 255 FGEMQSKDVPMDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
           F E     +  DE++   +L+G   AG   L  G  +H   +K GLD+ + VA++L++MY
Sbjct: 272 FSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMY 331

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD---- 368
           SK G    A  +F  +   +L++WN+MI+  A++    + + LF  L     L+PD    
Sbjct: 332 SKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLH-EGLKPDHFTL 390

Query: 369 -SVTFLNVLAAC-------SHTDIPFDKVSEYFES-MTKDYGIKPTVEHCCSMIRL---- 415
            S+T      AC           I    +   F+S +  + GI      C  M+      
Sbjct: 391 ASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVF 450

Query: 416 --------------------MGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLD 455
                                G + +  R    +R+         +  L+ AS   + L+
Sbjct: 451 NYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALE 510

Query: 456 VARISAAEVIKLEGDSD-YVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
             R   A VIKL+  SD +V   L ++Y   GN + A  +   M  R +
Sbjct: 511 QGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNI 559



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 99/189 (52%), Gaps = 2/189 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+EY    L++ASS +      +QLH  ++K   +S+ FV T+L+  Y K  ++ DA+++
Sbjct: 491 PDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRL 550

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG-S 119
           F ++   ++  WN+++ G  Q G   +A+NLF  ++   I  D  SF   L+AC   G +
Sbjct: 551 FKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLT 610

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            +    +HS    Y +E  +   +CL+D  G+ G V++A  V   M  K   S N  +  
Sbjct: 611 SEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLG 670

Query: 180 SAR-NGNLE 187
           + R  G++E
Sbjct: 671 ACRIQGDVE 679


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 168/558 (30%), Positives = 291/558 (52%), Gaps = 50/558 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A   LG   Y +++H ++LK+G + +VFV ++LM  Y K +   DA K+
Sbjct: 104 PDFYTYPVVLKACGGLGRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKL 163

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E PQ  V  WN++IS Y + GK   AL  F +++      ++ +FT  +++C +L +L
Sbjct: 164 FDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNL 223

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H ++++  +     + + L+DMYGKCG +E A  VF ++  K+ I+WN++I   
Sbjct: 224 ERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGY 283

Query: 181 ARNGNLELAFGFLHRLPNPDT-------------------ISYNEVINGIA--------- 212
           +  G+       L R+ +  T                   + + + I+G           
Sbjct: 284 SLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDI 343

Query: 213 -----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                      + G +  A  I  ++      SWN +++G+V      +ALH++  M+  
Sbjct: 344 FIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEH 403

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  D  TFS+ LS  + L+AL  G  +H C+I   L+A+ +V  ALLDMY+KCG V+ A
Sbjct: 404 HVKPDALTFSSTLSACSQLAALDKGRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEA 463

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  L +++LV+W +MI  Y  +G  ++ + LF++++ + +++ DSVTFL VL+ACSH
Sbjct: 464 RKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQKL-NVRADSVTFLAVLSACSH 522

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR-----ELGFGS 436
             +  D+   YF  M   Y IKP +EH   +I L+G+ G +  A  +++         G 
Sbjct: 523 AGL-VDEGYMYFNEMVVQYDIKPGIEHYSCLIDLLGRAGRLHEAYEILQRSKETRSDIGL 581

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
              ++ A L  +     + + ++    +I+++ D    Y++L N+Y S   WD    +R 
Sbjct: 582 LSTLFSACLLHNNFVLGIQIGKM----LIEVDPDDPSTYILLSNMYASVNKWDEVRKVRR 637

Query: 497 FMRERGLRKEAGCSWIEV 514
            M+E GL+K  GCSWIE+
Sbjct: 638 KMKELGLKKSPGCSWIEI 655



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 196/398 (49%), Gaps = 42/398 (10%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVS-WNSLISGYVQSG 83
           +H  I   GF SN+ +S +L+GFY   +  A A  +F     P  VS WN+L+S Y  + 
Sbjct: 25  IHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTNDCPLDVSLWNALLSAYTNNF 84

Query: 84  KYRKALNLFVELE-RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           ++ +AL LF +L   S +  D Y++   L ACG LG +  G  IH+ ++K  L   V + 
Sbjct: 85  RFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHLLKTGLIWDVFVG 144

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
           + L++MY KC    DAI +F E   +D+  WN+VI+   ++G  E+A     ++      
Sbjct: 145 SSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFE 204

Query: 199 PDTISYNEVINGIAQF-----------------------------------GDIEDAIMI 223
           P+++++  V++   +                                    G +E A  +
Sbjct: 205 PNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEV 264

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +P  N+ +WN+++TGY  +      + L   M  +       T ++++   +    L
Sbjct: 265 FEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQL 324

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH  +++  +D  I +  +L+D Y KCG V  A+++FR++ +  +V+WN MI+G+
Sbjct: 325 RHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGH 384

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              G+  + + +++ +K    ++PD++TF + L+ACS 
Sbjct: 385 VMVGNHIQALHIYDNMKE-HHVKPDALTFSSTLSACSQ 421



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 132/321 (41%), Gaps = 42/321 (13%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
           D  +  SAL  C     L+ G  IH +I     +  +V++  LI  Y  C     A  VF
Sbjct: 2   DYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVF 61

Query: 163 GEM-IDKDIISWNSVIAASARNGNLELAFGFLHRLP-----NPDTISYNEVINGIAQFGD 216
                  D+  WN++++A   N     A     +L       PD  +Y  V+      G 
Sbjct: 62  QTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGR 121

Query: 217 I-----------------------------------EDAIMILSSMPSPNSSSWNSILTG 241
           +                                    DAI +    P  +   WN++++ 
Sbjct: 122 VIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISC 181

Query: 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
           Y    +   AL  F +M+      +  TF+ ++S    L  L  G  +H  +I++ +   
Sbjct: 182 YFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLD 241

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
             V SAL+DMY KCG +E+A  +F  + RKN +TWNAMITGY+  GD    IEL  ++  
Sbjct: 242 AFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMND 301

Query: 362 VRDLQPDSVTFLNVLAACSHT 382
               +P  +T  +++ A S +
Sbjct: 302 -EGTKPTLMTLTSIIYASSRS 321



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
           MD  T  + L        L  G LIH  +   G  ++IV++ +L+  Y  C     A+ +
Sbjct: 1   MDYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELV 60

Query: 325 FRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           F++  C  ++  WNA+++ Y  N    + ++LF+QL     ++PD  T+  VL AC
Sbjct: 61  FQTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKAC 116


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 162/541 (29%), Positives = 298/541 (55%), Gaps = 52/541 (9%)

Query: 23   QQLHCYILKSGFL-SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
            Q++H Y+ +SG + + + +  AL+  Y K  ++ +A  +F  +P    VSWNS+ISG   
Sbjct: 475  QEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDH 534

Query: 82   SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
            + ++ +A++ F  ++R+ +    +S  S L++C  LG L LG  IH +  K+ L+  V +
Sbjct: 535  NERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSV 594

Query: 142  ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR--NGNLELAFGFLHRLP-- 197
            +N L+ +Y +  S+ +   VF +M + D +SWNS I A A+     L+    FL  +   
Sbjct: 595  SNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAG 654

Query: 198  -NPDTISYNEVINGIAQFG-----------------------------------DIEDAI 221
              P+ +++  ++  ++ F                                     +ED  
Sbjct: 655  WRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCE 714

Query: 222  MILSSMPS-PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
            +I S M    +  SWNS+++GY++   + +A+ L   M  +   +D +TF+T+LS  A +
Sbjct: 715  IIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASV 774

Query: 281  SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
            + L  GM +H+C ++  L++ +VV SAL+DMY+KCG+++ A   F  +  +N+ +WN+MI
Sbjct: 775  ATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMI 834

Query: 341  TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
            +GYAR+G   K +++F ++K      PD VTF+ VL+ACSH  +  D+  ++F+SM + Y
Sbjct: 835  SGYARHGHGQKALKIFTRMKQ-HGQSPDHVTFVGVLSACSHVGL-VDEGYKHFKSMGEVY 892

Query: 401  GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC-----SDLD 455
            G+ P +EH   M+ L+G+ G+V + +  I+ +      ++WR +L   GAC      + +
Sbjct: 893  GLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVL---GACCRANGRNTE 949

Query: 456  VARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
            + + +A  +I+LE  +   YV+L N++ + GNW+     R  MR+  ++K+AGCSW+ ++
Sbjct: 950  LGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMK 1009

Query: 516  N 516
            +
Sbjct: 1010 D 1010



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 206/410 (50%), Gaps = 55/410 (13%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
            LH  + K+GF  +VF    L+  Y +I +L  A K+F E+PQ ++VSW+ LISGY Q+ 
Sbjct: 161 HLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNR 220

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGS--LQLGMAIHSKIVKYSLERGVVI 141
              +A +LF  +  S +  + ++  SAL AC Q GS  ++LGM IH+ I K      +++
Sbjct: 221 MPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMIL 280

Query: 142 ANCLIDMYGKC-GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF-------- 192
           +N L+ MY  C GS++DA  VF E+  ++ ++WNS+I+   R G+   AF          
Sbjct: 281 SNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEG 340

Query: 193 --LHRLPNPDTISY-----------------------------------NEVINGIAQFG 215
             L+  PN  T+                                     + ++NG A++G
Sbjct: 341 VELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYG 400

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275
            ++ A MI   M   N+ + N ++ G   +++  EA  +F EM+   V ++  +   +LS
Sbjct: 401 LMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDL-VEINSESLVVLLS 459

Query: 276 GIAGLSALT----WGMLIHSCVIKQGL-DASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
                S L      G  +H+ + + GL DA I + +AL++MY KC  ++ A S+F+ +  
Sbjct: 460 TFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPS 519

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           K+ V+WN+MI+G   N    + +  F  +K    + P + + ++ L++CS
Sbjct: 520 KDTVSWNSMISGLDHNERFEEAVSCFHTMKR-NGMVPSNFSVISTLSSCS 568



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 183/413 (44%), Gaps = 46/413 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + +   L + S LGW T  +Q+H    K G   +V VS AL+  Y + +S+ +  K+
Sbjct: 555 PSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKV 614

Query: 61  FVEIPQPSVVSWNSLISGYVQ-SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F ++P+   VSWNS I    +      +AL  F+E+ ++    +  +F + LAA      
Sbjct: 615 FFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSV 674

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIA 178
           L LG  IH+ I+KYS+     I N L+  YGKC  +ED   +F  M + +D +SWNS+I+
Sbjct: 675 LGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMIS 734

Query: 179 ASARNGNL----ELAFGFLHRLPNPDTISYNEVINGI----------------------- 211
               +G L    +L +  + R    D  ++  V++                         
Sbjct: 735 GYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLES 794

Query: 212 ------------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                       A+ G I+ A      MP  N  SWNS+++GY       +AL +F  M+
Sbjct: 795 DVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMK 854

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGML-IHSCVIKQGLDASIVVASALLDMYSKCGQV 318
                 D  TF  +LS  + +  +  G     S     GL   I   S ++D+  + G V
Sbjct: 855 QHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDV 914

Query: 319 EIADSMFRSL-CRKNLVTWNAMITGYAR-NGDLTKVIELFEQLKTVRDLQPDS 369
           +  +   +++    N++ W  ++    R NG  T++ +     K + +L+P +
Sbjct: 915 KKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQ--RAAKMLIELEPQN 965



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 194/435 (44%), Gaps = 58/435 (13%)

Query: 1   PNEYVLFHLLRASSDLGWD--TYCQQLHCYILKSGFLSNVFVSTALMGFYRKIN-SLADA 57
           PN + +   LRA    G        Q+H +I K   +S++ +S  LM  Y   + S+ DA
Sbjct: 239 PNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDA 298

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF--VELERSE--IYADAYSFTS---- 109
           H++F EI   + V+WNS+IS Y + G    A  LF  +++E  E  +  + Y+  S    
Sbjct: 299 HRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTA 358

Query: 110 --ALAACGQ---------------LGSLQLGMAIHSKIVKYSL------------ERGVV 140
             +LA CG                L  L +G A+ +   +Y L            +R  V
Sbjct: 359 ACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAV 418

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV--------------IAASARNGNL 186
             N L+    +    E+A  VF EM  KD++  NS               +    R G  
Sbjct: 419 TMNGLMVGLARQHQGEEAAKVFKEM--KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQE 476

Query: 187 ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246
             A+ F   L +      N ++N   +   I++A  +   MPS ++ SWNS+++G  +  
Sbjct: 477 VHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNE 536

Query: 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
           R  EA+  F  M+   +    ++  + LS  + L  LT G  IH    K GLD  + V++
Sbjct: 537 RFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSN 596

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR-NGDLTKVIELFEQLKTVRDL 365
           ALL +Y++   +     +F  +   + V+WN+ I   A+    + + ++ F ++      
Sbjct: 597 ALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQA-GW 655

Query: 366 QPDSVTFLNVLAACS 380
           +P+ VTF+N+LAA S
Sbjct: 656 RPNRVTFINILAAVS 670



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 156/362 (43%), Gaps = 65/362 (17%)

Query: 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN-- 183
           +H ++ K      V   N LI++Y + G++  A  +F EM  K+++SW+ +I+   +N  
Sbjct: 162 LHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRM 221

Query: 184 ---------------------------------GNLELAFG-----FLHRLPN-PDTISY 204
                                            G+  +  G     F+ +LP   D I  
Sbjct: 222 PDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILS 281

Query: 205 NEVINGIAQF-GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
           N +++  +   G I+DA  +   +   NS +WNSI++ Y  R     A  LF  MQ + V
Sbjct: 282 NVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGV 341

Query: 264 PMD----EYTFSTMLSGIAGLSALTWGML--IHSCVIKQGLDASIVVASALLDMYSKCGQ 317
            ++    EYT  ++++    L+     +L  + + + K G    + V SAL++ +++ G 
Sbjct: 342 ELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGL 401

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS-VTFLNVL 376
           ++ A  +F+ +  +N VT N ++ G AR     +  ++F+++K + ++  +S V  L+  
Sbjct: 402 MDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLLSTF 461

Query: 377 AACSHTDIPFDKVSE----YFESMTKD------------YGIKPTVEHCCSMIRLMGQKG 420
              S+      K  E     F S   D            YG    +++ CS+ +LM  K 
Sbjct: 462 TEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKD 521

Query: 421 EV 422
            V
Sbjct: 522 TV 523



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 10/125 (8%)

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           ++Q  D   D Y  S+ L     L         H  + K G    +   + L+++Y + G
Sbjct: 139 QLQQLDSEFDRYKTSSSLYDANHL---------HLQLYKTGFTDDVFFCNTLINIYVRIG 189

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            +  A  +F  + +KNLV+W+ +I+GY +N    +   LF+ + +   L P+     + L
Sbjct: 190 NLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVIS-SGLLPNHFAVGSAL 248

Query: 377 AACSH 381
            AC  
Sbjct: 249 RACQQ 253


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 169/556 (30%), Positives = 280/556 (50%), Gaps = 73/556 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDT--YCQQLHCYILKSGFLSNVFVSTALMGFYRKINS---LA 55
           P++Y    LL A   L   +  +C QLHC +LKSG    + V  AL+  Y K  S     
Sbjct: 155 PDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATR 214

Query: 56  DAHKMFVEIPQP----------------------SV---------VSWNSLISGYVQSGK 84
           DA K+  E+P                        SV         V WN++ISGYV SG 
Sbjct: 215 DARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGM 274

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK----YSLERGVV 140
             +A  LF  +    +  D ++FTS L+AC  +G    G ++H +I++    +  E  + 
Sbjct: 275 AVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALP 334

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           + N L+  Y KCG++  A  +F  M  KD++SW                           
Sbjct: 335 VNNALVTFYSKCGNIAVARRIFDNMTLKDVVSW--------------------------- 367

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +++G  +   ++ A+ +   MP  N  SW  +++GYV+     +AL LF +M+S
Sbjct: 368 ----NTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRS 423

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           ++V   +YT++  ++    L AL  G  +H  +++ G + S    +AL+ MY++CG V+ 
Sbjct: 424 ENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKE 483

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  MF  +   + V+WNAMI+   ++G   + +ELF+++     + PD ++FL VL AC+
Sbjct: 484 AHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRM-VAEGIYPDRISFLTVLTACN 542

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H+ +  D+   YFESM +D+GI P  +H   +I L+G+ G +  A+ +I+ + F     +
Sbjct: 543 HSGL-VDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSI 601

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W A+LS      D+++   +A ++ K+    D  Y++L N Y++ G W  A+ +R  MR+
Sbjct: 602 WEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRD 661

Query: 501 RGLRKEAGCSWIEVEN 516
           RG++KE GCSWIE  N
Sbjct: 662 RGVKKEPGCSWIEAGN 677



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 205/434 (47%), Gaps = 53/434 (12%)

Query: 41  STALMGFYRKINSLADAHKMFVEIP--QPSVVSWNSLISGYVQSGKYRKALNLFVELERS 98
           +T+L+  Y   + L  A   F  +P  +   V  N++IS Y ++     A+ +F  L  S
Sbjct: 91  ATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLAS 150

Query: 99  -EIYADAYSFTSALAACGQLG--SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
             +  D YSFT+ L+A G L   S++    +H  ++K      + + N L+ +Y KC S 
Sbjct: 151 GSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESP 210

Query: 156 E---DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIA 212
           E   DA  V  EM +KD ++W +++    R G++  A             S  E ++G  
Sbjct: 211 EATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAAR------------SVFEEVDG-- 256

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
           +F  +                 WN++++GYV+     EA  LF  M  + VP+DE+TF++
Sbjct: 257 KFDVV-----------------WNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTS 299

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQG----LDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           +LS  A +     G  +H  +I+       +A++ V +AL+  YSKCG + +A  +F ++
Sbjct: 300 VLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNM 359

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDK 388
             K++V+WN +++GY  +  L K +E+FE++    +L     +++ +++   H     D 
Sbjct: 360 TLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNEL-----SWMVMVSGYVHGGFAEDA 414

Query: 389 VSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM---IRELGFGSYGVVWRALL 445
           + + F  M  +  +KP        I   G+ G +   +++   I +LGF        AL+
Sbjct: 415 L-KLFNKMRSE-NVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALI 472

Query: 446 SASGACSDLDVARI 459
           +    C  +  A +
Sbjct: 473 TMYARCGAVKEAHL 486



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSL--CRKNLVTWNAMITGYARNGDLTKVIELF 356
           D   V A++L+  Y+   ++  A S F ++   R++ V  NA+I+ YAR       + +F
Sbjct: 85  DPCPVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVF 144

Query: 357 EQLKTVRDLQPDSVTFLNVLAACSH 381
             L     L+PD  +F  +L+A  H
Sbjct: 145 RSLLASGSLRPDDYSFTALLSAGGH 169


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 166/555 (29%), Positives = 278/555 (50%), Gaps = 41/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  L+ A S  G     QQLH Y  K GF SN  +  AL+  Y K + +  A   
Sbjct: 370 PDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNY 429

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F+E    +VV WN ++  Y      R +  +F +++  EI  + Y++ S L  C +LG L
Sbjct: 430 FLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDL 489

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IHS+I+K S +    + + LIDMY K G ++ A  +      KD++SW ++IA  
Sbjct: 490 ELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGY 549

Query: 181 ARNG-------------------------NLELAFGFLHRLPNPDTISYNEVINGIA--- 212
            +                           N   A   L  L     I     ++G +   
Sbjct: 550 TQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDL 609

Query: 213 -----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                      + G+IE+A +      + ++ +WN++++G+       EAL +F  M  +
Sbjct: 610 PFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNRE 669

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  + +TF + +   +  + +  G  +H+ + K G D+   V +A++ MY+KCG +  A
Sbjct: 670 GIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDA 729

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F  L  KN V+WNAMI  Y+++G  ++ ++ F+Q+    +++P+ VT + VL+ACSH
Sbjct: 730 KKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQM-IHSNVRPNHVTLVGVLSACSH 788

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  DK  EYFESM  +YG+ P  EH   ++ ++ + G + RA+  I E+      +VW
Sbjct: 789 IGL-VDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVW 847

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LLSA     ++++   +A  +++LE +    YV+L NLY     WD   + R  M+E+
Sbjct: 848 RTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEK 907

Query: 502 GLRKEAGCSWIEVEN 516
           G++KE G SWIEV+N
Sbjct: 908 GVKKEPGQSWIEVKN 922



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/486 (24%), Positives = 213/486 (43%), Gaps = 43/486 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  Y    +L A   +      +QLH  +LK GF S+ +V  AL+  Y  + SL  A  +
Sbjct: 269 PTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHI 328

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + Q   V++N+LI+G  Q G   KA+ LF  ++   +  D+ +  S + AC   G+L
Sbjct: 329 FSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTL 388

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H+   K        I   L+++Y KC  +E A+  F E   ++++ WN ++ A 
Sbjct: 389 FSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAY 448

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIE------------------ 218
               +L  +F    ++      P+  +Y  ++    + GD+E                  
Sbjct: 449 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNA 508

Query: 219 -----------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                             A  IL      +  SW +++ GY   N   +AL  F +M  +
Sbjct: 509 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 568

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  DE   +  +S  AGL AL  G  IH+     G  + +   +AL+ +YSKCG +E A
Sbjct: 569 GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEA 628

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F      + + WNA+++G+ ++G+  + + +F ++     +  ++ TF + + A S 
Sbjct: 629 YLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNR-EGIDSNNFTFGSAVKAASE 687

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           T     K  +   ++    G     E C ++I +  + G +  A++   EL   +  V W
Sbjct: 688 T--ANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKN-EVSW 744

Query: 442 RALLSA 447
            A+++A
Sbjct: 745 NAMINA 750



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 189/421 (44%), Gaps = 43/421 (10%)

Query: 1   PNEYVLFHLLRA--SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           PNE     +L A     + +D   +Q+H  I+  G   +  V   L+  Y +   +  A 
Sbjct: 167 PNEGTFSGVLEACRGGSVAFDV-VEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRAR 225

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           ++F  +      SW ++ISG  ++    +A+ LF ++    I    Y+F+S L+AC ++ 
Sbjct: 226 RVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 285

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           SL++G  +H  ++K        + N L+ +Y   GS+  A  +F  M  +D +++N++I 
Sbjct: 286 SLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLIN 345

Query: 179 ASARNGNLELAFGFLHRL------PNPDTI----------------------------SY 204
             ++ G  E A     R+      P+ +T+                            + 
Sbjct: 346 GLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFAS 405

Query: 205 NEVINGI-----AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           N+ I G      A+  DIE A+         N   WN +L  Y   + +  +  +F +MQ
Sbjct: 406 NDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQ 465

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            +++  ++YT+ ++L     L  L  G  IHS +IK     +  V S L+DMY+K G+++
Sbjct: 466 IEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLD 525

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +      K++V+W  MI GY +     K +  F Q+   R ++ D V   N ++AC
Sbjct: 526 TAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLD-RGIRSDEVGLTNAVSAC 584

Query: 380 S 380
           +
Sbjct: 585 A 585



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 179/397 (45%), Gaps = 41/397 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           ++LH  ILK GF +N  +S  L+ FY     L  A K+F E+P+ ++ +WN +I      
Sbjct: 88  RKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASR 147

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAAC-GQLGSLQLGMAIHSKIVKYSLERGVVI 141
               K   LF  +    +  +  +F+  L AC G   +  +   IH++I+   L +  ++
Sbjct: 148 SLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIV 207

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN----------------GN 185
            N LID+Y + G V+ A  VF  +  KD  SW ++I+  ++N                G 
Sbjct: 208 CNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGI 267

Query: 186 LELAFGF------------------LHRLP-----NPDTISYNEVINGIAQFGDIEDAIM 222
           +   + F                  LH L      + DT   N +++     G +  A  
Sbjct: 268 MPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEH 327

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           I S+M   ++ ++N+++ G        +A+ LF  MQ   +  D  T ++++   +    
Sbjct: 328 IFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGT 387

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G  +H+   K G  ++  +  ALL++Y+KC  +E A + F     +N+V WN M+  
Sbjct: 388 LFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVA 447

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           Y    DL     +F Q++ + ++ P+  T+ ++L  C
Sbjct: 448 YGLLDDLRNSFRIFRQMQ-IEEIVPNQYTYPSILKTC 483



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 171/377 (45%), Gaps = 44/377 (11%)

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
           GSL  G  +HS+I+K   +    ++  L+D Y   G ++ A+ VF EM ++ I +WN +I
Sbjct: 82  GSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMI 141

Query: 178 ---AASARNGNLELAFGFL---HRLPNPDTIS---------------------------- 203
              A+ + +G +   FG +   +  PN  T S                            
Sbjct: 142 KELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGL 201

Query: 204 ------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
                  N +I+  ++ G ++ A  +   +   + SSW ++++G        EA+ LF +
Sbjct: 202 GKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCD 261

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M    +    Y FS++LS    + +L  G  +H  V+K G  +   V +AL+ +Y   G 
Sbjct: 262 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGS 321

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +  A+ +F ++ +++ VT+N +I G ++ G   K +ELF++++ +  L+PDS T  +++ 
Sbjct: 322 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQ-LDGLEPDSNTLASLVV 380

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           ACS     F    +   + T   G     +   +++ L  +  ++  A     E    + 
Sbjct: 381 ACSSDGTLFS--GQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENV 438

Query: 438 GVVWRALLSASGACSDL 454
            V+W  +L A G   DL
Sbjct: 439 -VLWNVMLVAYGLLDDL 454


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 163/533 (30%), Positives = 279/533 (52%), Gaps = 42/533 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H  ILKSG   N ++   L+  Y K  SL DA ++F  I   ++VSW ++I  +V  
Sbjct: 67  REVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAG 126

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            K  +A   +  ++ +    D  +F S L A      LQLG  +H +IV+  LE    + 
Sbjct: 127 NKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG 186

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
             L+ MY KCG +  A  +F  + +K++++W  +IA  A+ G +++A   L  +      
Sbjct: 187 TSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVA 246

Query: 199 PDTISYNEVINGIA-----------------------------------QFGDIEDAIMI 223
           P+ I++  ++ G                                     + G +E+A  +
Sbjct: 247 PNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKL 306

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
            S +P  +  +W +++TGY       EA++LF  MQ + +  D+ TF+++L+  +  + L
Sbjct: 307 FSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFL 366

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG- 342
             G  IH  ++  G +  + + SAL+ MY+KCG ++ A  +F  +  +N+V W A+ITG 
Sbjct: 367 QEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGC 426

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
            A++G   + +E F+Q+K  + ++PD VTF +VL+AC+H  +  ++  ++F SM  DYGI
Sbjct: 427 CAQHGRCREALEYFDQMKK-QGIKPDKVTFTSVLSACTHVGL-VEEGRKHFRSMYLDYGI 484

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
           KP VEH    + L+G+ G +  A+ +I  + F     VW ALLSA    SD++    +A 
Sbjct: 485 KPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAE 544

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
            V+KL+ D D  YV L ++Y + G ++ A  +R  M +R + KE G SWIEV+
Sbjct: 545 NVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVD 597



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 187/375 (49%), Gaps = 62/375 (16%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF--VELERSEIYADAY 105
           +RK+ +LA++                  +S   ++G+ ++AL +   + L+ + +Y+D  
Sbjct: 7   FRKVETLANSRD----------------VSVLCKTGRLKEALGIMNTMILQGTRVYSDV- 49

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
            F   L  C +L SL+ G  +H+ I+K  ++    + N L+ MY KCGS+ DA  VF  +
Sbjct: 50  -FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSI 108

Query: 166 IDKDIISWNSVIAA-SARNGNLELAFGFLHRLP----NPDTISYNEVINGI--------- 211
            D++I+SW ++I A  A N NLE AF     +      PD +++  ++N           
Sbjct: 109 RDRNIVSWTAMIEAFVAGNKNLE-AFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLG 167

Query: 212 --------------------------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245
                                     A+ GDI  A +I   +P  N  +W  ++ GY  +
Sbjct: 168 QKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQ 227

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
            +V  AL L   MQ  +V  ++ TF+++L G    +AL  G  +H  +I+ G    + V 
Sbjct: 228 GQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVV 287

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           ++L+ MY KCG +E A  +F  L  +++VTW AM+TGYA+ G   + I LF +++  + +
Sbjct: 288 NSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQ-QGI 346

Query: 366 QPDSVTFLNVLAACS 380
           +PD +TF +VL +CS
Sbjct: 347 KPDKMTFTSVLTSCS 361



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 172/369 (46%), Gaps = 41/369 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++     LL A ++       Q++H  I+++G      V T+L+G Y K   ++ A  +
Sbjct: 146 PDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVI 205

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+ +VV+W  LI+GY Q G+   AL L   ++++E+  +  +F S L  C    +L
Sbjct: 206 FDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAAL 265

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H  I++    R + + N LI MY KCG +E+A  +F ++  +D+++W +++   
Sbjct: 266 EHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGY 325

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGI------------------------- 211
           A+ G  + A     R+      PD +++  V+                            
Sbjct: 326 AQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDV 385

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTG-YVNRNRVPEALHLFGEMQS 260
                     A+ G ++DA ++ + M   N  +W +I+TG      R  EAL  F +M+ 
Sbjct: 386 YLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKK 445

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGML-IHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           + +  D+ TF+++LS    +  +  G     S  +  G+   +   S  +D+  + G +E
Sbjct: 446 QGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLE 505

Query: 320 IADSMFRSL 328
            A+++  S+
Sbjct: 506 EAENVILSM 514



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 104/211 (49%), Gaps = 4/211 (1%)

Query: 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
           R+ EAL +   M  +   +    F  +L   A L +L  G  +H+ ++K G+  +  + +
Sbjct: 27  RLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLEN 86

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
            LL MY+KCG +  A  +F S+  +N+V+W AMI  +       +  + +E +K +   +
Sbjct: 87  TLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMK-LAGCK 145

Query: 367 PDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426
           PD VTF+++L A ++ ++       + E +     ++P V    S++ +  + G++ +A+
Sbjct: 146 PDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYAKCGDISKAR 203

Query: 427 RMIRELGFGSYGVVWRALLSASGACSDLDVA 457
            +   L   +  V W  L++       +DVA
Sbjct: 204 VIFDRLPEKNV-VTWTLLIAGYAQQGQVDVA 233


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 164/555 (29%), Positives = 296/555 (53%), Gaps = 42/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ YV+  +L A S L +    +Q+H Y+L+ GF  +V V   ++ FY K + +    K+
Sbjct: 253 PDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKL 312

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VVSW ++I+G +Q+  +  A++LFVE+ R     DA+  TS L +CG L +L
Sbjct: 313 FNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQAL 372

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           Q G  +H+  +K +++    + N LIDMY KC S+ +A  VF  +   +++S+N++I   
Sbjct: 373 QKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGY 432

Query: 181 ARNGNLELAFGFLHR----LPNP-----------------------------------DT 201
           +R   L  A          L  P                                   D+
Sbjct: 433 SRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVSLDS 492

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
            + + +I+  ++   + DA ++   +   +   WN++ +GY  +    E+L L+ ++Q  
Sbjct: 493 FAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMS 552

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  +E+TF+ +++  + +++L  G   H+ VIK GLD    V ++L+DMY+KCG +E +
Sbjct: 553 RLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEES 612

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F S  ++++  WN+MI+ YA++GD  K +E+FE++  +  ++P+ VTF+ +L+ACSH
Sbjct: 613 HKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERM-IMEGVKPNYVTFVGLLSACSH 671

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  D    +FESM+K +GI+P ++H   M+ L+G+ G+++ A+  ++++      VVW
Sbjct: 672 AGL-LDLGFHHFESMSK-FGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAVVW 729

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R+LLSA      +++   +A   I  +      Y++L N++ S G W    ++R  M   
Sbjct: 730 RSLLSACRVSGHVELGTYAAEMAISCDPADSGSYILLSNIFASKGMWASVRMVREKMDMS 789

Query: 502 GLRKEAGCSWIEVEN 516
            + KE G SWIEV N
Sbjct: 790 RVVKEPGWSWIEVNN 804



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/421 (29%), Positives = 218/421 (51%), Gaps = 42/421 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNEY+L  ++RA + LG  +   QLH +++K GF+ +V+V T+L+ FY K   + +A  +
Sbjct: 152 PNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLI 211

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   + V+W ++I+GY + G+   +L LF ++   ++Y D Y  +S L+AC  L  L
Sbjct: 212 FDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFL 271

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH  +++   +  V + N +ID Y KC  V+    +F  ++DKD++SW ++IA  
Sbjct: 272 EGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGC 331

Query: 181 ARN--------------------------------GNLEL--------AFGFLHRLPNPD 200
            +N                                G+L+         A+     + N D
Sbjct: 332 MQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDD 391

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +  N +I+  A+   + +A  +   + + N  S+N+++ GY  ++++ EAL LF EM+ 
Sbjct: 392 FVK-NGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRL 450

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
              P    TF ++L   + L  L     IH  +IK G+       SAL+D+YSKC  V  
Sbjct: 451 SLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGD 510

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  +  +++V WNAM +GY++  +  + ++L++ L+  R L+P+  TF  V+AA S
Sbjct: 511 ARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSR-LKPNEFTFAAVIAAAS 569

Query: 381 H 381
           +
Sbjct: 570 N 570



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 185/381 (48%), Gaps = 41/381 (10%)

Query: 21  YCQQLHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79
           Y +++H +I+  GF   +VF+   L+  Y K+N  +DA K+F  +P  ++V+W+S++S Y
Sbjct: 69  YYKKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMY 128

Query: 80  VQSGKYRKALNLFVELERS-EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
            Q G   +AL LF    RS     + Y   S + AC QLG+L   + +H  +VK    + 
Sbjct: 129 TQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQD 188

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN 198
           V +   LID Y K G V++A  +F  +  K  ++W ++IA  A+ G  E++    +++  
Sbjct: 189 VYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMRE 248

Query: 199 PDT----------------ISYNE-------------------VINGIAQF----GDIED 219
            D                 + + E                   V+NGI  F      ++ 
Sbjct: 249 GDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKT 308

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
              + + +   +  SW +++ G +  +   +A+ LF EM  K    D +  +++L+    
Sbjct: 309 GRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGS 368

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
           L AL  G  +H+  IK  +D    V + L+DMY+KC  +  A  +F  +   N+V++NAM
Sbjct: 369 LQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAM 428

Query: 340 ITGYARNGDLTKVIELFEQLK 360
           I GY+R   L + ++LF +++
Sbjct: 429 IEGYSRQDKLVEALDLFREMR 449



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 129/295 (43%), Gaps = 42/295 (14%)

Query: 126 IHSKIVKYSL-ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
           IH+ IV     +  V + N L+  Y K     DA  +F  M  +++++W+S+++   ++G
Sbjct: 73  IHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHG 132

Query: 185 NLELAFGFLHRL-------PNP---------------------------------DTISY 204
               A     R        PN                                  D    
Sbjct: 133 YSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVG 192

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
             +I+  A+ G +++A +I   +    + +W +I+ GY    R   +L LF +M+  DV 
Sbjct: 193 TSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVY 252

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
            D Y  S++LS  + L  L  G  IH  V+++G D  + V + ++D Y KC +V+    +
Sbjct: 253 PDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKL 312

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           F  L  K++V+W  MI G  +N      ++LF ++   +  +PD+    +VL +C
Sbjct: 313 FNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEM-VRKGWKPDAFGCTSVLNSC 366



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 2/182 (1%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE-M 258
           D    N +++  ++     DA  +  +MP  N  +W+S+++ Y       EAL LF   M
Sbjct: 86  DVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFM 145

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           +S     +EY  ++++     L  L+  + +H  V+K G    + V ++L+D Y+K G V
Sbjct: 146 RSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYV 205

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           + A  +F  L  K  VTW A+I GYA+ G     ++LF Q++   D+ PD     +VL+A
Sbjct: 206 DEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMRE-GDVYPDRYVISSVLSA 264

Query: 379 CS 380
           CS
Sbjct: 265 CS 266



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 289 IHSCVIKQGLDA-SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
           IH+ ++  G     + + + LL  YSK      A  +F ++  +NLVTW++M++ Y ++G
Sbjct: 73  IHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHG 132

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              + + LF +       +P+     +V+ AC+ 
Sbjct: 133 YSVEALLLFCRFMRSCSEKPNEYILASVVRACTQ 166


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 159/518 (30%), Positives = 282/518 (54%), Gaps = 34/518 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y    +++A++++      Q +H  ++K+ F S++F+S +L+ FY  +  L  A+ +
Sbjct: 129 PNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLV 188

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +I +  +VSWNS+ISG+VQ G   +AL LF  ++      +  +    L+AC +   L
Sbjct: 189 FSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDL 248

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G      I +  ++  ++++N ++DMY KCGS+EDA  +F +M +KDI+SW ++I   
Sbjct: 249 EFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGY 308

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           A+ G+ + A      +P  D  ++N +I+   Q G                         
Sbjct: 309 AKVGDYDAARRVFDVMPREDITAWNALISSYQQNG------------------------- 343

Query: 241 GYVNRNRVPEALHLFGEMQ-SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
                 +  EAL +F E+Q +K+   +E T ++ L+  A L A+  G  IH  + KQG+ 
Sbjct: 344 ------KPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIK 397

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            +  + ++L+DMYSKCG +E A  +F S+ R+++  W+AMI G A +G     I+LF ++
Sbjct: 398 LNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKM 457

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           +  + ++P++VTF N+L ACSH+ +  D+   +F  M   YG+ P  +H   M+ ++G+ 
Sbjct: 458 QETK-VKPNAVTFTNLLCACSHSGL-VDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRA 515

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G +  A  +I ++       VW ALL A     ++++A ++ + +++ + ++   YV+L 
Sbjct: 516 GCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLS 575

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           N+Y   G WD  S +R  M+  GL KE GCS IEV  +
Sbjct: 576 NIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGI 613


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 164/536 (30%), Positives = 293/536 (54%), Gaps = 48/536 (8%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+   I+K G+ S + V   L+  Y K N L  A ++F E+P+   VS+N++I+GY + G
Sbjct: 170 QVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDG 229

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
              KA+NLFVE++ S +    ++F + L A   L  + LG  IHS ++K +    V ++N
Sbjct: 230 LDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSN 289

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------- 196
            L+D Y K  SV DA  +F EM ++D +S+N +I+  A +G  + AF     L       
Sbjct: 290 ALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDR 349

Query: 197 --------------------------------PNPDTISYNEVINGIAQFGDIEDAIMIL 224
                                            + + +  N +++  A+ G  E+A MI 
Sbjct: 350 KQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIF 409

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
           +++   ++  W ++++ YV +    E L LF +M+   V  D+ TF+++L   A +++L+
Sbjct: 410 TNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLS 469

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  +HS +IK G  +++   SALLD+Y+KCG ++ A   F+ +  +N+V+WNAMI+ YA
Sbjct: 470 LGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYA 529

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE---YFESMTKDYG 401
           +NG+    ++ F+++  +  LQPDSV+FL VL+ACSH+ +    V E   +F SMT+ Y 
Sbjct: 530 QNGEAEATLKSFKEM-VLSGLQPDSVSFLGVLSACSHSGL----VEEGLWHFNSMTQIYK 584

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           + P  EH  S++ ++ + G    A++++ E+      ++W ++L+A     + ++AR +A
Sbjct: 585 LDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAA 644

Query: 462 AEVIKLEGDSDYV-YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++  +E   D   YV + N+Y + G W+  S +   MR+RG++K    SW+E+++
Sbjct: 645 DQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKH 700



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 207/449 (46%), Gaps = 54/449 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P E+    +L A+  L      QQ+H +++K+ F+ NVFVS AL+ FY K +S+ DA K+
Sbjct: 248 PTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKL 307

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+   VS+N +ISGY   GK++ A +LF EL+ +      + F + L+        
Sbjct: 308 FDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDW 367

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           ++G  IH++ +  + +  +++ N L+DMY KCG  E+A  +F  +  +  + W ++I+A 
Sbjct: 368 EMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAY 427

Query: 181 ARNGNLELAFGFLHRLPNPDTI-------------------------------------- 202
            + G  E      +++     I                                      
Sbjct: 428 VQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNV 487

Query: 203 -SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
            S + +++  A+ G I+DA+     MP  N  SWN++++ Y         L  F EM   
Sbjct: 488 FSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLS 547

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ--GLDASIVVASALLDMYSKCGQVE 319
            +  D  +F  +LS  +  S L    L H   + Q   LD      ++++DM  + G+  
Sbjct: 548 GLQPDSVSFLGVLSACSH-SGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFN 606

Query: 320 IADSMFRSL-CRKNLVTWNAMITG--YARNGDLTK--VIELFEQLKTVRDLQPDSVTFLN 374
            A+ +   +    + + W++++      +N +L +    +LF  ++ +RD  P  V   N
Sbjct: 607 EAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLF-NMEELRDAAP-YVNMSN 664

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           + AA       ++ VS+  ++M +D G+K
Sbjct: 665 IYAAAGQ----WENVSKVHKAM-RDRGVK 688



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 157/333 (47%), Gaps = 33/333 (9%)

Query: 29  ILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKA 88
           I+K+GF  +   S   +G + K   L+ A ++F ++P  + VS N +ISGYV+SG   +A
Sbjct: 43  IVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEA 102

Query: 89  LNLFVEL-ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLID 147
             LF  + ER+     A ++T  +    QL   +    +  ++ +   E   V    L+ 
Sbjct: 103 RKLFDGMVERT-----AVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLS 157

Query: 148 MYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEV 207
                       G  G  +   I    + I          +  G+  RL     I  N +
Sbjct: 158 ------------GCNGHEMGNQITQVQTQI----------IKLGYDSRL-----IVGNTL 190

Query: 208 INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
           ++   +   ++ A  +   MP  +S S+N+++TGY       +A++LF EMQ+  +   E
Sbjct: 191 VDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTE 250

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
           +TF+ +L    GL  +  G  IHS VIK     ++ V++ALLD YSK   V  A  +F  
Sbjct: 251 FTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDE 310

Query: 328 LCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           +  ++ V++N +I+GYA +G      +LF +L+
Sbjct: 311 MPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQ 343



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 111/213 (52%), Gaps = 1/213 (0%)

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILS 225
            D D    N  +    +NG L  A     ++P+ +T+S N +I+G  + G++ +A  +  
Sbjct: 48  FDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFD 107

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
            M    + +W  ++ GY   N+  EA  LF +MQ      D  TF T+LSG  G      
Sbjct: 108 GMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQ 167

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
              + + +IK G D+ ++V + L+D Y K  ++++A  +F+ +   + V++NAMITGY++
Sbjct: 168 ITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSK 227

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           +G   K + LF +++    L+P   TF  VL A
Sbjct: 228 DGLDEKAVNLFVEMQN-SGLKPTEFTFAAVLCA 259



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 14/174 (8%)

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           I + ++K G D     ++  +  + K G++  A  +F  +  KN V+ N MI+GY ++G+
Sbjct: 39  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 98

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
           L +  +LF+ +     ++  +VT+  ++   S  +  F +  E F  M +  G +P  ++
Sbjct: 99  LGEARKLFDGM-----VERTAVTWTILIGGYSQLN-QFKEAFELFVQMQR-CGTEP--DY 149

Query: 409 CCSMIRLMGQKG-----EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
              +  L G  G     ++ + Q  I +LG+ S  +V   L+ +    + LD+A
Sbjct: 150 VTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLA 203


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 170/561 (30%), Positives = 300/561 (53%), Gaps = 47/561 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL-SNVFVSTALMG-FYRKINSLADAH 58
           PNEY      RA S   + +    +  +++K+G+L S+V V   L+  F +    L  A 
Sbjct: 166 PNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAF 225

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           K+F ++P+ + V+W  +I+  +Q G   +A++LF+E+  S    D ++ +  ++AC  + 
Sbjct: 226 KVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANME 285

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC---GSVEDAIGVFGEMIDKDIISWNS 175
            L LG  +HS+ +++ L     +  CLI+MY KC   GS+  A  +F +++D ++ SW +
Sbjct: 286 LLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTA 345

Query: 176 VIAASARNGN-----LELAFGFL--HRLPNPDTIS------------------------- 203
           +I    + G      L+L  G +  H +PN  T S                         
Sbjct: 346 MITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL 405

Query: 204 --------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
                    N +I+  A+ G I+DA      +   N  S+N+++  Y       EAL LF
Sbjct: 406 GFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELF 465

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
            E++ + +    +TF+++LSG A +  +  G  IH+ VIK GL  +  V +AL+ MYS+C
Sbjct: 466 NEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRC 525

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G +E A  +F  +  +N+++W ++ITG+A++G  T+ +ELF ++     ++P+ VT++ V
Sbjct: 526 GNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLE-EGVRPNLVTYIAV 584

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L+ACSH  +  ++  ++F+SM  ++G+ P +EH   M+ ++G+ G +  A + I  + + 
Sbjct: 585 LSACSHVGL-VNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYK 643

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
           +  +VWR  L A     +L++ + +A  +I+ E      Y++L NLY S   WD  S +R
Sbjct: 644 ADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIR 703

Query: 496 NFMRERGLRKEAGCSWIEVEN 516
             M+E+ L KEAGCSW+EVEN
Sbjct: 704 KAMKEKNLIKEAGCSWVEVEN 724



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 179/381 (46%), Gaps = 24/381 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +     L+A ++L      +Q+  + +K GF S   V+ +L+  Y +   + DA K 
Sbjct: 374 PNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKA 433

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + + +++S+N++I  Y ++    +AL LF E+E   + A A++F S L+    +G++
Sbjct: 434 FDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTI 493

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH++++K  L+    + N LI MY +CG++E A  VF +M D+++ISW S+I   
Sbjct: 494 GKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGF 553

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
           A++G    A    H++      P+ ++Y  V++  +  G + +      SM +     P 
Sbjct: 554 AKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPR 613

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  ++        + EA+     M  K    D   + T L        L  G     
Sbjct: 614 MEHYACMVDILGRSGSLSEAIQFINSMPYK---ADALVWRTFLGACRVHGNLELGKHAAK 670

Query: 292 CVIKQGLDASIVVASALL-DMYSKCGQVEIADSMFRSLCRKNLV-----TW----NAMIT 341
            +I+Q  +     A  LL ++Y+   + +   ++ +++  KNL+     +W    N +  
Sbjct: 671 MIIEQ--EPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHK 728

Query: 342 GYARNGDLTKVIELFEQLKTV 362
            Y  +    K  E++++L+ +
Sbjct: 729 FYVGDTSHPKAAEIYDELQNL 749



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 157/364 (43%), Gaps = 50/364 (13%)

Query: 67  PSVVSWNSLISGYVQ---SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
           P+  + N L    +Q   +G+  KA++    +     + D  +++  L  C +  S  +G
Sbjct: 26  PTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIG 85

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASAR 182
             +H K+ +  L+   V  N LI +Y KCG  E A  +F  M   +D+ISW+++++  A 
Sbjct: 86  TLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFAN 145

Query: 183 NG-NLELAFGFLHRLPN---PD------------TISYNEVINGIAQF------------ 214
           N         F+  + N   P+            T  +  V + I  F            
Sbjct: 146 NNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVC 205

Query: 215 -------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                        GD+  A  +   MP  N+ +W  ++T  +      EA+ LF EM   
Sbjct: 206 VGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILS 265

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC---GQV 318
               D +T S ++S  A +  L  G  +HS  I+ GL     V   L++MY+KC   G +
Sbjct: 266 GYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSM 325

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDL-TKVIELFEQLKTVRDLQPDSVTFLNVLA 377
             A  +F  +   N+ +W AMITGY + G    + ++LF  +  +  + P+  TF + L 
Sbjct: 326 CAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGM-ILTHVIPNHFTFSSTLK 384

Query: 378 ACSH 381
           AC++
Sbjct: 385 ACAN 388



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 107/461 (23%), Positives = 200/461 (43%), Gaps = 62/461 (13%)

Query: 43  ALMGFYRKINSLADAHKMFVEI-PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           +L+  Y K      A  +F  +     ++SW++++S +  +    +AL  FV++  +  Y
Sbjct: 106 SLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYY 165

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS-LERGVVIANCLIDMYGKC-GSVEDAI 159
            + Y F +A  AC     + +G +I   +VK   L+  V +   LIDM+ K  G +  A 
Sbjct: 166 PNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAF 225

Query: 160 GVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLPNPDTISYNEVINGIAQF- 214
            VF +M +++ ++W  +I    + G     ++L    +     PD  + + VI+  A   
Sbjct: 226 KVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANME 285

Query: 215 -------------------------------------GDIEDAIMILSSMPSPNSSSWNS 237
                                                G +  A  I   +   N  SW +
Sbjct: 286 LLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTA 345

Query: 238 ILTGYVNRNRV-PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           ++TGYV +     EAL LF  M    V  + +TFS+ L   A L+AL  G  + +  +K 
Sbjct: 346 MITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL 405

Query: 297 GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
           G  +   VA++L+ MY++ G+++ A   F  L  KNL+++N +I  YA+N +  + +ELF
Sbjct: 406 GFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELF 465

Query: 357 EQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLM 416
            +++  + +   + TF ++L+  +   I      E   +     G+K     C ++I + 
Sbjct: 466 NEIED-QGMGASAFTFASLLSGAA--SIGTIGKGEQIHARVIKSGLKLNQSVCNALISMY 522

Query: 417 GQKGEVWRAQRMIREL-------------GFGSYGVVWRAL 444
            + G +  A ++  ++             GF  +G   +AL
Sbjct: 523 SRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQAL 563



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 10/224 (4%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNS-SSWNSILTGYVNRNRVPEALHLFGEM 258
           D+++ N +I+  ++ G  E A  I   M S     SW+++++ + N N    AL  F +M
Sbjct: 100 DSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDM 159

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKC-G 316
                  +EY F+      +    ++ G  I   V+K G L + + V   L+DM+ K  G
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRG 219

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            +  A  +F  +  +N VTW  MIT   + G   + I+LF ++  +   +PD  T   V+
Sbjct: 220 DLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEM-ILSGYEPDRFTLSGVI 278

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC--CSMIRLMGQ 418
           +AC++ ++    + +   S    +G+  T++ C  C +I +  +
Sbjct: 279 SACANMELLL--LGQQLHSQAIRHGL--TLDRCVGCCLINMYAK 318


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 165/557 (29%), Positives = 292/557 (52%), Gaps = 43/557 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +++A S LG     +QLH ++LKS F +++    AL+  Y K N + DA  +
Sbjct: 162 PDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDV 221

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY-ADAYSFTSALAACGQLGS 119
           F  +    ++SW S+I+G+ Q G   +AL  F E+    +Y  + + F S  +AC  L  
Sbjct: 222 FSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQ 281

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            + G  +H   +K+ L R V     L DMY KCG +  A  VF ++   D+++WN++IA 
Sbjct: 282 PEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAG 341

Query: 180 SARNGNLELAFGFLHRLPN----PDTISY------------------------------- 204
            A  G+ + A  F  ++ +    PD I+                                
Sbjct: 342 FAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLD 401

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMP-SPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
               N ++   A+  ++ DAI     M  + +  SWN+ILT  +  ++  E   L   M 
Sbjct: 402 VPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMC 461

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
                 D  T + +L   A   ++  G  +H   +K GL+    V + L+D+Y+KCG ++
Sbjct: 462 ISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLK 521

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F S+   ++V+W+++I GYA+ G   + ++LF+ ++ + D++P+ VTF+ VL AC
Sbjct: 522 TAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRL-DVKPNHVTFVGVLTAC 580

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH  +  ++  + + +M K++GI PT EHC  M+ L+ + G +  A+  I ++ F    V
Sbjct: 581 SHVGL-VEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIV 639

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           VW+ LL+A     ++DV + +A  ++K++  +   +V+LCN+Y S GNW+  + +R+ M+
Sbjct: 640 VWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIYASKGNWEDVARLRSLMK 699

Query: 500 ERGLRKEAGCSWIEVEN 516
           +RG+RK  G SWIEV++
Sbjct: 700 QRGVRKVPGQSWIEVKD 716



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 206/416 (49%), Gaps = 42/416 (10%)

Query: 8   HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP 67
           +L+ A S L    + +++H ++LKS    ++ +   ++  Y K  SL DA K+F  +P+ 
Sbjct: 68  YLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPER 127

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
           +VVSW S+I+GY Q+G+   AL  + ++ +S +  D ++F S + AC  LG + LG  +H
Sbjct: 128 NVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLH 187

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-NL 186
           + ++K      ++  N LI MY K   + DA+ VF  M  +D+ISW S+IA  ++ G  L
Sbjct: 188 AHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYEL 247

Query: 187 ELAFGF---LHR---LPNPDTI-------------SYNEVINGI---------------- 211
           E    F   LH+   LPN                  Y   ++G+                
Sbjct: 248 EALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSL 307

Query: 212 ----AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
               A+ G +  A ++   +  P+  +WN+I+ G+       EA+  F +M+ + +  DE
Sbjct: 308 CDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDE 367

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
            T  ++L      S L  GM +H  + K GLD  + V + LL MY+KC ++  A   F  
Sbjct: 368 ITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEE 427

Query: 328 L-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           + C  +LV+WNA++T   R+    +V  L  +L  +   +PD +T  NVL A + T
Sbjct: 428 MRCNADLVSWNAILTACMRHDQAEEVFRLL-KLMCISQHRPDYITLTNVLGASAET 482



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 193/420 (45%), Gaps = 48/420 (11%)

Query: 71  SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYS-FTSALAACGQLGSLQLGMAIHSK 129
           S N  I+   +   + +A+  F  L++   +    S +   ++AC  L SL+ G  IH  
Sbjct: 29  SSNEYITSLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGKKIHDH 88

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN---- 185
           ++K      + + N +++MYGKC S++DA  VF  M +++++SW SVIA  ++NG     
Sbjct: 89  MLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNA 148

Query: 186 LELAFGFLHRLPNPDTISYNEVINGIAQFGDIE--------------------------- 218
           LE  F  L     PD  ++  +I   +  GDI                            
Sbjct: 149 LEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISM 208

Query: 219 --------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM-DEYT 269
                   DA+ + S M + +  SW S++ G+       EAL  F EM  + V + +E+ 
Sbjct: 209 YTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFI 268

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           F ++ S  + L    +G  +H   IK GL   +    +L DMY+KCG +  A  +F  + 
Sbjct: 269 FGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIG 328

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD-- 387
           R +LV WNA+I G+A  GD  + I  F Q++  + L PD +T  ++L AC+     +   
Sbjct: 329 RPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRH-QGLIPDEITVRSLLCACTSPSELYQGM 387

Query: 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
           +V  Y   M    G+   V  C +++ +  +  E+  A     E+   +  V W A+L+A
Sbjct: 388 QVHGYINKM----GLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTA 443



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 133/284 (46%), Gaps = 5/284 (1%)

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
           +PD    N ++N   +   ++DA  +  +MP  N  SW S++ GY    +   AL  + +
Sbjct: 95  HPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQ 154

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M    V  D++TF +++   + L  +  G  +H+ V+K    A I+  +AL+ MY+K   
Sbjct: 155 MLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNL 214

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +  A  +F  +  ++L++W +MI G+++ G   + +  F+++       P+   F +V +
Sbjct: 215 IIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFS 274

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           ACS    P  +       M+  +G+   V   CS+  +  + G +  A+ +  ++G    
Sbjct: 275 ACSSLLQP--EYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDL 332

Query: 438 GVVWRALLS--ASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
            V W A+++  A G  +   +A  S      L  D   V  +LC
Sbjct: 333 -VAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLC 375


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 168/473 (35%), Positives = 250/473 (52%), Gaps = 41/473 (8%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD 103
           +MG Y K N L DA  +F  +P+   VSWN++ISGY Q+G+  +A  LF E         
Sbjct: 210 MMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE--------- 260

Query: 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
                                         S  R V     ++  Y + G +++A  VF 
Sbjct: 261 ------------------------------SPVRDVFTWTAMVSGYVQNGMLDEARRVFD 290

Query: 164 EMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMI 223
            M +K+ +SWN++IA   +   ++ A      +P  +  S+N +I G AQ GDI  A   
Sbjct: 291 GMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNF 350

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              MP  +S SW +I+ GY       EALHLF EM+     ++  TF++ LS  A ++AL
Sbjct: 351 FDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAAL 410

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H  V+K GL++   V +ALL MY KCG ++ A  +F  +  K +V+WN MI GY
Sbjct: 411 ELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGY 470

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           AR+G   + + LFE +K    + PD VT + VL+ACSHT +  DK +EYF SMT+DYGI 
Sbjct: 471 ARHGFGKEALMLFESMKKT-GILPDDVTMVGVLSACSHTGL-VDKGTEYFYSMTQDYGIT 528

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
              +H   MI L+G+ G +  AQ +++ + F      W ALL AS    + ++   +A  
Sbjct: 529 ANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKM 588

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           + ++E D+  +YV+L NLY + G W     MR  MR+RG++K  G SW+EV+N
Sbjct: 589 IFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQN 641



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 175/327 (53%), Gaps = 23/327 (7%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A ++F  +P+ S +SWN++ISG + + K+  A  LF ++       D  S+   ++ C +
Sbjct: 68  ALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTR----DLVSWNVMISGCVR 123

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
             +L+    +  ++     ER VV  N ++  Y + G V++A  +F EM  K+ ISWN +
Sbjct: 124 YRNLRAARLLFDQMP----ERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGM 179

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
           +AA  +NG +E A        + + IS+N ++ G  +   + DA  I   MP  +  SWN
Sbjct: 180 LAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWN 239

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           ++++GY     + EA  LF E   +DV    +T++ M+SG      +  GML  +  +  
Sbjct: 240 TMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGY-----VQNGMLDEARRVFD 290

Query: 297 GL-DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
           G+ + + V  +A++  Y +C +++ A  +F ++  +N+ +WN MITGYA+NGD+ +    
Sbjct: 291 GMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNF 350

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACSHT 382
           F+++      Q DS+++  ++A  + +
Sbjct: 351 FDRMP-----QRDSISWAAIIAGYAQS 372



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 164/333 (49%), Gaps = 50/333 (15%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           +  +L  A  +F ++P+  VVSWN+++SGY Q+G  ++A  +F E+       ++ S+  
Sbjct: 123 RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP----CKNSISWNG 178

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
            LAA  Q G ++    +      + L    +  NC++  Y K   + DA G+F  M ++D
Sbjct: 179 MLAAYVQNGRIEDARRLFESKADWEL----ISWNCMMGGYVKRNRLVDARGIFDRMPERD 234

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
            +SWN++I+  A+NG L  A       P  D  ++  +++G  Q G +++A  +   MP 
Sbjct: 235 EVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPE 294

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            NS SWN+I+ GYV   R+ +A  LF  M  ++V     +++TM++G             
Sbjct: 295 KNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVS----SWNTMITG------------- 337

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
                                 Y++ G +  A + F  + +++ ++W A+I GYA++G  
Sbjct: 338 ----------------------YAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYG 375

Query: 350 TKVIELFEQLKTVRDLQP-DSVTFLNVLAACSH 381
            + + LF ++K  RD +  +  TF + L+ C+ 
Sbjct: 376 EEALHLFVEMK--RDGERLNRSTFTSTLSTCAE 406



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 139/285 (48%), Gaps = 27/285 (9%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL 95
            NV     ++  Y +   +A A   F  +PQ   +SW ++I+GY QSG   +AL+LFVE+
Sbjct: 326 QNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 385

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
           +R     +  +FTS L+ C ++ +L+LG  +H ++VK  LE G  + N L+ MY KCG++
Sbjct: 386 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNI 445

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGI 211
           +DA  VF  + +K+++SWN++IA  AR+G  + A      +      PD ++   V++  
Sbjct: 446 DDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSAC 505

Query: 212 AQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
           +  G ++       SM      + NS  +  ++       R+ +A +L      K++P +
Sbjct: 506 SHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLM-----KNMPFE 560

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
                          A TWG L+ +  I    +     A  + +M
Sbjct: 561 P-------------DAATWGALLGASRIHGNTELGEKAAKMIFEM 592



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 115/229 (50%), Gaps = 13/229 (5%)

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN 198
           +V  N  I  + + G  + A+ +F  M  +  ISWN++I+    N    LA     ++P 
Sbjct: 49  IVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPT 108

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
            D +S+N +I+G  ++ ++  A ++   MP  +  SWN++L+GY     V EA  +F EM
Sbjct: 109 RDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM 168

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC--VIKQGLDASIVVASALLDMYSKCG 316
             K+        S   +G+  L+A      I     + +   D  ++  + ++  Y K  
Sbjct: 169 PCKN--------SISWNGM--LAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRN 218

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           ++  A  +F  +  ++ V+WN MI+GYA+NG+L +   LFE+   VRD+
Sbjct: 219 RLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE-SPVRDV 266



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 2/169 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  ++K+G  S  +V  AL+  Y K  ++ DA+ +F  I +  VVSWN++I+GY + 
Sbjct: 414 KQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARH 473

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA-IHSKIVKYSLERGVVI 141
           G  ++AL LF  ++++ I  D  +    L+AC   G +  G    +S    Y +      
Sbjct: 474 GFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKH 533

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLELA 189
             C+ID+ G+ G ++DA  +   M  + D  +W +++ AS  +GN EL 
Sbjct: 534 YTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELG 582



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 160/348 (45%), Gaps = 27/348 (7%)

Query: 35  LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE 94
           + +VF  TA++  Y +   L +A ++F  +P+ + VSWN++I+GYVQ  +  +A  LF  
Sbjct: 263 VRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEA 322

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           +    +     S+ + +    Q G +        ++     +R  +    +I  Y + G 
Sbjct: 323 MPCQNV----SSWNTMITGYAQNGDIAQARNFFDRMP----QRDSISWAAIIAGYAQSGY 374

Query: 155 VEDAIGVF------GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVI 208
            E+A+ +F      GE +++   ++ S ++  A    LEL      R+      S   V 
Sbjct: 375 GEEALHLFVEMKRDGERLNRS--TFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVG 432

Query: 209 NGI----AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
           N +     + G+I+DA ++   +      SWN+++ GY       EAL LF  M+   + 
Sbjct: 433 NALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGIL 492

Query: 265 MDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
            D+ T   +LS  +    +  G    +S     G+ A+    + ++D+  + G+++ A +
Sbjct: 493 PDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQN 552

Query: 324 MFRSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQ-LKTVRDLQPDS 369
           + +++    +  TW A++     +G+     EL E+  K + +++PD+
Sbjct: 553 LMKNMPFEPDAATWGALLGASRIHGN----TELGEKAAKMIFEMEPDN 596


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 169/473 (35%), Positives = 250/473 (52%), Gaps = 41/473 (8%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD 103
           +MG Y K N L DA  +F  +P+   VSWN++ISGY Q+G+  +A  LF E         
Sbjct: 129 MMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE--------- 179

Query: 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
                                         S  R V     ++  Y + G +++A  VF 
Sbjct: 180 ------------------------------SPVRDVFTWTAMVSGYVQNGMLDEARRVFD 209

Query: 164 EMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMI 223
            M +K+ +SWN++IA   +   ++ A      +P  +  S+N +I G AQ GDI  A   
Sbjct: 210 GMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNF 269

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              MP  +S SW +I+ GY       EALHLF EM+     ++  TF++ LS  A ++AL
Sbjct: 270 FDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAAL 329

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H  V+K GL++   V +ALL MY KCG ++ A  +F  +  K +V+WN MI GY
Sbjct: 330 ELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGY 389

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           AR+G   + + LFE +K    L PD VT + VL+ACSHT +  DK +EYF SMT+DYGI 
Sbjct: 390 ARHGFGKEALMLFESMKKTGIL-PDDVTMVGVLSACSHTGL-VDKGTEYFYSMTQDYGIT 447

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
              +H   MI L+G+ G +  AQ +++ + F      W ALL AS    + ++   +A  
Sbjct: 448 ANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKM 507

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           + ++E D+  +YV+L NLY + G W     MR  MR+RG++K  G SW+EV+N
Sbjct: 508 IFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQN 560



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 164/332 (49%), Gaps = 50/332 (15%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           +  +L  A  +F ++P+  VVSWN+++SGY Q+G  ++A  +F E+       ++ S+  
Sbjct: 42  RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP----CKNSISWNG 97

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
            LAA  Q G ++    +      + L    +  NC++  Y K   + DA G+F  M ++D
Sbjct: 98  MLAAYVQNGRIEDARRLFESKADWEL----ISWNCMMGGYVKRNRLVDARGIFDRMPERD 153

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
            +SWN++I+  A+NG L  A       P  D  ++  +++G  Q G +++A  +   MP 
Sbjct: 154 EVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPE 213

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            NS SWN+I+ GYV   R+ +A  LF  M  ++V     +++TM++G             
Sbjct: 214 KNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVS----SWNTMITG------------- 256

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
                                 Y++ G +  A + F  + +++ ++W A+I GYA++G  
Sbjct: 257 ----------------------YAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYG 294

Query: 350 TKVIELFEQLKTVRDLQP-DSVTFLNVLAACS 380
            + + LF ++K  RD +  +  TF + L+ C+
Sbjct: 295 EEALHLFVEMK--RDGERLNRSTFTSTLSTCA 324



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 139/285 (48%), Gaps = 27/285 (9%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL 95
            NV     ++  Y +   +A A   F  +PQ   +SW ++I+GY QSG   +AL+LFVE+
Sbjct: 245 QNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 304

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
           +R     +  +FTS L+ C ++ +L+LG  +H ++VK  LE G  + N L+ MY KCG++
Sbjct: 305 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNI 364

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGI 211
           +DA  VF  + +K+++SWN++IA  AR+G  + A      +      PD ++   V++  
Sbjct: 365 DDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSAC 424

Query: 212 AQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
           +  G ++       SM      + NS  +  ++       R+ +A +L      K++P +
Sbjct: 425 SHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLM-----KNMPFE 479

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
                          A TWG L+ +  I    +     A  + +M
Sbjct: 480 P-------------DAATWGALLGASRIHGNTELGEKAAKMIFEM 511



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 136/248 (54%), Gaps = 15/248 (6%)

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
           ER VV  N ++  Y + G V++A  +F EM  K+ ISWN ++AA  +NG +E A      
Sbjct: 58  ERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFES 117

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
             + + IS+N ++ G  +   + DA  I   MP  +  SWN++++GY     + EA  LF
Sbjct: 118 KADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLF 177

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL-DASIVVASALLDMYSK 314
            E   +DV    +T++ M+SG      +  GML  +  +  G+ + + V  +A++  Y +
Sbjct: 178 EESPVRDV----FTWTAMVSGY-----VQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQ 228

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           C +++ A  +F ++  +N+ +WN MITGYA+NGD+ +    F+++      Q DS+++  
Sbjct: 229 CKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMP-----QRDSISWAA 283

Query: 375 VLAACSHT 382
           ++A  + +
Sbjct: 284 IIAGYAQS 291



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 2/169 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  ++K+G  S  +V  AL+  Y K  ++ DA+ +F  I +  VVSWN++I+GY + 
Sbjct: 333 KQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARH 392

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA-IHSKIVKYSLERGVVI 141
           G  ++AL LF  ++++ I  D  +    L+AC   G +  G    +S    Y +      
Sbjct: 393 GFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKH 452

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLELA 189
             C+ID+ G+ G ++DA  +   M  + D  +W +++ AS  +GN EL 
Sbjct: 453 YTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELG 501



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 160/348 (45%), Gaps = 27/348 (7%)

Query: 35  LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE 94
           + +VF  TA++  Y +   L +A ++F  +P+ + VSWN++I+GYVQ  +  +A  LF  
Sbjct: 182 VRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEA 241

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           +    +     S+ + +    Q G +        ++     +R  +    +I  Y + G 
Sbjct: 242 MPCQNV----SSWNTMITGYAQNGDIAQARNFFDRMP----QRDSISWAAIIAGYAQSGY 293

Query: 155 VEDAIGVF------GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVI 208
            E+A+ +F      GE +++   ++ S ++  A    LEL      R+      S   V 
Sbjct: 294 GEEALHLFVEMKRDGERLNRS--TFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVG 351

Query: 209 NGI----AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
           N +     + G+I+DA ++   +      SWN+++ GY       EAL LF  M+   + 
Sbjct: 352 NALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGIL 411

Query: 265 MDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
            D+ T   +LS  +    +  G    +S     G+ A+    + ++D+  + G+++ A +
Sbjct: 412 PDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQN 471

Query: 324 MFRSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQ-LKTVRDLQPDS 369
           + +++    +  TW A++     +G+     EL E+  K + +++PD+
Sbjct: 472 LMKNMPFEPDAATWGALLGASRIHGN----TELGEKAAKMIFEMEPDN 515



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 14/175 (8%)

Query: 193 LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEAL 252
           LH  P  D +  ++ + G  ++ ++  A ++   MP  +  SWN++L+GY     V EA 
Sbjct: 23  LHASPEFDFLERHD-LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAK 81

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC--VIKQGLDASIVVASALLD 310
            +F EM  K+        S   +G+  L+A      I     + +   D  ++  + ++ 
Sbjct: 82  EIFDEMPCKN--------SISWNGM--LAAYVQNGRIEDARRLFESKADWELISWNCMMG 131

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
            Y K  ++  A  +F  +  ++ V+WN MI+GYA+NG+L +   LFE+   VRD+
Sbjct: 132 GYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE-SPVRDV 185


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 166/554 (29%), Positives = 280/554 (50%), Gaps = 73/554 (13%)

Query: 1   PNEYVLFHLLRASSDLG--WDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLA--- 55
           P++Y    L+ A   +      +C QLHC +LKSG  + + VS AL+  Y K ++     
Sbjct: 159 PDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASW 218

Query: 56  DAHKMFVEIPQPSVVSW-------------------------------NSLISGYVQSGK 84
           DA K+  E+P    ++W                               N++ISGYVQSG 
Sbjct: 219 DARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGM 278

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK----YSLERGVV 140
              A  LF  +   ++  D ++FTS L+AC   G    G ++H +I++    +  E  + 
Sbjct: 279 CADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALP 338

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           + N L+ +Y K G +  A  +F  M  KD++SWN+                         
Sbjct: 339 VNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNT------------------------- 373

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                 +++G    G ++ A+ +   MP  N  SW  +++GYV+     +AL LF +M++
Sbjct: 374 ------ILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRA 427

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +DV   +YT++  ++    L AL  G  +H+ +++ G +AS    +ALL MY+KCG V  
Sbjct: 428 EDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVND 487

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  +   + V+WNAMI+   ++G   + +ELF+Q+     + PD ++FL +L AC+
Sbjct: 488 ARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQM-VAEGIDPDRISFLTILTACN 546

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H  +  D+   YFESM +D+GI P  +H   +I L+G+ G +  A+ +I+ + F     +
Sbjct: 547 HAGL-VDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSI 605

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W A+LS      D++    +A ++ ++    D  Y++L N Y++ G W  A+ +R  MR+
Sbjct: 606 WEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRD 665

Query: 501 RGLRKEAGCSWIEV 514
           RG++KE GCSWIEV
Sbjct: 666 RGVKKEPGCSWIEV 679



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 205/434 (47%), Gaps = 53/434 (12%)

Query: 41  STALMGFYRKINSLADAHKMFVEIP--QPSVVSWNSLISGYVQSGKYRKALNLFVELERS 98
           +T+L+        L DA   F  +P  +   V  N+++S + ++     A+++F  L  S
Sbjct: 95  ATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGS 154

Query: 99  -EIYADAYSFTSALAACGQLGSLQLG--MAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
             +  D YSFT+ ++A GQ+ +L       +H  ++K      + ++N LI +Y KC + 
Sbjct: 155 GSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTP 214

Query: 156 E---DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIA 212
           E   DA  V  EM DKD ++W +++             G++ R                 
Sbjct: 215 EASWDARKVLDEMPDKDDLTWTTMVV------------GYVRR----------------- 245

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
             GD+  A  +   +       WN++++GYV      +A  LF  M S+ VP+DE+TF++
Sbjct: 246 --GDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTS 303

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQG----LDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           +LS  A       G  +H  +I+       +A++ V +AL+ +YSK G++ IA  +F ++
Sbjct: 304 VLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTM 363

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDK 388
             K++V+WN +++GY  +G L K +E+F+ +    DL     +++ +++   H  +  D 
Sbjct: 364 NLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDL-----SWMVMVSGYVHGGLSEDA 418

Query: 389 VSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL---GFGSYGVVWRALL 445
           +  + +   +D  +KP        I   G+ G +   +++   L   GF +      ALL
Sbjct: 419 LKLFNQMRAED--VKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALL 476

Query: 446 SASGACSDLDVARI 459
           +    C  ++ AR+
Sbjct: 477 TMYAKCGAVNDARL 490


>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
          Length = 1021

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 170/546 (31%), Positives = 289/546 (52%), Gaps = 49/546 (8%)

Query: 13  SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSW 72
           S DLG     +Q+HC  +K+G  +++FV+ A++  Y K+ ++  A  +F  IP    VSW
Sbjct: 440 SLDLG-----RQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSW 494

Query: 73  NSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132
           N+LI G   + +  +A+N+   ++   I  D  SF +A+ AC  + +++ G  IHS  +K
Sbjct: 495 NALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIK 554

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF 192
           Y++     + + LID+Y K G VE +  V   +    I+  N++I    +N   + A   
Sbjct: 555 YNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVPINALITGLVQNNREDEAIEL 614

Query: 193 LHRLPN----PDTISYNEVINGIAQ-----FGD--------------------------- 216
             ++      P   ++  +++G  +      G                            
Sbjct: 615 FQQVLKDGFKPSNFTFTSILSGCTRPVSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYL 674

Query: 217 ----IEDAIMILSSMPS-PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271
               +EDA  +L  +P   N   W + ++GY       ++L +F  M+S DV  DE TF+
Sbjct: 675 KCKLLEDANKLLEEVPDHKNLVEWTATISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFT 734

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL-CR 330
           ++L   + ++ALT G  IH  ++K G  +     SAL+DMYSKCG V  +  +F+ L  R
Sbjct: 735 SVLKACSEMAALTDGKEIHGLIVKSGFVSYETATSALMDMYSKCGDVISSFEIFKELKNR 794

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
           +N++ WN+MI G+A+NG   + + LF++++  + ++PD VT L VL ACSH  +  + + 
Sbjct: 795 QNIMPWNSMIVGFAKNGYANEALLLFQKMQESQ-IKPDDVTLLGVLIACSHAGLISEGL- 852

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450
            +F+SM++ YGI P V+H   +I L+G+ G + +AQ +I +L F + GV+W   L+A   
Sbjct: 853 HFFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQKAQEVIDQLPFRADGVIWATYLAACQM 912

Query: 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCS 510
             D +  +++A +++++E  S   YV L +L+ + GNW  A V R  MRE+G+ K  GCS
Sbjct: 913 HKDEERGKVAAKKLVEMEPQSSSTYVFLSSLHAAAGNWVEAKVAREAMREKGVMKFPGCS 972

Query: 511 WIEVEN 516
           WI V N
Sbjct: 973 WITVGN 978



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 223/441 (50%), Gaps = 23/441 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++ +  +L A S LG   + +Q+HC +LKSGF S+VF    L+  Y K   + DA +M
Sbjct: 155 PDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDARRM 214

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD---AYSFTSALAACGQL 117
           F  I  P  + W S+I+GY + G+Y++AL LF  +E+     D     +  S LA+ G+L
Sbjct: 215 FDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLASMGRL 274

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII----SW 173
           G  +        ++K       V  N +I  Y + G   +  G++ +M  + ++    ++
Sbjct: 275 GDAR-------TLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTF 327

Query: 174 NSVIAASAR-----NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP 228
            S+++A+A       G    A    H L + +    + +IN   + G I DA  +     
Sbjct: 328 ASILSAAANMTAFDEGRQIHATAVKHGL-DANVFVGSSLINLYVKHGCISDAKKVFDFST 386

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             N   WN+IL G+V      E + +F  M+  D+  D++TF ++L     L +L  G  
Sbjct: 387 EKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGRQ 446

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           +H   IK G+DA + VA+A+LDMYSK G +++A ++F  +  K+ V+WNA+I G A N +
Sbjct: 447 VHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHNEE 506

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
             + I + +++K    +  D V+F   + ACS  +I   +  +   S +  Y +      
Sbjct: 507 EGEAINMLKRMK-FYGIALDEVSFATAINACS--NIWAIETGKQIHSASIKYNVCSNHAV 563

Query: 409 CCSMIRLMGQKGEVWRAQRMI 429
             S+I L  + G+V  +++++
Sbjct: 564 GSSLIDLYSKFGDVESSRKVL 584



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 99/189 (52%), Gaps = 3/189 (1%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +E     +L+A S++   T  +++H  I+KSGF+S    ++ALM  Y K   +  + ++F
Sbjct: 729 DEATFTSVLKACSEMAALTDGKEIHGLIVKSGFVSYETATSALMDMYSKCGDVISSFEIF 788

Query: 62  VEIP-QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            E+  + +++ WNS+I G+ ++G   +AL LF +++ S+I  D  +    L AC   G +
Sbjct: 789 KELKNRQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQIKPDDVTLLGVLIACSHAGLI 848

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G+     + + Y +   V    CLID+ G+ G ++ A  V  ++    D + W + +A
Sbjct: 849 SEGLHFFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQKAQEVIDQLPFRADGVIWATYLA 908

Query: 179 ASARNGNLE 187
           A   + + E
Sbjct: 909 ACQMHKDEE 917



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 138/367 (37%), Gaps = 119/367 (32%)

Query: 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSV------------------------------ 155
           +H++I++  L     + + L+D+YG+ G V                              
Sbjct: 75  LHARILRLGLPLRGRLGDALVDLYGRSGRVGYAWRALACCTGAPASSAAASSVLSCHARS 134

Query: 156 ---EDAIGVFGEM-----IDKDIISWNSVIAASARNGNLE---------LAFGFLHRLPN 198
               D +  F  +        D      V++A +R G LE         L  GF      
Sbjct: 135 GSPRDVLDAFQRIRCSIGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFC----- 189

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
                   +++  A+ G+++DA  +   +  P++  W S++ GY    R  +AL LF  M
Sbjct: 190 SSVFCQAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRM 249

Query: 259 QSKDVPMDEYTFSTMLSGIAGL----------------SALTWGMLIHSC---------- 292
           +      D+ T  T++S +A +                S + W  +I S           
Sbjct: 250 EKMGSVPDQVTCVTIISTLASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDSEVF 309

Query: 293 -----VIKQGL-----------------------------------DASIVVASALLDMY 312
                + KQGL                                   DA++ V S+L+++Y
Sbjct: 310 GLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLY 369

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
            K G +  A  +F     KN+V WNA++ G+ +N    + I++F+ ++   DL+ D  TF
Sbjct: 370 VKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRA-DLEADDFTF 428

Query: 373 LNVLAAC 379
           ++VL AC
Sbjct: 429 VSVLGAC 435


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 166/554 (29%), Positives = 280/554 (50%), Gaps = 73/554 (13%)

Query: 1   PNEYVLFHLLRASSDLG--WDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLA--- 55
           P++Y    L+ A   +      +C QLHC +LKSG  + + VS AL+  Y K ++     
Sbjct: 161 PDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASW 220

Query: 56  DAHKMFVEIPQPSVVSW-------------------------------NSLISGYVQSGK 84
           DA K+  E+P    ++W                               N++ISGYVQSG 
Sbjct: 221 DARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGM 280

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK----YSLERGVV 140
              A  LF  +   ++  D ++FTS L+AC   G    G ++H +I++    +  E  + 
Sbjct: 281 CADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALP 340

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           + N L+ +Y K G +  A  +F  M  KD++SWN++                        
Sbjct: 341 VNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTI------------------------ 376

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                  ++G    G ++ A+ +   MP  N  SW  +++GYV+     +AL LF +M++
Sbjct: 377 -------LSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRA 429

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +DV   +YT++  ++    L AL  G  +H+ +++ G +AS    +ALL MY+KCG V  
Sbjct: 430 EDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVND 489

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  +   + V+WNAMI+   ++G   + +ELF+Q+     + PD ++FL +L AC+
Sbjct: 490 ARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQM-VAEGIDPDRISFLTILTACN 548

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H  +  D+   YFESM +D+GI P  +H   +I L+G+ G +  A+ +I+ + F     +
Sbjct: 549 HAGL-VDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSI 607

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W A+LS      D++    +A ++ ++    D  Y++L N Y++ G W  A+ +R  MR+
Sbjct: 608 WEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRD 667

Query: 501 RGLRKEAGCSWIEV 514
           RG++KE GCSWIEV
Sbjct: 668 RGVKKEPGCSWIEV 681



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 116/469 (24%), Positives = 215/469 (45%), Gaps = 60/469 (12%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65
           L HL   S DL            + +S        +T+L+  +     L DA   F  +P
Sbjct: 69  LIHLYTLSPDLATPAA-------LFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVP 121

Query: 66  --QPSVVSWNSLISGYVQSGKYRKALNLFVELERS-EIYADAYSFTSALAACGQLGSLQL 122
             +   V  N+++S + ++     A+++F  L  S  +  D YSFT+ ++A GQ+ +L  
Sbjct: 122 PARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAA 181

Query: 123 G--MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE---DAIGVFGEMIDKDIISWNSVI 177
                +H  ++K      + ++N LI +Y KC + E   DA  V  EM DKD ++W +++
Sbjct: 182 PHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMV 241

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
                        G++ R                   GD+  A  +   +       WN+
Sbjct: 242 V------------GYVRR-------------------GDVNAARSVFEEVDGKFDVVWNA 270

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           +++GYV      +A  LF  M S+ VP+DE+TF+++LS  A       G  +H  +I+  
Sbjct: 271 MISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQ 330

Query: 298 ----LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
                +A++ V +AL+ +YSK G++ IA  +F ++  K++V+WN +++GY  +G L K +
Sbjct: 331 PNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAV 390

Query: 354 ELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMI 413
           E+F+ +    DL     +++ +++   H  +  D +  + +   +D  +KP        I
Sbjct: 391 EVFKVMPYKNDL-----SWMVMVSGYVHGGLSEDALKLFNQMRAED--VKPCDYTYAGAI 443

Query: 414 RLMGQKGEVWRAQRMIREL---GFGSYGVVWRALLSASGACSDLDVARI 459
              G+ G +   +++   L   GF +      ALL+    C  ++ AR+
Sbjct: 444 AACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARL 492


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 163/525 (31%), Positives = 274/525 (52%), Gaps = 38/525 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYR--KINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +QLH + LK+   ++ FVS+ L+  Y   KIN L  A  +F  I + S++ WN++I  YV
Sbjct: 30  EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYV 89

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           ++      + LF EL   E   D ++    +  C +LG +Q G  IH   +K      V 
Sbjct: 90  ENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVF 148

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           +   L++MY KCG ++ A  VF  MIDKD++ WNS+I   AR G +++A      +P  D
Sbjct: 149 VQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERD 208

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
             S+  +++G+++ G +E A  +   MP  N  SWN+++ GY+       AL LF +M  
Sbjct: 209 AFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPI 268

Query: 261 KDVP---------------MD----------------EYTFSTMLSGIAGLSALTWGMLI 289
            D+                MD                  T  ++LS ++GL+ L  G  I
Sbjct: 269 WDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWI 328

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           HS + K G +   ++ ++L++MY+KCG +E A ++FR++ +K +  W A+I G   +G  
Sbjct: 329 HSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMA 388

Query: 350 TKVIELF-EQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
              + LF E  KT   L+P+++ F+ VL AC+H  +  D   +YF+ M  +Y I+PT+EH
Sbjct: 389 NHALALFLEMCKT--GLKPNAIIFIGVLNACNHAGL-VDDGRQYFDMMMNEYKIEPTLEH 445

Query: 409 CCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE 468
              ++ ++ + G +  A+  I  +      V+W +LL  S     +D+   +A  VI++ 
Sbjct: 446 YGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVA 505

Query: 469 GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
            ++   Y++L N+Y + G W+  S +R  M +RG RK+ GCS +E
Sbjct: 506 PETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVE 550


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 156/495 (31%), Positives = 269/495 (54%), Gaps = 36/495 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGF--YRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           Q++H ++LK+G   +    + ++ F        +  A+ +F +I  P++ SWN++I G+ 
Sbjct: 41  QKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTIIRGFS 100

Query: 81  QSGKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
           QS     A++LF++ L  S +     ++ S   A  QLG    G  +H +++K  L+   
Sbjct: 101 QSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGLQFDP 160

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            I N +I MY  CG + +    F E +D DI++WNS+I                      
Sbjct: 161 FIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIM--------------------- 199

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                     G+A+ G+++++  +   MP  N+ SWNS+++GYV   R+ EAL LFG+MQ
Sbjct: 200 ----------GLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQ 249

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            + +   E+T  ++L+  A L AL  G  IH  + K   + +++V ++++DMY KCG + 
Sbjct: 250 EERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIG 309

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F     K L +WN MI G A NG   + I+LF +L+   +L+PD VTF+ VL AC
Sbjct: 310 EAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLE-CSNLRPDDVTFVGVLTAC 368

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +++ +  DK  EYF  M+K Y I+P+++H   M+  +G+ G +  A+ +IR +      +
Sbjct: 369 NYSGL-VDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAI 427

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W +LLSA     ++++A+ +A  ++ L+G+    YV+L N+Y +   ++ A   R  M+
Sbjct: 428 IWSSLLSACRKHGNVELAKRAAKHIVDLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMK 487

Query: 500 ERGLRKEAGCSWIEV 514
           E+ + KE GCS IEV
Sbjct: 488 EKQIEKEPGCSLIEV 502



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 125/262 (47%), Gaps = 35/262 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSG-----FLSNV---------FVSTALMG 46
           P+      + +A + LG   Y  QLH  ++K G     F+ N          F+S     
Sbjct: 123 PHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKA 182

Query: 47  FYRKIN-----------------SLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKAL 89
           FY +++                  + ++ K+F E+P  + VSWNS+ISGYV++G+ R+AL
Sbjct: 183 FYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREAL 242

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
           +LF +++   I    ++  S L A  +LG+L+ G  IH  I K + E  V++   +IDMY
Sbjct: 243 DLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMY 302

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYN 205
            KCGS+ +A  VF     K + SWN++I   A NG    A     RL      PD +++ 
Sbjct: 303 CKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFV 362

Query: 206 EVINGIAQFGDIEDAIMILSSM 227
            V+      G ++ A    S M
Sbjct: 363 GVLTACNYSGLVDKAKEYFSLM 384


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 179/559 (32%), Positives = 288/559 (51%), Gaps = 51/559 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +L A + L +     QLH  I+K+ F SN+FV  AL+  Y K  +L DA + 
Sbjct: 426 PDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQ 485

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I     VSWN +I GYVQ     +A +LF  +    I  D  S  S L+AC  +  L
Sbjct: 486 FELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGL 545

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H   VK   E  +   + LIDMY KCG+++ A  +   M ++ ++S N++IA  
Sbjct: 546 EQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGY 605

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVIN--------------------------- 209
           A+  NLE A      +     N   I++  +++                           
Sbjct: 606 AQI-NLEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDD 664

Query: 210 ---GIAQFG------DIEDAIMILSSMPSPNSSS-WNSILTGYVNRNRVPEALHLFGEMQ 259
              G++  G         DA ++ S   +P S+  W ++++G    +    AL L+ EM+
Sbjct: 665 EFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYKEMR 724

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           S +V  D+ TF + L   A +S++  G   HS +   G D+  + +SAL+DMY+KCG V+
Sbjct: 725 SCNVLPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCGDVK 784

Query: 320 IADSMFRSLCRK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            +  +F+ + RK ++++WN+MI G+A+NG     + +F+++K    + PD VTFL VL A
Sbjct: 785 SSMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSH-VTPDDVTFLGVLTA 843

Query: 379 CSHTDIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           CSH+     +VSE    F+ M   YG++P  +HC  M+ L+G+ G +  A+  I +L F 
Sbjct: 844 CSHSG----RVSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFE 899

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
               VW  +L A     D    + +A ++I+LE  +   YV+L N+Y + GNWD  + +R
Sbjct: 900 PDAKVWATMLGACRIHGDDIRGQQAAEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLR 959

Query: 496 NFMRERGLRKEAGCSWIEV 514
             MRE+G++K  GCSWI V
Sbjct: 960 REMREKGVKKLPGCSWIVV 978



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 193/360 (53%), Gaps = 5/360 (1%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H   LK GF S   +   ++  Y K   +  A + F ++    +++WNS++S + + G 
Sbjct: 81  IHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGF 140

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
               +  F  L  S ++ + ++F   L++C +L  ++ G  +H  +VK   E        
Sbjct: 141 PHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGA 200

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PD 200
           LI MY KC  + DA  +F   ++ D +SW S+I    + G  E A      +      PD
Sbjct: 201 LIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPD 260

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +++  VIN     G +++A  + S MP+ N  +WN +++G+       EA+  F  M+ 
Sbjct: 261 QVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRK 320

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             +     T  ++LS IA L+AL +G+L+H+  +KQGL +++ V S+L+ MY+KCG++E 
Sbjct: 321 AGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEA 380

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F +L  +N+V WNAM+ GY +NG   +V+ELF  +K+     PD  T+ ++L+AC+
Sbjct: 381 AKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSC-GFYPDDFTYSSILSACA 439



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 144/548 (26%), Positives = 244/548 (44%), Gaps = 72/548 (13%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H   LK G  SNV+V ++L+  Y K   +  A K+F  + + +VV WN+++ GYVQ+G 
Sbjct: 349 VHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGY 408

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
             + + LF  ++    Y D ++++S L+AC  L  L LG  +HS I+K      + + N 
Sbjct: 409 ANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNA 468

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPD 200
           L+DMY K G++EDA   F  + ++D +SWN +I    +  +   AF    R+      PD
Sbjct: 469 LVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPD 528

Query: 201 TISY-----------------------------------NEVINGIAQFGDIEDAIMILS 225
            +S                                    + +I+  A+ G I+ A  IL+
Sbjct: 529 EVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILA 588

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
            MP  +  S N+++ GY   N + +A++LF +M  + +   E TF+++L        L  
Sbjct: 589 CMPERSVVSMNALIAGYAQIN-LEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNL 647

Query: 286 GMLIHSCVIKQGLDASI-VVASALLDMYSKCGQVEIADSMFRSLCR-KNLVTWNAMITGY 343
           G  IHS ++K GL      +  +LL MY    +   A  +F      K+ V W AMI+G 
Sbjct: 648 GRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGL 707

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS----------------HTDIPFD 387
           ++N      ++L++++++   L PD  TF++ L AC+                HT    D
Sbjct: 708 SQNDCSVVALQLYKEMRSCNVL-PDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSD 766

Query: 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRAL--- 444
           +++    ++   Y     V+    + + M +K +V     MI  +GF   G    AL   
Sbjct: 767 ELTS--SALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMI--VGFAKNGYAEDALRVF 822

Query: 445 --LSASGACSDLDVARISAAEVIKLEG---DSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
             +  S    D DV  +         G   +   ++ M+ NLY      D  + M + + 
Sbjct: 823 DEMKQSHVTPD-DVTFLGVLTACSHSGRVSEGRLIFDMMVNLYGMQPRADHCACMVDLLG 881

Query: 500 ERGLRKEA 507
             G  KEA
Sbjct: 882 RWGSLKEA 889



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 192/388 (49%), Gaps = 13/388 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+    +L + + L      +Q+HC ++K GF S  +   AL+G Y K N L DA  +
Sbjct: 158 PNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSI 217

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +   VSW S+I GY++ G   +A+ +F E+E+     D  +F + + A   LG L
Sbjct: 218 FDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRL 277

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA- 179
                + S++      R VV  N +I  + K G   +AI  F  M    I S  S + + 
Sbjct: 278 DNASDLFSRMPN----RNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSV 333

Query: 180 -SARNGNLELAFGFL-HRLPNPDTISYN-----EVINGIAQFGDIEDAIMILSSMPSPNS 232
            SA      L FG L H       +  N      +++  A+ G +E A  +  ++   N 
Sbjct: 334 LSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNV 393

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
             WN++L GYV      E + LF  M+S     D++T+S++LS  A L  L  G  +HS 
Sbjct: 394 VLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSV 453

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           +IK    +++ V +AL+DMY+K G +E A   F  +  ++ V+WN +I GY +  D  + 
Sbjct: 454 IIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEA 513

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACS 380
             LF ++  +  L PD V+  ++L+AC+
Sbjct: 514 FHLFRRMNLLGIL-PDEVSLASILSACA 540



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 59/101 (58%), Gaps = 1/101 (0%)

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
           T   +IH+  +K G  +  V+ + ++D+Y+KC  V+ A+  F+ L  K+++ WN++++ +
Sbjct: 76  TTNKIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMH 135

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
           ++ G    V++ F  L     + P+  TF  VL++C+  ++
Sbjct: 136 SKQGFPHLVVKYFGLLWN-SGVWPNEFTFAIVLSSCARLEM 175


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 162/549 (29%), Positives = 296/549 (53%), Gaps = 46/549 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A   L      +++HC++LK GF  +V+V+ +L+  Y +  ++  AHK+
Sbjct: 148 PDFYTFPPVLKACLSLADG---EKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKV 204

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           FV++P   V SWN++ISG+ Q+G   +AL +   ++  E+  D  + +S L  C Q   +
Sbjct: 205 FVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDV 264

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G+ +H  ++K+ LE  V ++N LI+MY K G ++DA  VF  M  +D++SWNS+IAA 
Sbjct: 265 VGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAY 324

Query: 181 ARNGNLELAFGFLHRL----PNPDTISY-------------------------------- 204
            +N +   A GF   +      PD ++                                 
Sbjct: 325 EQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVD 384

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N ++N  A+ G I+ A  +   +PS +  SWN+++TGY       EA+  +  M+ 
Sbjct: 385 IVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEE 444

Query: 261 -KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            + +  ++ T+ ++L   + + AL  GM IH  +IK  L   + VA+ L+DMY KCG++E
Sbjct: 445 GRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLE 504

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A S+F  + ++  V WNA+I+    +G   K ++LF+ ++    ++ D +TF+++L+AC
Sbjct: 505 DAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRA-DGVKADHITFVSLLSAC 563

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH+ +  D+    F++M K+Y IKP ++H   M+ L G+ G + +A  ++  +   +   
Sbjct: 564 SHSGL-VDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADAS 622

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W  LL+A     + ++   ++  +++++ ++   YV+L N+Y + G W+ A  +R+  R
Sbjct: 623 IWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLAR 682

Query: 500 ERGLRKEAG 508
           +RGLRK  G
Sbjct: 683 DRGLRKTPG 691



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/468 (27%), Positives = 225/468 (48%), Gaps = 47/468 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH  +L  G   +V + T L+  Y  +  L+ +   F  I + ++ SWNS++S YV+ 
Sbjct: 68  KQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRR 127

Query: 83  GKYRKALNLFVEL-ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           G+YR +++   EL   S +  D Y+F   L AC  L     G  +H  ++K   E  V +
Sbjct: 128 GRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFEHDVYV 184

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP-- 199
           A  LI +Y + G+VE A  VF +M  +D+ SWN++I+   +NGN+  A   L R+     
Sbjct: 185 AASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEV 244

Query: 200 --DTISY-----------------------------------NEVINGIAQFGDIEDAIM 222
             DT++                                    N +IN  ++FG ++DA  
Sbjct: 245 KMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQR 304

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           +   M   +  SWNSI+  Y   +    AL  F EM    +  D  T  ++ S    LS 
Sbjct: 305 VFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSD 364

Query: 283 LTWGMLIHSCVIK-QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
              G  +H  V++ + L+  IV+ +AL++MY+K G ++ A ++F  L  +++++WN +IT
Sbjct: 365 RRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLIT 424

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYA+NG  ++ I+ +  ++  R + P+  T++++L A SH       +  +   +     
Sbjct: 425 GYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLF 484

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
           +   V  C  +I + G+ G +  A  +  E+      V W A++S+ G
Sbjct: 485 LDVFVATC--LIDMYGKCGRLEDAMSLFYEIP-QETSVPWNAIISSLG 529



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 146/294 (49%), Gaps = 38/294 (12%)

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           ++ +   +H+ ++     + VV+   L+ +Y   G +  +   F  +  K+I SWNS+++
Sbjct: 63  NINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVS 122

Query: 179 ASARNGNLELAFGFLHRLPN-----PDTISYNEVINGI---------------------- 211
           A  R G    +   +  L +     PD  ++  V+                         
Sbjct: 123 AYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMHCWVLKMGFEHDV 182

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     ++FG +E A  +   MP  +  SWN++++G+     V EAL +   M+++
Sbjct: 183 YVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTE 242

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           +V MD  T S+ML   A  + +  G+L+H  VIK GL++ + V++AL++MYSK G+++ A
Sbjct: 243 EVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDA 302

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
             +F  +  ++LV+WN++I  Y +N D    +  F+++  V  ++PD +T +++
Sbjct: 303 QRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFV-GMRPDLLTVVSL 355



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 162/329 (49%), Gaps = 27/329 (8%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           D +   +++   A  GD+  +      +   N  SWNS+++ YV R R  +++    E+ 
Sbjct: 82  DVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELL 141

Query: 260 S-KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           S   V  D YTF  +L     L+    G  +H  V+K G +  + VA++L+ +YS+ G V
Sbjct: 142 SLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAV 198

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           E+A  +F  +  +++ +WNAMI+G+ +NG++ + + + +++KT  +++ D+VT  ++L  
Sbjct: 199 EVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKT-EEVKMDTVTVSSMLPI 257

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM-----IRELG 433
           C+ ++     V  +   +   +G++  V    ++I +  + G +  AQR+     +R+L 
Sbjct: 258 CAQSNDVVGGVLVHLYVIK--HGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDL- 314

Query: 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVM-LCNLYTSHGNWDVAS 492
                V W ++++A     D   A     E++ +    D + V+ L +++    +  +  
Sbjct: 315 -----VSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGR 369

Query: 493 VMRNFMRERGLRKEAGCSWIEVENVAAHS 521
            +  F+          C W+EV+ V  ++
Sbjct: 370 AVHGFV--------VRCRWLEVDIVIGNA 390



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 10/170 (5%)

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           +H+ ++  G    +V+ + L+ +Y+  G + ++ + F+ + RKN+ +WN+M++ Y R G 
Sbjct: 70  LHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGR 129

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAAC-SHTDIPFDKVSEYFESMTKDYGIKPTVE 407
               ++   +L ++  ++PD  TF  VL AC S  D       E         G +  V 
Sbjct: 130 YRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD------GEKMHCWVLKMGFEHDVY 183

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
              S+I L  + G V  A ++  ++     G  W A++  SG C + +VA
Sbjct: 184 VAASLIHLYSRFGAVEVAHKVFVDMPVRDVG-SWNAMI--SGFCQNGNVA 230


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 166/561 (29%), Positives = 296/561 (52%), Gaps = 47/561 (8%)

Query: 1   PNEYVLFHLLRASSD-LGWDTYCQQLHCYILKSGFL-SNVFVSTALMGFYRKINSLADAH 58
           PN +     +RA  + + W    +Q+H Y +++G   + V V   L+  Y K   +  A 
Sbjct: 99  PNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHAR 158

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
            +F  +     VSWNS+I+G  Q+  +  A+  +  + ++ +    ++  SAL++C  LG
Sbjct: 159 SVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLG 218

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            + LG   H + +K  L+  V ++N L+ +Y +   + +   VF  M+++D +SWN+VI 
Sbjct: 219 CILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIG 278

Query: 179 ASARNGN-----LELAFGFLHRLPNPDTISY----------------------------- 204
           A A +G      +E+    +    +P+ +++                             
Sbjct: 279 ALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVK 338

Query: 205 ------NEVINGIAQFGDIEDAIMILSSMPSPNSS-SWNSILTGYVNRNRVPEALHLFGE 257
                 N ++    + G++E+   I S M       SWNS+++GY++   + +A+ L   
Sbjct: 339 DDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWL 398

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M  +   +D +TF+T+LS  A ++ L  GM +H+C I+  L++ +V+ SAL+DMYSKCG+
Sbjct: 399 MMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGR 458

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           ++ A   F  +  +NL +WN+MI+GYAR+G     + LF ++K    L PD +TF+ VL+
Sbjct: 459 IDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQL-PDHITFVGVLS 517

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           ACSH  +  D+  EYF+SMT+ YG+ P VEH   M+ L+G+ GE+ + +  I ++     
Sbjct: 518 ACSHIGL-VDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPN 576

Query: 438 GVVWRALLSA--SGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
            ++WR +L A   G     ++ R +A  +  ++  +   YV+L N+Y S G W+  +  R
Sbjct: 577 ILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTR 636

Query: 496 NFMRERGLRKEAGCSWIEVEN 516
             MRE  ++KEAGCSW+ +++
Sbjct: 637 RAMREAAVKKEAGCSWVTMKD 657



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 185/399 (46%), Gaps = 44/399 (11%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
            H  +LK GF S++F+   L+  Y +I     A K+F E+P  + V+W  LISGY Q+G 
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGM 81

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQ-LGSLQLGMAIHSKIVKYSL-ERGVVIA 142
              A  +  E+       + ++F SA+ AC + +   + G  +H   ++  L +  V + 
Sbjct: 82  PEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVG 141

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA------------- 189
           N LI+MY KCG ++ A  VFG M+DKD +SWNS+I    +N   E A             
Sbjct: 142 NGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLM 201

Query: 190 ---FGFLHRLP-----------------------NPDTISYNEVINGIAQFGDIEDAIMI 223
              F  +  L                        + D    N ++   A+   + +   +
Sbjct: 202 PSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKV 261

Query: 224 LSSMPSPNSSSWNSILTGYVNRN-RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
            S M   +  SWN+++    +    V EA+ +F EM       +  TF  +L+ ++ LS 
Sbjct: 262 FSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLST 321

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC-RKNLVTWNAMIT 341
                 IH+ ++K  +     + +ALL  Y K G++E  + +F  +  R++ V+WN+MI+
Sbjct: 322 SKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMIS 381

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           GY  N  L K ++L   L   R  + D  TF  VL+AC+
Sbjct: 382 GYIHNELLCKAMDLV-WLMMQRGQRLDCFTFATVLSACA 419



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
           L H  V+K G D+ + + + L+++Y + G    A  +F  +  +N VTW  +I+GY +NG
Sbjct: 21  LFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNG 80

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
                  + +++       P+   F + + AC  +
Sbjct: 81  MPEDACGVLKEM-IFEGFLPNRFAFGSAIRACQES 114


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 162/524 (30%), Positives = 270/524 (51%), Gaps = 36/524 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            Q+   I+  G   N FV+   +    +   +  A K+F +IPQP+  +WN++  GY+Q+
Sbjct: 29  HQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQN 88

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G +R  + LF EL R     + ++F   + +CG+L  ++ G  +H    K+  +    +A
Sbjct: 89  GHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVA 148

Query: 143 NCLIDMYGKCGSVEDAIGVFGEM-------------------------------IDKDII 171
             LIDMY K G VEDA  VFGEM                                ++D++
Sbjct: 149 TSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVV 208

Query: 172 SWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
            W+ +I+    + N+  A     ++PN DT+S+N ++NG A  G++E    +   MP  N
Sbjct: 209 MWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERN 268

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEM--QSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
             SWN ++ GYV      E L  F  M  +   +P D +T   +LS  + L AL  G  +
Sbjct: 269 VFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPND-FTLVAVLSACSRLGALDMGKWV 327

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H      G   ++ V + L+DMY+KCG +E A  +F  L RK++++WN +I G A +G  
Sbjct: 328 HVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHA 387

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409
              + +F+++K+  + +PD VTF+ +L+AC+H  +  D    YF+SM   Y I P +EH 
Sbjct: 388 PDALGMFDRMKSEGE-EPDGVTFVGILSACTHMGLVKDGFL-YFKSMVDHYSIVPQIEHY 445

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469
             M+ L+G+ G + +A   IR++      V+W ALL A     ++++A ++   +I+LE 
Sbjct: 446 GCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIAELALQRLIELEP 505

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
           ++   +VM+ N+Y   G  +  + ++  MR+ G RK  GCS IE
Sbjct: 506 NNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCSVIE 549



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 183/412 (44%), Gaps = 55/412 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +    ++++   L      +++HC   K GF SN FV+T+L+  Y K   + DA+K+
Sbjct: 108 PNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKV 167

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+ + +VV W ++I+GY+  G       LF      ++  +      ++   G + S 
Sbjct: 168 FGEMHERNVVVWTAIINGYILCGDVVSGRRLF------DLAPERDVVMWSVLISGYIESK 221

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
              MA   ++      R  +  N +++ Y   G VE    VF EM ++++ SWN +I   
Sbjct: 222 N--MAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGY 279

Query: 181 ARNG----NLELAFGFL---HRLPN--------------------------PDTISY--- 204
            +NG     LE     L   H +PN                           ++I Y   
Sbjct: 280 VKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGN 339

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +I+  A+ G IE+A+++ + +   +  SWN+I+ G       P+AL +F  M+S
Sbjct: 340 LFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKS 399

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGML-IHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           +    D  TF  +LS    +  +  G L   S V    +   I     ++D+  + G ++
Sbjct: 400 EGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLD 459

Query: 320 IADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFE-QLKTVRDLQPDS 369
            A +  R +    + V W A++ G  R   L K +E+ E  L+ + +L+P++
Sbjct: 460 QALNFIRKMPIEPDAVIWAALL-GACR---LYKNVEIAELALQRLIELEPNN 507



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 142/312 (45%), Gaps = 17/312 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++ L  +L A S LG     + +H Y    G+  N+FV   L+  Y K   + +A  +
Sbjct: 303 PNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVV 362

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  ++SWN++I+G    G    AL +F  ++      D  +F   L+AC  +G +
Sbjct: 363 FNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLV 422

Query: 121 QLG-MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G +   S +  YS+   +    C++D+ G+ G ++ A+    +M I+ D + W +++ 
Sbjct: 423 KDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLG 482

Query: 179 ASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS----- 229
           A     N+E+A   L RL    PN +  ++  V N     G  ED   +  +M       
Sbjct: 483 ACRLYKNVEIAELALQRLIELEPN-NPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRK 541

Query: 230 -PNSSSW---NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA-GLSALT 284
            P  S     +S++  Y    R  E   ++  ++   + +  + +   LS +A GL    
Sbjct: 542 LPGCSVIECNDSVVEFYSLDERHSETESIYRVLKGLTMLLRSHGYVPNLSDVAHGLGVGL 601

Query: 285 WGMLIHSCVIKQ 296
           W   IHS ++ Q
Sbjct: 602 WDPTIHSALLLQ 613


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 167/554 (30%), Positives = 290/554 (52%), Gaps = 42/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++     LL+A +        +++H  + + G  + ++V TAL+  Y K  S+ DA ++
Sbjct: 304 PDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEV 363

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   +VVSW ++I+G+ Q G+  +A   F ++  S I  +  +F S L AC +  +L
Sbjct: 364 FNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSAL 423

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH +I+K        +   L+ MY KCGS+ DA  VF  +  +++++WN++I A 
Sbjct: 424 KQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAY 483

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVING-------------------------- 210
            ++   + A      L      PD+ ++  ++N                           
Sbjct: 484 VQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDL 543

Query: 211 ------IAQF---GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                 ++ F   GD+  A+ + + MP  +  SWN+I+ G+V       A   F  MQ  
Sbjct: 544 HIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQES 603

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  D+ TF+ +L+  A   ALT G  +H+ + +  LD  +VV + L+ MY+KCG ++ A
Sbjct: 604 GVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDA 663

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F +L +KN+ +W +MITGYA++G   + +ELF Q++    ++PD +TF+  L+AC+H
Sbjct: 664 HLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQ-EGVKPDWITFVGALSACAH 722

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  + +  +FESM KD+ I+P +EH   M+ L G+ G +  A   I ++       +W
Sbjct: 723 AGLIKEGL-HHFESM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLW 780

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL A     D+++A   A + ++L+ + D VYV+L N+Y + G W   + MR  M +R
Sbjct: 781 GALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDR 840

Query: 502 GLRKEAGCSWIEVE 515
           G+ K+ G SWIEV+
Sbjct: 841 GVVKKPGQSWIEVD 854



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/419 (25%), Positives = 216/419 (51%), Gaps = 40/419 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++Y   ++L A +D        +L   IL +G+ +++FV TAL+  + K   + DA K+
Sbjct: 203 PDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKV 262

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+  +++W S+I+G  +  ++++A NLF  +E   +  D  +F S L AC    +L
Sbjct: 263 FNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEAL 322

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H+++ +  L+  + +   L+ MY KCGS+EDA+ VF  +  ++++SW ++IA  
Sbjct: 323 EQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGF 382

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGI------------------------- 211
           A++G +E AF F +++      P+ +++  ++                            
Sbjct: 383 AQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDD 442

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     A+ G + DA  +   +   N  +WN+++T YV   +   A+  F  +  +
Sbjct: 443 RVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKE 502

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D  TF+++L+      AL  G  + S +I+ G ++ + + +AL+ M+  CG +  A
Sbjct: 503 GIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSA 562

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            ++F  +  ++LV+WN +I G+ ++G+     + F+ ++    ++PD +TF  +L AC+
Sbjct: 563 MNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQE-SGVKPDQITFTGLLNACA 620



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 189/400 (47%), Gaps = 40/400 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H +I  S    ++F+   L+  Y K  +   A ++F E+P   V SWN L+ GYVQ 
Sbjct: 124 ERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQH 183

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            +Y +A  L  ++ +  +  D Y+F   L AC    ++  G  + S I+    +  + + 
Sbjct: 184 RRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVG 243

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
             LI+M+ KCG V+DA+ VF  +  +D+I+W S+I   AR+   + A      +      
Sbjct: 244 TALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQ 303

Query: 199 PDTISY-----------------------------NEVINGIA------QFGDIEDAIMI 223
           PD +++                              E+  G A      + G +EDA+ +
Sbjct: 304 PDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEV 363

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
            + +   N  SW +++ G+    R+ EA   F +M    +  +  TF ++L   +  SAL
Sbjct: 364 FNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSAL 423

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH  +IK G      V +ALL MY+KCG +  A ++F  + ++N+V WNAMIT Y
Sbjct: 424 KQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAY 483

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
            ++      +  F+ L     ++PDS TF ++L  C   D
Sbjct: 484 VQHEKYDNAVATFQALLK-EGIKPDSSTFTSILNVCKSPD 522



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 171/347 (49%), Gaps = 40/347 (11%)

Query: 73  NSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132
           N+ ++   ++G+  +A+ + + ++   I     +++S L  C +  +L  G  IH+ I  
Sbjct: 73  NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKF 132

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF 192
             ++  + + N LI MY KCG+   A  +F EM DKD+ SWN ++    ++   E AF  
Sbjct: 133 SKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRL 192

Query: 193 LHRLPN----PDTISYNEVINGIA-----------------------------------Q 213
             ++      PD  ++  ++N  A                                   +
Sbjct: 193 HEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIK 252

Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
            G ++DA+ + +++P  +  +W S++TG     +  +A +LF  M+ + V  D+  F ++
Sbjct: 253 CGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSL 312

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           L       AL  G  +H+ + + GLD  I V +ALL MY+KCG +E A  +F  +  +N+
Sbjct: 313 LKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNV 372

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           V+W AMI G+A++G + +    F ++     ++P+ VTF+++L ACS
Sbjct: 373 VSWTAMIAGFAQHGRMEEAFLFFNKM-IESGIEPNRVTFMSILGACS 418



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 168/375 (44%), Gaps = 56/375 (14%)

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDII----SWNSVIAASARNGNLELAFGFLHRLP 197
           AN  ++   K G + +A+ V   +    I     +++S++    ++ NL    G   R+ 
Sbjct: 72  ANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNL----GDGERIH 127

Query: 198 N--------PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
           N        PD   +N +I+  A+ G+   A  I   MP  +  SWN +L GYV   R  
Sbjct: 128 NHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYE 187

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
           EA  L  +M    V  D+YTF  ML+  A    +  G  + S ++  G D  + V +AL+
Sbjct: 188 EAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALI 247

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
           +M+ KCG V+ A  +F +L R++L+TW +MITG AR+    +   LF Q+     +QPD 
Sbjct: 248 NMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLF-QVMEEEGVQPDK 306

Query: 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429
           V F+++L AC+H +                                  ++G+  R    +
Sbjct: 307 VAFVSLLKACNHPEAL--------------------------------EQGK--RVHARM 332

Query: 430 RELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL-EGDSDYVYVMLCNLYTSHGNW 488
           +E+G  +   V  ALLS    C  ++     A EV  L +G +   +  +   +  HG  
Sbjct: 333 KEVGLDTEIYVGTALLSMYTKCGSME----DALEVFNLVKGRNVVSWTAMIAGFAQHGRM 388

Query: 489 DVASVMRNFMRERGL 503
           + A +  N M E G+
Sbjct: 389 EEAFLFFNKMIESGI 403



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 4/164 (2%)

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
           N+   N+ L       ++ EA+ +   + S  + +   T+S++L        L  G  IH
Sbjct: 68  NTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIH 127

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
           + +    +   I + + L+ MY+KCG    A  +F  +  K++ +WN ++ GY ++    
Sbjct: 128 NHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYE 187

Query: 351 KVIELFEQLKTVRD-LQPDSVTFLNVLAACSHTDIPFDKVSEYF 393
           +   L EQ+  V+D ++PD  TF+ +L AC+      DK  E F
Sbjct: 188 EAFRLHEQM--VQDGVKPDKYTFVYMLNACADAK-NVDKGGELF 228


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 163/520 (31%), Positives = 273/520 (52%), Gaps = 40/520 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NEY     L A S L       Q+H  I KS  LS+V++ +AL+  Y K  ++ DA ++F
Sbjct: 151 NEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVF 210

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            E+   +VVSWNSLI+ Y Q+G   +AL +F  +  S +  D  +  S ++AC  L +++
Sbjct: 211 DEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIK 270

Query: 122 LGMAIHSKIVKY-SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +G  +H+++VK   L   ++++N  +DMY KC  +++A  +F  M               
Sbjct: 271 VGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSM--------------- 315

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                           P  + I+   +++G A     + A ++ + M   N  SWN+++ 
Sbjct: 316 ----------------PIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIA 359

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL-- 298
           GY       EAL LF  ++ + V    YTF+ +L   A L+ L  GM  H  V+K G   
Sbjct: 360 GYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKF 419

Query: 299 ----DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
               +  I V ++L+DMY KCG VE    +FR +  ++ V+WNAMI G+A+NG   + +E
Sbjct: 420 QSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALE 479

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
           LF ++    + +PD +T + VL+AC H     ++   YF SMT+D+G+ P  +H   M+ 
Sbjct: 480 LFREMLDSGE-KPDHITMIGVLSACGHAGF-VEEGRHYFSSMTRDFGVAPLRDHYTCMVD 537

Query: 415 LMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474
           L+G+ G +  A+ +I E+      V+W +LL+A     ++ + +  A ++ ++E  +   
Sbjct: 538 LLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGP 597

Query: 475 YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           YV+L N+Y   G W  A  +R  MR+ G+ K+ GCSWI++
Sbjct: 598 YVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKI 637



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 135/255 (52%), Gaps = 32/255 (12%)

Query: 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN 185
           +H+ ++K      V I N LID Y KCGS                               
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGS------------------------------- 70

Query: 186 LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245
           LE       ++P  +  ++N V+ G+ + G +++A  +  SMP  +  +WNS+++G+   
Sbjct: 71  LEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQH 130

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
           +R  EAL+ F  M  +   ++EYTF++ LS  +GL+ +  G+ IHS + K    + + + 
Sbjct: 131 DRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIG 190

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           SAL+DMYSKCG V  A  +F  +  +N+V+WN++IT Y +NG   + +++F Q+     +
Sbjct: 191 SALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVF-QVMLESWV 249

Query: 366 QPDSVTFLNVLAACS 380
           +PD VT  +V++AC+
Sbjct: 250 EPDEVTLASVISACA 264



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 21/243 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL------SNVFVSTALMGFYRKINSL 54
           P  Y   ++L+A +DL       Q H ++LK GF        ++FV  +L+  Y K   +
Sbjct: 384 PTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCV 443

Query: 55  ADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC 114
            + + +F ++ +   VSWN++I G+ Q+G   +AL LF E+  S    D  +    L+AC
Sbjct: 444 EEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSAC 503

Query: 115 GQLGSLQLGMAIHSKIVKYSLERGVVIA------NCLIDMYGKCGSVEDAIGVFGEM-ID 167
           G  G ++ G    S     S+ R   +A       C++D+ G+ G +E+A  +  EM + 
Sbjct: 504 GHAGFVEEGRHYFS-----SMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQ 558

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS---YNEVINGIAQFGDIEDAIMIL 224
            D + W S++AA   + N+ L      +L   +T +   Y  + N  A+ G   DA+ + 
Sbjct: 559 PDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVR 618

Query: 225 SSM 227
             M
Sbjct: 619 KLM 621


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 154/485 (31%), Positives = 282/485 (58%), Gaps = 10/485 (2%)

Query: 34  FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFV 93
           +L N F+S AL  F    N +  A   + ++  P+V  +N++I G+VQS +  +AL L+V
Sbjct: 15  YLMNQFIS-ALSTF----NRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYV 69

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
           ++ R+ +   +Y+F S + ACG +  L+   A+H  + +   +  V +   L+D Y   G
Sbjct: 70  QMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMG 129

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQ 213
            +E+++ VF EM ++D+ +W ++++   R G++  A      +P+ +  ++N +I+G A+
Sbjct: 130 RIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYAR 189

Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
             +++ A ++ + MP+ +  SW +++  Y    R  EAL +F EM    +  DE T +T+
Sbjct: 190 LREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATV 249

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           +S  A L AL  G  IH  +++ G +  + + SAL+DMY+KCG ++ +  MF  L  KNL
Sbjct: 250 ISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNL 309

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393
             WN++I G A +G   + + +F++++    ++P+ VTF++VL+AC+H  +  ++  + F
Sbjct: 310 FCWNSVIEGLAVHGYAEEALAMFDKMER-EKIKPNGVTFVSVLSACNHAGL-IEEGRKRF 367

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD 453
            SMT+D+ I P VEH   M+ L+ + G +  A ++IR +      V+W ALLS      +
Sbjct: 368 ASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRN 427

Query: 454 LDVARISAAEVIKLE-GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE-AGCSW 511
           L++A+++A +++ LE G+S Y Y +L N+      W  A+ +R  M+E+G+ K   G SW
Sbjct: 428 LEIAQVAANKLMVLEPGNSGY-YTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSW 486

Query: 512 IEVEN 516
           IE+E+
Sbjct: 487 IEMES 491



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 174/364 (47%), Gaps = 20/364 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  Y    L++A   +    + + +H ++ ++GF S+VFV T+L+ FY  +  + ++ ++
Sbjct: 78  PTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRV 137

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+  V +W +++SG V+ G    A  LF  +    +     ++ + +    +L  +
Sbjct: 138 FDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNL----ATWNTLIDGYARLREV 193

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM----IDKDIISWNSV 176
            +   + +++      R ++    +I+ Y +     +A+GVF EM    I  D ++  +V
Sbjct: 194 DVAELLFNQMPA----RDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATV 249

Query: 177 IAASARNGNLELA----FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           I+A A  G L+L     +  +    N D    + +I+  A+ G ++ ++++   +   N 
Sbjct: 250 ISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNL 309

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
             WNS++ G        EAL +F +M+ + +  +  TF ++LS       +  G    + 
Sbjct: 310 FCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFAS 369

Query: 293 VIK-QGLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITG--YARNGD 348
           + +   +   +     ++D+ SK G +E A  + R++    N V W A+++G    RN +
Sbjct: 370 MTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLE 429

Query: 349 LTKV 352
           + +V
Sbjct: 430 IAQV 433



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 89/171 (52%), Gaps = 7/171 (4%)

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
           N D    N+ I+ ++ F  ++ A++  + M  PN   +N+++ G+V   +  +AL L+ +
Sbjct: 11  NQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQ 70

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M   +V    YTF +++     +S L +   +H  V + G D+ + V ++L+D YS  G+
Sbjct: 71  MLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGR 130

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           +E +  +F  +  +++  W  M++G  R GD++    LF       D+ PD
Sbjct: 131 IEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLF-------DMMPD 174


>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
 gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
          Length = 605

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 173/536 (32%), Positives = 282/536 (52%), Gaps = 50/536 (9%)

Query: 20  TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLAD-AHKMFVEIPQPSVVSWNSLISG 78
           T  +Q H +++KSG  ++ FV  +L+  Y K+ S +    ++F  +    VVSW S+I+G
Sbjct: 77  TRGRQFHAHVVKSGLETDRFVGNSLLSLYFKLGSDSLLTRRVFDGLFVKDVVSWASMITG 136

Query: 79  YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
           YV+ GK   A+ LF ++  S I  + ++ ++ + AC ++G+L LG   H  +V+   +  
Sbjct: 137 YVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACSEIGNLVLGKCFHGVVVRRGFDSN 196

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL----- 193
            VI + LIDMYG+     DA  +F E+++ D + W +VI+A  RN   E A GF      
Sbjct: 197 PVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTRNDLYEEALGFFYLKHR 256

Query: 194 -HRLPNPDTISYNEVINGIAQFGD-----------------------------------I 217
            HRL  PD  ++  V+      G                                    +
Sbjct: 257 AHRLC-PDNYTFGSVLTACGNLGRLRQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAV 315

Query: 218 EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277
           E +  +   M + NS SW+++L  Y +     +A++LF EM+  D+    Y+F T++   
Sbjct: 316 EKSQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREMKEVDL----YSFGTVIRAC 371

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
           AGL+A+T G  IH   I++G    ++V SAL+D+Y+KCG +  A  +F  +  +NL+TWN
Sbjct: 372 AGLAAVTPGKEIHCQYIRKGGWRDVIVESALVDLYAKCGCINFAYRVFDRMPTRNLITWN 431

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397
           +MI G+A+NG     I++FE +     ++PD ++F+ +L ACSHT +  D+   YF+ MT
Sbjct: 432 SMIHGFAQNGSSGIAIQIFEAM-IKEGIKPDCISFIGLLFACSHTGL-VDQARHYFDLMT 489

Query: 398 KDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA-SGACSDLDV 456
             YGIKP VEH   M+ L+G+ G +  A+ +I      +   +W  LL A +  C++   
Sbjct: 490 GKYGIKPGVEHYNCMVDLLGRAGLLEEAENLIENAECRNDSSLWLVLLGACTTTCTNSAT 549

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           A   A ++++LE      YV L N+Y + G WD A  +R  M+ R L+K  G SW+
Sbjct: 550 AERIAKKLMELEPQCYLSYVHLANVYRAVGRWDDAVKVRELMKNRQLKKMPGQSWM 605



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 185/394 (46%), Gaps = 22/394 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + L  +++A S++G     +  H  +++ GF SN  + ++L+  Y + +  +DA ++
Sbjct: 160 PNGFTLSAVIKACSEIGNLVLGKCFHGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQL 219

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGS 119
           F E+ +P  V W ++IS + ++  Y +AL  F    R+  +  D Y+F S L ACG LG 
Sbjct: 220 FDELLEPDPVCWTTVISAFTRNDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGR 279

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+ G  IH+K++ Y     VV  + L+DMYGKCG+VE +  +F  M +++ +SW++++A 
Sbjct: 280 LRQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLAV 339

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
              NG+ E A      +   D  S+  VI   A    +     I           W  ++
Sbjct: 340 YCHNGDYEKAVNLFREMKEVDLYSFGTVIRACAGLAAVTPGKEI--HCQYIRKGGWRDVI 397

Query: 240 TG------YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
                   Y     +  A  +F  M ++++     T+++M+ G A   +    + I   +
Sbjct: 398 VESALVDLYAKCGCINFAYRVFDRMPTRNL----ITWNSMIHGFAQNGSSGIAIQIFEAM 453

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK-----NLVTWNAMITGYARNGD 348
           IK+G+    +    LL   S  G V+ A   F  +  K      +  +N M+    R G 
Sbjct: 454 IKEGIKPDCISFIGLLFACSHTGLVDQARHYFDLMTGKYGIKPGVEHYNCMVDLLGRAGL 513

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           L +   L E      + + DS  +L +L AC+ T
Sbjct: 514 LEEAENLIENA----ECRNDSSLWLVLLGACTTT 543



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 6/200 (3%)

Query: 250 EALHLFGEMQSKDVPMDE-YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
           +ALHL   +   D  +++   ++++L     + + T G   H+ V+K GL+    V ++L
Sbjct: 42  DALHLLNSIDLYDSRINKPLLYASLLQTCIKVDSFTRGRQFHAHVVKSGLETDRFVGNSL 101

Query: 309 LDMYSKCGQVEI-ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           L +Y K G   +    +F  L  K++V+W +MITGY R G     IELF  +     ++P
Sbjct: 102 LSLYFKLGSDSLLTRRVFDGLFVKDVVSWASMITGYVREGKSGIAIELFWDMLD-SGIEP 160

Query: 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQR 427
           +  T   V+ ACS  +I    + + F  +    G         S+I + G+      A++
Sbjct: 161 NGFTLSAVIKACS--EIGNLVLGKCFHGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQ 218

Query: 428 MIRELGFGSYGVVWRALLSA 447
           +  EL      V W  ++SA
Sbjct: 219 LFDEL-LEPDPVCWTTVISA 237


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 165/556 (29%), Positives = 280/556 (50%), Gaps = 73/556 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDT--YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLA--- 55
           P++Y    LL A+  L   +  +C QL C +LKSG    + VS AL+  Y K  +L    
Sbjct: 155 PDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATR 214

Query: 56  DAHKMFVEIPQPSVVSW-------------------------------NSLISGYVQSGK 84
           DA K+  E+P    ++W                               N++ISGYV SG 
Sbjct: 215 DARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGM 274

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK----YSLERGVV 140
             +A  LF  +    +  D ++FTS L+AC   G    G ++H +I +    +  E  + 
Sbjct: 275 VVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALP 334

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           + N L+ +Y KCG++  A  +F  M  K                               D
Sbjct: 335 VNNALVTLYSKCGNIAVARRIFDNMKSK-------------------------------D 363

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +S+N +++G  +   ++ A+ +   MP  N  SW  +++GYV+     +AL LF  M++
Sbjct: 364 VVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRA 423

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +DV   +YT++  +S    L +L  G  +H  +++ G + S    +AL+ MY++CG V+ 
Sbjct: 424 EDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKE 483

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A+ MF  +   + V+WNAMI+   ++G   + +ELF+++     + PD ++FL VL AC+
Sbjct: 484 ANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRM-VAEGIYPDRISFLTVLTACN 542

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H+ +  D+  +YFESM +D+GI P  +H   +I L+G+ G +  A+ +I+ + F     +
Sbjct: 543 HSGL-VDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSI 601

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W A+LS      D+++   +A ++ K+    D  Y++L N Y++ G W  A+ +R  MR+
Sbjct: 602 WEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRD 661

Query: 501 RGLRKEAGCSWIEVEN 516
           RG++KE GCSWIE  N
Sbjct: 662 RGVKKEPGCSWIEAGN 677



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 204/434 (47%), Gaps = 53/434 (12%)

Query: 41  STALMGFYRKINSLADAHKMFVEIPQP--SVVSWNSLISGYVQSGKYRKALNLFVELERS 98
           +T+L+  Y     L  A   F  +PQ     V  N++IS Y ++     A+ +F  L  S
Sbjct: 91  ATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLAS 150

Query: 99  -EIYADAYSFTSALAACGQLG--SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
             +  D YSFT+ L+A G L   S++    +   ++K      + ++N L+ +Y KC ++
Sbjct: 151 GSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEAL 210

Query: 156 E---DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIA 212
           E   DA  V  EM DKD ++W +++    R G++  A              + EV     
Sbjct: 211 EATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSV-----------FEEV----- 254

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
              D++  ++            WN++++GYV+   V EA  LF  M  + VP+DE+TF++
Sbjct: 255 ---DVKFDVV------------WNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTS 299

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQG----LDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           +LS  A       G  +H  + +       +A++ V +AL+ +YSKCG + +A  +F ++
Sbjct: 300 VLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNM 359

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDK 388
             K++V+WN +++GY  +  L K +E+FE++    +L     +++ +++   H     D 
Sbjct: 360 KSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNEL-----SWMVMVSGYVHGGFSEDA 414

Query: 389 VSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM---IRELGFGSYGVVWRALL 445
           +  +     +D  +KP        I   G+ G +   +++   + +LGF        AL+
Sbjct: 415 LKLFNRMRAED--VKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALI 472

Query: 446 SASGACSDLDVARI 459
           +    C  +  A +
Sbjct: 473 TMYARCGAVKEANL 486



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSL--CRKNLVTWNAMITGYARNGDLTKVIELF 356
           D   V A++L+  Y+  G++  A S F ++   R++ V  NA+I+ YAR       + +F
Sbjct: 85  DPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVF 144

Query: 357 EQLKTVRDLQPDSVTFLNVLAACSH 381
             L     L+PD  +F  +L+A  H
Sbjct: 145 RSLLASGSLRPDDYSFTALLSAAGH 169


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 164/560 (29%), Positives = 294/560 (52%), Gaps = 41/560 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N +V   +L+    +        LH  I K G  SN FV TAL+  Y    S+  A + F
Sbjct: 40  NPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAF 99

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             I    +VSW  +++ Y ++ +++ +L LF E+       + ++F   L AC  L +  
Sbjct: 100 DAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFS 159

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           +G ++H  ++K   E  + +   L+D+Y K G   D + VF EM   D+I W+ +I+  A
Sbjct: 160 VGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYA 219

Query: 182 RNGNLELA---FGFLHR---LPNPDTIS-------------------------------- 203
           ++     A   FG + R   LPN  T +                                
Sbjct: 220 QSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVF 279

Query: 204 -YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +++  A+ G +++++ +   +P+ N  +WN+++ GYV      +AL L+  M    
Sbjct: 280 VSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQ 339

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V   E T+S++L   A L+A+  G  IHS  +K   D  +VV +AL+DMY+KCG ++ A 
Sbjct: 340 VQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNAR 399

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F  L  ++ ++WNAMI+GY+ +G + + ++ F+ ++   +  P+ +TF+++L+ACS+ 
Sbjct: 400 LVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQET-ECVPNKLTFVSILSACSNA 458

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  D    YF+SM +DYGI+P +EH   M+ L+G+ G + +A ++I E+       VWR
Sbjct: 459 GL-LDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWR 517

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
           ALL A    +D+D+  +SA ++++++   +  +V+L N+Y     W+  + +R FM+ +G
Sbjct: 518 ALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKG 577

Query: 503 LRKEAGCSWIEVENVAAHSS 522
           ++KE G SWIE + +  + S
Sbjct: 578 VKKEPGLSWIENQGIVHYFS 597



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 174/356 (48%), Gaps = 40/356 (11%)

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
           +P  + VS+ +LI GYVQS +  + ++LF  + R     + + FT+ L     +   +L 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
            ++H+ I K   E    +   LID Y  CGSV  A   F  +  KD++SW  ++A  A N
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 184 GNLELAFGFLHRLP----NPDTISYNEVINGI---------------------------- 211
              + +      +     NP+  ++  V+                               
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 212 -------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
                   +FGD  D + +   MP  +   W+ +++ Y   N+  EA+ LFG+M+   V 
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
            +++TF+++L   A +  L  G  +H  V+K GLD ++ V++AL+D+Y+KCG+++ +  +
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKL 300

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           F  L  +N VTWN MI GY ++GD  K + L++ +   + +Q   VT+ +VL AC+
Sbjct: 301 FMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQ-VQASEVTYSSVLRACA 355



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 165/320 (51%), Gaps = 27/320 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++    +L++ + +      +Q+HC++LK G   NVFVS ALM  Y K   L ++ K+
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKL 300

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F+E+P  + V+WN++I GYVQSG   KAL+L+  +   ++ A   +++S L AC  L ++
Sbjct: 301 FMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAM 360

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IHS  +K   ++ VV+ N LIDMY KCGS+++A  VF  + ++D ISWN++I+  
Sbjct: 361 ELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGY 420

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
           + +G +  A      +      P+ +++  +++  +  G ++       SM       P 
Sbjct: 421 SMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPC 480

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  ++        + +A+ L  E     +P++              +   W  L+ +
Sbjct: 481 MEHYTCMVWLLGRSGHLDKAVKLIEE-----IPLEP-------------NVKVWRALLGA 522

Query: 292 CVIKQGLDASIVVASALLDM 311
           CVI   +D  I+ A  +L +
Sbjct: 523 CVIHNDVDLGIMSAQQILQI 542



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/429 (22%), Positives = 196/429 (45%), Gaps = 84/429 (19%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +    +L+A   L   +  + +H  +LK+ +  +++V   L+  Y K     D  ++
Sbjct: 140 PNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRV 199

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+  V+ W+ +IS Y QS + R+A+ LF ++ R+ +  + ++F S L +C  + +L
Sbjct: 200 FEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENL 259

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           QLG  +H  ++K  L+  V ++N L+D+Y KCG +++++ +F E+ +++ ++WN++I   
Sbjct: 260 QLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGY 319

Query: 181 ARNGNLELAFGF---------------------------------------LHRLPNPDT 201
            ++G+ + A                                          L  + + D 
Sbjct: 320 VQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDV 379

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           +  N +I+  A+ G I++A ++   +   +  SWN++++GY     V EAL  F  MQ  
Sbjct: 380 VVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQET 439

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           +   ++ TF ++LS                                     S  G ++I 
Sbjct: 440 ECVPNKLTFVSILSAC-----------------------------------SNAGLLDIG 464

Query: 322 DSMFRSLCRKN-----LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            + F+S+ +       +  +  M+    R+G L K ++L E++     L+P+   +  +L
Sbjct: 465 QNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIP----LEPNVKVWRALL 520

Query: 377 AACS-HTDI 384
            AC  H D+
Sbjct: 521 GACVIHNDV 529


>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1359

 Score =  284 bits (727), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 157/540 (29%), Positives = 292/540 (54%), Gaps = 45/540 (8%)

Query: 21   YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
            + +Q+HC ++K G  ++ +VST+L+  Y K   + +A  +F  +    +  WN++++ YV
Sbjct: 789  FGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYV 848

Query: 81   QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
            ++     AL LF  + +  +  D+++ ++ ++ C   G    G ++H+++ K  ++    
Sbjct: 849  ENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPA 908

Query: 141  IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-- 198
            I + L+ +Y KCG   DA  VF  M +KD+++W S+I+   +NG  + A      + +  
Sbjct: 909  IESALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDD 968

Query: 199  ----PDTISYNEVINGIA-----------------------------------QFGDIED 219
                PD+     VIN  A                                   + G  E 
Sbjct: 969  DSLKPDSDIMTSVINACAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEM 1028

Query: 220  AIMILSSMPSPNSSSWNSILTGYVNRNRVPE-ALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
            A+ + +SM   N  +WNS+++ Y +RN +PE ++ LF  M S+ +  D  + +++L  I+
Sbjct: 1029 ALKVFTSMRPENIVAWNSMISCY-SRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAIS 1087

Query: 279  GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
              ++L  G  +H   ++ G+ +   + +AL+DMY KCG  + A+++F+ +  K+L+TWN 
Sbjct: 1088 STASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNL 1147

Query: 339  MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
            MI GY  +GD    + LF++LK   +  PD VTFL++++AC+H+    ++   +FE M +
Sbjct: 1148 MIYGYGSHGDCRTALSLFDELKKAGE-TPDDVTFLSLISACNHSGF-VEEGKNFFEIMKQ 1205

Query: 399  DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
            DYGI+P +EH  +M+ L+G+ G +  A   I+ +   +   +W  LLSAS    ++++  
Sbjct: 1206 DYGIEPKMEHYANMVDLLGRAGRLEEAYSFIKAMPTEADSSIWLCLLSASRTHHNVELGI 1265

Query: 459  ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVA 518
            +SA +++++E +    YV L NLY   G  + A+ +   M+ERGL+K+ GCSWIEV +++
Sbjct: 1266 LSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGEMKERGLQKQPGCSWIEVSDIS 1325



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 133/403 (33%), Positives = 211/403 (52%), Gaps = 45/403 (11%)

Query: 23   QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS-VVSWNSLISGYVQ 81
            +Q+H Y+L++    + F+ TAL+  Y K     DA ++FVEI   S VV WN +I G+  
Sbjct: 689  KQIHGYMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGFGG 748

Query: 82   SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
            S     +L L++  + + +   + SFT AL AC Q  +   G  IH  +VK  L+    +
Sbjct: 749  SEICESSLELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDPYV 808

Query: 142  ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLP 197
            +  L+ MY KCG V +A  VF  ++DK +  WN+++AA   N N    LEL FGF+ +  
Sbjct: 809  STSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALEL-FGFMRQKS 867

Query: 198  N-PDTISYNEVINGIAQFG---------------------DIE--------------DAI 221
              PD+ + + VI+  + FG                      IE              DA 
Sbjct: 868  VLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDTDAY 927

Query: 222  MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD--VPMDEYTFSTMLSGIAG 279
            ++  SM   +  +W S+++G     +  EAL +FG+M+  D  +  D    +++++  AG
Sbjct: 928  LVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACAG 987

Query: 280  LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
            L AL++G+ +H  +IK G   ++ V S+L+D+YSKCG  E+A  +F S+  +N+V WN+M
Sbjct: 988  LEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAWNSM 1047

Query: 340  ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            I+ Y+RN      IELF  L   + + PDSV+  +VL A S T
Sbjct: 1048 ISCYSRNNLPELSIELF-NLMLSQGIFPDSVSITSVLVAISST 1089



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 165/380 (43%), Gaps = 57/380 (15%)

Query: 49  RKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE-RSEIYADAYSF 107
           R+++ LAD++         S  S NS I   +Q G+Y +AL+L+ + +  S ++   ++F
Sbjct: 513 RRLSRLADSYI--------SPASVNSGIRALIQKGEYLQALHLYTKHDGSSPLWTSVFTF 564

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF----- 162
            S L AC  L +L  G  IH  I+         IA  L++MY KCG ++ A+ VF     
Sbjct: 565 PSLLKACSSLTNLSSGKTIHGSIIVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQ 624

Query: 163 -----------GEMID------------------------KDIISWNSVIAASARNGNLE 187
                        MID                         D  S + V++   + GN  
Sbjct: 625 SGVSARDVTVCNSMIDGYFKFRRFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEGNFR 684

Query: 188 LAFG------FLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSP-NSSSWNSILT 240
              G       L    + D+     +I+   +FG   DA  +   +    N   WN ++ 
Sbjct: 685 REDGKQIHGYMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIV 744

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           G+        +L L+   +S  V +   +F+  L   +      +G  IH  V+K GLD 
Sbjct: 745 GFGGSEICESSLELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDN 804

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
              V+++LL MYSKCG V  A+++F  +  K L  WNAM+  Y  N +    +ELF  ++
Sbjct: 805 DPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMR 864

Query: 361 TVRDLQPDSVTFLNVLAACS 380
             + + PDS T  NV++ CS
Sbjct: 865 Q-KSVLPDSFTLSNVISCCS 883



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 112/224 (50%), Gaps = 4/224 (1%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
            P+  ++  ++ A + L   ++  Q+H  ++K+G + NVFV ++L+  Y K      A K+
Sbjct: 973  PDSDIMTSVINACAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKV 1032

Query: 61   FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            F  +   ++V+WNS+IS Y ++     ++ LF  +    I+ D+ S TS L A     SL
Sbjct: 1033 FTSMRPENIVAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTASL 1092

Query: 121  QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
              G ++H   ++  +     + N LIDMY KCG  + A  +F +M  K +I+WN +I   
Sbjct: 1093 LKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGY 1152

Query: 181  ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDA 220
              +G+   A      L      PD +++  +I+     G +E+ 
Sbjct: 1153 GSHGDCRTALSLFDELKKAGETPDDVTFLSLISACNHSGFVEEG 1196


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  284 bits (727), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 170/555 (30%), Positives = 278/555 (50%), Gaps = 43/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y    +L+  + +      +Q+H  I K GF S   V  +L+ FY     +  A K+
Sbjct: 249 PNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKL 308

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+    V+SWNS+ISGYV++G   + + +F+++    +  D  +  +   AC  +G+L
Sbjct: 309 FDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTL 368

Query: 121 QLGMAIHSKIVKY-SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            LG  +HS  +K  +L+R V   N L+DMY KCG +  AI VF  M +K ++SW S+I  
Sbjct: 369 LLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITG 428

Query: 180 SARNGNLELAFGFLHRLPN----PDTISYNEVINGIA----------------------- 212
             R G  + A      + +    PD  +   ++N  A                       
Sbjct: 429 YVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETN 488

Query: 213 ------------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                       + G ++DA  + S M   +  SWN+++ GY   +   EAL LF EMQ 
Sbjct: 489 SFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQR 548

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +  P D  T + +L   A L+AL  G  IH   ++ G      V +A++DMY KCG + +
Sbjct: 549 ESKP-DGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVL 607

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A S+F  +  K+LV+W  MI GY  +G  ++ I  F Q++    ++PD V+F+++L ACS
Sbjct: 608 ARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMT-GIEPDEVSFISILYACS 666

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H+ +  D+  + F  M K+  I+P +EH   M+ L+ + G + +A + I+ +       +
Sbjct: 667 HSGL-LDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATI 725

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W ALL       D+ +A   A  + +LE ++   YV+L N+Y     W+    +R  + +
Sbjct: 726 WGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQ 785

Query: 501 RGLRKEAGCSWIEVE 515
           RGL+K  GCSWIE++
Sbjct: 786 RGLKKNPGCSWIEIK 800



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 192/398 (48%), Gaps = 42/398 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++   I  SG + +  +   L+  Y K   L +   +F ++ +  +  WN +IS Y  S
Sbjct: 170 RRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGS 229

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G Y +++NLF ++    I  ++Y+F+S L     +  ++ G  +H  I K        + 
Sbjct: 230 GNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVV 289

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLE-----LAFG-- 191
           N LI  Y     V  A  +F E+ D+D+ISWNS+I+   +NG     +E     L FG  
Sbjct: 290 NSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVD 349

Query: 192 -------------------FLHRLPNPDTISY----------NEVINGIAQFGDIEDAIM 222
                               L ++ +  +I            N +++  ++ GD+  AI 
Sbjct: 350 IDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIR 409

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           +   M      SW S++TGYV       A+ LF EM+S+ V  D Y  +++L+  A    
Sbjct: 410 VFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGN 469

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G ++H  + +  L+ +  V++AL DMY+KCG ++ A  +F  + +K++++WN MI G
Sbjct: 470 LKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGG 529

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           Y +N    + + LF +++  R+ +PD  T   +L AC+
Sbjct: 530 YTKNSLPNEALTLFAEMQ--RESKPDGTTVACILPACA 565



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 151/345 (43%), Gaps = 43/345 (12%)

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135
           I  + + G  + A+ L    + S    D  ++ S L  C +  S++ G  + S I    +
Sbjct: 124 IVEFCEVGDLKNAMELLCSSQNSNF--DLGAYCSILQLCAERKSIRDGRRVRSIIESSGV 181

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
               ++   L+ MY KCG +++   VF ++ +  I  WN +I+  + +GN   +     +
Sbjct: 182 MIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQ 241

Query: 196 L------PNPDTI-----------------------------SYNEVINGIAQF----GD 216
           +      PN  T                              SYN V+N +  F      
Sbjct: 242 MLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRK 301

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           +  A  +   +   +  SWNS+++GYV        + +F +M    V +D  T   +   
Sbjct: 302 VRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVA 361

Query: 277 IAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335
            A +  L  G ++HS  IK   LD  +   + LLDMYSKCG +  A  +F  +  K +V+
Sbjct: 362 CANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVS 421

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           W +MITGY R G     I+LF+++K+ R + PD     ++L AC+
Sbjct: 422 WTSMITGYVREGLSDGAIKLFDEMKS-RGVVPDVYAVTSILNACA 465


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  284 bits (727), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 166/541 (30%), Positives = 293/541 (54%), Gaps = 52/541 (9%)

Query: 23  QQLHCYILKSGFLSN-VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           Q++H Y++++  +   + +  AL+  Y K N++ +A  +F  +P    VSWNS+ISG   
Sbjct: 374 QEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDH 433

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           + ++ +A+  F  + R+ +    +S  S L++C  LG + LG  IH + +K  L+  V +
Sbjct: 434 NERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSV 493

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA--ASARNGNLELAFGFLHRLP-- 197
           +N L+ +Y +   +E+   VF  M + D +SWNS I   A++    L+    FL  +   
Sbjct: 494 SNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAG 553

Query: 198 -NPDTISY-------------------------------NEVINGIAQF----GDIEDAI 221
             P+ +++                               N + N +  F      +ED  
Sbjct: 554 WKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCE 613

Query: 222 MILSSMPS-PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
           +I S M    +  SWN++++GY++   + +A+ L   M  K   +D++T +T+LS  A +
Sbjct: 614 IIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASV 673

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           + L  GM +H+C I+  L+A +VV SAL+DMY+KCG+++ A   F  +  +N+ +WN+MI
Sbjct: 674 ATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMI 733

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           +GYAR+G   K ++LF Q+K    L PD VTF+ VL+ACSH  +  D+  E+F+SM + Y
Sbjct: 734 SGYARHGHGGKALKLFTQMKQHGQL-PDHVTFVGVLSACSHVGL-VDEGFEHFKSMGEVY 791

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC-----SDLD 455
            + P +EH   M+ L+G+ G+V + +  I+ +      ++WR +L   GAC      + +
Sbjct: 792 ELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTIL---GACCRANSRNTE 848

Query: 456 VARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           + R +A  +I+LE  +   YV+L N++ + G W+     R  MR   ++KEAGCSW+ ++
Sbjct: 849 LGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVTMK 908

Query: 516 N 516
           +
Sbjct: 909 D 909



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/411 (28%), Positives = 202/411 (49%), Gaps = 55/411 (13%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            QLH  I K+G  S+VF    L+  + +  +L  A K+F E+PQ ++VSW+ L+SGY Q+
Sbjct: 59  HQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQN 118

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS--LQLGMAIHSKIVKYSLERGVV 140
           G   +A  LF  +  + +  + Y+  SAL AC +LG   L+LGM IH  I K      +V
Sbjct: 119 GMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMV 178

Query: 141 IANCLIDMYGKC-GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL--- 196
           ++N L+ MY  C  S++DA  VF E+  K   SWNS+I+   R G+   AF     +   
Sbjct: 179 LSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQRE 238

Query: 197 -------PN-----------------------------------PDTISYNEVINGIAQF 214
                  PN                                    D    + +++G A++
Sbjct: 239 ATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARY 298

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G I+ A MI   M   N+ + N ++ G   +++  EA  +F EM+   V ++  +++ +L
Sbjct: 299 GLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDL-VEINASSYAVLL 357

Query: 275 SGIAGLSALT----WGMLIHSCVIKQGL-DASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           S     S L      G  +H+ +I+  L D  I++ +AL+++Y+KC  ++ A S+F+ + 
Sbjct: 358 SAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMP 417

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            K+ V+WN++I+G   N    + +  F  ++    + P   + ++ L++C+
Sbjct: 418 SKDTVSWNSIISGLDHNERFEEAVACFHTMRR-NGMVPSKFSVISTLSSCA 467



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 195/432 (45%), Gaps = 62/432 (14%)

Query: 1   PNEYVLFHLLRASSDLGWD--TYCQQLHCYILKSGFLSNVFVSTALMGFYRKIN-SLADA 57
           PN Y +   LRA  +LG +      ++H  I KS + S++ +S  LM  Y   + S+ DA
Sbjct: 138 PNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDA 197

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS----EIYADAYSFTS---- 109
            ++F EI   +  SWNS+IS Y + G    A  LF  ++R         + Y+F S    
Sbjct: 198 RRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTV 257

Query: 110 --ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
             +L  CG    L L   + ++I K S  + + + + L+  + + G ++ A  +F +M D
Sbjct: 258 ACSLVDCG----LTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDD 313

Query: 168 KDIISWNSVIAASARNGNLELA---FGFLHRLPNPDTISY-------------------- 204
           ++ ++ N ++   AR    E A   F  +  L   +  SY                    
Sbjct: 314 RNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINASSYAVLLSAFTEFSNLKEGKRKG 373

Query: 205 --------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
                               N ++N  A+   I++A  I   MPS ++ SWNSI++G  +
Sbjct: 374 QEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDH 433

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV 304
             R  EA+  F  M+   +   +++  + LS  A L  +  G  IH   IK GLD  + V
Sbjct: 434 NERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSV 493

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN-GDLTKVIELFEQLKTVR 363
           ++ALL +Y++   +E    +F  +   + V+WN+ I   A +   + + I+ F ++    
Sbjct: 494 SNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQA- 552

Query: 364 DLQPDSVTFLNV 375
             +P+ VTF+N+
Sbjct: 553 GWKPNRVTFINI 564



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 182/421 (43%), Gaps = 77/421 (18%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++ +   L + + LGW    QQ+H   +K G   +V VS AL+  Y + + + +  K+
Sbjct: 454 PSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKV 513

Query: 61  FVEIPQPSVVSWNSLISGYVQS-GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F  +P+   VSWNS I     S     +A+  F+E+ ++    +  +F + L+A   L  
Sbjct: 514 FFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSL 573

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIA 178
           L+LG  IH+ I+K+S+     I N L+  YGKC  +ED   +F  M + +D +SWN++I+
Sbjct: 574 LELGRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMIS 633

Query: 179 ASARNGNLELAFGFL-------HRLPN--------------------------------P 199
               NG L  A G +        RL +                                 
Sbjct: 634 GYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEA 693

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           + +  + +++  A+ G I+ A      MP  N  SWNS+++GY       +AL LF +M+
Sbjct: 694 EVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMK 753

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV- 318
                 D  TF  +LS  +           H  ++ +G +            +   G+V 
Sbjct: 754 QHGQLPDHVTFVGVLSACS-----------HVGLVDEGFEH-----------FKSMGEVY 791

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           E+A  +    C         M+    R GD+ K+ E  + +     + P+++ +  +L A
Sbjct: 792 ELAPRIEHFSC---------MVDLLGRAGDVKKLEEFIKTMP----MNPNALIWRTILGA 838

Query: 379 C 379
           C
Sbjct: 839 C 839



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 7/211 (3%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           D    N ++N   + G++  A  +   MP  N  SW+ +++GY       EA  LF  + 
Sbjct: 73  DVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGII 132

Query: 260 SKDVPMDEYTFSTMLSGIA--GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC-G 316
           S  +  + Y   + L      G + L  GM IH  + K    + +V+++ L+ MYS C  
Sbjct: 133 SAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSA 192

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK---TVRDLQPDSVTFL 373
            ++ A  +F  +  K   +WN++I+ Y R GD     +LF  ++   T  + +P+  TF 
Sbjct: 193 SIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFC 252

Query: 374 N-VLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           + V  ACS  D     + +    + K   +K
Sbjct: 253 SLVTVACSLVDCGLTLLEQMLARIEKSSFVK 283



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 108/226 (47%), Gaps = 9/226 (3%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +++ L  +L A + +       ++H   +++   + V V +AL+  Y K   +  A + F
Sbjct: 659 DDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFF 718

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +P  ++ SWNS+ISGY + G   KAL LF ++++     D  +F   L+AC  +G + 
Sbjct: 719 ELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVD 778

Query: 122 LGMAIHSKIVK--YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
            G   H K +   Y L   +   +C++D+ G+ G V+        M ++ + + W +++ 
Sbjct: 779 EGFE-HFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTILG 837

Query: 179 ASAR--NGNLEL---AFGFLHRLPNPDTISYNEVINGIAQFGDIED 219
           A  R  + N EL   A   L  L   + ++Y  + N  A  G  ED
Sbjct: 838 ACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWED 883


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  284 bits (726), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 171/553 (30%), Positives = 285/553 (51%), Gaps = 41/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      +L A S      + +++H  ++ +GF+S+  + TAL+  Y K  S+ DA ++
Sbjct: 156 PSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQV 215

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    V ++N ++ GY +SG + KA  LF  +++  +  +  SF S L  C    +L
Sbjct: 216 FDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEAL 275

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G A+H++ +   L   + +A  LI MY  CGS+E A  VF  M  +D++SW  +I   
Sbjct: 276 AWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGY 335

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVING------------------IAQFGD-- 216
           A NGN+E AFG    +      PD I+Y  ++N                   IA FG   
Sbjct: 336 AENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDL 395

Query: 217 ---------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                          I+DA  +  +MP  +  SW++++  YV      EA   F  M+  
Sbjct: 396 LVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRS 455

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           ++  D  T+  +L+    L AL  GM I++  IK  L + + + +AL+ M +K G VE A
Sbjct: 456 NIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERA 515

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F ++ R++++TWNAMI GY+ +G+  + + LF+++   R  +P+SVTF+ VL+ACS 
Sbjct: 516 RYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKER-FRPNSVTFVGVLSACSR 574

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
                D+   +F  + +  GI PTV+    M+ L+G+ GE+  A+ +I+ +       +W
Sbjct: 575 AGF-VDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIW 633

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            +LL A     +LDVA  +A   + ++     VYV L ++Y + G W+  + +R  M  R
Sbjct: 634 SSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESR 693

Query: 502 GLRKEAGCSWIEV 514
           G+RKE GC+WIEV
Sbjct: 694 GIRKEQGCTWIEV 706



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 194/398 (48%), Gaps = 40/398 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+  +I++ G   N++    L+  Y    ++ +A ++F  +   +VV+WN+LI+GY Q 
Sbjct: 77  KQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQV 136

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G  ++A  LF ++    +     +F S L AC     L  G  +H+++V         I 
Sbjct: 137 GHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIG 196

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
             L+ MY K GS++DA  VF  +  +D+ ++N ++   A++G+ E AF   +R+      
Sbjct: 197 TALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLK 256

Query: 199 PDTISYNEVINGI-----------------------------------AQFGDIEDAIMI 223
           P+ IS+  +++G                                       G IE A  +
Sbjct: 257 PNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRV 316

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
             +M   +  SW  ++ GY     + +A  LF  MQ + +  D  T+  +++  A  + L
Sbjct: 317 FDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANL 376

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
                IHS V   G    ++V++AL+ MY+KCG ++ A  +F ++ R+++V+W+AMI  Y
Sbjct: 377 NHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAY 436

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             NG  T+  E F  +K   +++PD VT++N+L AC H
Sbjct: 437 VENGYGTEAFETFHLMKR-SNIEPDGVTYINLLNACGH 473



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 155/319 (48%), Gaps = 40/319 (12%)

Query: 101 YADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIG 160
           + D+ ++      C +L    LG  +   I++   +  +   N LI +Y  CG+V +A  
Sbjct: 54  HIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQ 113

Query: 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVING------ 210
           +F  + +K +++WN++IA  A+ G+++ AF    ++ +    P  I++  V++       
Sbjct: 114 IFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAG 173

Query: 211 ----------------IAQF-------------GDIEDAIMILSSMPSPNSSSWNSILTG 241
                           ++ F             G ++DA  +   +   + S++N ++ G
Sbjct: 174 LNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGG 233

Query: 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
           Y       +A  LF  MQ   +  ++ +F ++L G     AL WG  +H+  +  GL   
Sbjct: 234 YAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDD 293

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
           I VA++L+ MY+ CG +E A  +F ++  +++V+W  MI GYA NG++     LF  ++ 
Sbjct: 294 IRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQE 353

Query: 362 VRDLQPDSVTFLNVLAACS 380
              +QPD +T+++++ AC+
Sbjct: 354 -EGIQPDRITYMHIMNACA 371



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 8/155 (5%)

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
            +P P S+ + S  T  V  N V   L   GE  +    +D  T+  +      L     
Sbjct: 23  QLPVP-SARFRSTFTRRVGANDV---LQRLGEGGNH---IDSRTYVKLFQRCTELRDAAL 75

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  +   +I+ G   +I   + L+ +YS CG V  A  +F S+  K +VTWNA+I GYA+
Sbjct: 76  GKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQ 135

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            G + +   LF Q+     L+P  +TFL+VL ACS
Sbjct: 136 VGHVKEAFALFRQMVD-EGLEPSIITFLSVLDACS 169


>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 535

 Score =  284 bits (726), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 163/500 (32%), Positives = 267/500 (53%), Gaps = 8/500 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYR---KINSLADAHKMFVEIPQPSVVSWNSLISGY 79
           QQ H ++LK+G   + F ++ L+ F     +  +++ AH +   I  P+  + NS+I  Y
Sbjct: 26  QQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIESPNGFTHNSVIRAY 85

Query: 80  VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
             S     AL +F E+    ++ D YSFT  L AC      + G  IH   +K  L   V
Sbjct: 86  ANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMKSDLVTDV 145

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            + N LI++YG+ G  E A  V   M  +D +SWNS+++A    G +E A      +   
Sbjct: 146 FVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEMEER 205

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM- 258
           +  S+N +I+G A  G +++A  +  SMP  +  SWN+++T Y +     E L +F  M 
Sbjct: 206 NVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMML 265

Query: 259 -QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
             S + P D +T   +LS  A L +L+ G  +H  + K G++    VA+AL+DMYSKCG+
Sbjct: 266 DDSAERP-DGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGK 324

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           ++ A  +FR   ++++ TWN++ITG + +G     +E+F ++      +P+ +TF+ VL+
Sbjct: 325 IDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEM-VYEGFKPNGITFIGVLS 383

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           AC+H  +  D+  + FE M   YGI+PT+EH   M+ L+G+ G+   A+ ++ E+     
Sbjct: 384 ACNHVGL-LDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADEA 442

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497
            ++  +LL A      L+ A   A  +++        YV + NLY SHG WD A  +R  
Sbjct: 443 SILLESLLGACKRFGKLEQAERIANRLLESNPRESSGYVQMSNLYASHGRWDEAMEVRGK 502

Query: 498 MRERGLRKEAGCSWIEVENV 517
           MR   ++K  GCS IEV+ V
Sbjct: 503 MRAERVKKNPGCSMIEVDGV 522



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 113/232 (48%), Gaps = 5/232 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + L ++L A + LG  +  + +H YI K G     FV+TAL+  Y K   +  A ++
Sbjct: 272 PDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKALEV 331

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +  +  V +WNS+I+G    G  + AL +F E+       +  +F   L+AC  +G L
Sbjct: 332 FRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGLL 391

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
                +   +   Y +E  +    C++D+ G+ G  E+A  +  E+  D+  I   S++ 
Sbjct: 392 DQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADEASILLESLLG 451

Query: 179 ASARNGNLELAFGFLHRL--PNP-DTISYNEVINGIAQFGDIEDAIMILSSM 227
           A  R G LE A    +RL   NP ++  Y ++ N  A  G  ++A+ +   M
Sbjct: 452 ACKRFGKLEQAERIANRLLESNPRESSGYVQMSNLYASHGRWDEAMEVRGKM 503


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 156/533 (29%), Positives = 294/533 (55%), Gaps = 44/533 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++HC++ K GF  +VFV+ +L+  Y +   +  A  +F ++P   + SWN++ISG +Q+
Sbjct: 192 RKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQN 251

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   +AL++  E+    I  D+ +  S L  C QLG +     IH  ++K+ LE  + ++
Sbjct: 252 GNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVS 311

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
           N LI+MY K G++ DA  VF +M  +D++SWNS+IAA  +N +   A GF  ++      
Sbjct: 312 NALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLE 371

Query: 199 PDTISY------------------------------------NEVINGIAQFGDIEDAIM 222
           PD ++                                     N V++  A+ G I+ A  
Sbjct: 372 PDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHK 431

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS-KDVPMDEYTFSTMLSGIAGLS 281
           + + +P  +  SWN++++GY       EA+ ++  M+  +++ +++ T+ ++L+  A + 
Sbjct: 432 VFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVG 491

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL  GM IH  +IK  L   + V + L+D+Y KCG++  A  +F  + R++ V WNA+I+
Sbjct: 492 ALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIIS 551

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            +  +G   K ++LF +++    ++PD VTF+++L+ACSH+ +  +   ++F  + ++YG
Sbjct: 552 CHGIHGHGEKALKLFREMQD-EGVKPDHVTFISLLSACSHSGLVDE--GKWFFHLMQEYG 608

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           IKP+++H   M+ L+G+ G +  A   I+++       +W ALL A     ++++ + ++
Sbjct: 609 IKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFAS 668

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
             + +++ ++   YV+L N+Y + G W+    +R+  RERGL+K  G S IEV
Sbjct: 669 DRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEV 721



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 136/532 (25%), Positives = 251/532 (47%), Gaps = 51/532 (9%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           ++LH  ++ SG + + F+S  L+  Y  +  ++ +   F +I +  V +WNS+IS YV++
Sbjct: 93  KRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRN 152

Query: 83  GKYRKALNLFVELER-SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           G +R+A++ F +L   ++  AD Y+F   L AC  L     G  IH  + K   +  V +
Sbjct: 153 GHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDVFV 209

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP---- 197
           A  LI MY + G V  A  +F +M  +D+ SWN++I+   +NGN   A   L  +     
Sbjct: 210 AASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 269

Query: 198 NPDTISY-----------------------------------NEVINGIAQFGDIEDAIM 222
           N D+++                                    N +IN  A+FG++ DA  
Sbjct: 270 NMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQK 329

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           +   M   +  SWNSI+  Y   +    A   F +MQ   +  D  T  ++ S  A    
Sbjct: 330 VFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRD 389

Query: 283 LTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
                 +H  ++++G L  ++V+ +A++DMY+K G ++ A  +F  +  K++V+WN +I+
Sbjct: 390 YKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLIS 449

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GY +NG  ++ IE++  ++  R+++ +  T++++LAA +H       +  +   +  +  
Sbjct: 450 GYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLH 509

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           +   V  C  +I L G+ G +  A  +  ++   S  V W A++S  G     + A    
Sbjct: 510 LDVFVGTC--LIDLYGKCGRLVDAMCLFYQVPRES-SVPWNAIISCHGIHGHGEKALKLF 566

Query: 462 AEVIKLEGDSDYV-YVMLCNLYTSHGNWDVASVMRNFMRERGLR---KEAGC 509
            E+       D+V ++ L +  +  G  D      + M+E G++   K  GC
Sbjct: 567 REMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGC 618



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 167/383 (43%), Gaps = 42/383 (10%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           +L   + LG  +    +H Y++K G    +FVS AL+  Y K  +L DA K+F ++    
Sbjct: 279 ILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRD 338

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           VVSWNS+I+ Y Q+     A   F +++ + +  D  +  S  +   Q    +   ++H 
Sbjct: 339 VVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHG 398

Query: 129 KIVKYS-LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
            I++   L   VVI N ++DMY K G ++ A  VF  +  KD++SWN++I+   +NG   
Sbjct: 399 FIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLAS 458

Query: 188 LAFGFLHRLPNPDTISYNE----------------------------------------V 207
            A      +     I  N+                                        +
Sbjct: 459 EAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCL 518

Query: 208 INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
           I+   + G + DA+ +   +P  +S  WN+I++ +       +AL LF EMQ + V  D 
Sbjct: 519 IDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDH 578

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
            TF ++LS  +    +  G      + + G+  S+     ++D+  + G +E+A    + 
Sbjct: 579 VTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKD 638

Query: 328 L-CRKNLVTWNAMITGYARNGDL 349
           +    +   W A++     +G++
Sbjct: 639 MPLHPDASIWGALLGACRIHGNI 661



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 149/313 (47%), Gaps = 41/313 (13%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
           F S   +C +     L   +H+ +V     +   I+  L+++Y   G V  + G F ++ 
Sbjct: 79  FNSLFDSCTKT---LLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQ 135

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLP-----NPDTISYNEV-------------- 207
            KD+ +WNS+I+A  RNG+   A    ++L        D  ++  V              
Sbjct: 136 RKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDGRKIH 195

Query: 208 ------------------INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
                             I+  ++FG +  A  +   MP  +  SWN++++G +      
Sbjct: 196 CWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAA 255

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
           +AL +  EM+ + + MD  T +++L   A L  ++   LIH  VIK GL+  + V++AL+
Sbjct: 256 QALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALI 315

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
           +MY+K G +  A  +F+ +  +++V+WN++I  Y +N D       F +++ +  L+PD 
Sbjct: 316 NMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQ-LNGLEPDL 374

Query: 370 VTFLNVLAACSHT 382
           +T +++ +  + +
Sbjct: 375 LTLVSLASIAAQS 387



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 96/189 (50%), Gaps = 1/189 (0%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N+     +L A + +G      ++H +++K+    +VFV T L+  Y K   L DA  +F
Sbjct: 476 NQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLF 535

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            ++P+ S V WN++IS +   G   KAL LF E++   +  D  +F S L+AC   G + 
Sbjct: 536 YQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVD 595

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAAS 180
            G      + +Y ++  +    C++D+ G+ G +E A     +M +  D   W +++ A 
Sbjct: 596 EGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGAC 655

Query: 181 ARNGNLELA 189
             +GN+EL 
Sbjct: 656 RIHGNIELG 664


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 163/554 (29%), Positives = 285/554 (51%), Gaps = 41/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y +  +LRA   LG       +H  I K G   +V V+  L+  Y K N L D  ++
Sbjct: 273 PDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRI 332

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++     VSWN++I GY Q G Y +++ LF+E+  ++   D  + TS L ACG LG L
Sbjct: 333 FDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV-NQFKPDLLTITSILQACGHLGDL 391

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H  ++    E     +N LI+MY KCG++  +  VF  M  KD +SWNS+I   
Sbjct: 392 EFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVY 451

Query: 181 ARNGNLELA---FGFLHRLPNPDTISY--------------------------------- 204
            +NG+ + A   F  +     PD+++Y                                 
Sbjct: 452 IQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIV 511

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +++  A+ G++ D++ +  +M + +  +WN+I+   V+       L +   M+++ 
Sbjct: 512 VSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEG 571

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V  D  T  ++L   + L+A   G  IH C+ K GL++ + V + L++MYSKCG +  + 
Sbjct: 572 VTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSF 631

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F+ +  K++VTW A+I+     G+  K +  F +++    + PD V F+ ++ ACSH+
Sbjct: 632 QVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAA-GIVPDHVAFVAIIFACSHS 690

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  + ++ YF  M KDY I+P +EH   ++ L+ +   + +A+  I  +       +W 
Sbjct: 691 GLVEEGLN-YFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWG 749

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
           ALLSA     D ++A+  +  +I+L  D    YV++ N+Y + G WD    +R  ++ RG
Sbjct: 750 ALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARG 809

Query: 503 LRKEAGCSWIEVEN 516
           L+K+ GCSW+E++N
Sbjct: 810 LKKDPGCSWMEIQN 823



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 234/487 (48%), Gaps = 43/487 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    ++ A + L      + +H  +L  GF S++++  AL+  Y + N L  A K+
Sbjct: 172 PDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKV 231

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P   VVSWNSLISGY  +G + +AL ++       +  D+Y+ +S L ACG LGS+
Sbjct: 232 FEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSV 291

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH  I K  +++ V++ N L+ MY K   + D   +F +M+ +D +SWN++I   
Sbjct: 292 EEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGY 351

Query: 181 ARNGNLELAFGFLHRLPN---PDTISYNEVINGIAQFGDIE------DAIM--------- 222
           ++ G  E +      + N   PD ++   ++      GD+E      D ++         
Sbjct: 352 SQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTT 411

Query: 223 --------------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                               + S M   +S SWNS++  Y+      EA+ LF +M   D
Sbjct: 412 ASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTD 470

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V  D  T+  +LS    L  L  G  +H  + K G +++IVV++ L+DMY+KCG++  + 
Sbjct: 471 VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSL 530

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F ++  ++++TWN +I     + D    + +  +++T   + PD  T L++L  CS  
Sbjct: 531 KVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRT-EGVTPDMATMLSILPVCSL- 588

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +   +  +         G++  V     +I +  + G + R    + +L      V W 
Sbjct: 589 -LAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSL-RNSFQVFKLMKTKDVVTWT 646

Query: 443 ALLSASG 449
           AL+SA G
Sbjct: 647 ALISACG 653



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 191/407 (46%), Gaps = 43/407 (10%)

Query: 11  RASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF-VEIPQPSV 69
           RA +     T   +LH  I+  G   +V  S  L+  Y        +  +F +  P  +V
Sbjct: 80  RALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNV 139

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
             WNS+I     +G + +AL+L+ E +R  +  D Y+F S + AC  L   ++  +IH +
Sbjct: 140 YXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDR 199

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
           ++       + I N LIDMY +   ++ A  VF EM  +D++SWNS+I+    NG    A
Sbjct: 200 VLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEA 259

Query: 190 FGFLHRLPN----PDTISYNEVINGIAQFGDIE--------------------------- 218
               +R  N    PD+ + + V+      G +E                           
Sbjct: 260 LEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSM 319

Query: 219 --------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
                   D   I   M   ++ SWN+++ GY       E++ LF EM ++  P D  T 
Sbjct: 320 YCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKP-DLLTI 378

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
           +++L     L  L +G  +H  +I  G +     ++ L++MY+KCG +  +  +F  +  
Sbjct: 379 TSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKC 438

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           K+ V+WN+MI  Y +NG   + ++LF+ +KT  D++PDSVT++ +L+
Sbjct: 439 KDSVSWNSMINVYIQNGSFDEAMKLFKMMKT--DVKPDSVTYVMLLS 483



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 2/112 (1%)

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR-SL 328
           FS++   +A  +  T    +HS +I  GL  S++ ++ L+  Y+       + S+FR + 
Sbjct: 75  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 134

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
              N+  WN++I     NG  ++ + L+ + + +R LQPD+ TF +V+ AC+
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIR-LQPDTYTFPSVINACA 185


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 159/537 (29%), Positives = 289/537 (53%), Gaps = 43/537 (8%)

Query: 20  TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79
           ++ +Q+HC  +K GF  + +V T+L+  Y K   +  A K+F E+P   +  WN+LIS Y
Sbjct: 258 SFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAY 317

Query: 80  VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
           V +G    AL ++ +++   + +D+++  + L +    G   LG  IH++IVK  L+  +
Sbjct: 318 VGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSI 377

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL--- 196
            I + L+ MY K G    A  +F  M ++D+++W SVI+   +N   + A  F   +   
Sbjct: 378 TIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEAD 437

Query: 197 ---PNPDTIS---------------------------------YNEVINGIAQFGDIEDA 220
              P+ D ++                                  + +++  ++FG  E A
Sbjct: 438 LVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERA 497

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPE-ALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
             I S MP  N  +WNSI++ Y  RN +P+ +++LF ++   D+  D  +F+++L+ I+ 
Sbjct: 498 GNIFSDMPLKNLVAWNSIISCYC-RNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISS 556

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
           ++AL  G  +H  +++  +   + V + L+DMY KCG ++ A  +F  +  KNLV WN+M
Sbjct: 557 VAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSM 616

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKD 399
           I GY  +G+ +K IELF+++++   ++PD VTFL++L++C+H+ +  ++    FE M   
Sbjct: 617 IGGYGSHGECSKAIELFDEMRS-SGIKPDDVTFLSLLSSCNHSGL-IEEGLHLFEMMKMK 674

Query: 400 YGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARI 459
           +GI+P +EH  +++ L G+ G +  A   ++ +       +W +LL +     +L++  +
Sbjct: 675 FGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSLLCSCKIHLNLELGEM 734

Query: 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            A +++ +E      YV L NLY     WD  + +R  M+E+GL+K  GCSWIEV N
Sbjct: 735 VANKLLNMEPSKGSNYVQLLNLYGEAELWDRTANLRASMKEKGLKKTPGCSWIEVRN 791



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 198/420 (47%), Gaps = 72/420 (17%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP- 67
           LL+A + L    Y + +H  I+ +G  S+ +++++L+  Y K  +  DA K+F ++P+  
Sbjct: 59  LLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDAVKVFDQLPKSG 118

Query: 68  ----SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
                V  WNS+I GY + G+  + +  F  ++ S                      + G
Sbjct: 119 VSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSS--------------------GYKEG 158

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIAASAR 182
             IHS IV+  L     +   LID Y KCG   +A  +F ++ D+ +I++WN +I     
Sbjct: 159 KQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGE 218

Query: 183 NGNLE--LAFGFLHRLPNPDTIS--YNEVINGIAQ-----FGD----------------- 216
           NG  E  L +  L +  N   +S  +   ++   Q     FG                  
Sbjct: 219 NGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYV 278

Query: 217 -------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
                        IE A  + + +P      WN++++ YV      +AL ++ +M+   V
Sbjct: 279 HTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTV 338

Query: 264 PMDEYTFSTML--SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
             D +T   +L  S +AGL  L  G LIH+ ++K+ L +SI + SALL MYSK G    A
Sbjct: 339 LSDSFTILNVLTSSSMAGLYDL--GRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYA 396

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL-QPDSVTFLNVLAACS 380
           +S+F ++  +++V W ++I+G+ +N    + ++ F  ++   DL +PDS    ++++AC+
Sbjct: 397 NSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEA--DLVKPDSDIMASIISACT 454



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 177/367 (48%), Gaps = 40/367 (10%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + + + ++L +SS  G     + +H  I+K    S++ + +AL+  Y K      A+ +F
Sbjct: 341 DSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIF 400

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             + +  VV+W S+ISG+ Q+ KY++AL+ F  +E   +  D+    S ++AC  L  + 
Sbjct: 401 STMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVD 460

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           LG  IH  ++K  L+  V +A+ L+DMY K G  E A  +F +M  K++++WNS+I+   
Sbjct: 461 LGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYC 520

Query: 182 RNGNLELAFG-FLHRLPN---PDTISYNEVINGIA------------------------- 212
           RN   +L+   F   L N   PD++S+  V+  I+                         
Sbjct: 521 RNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQ 580

Query: 213 ----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                     + G ++ A  I   +   N  +WNS++ GY +     +A+ LF EM+S  
Sbjct: 581 VENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSG 640

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           +  D+ TF ++LS       +  G+ L     +K G++  +     ++D+Y + G +  A
Sbjct: 641 IKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDA 700

Query: 322 DSMFRSL 328
            S  +++
Sbjct: 701 YSFVKNM 707



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 153/330 (46%), Gaps = 29/330 (8%)

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135
           I   VQ  +Y +AL L+    +S +Y   +++ S L AC  L +LQ G  IHS I+   L
Sbjct: 28  IKSLVQQRQYIEALKLYT---KSPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGL 84

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-----DIISWNSVIAASARNGNLE--- 187
                I + LI++Y KCG+  DA+ VF ++        D+  WNS+I    R G LE   
Sbjct: 85  HSDQYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGM 144

Query: 188 LAFG----------------FLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS-P 230
           + FG                 +  + N D      +I+   + G   +A  +   +    
Sbjct: 145 VQFGRMQSSGYKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRS 204

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
           N  +WN ++ G+        +L  +   ++++V +   +F+  LS       +++G  +H
Sbjct: 205 NIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVH 264

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
              IK G +    V ++LL MY KC  +E A+ +F  +  K +  WNA+I+ Y  NG   
Sbjct: 265 CDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAY 324

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             + +++Q+K    L  DS T LNVL + S
Sbjct: 325 DALRIYKQMKLCTVLS-DSFTILNVLTSSS 353


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 163/554 (29%), Positives = 284/554 (51%), Gaps = 41/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y +  +LRA   LG       +H  I K G   +V V+  L+  Y K N L D  ++
Sbjct: 214 PDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRI 273

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++     VSWN++I GY Q G Y +++ LF+E+  ++   D  + TS L ACG LG L
Sbjct: 274 FDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV-NQFKPDLLTITSILQACGHLGDL 332

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H  ++    E     +N LI+MY KCG++  +  VF  M  KD +SWNS+I   
Sbjct: 333 EFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVY 392

Query: 181 ARNGNLELA---FGFLHRLPNPDTISY--------------------------------- 204
            +NG+ + A   F  +     PD+++Y                                 
Sbjct: 393 IQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIV 452

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +++  A+ G++ D++ +  +M + +  +WN+I+   V+       L +   M+++ 
Sbjct: 453 VSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEG 512

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V  D  T  ++L   + L+A   G  IH C+ K GL++ + V + L++MYSKCG +  + 
Sbjct: 513 VTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSF 572

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F+ +  K++VTW A+I+     G+  K +  F +++    + PD V F+ ++ ACSH+
Sbjct: 573 QVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAA-GIVPDHVAFVAIIFACSHS 631

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  + ++ YF  M KDY I+P +EH   ++ L+ +   + +A+  I  +       +W 
Sbjct: 632 GLVEEGLN-YFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWG 690

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
           ALLSA     D ++A   +  +I+L  D    YV++ N+Y + G WD    +R  ++ RG
Sbjct: 691 ALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARG 750

Query: 503 LRKEAGCSWIEVEN 516
           L+K+ GCSW+E++N
Sbjct: 751 LKKDPGCSWMEIQN 764



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 234/487 (48%), Gaps = 43/487 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    ++ A + L      + +H  +L  GF S++++  AL+  Y + N L  A K+
Sbjct: 113 PDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKV 172

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P   VVSWNSLISGY  +G + +AL ++       +  D+Y+ +S L ACG LGS+
Sbjct: 173 FEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSV 232

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH  I K  +++ V++ N L+ MY K   + D   +F +M+ +D +SWN++I   
Sbjct: 233 EEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGY 292

Query: 181 ARNGNLELAFGFLHRLPN---PDTISYNEVINGIAQFGDIE------DAIM--------- 222
           ++ G  E +      + N   PD ++   ++      GD+E      D ++         
Sbjct: 293 SQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTT 352

Query: 223 --------------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                               + S M   +S SWNS++  Y+      EA+ LF +M   D
Sbjct: 353 ASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTD 411

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V  D  T+  +LS    L  L  G  +H  + K G +++IVV++ L+DMY+KCG++  + 
Sbjct: 412 VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSL 471

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F ++  ++++TWN +I     + D    + +  +++T   + PD  T L++L  CS  
Sbjct: 472 KVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRT-EGVTPDMATMLSILPVCSL- 529

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +   +  +         G++  V     +I +  + G + R    + +L      V W 
Sbjct: 530 -LAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSL-RNSFQVFKLMKTKDVVTWT 587

Query: 443 ALLSASG 449
           AL+SA G
Sbjct: 588 ALISACG 594



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 191/407 (46%), Gaps = 43/407 (10%)

Query: 11  RASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF-VEIPQPSV 69
           RA +     T   +LH  I+  G   +V  S  L+  Y        +  +F +  P  +V
Sbjct: 21  RALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNV 80

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
             WNS+I     +G + +AL+L+ E +R  +  D Y+F S + AC  L   ++  +IH +
Sbjct: 81  YLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDR 140

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
           ++       + I N LIDMY +   ++ A  VF EM  +D++SWNS+I+    NG    A
Sbjct: 141 VLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEA 200

Query: 190 FGFLHRLPN----PDTISYNEVINGIAQFGDIE--------------------------- 218
               +R  N    PD+ + + V+      G +E                           
Sbjct: 201 LEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSM 260

Query: 219 --------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
                   D   I   M   ++ SWN+++ GY       E++ LF EM ++  P D  T 
Sbjct: 261 YCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKP-DLLTI 319

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
           +++L     L  L +G  +H  +I  G +     ++ L++MY+KCG +  +  +F  +  
Sbjct: 320 TSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKC 379

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           K+ V+WN+MI  Y +NG   + ++LF+ +KT  D++PDSVT++ +L+
Sbjct: 380 KDSVSWNSMINVYIQNGSFDEAMKLFKMMKT--DVKPDSVTYVMLLS 424



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 91/182 (50%), Gaps = 5/182 (2%)

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR-SL 328
           FS++   +A  +  T    +HS +I  GL  S++ ++ L+  Y+       + S+FR + 
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 75

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDK 388
              N+  WN++I     NG  ++ + L+ + + +R LQPD+ TF +V+ AC+   + F+ 
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIR-LQPDTYTFPSVINACAGL-LDFE- 132

Query: 389 VSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSAS 448
           +++       D G    +    ++I +  +  ++ +A+++  E+      V W +L+S  
Sbjct: 133 MAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDV-VSWNSLISGY 191

Query: 449 GA 450
            A
Sbjct: 192 NA 193


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 167/555 (30%), Positives = 291/555 (52%), Gaps = 42/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ YV+  +L A S L +    +Q+H Y+L+ G   +V V   L+ FY K N +    K+
Sbjct: 136 PDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKL 195

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++   +++SW ++ISGY+Q+    +A+ LF E+ R     D ++ TS L +CG L +L
Sbjct: 196 FDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEAL 255

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H+  +K +LE    + N LIDMY K   + DA  VF  M ++++IS+N++I   
Sbjct: 256 EQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGY 315

Query: 181 ARNGNLELAFGFLH----RLPNPDTISY---------------NEVINGI---------- 211
           +    L  A    H    RL  P  +++               ++ I+G+          
Sbjct: 316 SSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDL 375

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     ++   ++DA  +   M   +   WN++  GY       EAL L+  +Q  
Sbjct: 376 FAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFS 435

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
               +E+TF+ +++  + L++L  G   H+ ++K GLD    V +AL+DMY+KCG +E A
Sbjct: 436 RQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEA 495

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             MF S   +++V WN+MI+ +A++G+  + + +F ++     +QP+ VTF+ VL+ACSH
Sbjct: 496 RKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMK-EGIQPNYVTFVAVLSACSH 554

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
                D ++ +F SM   +GIKP  EH   ++ L+G+ G+++ A+  I ++      +VW
Sbjct: 555 AGXVEDGLN-HFNSMP-GFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVW 612

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R+LLSA     ++++ + +A   I  +      Y++L N++ S G W     +R+ M   
Sbjct: 613 RSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSS 672

Query: 502 GLRKEAGCSWIEVEN 516
            + KE G SWIEV N
Sbjct: 673 EVVKEPGRSWIEVNN 687



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/421 (31%), Positives = 219/421 (52%), Gaps = 42/421 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+VL  ++RA + LG      QLH ++++SGF  +V+V T+L+ FY K   +  A  +
Sbjct: 35  PNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLV 94

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ + + V+W ++I+GY + G+   +L LF ++  + +  D Y  +S L+AC  L  L
Sbjct: 95  FDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFL 154

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH+ +++   E  V + N LID Y KC  V+    +F +M+ K+IISW ++I+  
Sbjct: 155 EGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGY 214

Query: 181 ARNG----NLELAFGFLHRLP-NPD--------------------------TISYNEVIN 209
            +N      ++L FG ++RL   PD                          TI  N   N
Sbjct: 215 MQNSFDWEAMKL-FGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESN 273

Query: 210 GIAQFGDIE---------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
              + G I+         DA  +   M   N  S+N+++ GY ++ ++ EAL LF EM+ 
Sbjct: 274 EFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRV 333

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +  P    TF ++L   A L AL     IH  +IK G+   +   SAL+D+YSKC  V+ 
Sbjct: 334 RLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKD 393

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  +  K++V WNAM  GY ++ +  + ++L+  L+  R  +P+  TF  ++ A S
Sbjct: 394 ARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQ-KPNEFTFAALITAAS 452

Query: 381 H 381
           +
Sbjct: 453 N 453



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 160/335 (47%), Gaps = 41/335 (12%)

Query: 83  GKYRKALNLFVELER-SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           G   +AL +FV+L+R S  + + +   S + AC QLG ++ G  +H  +V+   ++ V +
Sbjct: 15  GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 74

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN---------------- 185
              LID Y K G +E A  VF ++++K  ++W ++IA   + G                 
Sbjct: 75  GTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNV 134

Query: 186 ----------------LELAFG-------FLHRLPNPDTISYNEVINGIAQFGDIEDAIM 222
                           LE   G        L R    D    N +I+   +   ++    
Sbjct: 135 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 194

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           +   M   N  SW ++++GY+  +   EA+ LFGEM       D +  +++L+    L A
Sbjct: 195 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEA 254

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G  +H+  IK  L+++  V + L+DMY+K   +  A  +F  +  +N++++NAMI G
Sbjct: 255 LEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEG 314

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           Y+    L++ +ELF +++ VR   P  +TF+++L 
Sbjct: 315 YSSQEKLSEALELFHEMR-VRLFPPSLLTFVSLLG 348


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 168/561 (29%), Positives = 300/561 (53%), Gaps = 47/561 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL-SNVFVSTALMG-FYRKINSLADAH 58
           PNEY      RA S   + +    +  +++K+G+L S+V V   L+  F +    L  A 
Sbjct: 166 PNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAF 225

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           K+F ++P+ + V+W  +I+  +Q G   +A++LF+++  S    D ++ +  ++AC  + 
Sbjct: 226 KVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANME 285

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC---GSVEDAIGVFGEMIDKDIISWNS 175
            L LG  +HS+ +++ L     +  CLI+MY KC   GS+  A  +F +++D ++ SW +
Sbjct: 286 LLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTA 345

Query: 176 VIAASARNGN-----LELAFGFL--HRLPNPDTIS------------------------- 203
           +I    + G      L+L  G +  H +PN  T S                         
Sbjct: 346 MITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL 405

Query: 204 --------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
                    N +I+  A+ G I+DA      +   N  S+N+++  Y       EAL LF
Sbjct: 406 GFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELF 465

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
            E++ + +    +TF+++LSG A +  +  G  IH+ VIK GL  +  V +AL+ MYS+C
Sbjct: 466 NEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRC 525

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G +E A  +F  +  +N+++W ++ITG+A++G  T+ +ELF ++     ++P+ VT++ V
Sbjct: 526 GNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLE-EGVRPNEVTYIAV 584

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L+ACSH  +  ++  ++F+SM  ++G+ P +EH   ++ ++G+ G +  A + I  + + 
Sbjct: 585 LSACSHVGL-VNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYK 643

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
           +  +VWR  L A     +L++ + +A  +I+ E      Y++L NLY S   WD  S +R
Sbjct: 644 ADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIR 703

Query: 496 NFMRERGLRKEAGCSWIEVEN 516
             M+E+ L KEAGCSW+EVEN
Sbjct: 704 KAMKEKXLIKEAGCSWVEVEN 724



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 157/364 (43%), Gaps = 50/364 (13%)

Query: 67  PSVVSWNSLISGYVQ---SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
           P+  + N L    +Q   +G+  KA++    +     + D  +++  L  C +  S  +G
Sbjct: 26  PTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIG 85

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASAR 182
             +H K+ +  L+   V  N LI +Y KCG  E A  +F  M   +D+ISW+++++  A 
Sbjct: 86  TLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFAN 145

Query: 183 NG-NLELAFGFLHRLPN---PD------------TISYNEVINGIAQF------------ 214
           N         F+  + N   P+            T  +  V + I  F            
Sbjct: 146 NNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVC 205

Query: 215 -------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                        GD+  A  +   MP  N+ +W  ++T  +      EA+ LF +M   
Sbjct: 206 VGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFS 265

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC---GQV 318
               D +T S ++S  A +  L  G  +HS  I+ GL     V   L++MY+KC   G +
Sbjct: 266 GYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSM 325

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDL-TKVIELFEQLKTVRDLQPDSVTFLNVLA 377
             A  +F  +   N+ +W AMITGY + G    + ++LF  +  +  + P+  TF + L 
Sbjct: 326 CAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGM-ILTHVIPNHFTFSSTLK 384

Query: 378 ACSH 381
           AC++
Sbjct: 385 ACAN 388



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 106/461 (22%), Positives = 200/461 (43%), Gaps = 62/461 (13%)

Query: 43  ALMGFYRKINSLADAHKMFVEI-PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           +L+  Y K      A  +F  +     ++SW++++S +  +    +AL  FV++  +  Y
Sbjct: 106 SLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYY 165

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS-LERGVVIANCLIDMYGKC-GSVEDAI 159
            + Y F +A  AC     + +G +I   ++K   L+  V +   LIDM+ K  G +  A 
Sbjct: 166 PNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAF 225

Query: 160 GVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLPNPDTISYNEVINGIAQF- 214
            VF +M +++ ++W  +I    + G     ++L    +     PD  + + VI+  A   
Sbjct: 226 KVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANME 285

Query: 215 -------------------------------------GDIEDAIMILSSMPSPNSSSWNS 237
                                                G +  A  I   +   N  SW +
Sbjct: 286 LLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTA 345

Query: 238 ILTGYVNRNRV-PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           ++TGYV +     EAL LF  M    V  + +TFS+ L   A L+AL  G  + +  +K 
Sbjct: 346 MITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL 405

Query: 297 GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
           G  +   VA++L+ MY++ G+++ A   F  L  KNL+++N +I  YA+N +  + +ELF
Sbjct: 406 GFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELF 465

Query: 357 EQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLM 416
            +++  + +   + TF ++L+  +   I      E   +     G+K     C ++I + 
Sbjct: 466 NEIED-QGMGASAFTFASLLSGAA--SIGTIGKGEQIHARVIKSGLKLNQSVCNALISMY 522

Query: 417 GQKGEVWRAQRMIREL-------------GFGSYGVVWRAL 444
            + G +  A ++  ++             GF  +G   +AL
Sbjct: 523 SRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQAL 563



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 10/224 (4%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNS-SSWNSILTGYVNRNRVPEALHLFGEM 258
           D+++ N +I+  ++ G  E A  I   M S     SW+++++ + N N    AL  F +M
Sbjct: 100 DSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDM 159

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKC-G 316
                  +EY F+      +    ++ G  I   VIK G L + + V   L+DM+ K  G
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRG 219

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            +  A  +F  +  +N VTW  MIT   + G   + I+LF  +      +PD  T   V+
Sbjct: 220 DLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDM-IFSGYEPDRFTLSGVI 278

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC--CSMIRLMGQ 418
           +AC++ ++    + +   S    +G+  T++ C  C +I +  +
Sbjct: 279 SACANMELLL--LGQQLHSQAIRHGL--TLDRCVGCCLINMYAK 318


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 158/553 (28%), Positives = 290/553 (52%), Gaps = 41/553 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +++ L  +L+  ++ G     + LH   L+SG   + F+  +L+  Y K  ++ DA K+F
Sbjct: 50  SKFTLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVF 109

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            +I  P VV+W+++I+G  Q G  ++A  LF  + R     + ++ +S ++    +G L+
Sbjct: 110 TKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLR 169

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA--- 178
            G +IH  I KY  E   +++N LI MY K   VED   VF  M + D++SWN++++   
Sbjct: 170 YGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFY 229

Query: 179 -ASARNGNLELAFGFLHRLPNPDTISYNEVINGIA-----QFGD---------------- 216
            +        + +  L     P+  ++  V+   +     +FG                 
Sbjct: 230 DSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDF 289

Query: 217 --------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                         +EDA +    + + +  SW  I++GY   ++  +A+  F +MQ + 
Sbjct: 290 VGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREG 349

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +  +EYT ++ LSG + ++ L  G  +H+  +K G    I V SAL+D+Y KCG +E A+
Sbjct: 350 IKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAE 409

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           ++F+ L  +++V+WN +I+GY+++G   K +E F  + +   + PD  TF+ VL+ACS  
Sbjct: 410 AIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLS-EGIMPDEATFIGVLSACSFM 468

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  ++  + F+SM+K YGI P++EH   M+ ++G+ G+    +  I E+    Y ++W 
Sbjct: 469 GL-VEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWE 527

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
            +L A     ++D    +A ++ ++E   D  Y++L N++ S G WD    +R  M  RG
Sbjct: 528 TVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRG 587

Query: 503 LRKEAGCSWIEVE 515
           ++KE GCSW+EV+
Sbjct: 588 IKKEPGCSWVEVD 600



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 182/364 (50%), Gaps = 40/364 (10%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A ++F  +P+ + VSWN+L++GY Q G  +K L LF +++  E     ++ ++ L  C  
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
            GSL+ G  +H+  ++   E    +   L+DMY KCG+V DA+ VF ++ + D+++W+++
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 177 IAASARNGNLELAFGFLHRL------PNPDTIS-------------YNEVING-IAQFGD 216
           I    + G+ + A    H +      PN  T+S             Y + I+G I ++G 
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGF 183

Query: 217 -------------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
                              +ED   +  +M +P+  SWN++L+G+ +         +F +
Sbjct: 184 ESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQ 243

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M  +    + +TF ++L   + L    +G  +H+ +IK   D    V +AL+DMY+K   
Sbjct: 244 MLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARC 303

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +E A   F  L  +++ +W  +I+GYA+     K ++ F Q++    ++P+  T  + L+
Sbjct: 304 LEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQR-EGIKPNEYTLASCLS 362

Query: 378 ACSH 381
            CSH
Sbjct: 363 GCSH 366



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 163/357 (45%), Gaps = 40/357 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++ L  L+  ++++G   Y Q +H  I K GF S+  VS  L+  Y K   + D +K+
Sbjct: 150 PNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKV 209

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +  P +VSWN+L+SG+  S    +   +F ++       + ++F S L +C  L   
Sbjct: 210 FEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDP 269

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H+ I+K S +    +   L+DMY K   +EDA   F  ++++DI SW  +I+  
Sbjct: 270 EFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGY 329

Query: 181 ARNGNLELAFGFLHRL------PNPDTIS-----------------YNEVINGIAQFGDI 217
           A+    E A  +  ++      PN  T++                  + V      FGDI
Sbjct: 330 AQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDI 389

Query: 218 ----------------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                           E A  I   + S +  SWN+I++GY    +  +AL  F  M S+
Sbjct: 390 FVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSE 449

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-QGLDASIVVASALLDMYSKCGQ 317
            +  DE TF  +LS  + +  +  G      + K  G++ SI   + ++D+  + G+
Sbjct: 450 GIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGK 506



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 1/165 (0%)

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           +E A  +   MP  N  SWN++L GY       + L LF +M+  +    ++T ST+L G
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            A   +L  G ++H+  ++ G +    +  +L+DMYSKCG V  A  +F  +   ++V W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           +AMITG  + G   +  ELF  ++  +  +P+  T  ++++  ++
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRR-KGARPNQFTLSSLVSTATN 164


>gi|449493401|ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g25970-like [Cucumis
           sativus]
          Length = 704

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 170/557 (30%), Positives = 280/557 (50%), Gaps = 44/557 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + Y    +L+  +  G     QQ+H  I+K G+  NV+  +AL+  Y K   L DA+  F
Sbjct: 98  DRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSF 157

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
           + I + + VSWN++I+GY Q+G    A  L   +E+     D  ++   L          
Sbjct: 158 LSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCN 217

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIAAS 180
           L   +H KI+K+ LE    + N LI  Y KCGS++DA  +F      +D+++WNS++AA 
Sbjct: 218 LTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAY 277

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVIN---------------------GIAQ-- 213
                 +LAF  L  +      PD  SY  +I+                     G  Q  
Sbjct: 278 LLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSV 337

Query: 214 --------------FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                         +G +++A+ I  S+   +  SWNSILTG        +A+  F  M+
Sbjct: 338 PISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMR 397

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           S  + +D Y+FS +L   + L+    G  IH   +K GL+++  V+S+L+ MYSKCG +E
Sbjct: 398 SAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIE 457

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A   F    + + +TWNA++ GYA++G     ++LF  L   + ++ D +TF+ VL AC
Sbjct: 458 DARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLF-FLMEXKKVKMDHITFVAVLTAC 516

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH  +  ++  ++   M  DYG+ P +EH    + L G+ G +  A+ +I E+ F     
Sbjct: 517 SHIGL-VEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDTT 575

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           VW+  L A  +C ++++A   A  ++++E +    YV+L N+Y +   WD  + ++  M+
Sbjct: 576 VWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSNMYGNLMRWDEKAKVKRLMK 635

Query: 500 ERGLRKEAGCSWIEVEN 516
           ERG++K  G SWIEV N
Sbjct: 636 ERGVKKVPGWSWIEVNN 652



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 124/489 (25%), Positives = 223/489 (45%), Gaps = 50/489 (10%)

Query: 26  HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKY 85
           H   +K G +++V+    ++  Y K   L  A  +F E+P    VSWN++I+G++  G  
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
             + ++   +       D Y+F S L      G   LG  +HS I+K      V   + L
Sbjct: 81  EASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSAL 140

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH----------- 194
           +DMY KC  +EDA   F  +   + +SWN++I   A+ G+ E AF  L            
Sbjct: 141 LDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDD 200

Query: 195 -----RLPNPDTISY-----------------------NEVINGIAQFGDIEDAIMIL-S 225
                 LP  D   +                       N +I   ++ G ++DA  I  S
Sbjct: 201 GTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDS 260

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           S    +  +WNS+L  Y+ R++   A  L  +MQ      D Y++++++S     +    
Sbjct: 261 SAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNN 320

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKC--GQVEIADSMFRSLCRKNLVTWNAMITGY 343
           G  +H  VIK+G + S+ +++AL+ MY K   G ++ A  +F SL  K+ V+WN+++TG 
Sbjct: 321 GRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGL 380

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           ++ G     ++ F  +++   +  D  +F  VL +CS  D+   ++ +    +   YG++
Sbjct: 381 SQTGSSEDAVKSFLHMRSAA-MDIDHYSFSAVLRSCS--DLATFQLGQQIHVLALKYGLE 437

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL---SASGACS-DLDVARI 459
                  S+I +  + G +  A+R   E    S  + W AL+   +  G C+  LD+  +
Sbjct: 438 SNEFVSSSLIFMYSKCGIIEDARRSFEEASKNS-SITWNALMFGYAQHGQCNVALDLFFL 496

Query: 460 SAAEVIKLE 468
              + +K++
Sbjct: 497 MEXKKVKMD 505



 Score = 45.8 bits (107), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL   +L HS  +K G  A +   + +L+ Y KC ++  AD +F  +  ++ V+WN MI 
Sbjct: 13  ALANLLLNHSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIA 72

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           G+   G+L    ++   +++    + D  TF ++L
Sbjct: 73  GHINCGNLEASWDVLRCMRSC-GFELDRYTFGSML 106


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 170/536 (31%), Positives = 277/536 (51%), Gaps = 47/536 (8%)

Query: 20  TYCQQLHCYILKSGFLSNVFVSTALMGFYRKIN-SLADAHKMFVEIPQPSVVSWNSLISG 78
           T+  Q H + +KSG  ++ FV  +L+  Y K+  +L +A ++F  +    ++SW S+I+G
Sbjct: 77  THGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFDGLFYKDLISWTSMITG 136

Query: 79  YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
           YV+  K +K+L LF+E+    I  + ++ ++ + AC  LG L+LG   H  ++    +  
Sbjct: 137 YVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVMVRGFDLN 196

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP- 197
            VI+  LIDMYG+  +V+DAI VF E+   D I W S+I+A  RN   + A GF + +  
Sbjct: 197 DVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMCR 256

Query: 198 ----NPDTISYNEVINGIAQFGDIEDA---------------IMILSS------------ 226
               +PD  ++  V+      G ++                 + + SS            
Sbjct: 257 KHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVN 316

Query: 227 --------MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
                   M   N  SW ++L GY         + +F E +     +D Y+F T+L   A
Sbjct: 317 QSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFREGKK----VDTYSFGTVLRACA 372

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
           GL+A+  G  +H   +K+     +V  SAL+D+Y+KCG ++ A  +F  +  +NL+TWN+
Sbjct: 373 GLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAYRIFVRMSVRNLITWNS 432

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           MI G+A+NG   +V +LF+++     ++PD ++F+ VL ACSH  +  D+  +YF +MT+
Sbjct: 433 MIYGFAQNGRGGEVFQLFDEM-IEEGIRPDYISFVGVLFACSHAGL-VDQGKKYFAAMTE 490

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
            Y IKP +EH   MI L+G+ G +  A+ +I          +W  LL A  A      A 
Sbjct: 491 VYEIKPGIEHYNCMIDLLGRAGLLEEAENLIENANCRDEPSLWTVLLGACAASPHSATAE 550

Query: 459 ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
             A + ++L+ D    YV L N+Y + G WD A  +RN M +RG+ K  G SWIE 
Sbjct: 551 RIAKKAVELKPDHHLSYVYLANVYRAVGRWDDAVKIRNLMTKRGVGKMPGTSWIET 606



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 172/382 (45%), Gaps = 46/382 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + L  +++A S LG     +  H  ++  GF  N  +STAL+  Y + +++ DA  +
Sbjct: 160 PNGFTLSAVIKACSGLGDLRLGKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILV 219

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGS 119
           FVE+PQP  + W S+IS + ++  Y KAL  F  + R   +  D ++F + L ACG LG 
Sbjct: 220 FVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGR 279

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+ G  +H+K++   L   V + + L+DMYGKC  V  +  VF  M  K+++SW +++  
Sbjct: 280 LKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGG 339

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGI---------------------------- 211
             +NG+ E            DT S+  V+                               
Sbjct: 340 YCQNGDFESVIRIFREGKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTE 399

Query: 212 -------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
                  A+ G I+ A  I   M   N  +WNS++ G+    R  E   LF EM  + + 
Sbjct: 400 SALVDLYAKCGCIDFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIR 459

Query: 265 MDEYTFSTML-----SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            D  +F  +L     +G+       +  +     IK G++      + ++D+  + G +E
Sbjct: 460 PDYISFVGVLFACSHAGLVDQGKKYFAAMTEVYEIKPGIEHY----NCMIDLLGRAGLLE 515

Query: 320 IADSMFRSL-CRKNLVTWNAMI 340
            A+++  +  CR     W  ++
Sbjct: 516 EAENLIENANCRDEPSLWTVLL 537



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 4/162 (2%)

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
           A + L ++ +P S ++  I   Y     + EA+H+   +    +    + ++++L     
Sbjct: 15  ASLNLKTLENPQSKAYKII--QYCKSGSLFEAIHVLNSIDWTRLSNKPFFYASLLQTCTK 72

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG-QVEIADSMFRSLCRKNLVTWNA 338
             + T G+  HS  IK GLD    V ++LL +Y K G  +  A  +F  L  K+L++W +
Sbjct: 73  AVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFDGLFYKDLISWTS 132

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           MITGY +     K +ELF ++  +  ++P+  T   V+ ACS
Sbjct: 133 MITGYVKVEKPKKSLELFLEMLGL-GIEPNGFTLSAVIKACS 173


>gi|449442142|ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Cucumis sativus]
          Length = 704

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 169/557 (30%), Positives = 281/557 (50%), Gaps = 44/557 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + Y    +L+  +  G     QQ+H  I+K G+  NV+  +AL+  Y K   L DA+  F
Sbjct: 98  DRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSF 157

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
           + I + + VSWN++I+GY Q+G    A  L   +E+     D  ++   L          
Sbjct: 158 LSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCN 217

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIAAS 180
           L   +H KI+K+ LE    + N LI  Y KCGS++DA  +F      +D+++WNS++AA 
Sbjct: 218 LTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAY 277

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVIN---------------------GIAQ-- 213
                 +LAF  L  +      PD  SY  +I+                     G  Q  
Sbjct: 278 LLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSV 337

Query: 214 --------------FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                         +G +++A+ I  S+   +  SWNSILTG        +A+  F  M+
Sbjct: 338 PISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMR 397

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           S  + +D Y+FS +L   + L+    G  IH   +K GL+++  V+S+L+ MYSKCG +E
Sbjct: 398 SAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIE 457

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A   F    + + +TWNA++ GYA++G     ++LF  ++  + ++ D +TF+ VL AC
Sbjct: 458 DARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLMEE-KKVKMDHITFVAVLTAC 516

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH  +  ++  ++   M  DYG+ P +EH    + L G+ G +  A+ +I E+ F     
Sbjct: 517 SHIGL-VEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDTT 575

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           VW+  L A  +C ++++A   A  ++++E +    YV+L N+Y +   WD  + ++  M+
Sbjct: 576 VWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSNMYGNLMRWDEKAKVKRLMK 635

Query: 500 ERGLRKEAGCSWIEVEN 516
           ERG++K  G SWIEV N
Sbjct: 636 ERGVKKVPGWSWIEVNN 652



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 124/489 (25%), Positives = 223/489 (45%), Gaps = 50/489 (10%)

Query: 26  HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKY 85
           H   +K G +++V+    ++  Y K   L  A  +F E+P    VSWN++I+G++  G  
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
             + ++   +       D Y+F S L      G   LG  +HS I+K      V   + L
Sbjct: 81  EASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSAL 140

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH----------- 194
           +DMY KC  +EDA   F  +   + +SWN++I   A+ G+ E AF  L            
Sbjct: 141 LDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDD 200

Query: 195 -----RLPNPDTISY-----------------------NEVINGIAQFGDIEDAIMIL-S 225
                 LP  D   +                       N +I   ++ G ++DA  I  S
Sbjct: 201 GTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDS 260

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           S    +  +WNS+L  Y+ R++   A  L  +MQ      D Y++++++S     +    
Sbjct: 261 SAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNN 320

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKC--GQVEIADSMFRSLCRKNLVTWNAMITGY 343
           G  +H  VIK+G + S+ +++AL+ MY K   G ++ A  +F SL  K+ V+WN+++TG 
Sbjct: 321 GRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGL 380

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           ++ G     ++ F  +++   +  D  +F  VL +CS  D+   ++ +    +   YG++
Sbjct: 381 SQTGSSEDAVKSFLHMRSAA-MDIDHYSFSAVLRSCS--DLATFQLGQQIHVLALKYGLE 437

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL---SASGACS-DLDVARI 459
                  S+I +  + G +  A+R   E    S  + W AL+   +  G C+  LD+  +
Sbjct: 438 SNEFVSSSLIFMYSKCGIIEDARRSFEEASKNS-SITWNALMFGYAQHGQCNVALDLFFL 496

Query: 460 SAAEVIKLE 468
              + +K++
Sbjct: 497 MEEKKVKMD 505



 Score = 45.8 bits (107), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL   +L HS  +K G  A +   + +L+ Y KC ++  AD +F  +  ++ V+WN MI 
Sbjct: 13  ALANLLLNHSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIA 72

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           G+   G+L    ++   +++    + D  TF ++L
Sbjct: 73  GHINCGNLEASWDVLRCMRSC-GFELDRYTFGSML 106


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 169/557 (30%), Positives = 294/557 (52%), Gaps = 47/557 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y+L  +L A S L +    +Q+H +IL+ G   +  +   L+  Y K   +  AHK+
Sbjct: 247 PDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKL 306

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P  +++SW +L+SGY Q+  +++A+ LF  + +  +  D ++ +S L +C  L +L
Sbjct: 307 FDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHAL 366

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H+  +K +L     + N LIDMY KC  + +A  VF      D++ +N++I   
Sbjct: 367 EFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGY 426

Query: 181 ARNGN---LELAFGFLH----RLPNPDTISYNEVINGIA----------------QFG-- 215
           +R G    L  A    H    RL  P  +++  ++   A                +FG  
Sbjct: 427 SRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLN 486

Query: 216 -DI----------------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
            DI                +D+ ++   M   +   WNS+ +GYV ++   EAL+LF E+
Sbjct: 487 LDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLEL 546

Query: 259 Q-SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           Q S+D P DE+TF  M++    L++L  G   H  ++K+GL+ +  + +ALLDMY+KCG 
Sbjct: 547 QLSRDRP-DEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGS 605

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
            E A   F S   +++V WN++I+ YA +G+  K +++ E++     ++P+ +TF+ VL+
Sbjct: 606 PEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKM-MCEGIEPNYITFVGVLS 664

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           ACSH  +  D + + FE M + +GI+P  EH   M+ L+G+ G +  A+ +I ++     
Sbjct: 665 ACSHAGLVEDGLKQ-FELMLR-FGIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPA 722

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497
            +VWR+LLS      ++++A  +A   I  +      + +L N+Y S G W  A  +R  
Sbjct: 723 AIVWRSLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLSNIYASKGMWTDAKKVRER 782

Query: 498 MRERGLRKEAGCSWIEV 514
           M+  G+ KE G SWIE+
Sbjct: 783 MKFEGVVKEPGRSWIEI 799



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 210/424 (49%), Gaps = 49/424 (11%)

Query: 1   PNEYVLFHLLRASSDLG----WDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLAD 56
           PNEY+L   ++A S L     W  +  QL  +++KS F  +V+V T L+ FY K  ++  
Sbjct: 144 PNEYILSSFIQACSGLDGSGRWMVF--QLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDY 201

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A  +F  +P+ S V+W ++ISG V+ G+   +L LF +L    +  D Y  ++ L+AC  
Sbjct: 202 ARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSI 261

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           L  L+ G  IH+ I++Y  E+   + N LID Y KCG V  A  +F  M +K+IISW ++
Sbjct: 262 LPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTL 321

Query: 177 IAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIA-----QFGD----------- 216
           ++   +N   + A      +P     PD  + + ++   A     +FG            
Sbjct: 322 LSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANL 381

Query: 217 -------------------IEDAIMILSSMPSPNSSSWNSILTGYVNRN---RVPEALHL 254
                              + +A  +     + +   +N+++ GY        + +AL++
Sbjct: 382 GNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNI 441

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F +M+ + +     TF ++L   A L++L     IH  + K GL+  I   SAL+ +YS 
Sbjct: 442 FHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSN 501

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           C  ++ +  +F  +  K+LV WN+M +GY +  +  + + LF +L+  RD +PD  TF++
Sbjct: 502 CYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRD-RPDEFTFVD 560

Query: 375 VLAA 378
           ++ A
Sbjct: 561 MVTA 564



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 194/403 (48%), Gaps = 46/403 (11%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           Y   +H  I+ SG   + ++S  LM  Y +   +  A K+F ++P+ ++V+W++++S   
Sbjct: 62  YHNVVHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACN 121

Query: 81  QSGKYRKALNLFVELERSEIYA-DAYSFTSALAACGQL-GSLQ-LGMAIHSKIVKYSLER 137
             G Y ++L +F++  R+   + + Y  +S + AC  L GS + +   + S +VK   +R
Sbjct: 122 HHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRWMVFQLQSFLVKSRFDR 181

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL- 196
            V +   LID Y K G+++ A  VF  + +K  ++W ++I+   + G   ++    ++L 
Sbjct: 182 DVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLM 241

Query: 197 -----PN---------------------------------PDTISYNEVINGIAQFGDIE 218
                P+                                  D    N +I+   + G + 
Sbjct: 242 EGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVR 301

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
            A  +   MP+ N  SW ++L+GY   +   EA+ LF  M    +  D +  S++L+  A
Sbjct: 302 AAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCA 361

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            L AL +G  +H+  IK  L     V ++L+DMY+KC  +  A  +F      ++V +NA
Sbjct: 362 SLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNA 421

Query: 339 MITGYARNG---DLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           MI GY+R G   +L   + +F  ++  R ++P  +TF+++L A
Sbjct: 422 MIEGYSRLGTQWELHDALNIFHDMR-FRLIRPSLLTFVSLLRA 463



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 56/114 (49%)

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           F+ +L   A    L +  ++H  +I  GL+    +++ L+++YS+ G +  A  +F  + 
Sbjct: 47  FARLLQLRALDDPLLYHNVVHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMP 106

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
            +NLVTW+ M++    +G   + + +F      R   P+     + + ACS  D
Sbjct: 107 ERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLD 160


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 166/555 (29%), Positives = 296/555 (53%), Gaps = 47/555 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A   L      +++HC+  K GF  NVFV+ +L+  Y +      A  +
Sbjct: 216 PDFYTFPPVLKACGTL---VDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSL 272

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P   + SWN++ISG +Q+G   +AL++  E+    I  +  +  S L  C QLG +
Sbjct: 273 FDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDI 332

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
              M IH  ++K+ LE  + ++N LI+MY K G++EDA   F +M   D++SWNS+IAA 
Sbjct: 333 STAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAY 392

Query: 181 ARNGNLELAFGFLHRLP----NPDTISY-------------------------------- 204
            +N +   A GF  ++      PD ++                                 
Sbjct: 393 EQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMED 452

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N V++  A+ G ++ A  +   +P  +  SWN+++TGY       EA+ ++  M+ 
Sbjct: 453 VVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEE 512

Query: 261 -KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            K++  ++ T+ ++L   A + AL  GM IH  VIK  L   + VA+ L+D+Y KCG++ 
Sbjct: 513 CKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLV 572

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A S+F  + +++ VTWNA+I+ +  +G   K ++LF ++     ++PD VTF+++L+AC
Sbjct: 573 DAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLD-EGVKPDHVTFVSLLSAC 631

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH+   F +  ++   + ++YGIKP+++H   M+ L+G+ G +  A   I+++       
Sbjct: 632 SHSG--FVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDAS 689

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W ALL A     ++++ + ++  + +++  +   YV+L N+Y + G W+    +R+  R
Sbjct: 690 IWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLAR 749

Query: 500 ERGLRKEAGCSWIEV 514
           ERGL+K  G S IEV
Sbjct: 750 ERGLKKTPGWSTIEV 764



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 145/553 (26%), Positives = 255/553 (46%), Gaps = 53/553 (9%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE + F+ L  SS      + + LH  ++ +G + ++F+ST L+  Y  +  ++ +   F
Sbjct: 117 NEEIDFNFLFDSSTK--TPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTF 174

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER-SEIYADAYSFTSALAACGQLGSL 120
            +IPQ  V +WNS+IS YV +G + +A+  F +L   SEI  D Y+F   L ACG L   
Sbjct: 175 DQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD- 233

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH    K   +  V +A  LI MY + G    A  +F +M  +D+ SWN++I+  
Sbjct: 234 --GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGL 291

Query: 181 ARNGNLELAFGFLHRL-------------------PNPDTISY----------------- 204
            +NGN   A   L  +                   P    IS                  
Sbjct: 292 IQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDL 351

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +IN  A+FG++EDA      M   +  SWNSI+  Y   +    A   F +MQ  
Sbjct: 352 FVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLN 411

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEI 320
               D  T  ++ S +A          +H  ++++G L   +V+ +A++DMY+K G ++ 
Sbjct: 412 GFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDS 471

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  +  K++++WN +ITGYA+NG  ++ IE+++ ++  +++ P+  T++++L A +
Sbjct: 472 AHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYA 531

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H       +  +   +  +  +   V  C  +I + G+ G +  A  +  ++   S  V 
Sbjct: 532 HVGALQQGMKIHGRVIKTNLHLDVFVATC--LIDVYGKCGRLVDAMSLFYQVPQES-SVT 588

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYV-YVMLCNLYTSHGNWDVASVMRNFMR 499
           W A++S  G     +       E++      D+V +V L +  +  G  +        M+
Sbjct: 589 WNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ 648

Query: 500 ERGLR---KEAGC 509
           E G++   K  GC
Sbjct: 649 EYGIKPSLKHYGC 661


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 167/493 (33%), Positives = 262/493 (53%), Gaps = 34/493 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H ++L++GF ++VFV  AL+ +Y K   L  + K+F  + +  VVSWNS+ISGY Q 
Sbjct: 146 KEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQG 205

Query: 83  GKYRKALNLFVEL-ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           G Y     L+ E+ + S    +  +  S L ACGQ   L  GM +H  IV   +E  + +
Sbjct: 206 GLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISV 265

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
            N LI +Y KCGS++ A  +F EM +K                               D 
Sbjct: 266 CNALIGLYAKCGSLDYARELFDEMSEK-------------------------------DE 294

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           ++Y  +I+G+   G ++ ++ +   M +   S+WN+++TG V  NR    L L  EMQ+ 
Sbjct: 295 VTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQAL 354

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
               +  T S++LS IA  S+L  G  IHS  IK G   +I VA+A++DMY+K G +  A
Sbjct: 355 GFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGA 414

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F     ++LV W A+I+ YA +GD    + LF ++   + +QPD VTF  VLAAC+H
Sbjct: 415 QRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLK-QGIQPDPVTFTAVLAACAH 473

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  DK  E FESM K YGI+P VEH   ++  +G+   +  A+  + ++       VW
Sbjct: 474 CGM-VDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMPIEPSAKVW 532

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL  +   SD+++ +     + ++E ++   YV++ NLY+  G W  A  +R  M + 
Sbjct: 533 GALLHGASISSDVELGKSVCDYLFEIEPENTGNYVIMANLYSQAGRWKEADEVRERMNKV 592

Query: 502 GLRKEAGCSWIEV 514
           GL+K  G SWIE 
Sbjct: 593 GLQKIPGSSWIET 605



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 146/351 (41%), Gaps = 58/351 (16%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  +L+A        +  ++H +I+ +    ++ V  AL+G Y K  SL  A ++
Sbjct: 226 PNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYAREL 285

Query: 61  FVEIPQPSVV-------------------------------SWNSLISGYVQSGKYRKAL 89
           F E+ +   V                               +WN++I+G VQ+ ++   L
Sbjct: 286 FDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVL 345

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
           +L  E++      +A + +S L+      SL+ G  IHS  +K    R + +A  +IDMY
Sbjct: 346 DLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMY 405

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYN 205
            K G +  A  VF +  D+ ++ W ++I+A A +G+  LA G  H +      PD +++ 
Sbjct: 406 AKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFT 465

Query: 206 EVINGIAQFGDIEDAIMILSSM-----PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            V+   A  G ++ A  I  SM       P    +  ++       R+ EA     +M  
Sbjct: 466 AVLAACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKM-- 523

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
              P++              SA  WG L+H   I   ++    V   L ++
Sbjct: 524 ---PIEP-------------SAKVWGALLHGASISSDVELGKSVCDYLFEI 558


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 167/553 (30%), Positives = 285/553 (51%), Gaps = 45/553 (8%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N +V    L+    L     C  LH  I+K G+ SN FV  AL+  Y    S+  A  +F
Sbjct: 145 NPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVF 204

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             I    +V W  ++S YV++G +  +L L   +  +    + Y+F +AL A   LG+  
Sbjct: 205 EGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFD 264

Query: 122 LGMAIHSKIVK--YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
               +H +I+K  Y L+  V +   L+ +Y + G + DA  VF EM   D++ W+ +IA 
Sbjct: 265 FAKGVHGQILKTCYVLDPRVGVG--LLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIAR 322

Query: 180 SARNGNLELAFGFLHRL------PNPDTISY----------------------------- 204
             +NG    A     R+      PN  T+S                              
Sbjct: 323 FCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLD 382

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +I+  A+   ++ A+ + + + S N  SWN+++ GY N     +A  +F E   
Sbjct: 383 IYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALR 442

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             V + E TFS+ L   A L+++  G+ +H   IK      + V+++L+DMY+KCG ++ 
Sbjct: 443 NQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKF 502

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A S+F  +   ++ +WNA+I+GY+ +G   + + + + +K  RD +P+ +TFL VL+ CS
Sbjct: 503 AQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKD-RDCKPNGLTFLGVLSGCS 561

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           +  +  D+  E FESM +D+GI+P +EH   M+RL+G+ G++ +A ++I  + +    ++
Sbjct: 562 NAGL-IDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMI 620

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           WRA+LSAS   ++ + AR SA E++K+    +  YV++ N+Y     W   + +R  M+E
Sbjct: 621 WRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKE 680

Query: 501 RGLRKEAGCSWIE 513
            G++KE G SWIE
Sbjct: 681 MGVKKEPGLSWIE 693



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 206/465 (44%), Gaps = 49/465 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +HC ILK G   ++F +  L+  Y K     DA  +F E+P+ + VS+ +L  GY   
Sbjct: 69  KAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYA-- 126

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
              +  + L+  L R     + + FTS L     L   ++   +HS IVK   +    + 
Sbjct: 127 --CQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVG 184

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH--RLPN-- 198
             LI+ Y  CGSV+ A  VF  ++ KDI+ W  +++    NG  E +   L   R+    
Sbjct: 185 AALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFM 244

Query: 199 PDTISYNEVING-----------------------------------IAQFGDIEDAIMI 223
           P+  +++  +                                       Q GD+ DA  +
Sbjct: 245 PNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKV 304

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
            + MP  +   W+ ++  +       EA+ LF  M+   V  +E+T S++L+G A     
Sbjct: 305 FNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCS 364

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H  V+K G D  I V++AL+D+Y+KC +++ A  +F  L  KN V+WN +I GY
Sbjct: 365 GLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGY 424

Query: 344 ARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
              G+  K   +F E L+    +    VTF + L AC+        V  +  ++  +   
Sbjct: 425 ENLGEGGKAFSMFREALRN--QVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAK 482

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
           K  V +  S+I +  + G++  AQ +  E+        W AL+S 
Sbjct: 483 KVAVSN--SLIDMYAKCGDIKFAQSVFNEMETIDVA-SWNALISG 524



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 181/383 (47%), Gaps = 41/383 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y     L+AS  LG   + + +H  ILK+ ++ +  V   L+  Y ++  ++DA K+
Sbjct: 245 PNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKV 304

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+  VV W+ +I+ + Q+G   +A++LF+ +  + +  + ++ +S L  C      
Sbjct: 305 FNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCS 364

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  +H  +VK   +  + ++N LID+Y KC  ++ A+ +F E+  K+ +SWN+VI   
Sbjct: 365 GLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGY 424

Query: 181 ARNGNLELAFG-FLHRLPNPDTISY----------------------------------- 204
              G    AF  F   L N  +++                                    
Sbjct: 425 ENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKV 484

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+  A+ GDI+ A  + + M + + +SWN++++GY       +AL +   M+ +
Sbjct: 485 AVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDR 544

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-QGLDASIVVASALLDMYSKCGQVEI 320
           D   +  TF  +LSG +    +  G      +I+  G++  +   + ++ +  + GQ++ 
Sbjct: 545 DCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDK 604

Query: 321 ADSMFRSLC-RKNLVTWNAMITG 342
           A  +   +    +++ W AM++ 
Sbjct: 605 AMKLIEGIPYEPSVMIWRAMLSA 627


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 170/557 (30%), Positives = 300/557 (53%), Gaps = 44/557 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  LL   ++       +Q+H +++K G+ S + VS +L+  Y K  SL  A ++
Sbjct: 196 PDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQL 255

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +IP+   V++N+L++GY + G  R+A+NLF +++        ++F + L A  QL  +
Sbjct: 256 FNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDI 315

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H  +VK +    V +AN L+D Y K   V +A  +F EM + D IS+N ++   
Sbjct: 316 EFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCY 375

Query: 181 ARNGNL--------ELAFGFLHRLPNP---------------------------DTISY- 204
           A NG +        EL F    R   P                           D IS  
Sbjct: 376 AWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEI 435

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +++  A+ G+  +A  I S +   +S  W ++++ YV +    + L LF EMQ  
Sbjct: 436 LVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRA 495

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D  T+++++   A L++LT G  +HS +I  G  +++   SAL+DMY+KCG ++ A
Sbjct: 496 KIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDA 555

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACS 380
             MF+ +  +N V+WNA+I+ YA+NGD    + LFE++  VR  LQPDSV+ L++L ACS
Sbjct: 556 LQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEM--VRSGLQPDSVSLLSILCACS 613

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H  +  ++  +YF+SMT+ Y + P  EH  S I ++ + G    A++++ ++ F    ++
Sbjct: 614 HCGL-VEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIM 672

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYV-YVMLCNLYTSHGNWDVASVMRNFMR 499
           W ++L++ G   + ++A+ +A ++  ++   D   YV + N+Y + G WD    ++  MR
Sbjct: 673 WSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMR 732

Query: 500 ERGLRKEAGCSWIEVEN 516
           ERG++K    SW+E+++
Sbjct: 733 ERGVKKVPAYSWVEIKH 749



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 126/524 (24%), Positives = 235/524 (44%), Gaps = 78/524 (14%)

Query: 29  ILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG----- 83
           I+K+GF  N + S  L+  + +   L  A K+F E+P  ++ S N++I GY++SG     
Sbjct: 92  IIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEA 151

Query: 84  --------------------------KYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
                                     ++R+A  LF+E+ R  I  D  S  + L+   + 
Sbjct: 152 RTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEF 211

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
            S+     +HS ++K   +  +V++N L+D Y K  S+  A  +F ++ ++D +++N+++
Sbjct: 212 DSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALL 271

Query: 178 AASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIE--------------- 218
              ++ G    A     ++      P   ++  ++    Q  DIE               
Sbjct: 272 TGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFV 331

Query: 219 --------------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
                               +A  +   MP  +  S+N ++T Y    RV E+L LF E+
Sbjct: 332 WNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKEL 391

Query: 259 QSKDVPMDEYTFSTMLSGIAGLS-ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           Q        + F+T+LS IA +S  L  G  IHS  I     + I+V ++L+DMY+KCG+
Sbjct: 392 QFTGFDRRNFPFATLLS-IAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGE 450

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
              A+ +F  L  ++ V W AMI+ Y + G     ++LF +++  + +  D+ T+ +++ 
Sbjct: 451 FGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAK-IGADAATYASIVR 509

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           AC+   +    + +   S     G    V    +++ +  + G +  A +M +E+   + 
Sbjct: 510 ACA--SLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRN- 566

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIK--LEGDSDYVYVMLC 479
            V W AL+SA     D D       E+++  L+ DS  +  +LC
Sbjct: 567 SVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILC 610


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 162/555 (29%), Positives = 277/555 (49%), Gaps = 41/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  L+ A S  G     QQLH Y  K GF SN  +  AL+  Y K   +  A   
Sbjct: 347 PDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDY 406

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F+E    +VV WN ++  Y      R +  +F +++  EI  + Y++ S L  C +LG L
Sbjct: 407 FLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDL 466

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IHS+I+K + +    + + LIDMY K G ++ A  +      KD++SW ++IA  
Sbjct: 467 ELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGY 526

Query: 181 ARNG-------------------------NLELAFGFLHRLPNPDTISYNEVINGIA--- 212
            +                           N   A   L  L     I     ++G +   
Sbjct: 527 TQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDL 586

Query: 213 -----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                      + G IE++ +      + ++ +WN++++G+       EAL +F  M  +
Sbjct: 587 PFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNRE 646

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  + +TF + +   +  + +  G  +H+ + K G D+   V +AL+ MY+KCG +  A
Sbjct: 647 GIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDA 706

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           +  F  +  KN V+WNA+I  Y+++G  ++ ++ F+Q+    +++P+ VT + VL+ACSH
Sbjct: 707 EKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQM-IHSNVRPNHVTLVGVLSACSH 765

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  DK   YFESM  +YG+ P  EH   ++ ++ + G + RA+  I+E+      +VW
Sbjct: 766 IGL-VDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVW 824

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LLSA     ++++   +A  +++LE +    YV+L NLY     WD   + R  M+E+
Sbjct: 825 RTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEK 884

Query: 502 GLRKEAGCSWIEVEN 516
           G++KE G SWIEV+N
Sbjct: 885 GVKKEPGQSWIEVKN 899



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/486 (23%), Positives = 213/486 (43%), Gaps = 43/486 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  Y    +L A   +      +QLH  +LK GF S+ +V  AL+  Y  + +L  A  +
Sbjct: 246 PTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHI 305

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + Q   V++N+LI+G  Q G   KA+ LF  +    +  D+ +  S + AC   G+L
Sbjct: 306 FSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTL 365

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H+   K        I   L+++Y KC  +E A+  F E   ++++ WN ++ A 
Sbjct: 366 FRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY 425

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS--- 233
               +L  +F    ++      P+  +Y  ++    + GD+E    I S +   N     
Sbjct: 426 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 485

Query: 234 --------------------------------SWNSILTGYVNRNRVPEALHLFGEMQSK 261
                                           SW +++ GY   N   +AL  F +M  +
Sbjct: 486 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 545

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  DE   +  +S  AGL AL  G  IH+     G  + +   +AL+ +YS+CG++E +
Sbjct: 546 GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES 605

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F      + + WNA+++G+ ++G+  + + +F ++     +  ++ TF + + A S 
Sbjct: 606 YLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNR-EGIDNNNFTFGSAVKAASE 664

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           T     K  +   ++    G     E C ++I +  + G +  A++   E+   +  V W
Sbjct: 665 T--ANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKN-EVSW 721

Query: 442 RALLSA 447
            A+++A
Sbjct: 722 NAIINA 727



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 190/421 (45%), Gaps = 43/421 (10%)

Query: 1   PNEYVLFHLLRA--SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           PNE     +L A     + +D   +Q+H  IL  G   +  V   L+  Y +   +  A 
Sbjct: 144 PNEGTFSGVLEACRGGSVAFDV-VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLAR 202

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           ++F  +      SW ++ISG  ++    +A+ LF ++    I    Y+F+S L+AC ++ 
Sbjct: 203 RVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 262

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           SL++G  +H  ++K        + N L+ +Y   G++  A  +F  M  +D +++N++I 
Sbjct: 263 SLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLIN 322

Query: 179 ASARNGNLELAFGFLHRL------PNPDTI-----------------------------S 203
             ++ G  E A     R+      P+ +T+                             S
Sbjct: 323 GLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFAS 382

Query: 204 YNEV----INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
            N++    +N  A+  DIE A+         N   WN +L  Y   + +  +  +F +MQ
Sbjct: 383 NNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQ 442

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            +++  ++YT+ ++L     L  L  G  IHS +IK     +  V S L+DMY+K G+++
Sbjct: 443 IEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLD 502

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +      K++V+W  MI GY +     K +  F Q+   R ++ D V   N ++AC
Sbjct: 503 TAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLD-RGIRSDEVGLTNAVSAC 561

Query: 380 S 380
           +
Sbjct: 562 A 562



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 176/397 (44%), Gaps = 41/397 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           ++LH  ILK G  SN  +S  L  FY     L  A K+F E+P+ ++ +WN +I      
Sbjct: 65  RKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASR 124

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAAC-GQLGSLQLGMAIHSKIVKYSLERGVVI 141
               +   LFV +    +  +  +F+  L AC G   +  +   IH++I+   L    V+
Sbjct: 125 NLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVV 184

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN----------------GN 185
            N LID+Y + G V+ A  VF  +  KD  SW ++I+  ++N                G 
Sbjct: 185 CNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGI 244

Query: 186 LELAFGF------------------LHRLP-----NPDTISYNEVINGIAQFGDIEDAIM 222
           +   + F                  LH L      + DT   N +++     G++  A  
Sbjct: 245 MPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEH 304

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           I S+M   ++ ++N+++ G        +A+ LF  M    +  D  T ++++   +    
Sbjct: 305 IFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGT 364

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G  +H+   K G  ++  +  ALL++Y+KC  +E A   F     +N+V WN M+  
Sbjct: 365 LFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVA 424

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           Y    DL     +F Q++ + ++ P+  T+ ++L  C
Sbjct: 425 YGLLDDLRNSFRIFRQMQ-IEEIVPNQYTYPSILKTC 460



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 162/383 (42%), Gaps = 81/383 (21%)

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
           GSL  G  +HS+I+K  L+    ++  L D Y   G +  A  VF EM ++ I +WN +I
Sbjct: 59  GSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMI 118

Query: 178 AASARNGNLELAFGFLHRL------PNPDTIS---------------------------- 203
              A    +   FG   R+      PN  T S                            
Sbjct: 119 KELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGL 178

Query: 204 ------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
                  N +I+  ++ G ++ A  +   +   + SSW ++++G        EA+ LF +
Sbjct: 179 RDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCD 238

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M    +    Y FS++LS    + +L  G  +H  V+K G  +   V +AL+ +Y   G 
Sbjct: 239 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGN 298

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +  A+ +F ++ +++ VT+N +I G ++ G   K +ELF+++  +  L+PDS T  +++ 
Sbjct: 299 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH-LDGLEPDSNTLASLVV 357

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM---IRELGF 434
           ACS                                       G ++R Q++     +LGF
Sbjct: 358 ACS-------------------------------------ADGTLFRGQQLHAYTTKLGF 380

Query: 435 GSYGVVWRALLSASGACSDLDVA 457
            S   +  ALL+    C+D++ A
Sbjct: 381 ASNNKIEGALLNLYAKCADIETA 403


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  281 bits (719), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 162/555 (29%), Positives = 277/555 (49%), Gaps = 41/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  L+ A S  G     QQLH Y  K GF SN  +  AL+  Y K   +  A   
Sbjct: 387 PDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDY 446

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F+E    +VV WN ++  Y      R +  +F +++  EI  + Y++ S L  C +LG L
Sbjct: 447 FLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDL 506

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IHS+I+K + +    + + LIDMY K G ++ A  +      KD++SW ++IA  
Sbjct: 507 ELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGY 566

Query: 181 ARNG-------------------------NLELAFGFLHRLPNPDTISYNEVINGIA--- 212
            +                           N   A   L  L     I     ++G +   
Sbjct: 567 TQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDL 626

Query: 213 -----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                      + G IE++ +      + ++ +WN++++G+       EAL +F  M  +
Sbjct: 627 PFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNRE 686

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  + +TF + +   +  + +  G  +H+ + K G D+   V +AL+ MY+KCG +  A
Sbjct: 687 GIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDA 746

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           +  F  +  KN V+WNA+I  Y+++G  ++ ++ F+Q+    +++P+ VT + VL+ACSH
Sbjct: 747 EKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQM-IHSNVRPNHVTLVGVLSACSH 805

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  DK   YFESM  +YG+ P  EH   ++ ++ + G + RA+  I+E+      +VW
Sbjct: 806 IGL-VDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVW 864

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LLSA     ++++   +A  +++LE +    YV+L NLY     WD   + R  M+E+
Sbjct: 865 RTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEK 924

Query: 502 GLRKEAGCSWIEVEN 516
           G++KE G SWIEV+N
Sbjct: 925 GVKKEPGQSWIEVKN 939



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/486 (23%), Positives = 213/486 (43%), Gaps = 43/486 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  Y    +L A   +      +QLH  +LK GF S+ +V  AL+  Y  + +L  A  +
Sbjct: 286 PTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHI 345

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + Q   V++N+LI+G  Q G   KA+ LF  +    +  D+ +  S + AC   G+L
Sbjct: 346 FSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTL 405

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H+   K        I   L+++Y KC  +E A+  F E   ++++ WN ++ A 
Sbjct: 406 FRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY 465

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS--- 233
               +L  +F    ++      P+  +Y  ++    + GD+E    I S +   N     
Sbjct: 466 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 525

Query: 234 --------------------------------SWNSILTGYVNRNRVPEALHLFGEMQSK 261
                                           SW +++ GY   N   +AL  F +M  +
Sbjct: 526 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 585

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  DE   +  +S  AGL AL  G  IH+     G  + +   +AL+ +YS+CG++E +
Sbjct: 586 GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES 645

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F      + + WNA+++G+ ++G+  + + +F ++     +  ++ TF + + A S 
Sbjct: 646 YLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNR-EGIDNNNFTFGSAVKAASE 704

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           T     K  +   ++    G     E C ++I +  + G +  A++   E+   +  V W
Sbjct: 705 T--ANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKN-EVSW 761

Query: 442 RALLSA 447
            A+++A
Sbjct: 762 NAIINA 767



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 190/421 (45%), Gaps = 43/421 (10%)

Query: 1   PNEYVLFHLLRA--SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           PNE     +L A     + +D   +Q+H  IL  G   +  V   L+  Y +   +  A 
Sbjct: 184 PNEGTFSGVLEACRGGSVAFDV-VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLAR 242

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           ++F  +      SW ++ISG  ++    +A+ LF ++    I    Y+F+S L+AC ++ 
Sbjct: 243 RVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 302

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           SL++G  +H  ++K        + N L+ +Y   G++  A  +F  M  +D +++N++I 
Sbjct: 303 SLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLIN 362

Query: 179 ASARNGNLELAFGFLHRL------PNPDTI-----------------------------S 203
             ++ G  E A     R+      P+ +T+                             S
Sbjct: 363 GLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFAS 422

Query: 204 YNEV----INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
            N++    +N  A+  DIE A+         N   WN +L  Y   + +  +  +F +MQ
Sbjct: 423 NNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQ 482

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            +++  ++YT+ ++L     L  L  G  IHS +IK     +  V S L+DMY+K G+++
Sbjct: 483 IEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLD 542

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +      K++V+W  MI GY +     K +  F Q+   R ++ D V   N ++AC
Sbjct: 543 TAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLD-RGIRSDEVGLTNAVSAC 601

Query: 380 S 380
           +
Sbjct: 602 A 602



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 176/397 (44%), Gaps = 41/397 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           ++LH  ILK G  SN  +S  L  FY     L  A K+F E+P+ ++ +WN +I      
Sbjct: 105 RKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASR 164

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAAC-GQLGSLQLGMAIHSKIVKYSLERGVVI 141
               +   LFV +    +  +  +F+  L AC G   +  +   IH++I+   L    V+
Sbjct: 165 NLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVV 224

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN----------------GN 185
            N LID+Y + G V+ A  VF  +  KD  SW ++I+  ++N                G 
Sbjct: 225 CNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGI 284

Query: 186 LELAFGF------------------LHRLP-----NPDTISYNEVINGIAQFGDIEDAIM 222
           +   + F                  LH L      + DT   N +++     G++  A  
Sbjct: 285 MPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEH 344

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           I S+M   ++ ++N+++ G        +A+ LF  M    +  D  T ++++   +    
Sbjct: 345 IFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGT 404

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G  +H+   K G  ++  +  ALL++Y+KC  +E A   F     +N+V WN M+  
Sbjct: 405 LFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVA 464

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           Y    DL     +F Q++ + ++ P+  T+ ++L  C
Sbjct: 465 YGLLDDLRNSFRIFRQMQ-IEEIVPNQYTYPSILKTC 500



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 162/383 (42%), Gaps = 81/383 (21%)

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
           GSL  G  +HS+I+K  L+    ++  L D Y   G +  A  VF EM ++ I +WN +I
Sbjct: 99  GSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMI 158

Query: 178 AASARNGNLELAFGFLHRL------PNPDTIS---------------------------- 203
              A    +   FG   R+      PN  T S                            
Sbjct: 159 KELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGL 218

Query: 204 ------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
                  N +I+  ++ G ++ A  +   +   + SSW ++++G        EA+ LF +
Sbjct: 219 RDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCD 278

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M    +    Y FS++LS    + +L  G  +H  V+K G  +   V +AL+ +Y   G 
Sbjct: 279 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGN 338

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +  A+ +F ++ +++ VT+N +I G ++ G   K +ELF+++  +  L+PDS T  +++ 
Sbjct: 339 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH-LDGLEPDSNTLASLVV 397

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM---IRELGF 434
           ACS                                       G ++R Q++     +LGF
Sbjct: 398 ACS-------------------------------------ADGTLFRGQQLHAYTTKLGF 420

Query: 435 GSYGVVWRALLSASGACSDLDVA 457
            S   +  ALL+    C+D++ A
Sbjct: 421 ASNNKIEGALLNLYAKCADIETA 443


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 166/556 (29%), Positives = 289/556 (51%), Gaps = 41/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + L  +  A+S+L      +Q H   +K+G   +V+V ++L+  Y K   + DA K+
Sbjct: 116 PNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKL 175

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+ + VSW ++ISGY  S    KA+ +F  + R E   + ++ TS L+A      +
Sbjct: 176 FDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFV 235

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +HS  +K  L   V +AN L+ MY KCGS++DA+  F    DK+ I+W++++   
Sbjct: 236 YTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGY 295

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGI------------------------- 211
           A+ G+ + A    +++ +    P   +   VIN                           
Sbjct: 296 AQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQL 355

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     A+ G + DA      +  P+   W SI+TGYV        L+L+G+MQ +
Sbjct: 356 YVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQME 415

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  +E T +++L   + L+AL  G  +H+ +IK G    + + SAL  MY+KCG ++  
Sbjct: 416 RVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDG 475

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  +++++WNAMI+G ++NG   K +ELFE++  +  ++PD VTF+N+L+ACSH
Sbjct: 476 YLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKM-LLEGIKPDPVTFVNLLSACSH 534

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  D+  EYF+ M  ++ I P VEH   M+ ++ + G++  A+  I          +W
Sbjct: 535 MGL-VDRGWEYFKMMFDEFNIAPMVEHYACMVDILSRAGKLNEAKEFIESATVDHGLCLW 593

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LL A     + ++   +  ++++L       YV+L ++YT+ G+ +    +R  M+ R
Sbjct: 594 RILLGACKNHRNYELGVYAGEKLVELGSPESSAYVLLSSIYTALGDRENVERVRRIMKAR 653

Query: 502 GLRKEAGCSWIEVENV 517
           G+ KE GCSWIE++ +
Sbjct: 654 GVNKEPGCSWIELKGL 669



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 189/403 (46%), Gaps = 46/403 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEI--PQPSVVSWNSLISGYV 80
           + LH  ILK+G +S+++V+   +  Y K N L+ A  +F  I       VSWNSLI+ + 
Sbjct: 31  RTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLINAFS 90

Query: 81  QSGKYRK---ALNLFVELERS-EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE 136
           Q+        A++LF  + R+  +  +A++     +A   L  +  G   HS  VK    
Sbjct: 91  QNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCS 150

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA--------------- 181
             V + + L++MY K G V DA  +F  M +++ +SW ++I+  A               
Sbjct: 151 GDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELM 210

Query: 182 -RNGNLELAFGFLHRLP--NPDTISY---------------------NEVINGIAQFGDI 217
            R   ++  F     L     D   Y                     N ++   A+ G +
Sbjct: 211 RREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSL 270

Query: 218 EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277
           +DA+         NS +W++++TGY       +AL LF +M S  V   E+T   +++  
Sbjct: 271 DDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINAC 330

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
           + L A+  G  +HS   K G    + V SA++DMY+KCG +  A   F  + + ++V W 
Sbjct: 331 SDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWT 390

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           ++ITGY +NGD    + L+ +++  R + P+ +T  +VL ACS
Sbjct: 391 SIITGYVQNGDYEGGLNLYGKMQMERVI-PNELTMASVLRACS 432



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 151/315 (47%), Gaps = 46/315 (14%)

Query: 111 LAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID--K 168
           L  C    ++  G  +H++I+K      + + N  +++Y K   +  A+ +F  + D  K
Sbjct: 18  LIECTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDK 77

Query: 169 DIISWNSVIAASARN---GNLELAFGFLHRL-------PNPDTISY-------------- 204
           D +SWNS+I A ++N    +   A     R+       PN  T++               
Sbjct: 78  DDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAG 137

Query: 205 -------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245
                              + ++N   + G + DA  +   MP  N+ SW ++++GY + 
Sbjct: 138 KQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASS 197

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
           +   +A+ +F  M+ ++   +E+  +++LS +     +  G  +HS  IK GL A + VA
Sbjct: 198 DIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVA 257

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           +AL+ MY+KCG ++ A   F     KN +TW+AM+TGYA+ GD  K ++LF ++ +   L
Sbjct: 258 NALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVL 317

Query: 366 QPDSVTFLNVLAACS 380
            P   T + V+ ACS
Sbjct: 318 -PSEFTLVGVINACS 331


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 164/553 (29%), Positives = 287/553 (51%), Gaps = 39/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +     L   ++ G      Q+H  ++K+G    + VS +L+  Y K  ++  A  +
Sbjct: 192 PNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARIL 251

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +    SVV+WNS+ISGY  +G   +AL +F  +  + +     SF S +  C  L  L
Sbjct: 252 FDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKEL 311

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
           +    +H  +VKY       I   L+  Y KC ++ DA+ +F E+    +++SW ++I+ 
Sbjct: 312 RFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISG 371

Query: 180 SARNGNLELAFGFLHRL------PNPDT----------ISYNEV---------------- 207
             +N   E A      +      PN  T          IS +EV                
Sbjct: 372 FLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVG 431

Query: 208 ---INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
              ++   + G +E+A  + S +   +  +W+++L GY        A+ +FGE+    + 
Sbjct: 432 TALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIK 491

Query: 265 MDEYTFSTMLSGIAGLSA-LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
            +E+TFS++L+  A  +A +  G   H   IK  LD+S+ V+SALL MY+K G +E A+ 
Sbjct: 492 PNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEE 551

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F+    K+LV+WN+MI+GYA++G   K +++F+++K  R ++ D VTF+ V AAC+H  
Sbjct: 552 VFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKK-RKVKMDGVTFIGVFAACTHAG 610

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
           +  ++  +YF+ M +D  I PT EH   M+ L  + G++ +A ++I  +   +   +WR 
Sbjct: 611 L-VEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRT 669

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           +L+A       ++ R++A ++I ++ +    YV+L N+Y   G+W   + +R  M ER +
Sbjct: 670 ILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNV 729

Query: 504 RKEAGCSWIEVEN 516
           +KE G SWIEV+N
Sbjct: 730 KKEPGYSWIEVKN 742



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 138/509 (27%), Positives = 260/509 (51%), Gaps = 59/509 (11%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           +L+ S+ L  + + +QLHC  +K GFL +V V T+L+  Y K ++  D  K+F E+ + +
Sbjct: 99  VLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERN 158

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           VV+W +LISGY ++    + L LF+ ++      ++++F +AL    + G    G+ +H+
Sbjct: 159 VVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHT 218

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-NLE 187
            +VK  L++ + ++N LI++Y KCG+V  A  +F +   K +++WNS+I+  A NG +LE
Sbjct: 219 VVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLE 278

Query: 188 LAFGFLHRL-------------------PNPDTISYNEVIN-GIAQFG-----DIEDAIM 222
            A G  + +                    N   + + E ++  + ++G     +I  A+M
Sbjct: 279 -ALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALM 337

Query: 223 ILSSMPSP---------------NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
           +  S  +                N  SW ++++G++  +   EA+ LF EM+ K V  +E
Sbjct: 338 VAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNE 397

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
           +T+S +L+ +  +S       +H+ V+K   + S  V +ALLD Y K G+VE A  +F  
Sbjct: 398 FTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSG 453

Query: 328 LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387
           +  K++V W+AM+ GYA+ G+    I++F +L T   ++P+  TF ++L  C+ T+    
Sbjct: 454 IDDKDIVAWSAMLAGYAQTGETEAAIKMFGEL-TKGGIKPNEFTFSSILNVCAATNASMG 512

Query: 388 KVSEYFESMTKDYGIKPTVEH--CCS--MIRLMGQKGEVWRAQRMI---RELGFGSYGVV 440
           +  ++       + IK  ++   C S  ++ +  +KG +  A+ +    RE    S+  +
Sbjct: 513 QGKQF-----HGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSM 567

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEG 469
                    A   LDV +      +K++G
Sbjct: 568 ISGYAQHGQAMKALDVFKEMKKRKVKMDG 596



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 171/365 (46%), Gaps = 41/365 (11%)

Query: 54  LADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
           L +AH +F + P     S+ SL+ G+ + G+ ++A  LF+ + R  +  D   F+S L  
Sbjct: 43  LYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKV 102

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISW 173
              L     G  +H + +K+     V +   L+D Y K  + +D   VF EM ++++++W
Sbjct: 103 SATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTW 162

Query: 174 NSVIAASARNGNLELAFGFLHRLPN----PDTISY------------------------- 204
            ++I+  ARN   +       R+ N    P++ ++                         
Sbjct: 163 TTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVK 222

Query: 205 ----------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
                     N +IN   + G++  A ++       +  +WNS+++GY       EAL +
Sbjct: 223 NGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGM 282

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F  M+   V + E +F++++   A L  L +   +H  V+K G      + +AL+  YSK
Sbjct: 283 FYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSK 342

Query: 315 CGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           C  +  A  +F+ + C  N+V+W AMI+G+ +N    + ++LF ++K  + ++P+  T+ 
Sbjct: 343 CTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKR-KGVRPNEFTYS 401

Query: 374 NVLAA 378
            +L A
Sbjct: 402 VILTA 406



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 115/252 (45%), Gaps = 14/252 (5%)

Query: 209 NGIAQ-----FGDIE-----DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
           NG+AQ     FG +      +A  +    P  +  S+ S+L G+    R  EA  LF  +
Sbjct: 25  NGVAQVRIYCFGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNI 84

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
               + MD   FS++L   A L    +G  +H   IK G    + V ++L+D Y K    
Sbjct: 85  HRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNF 144

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           +    +F  +  +N+VTW  +I+GYARN    +V+ LF +++     QP+S TF   L  
Sbjct: 145 KDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQN-EGTQPNSFTFAAALGV 203

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
            +   +    +  +  ++    G+  T+    S+I L  + G V +A+ +  +    S  
Sbjct: 204 LAEEGVGGRGLQVH--TVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSV- 260

Query: 439 VVWRALLSASGA 450
           V W +++S   A
Sbjct: 261 VTWNSMISGYAA 272


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 177/556 (31%), Positives = 284/556 (51%), Gaps = 45/556 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+    +L   +   +    +QLH  I+K  F SN+FV+ AL+  Y K  +L +A K 
Sbjct: 316 PDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKH 375

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     +SWN++I GYVQ      A +LF  +    I  D  S  S L+ACG +  L
Sbjct: 376 FEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVL 435

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G   H   VK  LE  +   + LIDMY KCG ++DA   +  M ++ ++S N++IA  
Sbjct: 436 EAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGY 495

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVIN--------------------------- 209
           A   N + +   LH +      P  I++  +I+                           
Sbjct: 496 ALK-NTKESINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGS 554

Query: 210 ---GIAQFG------DIEDAIMILSSMPSPNS-SSWNSILTGYVNRNRVPEALHLFGEMQ 259
              G +  G       + DA ++ S   S  S   W ++++G++       AL+L+ EM+
Sbjct: 555 EFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREMR 614

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
             ++  D+ TF T+L   A LS+L  G  IHS +   G D   + +SAL+DMY+KCG V+
Sbjct: 615 DNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVK 674

Query: 320 IADSMFRSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            +  +F  L  +K++++WN+MI G+A+NG     +++F+++ T   + PD VTFL VL A
Sbjct: 675 SSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEM-TQSCITPDDVTFLGVLTA 733

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH    ++   + F+ M   YGI+P V+H   M+ L+G+ G +  A+  I +L      
Sbjct: 734 CSHAGWVYEG-RQIFDVMVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDKLEVEPNA 792

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
           ++W  LL A     D    + +A ++I+LE  S   YV+L N+Y + GNWD A  +R  M
Sbjct: 793 MIWANLLGACRIHGDEKRGQRAAKKLIELEPQSSSPYVLLSNMYAASGNWDEARSLRRTM 852

Query: 499 RERGLRKEAGCSWIEV 514
            ++ ++K  GCSWI V
Sbjct: 853 IKKDIQKIPGCSWIVV 868



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/319 (31%), Positives = 167/319 (52%), Gaps = 9/319 (2%)

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           V  WN  + G       R  L  +     S    D ++F   L+AC +L +L LG A+HS
Sbjct: 13  VRQWNWRVQGTKHYSSER-VLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHS 71

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI--ISWNSVIAASARNGNL 186
            ++K  LE        LI +Y KC S+  A  +F       +  +SW ++I+   + G  
Sbjct: 72  CVIKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLP 131

Query: 187 ELAFGFLHRLPN---PDTISYNEVINGIAQFGDIEDAIMILSSMPSP--NSSSWNSILTG 241
             A     ++ N   PD ++   V+N     G ++DA  +   MP P  N  +WN +++G
Sbjct: 132 HEALHIFDKMRNSAVPDQVALVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISG 191

Query: 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
           +       EAL  F +M    V     T +++LS IA L+AL  G+L+H+  IKQG ++S
Sbjct: 192 HAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESS 251

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
           I VAS+L++MY KC   + A  +F ++ +KN++ WNAM+  Y++NG L+ V+ELF  + +
Sbjct: 252 IYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMIS 311

Query: 362 VRDLQPDSVTFLNVLAACS 380
              + PD  T+ ++L+ C+
Sbjct: 312 C-GIHPDEFTYTSILSTCA 329



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 199/397 (50%), Gaps = 43/397 (10%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H + +K GF S+++V+++L+  Y K     DA ++F  I Q +++ WN+++  Y Q+G 
Sbjct: 239 VHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGF 298

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
               + LF+++    I+ D +++TS L+ C     L++G  +HS I+K      + + N 
Sbjct: 299 LSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNA 358

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPD 200
           LIDMY K G++++A   F  M  +D ISWN++I    +      AF    R+      PD
Sbjct: 359 LIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPD 418

Query: 201 TISYNEVINGIA---------QF--------------------------GDIEDAIMILS 225
            +S   +++            QF                          GDI+DA    S
Sbjct: 419 EVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYS 478

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           SMP  +  S N+++ GY  +N   E+++L  EMQ   +   E TF++++    G + +  
Sbjct: 479 SMPERSVVSVNALIAGYALKN-TKESINLLHEMQILGLKPSEITFASLIDVCKGSAKVIL 537

Query: 286 GMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSLCR-KNLVTWNAMITGY 343
           G+ IH  ++K+G L  S  + ++LL MY    ++  A+ +F      K++V W A+I+G+
Sbjct: 538 GLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGH 597

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            +N      + L+ +++   ++ PD  TF+ VL AC+
Sbjct: 598 IQNECSDVALNLYREMRD-NNISPDQATFVTVLQACA 633



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 186/377 (49%), Gaps = 43/377 (11%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQP--SVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           ++  Y  +  L DA ++F ++P P  +VV+WN +ISG+ ++  Y +AL  F ++ +  + 
Sbjct: 155 VLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVK 214

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
           +   +  S L+A   L +L  G+ +H+  +K   E  + +A+ LI+MYGKC   +DA  V
Sbjct: 215 SSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQV 274

Query: 162 FGEMIDKDIISWNSVIAASARNGNL----ELAFGFLHRLPNPDTISY------------- 204
           F  +  K++I WN+++   ++NG L    EL    +    +PD  +Y             
Sbjct: 275 FDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYL 334

Query: 205 ----------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGY 242
                                 N +I+  A+ G +++A      M   +  SWN+I+ GY
Sbjct: 335 EVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGY 394

Query: 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
           V       A  LF  M    +  DE + +++LS    +  L  G   H   +K GL+ ++
Sbjct: 395 VQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNL 454

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
              S+L+DMYSKCG ++ A   + S+  +++V+ NA+I GYA   +  + I L  +++ +
Sbjct: 455 FAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALK-NTKESINLLHEMQ-I 512

Query: 363 RDLQPDSVTFLNVLAAC 379
             L+P  +TF +++  C
Sbjct: 513 LGLKPSEITFASLIDVC 529



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 210/442 (47%), Gaps = 26/442 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++     L A + L      + +H  ++KSG  S  F   AL+  Y K NSL  A  +
Sbjct: 45  PDQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSFCQGALIHLYAKCNSLTCARTI 104

Query: 61  FVEIPQPSV--VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           F   P P +  VSW +LISGYVQ+G   +AL++F ++  S +  D  +  + L A   LG
Sbjct: 105 FASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAV-PDQVALVTVLNAYISLG 163

Query: 119 SL----QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN 174
            L    QL   +   I      R VV  N +I  + K    E+A+  F +M    + S  
Sbjct: 164 KLDDACQLFQQMPIPI------RNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSR 217

Query: 175 SVIA---------ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILS 225
           S +A         A+  +G L  A        +   ++ + +IN   +    +DA  +  
Sbjct: 218 STLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVA-SSLINMYGKCQMPDDARQVFD 276

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           ++   N   WN++L  Y     +   + LF +M S  +  DE+T++++LS  A    L  
Sbjct: 277 AISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEV 336

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  +HS +IK+   +++ V +AL+DMY+K G ++ A   F  +  ++ ++WNA+I GY +
Sbjct: 337 GRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQ 396

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
                    LF ++  +  + PD V+  ++L+AC   +I   +  + F  ++   G++  
Sbjct: 397 EEVEAGAFSLFRRM-ILDGIVPDEVSLASILSACG--NIKVLEAGQQFHCLSVKLGLETN 453

Query: 406 VEHCCSMIRLMGQKGEVWRAQR 427
           +    S+I +  + G++  A +
Sbjct: 454 LFAGSSLIDMYSKCGDIKDAHK 475


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  281 bits (718), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 169/555 (30%), Positives = 291/555 (52%), Gaps = 42/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ YV+  +L A S L +    +Q+H Y+L+ G   +V V   L+ FY K N +    K+
Sbjct: 228 PDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKL 287

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++   +++SW ++ISGY+Q+    +A+ LF E+ R     D ++ TS L +CG   +L
Sbjct: 288 FDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREAL 347

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H+  +K +LE    + N LIDMY K   + DA  VF  M ++++IS+N++I   
Sbjct: 348 EQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGY 407

Query: 181 ARNGNLELAFGFLH----RLPNPDTISY---------------NEVING-IAQFGD---- 216
           +    L  A    H    RL  P  +++               ++ I+G I +FG     
Sbjct: 408 SSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDL 467

Query: 217 ---------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                          ++DA  +   M   +   WN++  GY       EAL L+  +Q  
Sbjct: 468 FAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFS 527

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
               +E+TF+ +++  + L++L  G   H+ ++K GLD    V +AL+DMY+KCG +E A
Sbjct: 528 RQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEA 587

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             MF S   +++V WN+MI+ +A++G+  + + +F ++     +QP+ VTF+ VL+ACSH
Sbjct: 588 RKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMK-EGIQPNYVTFVAVLSACSH 646

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
                D ++ +F SM   +GIKP  EH   ++ L+G+ G+++ A+  I ++      +VW
Sbjct: 647 AGRVEDGLN-HFNSMP-GFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVW 704

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R+LLSA     ++++ + +A   I  +      Y++L N++ S G W     +R+ M   
Sbjct: 705 RSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSS 764

Query: 502 GLRKEAGCSWIEVEN 516
            + KE G SWIEV N
Sbjct: 765 EVVKEPGRSWIEVNN 779



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/421 (30%), Positives = 222/421 (52%), Gaps = 42/421 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+VL  ++RA + LG      QLH ++++SGF  +V+V T+L+ FY K  ++ +A  +
Sbjct: 127 PNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLV 186

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ + + V+W ++I+GY + G+   +L LF ++  + +  D Y  +S L+AC  L  L
Sbjct: 187 FDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFL 246

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH+ +++   E  V + N LID Y KC  V+    +F +M+ K+IISW ++I+  
Sbjct: 247 EGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGY 306

Query: 181 ARNG----NLELAFGFLHRLP-NPDTISYNEVI--------------------------- 208
            +N      ++L FG ++RL   PD  +   V+                           
Sbjct: 307 MQNSFDWEAMKL-FGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESD 365

Query: 209 ----NGI----AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               NG+    A+   + DA  +   M   N  S+N+++ GY ++ ++ EAL LF EM+ 
Sbjct: 366 EFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRV 425

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +  P    TF ++L   A L AL     IH  +IK G+   +   SAL+D+YSKC  V+ 
Sbjct: 426 RLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKD 485

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  +  K++V WNAM  GY ++ +  + ++L+  L+  R  +P+  TF  ++ A S
Sbjct: 486 ARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQ-KPNEFTFAALITAAS 544

Query: 381 H 381
           +
Sbjct: 545 N 545



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 202/417 (48%), Gaps = 41/417 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P      +LL+ S       + + +H  I+ SG  S+ F++  L+    K + + +A  +
Sbjct: 25  PKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVV 84

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER-SEIYADAYSFTSALAACGQLGS 119
           F ++P  ++++W+S++S Y Q G   +AL +FV+L+R S  + + +   S + AC QLG 
Sbjct: 85  FDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGV 144

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           ++ G  +H  +V+   ++ V +   LID Y K G++E+A  VF ++ +K  ++W ++IA 
Sbjct: 145 VEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAG 204

Query: 180 SARNGN--------------------------------LELAFG-------FLHRLPNPD 200
             + G                                 LE   G        L R    D
Sbjct: 205 YTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMD 264

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +I+   +   ++    +   M   N  SW ++++GY+  +   EA+ LFGEM  
Sbjct: 265 VSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNR 324

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
                D +  +++L+      AL  G  +H+  IK  L++   V + L+DMY+K   +  
Sbjct: 325 LGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLID 384

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           A  +F  +  +N++++NAMI GY+    L++ +ELF +++ VR   P  +TF+++L 
Sbjct: 385 AKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMR-VRLFPPSLLTFVSLLG 440



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 80/164 (48%), Gaps = 3/164 (1%)

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
           +IH  +I  GL +   +A+ L+++ SK  +V+ A  +F  +  KNL+TW++M++ Y++ G
Sbjct: 48  IIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQG 107

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407
              + + +F  L+      P+     +V+ AC+   +  +K ++    + +  G    V 
Sbjct: 108 YSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGV-VEKGAQLHGFVVRS-GFDQDVY 165

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC 451
              S+I    + G +  A+ +  +L   +  V W  +++    C
Sbjct: 166 VGTSLIDFYSKNGNIEEARLVFDQLSEKT-AVTWTTIIAGYTKC 208


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  281 bits (718), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 176/546 (32%), Positives = 274/546 (50%), Gaps = 47/546 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH YILKSGF     V  +L+ FY K + +  A K+F E+ +  V+SWNS+I+GYV +
Sbjct: 215 EQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSN 274

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   K L++FV++  S I  D  +  S  A C     + LG A+H   VK    R     
Sbjct: 275 GLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFC 334

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
           N L+DMY KCG ++ A  VF EM  + ++S+ S+IA  AR G    A      +     +
Sbjct: 335 NTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394

Query: 199 PDTISYNEVINGIA-----------------------------------QFGDIEDAIMI 223
           PD  +   V+N  A                                   + G + +A ++
Sbjct: 395 PDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELV 454

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ-SKDVPMDEYTFSTMLSGIAGLSA 282
            S M   +  SWN+++ GY       EAL LF  +   K    DE T + +L   A LSA
Sbjct: 455 FSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSA 514

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
              G  IH  +++ G  +   VA++L+DMY+KCG + +A  +F  +  K+LV+W  MI G
Sbjct: 515 FDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAG 574

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           Y  +G   + I LF Q++    ++PD ++F+++L ACSH+ +  D+   +F  M  +  I
Sbjct: 575 YGMHGFGKEAIALFNQMRQA-GIEPDEISFVSLLYACSHSGL-VDEGWRFFNIMRHECKI 632

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
           +PTVEH   ++ ++ + G + +A R I  +       +W ALL       D+ +A   A 
Sbjct: 633 EPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAE 692

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN-----V 517
           +V +LE ++   YV++ N+Y     W+    +R  + +RGLRK  GCSWIE++      V
Sbjct: 693 KVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFV 752

Query: 518 AAHSSN 523
           A  SSN
Sbjct: 753 AGDSSN 758



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 188/409 (45%), Gaps = 42/409 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++  +I  +GF+ +  + + L   Y     L +A ++F ++     + WN L++   +S
Sbjct: 114 KEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKS 173

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G +  ++ LF ++  S +  D+Y+F+    +   L S+  G  +H  I+K        + 
Sbjct: 174 GDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVG 233

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-----------------N 185
           N L+  Y K   V+ A  VF EM ++D+ISWNS+I     NG                  
Sbjct: 234 NSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIE 293

Query: 186 LELA-----------------------FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIM 222
           ++LA                       FG        D    N +++  ++ GD++ A +
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFC-NTLLDMYSKCGDLDSAKV 352

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           +   M   +  S+ S++ GY       EA+ LF EM+ + +  D YT + +L+  A    
Sbjct: 353 VFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRL 412

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G  +H  + +  +   I V++AL+DMY+KCG +  A+ +F  +  K++++WN +I G
Sbjct: 413 LDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGG 472

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE 391
           Y++N    + + LF  L   +   PD  T   VL AC+     FDK  E
Sbjct: 473 YSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLS-AFDKGRE 520



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 98/192 (51%), Gaps = 4/192 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +  +L A + L      +++H YI+++G+ S+  V+ +L+  Y K  +L  A  +
Sbjct: 497 PDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLL 556

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +I    +VSW  +I+GY   G  ++A+ LF ++ ++ I  D  SF S L AC   G +
Sbjct: 557 FDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLV 616

Query: 121 QLGMAIHSKIVKY--SLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
             G    + I+++   +E  V    C++DM  + G++  A      M I  D   W +++
Sbjct: 617 DEGWRFFN-IMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALL 675

Query: 178 AASARNGNLELA 189
                + +++LA
Sbjct: 676 CGCRIHHDVKLA 687



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%)

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
           +D  T  ++L   A   +L  G  + + +   G      + S L  MY+ CG ++ A  +
Sbjct: 92  IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRV 151

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
           F  +  +  + WN ++   A++GD +  I LF+++ +   ++ DS TF
Sbjct: 152 FDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMS-SGVEMDSYTF 198


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  281 bits (718), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 150/488 (30%), Positives = 277/488 (56%), Gaps = 9/488 (1%)

Query: 30  LKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKAL 89
           ++  FL + F+S +       +NS+      F ++  P+V  +N++I G+V  G   +AL
Sbjct: 165 IQDCFLVHQFISASF-----ALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRAL 219

Query: 90  NLFVE-LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
             +V  LE S +   +Y+F+S + AC  + +++LG  +H  I K   E  + +   L+D 
Sbjct: 220 QCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDF 279

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVI 208
           Y K   + +A  VF EM ++D  +W ++++A AR G+++ A      +P  +T ++N +I
Sbjct: 280 YSKLEILSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMI 339

Query: 209 NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268
           +G A+ G++E A ++ + MP+ +  SW +++T Y    +  +AL ++ EM+   +  DE 
Sbjct: 340 DGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEV 399

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           T ST+ S  A + AL  G  IH  V+ QGL+  + + SAL+DMY+KCG ++++  +F  L
Sbjct: 400 TMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKL 459

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDK 388
             KNL  WNA+I G A +G   K + +F  ++  + + P+ VTF+++L+AC+H  +  D+
Sbjct: 460 TDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREK-IMPNGVTFISILSACTHAGL-VDE 517

Query: 389 VSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSAS 448
               F SMT+DY I+P + H   M+ ++ + G +  A  +I+ + F    ++W ALL+  
Sbjct: 518 GRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGC 577

Query: 449 GACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE-A 507
               + ++A  +  +++ LE  +   Y +L ++Y    +W   + +R+ M+E+G+ K+  
Sbjct: 578 KLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYP 637

Query: 508 GCSWIEVE 515
           G SWIE+E
Sbjct: 638 GSSWIELE 645



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 148/344 (43%), Gaps = 103/344 (29%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLAD---- 56
           P  Y    L++A + +      Q +HC+I K GF S++FV TAL+ FY K+  L++    
Sbjct: 233 PTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKV 292

Query: 57  ---------------------------AHKMFVEIPQPSVVSWNSLISGYV--------- 80
                                      A K+F E+P+ +  +WN++I GY          
Sbjct: 293 FDEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAE 352

Query: 81  ----------------------QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
                                 Q+ +Y+ AL ++ E+  + I  D  + ++  +AC  +G
Sbjct: 353 LLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIG 412

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           +L+LG  IH  ++   L   V I + L+DMY KCGS++ ++ +F ++ DK++  WN+VI 
Sbjct: 413 ALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIE 472

Query: 179 ASARNGNLELA---FGFLHR---LPN---------------------------------- 198
             A +G  E A   F  + R   +PN                                  
Sbjct: 473 GLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIR 532

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMP-SPNSSSWNSILTG 241
           PD   Y  +++ +++ G + +A+ ++ SM   PNS  W ++L G
Sbjct: 533 PDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNG 576



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 118/265 (44%), Gaps = 30/265 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +  +  A + +G     +++H Y++  G   +V++ +AL+  Y K  SL  +  +
Sbjct: 396 PDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLI 455

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++   ++  WN++I G    G   KAL +F  +ER +I  +  +F S L+AC   G +
Sbjct: 456 FFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLV 515

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G +    + + Y +   +    C++DM  K G + +A+ +   M  + + I W +++ 
Sbjct: 516 DEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLN 575

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
               +GN E+A                          D  + +MIL  M   NS  +N +
Sbjct: 576 GCKLHGNCEIA-------------------------EDAVEQLMILEPM---NSGHYNLL 607

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDV 263
           ++ Y       E  H+   M+ K V
Sbjct: 608 VSMYAEEKDWMEVAHIRSMMKEKGV 632


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  281 bits (718), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 165/527 (31%), Positives = 271/527 (51%), Gaps = 36/527 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q++   I+  GF  N +V+  ++  +  +  +A A  +F   P P V  WN++  GY  +
Sbjct: 84  QKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHN 143

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
             YR+ + LF +++  ++  + ++F   L +C ++G+   G  IH +++K  LE    +A
Sbjct: 144 AFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVA 203

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA--------ASARN----------- 183
             LID+Y    ++  A  +F  M++++I++W S+I+        A AR            
Sbjct: 204 TTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVV 263

Query: 184 ------------GNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
                       G+++ A      +P  DT+S+N ++NG A  GD+E    +   MP  N
Sbjct: 264 LWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERN 323

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEM--QSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
             SWN ++ GY +     E L  F  M      VP D  T  T+LS  A L AL  G  +
Sbjct: 324 VFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDA-TLVTVLSACARLGALDLGKWV 382

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H      G   SI V +AL+DMYSKCG +E A  +F S+  K+L+TWN+MI G A +G  
Sbjct: 383 HVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCG 442

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409
              + LF Q+K +   +PD +TF+ VL +C+H  +  ++ + YF SM  +Y I P +EH 
Sbjct: 443 ADALTLFHQMK-INGEKPDGITFIGVLCSCTHLGL-VEEGTSYFNSMVNEYSIAPQIEHY 500

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469
             M+ L G+ G + RA   ++ +   +  V+W ALL A     ++D+A ++  ++I LE 
Sbjct: 501 GCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEP 560

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            +   YV+L N+Y   G W   + ++  MR+ G +K  GCS IEV +
Sbjct: 561 KNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVND 607



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 101/198 (51%), Gaps = 2/198 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+  L  +L A + LG     + +H Y    GF  +++V  AL+  Y K   + +A ++
Sbjct: 358 PNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEV 417

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    +++WNS+I G    G    AL LF +++ +    D  +F   L +C  LG +
Sbjct: 418 FESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLV 477

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G +  + +V +YS+   +    C++D++G+ G ++ AI     M ++ D + W +++ 
Sbjct: 478 EEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLG 537

Query: 179 ASARNGNLELAFGFLHRL 196
           A     N++LA   L +L
Sbjct: 538 ACRIYKNIDLAELALQKL 555


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  280 bits (717), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 165/527 (31%), Positives = 271/527 (51%), Gaps = 36/527 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q++   I+  GF  N +V+  ++  +  +  +A A  +F   P P V  WN++  GY  +
Sbjct: 42  QKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHN 101

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
             YR+ + LF +++  ++  + ++F   L +C ++G+   G  IH +++K  LE    +A
Sbjct: 102 AFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVA 161

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA--------ASARN----------- 183
             LID+Y    ++  A  +F  M++++I++W S+I+        A AR            
Sbjct: 162 TTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVV 221

Query: 184 ------------GNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
                       G+++ A      +P  DT+S+N ++NG A  GD+E    +   MP  N
Sbjct: 222 LWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERN 281

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEM--QSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
             SWN ++ GY +     E L  F  M      VP D  T  T+LS  A L AL  G  +
Sbjct: 282 VFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDA-TLVTVLSACARLGALDLGKWV 340

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H      G   SI V +AL+DMYSKCG +E A  +F S+  K+L+TWN+MI G A +G  
Sbjct: 341 HVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCG 400

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409
              + LF Q+K +   +PD +TF+ VL +C+H  +  ++ + YF SM  +Y I P +EH 
Sbjct: 401 ADALTLFHQMK-INGEKPDGITFIGVLCSCTHLGL-VEEGTSYFNSMVNEYSIAPQIEHY 458

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469
             M+ L G+ G + RA   ++ +   +  V+W ALL A     ++D+A ++  ++I LE 
Sbjct: 459 GCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEP 518

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            +   YV+L N+Y   G W   + ++  MR+ G +K  GCS IEV +
Sbjct: 519 KNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVND 565



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 101/198 (51%), Gaps = 2/198 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+  L  +L A + LG     + +H Y    GF  +++V  AL+  Y K   + +A ++
Sbjct: 316 PNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEV 375

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    +++WNS+I G    G    AL LF +++ +    D  +F   L +C  LG +
Sbjct: 376 FESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLV 435

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G +  + +V +YS+   +    C++D++G+ G ++ AI     M ++ D + W +++ 
Sbjct: 436 EEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLG 495

Query: 179 ASARNGNLELAFGFLHRL 196
           A     N++LA   L +L
Sbjct: 496 ACRIYKNIDLAELALQKL 513


>gi|449519412|ref|XP_004166729.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Cucumis sativus]
          Length = 781

 Score =  280 bits (717), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 177/543 (32%), Positives = 284/543 (52%), Gaps = 49/543 (9%)

Query: 16  LGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSL 75
            GW     QLH   LK GF  +VFV  AL+  Y +   L DA K+F E+P    VSW+++
Sbjct: 189 FGW-----QLHTLALKCGFKGDVFVGNALVTMYSRWEHLVDARKVFDEMPSRDRVSWSAM 243

Query: 76  ISGYVQSGKY-RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS 134
           I+GY Q G    +A+ +FV++ R  +  D    T AL+ CG   +L+LG  IH   VK  
Sbjct: 244 ITGYAQEGDNGLQAILVFVQMVREGVKFDNVPITGALSVCGHERNLELGKQIHCLAVKTG 303

Query: 135 LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI------AASARNG---- 184
            E    + N LI  Y KC  +EDA  VF  + D+++ISW ++I      A S  N     
Sbjct: 304 HETHTSVGNVLISTYSKCEIIEDAKAVFELINDRNVISWTTMISLYEEGAVSLFNKMRLD 363

Query: 185 ----NLELAFGFLHRLPNPDTISYNEVINGI--------------------AQFGDIEDA 220
               N     G LH +   + +    +++G+                    A+F  ++DA
Sbjct: 364 GVYPNDVTFIGLLHAITIRNMVEQGLMVHGLCIKADFVSELTVGNSLITMYAKFEFMQDA 423

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALH--LFGEMQSKDVPMDEYTFSTMLSGIA 278
             +   +P     SWN++++GY       EAL   L+  M+ K    +EYTF ++L+ I+
Sbjct: 424 SRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAIMEYKP---NEYTFGSVLNAIS 480

Query: 279 GLS--ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
                +L  G   HS +IK GL+   +++ ALLDMY+K G ++ +  +F    +++   W
Sbjct: 481 AGEDISLKHGQRCHSHLIKVGLNVDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAW 540

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
            A+I+GYA++GD   VI+LFE+++  R ++PD+V FL+VL ACS   +  D   ++F  M
Sbjct: 541 TALISGYAQHGDYESVIKLFEEMEKER-IKPDAVIFLSVLTACSRNRM-VDMGRQFFNMM 598

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
            KD+ I+P  EH   M+ ++G+ G +  A+ ++  +  G      ++LL A     ++++
Sbjct: 599 IKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILARIPGGPGVSALQSLLGACRTHGNVEM 658

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           A   A +++K E      YV++ NLY   G+W+  + +R  MRERG+ KE G SW++V N
Sbjct: 659 AERIANDLMKKEPLESGPYVLMSNLYAQKGDWEKVAKVRKEMRERGVMKEIGFSWVDVGN 718

Query: 517 VAA 519
             A
Sbjct: 719 FGA 721



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 125/497 (25%), Positives = 229/497 (46%), Gaps = 59/497 (11%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +E+ L   L+A    G+    +Q+H +++ SGF+S++ VS +LM  Y K   L  A  +F
Sbjct: 74  DEFTLVLALKACC--GFPKLGRQIHGFVISSGFVSHITVSNSLMNMYCKSGQLERAFSVF 131

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +  P +VSWN+++SG+ +S     AL+  + +  + +  D+ ++T+AL+ C       
Sbjct: 132 QNLHDPDIVSWNTILSGFEKS---ENALSFALRMNLNGVKFDSVTYTTALSFCLDGEEFL 188

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  +H+  +K   +  V + N L+ MY +   + DA  VF EM  +D +SW+++I   A
Sbjct: 189 FGWQLHTLALKCGFKGDVFVGNALVTMYSRWEHLVDARKVFDEMPSRDRVSWSAMITGYA 248

Query: 182 RNG------------------------------------NLELAFGFLHRLP-----NPD 200
           + G                                    NLEL    +H L         
Sbjct: 249 QEGDNGLQAILVFVQMVREGVKFDNVPITGALSVCGHERNLELG-KQIHCLAVKTGHETH 307

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
           T   N +I+  ++   IEDA  +   +   N  SW ++++ Y        A+ LF +M+ 
Sbjct: 308 TSVGNVLISTYSKCEIIEDAKAVFELINDRNVISWTTMISLYEEG-----AVSLFNKMRL 362

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             V  ++ TF  +L  I   + +  G+++H   IK    + + V ++L+ MY+K   ++ 
Sbjct: 363 DGVYPNDVTFIGLLHAITIRNMVEQGLMVHGLCIKADFVSELTVGNSLITMYAKFEFMQD 422

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  L  + +++WNA+I+GYA+N    + +E F  L  + + +P+  TF +VL A S
Sbjct: 423 ASRVFIELPYREIISWNALISGYAQNALCQEALEAF--LYAIMEYKPNEYTFGSVLNAIS 480

Query: 381 H-TDIPFDKVSEYFESMTK-DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
              DI           + K    + P +    +++ +  ++G +  +QR+  E    S  
Sbjct: 481 AGEDISLKHGQRCHSHLIKVGLNVDPII--SGALLDMYAKRGSIQESQRVFNETSKQSQ- 537

Query: 439 VVWRALLSASGACSDLD 455
             W AL+S      D +
Sbjct: 538 FAWTALISGYAQHGDYE 554



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 194/438 (44%), Gaps = 49/438 (11%)

Query: 47  FYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYS 106
           F+R   S    H +F + P P+  S+N ++  Y+      ++L  F    R  +  +A  
Sbjct: 19  FFR---SFQHDHNLFDQSPPPNAASFNRVLLNYLPRDGAFQSLRFFKNNFRWGLDGNADE 75

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
           FT  LA     G  +LG  IH  ++       + ++N L++MY K G +E A  VF  + 
Sbjct: 76  FTLVLALKACCGFPKLGRQIHGFVISSGFVSHITVSNSLMNMYCKSGQLERAFSVFQNLH 135

Query: 167 DKDIISWNSVIAASARNGNL------------------------------ELAFGF-LHR 195
           D DI+SWN++++   ++ N                               E  FG+ LH 
Sbjct: 136 DPDIVSWNTILSGFEKSENALSFALRMNLNGVKFDSVTYTTALSFCLDGEEFLFGWQLHT 195

Query: 196 LP-----NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR-NRVP 249
           L        D    N ++   +++  + DA  +   MPS +  SW++++TGY    +   
Sbjct: 196 LALKCGFKGDVFVGNALVTMYSRWEHLVDARKVFDEMPSRDRVSWSAMITGYAQEGDNGL 255

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
           +A+ +F +M  + V  D    +  LS       L  G  IH   +K G +    V + L+
Sbjct: 256 QAILVFVQMVREGVKFDNVPITGALSVCGHERNLELGKQIHCLAVKTGHETHTSVGNVLI 315

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
             YSKC  +E A ++F  +  +N+++W  MI+ Y         + LF +++ +  + P+ 
Sbjct: 316 STYSKCEIIEDAKAVFELINDRNVISWTTMISLYEEGA-----VSLFNKMR-LDGVYPND 369

Query: 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429
           VTF+ +L A +  ++    +  +   +  D+  + TV +  S+I +  +   +  A R+ 
Sbjct: 370 VTFIGLLHAITIRNMVEQGLMVHGLCIKADFVSELTVGN--SLITMYAKFEFMQDASRVF 427

Query: 430 RELGFGSYGVVWRALLSA 447
            EL +    + W AL+S 
Sbjct: 428 IELPYREI-ISWNALISG 444



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 116/235 (49%), Gaps = 9/235 (3%)

Query: 1   PNEYVLFHLLRASSDLGWD---TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
           PNEY    +L A S  G D    + Q+ H +++K G   +  +S AL+  Y K  S+ ++
Sbjct: 467 PNEYTFGSVLNAIS-AGEDISLKHGQRCHSHLIKVGLNVDPIISGALLDMYAKRGSIQES 525

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
            ++F E  + S  +W +LISGY Q G Y   + LF E+E+  I  DA  F S L AC + 
Sbjct: 526 QRVFNETSKQSQFAWTALISGYAQHGDYESVIKLFEEMEKERIKPDAVIFLSVLTACSRN 585

Query: 118 GSLQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNS 175
             + +G    + ++K + +E      +C++DM G+ G +E+A  +   +     +S   S
Sbjct: 586 RMVDMGRQFFNMMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILARIPGGPGVSALQS 645

Query: 176 VIAASARNGNLELAFGFLHRLPNPDTIS---YNEVINGIAQFGDIEDAIMILSSM 227
           ++ A   +GN+E+A    + L   + +    Y  + N  AQ GD E    +   M
Sbjct: 646 LLGACRTHGNVEMAERIANDLMKKEPLESGPYVLMSNLYAQKGDWEKVAKVRKEM 700


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 162/535 (30%), Positives = 279/535 (52%), Gaps = 41/535 (7%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           Y   LH + +K+G +++VFV +AL+  Y KI  +  + K+F E+P  + V+W ++I+G V
Sbjct: 134 YGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLV 193

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           ++G     L  F  + RS++  D+Y++  AL A    G+L  G +IH++ +K   +    
Sbjct: 194 RAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSF 253

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-- 198
           +AN L  MY KCG ++  +  F +M   D++SW +++ A  + G  +       R+    
Sbjct: 254 VANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASN 313

Query: 199 --PDTISYNEVINGIAQF-----------------------------------GDIEDAI 221
             P+  +++ VI+  A F                                   G++    
Sbjct: 314 VIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVS 373

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +  SM   +  +W++I+  Y       EA      M+S+    +E+  +++LS    ++
Sbjct: 374 KVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMA 433

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  +H+ V+  GL+ + +V SAL+ MY+KCG +  A  +F    + ++++W AMI+
Sbjct: 434 ILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMIS 493

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYA +G   + IELFE ++ V  L+PDSVTF+ VL ACSH  +  D    YF SM+KDY 
Sbjct: 494 GYAEHGHSQEAIELFENIQKV-GLRPDSVTFIGVLTACSHAGM-VDLGFYYFNSMSKDYH 551

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I P+ EH   MI L+ + G +  A+ +IR +      VVW  LL A     D+D  + +A
Sbjct: 552 ITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAA 611

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           AEV+KL+ +    ++ L N++ + G W  A+ +R  M+ +G+ KE G S ++V++
Sbjct: 612 AEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKD 666



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 199/438 (45%), Gaps = 44/438 (10%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE-RSEIYADAYSFT 108
           K N L DA  +F ++PQ   VSW ++ISGYV S    +AL LF ++  +SE+  D +  +
Sbjct: 61  KTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLS 120

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
             L  CG   +   G  +H   VK  L   V + + L+DMY K G +  +  VF EM  +
Sbjct: 121 LGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTR 180

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRLPNP----DTISY-------------------- 204
           + ++W +VI    R G  E    +   +       D+ +Y                    
Sbjct: 181 NAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIH 240

Query: 205 ---------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
                          N +     + G ++  +     M + +  SW +I+T Y+   +  
Sbjct: 241 TQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKED 300

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
             L  F  M++ +V  +EYTFS ++S  A  + L WG  +H+ V+  G   ++ VA++++
Sbjct: 301 CGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIM 360

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
            +YSKCG++     +F S+  ++++TW+ +I  Y++ G   +  E   ++++    +P+ 
Sbjct: 361 TLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRS-EGPKPNE 419

Query: 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429
               +VL+ C    I   +  +   +     G++ T   C ++I +  + G +  A ++ 
Sbjct: 420 FALASVLSVCGSMAIL--EQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIF 477

Query: 430 RELGFGSYGVVWRALLSA 447
            +  +    + W A++S 
Sbjct: 478 MD-SWKDDIISWTAMISG 494



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 182/411 (44%), Gaps = 42/411 (10%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV 69
           L+AS+D G   + + +H   LK GF  N FV+ +L   Y K   L      F ++    V
Sbjct: 224 LKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDV 283

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
           VSW ++++ Y+Q GK    L  F  +  S +  + Y+F++ ++ C     L+ G  +H+ 
Sbjct: 284 VSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAH 343

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
           ++       + +AN ++ +Y KCG +     VF  M  +DII+W+++IAA ++ G  E A
Sbjct: 344 VLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEA 403

Query: 190 FGFLHRL----PNPDTISYNEVIN---------------------GI------------- 211
           F +L R+    P P+  +   V++                     G+             
Sbjct: 404 FEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIM 463

Query: 212 -AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
            A+ G I +A  I       +  SW ++++GY       EA+ LF  +Q   +  D  TF
Sbjct: 464 YAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTF 523

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSL- 328
             +L+  +    +  G    + + K   +  S      ++D+  + G++  A+++ RS+ 
Sbjct: 524 IGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMP 583

Query: 329 CRKNLVTWNAMITGYARNGDL-TKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            + + V W+ ++     +GD+        E LK   +     +T  N+ AA
Sbjct: 584 IQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIFAA 634



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 150/329 (45%), Gaps = 27/329 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNEY    ++   ++     + +QLH ++L  GF++ + V+ ++M  Y K   LA   K+
Sbjct: 316 PNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKV 375

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    +++W+++I+ Y Q G   +A      +       + ++  S L+ CG +  L
Sbjct: 376 FCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAIL 435

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H+ ++   LE+  ++ + LI MY KCGS+ +A  +F +    DIISW ++I+  
Sbjct: 436 EQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGY 495

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A +G+ + A      +      PD++++  V+   +  G ++      +SM      +P+
Sbjct: 496 AEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPS 555

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  ++       R+ +A  L   ++S  +  D+               + W  L+ +
Sbjct: 556 KEHYGCMIDLLCRAGRLHDAETL---IRSMPIQWDD---------------VVWSTLLRA 597

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEI 320
           C I   +D     A+ +L +   C    I
Sbjct: 598 CRIHGDVDCGQRAAAEVLKLDPNCAGTHI 626



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           D    N  +  + +   ++DA  +   +P  +  SW +I++GYVN +   EAL LF +M+
Sbjct: 48  DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMR 107

Query: 260 -SKDVPMDEYTFSTMLSGIA-GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
              ++ +D +  S  L     GL+ L +G  +H   +K GL  S+ V SALLDMY K G+
Sbjct: 108 LQSELRIDPFLLSLGLKTCGLGLNYL-YGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGE 166

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNG 347
           +  +  +F  +  +N VTW A+ITG  R G
Sbjct: 167 IGRSCKVFDEMPTRNAVTWTAVITGLVRAG 196


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 165/551 (29%), Positives = 282/551 (51%), Gaps = 41/551 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N +V    L+    L     C  LH  I+K G+ SN FV  AL+  Y    S+  A  +F
Sbjct: 145 NPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVF 204

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             I    +V W  ++S YV++G +  +L L   +       + Y+F +AL A   LG+  
Sbjct: 205 EGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFH 264

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
              ++H +I+K   E    +   L+ +Y + G + DA  VF EM   D++ W+ +IA   
Sbjct: 265 FAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFC 324

Query: 182 RNGNLELAFGFLHRL------PNPDTISY------------------------------- 204
           +NG    A     R+      PN  T+S                                
Sbjct: 325 QNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVY 384

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +I+  A+   ++ A+ + + + S N  SWN+++ GY N     +AL++F E     
Sbjct: 385 VSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQ 444

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V + E TFS+ L   A L+++  G+ +H   IK      + V+++L+DMY+KCG +++A 
Sbjct: 445 VSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQ 504

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           ++F  +   ++ +WNA+I+GY+ +G   + + +F+ +K   D +P+ +TFL VL+ CS+ 
Sbjct: 505 TVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKG-SDCKPNGLTFLGVLSGCSNA 563

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  D+  + FESM  D+GI+P +EH   M+RL G+ G++ +A  +I  + +    ++WR
Sbjct: 564 GL-IDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWR 622

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
           A+LSAS    + + AR SA E++K+    +  YV+L N+Y     W   + +R  M+E+G
Sbjct: 623 AMLSASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYAGAKQWANVASIRKSMKEKG 682

Query: 503 LRKEAGCSWIE 513
           ++KE G SWIE
Sbjct: 683 VKKEPGLSWIE 693



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 184/398 (46%), Gaps = 46/398 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +HC ILK G   ++F +  L+  Y K     DA  +F E+P+ + VS+ +L  GY   
Sbjct: 69  KAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYA-- 126

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
              +  + L+  L R     + + FTS L     L   ++   +HS IVK   +    + 
Sbjct: 127 --CQDPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVG 184

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR------L 196
             LI+ Y  CGSV+ A  VF  ++ KDI+ W  +++    NG  E +   L R      +
Sbjct: 185 AALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFM 244

Query: 197 PNPDTIS-------------YNEVING--------------------IAQFGDIEDAIMI 223
           PN  T               + + ++G                      Q GD+ DA  +
Sbjct: 245 PNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKV 304

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
            + MP  +   W+ ++  +       +A+ +F  M+   V  +E+T S++L+G A     
Sbjct: 305 FNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCS 364

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H  V+K G D  + V++AL+D+Y+KC +++ A  +F  L  KN+V+WN +I GY
Sbjct: 365 GLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGY 424

Query: 344 ARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVLAACS 380
              G+  K + +F E L+    +    VTF + L AC+
Sbjct: 425 ENLGEGGKALNMFREALRN--QVSVTEVTFSSALGACA 460



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 183/383 (47%), Gaps = 41/383 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y     L+AS  LG   + + +H  ILK+ +  +  V   L+  Y ++  ++DA K+
Sbjct: 245 PNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKV 304

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+  VV W+ +I+ + Q+G   KA+++F+ +    +  + ++ +S L  C      
Sbjct: 305 FNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCS 364

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI--- 177
            LG  +H  +VK   +  V ++N LID+Y KC  ++ A+ +F E+  K+++SWN+VI   
Sbjct: 365 GLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGY 424

Query: 178 --------------------------------AASARNGNLELAF---GFLHRLPNPDTI 202
                                            A A   ++EL     G   +  N   +
Sbjct: 425 ENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRV 484

Query: 203 SY-NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           +  N +I+  A+ GDI+ A  + + M + + +SWN++++GY       +AL +F  M+  
Sbjct: 485 AVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGS 544

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           D   +  TF  +LSG +    +  G     S +   G++  +   + ++ ++ + GQ++ 
Sbjct: 545 DCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDK 604

Query: 321 ADSMFRSLC-RKNLVTWNAMITG 342
           A ++   +    +++ W AM++ 
Sbjct: 605 AMNLIEGIPYEPSVMIWRAMLSA 627



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 110/233 (47%), Gaps = 7/233 (3%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           D  + N ++N   + G  +DA+ +   MP  N+ S+ ++  GY  ++ V     L+  + 
Sbjct: 83  DLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYACQDPVG----LYSRLH 138

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            +   ++ + F++ L     L        +HS ++K G D++  V +AL++ YS CG V+
Sbjct: 139 REGHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVD 198

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A S+F  +  K++V W  +++ Y  NG     ++L  ++  +    P++ TF   L A 
Sbjct: 199 SARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRM-GMDGFMPNNYTFDTALKAS 257

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
                     S + + +   Y + P V     +++L  Q G++  A ++  E+
Sbjct: 258 IGLGAFHFAKSVHGQILKTCYELDPRVG--VGLLQLYTQLGDMSDAFKVFNEM 308


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 162/519 (31%), Positives = 272/519 (52%), Gaps = 38/519 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+ L  +L+A S      +    H   +K G++  VFV  AL+       SL D+ ++
Sbjct: 105 PNEFTLPFVLKACSRARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRL 164

Query: 61  FVEI-PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F E+ P  +VVSWN++I G  Q+G+  +A  LF E+ R  + AD ++F S L  C + G+
Sbjct: 165 FAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGN 224

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L++G  +H  ++       +++ N L+DMYGKCG +  A   F  M  K+++SW S++ A
Sbjct: 225 LEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCA 284

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
                                          +A+ G ++ A      MP  N  SWN+++
Sbjct: 285 -------------------------------LAKHGSVDAARDWFEQMPERNIISWNAMI 313

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL- 298
           + YV   R PE L L+  M+S  +  DE T + +LS       L  G +IH C I+    
Sbjct: 314 SCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIH-CYIQDSFS 372

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
           D  + V ++L+DMY++CGQV+ + S+F  +  KN ++WN +I   A +G   + +  F  
Sbjct: 373 DPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAVMFFRA 432

Query: 359 LKTVRD-LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417
           +  V D   PD +TF+ +L+ACSH  +  D    YF++M   Y +KP VEH   M+ L+G
Sbjct: 433 M--VSDAFSPDEITFVGLLSACSHGGLLEDG-QYYFKAMRHIYNVKPEVEHYACMVDLLG 489

Query: 418 QKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477
           + G + +A  +I+++      VVW AL+ A      +++ +++  ++++LEG +  ++V+
Sbjct: 490 RHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQLLELEGINGGLFVL 549

Query: 478 LCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           + NL      W+    +R  MR+RG +K+ G S IE+ N
Sbjct: 550 ISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVSSIEINN 588



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 173/414 (41%), Gaps = 72/414 (17%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF----------------------- 61
           +HC++L SG   ++ +  AL+  Y K   L  AH+ F                       
Sbjct: 231 VHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGS 290

Query: 62  --------VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
                    ++P+ +++SWN++IS YVQ G++ + L L+  ++   +  D  +    L+ 
Sbjct: 291 VDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSV 350

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISW 173
            GQ G L  G  IH  I     + GV + N LIDMY +CG V+ +I +F EM +K+ ISW
Sbjct: 351 HGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISW 410

Query: 174 NSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMP- 228
           N +I A A +G  + A  F   +     +PD I++  +++  +  G +ED      +M  
Sbjct: 411 NVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRH 470

Query: 229 ----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
                P    +  ++        + +A+ L      KD+PM                 + 
Sbjct: 471 IYNVKPEVEHYACMVDLLGRHGHLAKAVDLI-----KDMPMKP-------------DVVV 512

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
           WG LI +C I   ++   +    LL++    G + +  S      R+    W        
Sbjct: 513 WGALIGACRIHGHVEIGKLAIKQLLELEGINGGLFVLISNLLYETRQ----WE------- 561

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
              D+ ++ +L     T +D+   S+   N +      DI  +  S+ + ++ +
Sbjct: 562 ---DMKRLRKLMRDRGTKKDMGVSSIEINNSIHEFGVEDIRHESSSQIYAAVDQ 612


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 166/553 (30%), Positives = 294/553 (53%), Gaps = 42/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +L+A +D       +++H  ++K GF S+VFV   L+ FY     L DA ++
Sbjct: 39  PDDHTFPFVLKACADAFEVRKGREVHGSVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRV 98

Query: 61  FVEIPQPSVVSWNSLISGYVQSG-KYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F E+P+  +VSWN++I  +  +G  YR AL++F  +    +  ++ + +S L    +L  
Sbjct: 99  FDEMPEKDLVSWNTMIGVFSVNGWHYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEF 158

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            + G  +H   ++  LE  + IAN LIDMY K G   +A  VF ++  K+++SWN++IA 
Sbjct: 159 FKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIAN 218

Query: 180 SARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMI------------ 223
            A+N    +A G + ++ +    P+++++  V+   A+ G +     I            
Sbjct: 219 FAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGCAFD 278

Query: 224 ------LSSMPSP----------------NSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                 L+ M +                 +  S+N ++ G+   +   E+L LF EMQ  
Sbjct: 279 LFVSNALTDMYAKSGHLKLARNVFDTSLRDEVSYNILIVGHSQTSDCSESLSLFSEMQLM 338

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D  +F   LS  A L+A+  G  IH  ++++     + VA++LLD Y+KCG++ +A
Sbjct: 339 GLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLA 398

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            ++F  +  K++ +WN MI GY   G+L   I+LFE ++   D++ DSV+F+ VL+ACSH
Sbjct: 399 RNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLFENMRK-DDVEYDSVSFIAVLSACSH 457

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  +K  +YF+ + K  GI+PT  H   M+ L+G+ G +  A  +I+ L       +W
Sbjct: 458 GGL-LEKGRKYFDEL-KARGIEPTQMHYACMVDLLGRAGLMEEAAELIKGLPIVPDANIW 515

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL A     +L++A  +A  + +L+ +    Y +L N+Y   G WD A+ +R  M+ R
Sbjct: 516 GALLGACRIYGNLELAAWAAEHLFELKPEHSGYYTLLSNMYAETGRWDEANRIRELMKSR 575

Query: 502 GLRKEAGCSWIEV 514
           G++K  GCSW+++
Sbjct: 576 GVKKSPGCSWVQI 588



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 166/350 (47%), Gaps = 43/350 (12%)

Query: 72  WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIV 131
           WN+LI GY  +G     L ++ ++ R  +  D ++F   L AC     ++ G  +H  +V
Sbjct: 10  WNTLIRGYSIAG-VGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVV 68

Query: 132 KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-NLELAF 190
           K   E  V + N L+  YG CG + DA  VF EM +KD++SWN++I   + NG +   A 
Sbjct: 69  KLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDAL 128

Query: 191 GFLHRL------PNPDTIS---------------------------------YNEVINGI 211
                +      PN  TIS                                  N +I+  
Sbjct: 129 DMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMY 188

Query: 212 AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271
           A+ G   +A  +   + + N  SWN+++  +        A+ L  +MQ      +  TF+
Sbjct: 189 AKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFT 248

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
            +L   A +  +  G  IH+  I  G    + V++AL DMY+K G +++A ++F +  R 
Sbjct: 249 NVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDTSLRD 308

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             V++N +I G+++  D ++ + LF +++ +  L+ D+V+F+  L+AC++
Sbjct: 309 E-VSYNILIVGHSQTSDCSESLSLFSEMQLM-GLKQDNVSFMGALSACAN 356



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 12/216 (5%)

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
           WN+++ GY +   V   L ++ +M    V  D++TF  +L   A    +  G  +H  V+
Sbjct: 10  WNTLIRGY-SIAGVGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVV 68

Query: 295 KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG-DLTKVI 353
           K G ++ + V + LL  Y  CG +  A  +F  +  K+LV+WN MI  ++ NG      +
Sbjct: 69  KLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDAL 128

Query: 354 ELFEQLKTVRDLQPDSVT---FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           ++F +L     L+P+S+T   FL VL      ++ F K        +   G++  +    
Sbjct: 129 DMF-RLMIDEGLKPNSITISSFLPVL-----VELEFFKAGREVHGSSIRMGLESDIFIAN 182

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
           S+I +  + G    A  +  +L   +  V W A+++
Sbjct: 183 SLIDMYAKSGHSTEASNVFYKLDAKNV-VSWNAMIA 217


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 162/490 (33%), Positives = 251/490 (51%), Gaps = 41/490 (8%)

Query: 27  CYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYR 86
           C + +S    ++     LMG + +   L DA  +F ++P    +SWN++ISGY Q G   
Sbjct: 193 CLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLS 252

Query: 87  KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
           +A  LF E                                       S  R V     ++
Sbjct: 253 QARRLFDE---------------------------------------SPTRDVFTWTAMV 273

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNE 206
             Y + G +++A   F EM +K+ +S+N++IA   +   +++A      +P  +  S+N 
Sbjct: 274 SGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNT 333

Query: 207 VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
           +I G  Q GDI  A      MP  +  SW +I+ GY       EAL++F E++     ++
Sbjct: 334 MITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLN 393

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
             TF   LS  A ++AL  G  IH   +K G      V +ALL MY KCG ++ A+  F 
Sbjct: 394 RATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFE 453

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
            +  K++V+WN M+ GYAR+G   + + +FE +KT   ++PD +T + VL+ACSHT +  
Sbjct: 454 GIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTA-GVKPDEITMVGVLSACSHTGL-L 511

Query: 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
           D+ +EYF SMTKDYG+ PT +H   MI L+G+ G +  AQ +IR + F      W ALL 
Sbjct: 512 DRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLG 571

Query: 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506
           AS    + ++   +A  V K+E  +  +YV+L NLY + G W  A  MR+ MR+ G++K 
Sbjct: 572 ASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKV 631

Query: 507 AGCSWIEVEN 516
            G SW+EV+N
Sbjct: 632 PGYSWVEVQN 641



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 204/406 (50%), Gaps = 30/406 (7%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A  +F  +P+ S VS+N++ISGY+++ K+  A NLF ++   ++++     T  +  C  
Sbjct: 68  ALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNC-- 125

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
               +LG A   ++     E+ VV  N L+  Y + G V++A  VF  M +K+ ISWN +
Sbjct: 126 ----RLGDA--RRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGL 179

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
           +AA   NG +E A        + D IS+N ++ G  +   + DA  +   MP  ++ SWN
Sbjct: 180 LAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWN 239

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS-CVIK 295
           ++++GY     + +A  LF E  ++DV    +T++ M+SG      +  GML  +     
Sbjct: 240 TMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVSGY-----VQNGMLDEAKTFFD 290

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
           +  + + V  +A++  Y +  +++IA  +F S+  +N+ +WN MITGY + GD+ +  + 
Sbjct: 291 EMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKF 350

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC----CS 411
           F+ +      Q D V++  ++A  + +    + ++ + E       +      C    C+
Sbjct: 351 FDMMP-----QRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCA 405

Query: 412 MIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
            I  + + G+    Q +  ++G+G+   V  ALL+    C  +D A
Sbjct: 406 DIAAL-ELGKQIHGQAV--KMGYGTGCFVGNALLAMYFKCGSIDEA 448



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 90/163 (55%), Gaps = 8/163 (4%)

Query: 195 RLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
           R+ +PD + +N+ I+   + G  + A+ + ++MP  +S S+N++++GY+  ++   A +L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F +M  +D+    ++++ ML+G      L     +   + ++     +V  ++LL  Y++
Sbjct: 103 FDQMPERDL----FSWNVMLTGYVRNCRLGDARRLFDLMPEK----DVVSWNSLLSGYAQ 154

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
            G V+ A  +F ++  KN ++WN ++  Y  NG + +   LFE
Sbjct: 155 NGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFE 197


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 151/499 (30%), Positives = 265/499 (53%), Gaps = 40/499 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  + +S    +V + TAL+  Y K     DA ++F  +P+ +VVSWNSLI+ Y Q+
Sbjct: 171 EQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQN 230

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS-LERGVVI 141
           G   +AL LFVE+  +  + D  + +S ++AC  L + + G  +H+ +VK   L   +V+
Sbjct: 231 GPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVL 290

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
            N L+DMY KCG   +A  +F  M  + ++S  S++A                       
Sbjct: 291 NNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILA----------------------- 327

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                   G A+  ++EDA ++ S M   N  +WN ++  Y       EA+ LF +++  
Sbjct: 328 --------GYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRD 379

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL------DASIVVASALLDMYSKC 315
            +    YT+  +L+    ++ L  G   H  V+K+G       ++ + V ++L+DMY K 
Sbjct: 380 SIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKT 439

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G ++    +F  +  ++ V+WNAMI GYA+NG     + LFE++    +  PDSVT + V
Sbjct: 440 GSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNE-NPDSVTMIGV 498

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L+AC H+ +  D+   +F  MT+D+GI P+ +H   M+ L+G+ G +  A+ +I+++   
Sbjct: 499 LSACGHSGL-VDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTE 557

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
              V+W +LL A     ++++   +A  + +L+ ++   YV+L N+Y   G W     +R
Sbjct: 558 PDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVR 617

Query: 496 NFMRERGLRKEAGCSWIEV 514
             M++RG+ K+ GCSWIE+
Sbjct: 618 RSMKDRGVSKQPGCSWIEI 636



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 182/415 (43%), Gaps = 83/415 (20%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65
           L  LLR++  L      +  H  +LKS      F+   L+  Y ++  L +A ++F  IP
Sbjct: 23  LADLLRSAPSL---PGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIP 79

Query: 66  QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA 125
             +  S+N+L+S Y + G+  +A  LF  +       D  S+ + +AA  + G       
Sbjct: 80  LRNTFSYNALLSAYARLGRPDEARALFEAIPDP----DQCSYNAVVAALARHGR------ 129

Query: 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII----SWNSVIAASA 181
                                      G   DA+     M   D +    S+ S ++A A
Sbjct: 130 ---------------------------GHAGDALRFLAAMHADDFVLNAYSFASALSACA 162

Query: 182 RNGNL---ELAFGFLHRLPNPDTISY-NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
              +L   E   G + R P+ D +     +++  A+     DA  +  +MP  N  SWNS
Sbjct: 163 AEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNS 222

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           ++T Y     V EAL LF EM +     DE T S+++S  AGL+A   G  +H+ ++K+ 
Sbjct: 223 LITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRD 282

Query: 298 -LDASIVVASALLDMYSKCGQ-------------------------------VEIADSMF 325
            L   +V+ +AL+DMY+KCG+                               VE A  +F
Sbjct: 283 RLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVF 342

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAAC 379
             +  KN++ WN +I  YA+NG+  + I LF QLK  RD + P   T+ NVL AC
Sbjct: 343 SQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLK--RDSIWPTHYTYGNVLNAC 395



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 112/209 (53%), Gaps = 3/209 (1%)

Query: 174 NSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS 233
           N++++  AR G L  A      +P  +T SYN +++  A+ G  ++A  +  ++P P+  
Sbjct: 56  NTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQC 115

Query: 234 SWNSILTGYVNRNR--VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
           S+N+++       R    +AL     M + D  ++ Y+F++ LS  A    L  G  +H 
Sbjct: 116 SYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHG 175

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
            V +      + + +AL+DMY+KC +   A  +F ++  +N+V+WN++IT Y +NG + +
Sbjct: 176 LVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGE 235

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            + LF ++       PD VT  +V++AC+
Sbjct: 236 ALVLFVEMMAT-GFFPDEVTLSSVMSACA 263



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 138/324 (42%), Gaps = 69/324 (21%)

Query: 18  WDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLIS 77
           W+  C      I  S    +V   T+++  Y K  ++ DA  +F ++ + +V++WN LI+
Sbjct: 305 WEARC------IFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIA 358

Query: 78  GYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK----- 132
            Y Q+G+  +A+ LFV+L+R  I+   Y++ + L ACG +  LQLG   H  ++K     
Sbjct: 359 AYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRF 418

Query: 133 -YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG 191
            +  E  V + N L+DMY K GS++D   VF  M  +D +SW                  
Sbjct: 419 DFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSW------------------ 460

Query: 192 FLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM----PSPNSSSWNSIL-----TGY 242
                        N +I G AQ G  +DA+ +   M     +P+S +   +L     +G 
Sbjct: 461 -------------NAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGL 507

Query: 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG---------------LSALTWGM 287
           V+  R     H   E        D YT    L G AG                 ++ W  
Sbjct: 508 VDEGR--RHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWAS 565

Query: 288 LIHSCVIKQGLDASIVVASALLDM 311
           L+ +C + + ++     A  L ++
Sbjct: 566 LLGACRLHKNVELGERTAGRLFEL 589



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 112/238 (47%), Gaps = 11/238 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL------SNVFVSTALMGFYRKINSL 54
           P  Y   ++L A  ++      QQ H ++LK GF       S+VFV  +L+  Y K  S+
Sbjct: 383 PTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSI 442

Query: 55  ADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC 114
            D  K+F  +     VSWN++I GY Q+G+ + AL+LF  +  S    D+ +    L+AC
Sbjct: 443 DDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSAC 502

Query: 115 GQLGSLQLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIIS 172
           G  G +  G    H     + +        C++D+ G+ G +++A  +  +M  + D + 
Sbjct: 503 GHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVL 562

Query: 173 WNSVIAASARNGNLELA---FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           W S++ A   + N+EL     G L  L   ++  Y  + N  A+ G   D   +  SM
Sbjct: 563 WASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSM 620


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 167/530 (31%), Positives = 281/530 (53%), Gaps = 39/530 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H  ++K GF+S+V+V  +L+  Y K+    DA K+F E+P+  +VSWNS+ISGY+  
Sbjct: 150 KKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLAL 209

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG-VVI 141
           G    +L LF E+ +     D +S  SAL AC  + S ++G  IH   V+  +E G V++
Sbjct: 210 GDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMV 269

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP---- 197
              ++DMY K G V  A  +F  MI ++I++WN +I   ARNG +  AF    ++     
Sbjct: 270 MTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNG 329

Query: 198 -NPDTIS-----------YNEVINGIA--------------------QFGDIEDAIMILS 225
             PD I+               I+G A                    + G ++ A +I  
Sbjct: 330 LQPDVITSINLLPASAILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFD 389

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
            M   N  SWNSI+  YV   +   AL LF E+    +  D  T +++L   A   +L+ 
Sbjct: 390 RMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSE 449

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  IH+ ++K    ++ ++ ++L+ MY+ CG +E A   F  +  K++V+WN++I  YA 
Sbjct: 450 GREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAV 509

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
           +G     + LF ++   R + P+  TF ++LAACS + +  D+  EYFESM ++YGI P 
Sbjct: 510 HGFGRISVWLFSEMIASR-VNPNKSTFASLLAACSISGM-VDEGWEYFESMKREYGIDPG 567

Query: 406 VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465
           +EH   M+ L+G+ G    A+R + E+ F     +W +LL+AS    D+ +A  +A ++ 
Sbjct: 568 IEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIF 627

Query: 466 KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           K+E D+   YV+L N+Y   G W+  + ++  M  +G+ + +  S +E +
Sbjct: 628 KMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAK 677



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 181/385 (47%), Gaps = 57/385 (14%)

Query: 40  VSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE 99
           ++ AL GF      + DA ++F E+ +     WN +I G+   G Y +A+  +  +  + 
Sbjct: 67  LTRALRGFADS-RLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAG 125

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159
           + AD +++   + +   + SL+ G  IH+ ++K      V + N LI +Y K G   DA 
Sbjct: 126 VKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAE 185

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGF--------------------------- 192
            VF EM ++DI+SWNS+I+     G L L  GF                           
Sbjct: 186 KVFEEMPERDIVSWNSMIS-----GYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGA 240

Query: 193 ------------LH------RLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSS 234
                       +H      R+   D +    +++  +++G++  A  I + M   N  +
Sbjct: 241 CSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVA 300

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKD-VPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           WN ++  Y    RV +A   F +M  ++ +  D  T   +L      SA+  G  IH   
Sbjct: 301 WNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPA----SAILEGRTIHGYA 356

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
           +++G    +V+ +AL+DMY +CGQ++ A+ +F  +  KN+++WN++I  Y +NG     +
Sbjct: 357 MRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSAL 416

Query: 354 ELFEQLKTVRDLQPDSVTFLNVLAA 378
           ELF++L     L PDS T  ++L A
Sbjct: 417 ELFQELWD-SSLVPDSTTIASILPA 440



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 103/184 (55%), Gaps = 4/184 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+     +LL AS+ L   T    +H Y ++ GFL ++ + TAL+  Y +   L  A  +
Sbjct: 332 PDVITSINLLPASAILEGRT----IHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVI 387

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + + +V+SWNS+I+ YVQ+GK   AL LF EL  S +  D+ +  S L A  +  SL
Sbjct: 388 FDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSL 447

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH+ IVK       +I N L+ MY  CG +EDA   F  ++ KD++SWNS+I A 
Sbjct: 448 SEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAY 507

Query: 181 ARNG 184
           A +G
Sbjct: 508 AVHG 511



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 106/217 (48%), Gaps = 14/217 (6%)

Query: 182 RNGNLELAF----GFLHRLPNPDTISYNEVIN---------GIAQFGDIEDAIMILSSMP 228
           RNGN  L F        RL   D     + +N         G A    +EDA+ +   M 
Sbjct: 32  RNGNRNLEFDSGISKPARLVLRDRYKVTKQVNDPALTRALRGFADSRLMEDALQLFDEMN 91

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             ++  WN ++ G+ +     EA+  +  M    V  D +T+  ++  +AG+S+L  G  
Sbjct: 92  KADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKK 151

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           IH+ VIK G  + + V ++L+ +Y K G    A+ +F  +  +++V+WN+MI+GY   GD
Sbjct: 152 IHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGD 211

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
               + LF+++      +PD  + ++ L ACSH   P
Sbjct: 212 GFSSLMLFKEMLKC-GFKPDRFSTMSALGACSHVYSP 247


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 157/473 (33%), Positives = 256/473 (54%), Gaps = 42/473 (8%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD 103
           LMG Y +   L DA  +F  +P    +SWN +I+GY Q+G   +A  LF EL       D
Sbjct: 221 LMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELP----IRD 276

Query: 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
            +++T+ ++     G +Q GM                              +++A  +F 
Sbjct: 277 VFAWTAMVS-----GFVQNGM------------------------------LDEATRIFE 301

Query: 164 EMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMI 223
           EM +K+ +SWN++IA   ++  +E A     ++P+ +T S+N ++ G AQ G+I+ A ++
Sbjct: 302 EMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKIL 361

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              MP  +  SW ++++GY    +  EALHLF +M+     ++    +  LS  A ++AL
Sbjct: 362 FDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAAL 421

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H  ++K G     +  +ALL MY KCG +E A  +F  +  K++V+WN MI GY
Sbjct: 422 ELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGY 481

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           AR+G   + + LFE +K    ++PD VT + VL+ACSHT +  DK  EYF SM ++YGI 
Sbjct: 482 ARHGFGKEALALFESMKMT--IKPDDVTLVGVLSACSHTGL-VDKGMEYFNSMYQNYGIT 538

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
              +H   MI L+G+ G +  A  +++ + F      W ALL AS    D ++   +A +
Sbjct: 539 ANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEK 598

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           V ++E D+  +YV+L NLY + G W     MR+ MR++G++K  G SW+E++N
Sbjct: 599 VFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQN 651



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 167/332 (50%), Gaps = 23/332 (6%)

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
           I    +V WN  IS Y++ G+   AL++F  + R        + T      G L + +  
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRS------TVTYNAMISGYLSNNKFD 108

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
            A   K+ +   +R ++  N ++  Y K G++  A  +F +M +KD++SWN++++  A+N
Sbjct: 109 CA--RKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166

Query: 184 GNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYV 243
           G +E A     ++   + IS+N +++   Q G IEDA  +  S       SWN ++ GYV
Sbjct: 167 GFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYV 226

Query: 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV 303
            + R+ +A  LF  M  +    D+ +++ M++G A       G+L  +  + + L    V
Sbjct: 227 RKKRLDDARSLFDRMPVR----DKISWNIMITGYA-----QNGLLSEARRLFEELPIRDV 277

Query: 304 VA-SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
            A +A++  + + G ++ A  +F  +  KN V+WNAMI GY ++  + K  ELF+Q+ + 
Sbjct: 278 FAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR 337

Query: 363 RDLQPDSVTFLNVLAACSHTD---IPFDKVSE 391
                +  T +   A C + D   I FD++ +
Sbjct: 338 NTSSWN--TMVTGYAQCGNIDQAKILFDEMPQ 367



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 3/169 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH  ++K+GF +      AL+  Y K  S+ +A  +F +I +  +VSWN++I+GY + 
Sbjct: 425 KQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARH 484

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA-IHSKIVKYSLERGVVI 141
           G  ++AL LF  ++ + I  D  +    L+AC   G +  GM   +S    Y +      
Sbjct: 485 GFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKH 543

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLELA 189
             C+ID+ G+ G +++A+ +   M    D  +W +++ AS  +G+ EL 
Sbjct: 544 YTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELG 592


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 162/490 (33%), Positives = 251/490 (51%), Gaps = 41/490 (8%)

Query: 27  CYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYR 86
           C + +S    ++     LMG + +   L DA  +F ++P    +SWN++ISGY Q G   
Sbjct: 193 CLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLS 252

Query: 87  KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
           +A  LF E                                       S  R V     ++
Sbjct: 253 QARRLFDE---------------------------------------SPTRDVFTWTAMV 273

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNE 206
             Y + G +++A   F EM +K+ +S+N++IA   +   +++A      +P  +  S+N 
Sbjct: 274 SGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNT 333

Query: 207 VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
           +I G  Q GDI  A      MP  +  SW +I+ GY       EAL++F E++     ++
Sbjct: 334 MITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLN 393

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
             TF   LS  A ++AL  G  IH   +K G      V +ALL MY KCG ++ A+  F 
Sbjct: 394 RATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFE 453

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
            +  K++V+WN M+ GYAR+G   + + +FE +KT   ++PD +T + VL+ACSHT +  
Sbjct: 454 GIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTA-GVKPDEITMVGVLSACSHTGL-L 511

Query: 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
           D+ +EYF SMTKDYG+ PT +H   MI L+G+ G +  AQ +IR + F      W ALL 
Sbjct: 512 DRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLG 571

Query: 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506
           AS    + ++   +A  V K+E  +  +YV+L NLY + G W  A  MR+ MR+ G++K 
Sbjct: 572 ASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKV 631

Query: 507 AGCSWIEVEN 516
            G SW+EV+N
Sbjct: 632 PGYSWVEVQN 641



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 204/406 (50%), Gaps = 30/406 (7%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A  +F  +P+ S VS+N++ISGY+++ K+  A NLF ++   ++++     T  +  C  
Sbjct: 68  ALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNC-- 125

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
               +LG A   ++     E+ VV  N L+  Y + G V++A  VF  M +K+ ISWN +
Sbjct: 126 ----RLGDA--RRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGL 179

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
           +AA   NG +E A        + D IS+N ++ G  +   + DA  +   MP  ++ SWN
Sbjct: 180 LAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWN 239

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS-CVIK 295
           ++++GY     + +A  LF E  ++DV    +T++ M+SG      +  GML  +     
Sbjct: 240 TMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVSGY-----VQNGMLDEAKTFFD 290

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
           +  + + V  +A++  Y +  +++IA  +F S+  +N+ +WN MITGY + GD+ +  + 
Sbjct: 291 EMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKF 350

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC----CS 411
           F+ +      Q D V++  ++A  + +    + ++ + E       +      C    C+
Sbjct: 351 FDMMP-----QRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCA 405

Query: 412 MIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
            I  + + G+    Q +  ++G+G+   V  ALL+    C  +D A
Sbjct: 406 DIAAL-ELGKQIHGQAV--KMGYGTGCFVGNALLAMYFKCGSIDEA 448



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 90/163 (55%), Gaps = 8/163 (4%)

Query: 195 RLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
           R+ +PD + +N+ I+   + G  + A+ + ++MP  +S S+N++++GY+  ++   A +L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F +M  +D+    ++++ ML+G      L     +   + ++     +V  ++LL  Y++
Sbjct: 103 FDQMPERDL----FSWNVMLTGYVRNCRLGDARRLFDLMPEK----DVVSWNSLLSGYAQ 154

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
            G V+ A  +F ++  KN ++WN ++  Y  NG + +   LFE
Sbjct: 155 NGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFE 197


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 161/498 (32%), Positives = 261/498 (52%), Gaps = 39/498 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA----HKMFVEIPQPSVVSWNSLISG 78
            Q H +ILKSG + + F ++ L+      NS A A    H +F  IP P+   WN++I  
Sbjct: 24  HQAHAHILKSGLIHSTFAASRLIASV-STNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRA 82

Query: 79  YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
           Y  S     AL +F ++  + +  D Y+FT AL +CG    ++ G  IH  ++K  L   
Sbjct: 83  YANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDD 142

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN 198
           + I N LI +Y  CG +EDA  +   M+++                              
Sbjct: 143 LFIQNTLIHLYASCGCIEDARHLLDRMLER------------------------------ 172

Query: 199 PDTISYNEVINGIAQFGDIEDAIM-ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
            D +S+N +++  A+ G +E A   +    P  N  SWN+++TGY +  R  E L LF +
Sbjct: 173 -DVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFED 231

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           MQ   V  D  T  ++LS  A + AL+ G  +H+ + K G+     VA+AL+DMYSKCG 
Sbjct: 232 MQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGS 291

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +E A  +F S  RK++ TWN++I+G + +G     +++F ++  V   +P+ VTF+ VL+
Sbjct: 292 IEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEM-LVEGFKPNEVTFVCVLS 350

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           ACS   +  D+  E F  M   +GI+PT+EH   M+ L+G+ G +  A+ +++++     
Sbjct: 351 ACSRAGL-LDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEA 409

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497
            VVW +LL A     ++++A   A ++++L       +V L N+Y S G W     +R  
Sbjct: 410 SVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQK 469

Query: 498 MRERGLRKEAGCSWIEVE 515
           MR +G+RK+ GCS IEV+
Sbjct: 470 MRAQGVRKDPGCSMIEVD 487



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 121/256 (47%), Gaps = 36/256 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++Y     L++          +Q+H ++LK+G   ++F+   L+  Y     + DA  +
Sbjct: 106 PDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHL 165

Query: 61  FVEIPQPSVVSWNSL--------------------------------ISGYVQSGKYRKA 88
              + +  VVSWN+L                                I+GY  +G++ + 
Sbjct: 166 LDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEV 225

Query: 89  LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
           L LF +++ + +  D  +  S L+AC  +G+L  G  +H+ I K  +     +A  L+DM
Sbjct: 226 LVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDM 285

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISY 204
           Y KCGS+E A+ VF   + KDI +WNS+I+  + +G+ + A      +      P+ +++
Sbjct: 286 YSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTF 345

Query: 205 NEVINGIAQFGDIEDA 220
             V++  ++ G +++ 
Sbjct: 346 VCVLSACSRAGLLDEG 361



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 117/232 (50%), Gaps = 5/232 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L A + +G  +  + +H YI K+G   + FV+TAL+  Y K  S+  A ++
Sbjct: 239 PDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEV 298

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +  + +WNS+ISG    G  + AL +F E+       +  +F   L+AC + G L
Sbjct: 299 FNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLL 358

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI-ISWNSVIA 178
             G  + + +V  + ++  +    C++D+ G+ G +E+A  +  +M  K+  + W S++ 
Sbjct: 359 DEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLG 418

Query: 179 ASARNGNLELAFGFLHR---LPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           A   +GN+ELA     +   L   ++ S+ ++ N  A  G  +D + +   M
Sbjct: 419 ACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKM 470


>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 696

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 182/567 (32%), Positives = 286/567 (50%), Gaps = 49/567 (8%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N + L   LR+++         QL    LKSG  +NVF ++AL+  Y K   + DA ++F
Sbjct: 92  NTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVF 151

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +P+ + VSWN+LI+GY +SG    AL LF+E+ER  +  D  +F S L A  +  S  
Sbjct: 152 DGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAV-EGPSCF 210

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIAAS 180
           L   +H KIVKY    G+ + N  I  Y +CGS++D+  +F  + D +D+ISWN+++ A 
Sbjct: 211 LMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAY 270

Query: 181 ARNGNLELAFGFLHRL-----PNPDTISYNEVINGIAQFGD------------------- 216
             NG  + A  F  R+      +PD  S+  +I+  ++ G                    
Sbjct: 271 THNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEG 330

Query: 217 --------------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
                               +EDA    +S+   ++ SWNS+LTGY       +AL  F 
Sbjct: 331 VTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFR 390

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
            M S++V  DEY FS  L   + L+ L  G  IH  VI  G  ++  V+S+L+ MYSK G
Sbjct: 391 CMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSG 450

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            ++ A   F    + + V WNAMI GYA++G    V  LF ++   R    D +TF+ ++
Sbjct: 451 IIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQ-RKAPLDHITFVGLI 509

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
            +CSH  +  D+ SE   +M   YG+   +EH    + L G+ G++ +A+++I  + F  
Sbjct: 510 TSCSHAGL-VDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEP 568

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
             +VW  LL A     ++++A   A+ +   E      YV+L ++Y+  G W   + ++ 
Sbjct: 569 DAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQR 628

Query: 497 FMRERGLRKEAGCSWIEVENVAAHSSN 523
            M++RGL K  G SWIEV+N   HS N
Sbjct: 629 VMKKRGLSKVPGWSWIEVKN-EVHSFN 654



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 172/376 (45%), Gaps = 45/376 (11%)

Query: 26  HCYILKSGFLSNVFVSTALMGFYRK-INSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           H  +LKSG  +    +  L  + R   + LA A ++F E+P+   VSWN+L++    SG 
Sbjct: 14  HASLLKSGVAAPTPWNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGA 73

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           + +A  L   +    + ++ ++  SAL +        +G  + S  +K  L   V  A+ 
Sbjct: 74  HPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASA 133

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PD 200
           L+D+Y KCG V DA  VF  M +++ +SWN++IA    +G++  A      +      PD
Sbjct: 134 LLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPD 193

Query: 201 TISY----------------------------------NEVINGIAQFGDIEDAIMILSS 226
             ++                                  N  I   +Q G ++D+  I   
Sbjct: 194 EATFASLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDG 253

Query: 227 MPS-PNSSSWNSILTGYVNRNRVPEALHLFGE-MQSKDVPMDEYTFSTMLSGIAGLSALT 284
           +    +  SWN++L  Y +     EA+  F   MQ   V  D Y+F++++S  +      
Sbjct: 254 IGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDD 313

Query: 285 -WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ---VEIADSMFRSLCRKNLVTWNAMI 340
             G +IH  VIK  L+    V +AL+ MY++  +   +E A   F SL  K+ V+WN+M+
Sbjct: 314 HQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSML 373

Query: 341 TGYARNGDLTKVIELF 356
           TGY+++G     ++ F
Sbjct: 374 TGYSQHGLSADALKFF 389



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 1/156 (0%)

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           +   +P  +  SWN++L         PEA  L   M ++ +  + +   + L   A    
Sbjct: 49  VFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARR 108

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
              G  + S  +K GL  ++  ASALLD+Y+KCG+V  A  +F  +  +N V+WNA+I G
Sbjct: 109 PAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAG 168

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           Y  +GD+   +ELF +++    L PD  TF ++L A
Sbjct: 169 YTESGDMASALELFLEMER-EGLAPDEATFASLLTA 203


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 163/555 (29%), Positives = 294/555 (52%), Gaps = 46/555 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A   L      +++HC + K GF  +VFV+ +L+  Y +   L  AHK+
Sbjct: 122 PDFYTFPPILKACVSL---VDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKV 178

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           FV++P   V SWN++ISG+ Q+G    AL +   ++   +  D  +  S L  C Q   +
Sbjct: 179 FVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDV 238

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G+ IH  ++K+ L+  V ++N LI+MY K G ++DA  VF +M  +D++SWNS+IAA 
Sbjct: 239 INGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAY 298

Query: 181 ARNGNLELAFGFLHRLP----NPDTISY-------------------------------- 204
            +N +   A  F   +      PD ++                                 
Sbjct: 299 EQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKD 358

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N ++N  A+ G +  A  +   +P  ++ SWN+++TGY       EA+  +  M+ 
Sbjct: 359 VVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEE 418

Query: 261 -KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            +D   ++ T+ +++   + + AL  GM IH+ +IK  L   + VA+ L+D+Y KCG++E
Sbjct: 419 CRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLE 478

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A S+F  + R   V WNA+I     +G   + ++LF+ +   R ++ D +TF+++L+AC
Sbjct: 479 DAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAER-VKADHITFVSLLSAC 537

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH+ +  D+  + F+ M K+YGIKP+++H   M+ L+G+ G + +A  ++R +       
Sbjct: 538 SHSGL-VDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDAS 596

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W ALLSA     + ++  +++  +++++ ++   YV+L N+Y +   W+    +R+  R
Sbjct: 597 IWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLAR 656

Query: 500 ERGLRKEAGCSWIEV 514
           +RGLRK  G S + V
Sbjct: 657 DRGLRKTPGWSSVVV 671



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 227/471 (48%), Gaps = 50/471 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           ++LH  +L  G   N+ +ST L+  Y     ++ +   F  I + ++ SWNS+IS YV+ 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 83  GKYRKALN----LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
           GKY +A+N    LF       +  D Y+F   L AC    SL  G  +H  + K   E  
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLVDGKKVHCCVFKMGFEDD 155

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN 198
           V +A  L+ +Y + G ++ A  VF +M  KD+ SWN++I+   +NGN   A G L+R+  
Sbjct: 156 VFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKG 215

Query: 199 P----DTISY----------NEVINGI-------------------------AQFGDIED 219
                DTI+           ++VING+                         ++FG ++D
Sbjct: 216 EGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQD 275

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
           A M+   M   +  SWNSI+  Y   N    AL  F  MQ   +  D  T  ++ S  + 
Sbjct: 276 AQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQ 335

Query: 280 LSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
           LS       I   VI++  LD  +V+ +AL++MY+K G +  A ++F  L RK+ ++WN 
Sbjct: 336 LSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNT 395

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           ++TGY +NG  ++ I+ +  ++  RD  P+  T+++++ A SH       +  + + +  
Sbjct: 396 LVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN 455

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
              +   V  C  +I L G+ G +  A  +  E+   +  V W A++++ G
Sbjct: 456 SLYLDVFVATC--LIDLYGKCGRLEDAMSLFYEIPRDT-SVPWNAIIASLG 503



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 128/273 (46%), Gaps = 14/273 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+     ++ A S +G      ++H  ++K+    +VFV+T L+  Y K   L DA  +
Sbjct: 424 PNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSL 483

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EIP+ + V WN++I+     G+  +AL LF ++    + AD  +F S L+AC   G +
Sbjct: 484 FYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLV 543

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G      + K Y ++  +    C++D+ G+ G +E A  +   M I  D   W ++++
Sbjct: 544 DEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLS 603

Query: 179 ASARNGNLELAFGFLHRLPNPDT--ISYNEVINGIAQFGDIEDAIMILSSMPSP----NS 232
           A    GN EL      RL   D+  + Y  +++ I    +  + ++ + S+        +
Sbjct: 604 ACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKT 663

Query: 233 SSWNSILTG------YVNRNRVPEALHLFGEMQ 259
             W+S++ G      Y      P+   ++ E++
Sbjct: 664 PGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELK 696


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 162/535 (30%), Positives = 278/535 (51%), Gaps = 41/535 (7%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           Y   LH + +K G +++VFV +AL+  Y KI  +  + K+F E+P  + V+W ++I+G V
Sbjct: 134 YGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLV 193

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           ++G     L  F  + RS++  D+Y++  AL A    G+L  G +IH++ +K   +    
Sbjct: 194 RAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSF 253

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-- 198
           +AN L  MY KCG ++  +  F +M   D++SW +++ A  + G  +       R+    
Sbjct: 254 VANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASN 313

Query: 199 --PDTISYNEVINGIAQF-----------------------------------GDIEDAI 221
             P+  +++ VI+  A F                                   G++    
Sbjct: 314 VIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVS 373

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +  SM   +  +W++I+  Y       EA      M+S+    +E+  +++LS    ++
Sbjct: 374 KVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMA 433

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  +H+ V+  GL+ + +V SAL+ MY+KCG +  A  +F    + ++++W AMI+
Sbjct: 434 ILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMIS 493

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYA +G   + IELFE ++ V  L+PDSVTF+ VL ACSH  +  D    YF SM+KDY 
Sbjct: 494 GYAEHGHSQEAIELFENIQKV-GLRPDSVTFIGVLTACSHAGM-VDLGFYYFNSMSKDYH 551

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I P+ EH   MI L+ + G +  A+ +IR +      VVW  LL A     D+D  + +A
Sbjct: 552 ITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAA 611

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           AEV+KL+ +    ++ L N++ + G W  A+ +R  M+ +G+ KE G S ++V++
Sbjct: 612 AEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKD 666



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 199/438 (45%), Gaps = 44/438 (10%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE-RSEIYADAYSFT 108
           K N L DA  +F ++PQ   VSW ++ISGYV S    +AL LF ++  +SE+  D +  +
Sbjct: 61  KTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLS 120

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
             L  CG   +   G  +H   VK  L   V + + L+DMY K G +  +  VF EM  +
Sbjct: 121 LGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTR 180

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRLPNP----DTISY-------------------- 204
           + ++W +VI    R G  E    +   +       D+ +Y                    
Sbjct: 181 NAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIH 240

Query: 205 ---------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
                          N +     + G ++  +     M + +  SW +I+T Y+   +  
Sbjct: 241 TQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKED 300

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
             L  F  M++ +V  +EYTFS ++S  A  + L WG  +H+ V+  G   ++ VA++++
Sbjct: 301 CGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIM 360

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
            +YSKCG++     +F S+  ++++TW+ +I  Y++ G   +  E   ++++    +P+ 
Sbjct: 361 TLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRS-EGPKPNE 419

Query: 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429
               +VL+ C    I   +  +   +     G++ T   C ++I +  + G +  A ++ 
Sbjct: 420 FALASVLSVCGSMAIL--EQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIF 477

Query: 430 RELGFGSYGVVWRALLSA 447
            +  +    + W A++S 
Sbjct: 478 MD-SWKDDIISWTAMISG 494



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 182/411 (44%), Gaps = 42/411 (10%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV 69
           L+AS+D G   + + +H   LK GF  N FV+ +L   Y K   L      F ++    V
Sbjct: 224 LKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDV 283

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
           VSW ++++ Y+Q GK    L  F  +  S +  + Y+F++ ++ C     L+ G  +H+ 
Sbjct: 284 VSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAH 343

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
           ++       + +AN ++ +Y KCG +     VF  M  +DII+W+++IAA ++ G  E A
Sbjct: 344 VLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEA 403

Query: 190 FGFLHRL----PNPDTISYNEVIN---------------------GI------------- 211
           F +L R+    P P+  +   V++                     G+             
Sbjct: 404 FEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIM 463

Query: 212 -AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
            A+ G I +A  I       +  SW ++++GY       EA+ LF  +Q   +  D  TF
Sbjct: 464 YAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTF 523

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSL- 328
             +L+  +    +  G    + + K   +  S      ++D+  + G++  A+++ RS+ 
Sbjct: 524 IGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMP 583

Query: 329 CRKNLVTWNAMITGYARNGDL-TKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            + + V W+ ++     +GD+        E LK   +     +T  N+ AA
Sbjct: 584 IQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIFAA 634



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 150/329 (45%), Gaps = 27/329 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNEY    ++   ++     + +QLH ++L  GF++ + V+ ++M  Y K   LA   K+
Sbjct: 316 PNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKV 375

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    +++W+++I+ Y Q G   +A      +       + ++  S L+ CG +  L
Sbjct: 376 FCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAIL 435

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H+ ++   LE+  ++ + LI MY KCGS+ +A  +F +    DIISW ++I+  
Sbjct: 436 EQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGY 495

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A +G+ + A      +      PD++++  V+   +  G ++      +SM      +P+
Sbjct: 496 AEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPS 555

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  ++       R+ +A  L   ++S  +  D+               + W  L+ +
Sbjct: 556 KEHYGCMIDLLCRAGRLHDAETL---IRSMPIQWDD---------------VVWSTLLRA 597

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEI 320
           C I   +D     A+ +L +   C    I
Sbjct: 598 CRIHGDVDCGQRAAAEVLKLDPNCAGTHI 626



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           D    N  +  + +   ++DA  +   +P  +  SW +I++GYVN +   EAL LF +M+
Sbjct: 48  DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMR 107

Query: 260 -SKDVPMDEYTFSTMLSGIA-GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
              ++ +D +  S  L     GL+ L +G  +H   +K GL  S+ V SALLDMY K G+
Sbjct: 108 LQSELRIDPFLLSLGLKTCGLGLNYL-YGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGE 166

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNG 347
           +  +  +F  +  +N VTW A+ITG  R G
Sbjct: 167 IGRSCKVFDEMPTRNAVTWTAVITGLVRAG 196


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 164/559 (29%), Positives = 296/559 (52%), Gaps = 46/559 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A   L      +++HC + K GF  +VFV+ +L+  Y +   L  AHK+
Sbjct: 122 PDFYTFPPILKACVSL---VDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKV 178

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           FV++P   V SWN++ISG+ Q+G    AL +   ++   +  D  +  S L  C Q   +
Sbjct: 179 FVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDV 238

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G+ IH  ++K+ L+  V ++N LI+MY K G ++DA  VF +M  +D++SWNS+IAA 
Sbjct: 239 INGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAY 298

Query: 181 ARNGNLELAFGFLHRLP----NPDTISY-------------------------------- 204
            +N +   A  F   +      PD ++                                 
Sbjct: 299 EQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKD 358

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N ++N  A+ G +  A  +   +P  ++ SWN+++TGY       EA+  +  M+ 
Sbjct: 359 VVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEE 418

Query: 261 -KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            +D   ++ T+ +++   + + AL  GM IH+ +IK  L   + VA+ L+D+Y KCG++E
Sbjct: 419 CRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLE 478

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A S+F  + R   V WNA+I     +G   + ++LF+ +   R ++ D +TF+++L+AC
Sbjct: 479 DAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAER-VKADHITFVSLLSAC 537

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH+ +  D+  + F+ M K+YGIKP+++H   M+ L+G+ G + +A  ++R +       
Sbjct: 538 SHSGL-VDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDAS 596

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W ALLSA     + ++  +++  +++++ ++   YV+L N+Y +   W+    +R+  R
Sbjct: 597 IWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLAR 656

Query: 500 ERGLRKEAGCSWIEVENVA 518
           +RGLRK  G S + V + A
Sbjct: 657 DRGLRKTPGWSSVVVGSKA 675



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 227/471 (48%), Gaps = 50/471 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           ++LH  +L  G   N+ +ST L+  Y     ++ +   F  I + ++ SWNS+IS YV+ 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 83  GKYRKALN----LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
           GKY +A+N    LF       +  D Y+F   L AC    SL  G  +H  + K   E  
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLVDGKKVHCCVFKMGFEDD 155

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN 198
           V +A  L+ +Y + G ++ A  VF +M  KD+ SWN++I+   +NGN   A G L+R+  
Sbjct: 156 VFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKG 215

Query: 199 P----DTISY----------NEVINGI-------------------------AQFGDIED 219
                DTI+           ++VING+                         ++FG ++D
Sbjct: 216 EGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQD 275

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
           A M+   M   +  SWNSI+  Y   N    AL  F  MQ   +  D  T  ++ S  + 
Sbjct: 276 AQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQ 335

Query: 280 LSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
           LS       I   VI++  LD  +V+ +AL++MY+K G +  A ++F  L RK+ ++WN 
Sbjct: 336 LSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNT 395

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           ++TGY +NG  ++ I+ +  ++  RD  P+  T+++++ A SH       +  + + +  
Sbjct: 396 LVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN 455

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
              +   V  C  +I L G+ G +  A  +  E+   +  V W A++++ G
Sbjct: 456 SLYLDVFVATC--LIDLYGKCGRLEDAMSLFYEIPRDT-SVPWNAIIASLG 503



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 128/273 (46%), Gaps = 14/273 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+     ++ A S +G      ++H  ++K+    +VFV+T L+  Y K   L DA  +
Sbjct: 424 PNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSL 483

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EIP+ + V WN++I+     G+  +AL LF ++    + AD  +F S L+AC   G +
Sbjct: 484 FYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLV 543

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G      + K Y ++  +    C++D+ G+ G +E A  +   M I  D   W ++++
Sbjct: 544 DEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLS 603

Query: 179 ASARNGNLELAFGFLHRLPNPDT--ISYNEVINGIAQFGDIEDAIMILSSMPSP----NS 232
           A    GN EL      RL   D+  + Y  +++ I    +  + ++ + S+        +
Sbjct: 604 ACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKT 663

Query: 233 SSWNSILTG------YVNRNRVPEALHLFGEMQ 259
             W+S++ G      Y      P+   ++ E++
Sbjct: 664 PGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELK 696


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 173/551 (31%), Positives = 281/551 (50%), Gaps = 64/551 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+  VL   ++A + L      +Q+H     SGF S+ FV ++L+  Y K N + DAH++
Sbjct: 112 PDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRV 171

Query: 61  FVEI--P---------------------------------QPSVVSWNSLISGYVQSGKY 85
           F  +  P                                 QP+++SWN +I+G+  SG Y
Sbjct: 172 FDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLY 231

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
            +A+ +F+++       D  + +S L A G L  L +G+ IH  ++K  L     +++ L
Sbjct: 232 SEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSAL 291

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYN 205
           IDMYGKC    +   VF +M   D+ S N+ I   +RNG +E +     RL         
Sbjct: 292 IDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSL----RL--------- 338

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
                   F  ++D  M L      N  SW S++       R  EAL LF EMQ   V  
Sbjct: 339 --------FRQLKDQGMEL------NVVSWTSMIACCSQNGRDMEALELFREMQIAGVKP 384

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           +  T   +L     ++AL  G   H   +++G+   + V SAL+DMY+KCG+++ +   F
Sbjct: 385 NSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICF 444

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
             +  KNLV WNA+I GYA +G   + +E+F+ ++     +PD ++F  VL+ACS + + 
Sbjct: 445 DGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQ-KPDIISFTCVLSACSQSGLT 503

Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
            ++ S YF SM+  YGI+  VEH   M+ L+ + G++ +A  MIR +       VW ALL
Sbjct: 504 -EEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALL 562

Query: 446 SASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505
           S+    +++ +  ++A ++ +LE  +   Y++L N+Y S G W+  + +R+ M+ +GLRK
Sbjct: 563 SSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRK 622

Query: 506 EAGCSWIEVEN 516
             GCSWIEV+N
Sbjct: 623 NPGCSWIEVKN 633



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 212/445 (47%), Gaps = 43/445 (9%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q H +ILK+G  ++  ++T L+  Y      ADA  +   +P+P+V S+++LI  + + 
Sbjct: 33  RQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKF 92

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            ++  AL+ F ++    +  D     SA+ AC  L +L+    +H        +    + 
Sbjct: 93  HQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQ 152

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
           + L+ MY KC  + DA  VF  M + D++SW++++AA AR G ++ A     RL      
Sbjct: 153 SSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEA----KRL------ 202

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                    ++ GD         S   PN  SWN ++ G+ +     EA+ +F +M  + 
Sbjct: 203 --------FSEMGD---------SGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRG 245

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
              D  T S++L  +  L  L  G+LIH  VIKQGL +   V+SAL+DMY KC       
Sbjct: 246 FEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMS 305

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F  +   ++ + NA I G +RNG +   + LF QLK  + ++ + V++ +++A CS  
Sbjct: 306 QVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKD-QGMELNVVSWTSMIACCSQN 364

Query: 383 DIPFDKVSEYFESMTKDYGIKPT-------VEHCCSMIRLM-GQKGEVWRAQRMIRELGF 434
               + + E F  M +  G+KP        +  C ++  LM G+    +  +R     G 
Sbjct: 365 GRDMEAL-ELFREM-QIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRR-----GI 417

Query: 435 GSYGVVWRALLSASGACSDLDVARI 459
            +   V  AL+     C  +  +RI
Sbjct: 418 STDVYVGSALIDMYAKCGRIQASRI 442


>gi|125603224|gb|EAZ42549.1| hypothetical protein OsJ_27115 [Oryza sativa Japonica Group]
          Length = 696

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 182/567 (32%), Positives = 286/567 (50%), Gaps = 49/567 (8%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N + L   LR+++         QL    LKSG  +NVF ++AL+  Y K   + DA ++F
Sbjct: 92  NTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVF 151

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +P+ + VSWN+LI+GY +SG    AL LF+E+ER  +  D  +F S L A  +  S  
Sbjct: 152 DGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAV-EGPSCF 210

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIAAS 180
           L   +H KIVKY    G+ + N  I  Y +CGS++D+  +F  + D +D+ISWN+++ A 
Sbjct: 211 LMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAY 270

Query: 181 ARNGNLELAFGFLHRL-----PNPDTISYNEVINGIAQFGD------------------- 216
             NG  + A  F  R+      +PD  S+  +I+  ++ G                    
Sbjct: 271 THNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEG 330

Query: 217 --------------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
                               +EDA    +S+   ++ SWNS+LTGY       +AL  F 
Sbjct: 331 VTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFR 390

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
            M S++V  DEY FS  L   + L+ L  G  IH  VI  G  ++  V+S+L+ MYSK G
Sbjct: 391 CMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSG 450

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            ++ A   F    + + V WNAMI GYA++G    V  LF ++   R    D +TF+ ++
Sbjct: 451 IIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQ-RKAPLDHITFVGLI 509

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
            +CSH  +  D+ SE   +M   YG+   +EH    + L G+ G++ +A+++I  + F  
Sbjct: 510 TSCSHAGL-VDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEP 568

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
             +VW  LL A     ++++A   A+ +   E      YV+L ++Y+  G W   + ++ 
Sbjct: 569 DAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQR 628

Query: 497 FMRERGLRKEAGCSWIEVENVAAHSSN 523
            M++RGL K  G SWIEV+N   HS N
Sbjct: 629 VMKKRGLSKVPGWSWIEVKN-EVHSFN 654



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 169/371 (45%), Gaps = 45/371 (12%)

Query: 31  KSGFLSNVFVSTALMGFYRK-INSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKAL 89
           KSG  +    +  L  + R   + LA A ++F E+P+   VSWN+L++    SG + +A 
Sbjct: 19  KSGSCATTPWNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAW 78

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
            L   +    + ++ ++  SAL +        +G  + S  +K  L   V  A+ L+D+Y
Sbjct: 79  RLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVY 138

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISY- 204
            KCG V DA  VF  M +++ +SWN++IA    +G++  A      +      PD  ++ 
Sbjct: 139 AKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFA 198

Query: 205 ---------------------------------NEVINGIAQFGDIEDAIMILSSMPS-P 230
                                            N  I   +Q G ++D+  I   +    
Sbjct: 199 SLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIR 258

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGE-MQSKDVPMDEYTFSTMLSGIAGLSALT-WGML 288
           +  SWN++L  Y +     EA+  F   MQ   V  D Y+F++++S  +        G +
Sbjct: 259 DLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRV 318

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQ---VEIADSMFRSLCRKNLVTWNAMITGYAR 345
           IH  VIK  L+    V +AL+ MY++  +   +E A   F SL  K+ V+WN+M+TGY++
Sbjct: 319 IHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQ 378

Query: 346 NGDLTKVIELF 356
           +G     ++ F
Sbjct: 379 HGLSADALKFF 389



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 1/156 (0%)

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           +   +P  +  SWN++L         PEA  L   M ++ +  + +   + L   A    
Sbjct: 49  VFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARR 108

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
              G  + S  +K GL  ++  ASALLD+Y+KCG+V  A  +F  +  +N V+WNA+I G
Sbjct: 109 PAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAG 168

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           Y  +GD+   +ELF +++    L PD  TF ++L A
Sbjct: 169 YTESGDMASALELFLEMER-EGLAPDEATFASLLTA 203


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 171/551 (31%), Positives = 280/551 (50%), Gaps = 64/551 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+  VL   ++A + L      +Q+H     SGF S+ FV ++L+  Y K N + DAH++
Sbjct: 112 PDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRV 171

Query: 61  FVEI--P---------------------------------QPSVVSWNSLISGYVQSGKY 85
           F  +  P                                 QP+++SWN +I+G+  SG Y
Sbjct: 172 FDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLY 231

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
            +A+ +F+++       D  + +S L A G L  L +G+ IH  ++K  L     +++ L
Sbjct: 232 SEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSAL 291

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYN 205
           IDMYGKC    +   VF +M   D+ S N+ I   +RNG +E                  
Sbjct: 292 IDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVE------------------ 333

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
              + +  F  ++D  M L      N  SW S++       R  EAL LF EMQ   V  
Sbjct: 334 ---SSLRLFRQLKDQGMEL------NVVSWTSMIACCSQNGRDIEALELFREMQIAGVKP 384

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           +  T   +L     ++AL  G   H   +++G+   + V SAL+DMY+KCG+++ +   F
Sbjct: 385 NSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICF 444

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
             +  KNLV WNA+I GYA +G   + +E+F+ ++     +PD ++F  VL+ACS + + 
Sbjct: 445 DGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQ-KPDIISFTCVLSACSQSGLT 503

Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
            ++ S YF SM+  YGI+  VEH   M+ L+ + G++ +A  MIR +       VW ALL
Sbjct: 504 -EEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALL 562

Query: 446 SASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505
           S+    +++ +  ++A ++ +LE  +   Y++L N+Y S G W+  + +R+ M+ +GLRK
Sbjct: 563 SSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRK 622

Query: 506 EAGCSWIEVEN 516
             GCSWIEV+N
Sbjct: 623 NPGCSWIEVKN 633



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 126/465 (27%), Positives = 222/465 (47%), Gaps = 45/465 (9%)

Query: 3   EYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFV 62
           ++ +F+ L +++     T  +Q H +ILK+G  ++  ++T L+  Y      ADA  +  
Sbjct: 15  QHTIFNCLNSTTASLSQT--RQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLD 72

Query: 63  EIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQL 122
            +P+P+V S+++LI  + +  ++  AL+ F ++    +  D     SA+ AC  L +L+ 
Sbjct: 73  LVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKP 132

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR 182
              +H        +    + + L+ MY KC  + DA  VF  M + D++SW++++AA AR
Sbjct: 133 ARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYAR 192

Query: 183 NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGY 242
            G ++ A     RL               ++ GD         S   PN  SWN ++ G+
Sbjct: 193 QGCVDEA----KRL--------------FSEMGD---------SGVQPNLISWNGMIAGF 225

Query: 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
            +     EA+ +F +M  +    D  T S++L  +  L  L  G+LIH  VIKQGL +  
Sbjct: 226 NHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDK 285

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
            V+SAL+DMY KC        +F  +   ++ + NA I G +RNG +   + LF QLK  
Sbjct: 286 CVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKD- 344

Query: 363 RDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-------VEHCCSMIRL 415
           + ++ + V++ +++A CS      + + E F  M +  G+KP        +  C ++  L
Sbjct: 345 QGMELNVVSWTSMIACCSQNGRDIEAL-ELFREM-QIAGVKPNSVTIPCLLPACGNIAAL 402

Query: 416 M-GQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARI 459
           M G+    +  +R     G  +   V  AL+     C  +  +RI
Sbjct: 403 MHGKAAHCFSLRR-----GISTDVYVGSALIDMYAKCGRIQASRI 442


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 163/556 (29%), Positives = 289/556 (51%), Gaps = 42/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +F  L      G     ++ HC+++K G  S+ FV T+L+  Y K   +  A ++
Sbjct: 111 PHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRV 170

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           + ++      + N LIS Y ++G + +A  +F+++       + Y++++ LA CG + ++
Sbjct: 171 YDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAI 230

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           Q G  +H+ +VK        + N L+ +Y KCG +E+A  VF  +  ++IISW + I   
Sbjct: 231 QEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGF 290

Query: 181 ARNGNLELAFGFLHRL------PNPDTIS------------------YNEVI-NGIAQ-- 213
            ++G+ + A      +      PN  T S                  + +VI  G+A   
Sbjct: 291 YQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGV 350

Query: 214 ------------FGDIEDAIMILSSMPSPNSS-SWNSILTGYVNRNRVPEALHLFGEMQS 260
                        G++++A      M    S+ SWN+++ GYV   ++ +A+  F  M  
Sbjct: 351 FVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVK 410

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +DV  +E+T+S +    +   +L   + IHS +IK  +++++ VAS+L++ Y++CG +E 
Sbjct: 411 EDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLEN 470

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  +   ++V+WN++I  Y++NGD  K I L  ++    + +P S TFL VL+ACS
Sbjct: 471 AVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGN-KPTSXTFLTVLSACS 529

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H+ +   +  E+F+SM +DY I+P   HC  M+ ++G+ G++  A   I++L       +
Sbjct: 530 HSGL-VQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASI 588

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           WR LL+A    S+L +A   A +++ LE +   VYV L N+Y   G W  A   R  M +
Sbjct: 589 WRPLLAACRYNSNLQMAEYVAEKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQ 648

Query: 501 RGLRKEAGCSWIEVEN 516
           + + KE GCSWIEV N
Sbjct: 649 KEISKEPGCSWIEVNN 664



 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 158/499 (31%), Positives = 262/499 (52%), Gaps = 10/499 (2%)

Query: 23   QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            + LH +++  G     + +  LM FY +   L++A K+F +IP  ++  W  L     + 
Sbjct: 823  RALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARR 882

Query: 83   GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            G Y +AL+ F E+++  +  + +   S L ACG L   + G  +H+ I+K S E    I 
Sbjct: 883  GFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYII 942

Query: 143  NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
            + LI MY KCG VE A  VF  ++DKD++  N++++  A++G +  A   + ++      
Sbjct: 943  SALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVK 1002

Query: 199  PDTISYNEVINGIAQFGDIEDAIMILSSMPS----PNSSSWNSILTGYVNRNRVPEALHL 254
            P+ +S+N +I G +Q GD      +   M +    P+  SW S+++G+V      E    
Sbjct: 1003 PNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDA 1062

Query: 255  FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
            F EM  +       T S++L     ++ L  G  IH   +  G++  + V SAL+DMY+K
Sbjct: 1063 FKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAK 1122

Query: 315  CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
            CG +  A  +F  +  +N VTWN++I GYA +G   + IELF Q++   D + D +TF  
Sbjct: 1123 CGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEE-SDTKLDHLTFTA 1181

Query: 375  VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
            VL ACSH  +  +     F  M + Y I+P +EH   M+ L+G+ G++  A  +I+ +  
Sbjct: 1182 VLNACSHAGM-VELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPV 1240

Query: 435  GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494
                 VW ALL A     ++++A ++A  + +LE +S    ++L NLY   G W  A+ M
Sbjct: 1241 EPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYADAGRWGNAAKM 1300

Query: 495  RNFMRERGLRKEAGCSWIE 513
            +  M++R   K  GCSWIE
Sbjct: 1301 KKMMKQRKFGKFPGCSWIE 1319



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 196/415 (47%), Gaps = 61/415 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDTY-CQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           PNE+  F ++ AS     D    +  H  ++K G  S VFV TA++  Y  +  + +A K
Sbjct: 313 PNEFT-FSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEK 371

Query: 60  MFVEIPQP-SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
            F ++ +  S VSWN+LI+GYV + K  KA+  F  + + ++  + +++++   AC    
Sbjct: 372 QFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFP 431

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           SL   + IHS+++K ++E  + +A+ LI+ Y +CGS+E+A+ VF ++ D D++SWNS+I 
Sbjct: 432 SLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIK 491

Query: 179 ASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSS 234
           A ++NG+   A   L ++      P + ++  V++  +  G +++      SM    S  
Sbjct: 492 AYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQ 551

Query: 235 WNSILTGYVNRNRVPEALH------LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
                         PE  H      + G     +  +D     TM       +A  W  L
Sbjct: 552 --------------PEETHCSCMVDILGRAGQLENALDFIKKLTMKP-----TASIWRPL 592

Query: 289 IHSCVIKQGLDASIVVASALLD--------------MYSKCGQVEIADSMFRSLCRKNL- 333
           + +C     L  +  VA  +LD              MY++ G+   A++  R + +K + 
Sbjct: 593 LAACRYNSNLQMAEYVAEKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEIS 652

Query: 334 ----VTW----NAMITGYARNGDLTKVIELFEQLKT-VRDLQ-----PDSVTFLN 374
                +W    N M   ++ +    ++ +++E+LK  VR +Q     P + T L+
Sbjct: 653 KEPGCSWIEVNNKMYKFFSHDKAHPEMPKVYEKLKQLVRQIQDIGYSPPTTTVLH 707



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 180/404 (44%), Gaps = 53/404 (13%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
            PN++VL  +L+A   L      + +H  ILK+ F S+ ++ +AL+  Y K   +  A ++
Sbjct: 902  PNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRV 961

Query: 61   FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            F  I    +V  N+++SGY Q G   +ALBL  +++++ +  +  S+ + +A   Q+G  
Sbjct: 962  FDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDK 1021

Query: 121  QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI----ISWNSV 176
             +   +   +    +E  VV    +I  + +     +    F EM+D+      ++ +S+
Sbjct: 1022 SMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSL 1081

Query: 177  IAASARNGNLELA---FGFLHRLP-NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
            + A     NL       G+   +    D    + +++  A+ G I +A ++   MP  N+
Sbjct: 1082 LPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNT 1141

Query: 233  SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
             +WNS++ GY N     EA+ LF +M+  D  +D  TF                      
Sbjct: 1142 VTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTF---------------------- 1179

Query: 293  VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK-----NLVTWNAMITGYARNG 347
                         +A+L+  S  G VE+ +S+F  +  K      L  +  M+    R G
Sbjct: 1180 -------------TAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAG 1226

Query: 348  DLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC-SHTDIPFDKVS 390
             L++  +L + +     ++PD   +  +L AC +H +I   +V+
Sbjct: 1227 KLSEAYDLIKAMP----VEPDKFVWGALLGACRNHGNIELAEVA 1266



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 1/113 (0%)

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           T++  +   A   AL  G  +H+ ++  GL      A+ L+  Y++CGQ+  A  +F  +
Sbjct: 805 TYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKI 864

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              N+  W  +    AR G   + +  F +++    L+P+     ++L AC H
Sbjct: 865 PNTNIRRWIVLTGACARRGFYEEALSAFSEMQK-EGLRPNQFVLPSILKACGH 916


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 174/563 (30%), Positives = 298/563 (52%), Gaps = 56/563 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSG-FLSNVFVSTALMG-FYRKINSLADAH 58
           PN+Y    ++RA S+  +    +    +++K+G F S+V V  +L+  F +  NS  +A+
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAY 223

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           K+F ++ + +VV+W  +I+  +Q G  R+A+  F+++  S   +D ++ +S  +AC +L 
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELE 283

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC---GSVEDAIGVFGEMIDKDIISWNS 175
           +L LG  +HS  ++  L   V  +  L+DMY KC   GSV+D   VF  M D  ++SW +
Sbjct: 284 NLSLGKQLHSWAIRSGLVDDVECS--LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTA 341

Query: 176 VIAASARNGNLELAFGFL--------HRLPNPDTIS------------------------ 203
           +I    +N NL      L        H  PN  T S                        
Sbjct: 342 LITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFK 401

Query: 204 ---------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
                     N VI+   +   +EDA     S+   N  S+N+ L G        +A  L
Sbjct: 402 RGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKL 461

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
             E+  +++ +  +TF+++LSG+A + ++  G  IHS V+K GL  +  V +AL+ MYSK
Sbjct: 462 LSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSK 521

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG ++ A  +F  +  +N+++W +MITG+A++G   +V+E F Q+     ++P+ VT++ 
Sbjct: 522 CGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQM-IEEGVKPNEVTYVA 580

Query: 375 VLAACSHTDIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431
           +L+ACSH  +    VSE   +F SM +D+ IKP +EH   M+ L+ + G +  A   I  
Sbjct: 581 ILSACSHVGL----VSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINT 636

Query: 432 LGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA 491
           + F +  +VWR  L A    S+ ++ +++A ++++L+ +    Y+ L N+Y   G W+ +
Sbjct: 637 MPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEES 696

Query: 492 SVMRNFMRERGLRKEAGCSWIEV 514
           + MR  M+ER L KE GCSWIEV
Sbjct: 697 TEMRRKMKERNLVKEGGCSWIEV 719



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 130/551 (23%), Positives = 226/551 (41%), Gaps = 102/551 (18%)

Query: 66  QPSVVSW----NSLISGYVQSGKYRKALNLFVELERSEIYA-DAYSFTSALAACGQLGSL 120
           QPSV +     + LI  ++ +G  R A++    + R  I   D+ +F+S L +C +    
Sbjct: 19  QPSVSNRINVADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDF 78

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI---DKDIISWNSVI 177
           +LG  +H++++++ +E   V+ N LI +Y K G    A  VF  M     +D++SW++++
Sbjct: 79  RLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMM 138

Query: 178 AASARNGN----LELAFGFLHRLPNPDTISYNEVIN--------GIAQF----------- 214
           A    NG     +++   FL     P+   Y  VI         G+ +            
Sbjct: 139 ACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHF 198

Query: 215 ------------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
                                E+A  +   M   N  +W  ++T  +      EA+  F 
Sbjct: 199 ESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFL 258

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC- 315
           +M       D++T S++ S  A L  L+ G  +HS  I+ GL     V  +L+DMY+KC 
Sbjct: 259 DMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCS 316

Query: 316 --GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL-TKVIELFEQLKTVRDLQPDSVTF 372
             G V+    +F  +   ++++W A+ITGY +N +L T+ I LF ++ T   ++P+  TF
Sbjct: 317 ADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTF 376

Query: 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI--- 429
            +   AC +   P  +V +         G+        S+I +  +   +  AQR     
Sbjct: 377 SSAFKACGNLSDP--RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESL 434

Query: 430 ---------------------------------RELGFGSYGVVWRALLSASGACSDLDV 456
                                            RELG  ++   + +LLS       +  
Sbjct: 435 SEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAF--TFASLLSGVANVGSIRK 492

Query: 457 ARISAAEVIKLEGDSDY-VYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE-V 514
                ++V+KL    +  V   L ++Y+  G+ D AS + NFM  R +      SW   +
Sbjct: 493 GEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNV-----ISWTSMI 547

Query: 515 ENVAAHSSNIR 525
              A H   IR
Sbjct: 548 TGFAKHGFAIR 558



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 114/505 (22%), Positives = 212/505 (41%), Gaps = 64/505 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQL-HCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P + V F  L  S     D    +L H  +++     +  +  +L+  Y K    A A  
Sbjct: 59  PMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAED 118

Query: 60  MFVEIP---QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           +F  +    +  VVSW+++++ Y  +G+   A+ +FVE     +  + Y +T+ + AC  
Sbjct: 119 VFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSN 178

Query: 117 LGSLQLGMAIHSKIVKYS-LERGVVIANCLIDMYGKC-GSVEDAIGVFGEMIDKDIISWN 174
              + +G      ++K    E  V +   LIDM+ K   S E+A  VF +M + ++++W 
Sbjct: 179 SDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWT 238

Query: 175 SVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQF---------------- 214
            +I    + G    A  F   +       D  + + V +  A+                 
Sbjct: 239 LMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRS 298

Query: 215 --------------------GDIEDAIMILSSMPSPNSSSWNSILTGYV-NRNRVPEALH 253
                               G ++D   +   M   +  SW +++TGY+ N N   EA++
Sbjct: 299 GLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAIN 358

Query: 254 LFGEMQSK-DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
           LF EM ++  V  + +TFS+       LS    G  +     K+GL ++  VA++++ M+
Sbjct: 359 LFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMF 418

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
            K  ++E A   F SL  KNLV++N  + G  RN +  +  +L  ++ T R+L   + TF
Sbjct: 419 VKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEI-TERELGVSAFTF 477

Query: 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
            ++L+  +  ++   +  E   S     G+      C ++I +  + G +  A R+   +
Sbjct: 478 ASLLSGVA--NVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFM 535

Query: 433 -------------GFGSYGVVWRAL 444
                        GF  +G   R L
Sbjct: 536 ENRNVISWTSMITGFAKHGFAIRVL 560


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 157/473 (33%), Positives = 255/473 (53%), Gaps = 42/473 (8%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD 103
           LMG Y +   L DA  +F  +P    +SWN +I+GY Q+G   +A  LF EL       D
Sbjct: 221 LMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELP----IRD 276

Query: 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
            +++T+ ++     G +Q GM                              +++A  +F 
Sbjct: 277 VFAWTAMVS-----GFVQNGM------------------------------LDEATRIFE 301

Query: 164 EMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMI 223
           EM +K+ +SWN++IA   ++  +E A     ++P+ +T S+N ++ G AQ G+I+ A ++
Sbjct: 302 EMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKIL 361

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              MP  +  SW ++++GY    +  EALHLF +M+     ++    +  LS  A ++AL
Sbjct: 362 FDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAAL 421

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H  ++K G     +  +ALL MY KCG +E A  +F  +  K++V+WN MI GY
Sbjct: 422 ELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGY 481

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           AR+G   + + LFE +K    ++PD VT + VL+ACSHT    DK  EYF SM ++YGI 
Sbjct: 482 ARHGFGKEALALFESMKMT--IKPDDVTLVGVLSACSHTGF-VDKGMEYFNSMYQNYGIT 538

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
              +H   MI L+G+ G +  A  +++ + F      W ALL AS    D ++   +A +
Sbjct: 539 ANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEK 598

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           V ++E D+  +YV+L NLY + G W     MR+ MR++G++K  G SW+E++N
Sbjct: 599 VFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQN 651



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 167/332 (50%), Gaps = 23/332 (6%)

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
           I    +V WN  IS Y++ G+   AL++F  + R        + T      G L + +  
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRS------TVTYNAMISGYLSNNKFD 108

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
            A   K+ +   +R ++  N ++  Y K G++  A  +F +M +KD++SWN++++  A+N
Sbjct: 109 CA--RKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166

Query: 184 GNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYV 243
           G +E A     ++   + IS+N +++   Q G IEDA  +  S       SWN ++ GYV
Sbjct: 167 GFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYV 226

Query: 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV 303
            + R+ +A  LF  M  +    D+ +++ M++G A       G+L  +  + + L    V
Sbjct: 227 RKKRLDDARSLFDRMPVR----DKISWNIMITGYA-----QNGLLSEARRLFEELPIRDV 277

Query: 304 VA-SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
            A +A++  + + G ++ A  +F  +  KN V+WNAMI GY ++  + K  ELF+Q+ + 
Sbjct: 278 FAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR 337

Query: 363 RDLQPDSVTFLNVLAACSHTD---IPFDKVSE 391
                +  T +   A C + D   I FD++ +
Sbjct: 338 NTSSWN--TMVTGYAQCGNIDQAKILFDEMPQ 367



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 3/169 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH  ++K+GF +      AL+  Y K  S+ +A  +F +I +  +VSWN++I+GY + 
Sbjct: 425 KQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARH 484

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA-IHSKIVKYSLERGVVI 141
           G  ++AL LF  ++ + I  D  +    L+AC   G +  GM   +S    Y +      
Sbjct: 485 GFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKH 543

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLELA 189
             C+ID+ G+ G +++A+ +   M    D  +W +++ AS  +G+ EL 
Sbjct: 544 YTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELG 592


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 158/499 (31%), Positives = 262/499 (52%), Gaps = 40/499 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  + KS   S+V++ TAL+  Y K     +A K+F  +P+ ++VSWNSLI+ Y Q+
Sbjct: 167 EQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQN 226

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER-GVVI 141
           G   +AL LFV + +     D  +  S ++AC  L + + G  +H+++VK    R  +V+
Sbjct: 227 GPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVL 286

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
            N L+DMY KCG   +A  VF  M  + ++S  S+I   A++ N                
Sbjct: 287 NNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSAN---------------- 330

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                          + DA  +   M   N  +WN ++  Y + +   EAL LF  ++ +
Sbjct: 331 ---------------VGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRE 375

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL------DASIVVASALLDMYSKC 315
            V    YT+  +L+  A L+ L  G   H  V+K+G       ++ + V ++L+DMY K 
Sbjct: 376 SVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKT 435

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G +     +F  +  ++ V+WNAMI GYA+NG     + LFE++    + +PDSVT + V
Sbjct: 436 GSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNE-RPDSVTMIGV 494

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L+AC H+ +   +   YF+SMT+D+GI PT +H   MI L+G+ G +   + +I  +   
Sbjct: 495 LSACGHSGL-VKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPME 553

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
              V+W +LL A     ++D+   +A ++ +L+ D+   YV+L N+Y   G W     +R
Sbjct: 554 PDAVLWASLLGACRLHKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVR 613

Query: 496 NFMRERGLRKEAGCSWIEV 514
             M+ RG+ K+ GCSWIE+
Sbjct: 614 RSMKHRGVSKQPGCSWIEI 632



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 122/208 (58%), Gaps = 3/208 (1%)

Query: 174 NSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS 233
           N++++A AR G+L  A      +P+ +T SYN +++  A+ G  +DA+ +  ++P P+  
Sbjct: 54  NTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDPDQC 113

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           S+N+++       R  +AL     M + D  ++ Y+F++ LS  A   A   G  +H+ V
Sbjct: 114 SYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALV 173

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
            K    + + + +AL+DMY+KC + E A  +F ++  +N+V+WN++IT Y +NG + + +
Sbjct: 174 TKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEAL 233

Query: 354 ELFEQLKTVRD-LQPDSVTFLNVLAACS 380
            LF  ++ ++D   PD VT  +V++AC+
Sbjct: 234 ALF--VRMMKDGFVPDEVTLASVMSACA 259



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 153/380 (40%), Gaps = 111/380 (29%)

Query: 73  NSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132
           N+L+S Y + G    A  +F  +     + + +S+ + L+AC +L               
Sbjct: 54  NTLLSAYARLGSLHDARRVFDGMP----HRNTFSYNALLSACARL--------------- 94

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF 192
                               G  +DA+ +FG + D D  S+N+V+AA A++G    A  F
Sbjct: 95  --------------------GRADDALALFGAIPDPDQCSYNAVVAALAQHGRGGDALRF 134

Query: 193 LHRLPNPDTI-----------------------SYNEVINGIAQFGDI------------ 217
           L  +   D +                         + ++   +   D+            
Sbjct: 135 LAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAK 194

Query: 218 ----EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
               E+A  +  +MP  N  SWNS++T Y     V EAL LF  M       DE T +++
Sbjct: 195 CERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASV 254

Query: 274 LSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQ--------------- 317
           +S  AGL+A   G  +H+ ++K       +V+ +AL+DMY+KCG+               
Sbjct: 255 MSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRS 314

Query: 318 ----------------VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
                           V  A ++F  +  KN+V WN +I  YA N +  + + LF +LK 
Sbjct: 315 VVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKR 374

Query: 362 VRDLQPDSVTFLNVLAACSH 381
              + P   T+ NVL AC++
Sbjct: 375 -ESVWPTHYTYGNVLNACAN 393



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 117/241 (48%), Gaps = 17/241 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL------SNVFVSTALMGFYRKINSL 54
           P  Y   ++L A ++L      QQ H ++LK GF       S+VFV  +L+  Y K  S+
Sbjct: 379 PTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSI 438

Query: 55  ADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC 114
           +D  K+F  +     VSWN++I GY Q+G+ + AL LF  +  S    D+ +    L+AC
Sbjct: 439 SDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSAC 498

Query: 115 GQLGSLQLGMAIHSKIVKYSLERGVVIA----NCLIDMYGKCGSVEDAIGVFGEM-IDKD 169
           G  G ++ G      + +   + G++       C+ID+ G+ G +++   +   M ++ D
Sbjct: 499 GHSGLVKEGRRYFQSMTE---DHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPD 555

Query: 170 IISWNSVIAASARNGNLEL---AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
            + W S++ A   + N+++   A G L  L   ++  Y  + N  A+ G   D   +  S
Sbjct: 556 AVLWASLLGACRLHKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRS 615

Query: 227 M 227
           M
Sbjct: 616 M 616


>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Cucumis sativus]
          Length = 542

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 151/501 (30%), Positives = 271/501 (54%), Gaps = 13/501 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKI---NSLADAHKMFVEIPQPSVVSWNSLISGY 79
           +QLH +++ +G  S   V   L+ F   I    ++  AH++F +I QP +  WN++I G 
Sbjct: 30  KQLHAFLIVNGLNSTTSVLRELI-FVSAIVVSGTMDYAHQLFAQISQPDIFMWNTMIRGS 88

Query: 80  VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
            Q+ K   A++L+ ++E   +  D ++F+  L AC +L  ++LG  IH K++K   +   
Sbjct: 89  AQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNT 148

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            + N LI  +  CG +  A  +F     ++++ W+++ A  AR G L++A      +P  
Sbjct: 149 FVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDVARQLFDEMPMK 208

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           D +S+N +I   A+ G++E A  +   +P  +  +WN+++ GYV      EAL +F  M+
Sbjct: 209 DLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMR 268

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL-DASIVVASALLDMYSKCGQV 318
                 D+ T  ++LS  A L  L  G  IH  +      D S+++++AL+DMY+KCG +
Sbjct: 269 DLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSI 328

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
             A  +F+ + +K+  +WN++I G A +G   + I LF+++  ++ ++P+ +TF+ VL A
Sbjct: 329 GNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLK-MKPNEITFVAVLVA 387

Query: 379 CSHTDIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           CSH      KV E   YF  M   + I+P ++H   M+ ++G+ G +  A   I  +   
Sbjct: 388 CSHA----GKVREGRMYFNLMKNVFKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIE 443

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
              ++WR LL A     D+++ R +  +++K+  D    YV+L N+Y S G WD    +R
Sbjct: 444 PNAIIWRTLLGACRVHGDVELGRRANEQLLKMRKDESGDYVLLSNIYASQGEWDGVQKVR 503

Query: 496 NFMRERGLRKEAGCSWIEVEN 516
             M + G++K+ G S I+ +N
Sbjct: 504 KLMDDGGVKKKVGHSLIDSDN 524



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 124/296 (41%), Gaps = 67/296 (22%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLAD---- 56
           P+++    +L+A + L W      +H  +LKSGF SN FV   L+ F+     LA     
Sbjct: 111 PDKFTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARAL 170

Query: 57  ---------------------------AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKAL 89
                                      A ++F E+P   +VSWN +I+ Y + G+  KA 
Sbjct: 171 FDASAKREVVPWSALTAGYARRGKLDVARQLFDEMPMKDLVSWNVMITAYAKHGEMEKAR 230

Query: 90  NLFVELERSEIYA-------------------------------DAYSFTSALAACGQLG 118
            LF E+ + ++                                 D  +  S L+A   LG
Sbjct: 231 KLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADLG 290

Query: 119 SLQLGMAIHSKIVKYSL-ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
            L++G  IH  I      +  V+++N LIDMY KCGS+ +A+ VF  M  KD  SWNS+I
Sbjct: 291 DLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSII 350

Query: 178 AASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
              A +G+ E +      +      P+ I++  V+   +  G + +  M  + M +
Sbjct: 351 GGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKN 406


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 169/556 (30%), Positives = 290/556 (52%), Gaps = 43/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+ +  +L A + L      +++H  +LK G   + F + AL+  Y K   +  A  +
Sbjct: 181 PNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAV 240

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +I  P VVSWN++I+G V       AL L  E++ S    + ++ +SAL AC  +G  
Sbjct: 241 FQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFK 300

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +HS ++K      +  A  L+DMY KC  ++DA   +  M  KDII+WN++I+  
Sbjct: 301 ELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGY 360

Query: 181 ARNGNLELAFGFLHRLPNPD----------------------------TISY-------- 204
           ++ G+   A     ++ + D                            TIS         
Sbjct: 361 SQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDF 420

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +++   +   I++A  I       +  ++ S++T Y       EAL L+ +MQ  
Sbjct: 421 YVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDA 480

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           D+  D +  S++L+  A LSA   G  +H   IK G    I  +++L++MY+KCG +E A
Sbjct: 481 DIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDA 540

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACS 380
           D  F  +  + +V+W+AMI GYA++G   + + LF Q+  +RD + P+ +T ++VL AC+
Sbjct: 541 DRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQM--LRDGVPPNHITLVSVLCACN 598

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H  +  ++  +YFE M   +GIKPT EH   MI L+G+ G++  A  ++  + F + G V
Sbjct: 599 HAGL-VNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFV 657

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W ALL A+    ++++ + +A  +  LE +    +V+L N+Y S G W+  + +R FM++
Sbjct: 658 WGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKD 717

Query: 501 RGLRKEAGCSWIEVEN 516
             ++KE G SWIE+++
Sbjct: 718 SKVKKEPGMSWIEIKD 733



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 134/484 (27%), Positives = 236/484 (48%), Gaps = 45/484 (9%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE+    +L+A S        +++H   + +GF S+ FV+  L+  Y K   L D+ ++F
Sbjct: 81  NEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLF 140

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             I + +VVSWN+L S YVQS    +A+ LF E+ RS I  + +S +  L AC  L    
Sbjct: 141 GGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGD 200

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           LG  IH  ++K  L+     AN L+DMY K G +E A+ VF ++   D++SWN++IA   
Sbjct: 201 LGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCV 260

Query: 182 RNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFG---------------------- 215
            +   +LA   L  +      P+  + +  +   A  G                      
Sbjct: 261 LHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLF 320

Query: 216 -------------DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                         ++DA     SMP  +  +WN++++GY       +A+ LF +M S+D
Sbjct: 321 AAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSED 380

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +  ++ T ST+L  +A L A+     IH+  IK G+ +   V ++LLD Y KC  ++ A 
Sbjct: 381 IDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEAS 440

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F     ++LV + +MIT Y++ GD  + ++L+ Q++   D++PD     ++L AC++ 
Sbjct: 441 KIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDA-DIKPDPFICSSLLNACANL 499

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV-W 441
              +++  +      K +G    +    S++ +  + G +  A R   E+   + G+V W
Sbjct: 500 S-AYEQGKQLHVHAIK-FGFMCDIFASNSLVNMYAKCGSIEDADRAFSEI--PNRGIVSW 555

Query: 442 RALL 445
            A++
Sbjct: 556 SAMI 559



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 210/447 (46%), Gaps = 42/447 (9%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           +LH +++K GF  +  +   L+  Y K      A K+  E  +  VVSW+SL+SGYVQ+G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
              +AL +F E+    +  + ++F S L AC     L +G  +H   V    E    +AN
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR------LP 197
            L+ MY KCG ++D+  +FG +++++++SWN++ +   ++     A G          +P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 198 NP---------------------------------DTISYNEVINGIAQFGDIEDAIMIL 224
           N                                  D  S N +++  ++ G+IE A+ + 
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVF 241

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             +  P+  SWN+I+ G V  +    AL L  EM+      + +T S+ L   A +    
Sbjct: 242 QDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKE 301

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  +HS +IK    + +  A  L+DMYSKC  ++ A   + S+ +K+++ WNA+I+GY+
Sbjct: 302 LGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYS 361

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           + GD    + LF ++ +  D+  +  T   VL + +   +   KV +   +++   GI  
Sbjct: 362 QCGDHLDAVSLFSKMFS-EDIDFNQTTLSTVLKSVA--SLQAIKVCKQIHTISIKSGIYS 418

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRE 431
                 S++   G+   +  A ++  E
Sbjct: 419 DFYVINSLLDTYGKCNHIDEASKIFEE 445



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 136/296 (45%), Gaps = 40/296 (13%)

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
           M +H+ ++K+   R   + N L+ +Y KC     A  +  E  + D++SW+S+++   +N
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 184 GNLELA----------------FGFLHRLP-----------------------NPDTISY 204
           G +E A                F F   L                          D    
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
           N ++   A+ G ++D+  +   +   N  SWN++ + YV      EA+ LF EM    + 
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM 180

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
            +E++ S +L+  AGL     G  IH  ++K GLD     A+AL+DMYSK G++E A ++
Sbjct: 181 PNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAV 240

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           F+ +   ++V+WNA+I G   +      + L +++K     +P+  T  + L AC+
Sbjct: 241 FQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKG-SGTRPNMFTLSSALKACA 295


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 159/514 (30%), Positives = 276/514 (53%), Gaps = 34/514 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++    +++A+S+L        +H   +K  F  ++++  +L+ FY     L+ A ++
Sbjct: 124 PNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERL 183

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I    VVSWNS+IS + Q      AL LF+++ER  +  ++ +    L+AC +   L
Sbjct: 184 FKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDL 243

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  + S I +  ++  + + N ++DMY KCGSV+DA  +F EM ++D+ SW       
Sbjct: 244 EFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSW------- 296

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                               TI    +++G A+ GD + A ++ ++MP    ++WN +++
Sbjct: 297 --------------------TI----MLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLIS 332

Query: 241 GYVNRNRVPEALHLFGEMQ-SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            Y    +  EAL +F E+Q SK    DE T  + LS  A L A+  G  IH  + ++G+ 
Sbjct: 333 AYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIV 392

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            +  + S+L+DMY+KCG +E A  +F S+  +++  W+AMI G   +G     I+LF ++
Sbjct: 393 LNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEM 452

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           +  + ++P+SVTF NVL ACSH  +  D+   +F  M   YG+ P ++H   M+ ++G+ 
Sbjct: 453 QEAK-VKPNSVTFTNVLCACSHAGL-VDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRA 510

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G +  A  +I E+       VW ALL A     ++++  +++ +++KLE  +    V+L 
Sbjct: 511 GFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLS 570

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
           N+Y   G W+  S +R  MR+  L+KE GCS IE
Sbjct: 571 NIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIE 604



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 11/171 (6%)

Query: 289 IHSCVIKQGLDASIVVASALL--DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
           +H+ +++ GL      AS L      S    ++ A ++F  + + NL TWN +I  YA +
Sbjct: 44  VHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASS 103

Query: 347 GDLTKVIELF-EQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
            D  +   +F + L    DL P+  TF  V+ A S  ++   +V      M         
Sbjct: 104 SDPFQSFVIFLDLLDKCEDL-PNKFTFPFVIKAAS--ELKASRVGTAVHGMAIKLSFGMD 160

Query: 406 VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV-WRALLS--ASGACSD 453
           +    S++R  G  G++  A+R+ +  G     VV W +++S  A G C +
Sbjct: 161 LYILNSLVRFYGACGDLSMAERLFK--GISCKDVVSWNSMISAFAQGNCPE 209


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 149/488 (30%), Positives = 276/488 (56%), Gaps = 9/488 (1%)

Query: 30  LKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKAL 89
           ++  FL + F+S +       +NS+      F ++  P+V  +N++I G+V  G   +AL
Sbjct: 68  IQDCFLVHQFISASF-----ALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRAL 122

Query: 90  NLFVE-LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
             +V  LE S +   +Y+F+S + AC  + +++LG  +H  I K   E  + +   L+D 
Sbjct: 123 QCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDF 182

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVI 208
           Y K   + +A  VF EM ++D  +W ++++A AR G+++ A      +P  +T ++N +I
Sbjct: 183 YSKLEILSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTMI 242

Query: 209 NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268
           +G  + G++E A ++ + MP+ +  SW +++T Y    +  +AL ++ EM+   +  DE 
Sbjct: 243 DGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEV 302

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           T ST+ S  A + AL  G  IH  V+ QGL+  + + SAL+DMY+KCG ++++  +F  L
Sbjct: 303 TMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKL 362

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDK 388
             KNL  WNA+I G A +G   K + +F  ++  + + P+ VTF+++L+AC+H  +  D+
Sbjct: 363 TDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREK-IMPNGVTFISILSACTHAGL-VDE 420

Query: 389 VSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSAS 448
               F SMT+DY I+P + H   M+ ++ + G +  A  +I+ + F    ++W ALL+  
Sbjct: 421 GRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGC 480

Query: 449 GACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE-A 507
               + ++A  +  +++ LE  +   Y +L ++Y    +W   + +R+ M+E+G+ K+  
Sbjct: 481 KLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYP 540

Query: 508 GCSWIEVE 515
           G SWIE+E
Sbjct: 541 GSSWIELE 548



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 148/344 (43%), Gaps = 103/344 (29%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLAD---- 56
           P  Y    L++A + +      Q +HC+I K GF S++FV TAL+ FY K+  L++    
Sbjct: 136 PTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKV 195

Query: 57  ---------------------------AHKMFVEIPQPSVVSWNSLISGYV--------- 80
                                      A K+F E+P+ +  +WN++I GY          
Sbjct: 196 FDEMCERDAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAE 255

Query: 81  ----------------------QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
                                 Q+ +Y+ AL ++ E+  + I  D  + ++  +AC  +G
Sbjct: 256 LLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIG 315

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           +L+LG  IH  ++   L   V I + L+DMY KCGS++ ++ +F ++ DK++  WN+VI 
Sbjct: 316 ALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIE 375

Query: 179 ASARNGNLELA---FGFLHR---LPN---------------------------------- 198
             A +G  E A   F  + R   +PN                                  
Sbjct: 376 GLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIR 435

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMP-SPNSSSWNSILTG 241
           PD   Y  +++ +++ G + +A+ ++ SM   PNS  W ++L G
Sbjct: 436 PDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNG 479



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 118/265 (44%), Gaps = 30/265 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +  +  A + +G     +++H Y++  G   +V++ +AL+  Y K  SL  +  +
Sbjct: 299 PDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLI 358

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++   ++  WN++I G    G   KAL +F  +ER +I  +  +F S L+AC   G +
Sbjct: 359 FFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLV 418

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G +    + + Y +   +    C++DM  K G + +A+ +   M  + + I W +++ 
Sbjct: 419 DEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLN 478

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
               +GN E+A                          D  + +MIL  M   NS  +N +
Sbjct: 479 GCKLHGNCEIA-------------------------EDAVEQLMILEPM---NSGHYNLL 510

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDV 263
           ++ Y       E  H+   M+ K V
Sbjct: 511 VSMYAEEKDWMEVAHIRSMMKEKGV 535


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 156/496 (31%), Positives = 256/496 (51%), Gaps = 36/496 (7%)

Query: 54  LADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
           + +AHK+F +IP+P+   WN++  GY Q+  ++  + LF +++  ++  + ++F   L +
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK----- 168
           C ++ +L+ G  +H  ++K        +A  LIDMY   G++  A  VFGEMI++     
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 169 --------------------------DIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
                                     DI+ WN++I+      ++  A     ++PN D +
Sbjct: 121 TAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVM 180

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM--QS 260
           S+N V+NG A  GD+     +   MP  N  SWN+++ GY       E L  F  M    
Sbjct: 181 SWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDG 240

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             VP D  T   +LS  A L AL  G  +H      G   ++ V +AL+DMY+KCG VE 
Sbjct: 241 TVVPNDA-TLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVET 299

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F+S+  K+L++WN +I G A +G     + LF  +K   +  PD +TF+ +L AC+
Sbjct: 300 ALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGE-NPDGITFIGILCACT 358

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H  +  D  S YF+SMT DY I P +EH   ++ L+G+ G +  A   IR++   +  V+
Sbjct: 359 HMGLVEDGFS-YFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVI 417

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W ALL A     ++++A ++  ++I+ E  +   YVML N+Y   G W   + ++  MR+
Sbjct: 418 WAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRD 477

Query: 501 RGLRKEAGCSWIEVEN 516
            G +K  GCS IEV +
Sbjct: 478 TGFKKLPGCSLIEVND 493



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 6/192 (3%)

Query: 41  STALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE-LERSE 99
           +T L G+    + +A   ++F E+P+ +V SWN+LI GY ++G + + L+ F   L    
Sbjct: 183 NTVLNGYASNGDVMA-CERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGT 241

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159
           +  +  +  + L+AC +LG+L LG  +H     +  +  V + N L+DMY KCG VE A+
Sbjct: 242 VVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETAL 301

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFG 215
            VF  M +KD+ISWN++I   A +G+   A      +     NPD I++  ++      G
Sbjct: 302 DVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMG 361

Query: 216 DIEDAIMILSSM 227
            +ED      SM
Sbjct: 362 LVEDGFSYFKSM 373



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 124/276 (44%), Gaps = 18/276 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+  L ++L A + LG     + +H Y    G+  NV+V  ALM  Y K   +  A  +
Sbjct: 244 PNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDV 303

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    ++SWN++I G    G    ALNLF  ++ +    D  +F   L AC  +G +
Sbjct: 304 FKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLV 363

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G +    +   YS+   +    C++D+ G+ G +  A+    +M I+ D + W +++ 
Sbjct: 364 EDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLG 423

Query: 179 ASARNGNLELAFGFLHRL-----PNPDTISYNEVINGIAQFGDIEDAIMI--------LS 225
           A     N+ELA   L +L      NP   +Y  + N    FG  +D   +          
Sbjct: 424 ACRVYKNVELAELALEKLIEFEPKNP--ANYVMLSNIYGDFGRWKDVARLKVAMRDTGFK 481

Query: 226 SMPSPNSSSWNSILTGYVNRN-RVPEALHLFGEMQS 260
            +P  +    N  L  + + + R PE   ++G +++
Sbjct: 482 KLPGCSLIEVNDYLVEFYSLDERHPEKEQIYGTLRT 517


>gi|297794367|ref|XP_002865068.1| hypothetical protein ARALYDRAFT_920083 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310903|gb|EFH41327.1| hypothetical protein ARALYDRAFT_920083 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 659

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 162/538 (30%), Positives = 292/538 (54%), Gaps = 27/538 (5%)

Query: 1   PNEYVLFHLLRA---SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
           P+  VL   L+A   SS++G   Y + LH Y  K+  L++VFV T L+  Y +   +   
Sbjct: 85  PDTSVLSVALKACGQSSNIG---YGESLHAYAFKTSLLTSVFVGTNLLNMYMRTGKIDKG 141

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
            ++F E+   + V+W +++SG V++G++++ L  F E+ RS+  +D ++F +AL AC +L
Sbjct: 142 CRIFTEMQFRNTVTWTAIVSGMVEAGRHKEGLTYFSEMSRSKGLSDDFAFATALKACARL 201

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
             ++ G  IH+ ++    +  + + N LI+MY +CG + D + +F  M ++D+ SW ++I
Sbjct: 202 RQVKYGKEIHTHVIVRGSDASLCVVNSLINMYTECGEMHDGVHLFESMSERDVFSWTTLI 261

Query: 178 AASARNGNLELAFGFLHRLPN------------PDTISY-NEVINGIAQFGDIEDAIMIL 224
            A ++ G  E A     ++               D++S  N ++   +  G ++ A ++ 
Sbjct: 262 DAYSQMGQEEKAVATFLKIEIFRRTSQWTYFCLGDSLSVSNSMMKMYSTCGKLDSASVLF 321

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             M   +  +W++I+ GY       E    F  M+       +   +++LS    ++ L 
Sbjct: 322 QGMRRRDIITWSTIIGGYSQAGLGEEVFMCFSWMRQAGPKPTDPALASLLSVSGTMAVLE 381

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  +H+  +  GL+ +  + SAL++MYSKCG +E A  +F      ++V+  AMI GYA
Sbjct: 382 QGRQVHALALYLGLEQNSTIRSALINMYSKCGSIEEASKIFEETDTDDIVSLTAMINGYA 441

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT---DIPFDKVSEYFESMTKDYG 401
            +G+  + I+LFE+   V  L+PD+VTF++VL ACSH+   D+ F     YF  M  +Y 
Sbjct: 442 EHGNTKEAIDLFEKSLKV-GLRPDTVTFISVLTACSHSGQLDLGF----RYFNLMQDEYN 496

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I+P  EH   M+ L+ + G +  A++MI E+ +    VVW  LL+A  A  D +  R +A
Sbjct: 497 IRPVKEHYGCMVDLLCRAGRLSDAEKMINEMPWKKDDVVWTTLLNACKAKGDTERGRRAA 556

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAA 519
             +++L+  S+  +V L N+Y+S G  + A+ +R  M+ +G+ K  G S I++ + A+
Sbjct: 557 ERILELDPTSETAFVTLANIYSSTGKLEEAAHVRKAMKSKGVIKVPGWSSIKIMDRAS 614



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/498 (20%), Positives = 211/498 (42%), Gaps = 71/498 (14%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE-RSEIYADAYSFT 108
           +I++   A  +F ++P   +VSW ++I+GYV +    +ALNLF  L     +  D    +
Sbjct: 32  RISNQGAARHLFDQMPHRDIVSWTAIINGYVTAANSFEALNLFSALLFDPAVSPDTSVLS 91

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
            AL ACGQ  ++  G ++H+   K SL   V +   L++MY + G ++    +F EM  +
Sbjct: 92  VALKACGQSSNIGYGESLHAYAFKTSLLTSVFVGTNLLNMYMRTGKIDKGCRIFTEMQFR 151

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMIL 224
           + ++W ++++     G  +    +   +       D  ++   +   A+   ++    I 
Sbjct: 152 NTVTWTAIVSGMVEAGRHKEGLTYFSEMSRSKGLSDDFAFATALKACARLRQVKYGKEIH 211

Query: 225 SSMPSPNSSS----WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA-- 278
           + +    S +     NS++  Y     + + +HLF  M  +DV    ++++T++   +  
Sbjct: 212 THVIVRGSDASLCVVNSLINMYTECGEMHDGVHLFESMSERDV----FSWTTLIDAYSQM 267

Query: 279 GLSALTWGMLIHSCVIKQG-------LDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
           G         +   + ++        L  S+ V+++++ MYS CG+++ A  +F+ + R+
Sbjct: 268 GQEEKAVATFLKIEIFRRTSQWTYFCLGDSLSVSNSMMKMYSTCGKLDSASVLFQGMRRR 327

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE 391
           +++TW+ +I GY++ G   +V   F                                   
Sbjct: 328 DIITWSTIIGGYSQAGLGEEVFMCF----------------------------------- 352

Query: 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQR---MIRELGFGSYGVVWRALLSAS 448
              S  +  G KPT     S++ + G    + + ++   +   LG      +  AL++  
Sbjct: 353 ---SWMRQAGPKPTDPALASLLSVSGTMAVLEQGRQVHALALYLGLEQNSTIRSALINMY 409

Query: 449 GACSDLDVARISAAEVIKLEGDSDYVYVM--LCNLYTSHGNWDVASVMRNFMRERGLRKE 506
             C       I  A  I  E D+D +  +  + N Y  HGN   A  +     + GLR +
Sbjct: 410 SKC-----GSIEEASKIFEETDTDDIVSLTAMINGYAEHGNTKEAIDLFEKSLKVGLRPD 464

Query: 507 AGCSWIEVENVAAHSSNI 524
              ++I V    +HS  +
Sbjct: 465 T-VTFISVLTACSHSGQL 481



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 139/342 (40%), Gaps = 34/342 (9%)

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEV-INGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
           + RNG      G + R     +IS  E  +  I +  +   A  +   MP  +  SW +I
Sbjct: 4   TVRNG------GTIQRFCTAASISLLEKPVEKIVRISNQGAARHLFDQMPHRDIVSWTAI 57

Query: 239 LTGYVNRNRVPEALHLFGEMQ-SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           + GYV      EAL+LF  +     V  D    S  L      S + +G  +H+   K  
Sbjct: 58  INGYVTAANSFEALNLFSALLFDPAVSPDTSVLSVALKACGQSSNIGYGESLHAYAFKTS 117

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
           L  S+ V + LL+MY + G+++    +F  +  +N VTW A+++G    G   + +  F 
Sbjct: 118 LLTSVFVGTNLLNMYMRTGKIDKGCRIFTEMQFRNTVTWTAIVSGMVEAGRHKEGLTYFS 177

Query: 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC---SMIR 414
           ++   + L  D   F   L AC+       +  +Y + +     ++ +    C   S+I 
Sbjct: 178 EMSRSKGLS-DDFAFATALKACARL-----RQVKYGKEIHTHVIVRGSDASLCVVNSLIN 231

Query: 415 LMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE------ 468
           +  + GE+     +   +        W  L+ A    S +     + A  +K+E      
Sbjct: 232 MYTECGEMHDGVHLFESMSERDV-FSWTTLIDAY---SQMGQEEKAVATFLKIEIFRRTS 287

Query: 469 -------GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
                  GDS  V   +  +Y++ G  D ASV+   MR R +
Sbjct: 288 QWTYFCLGDSLSVSNSMMKMYSTCGKLDSASVLFQGMRRRDI 329


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 163/557 (29%), Positives = 289/557 (51%), Gaps = 47/557 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y+L  +L A S L +    +Q+H +IL+ G   +  +   L+  Y K   +  AHK+
Sbjct: 247 PDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKL 306

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P  +++SW +L+SGY Q+  +++A+ LF  + +  +  D Y+ +S L +C  L +L
Sbjct: 307 FNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHAL 366

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H+  +K +L     + N LIDMY KC  + DA  VF      D++ +N++I   
Sbjct: 367 GFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGY 426

Query: 181 ARNGN-------LELAFGFLHRLPNPDTISYNEVINGIAQFGDI---------------- 217
           +R G        L +      RL  P  +++  ++   A    +                
Sbjct: 427 SRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLN 486

Query: 218 -------------------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
                              +D+ ++   M   +   WNS+  GYV ++   EAL+LF E+
Sbjct: 487 LDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLEL 546

Query: 259 Q-SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           Q S++ P DE+TF+ M++    L+++  G   H  ++K+GL+ +  + +ALLDMY+KCG 
Sbjct: 547 QLSRERP-DEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGS 605

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
            E A   F S   +++V WN++I+ YA +G+  K +++ E++ +   ++P+ +TF+ VL+
Sbjct: 606 PEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMS-EGIEPNYITFVGVLS 664

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           ACSH  +  D + + FE M + +GI+P  EH   M+ L+G+ G + +A+ +I ++     
Sbjct: 665 ACSHAGLVEDGLKQ-FELMLR-FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPA 722

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497
            +VWR+LLS      ++++A  +A   I  +      + ML N+Y S G W  A  +R  
Sbjct: 723 AIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRER 782

Query: 498 MRERGLRKEAGCSWIEV 514
           M+  G+ KE G SWI +
Sbjct: 783 MKVEGVVKEPGRSWIGI 799



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 128/424 (30%), Positives = 212/424 (50%), Gaps = 49/424 (11%)

Query: 1   PNEYVLFHLLRASSDLG----WDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLAD 56
           PNEY+L   ++A S L     W  +  QL  +++KSGF  +V+V T L+ FY K  ++  
Sbjct: 144 PNEYILSSFIQACSGLDGRGRWMVF--QLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDY 201

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A  +F  +P+ S V+W ++ISG V+ G+   +L LF +L    +  D Y  ++ L+AC  
Sbjct: 202 ARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSI 261

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           L  L+ G  IH+ I++Y LE    + N LID Y KCG V  A  +F  M +K+IISW ++
Sbjct: 262 LPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTL 321

Query: 177 IAASARNG----NLEL-----AFGF----------------LHRLP-------------- 197
           ++   +N      +EL      FG                 LH L               
Sbjct: 322 LSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANL 381

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN---RVPEALHL 254
             D+   N +I+  A+   + DA  +     + +   +N+++ GY        + EAL++
Sbjct: 382 GNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNI 441

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F +M+ + +     TF ++L   A L++L     IH  + K GL+  I   SAL+D+YS 
Sbjct: 442 FRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSN 501

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           C  ++ +  +F  +  K+LV WN+M  GY +  +  + + LF +L+  R+ +PD  TF N
Sbjct: 502 CYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRE-RPDEFTFAN 560

Query: 375 VLAA 378
           ++ A
Sbjct: 561 MVTA 564



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 206/432 (47%), Gaps = 49/432 (11%)

Query: 3   EYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFV 62
           E+     LRAS DL    Y   +H  I+  G   + ++S  L+  Y +   +  A K+F 
Sbjct: 46  EFARLLQLRASDDLL--HYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFE 103

Query: 63  EIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS-EIYADAYSFTSALAACGQLGSLQ 121
           ++P+ ++VSW++++S     G Y ++L +F+E  R+ +   + Y  +S + AC  L    
Sbjct: 104 KMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRG 163

Query: 122 LGMA--IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
             M   + S +VK   +R V +   LID Y K G+++ A  VF  + +K  ++W ++I+ 
Sbjct: 164 RWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISG 223

Query: 180 SARNG----NLELAFGFLHRLPNPD--------------------------TISY----- 204
             + G    +L+L +  +     PD                           + Y     
Sbjct: 224 CVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMD 283

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +I+   + G +  A  + + MP+ N  SW ++L+GY       EA+ LF  M  
Sbjct: 284 ASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSK 343

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             +  D Y  S++L+  A L AL +G  +H+  IK  L     V ++L+DMY+KC  +  
Sbjct: 344 FGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTD 403

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNG---DLTKVIELFEQLKTVRDLQPDSVTFLNVL- 376
           A  +F      ++V +NAMI GY+R G   +L + + +F  ++  R ++P  +TF+++L 
Sbjct: 404 ARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMR-FRLIRPSLLTFVSLLR 462

Query: 377 AACSHTDIPFDK 388
           A+ S T +   K
Sbjct: 463 ASASLTSLGLSK 474



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 119/253 (47%), Gaps = 11/253 (4%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM- 258
           DT   N +IN  ++ G +  A  +   MP  N  SW+++++   +     E+L +F E  
Sbjct: 78  DTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFW 137

Query: 259 -QSKDVPMDEYTFSTMLSGIAGLSALTWGML--IHSCVIKQGLDASIVVASALLDMYSKC 315
              KD P +EY  S+ +   +GL      M+  + S ++K G D  + V + L+D Y K 
Sbjct: 138 RTRKDSP-NEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKD 196

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G ++ A  +F +L  K+ VTW  MI+G  + G     ++LF QL    ++ PD      V
Sbjct: 197 GNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLME-DNVVPDGYILSTV 255

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L+ACS   +PF +  +   +    YG++        +I    + G V  A ++    G  
Sbjct: 256 LSACS--ILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFN--GMP 311

Query: 436 SYGVV-WRALLSA 447
           +  ++ W  LLS 
Sbjct: 312 NKNIISWTTLLSG 324


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 172/563 (30%), Positives = 299/563 (53%), Gaps = 56/563 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSG-FLSNVFVSTALMG-FYRKINSLADAH 58
           PN+Y    ++RA S+  +    +    +++K+G F S+V V  +L+  F +  NS  +A+
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAY 223

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           K+F ++ + +VV+W  +I+  +Q G  R+A+  F+++  S   +D ++ +S  +AC +L 
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELE 283

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC---GSVEDAIGVFGEMIDKDIISWNS 175
           +L LG  +HS  ++  L   V  +  L+DMY KC   GSV+D   VF  M D  ++SW +
Sbjct: 284 NLSLGKQLHSWAIRSGLVDDVECS--LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTA 341

Query: 176 VIAASARNGNLEL------------------------AFGFLHRLPNP------------ 199
           +I    +N NL                          AF     L +P            
Sbjct: 342 LITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFK 401

Query: 200 -----DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
                ++   N VI+   +   +EDA     S+   N  S+N+ L G        +A  L
Sbjct: 402 RGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKL 461

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
             E+  +++ +  +TF+++LSG+A + ++  G  IHS V+K GL  +  V +AL+ MYSK
Sbjct: 462 LSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSK 521

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG ++ A  +F  +  +N+++W +MITG+A++G   +V+E F Q+     ++P+ VT++ 
Sbjct: 522 CGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQM-IEEGVKPNEVTYVA 580

Query: 375 VLAACSHTDIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431
           +L+ACSH  +    VSE   +F SM +D+ IKP +EH   M+ L+ + G +  A   I  
Sbjct: 581 ILSACSHVGL----VSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINT 636

Query: 432 LGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA 491
           + F +  +VWR  L A    S+ ++ +++A ++++L+ +    Y+ L N+Y   G W+ +
Sbjct: 637 MPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEES 696

Query: 492 SVMRNFMRERGLRKEAGCSWIEV 514
           + MR  M+ER L KE GCSWIEV
Sbjct: 697 TEMRRKMKERNLVKEGGCSWIEV 719



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 130/551 (23%), Positives = 226/551 (41%), Gaps = 102/551 (18%)

Query: 66  QPSVVSW----NSLISGYVQSGKYRKALNLFVELERSEIYA-DAYSFTSALAACGQLGSL 120
           QPSV +     + LI  ++ +G  R A++    + R  I   D+ +F+S L +C +    
Sbjct: 19  QPSVSNRINVADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDF 78

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI---DKDIISWNSVI 177
           +LG  +H++++++ +E   V+ N LI +Y K G    A  VF  M     +D++SW++++
Sbjct: 79  RLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMM 138

Query: 178 AASARNGN----LELAFGFLHRLPNPDTISYNEVIN--------GIAQF----------- 214
           A    NG     +++   FL     P+   Y  VI         G+ +            
Sbjct: 139 ACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHF 198

Query: 215 ------------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
                                E+A  +   M   N  +W  ++T  +      EA+  F 
Sbjct: 199 ESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFL 258

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC- 315
           +M       D++T S++ S  A L  L+ G  +HS  I+ GL     V  +L+DMY+KC 
Sbjct: 259 DMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCS 316

Query: 316 --GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL-TKVIELFEQLKTVRDLQPDSVTF 372
             G V+    +F  +   ++++W A+ITGY +N +L T+ I LF ++ T   ++P+  TF
Sbjct: 317 ADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTF 376

Query: 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI--- 429
            +   AC +   P  +V +         G+        S+I +  +   +  AQR     
Sbjct: 377 SSAFKACGNLSDP--RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESL 434

Query: 430 ---------------------------------RELGFGSYGVVWRALLSASGACSDLDV 456
                                            RELG  ++   + +LLS       +  
Sbjct: 435 SEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAF--TFASLLSGVANVGSIRK 492

Query: 457 ARISAAEVIKLEGDSDY-VYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE-V 514
                ++V+KL    +  V   L ++Y+  G+ D AS + NFM  R +      SW   +
Sbjct: 493 GEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNV-----ISWTSMI 547

Query: 515 ENVAAHSSNIR 525
              A H   IR
Sbjct: 548 TGFAKHGFAIR 558



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 114/505 (22%), Positives = 212/505 (41%), Gaps = 64/505 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQL-HCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P + V F  L  S     D    +L H  +++     +  +  +L+  Y K    A A  
Sbjct: 59  PMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAED 118

Query: 60  MFVEIP---QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           +F  +    +  VVSW+++++ Y  +G+   A+ +FVE     +  + Y +T+ + AC  
Sbjct: 119 VFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSN 178

Query: 117 LGSLQLGMAIHSKIVKYS-LERGVVIANCLIDMYGKC-GSVEDAIGVFGEMIDKDIISWN 174
              + +G      ++K    E  V +   LIDM+ K   S E+A  VF +M + ++++W 
Sbjct: 179 SDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWT 238

Query: 175 SVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQF---------------- 214
            +I    + G    A  F   +       D  + + V +  A+                 
Sbjct: 239 LMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRS 298

Query: 215 --------------------GDIEDAIMILSSMPSPNSSSWNSILTGYV-NRNRVPEALH 253
                               G ++D   +   M   +  SW +++TGY+ N N   EA++
Sbjct: 299 GLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAIN 358

Query: 254 LFGEMQSK-DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
           LF EM ++  V  + +TFS+       LS    G  +     K+GL ++  VA++++ M+
Sbjct: 359 LFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMF 418

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
            K  ++E A   F SL  KNLV++N  + G  RN +  +  +L  ++ T R+L   + TF
Sbjct: 419 VKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEI-TERELGVSAFTF 477

Query: 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
            ++L+  +  ++   +  E   S     G+      C ++I +  + G +  A R+   +
Sbjct: 478 ASLLSGVA--NVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFM 535

Query: 433 -------------GFGSYGVVWRAL 444
                        GF  +G   R L
Sbjct: 536 ENRNVISWTSMITGFAKHGFAIRVL 560


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 165/553 (29%), Positives = 287/553 (51%), Gaps = 39/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +     L   ++ G      Q+H  ++K+G    + VS +L+  Y K  ++  A  +
Sbjct: 196 PNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARIL 255

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +    SVV+WNS+ISGY  +G   +AL +F  +  + +     SF S +  C  L  L
Sbjct: 256 FDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKEL 315

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
           +    +H  +VKY       I   L+  Y KC ++ DA+ +F E     +++SW ++I+ 
Sbjct: 316 RFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISG 375

Query: 180 SARNGNLELAFGFLHRL------PNPDT----------ISYNEV---------------- 207
             +N   E A G    +      PN  T          IS +EV                
Sbjct: 376 FLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVG 435

Query: 208 ---INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
              ++   + G +++A  + S + + +  +W+++L GY        A+ +F E+    V 
Sbjct: 436 TALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVK 495

Query: 265 MDEYTFSTMLSGIAGLSA-LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
            +E+TFS++L+  A  +A +  G   H   IK  LD+S+ V+SALL MY+K G +E A+ 
Sbjct: 496 PNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEE 555

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F+    K+LV+WN+MI+GYA++G   K +++F+++K  R ++ DSVTF+ V AAC+H  
Sbjct: 556 VFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKK-RKVKMDSVTFIGVFAACTHAG 614

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
           +  ++  +YF+ M +D  I PT EH   M+ L  + G++ +A ++I  +   +   +WR 
Sbjct: 615 L-VEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRT 673

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           +L+A       ++ R++A ++I +  +    YV+L N+Y   G+W   + +R  M ER +
Sbjct: 674 ILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNV 733

Query: 504 RKEAGCSWIEVEN 516
           +KE G SWIEV+N
Sbjct: 734 KKEPGYSWIEVKN 746



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 243/467 (52%), Gaps = 56/467 (11%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           +L+ S+ L  + + +QLHC  +K GFL +V V T+L+  Y K ++  D   +F E+ + +
Sbjct: 103 VLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERN 162

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           VV+W +LISGY ++    + L LF+ ++      ++++F +AL    + G    G+ +H+
Sbjct: 163 VVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHT 222

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-NLE 187
            +VK  L++ + ++N LI++Y KCG+V  A  +F +   K +++WNS+I+  A NG +LE
Sbjct: 223 VVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLE 282

Query: 188 LAFGFLHRL-------------------PNPDTISYNEVIN-GIAQFG-----DIEDAIM 222
            A G  + +                    N   + + E ++  + ++G     +I  A+M
Sbjct: 283 -ALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALM 341

Query: 223 ILSSMPSP---------------NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
           +  S                   N  SW ++++G++  +   EA+ LF EM+ K V  +E
Sbjct: 342 VAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNE 401

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
           +T+S +L+ +  +S       +H+ V+K   + S  V +ALLD Y K G+V+ A  +F  
Sbjct: 402 FTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSG 457

Query: 328 LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387
           +  K++V W+AM+ GYA+ G+    I++F +L T   ++P+  TF ++L  C+ T     
Sbjct: 458 IDNKDIVAWSAMLAGYAQAGETEAAIKIFSEL-TKGGVKPNEFTFSSILNVCAATTASMG 516

Query: 388 KVSEYFESMTKDYGIKPTVEH--CCS--MIRLMGQKGEVWRAQRMIR 430
           +  ++       + IK  ++   C S  ++ +  +KG +  A+ + +
Sbjct: 517 QGKQF-----HGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFK 558



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 166/362 (45%), Gaps = 41/362 (11%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           AH +F + P     S+ SL+ G+ + G+ ++A  LF+ ++   +  D   F+S L     
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           L     G  +H + +K+     V +   L+D Y K  + +D   VF EM ++++++W ++
Sbjct: 110 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTL 169

Query: 177 IAASARNGNLELAFGFLHRLPN----PDTISY---------------------------- 204
           I+  ARN   E       R+ +    P++ ++                            
Sbjct: 170 ISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGL 229

Query: 205 -------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
                  N +IN   + G++  A ++       +  +WNS+++GY       EAL +F  
Sbjct: 230 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 289

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M+   V + E +F++++   A L  L +   +H  V+K G      + +AL+  YSKC  
Sbjct: 290 MRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMA 349

Query: 318 VEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           +  A  +F+      N+V+W AMI+G+ +N    + + LF ++K  + ++P+  T+  +L
Sbjct: 350 MLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKR-KGVRPNEFTYSVIL 408

Query: 377 AA 378
            A
Sbjct: 409 TA 410



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 107/228 (46%), Gaps = 4/228 (1%)

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           +    P  +  S+ S+L G+    R  EA  LF  +Q   + MD   FS++L   A L  
Sbjct: 53  LFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATLCD 112

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
             +G  +H   IK G    + V ++L+D Y K    +   ++F  +  +N+VTW  +I+G
Sbjct: 113 ELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISG 172

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           YARN    +V+ LF +++     QP+S TF   L   +   +    +  +  ++    G+
Sbjct: 173 YARNSLNEEVLTLFMRMQD-EGTQPNSFTFAAALGVLAEEGVGGRGLQVH--TVVVKNGL 229

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450
             T+    S+I L  + G V +A+ +  +    S  V W +++S   A
Sbjct: 230 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSV-VTWNSMISGYAA 276


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 162/473 (34%), Positives = 255/473 (53%), Gaps = 41/473 (8%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD 103
           LMG Y K N L DA ++F +IP   ++SWN++ISGY Q G   +A  LF   E S +  D
Sbjct: 194 LMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLF---EESPV-RD 249

Query: 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
            +++T+ + A                                   Y + G +++A  VF 
Sbjct: 250 VFTWTAMVYA-----------------------------------YVQDGMLDEARRVFD 274

Query: 164 EMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMI 223
           EM  K  +S+N +IA  A+   +++       +P P+  S+N +I+G  Q GD+  A  +
Sbjct: 275 EMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNL 334

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              MP  +S SW +I+ GY       EA+++  EM+     ++  TF   LS  A ++AL
Sbjct: 335 FDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAAL 394

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H  V++ G +   +V +AL+ MY KCG ++ A  +F+ +  K++V+WN M+ GY
Sbjct: 395 ELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGY 454

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           AR+G   + + +FE + T   ++PD +T + VL+ACSHT +  D+ +EYF SM KDYGI 
Sbjct: 455 ARHGFGRQALTVFESMITA-GVKPDEITMVGVLSACSHTGLT-DRGTEYFHSMNKDYGIT 512

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           P  +H   MI L+G+ G +  AQ +IR + F      W ALL AS    ++++   +A  
Sbjct: 513 PNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEM 572

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           V K+E  +  +YV+L NLY + G W   S MR  MR+ G++K  G SW+EV+N
Sbjct: 573 VFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQN 625



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 176/359 (49%), Gaps = 34/359 (9%)

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  +P  + VS+N++ISGY+++ K+  A +LF ++     + D +S+   L    +   
Sbjct: 55  VFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMP----HKDLFSWNLMLTGYARNRR 110

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+    +   +     E+ VV  N ++  Y + G V++A  VF  M  K+ ISWN ++AA
Sbjct: 111 LRDARMLFDSMP----EKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAA 166

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
             R+G LE A        + + IS N ++ G  +   + DA  +   +P  +  SWN+++
Sbjct: 167 YVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMI 226

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI----- 294
           +GY     + +A  LF E   +DV    +T++ M+      + +  GML  +  +     
Sbjct: 227 SGYAQDGDLSQARRLFEESPVRDV----FTWTAMV-----YAYVQDGMLDEARRVFDEMP 277

Query: 295 -KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
            K+ +  ++++A      Y++  ++++   +F  +   N+ +WN MI+GY +NGDL +  
Sbjct: 278 QKREMSYNVMIAG-----YAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQAR 332

Query: 354 ELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412
            LF+ +      Q DSV++  ++A  +   + +++       M +D         CC++
Sbjct: 333 NLFDMMP-----QRDSVSWAAIIAGYAQNGL-YEEAMNMLVEMKRDGESLNRSTFCCAL 385



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 149/313 (47%), Gaps = 22/313 (7%)

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYN 205
           I  + + G  + A+ VF  M  ++ +S+N++I+   RN    LA     ++P+ D  S+N
Sbjct: 40  ISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWN 99

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
            ++ G A+   + DA M+  SMP  +  SWN++L+GYV    V EA  +F  M  K+   
Sbjct: 100 LMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKN--- 156

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
                S   +G+      +  +     + +   D  ++  + L+  Y K   +  A  +F
Sbjct: 157 -----SISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLF 211

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
             +  ++L++WN MI+GYA++GDL++   LFE+   VRD+     T+  ++ A    D  
Sbjct: 212 DQIPVRDLISWNTMISGYAQDGDLSQARRLFEE-SPVRDV----FTWTAMVYAYVQ-DGM 265

Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
            D+    F+ M +   +   V     MI    Q   +   + +  E+ F + G  W  ++
Sbjct: 266 LDEARRVFDEMPQKREMSYNV-----MIAGYAQYKRMDMGRELFEEMPFPNIG-SWNIMI 319

Query: 446 SASGACSDLDVAR 458
             SG C + D+A+
Sbjct: 320 --SGYCQNGDLAQ 330



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 92/182 (50%), Gaps = 2/182 (1%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV 69
           L A +D+      +Q+H  ++++G+     V  AL+G Y K   + +A+ +F  +    +
Sbjct: 385 LSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDI 444

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA-IHS 128
           VSWN++++GY + G  R+AL +F  +  + +  D  +    L+AC   G    G    HS
Sbjct: 445 VSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHS 504

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLE 187
               Y +        C+ID+ G+ G +E+A  +   M  + D  +W +++ AS  +GN+E
Sbjct: 505 MNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNME 564

Query: 188 LA 189
           L 
Sbjct: 565 LG 566


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 165/519 (31%), Positives = 267/519 (51%), Gaps = 35/519 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      LL+A + L +  Y   +  ++ K GF ++VFV  A + F+    S+  A ++
Sbjct: 119 PDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARRL 178

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL--ERSEIYADAYSFTSALAACGQLG 118
           F E P   VVSWN+LI GYV+SG  R+AL LF  L  +   +  D  +   A++ C Q+G
Sbjct: 179 FDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMG 238

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            L+LG  +H  +    +   V + N ++DMY KCGS                        
Sbjct: 239 DLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGS------------------------ 274

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
                  LELA     R+ N   +S+  +I G A+ G +EDA M+   MP  +   WN++
Sbjct: 275 -------LELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNAL 327

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           + GYV   +  EA+ LF EMQ   V  +E T   +LS  + L AL  GM +H  + +  L
Sbjct: 328 MAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQL 387

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
             S+ + ++L+DMY+KCG ++ A  +F+ +  KN +TW AMI G A +G   + IE F++
Sbjct: 388 YLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQR 447

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           +  +  LQPD +TF+ VL+AC H  +   +  ++F  M + Y ++  ++H   MI L+G+
Sbjct: 448 MIDL-GLQPDEITFIGVLSACCHAGL-VKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGR 505

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G +  A++++  +      VVW AL  A     ++ +   +A ++++L+     +YV+L
Sbjct: 506 AGHLDEAEQLVNTMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLL 565

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
            N+Y        A  +R  MR  G+ K  GCS IE+  V
Sbjct: 566 ANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGV 604



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 99/201 (49%), Gaps = 20/201 (9%)

Query: 220 AIMILSSMPSP--NSSSWNSILTGY--------VNRNRVPEALHLFGEMQSKDVPMDEYT 269
           A+ IL+S+PSP  ++S +N+             V+R+ +P    L     ++    D  T
Sbjct: 67  ALAILASLPSPPDSASPYNAAFRALSLCPHRHLVDRHCLPLYRALLCSSSARP---DHLT 123

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           F  +L   A L    +G  +   V K G  A + V +A +  +S  G + +A  +F    
Sbjct: 124 FPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARRLFDESP 183

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQL-KTVRDLQPDSVTFLNVLAACSHT-DIPFD 387
            +++V+WN +I GY R+G   + +ELF +L +  + ++PD VT +  ++ C+   D+   
Sbjct: 184 ARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELG 243

Query: 388 K-VSEYFESMTKDYGIKPTVE 407
           K + E+ +S     G++ TV 
Sbjct: 244 KRLHEFVDS----KGVRCTVR 260


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 165/496 (33%), Positives = 264/496 (53%), Gaps = 36/496 (7%)

Query: 23  QQLHCYILKSGFL-SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           + +HC  LK GF+  +V V  AL+ FY    SL DA K+F E+P+  VVSW +L+ GY +
Sbjct: 162 EAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYAR 221

Query: 82  SGKYRKALNLFVELER-SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           +G   +A  LF  +     +  +A +  +A++A GQ+G L  G+ +H  + +  + R V 
Sbjct: 222 AGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVN 281

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           + N L+DM+GKCG V  A  VF  M  KD+ SW S++                       
Sbjct: 282 LDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMV----------------------- 318

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                   N  A+ GD+E A  +   MP  N  SW+ ++  Y   N+  EA+ LF EM +
Sbjct: 319 --------NAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIA 370

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIH-SCVIKQGLDASIVVASALLDMYSKCGQVE 319
             V   + T  ++LS  A L  L  G  I+ + ++   +  ++ + +AL+DM++KCG V 
Sbjct: 371 AGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVG 430

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F  +  +N+V+WN MI  +A +G   + I LFEQLK   ++ PD +TFL +LA+C
Sbjct: 431 EASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKG-ENIVPDQITFLGLLASC 489

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH+ +   +   YF+ M   Y I+P VEH   MI L+G+ G +  A  + R +   +   
Sbjct: 490 SHSGL-VSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEA 548

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
            W ALL+A     ++++    A ++++L+     +YV++  +Y S   WD   ++R  MR
Sbjct: 549 GWGALLNACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMR 608

Query: 500 ERGLRKEAGCSWIEVE 515
           +RG++K  GCS IEVE
Sbjct: 609 DRGVKKNPGCSSIEVE 624



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 147/352 (41%), Gaps = 59/352 (16%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L   + A   +G   +   LH Y+ + G   +V +  AL+  + K   +  A ++
Sbjct: 243 PNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREV 302

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA-----DAYS--------- 106
           F  +    V SW S+++ Y + G    A  LF ++ R  + +      AYS         
Sbjct: 303 FDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAV 362

Query: 107 -----------------FTSALAACGQLGSLQLGMAIHSK-IVKYSLERGVVIANCLIDM 148
                              S L+AC QLG L LG  I+   IV   +   V + N LIDM
Sbjct: 363 WLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDM 422

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISY 204
           + KCG V +A  +F EM +++++SWN++I A A +G  E A     +L      PD I++
Sbjct: 423 FAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITF 482

Query: 205 NEVINGIAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
             ++   +  G + +       M       P    +  ++        + EA  +     
Sbjct: 483 LGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEV----- 537

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           ++ +PM+        +  AG     WG L+++C +   ++    VA  L+++
Sbjct: 538 ARGMPME--------ADEAG-----WGALLNACRMHGNVEIGACVADKLVEL 576


>gi|255560453|ref|XP_002521241.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539509|gb|EEF41097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 662

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 167/509 (32%), Positives = 281/509 (55%), Gaps = 46/509 (9%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFV-------------- 93
           Y K   + +A  +F  +P+ + VSWN+++SG++Q+G   +A+  F               
Sbjct: 153 YAKNGRMDEALGLFNTMPEKNSVSWNAMVSGFLQNGDVVRAIEFFKRMPERDVTSLSALV 212

Query: 94  -------ELERSE-IYAD-----------AYSFTSALAACGQLGSLQLGMAIHSKIVKYS 134
                  EL+++E I  D            +++ + +A  GQ G +     +  KI  Y+
Sbjct: 213 SGLIQNSELDQAERILLDYGNNGGSKEYLVHAYNTLIAGYGQRGRVDEAQNLFDKIPFYN 272

Query: 135 ---------LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN 185
                     ER VV  N +I  Y K G V  A  +F +M D+D  SWN++I+      +
Sbjct: 273 DQGKGRTGRFERNVVSWNTMIMCYVKAGDVISARKLFDQMPDRDSFSWNTMISGYVHVLD 332

Query: 186 LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245
           +E A    H++P+PDT+S+N +I+G AQ G +E A      MP  N  SWNS++ GY   
Sbjct: 333 MEEASNLFHKMPSPDTLSWNLMISGYAQSGSLELAHDFFERMPQKNLVSWNSVIAGYEKN 392

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
                A++LF +MQ +    D +T S++LS  +G+  L  GM IH  V K  +   + + 
Sbjct: 393 GDYIGAINLFIQMQVEGEKSDRHTLSSLLSVSSGIVDLQLGMQIHQLVSKTVI-PDVPLN 451

Query: 306 SALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
           +AL+ MYS+CG +  A ++F  +  +K +++WNAMI GYA +G  T+ +ELF+ +++ + 
Sbjct: 452 NALITMYSRCGAIFEARTIFYEMKLQKEVISWNAMIGGYASHGYATEALELFKLMRSFK- 510

Query: 365 LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424
           +QP  +TF++VL AC+H  +  ++    FESM  DYG++P VEH  S++ ++G++G++  
Sbjct: 511 VQPTYITFISVLNACAHAGL-VEEGRRIFESMVSDYGVEPRVEHFASLVDIVGRQGQLEE 569

Query: 425 AQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484
           A  +I  +       VW ALL AS   +++++AR++A  ++KLE DS   Y++L N+Y  
Sbjct: 570 ALDLINSMTIEPDKAVWGALLGASRVHNNVEMARVAAEALMKLEPDSSVPYILLYNMYVD 629

Query: 485 HGNWDVASVMRNFMRERGLRKEAGCSWIE 513
            G WD A+ +R+ M    ++KEA  SW++
Sbjct: 630 VGQWDNAAEIRSMMERNNIKKEAAISWVD 658



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 201/461 (43%), Gaps = 69/461 (14%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL 95
           SN++ S   +  + +   + +A  +F ++ + + V+WNS+ISGYV+ G+  KA  LF E+
Sbjct: 45  SNLYSSNKKISHFTRTGRINEARALFDKLERRNTVTWNSMISGYVKRGEMTKARKLFDEM 104

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
              ++ +      S   +C     ++ G  +  K+     ER  V  N +I  Y K G +
Sbjct: 105 PERDVVSWNL-IISGYVSCRGKRFIEEGRNLFDKMP----ERCCVSWNTMISGYAKNGRM 159

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS------------ 203
           ++A+G+F  M +K+ +SWN++++   +NG++  A  F  R+P  D  S            
Sbjct: 160 DEALGLFNTMPEKNSVSWNAMVSGFLQNGDVVRAIEFFKRMPERDVTSLSALVSGLIQNS 219

Query: 204 -------------------------YNEVINGIAQFGDIEDAIMILSSMP---------- 228
                                    YN +I G  Q G +++A  +   +P          
Sbjct: 220 ELDQAERILLDYGNNGGSKEYLVHAYNTLIAGYGQRGRVDEAQNLFDKIPFYNDQGKGRT 279

Query: 229 ---SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG-IAGLSALT 284
                N  SWN+++  YV    V  A  LF +M  +    D ++++TM+SG +  L    
Sbjct: 280 GRFERNVVSWNTMIMCYVKAGDVISARKLFDQMPDR----DSFSWNTMISGYVHVLDMEE 335

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
              L H       L  +++++      Y++ G +E+A   F  + +KNLV+WN++I GY 
Sbjct: 336 ASNLFHKMPSPDTLSWNLMISG-----YAQSGSLELAHDFFERMPQKNLVSWNSVIAGYE 390

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           +NGD    I LF Q++   +          +  +    D+          S T    + P
Sbjct: 391 KNGDYIGAINLFIQMQVEGEKSDRHTLSSLLSVSSGIVDLQLGMQIHQLVSKT----VIP 446

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
            V    ++I +  + G ++ A+ +  E+      + W A++
Sbjct: 447 DVPLNNALITMYSRCGAIFEARTIFYEMKLQKEVISWNAMI 487


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 158/514 (30%), Positives = 266/514 (51%), Gaps = 33/514 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    LL+  +      Y + L  + +K GF SN+FV  A +  +     +  A K+
Sbjct: 105 PDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKV 164

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F       VV+WN ++SGY +  +++K+  LF+E+E+  +  ++ +    L+AC +L  L
Sbjct: 165 FDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDL 224

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  I+  I    +ER +++ N LIDM+  CG +++A  VF  M ++D+          
Sbjct: 225 EGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDV---------- 274

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                                IS+  ++ G A  G I+ A      +P  +  SW +++ 
Sbjct: 275 ---------------------ISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMID 313

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GY+  NR  EAL LF EMQ  +V  DE+T  ++L+  A L AL  G  + + + K  +  
Sbjct: 314 GYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKN 373

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
              V +AL+DMY KCG V  A  +F+ +  K+  TW AMI G A NG   + + +F  + 
Sbjct: 374 DTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMI 433

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
               + PD +T++ VL AC+H  +  +K   +F SMT  +GIKP V H   M+ L+G+ G
Sbjct: 434 EA-SITPDEITYIGVLCACTHAGM-VEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAG 491

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
            +  A  +I  +      +VW +LL A     ++ +A ++A ++++LE ++  VYV+LCN
Sbjct: 492 RLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCN 551

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           +Y +   W+    +R  M ERG++K  GCS +E+
Sbjct: 552 IYAACKRWENLRQVRKLMMERGIKKTPGCSLMEL 585



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 1/166 (0%)

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G +  A  +  ++P P    WN+++ GY   N     + ++  M + ++  D +TF  +L
Sbjct: 55  GKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLL 114

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
            G     AL +G ++ +  +K G D+++ V  A + M+S C  V++A  +F       +V
Sbjct: 115 KGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVV 174

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           TWN M++GY R     K   LF +++  R + P+SVT + +L+ACS
Sbjct: 175 TWNIMLSGYNRVKQFKKSKMLFIEMEK-RGVSPNSVTLVLMLSACS 219


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  278 bits (710), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 152/499 (30%), Positives = 262/499 (52%), Gaps = 40/499 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  + +S    +V + +AL+  Y K     DA ++F  +P+ +VVSWNSLI+ Y Q+
Sbjct: 171 EQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQN 230

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS-LERGVVI 141
           G   +AL LFVE+  +    D  + +S ++AC  L + + G  +H+ +VK   L   +V+
Sbjct: 231 GPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVL 290

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
            N L+DMY KCG   +A  +F  M  + I+S  S++                        
Sbjct: 291 NNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSIL------------------------ 326

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                   G A+  ++EDA ++ S M   N  +WN ++  Y       EA+ LF +++  
Sbjct: 327 -------TGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRD 379

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL------DASIVVASALLDMYSKC 315
            +    YT+  +L+    ++ L  G   H  V+K+G       ++ + V ++L+DMY K 
Sbjct: 380 SIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKT 439

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G ++    +F  +  ++ V+WNAMI GYA+NG     + LFE++    +  PDSVT + V
Sbjct: 440 GSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNE-NPDSVTMIGV 498

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L+AC H+ +  D+   YF SMT+D+GI P+ +H   M+ L+G+ G +  A+ +I ++   
Sbjct: 499 LSACGHSGL-VDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPME 557

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
              V+W +LL A     ++++   +A  + +L+  +   YV+L N+Y   G W     +R
Sbjct: 558 PDSVLWASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVR 617

Query: 496 NFMRERGLRKEAGCSWIEV 514
             M++RG+ K+ GCSWIE+
Sbjct: 618 RSMKDRGVSKQPGCSWIEI 636



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 160/358 (44%), Gaps = 65/358 (18%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFV-------------------- 40
           P+E  L  ++ A + L  D   +Q+H +++K   L +  V                    
Sbjct: 250 PDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARC 309

Query: 41  ------------STALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKA 88
                        T+++  Y K  ++ DA  +F ++ + +V++WN LI+ Y Q+G+  +A
Sbjct: 310 IFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEA 369

Query: 89  LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK------YSLERGVVIA 142
           + LFV+L+R  I+   Y++ + L ACG +  LQLG   H  ++K      +  E  V + 
Sbjct: 370 IRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVG 429

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PN 198
           N L+DMY K GS++D   VF  M  +D +SWN++I   A+NG  + A     R+     N
Sbjct: 430 NSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNEN 489

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALH 253
           PD+++   V++     G +++      SM      +P+   +  ++        + EA  
Sbjct: 490 PDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEE 549

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           L       D+PM+               ++ W  L+ +C + + ++     A  L ++
Sbjct: 550 LI-----NDMPMEP-------------DSVLWASLLGACRLHKNVELGEWTAGRLFEL 589



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 123/258 (47%), Gaps = 34/258 (13%)

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
           A H++I+K  +     + N L+  Y + G + DA  VF E                    
Sbjct: 38  AAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDE-------------------- 77

Query: 185 NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
                      +P  +T SYN +++  A+ G  ++A  +  ++P P+  S+N+++     
Sbjct: 78  -----------IPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALAR 126

Query: 245 RNR--VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
             R    +AL     M + D  ++ Y+F++ LS  A       G  +H  V +      +
Sbjct: 127 HGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDV 186

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
            + SAL+DMY+KC + E A  +F ++  +N+V+WN++IT Y +NG + + + LF ++   
Sbjct: 187 HIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAA 246

Query: 363 RDLQPDSVTFLNVLAACS 380
               PD VT  +V++AC+
Sbjct: 247 -GFSPDEVTLSSVMSACA 263



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 114/238 (47%), Gaps = 11/238 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL------SNVFVSTALMGFYRKINSL 54
           P  Y   ++L A  ++      QQ H ++LK GF       S+VFV  +L+  Y K  S+
Sbjct: 383 PTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSI 442

Query: 55  ADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC 114
            D  K+F  +     VSWN++I GY Q+G+ + AL+LF  +  S    D+ +    L+AC
Sbjct: 443 DDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSAC 502

Query: 115 GQLGSLQLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIIS 172
           G  G +  G    HS    + +        C++D+ G+ G +++A  +  +M ++ D + 
Sbjct: 503 GHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVL 562

Query: 173 WNSVIAASARNGNLELA---FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           W S++ A   + N+EL     G L  L   ++  Y  + N  A+ G   +   +  SM
Sbjct: 563 WASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSM 620


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  278 bits (710), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 175/568 (30%), Positives = 281/568 (49%), Gaps = 84/568 (14%)

Query: 1   PNEYVLFHLLRASSDLG-WDTYCQQLHCYILKSGFLSNVFVSTALMGFY---------RK 50
           P+ +    +L A S +   + +CQ LHC ++K G L    V+ AL+  Y         + 
Sbjct: 137 PDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKS 196

Query: 51  INSLADAHKMFVEIPQ---------------------------------PSVVSWNSLIS 77
              +A A K+F E P+                                 P  V+WN++IS
Sbjct: 197 SQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMIS 256

Query: 78  GYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACG----QLGSLQLGMAIHSKIVKY 133
           GYV+ G Y +A + F  +    I  D Y++TS ++ACG    ++G    G  +H  I++ 
Sbjct: 257 GYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRT 316

Query: 134 SLERG----VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
            +E      + + N LI  Y K   + +A  VF +M  +DIISW                
Sbjct: 317 VVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISW---------------- 360

Query: 190 FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
                          N V++G      IE+A  I S MP  N  +W  +++G        
Sbjct: 361 ---------------NAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGE 405

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
           E L LF +M+S+ +   +Y F+  ++  + L +L  G  IHS VI+ G D+ +   +AL+
Sbjct: 406 EGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALI 465

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
            MYS+CG VE A+S+F ++   + V+WNAMI   A++G   K IELFEQ+    D+ PD 
Sbjct: 466 TMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMK-EDILPDR 524

Query: 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429
           +TFL +L AC+H  +   +   YF++M   YGI P  +H   +I L+ + G   +AQ +I
Sbjct: 525 ITFLTILTACNHAGL-IKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVI 583

Query: 430 RELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD 489
           + + F +   +W ALL+      ++++   +A  +++L    D  Y++L N+Y + G WD
Sbjct: 584 KSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWD 643

Query: 490 VASVMRNFMRERGLRKEAGCSWIEVENV 517
             + +R  MRERG++KE GCSW+EVEN+
Sbjct: 644 EVARVRLLMRERGVKKEPGCSWVEVENM 671



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 179/442 (40%), Gaps = 116/442 (26%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H +IL SGF  N F+   L+  Y K +++  A K+F +IP+P +V+  +L+S Y  S
Sbjct: 25  RAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSS 84

Query: 83  GKYR---------------------------------KALNLFVELERSEIYADAYSFTS 109
           G  +                                  ALNLFV+++R     D ++F+S
Sbjct: 85  GNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSS 144

Query: 110 ALAACGQLGSLQLG-MAIHSKIVKYSLERGVVIANCLIDMYGKCGS---------VEDAI 159
            L+A   +   +     +H +++K        + N L+  Y  C S         +  A 
Sbjct: 145 VLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASAR 204

Query: 160 GVFGEMIDKDII--SWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDI 217
            VF E     I   SW ++IA   RN +L  A   L  L  P  +++N +I         
Sbjct: 205 KVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMI--------- 255

Query: 218 EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277
                                 +GYV R    EA   F  M S  +  DEYT+++++S  
Sbjct: 256 ----------------------SGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISAC 293

Query: 278 AG----LSALTWGMLIHSCVIKQGLDAS----IVVASALLDMYSK--------------- 314
                 +     G  +H  +++  ++ S    + V +AL+  Y+K               
Sbjct: 294 GSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMP 353

Query: 315 ----------------CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
                             ++E A+S+F  +  +N++TW  MI+G A+NG   + ++LF Q
Sbjct: 354 VRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQ 413

Query: 359 LKTVRDLQPDSVTFLNVLAACS 380
           +K+   L+P    F   + ACS
Sbjct: 414 MKS-EGLEPCDYAFAGAITACS 434



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 109/252 (43%), Gaps = 45/252 (17%)

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           +  A+H+ I+    +    I N LI++Y K  ++  A  +F ++   DI++  ++++A +
Sbjct: 23  IARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYS 82

Query: 182 RNGNLELAFGFLHRLPNP--DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
            +GN++LA    +  P    DT+SYN +I                               
Sbjct: 83  SSGNVKLAQQLFNATPLTIRDTVSYNAMI------------------------------- 111

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS-ALTWGMLIHSCVIKQGL 298
           T Y + N    AL+LF +M+      D +TFS++LS ++ ++       ++H  VIK G 
Sbjct: 112 TAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGT 171

Query: 299 DASIVVASALLDMYSKCGQVEIADS---------MFRSLCRKNLV--TWNAMITGYARNG 347
                V +ALL  Y  C    +  S         +F    +  +   +W  MI GY RN 
Sbjct: 172 LLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRND 231

Query: 348 DLTKVIELFEQL 359
           DL    EL + L
Sbjct: 232 DLVAARELLDGL 243



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 36/152 (23%)

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK------- 314
           DV    Y + T L+ ++    +     +H+ ++  G   +  + + L+++Y K       
Sbjct: 2   DVRDLAYRYLTQLNHVSTTQIIARA--VHAHILTSGFKPNTFILNRLINIYCKSSNITYA 59

Query: 315 ------------------------CGQVEIADSMFRS--LCRKNLVTWNAMITGYARNGD 348
                                    G V++A  +F +  L  ++ V++NAMIT Y+   D
Sbjct: 60  RKLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGND 119

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
               + LF Q+K    L PD  TF +VL+A S
Sbjct: 120 GHAALNLFVQMKRYGFL-PDPFTFSSVLSALS 150


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  278 bits (710), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 169/556 (30%), Positives = 282/556 (50%), Gaps = 42/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  L+   +     ++   +H   L+S   S+V V  AL+  Y     L+DA  +
Sbjct: 244 PDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFL 303

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  ++SWN++IS YVQ+     AL    +L  +    +  +F+SAL AC   G+L
Sbjct: 304 FWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGAL 363

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H+ +++ SL+R +++ N LI MYGKC S+EDA  VF  M   DI+S+N +I   
Sbjct: 364 IDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGY 423

Query: 181 A--RNG-----------------------NLELAFGF---LHRLPNP------------D 200
           A   +G                       N+  +F     LH    P            D
Sbjct: 424 AVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSD 483

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +I   A+ G++E +  I +S+ + N  SWN+I+   V      EAL LF +MQ 
Sbjct: 484 EYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQH 543

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
               +D    +  LS  A L++L  GM +H   +K GLD+   V +A +DMY KCG+++ 
Sbjct: 544 AGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDE 603

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
              +      +    WN +I+GYA+ G   +  E F+Q+      +PD VTF+ +L+ACS
Sbjct: 604 MLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQM-VATGRKPDYVTFVALLSACS 662

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H  +  DK  +Y+ SM   +G+ P ++HC  ++ L+G+ G    A++ I E+      ++
Sbjct: 663 HAGL-VDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLI 721

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           WR+LLS+S    +L++ R +A ++++L+   D  YV+L NLY ++  W     +R+ M+ 
Sbjct: 722 WRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKT 781

Query: 501 RGLRKEAGCSWIEVEN 516
             + K   CSW++++N
Sbjct: 782 ININKRPACSWLKLKN 797



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 195/390 (50%), Gaps = 40/390 (10%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H    ++G + NV++ TAL+  Y     ++DA ++F E+P+ +VVSW +L+     +G 
Sbjct: 66  IHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGY 125

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
             +AL  + ++ R  +  +A +F + ++ CG L +   G+ + S+++   L+  V +AN 
Sbjct: 126 LEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANS 185

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF----GFLHRLPNPD 200
           LI M+G  G V DA  +F  M + D ISWN++I+  +  G     F       H    PD
Sbjct: 186 LITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPD 245

Query: 201 TISY-----------------------------------NEVINGIAQFGDIEDAIMILS 225
             +                                    N ++N  +  G + DA  +  
Sbjct: 246 ATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFW 305

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           +M   +  SWN++++ YV      +AL   G++   +   +  TFS+ L   +   AL  
Sbjct: 306 NMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALID 365

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G ++H+ V++  L  +++V ++L+ MY KC  +E A+ +F+S+   ++V++N +I GYA 
Sbjct: 366 GKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAV 425

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
             D TK +++F  +++   ++P+ +T +N+
Sbjct: 426 LEDGTKAMQVFSWMRSA-GIKPNYITMINI 454



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 187/397 (47%), Gaps = 41/397 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+   ++ SG  + V V+ +L+  +  +  + DA K+F  + +   +SWN++IS Y   G
Sbjct: 166 QVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQG 225

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
              K   +F ++    +  DA +  S ++ C        G  IHS  ++ SL+  V + N
Sbjct: 226 ICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVIN 285

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------P 197
            L++MY   G + DA  +F  M  +D+ISWN++I++  +N N   A   L +L      P
Sbjct: 286 ALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESP 345

Query: 198 NPDTISY---------------------------------NEVINGIAQFGDIEDAIMIL 224
           N  T S                                  N +I    +   +EDA  + 
Sbjct: 346 NHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVF 405

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL- 283
            SMP+ +  S+N ++ GY       +A+ +F  M+S  +  +  T   +    A  + L 
Sbjct: 406 QSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLH 465

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
            +G  +H+ +I+ G  +   VA++L+ MY+KCG +E + ++F S+  KN+V+WNA+I   
Sbjct: 466 NYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAAN 525

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            + G   + ++LF  ++   + + D V     L++C+
Sbjct: 526 VQLGHGEEALKLFIDMQHAGN-KLDRVCLAECLSSCA 561



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 162/352 (46%), Gaps = 43/352 (12%)

Query: 71  SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG---SLQLGMAIH 127
           +W + +SG V+ G+   A  +   +    +    ++  S + AC + G    +  G AIH
Sbjct: 8   TWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAIH 67

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
           +   +  L   V I   L+ +YG  G V DA  +F EM +++++SW +++ A + NG LE
Sbjct: 68  ALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLE 127

Query: 188 LAF--------------------------GFLHRLPNPDTISY-------------NEVI 208
            A                              + +P     S              N +I
Sbjct: 128 EALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLI 187

Query: 209 NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268
                 G + DA  +   M   ++ SWN++++ Y ++    +   +F +M+   +  D  
Sbjct: 188 TMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDAT 247

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           T  +++S  A     + G  IHS  ++  LD+S+ V +AL++MYS  G++  A+ +F ++
Sbjct: 248 TLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNM 307

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            R++L++WN MI+ Y +N + T  ++   QL    +  P+ +TF + L ACS
Sbjct: 308 SRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNE-SPNHLTFSSALGACS 358



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 108/235 (45%), Gaps = 16/235 (6%)

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL---SAL 283
           M     S+W + ++G V   R   A  +   M+ + VP+  +  +++++          +
Sbjct: 1   MADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGI 60

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH+   + GL  ++ + +ALL +Y   G V  A  +F  +  +N+V+W A++   
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVAL 120

Query: 344 ARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACS--HTDIPFDKVSEYFESMTKDY 400
           + NG L + +  + Q++  RD  P ++  F  V++ C     ++P  +V+    S     
Sbjct: 121 SSNGYLEEALRAYRQMR--RDGVPCNANAFATVVSLCGSLENEVPGLQVA----SQVIVS 174

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA---SGACS 452
           G++  V    S+I + G  G V  A+++   +      + W A++S     G CS
Sbjct: 175 GLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDT-ISWNAMISMYSHQGICS 228


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  278 bits (710), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 169/556 (30%), Positives = 282/556 (50%), Gaps = 42/556 (7%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
            P+   L  L+   +     ++   +H   L+S   S+V V  AL+  Y     L+DA  +
Sbjct: 546  PDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFL 605

Query: 61   FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            F  + +  ++SWN++IS YVQ+     AL    +L  +    +  +F+SAL AC   G+L
Sbjct: 606  FWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGAL 665

Query: 121  QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
              G  +H+ +++ SL+R +++ N LI MYGKC S+EDA  VF  M   DI+S+N +I   
Sbjct: 666  IDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGY 725

Query: 181  A--RNG-----------------------NLELAFGF---LHRLPNP------------D 200
            A   +G                       N+  +F     LH    P            D
Sbjct: 726  AVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSD 785

Query: 201  TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                N +I   A+ G++E +  I +S+ + N  SWN+I+   V      EAL LF +MQ 
Sbjct: 786  EYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQH 845

Query: 261  KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
                +D    +  LS  A L++L  GM +H   +K GLD+   V +A +DMY KCG+++ 
Sbjct: 846  AGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDE 905

Query: 321  ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
               +      +    WN +I+GYA+ G   +  E F+Q+      +PD VTF+ +L+ACS
Sbjct: 906  MLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQM-VATGRKPDYVTFVALLSACS 964

Query: 381  HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
            H  +  DK  +Y+ SM   +G+ P ++HC  ++ L+G+ G    A++ I E+      ++
Sbjct: 965  HAGL-VDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLI 1023

Query: 441  WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
            WR+LLS+S    +L++ R +A ++++L+   D  YV+L NLY ++  W     +R+ M+ 
Sbjct: 1024 WRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKT 1083

Query: 501  RGLRKEAGCSWIEVEN 516
              + K   CSW++++N
Sbjct: 1084 ININKRPACSWLKLKN 1099



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 195/390 (50%), Gaps = 40/390 (10%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H    ++G + NV++ TAL+  Y     ++DA ++F E+P+ +VVSW +L+     +G 
Sbjct: 368 IHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGY 427

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
             +AL  + ++ R  +  +A +F + ++ CG L +   G+ + S+++   L+  V +AN 
Sbjct: 428 LEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANS 487

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF----GFLHRLPNPD 200
           LI M+G  G V DA  +F  M + D ISWN++I+  +  G     F       H    PD
Sbjct: 488 LITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPD 547

Query: 201 TISY-----------------------------------NEVINGIAQFGDIEDAIMILS 225
             +                                    N ++N  +  G + DA  +  
Sbjct: 548 ATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFW 607

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           +M   +  SWN++++ YV      +AL   G++   +   +  TFS+ L   +   AL  
Sbjct: 608 NMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALID 667

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G ++H+ V++  L  +++V ++L+ MY KC  +E A+ +F+S+   ++V++N +I GYA 
Sbjct: 668 GKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAV 727

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
             D TK +++F  +++   ++P+ +T +N+
Sbjct: 728 LEDGTKAMQVFSWMRSA-GIKPNYITMINI 756



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 187/397 (47%), Gaps = 41/397 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+   ++ SG  + V V+ +L+  +  +  + DA K+F  + +   +SWN++IS Y   G
Sbjct: 468 QVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQG 527

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
              K   +F ++    +  DA +  S ++ C        G  IHS  ++ SL+  V + N
Sbjct: 528 ICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVIN 587

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------P 197
            L++MY   G + DA  +F  M  +D+ISWN++I++  +N N   A   L +L      P
Sbjct: 588 ALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESP 647

Query: 198 NPDTISY---------------------------------NEVINGIAQFGDIEDAIMIL 224
           N  T S                                  N +I    +   +EDA  + 
Sbjct: 648 NHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVF 707

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL- 283
            SMP+ +  S+N ++ GY       +A+ +F  M+S  +  +  T   +    A  + L 
Sbjct: 708 QSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLH 767

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
            +G  +H+ +I+ G  +   VA++L+ MY+KCG +E + ++F S+  KN+V+WNA+I   
Sbjct: 768 NYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAAN 827

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            + G   + ++LF  ++   + + D V     L++C+
Sbjct: 828 VQLGHGEEALKLFIDMQHAGN-KLDRVCLAECLSSCA 863



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 183/401 (45%), Gaps = 46/401 (11%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFY---RKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           +H   ++     + F    L+ FY   R  ++ A A  +F E+   +  +W + +SG V+
Sbjct: 261 IHGLAVRLALPLSAFHRNTLLAFYFRQRDASAAAAALHLFDEMADRTPSTWYTAVSGCVR 320

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG---SLQLGMAIHSKIVKYSLERG 138
            G + KA  +   +    +    ++  S + AC + G    +  G AIH+   +  L   
Sbjct: 321 CGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGLMGN 380

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF-------- 190
           V I   L+ +YG  G V DA  +F EM +++++SW +++ A + NG LE A         
Sbjct: 381 VYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRR 440

Query: 191 ------------------GFLHRLPNPDTISY-------------NEVINGIAQFGDIED 219
                                + +P     S              N +I      G + D
Sbjct: 441 DGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHD 500

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
           A  +   M   ++ SWN++++ Y ++    +   +F +M+   +  D  T  +++S  A 
Sbjct: 501 AEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCAS 560

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
               + G  IHS  ++  LD+S+ V +AL++MYS  G++  A+ +F ++ R++L++WN M
Sbjct: 561 SDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTM 620

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           I+ Y +N + T  ++   QL    +  P+ +TF + L ACS
Sbjct: 621 ISSYVQNCNSTDALKTLGQLFHTNE-SPNHLTFSSALGACS 660


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  278 bits (710), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 170/563 (30%), Positives = 296/563 (52%), Gaps = 56/563 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSG-FLSNVFVSTALMG-FYRKINSLADAH 58
           PN+Y    ++RA S+  +    + +  +++K+G F S+V V  +L+  F +  NS  +A+
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAY 223

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           K+F ++ + +VV+W  +I+  +Q G  R+A+  F+++  S   +D ++ +S  +AC +L 
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELE 283

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC---GSVEDAIGVFGEMIDKDIISWNS 175
           +L LG  +HS  ++  L   V  +  L+DMY KC   GSV+D   VF  M D  ++SW +
Sbjct: 284 NLSLGRQLHSWAIRSGLADDVECS--LVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTA 341

Query: 176 VIAASARNGNLEL-AFGFLHRL-----PNPDTISYNEVINGIAQFGD------------- 216
           +I    +N NL   A      +       P+  +++          D             
Sbjct: 342 LITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFK 401

Query: 217 ----------------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
                                 +EDA     S+   N  S+N+ L G         A  L
Sbjct: 402 RGLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFEL 461

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
             E+  +++ +  +TF+++LSG+A + +L  G  IHS V+K GL  +  V +AL+ MYSK
Sbjct: 462 LSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYSK 521

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG ++ A  +F  +  +N+++W +MITG+A++G   +V+E F Q+ T   ++P+ VT++ 
Sbjct: 522 CGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQM-TKEGVKPNEVTYVA 580

Query: 375 VLAACSHTDIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431
           +L+ACSH  +    VSE   +F SM +D+ IKP +EH   M+ L+ + G +  A   I  
Sbjct: 581 ILSACSHVGL----VSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINT 636

Query: 432 LGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA 491
           + F +  +VWR  L A    S+ ++ +++A ++++ + +    Y+ L N+Y S G W+ +
Sbjct: 637 MPFQADVLVWRTFLGACRVHSNTELGKLAARKILEFDPNEPAAYIQLSNIYASAGKWEES 696

Query: 492 SVMRNFMRERGLRKEAGCSWIEV 514
           + MR  M+ER L KE GCSWIEV
Sbjct: 697 TEMRRKMKERNLVKEGGCSWIEV 719



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 165/362 (45%), Gaps = 51/362 (14%)

Query: 73  NSLISGYVQSGKYRKALNLFVELERSEIYA-DAYSFTSALAACGQLGSLQLGMAIHSKIV 131
           + LI  ++ +G  R A++    + R  I   D+ +F+S L +C +    +LG  +H++++
Sbjct: 30  DRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLI 89

Query: 132 KYSLERGVVIANCLIDMYGKCGSVEDAIGVF---GEMIDKDIISWNSVIAASARNGN--- 185
           ++ +E   V+ N LI +Y K G +  A  VF   G    +D++SW++++A    NG    
Sbjct: 90  EFEIEPDSVLYNSLISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFD 149

Query: 186 -LELAFGFLHRLPNPDTISYNEVIN--------GIAQF---------------------- 214
            ++L   FL     P+   Y  VI         G+ +                       
Sbjct: 150 AIKLFVEFLEMGLVPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLI 209

Query: 215 -------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
                     E+A  +   M   N  +W  ++T  +      EA+  F +M       D+
Sbjct: 210 DMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDK 269

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC---GQVEIADSM 324
           +T S++ S  A L  L+ G  +HS  I+ GL     V  +L+DMY+KC   G V+    +
Sbjct: 270 FTLSSVFSACAELENLSLGRQLHSWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRKV 327

Query: 325 FRSLCRKNLVTWNAMITGYARNGDL-TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           F  +   ++++W A+ITGY +N +L T+ I LF ++ T   ++P+  TF +   AC +  
Sbjct: 328 FDRMQDHSVMSWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVS 387

Query: 384 IP 385
            P
Sbjct: 388 DP 389



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 198/462 (42%), Gaps = 63/462 (13%)

Query: 43  ALMGFYRKINSLADAHKMFVEIP---QPSVVSWNSLISGYVQSGKYRKALNLFVELERSE 99
           +L+  Y K   L  A  +F  +    +  VVSW+++++ +  +G+   A+ LFVE     
Sbjct: 102 SLISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMG 161

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS-LERGVVIANCLIDMYGKC-GSVED 157
           +  + Y +T+ + AC     + +G  I   ++K    E  V +   LIDM+ K   S E+
Sbjct: 162 LVPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFEN 221

Query: 158 AIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQ 213
           A  VF +M + ++++W  +I    + G    A  F   +       D  + + V +  A+
Sbjct: 222 AYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAE 281

Query: 214 F------------------------------------GDIEDAIMILSSMPSPNSSSWNS 237
                                                G ++D   +   M   +  SW +
Sbjct: 282 LENLSLGRQLHSWAIRSGLADDVECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTA 341

Query: 238 ILTGYV-NRNRVPEALHLFGEMQSK-DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
           ++TGY+ N N   EA++LF EM ++  V  + +TFS+       +S    G  +     K
Sbjct: 342 LITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFK 401

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
           +GL ++  V+++++ M+ KC ++E A + F SL  KNLV++N  + G  RN D     EL
Sbjct: 402 RGLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFEL 461

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415
             ++   R+L   + TF ++L+  +  ++   +  E   S     G+      C ++I +
Sbjct: 462 LSEIAE-RELGVSAFTFASLLSGVA--NVGSLRKGEQIHSQVLKLGLSCNQPVCNALISM 518

Query: 416 MGQKGEVWRAQRMIREL-------------GFGSYGVVWRAL 444
             + G +  A R+   +             GF  +G   R L
Sbjct: 519 YSKCGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVL 560



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 120/264 (45%), Gaps = 15/264 (5%)

Query: 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-----DIISWNSVIAASARNGNLEL 188
           S+   + +A+ LI  +   G +  A+     M        D ++++S++ +  R  +  L
Sbjct: 21  SISNRINVADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARHFRL 80

Query: 189 AFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSM---PSPNSSSWNSILTG 241
                 RL      PD++ YN +I+  ++ GD+  A  +  +M      +  SW++++  
Sbjct: 81  GKLVHARLIEFEIEPDSVLYNSLISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMAC 140

Query: 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDA 300
           + N  R  +A+ LF E     +  ++Y ++ ++   +    +  G +I   ++K G  ++
Sbjct: 141 FGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFES 200

Query: 301 SIVVASALLDMYSKC-GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            + V  +L+DM+ K     E A  +F  +   N+VTW  MIT   + G   + I  F  +
Sbjct: 201 DVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDM 260

Query: 360 KTVRDLQPDSVTFLNVLAACSHTD 383
             +   + D  T  +V +AC+  +
Sbjct: 261 -VLSGFESDKFTLSSVFSACAELE 283


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 159/514 (30%), Positives = 265/514 (51%), Gaps = 33/514 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    L +  +         ++  ++++ GF S++FV  A++        L  A K+
Sbjct: 153 PDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKL 212

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E     +VSWNS+I+GYV+ G   +A +L+ ++    +  D  +    ++A  QL +L
Sbjct: 213 FDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENL 272

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  +H  I +  L   V +AN L+DMY KC ++E A  +F  M  K ++SW +++   
Sbjct: 273 ALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVI-- 330

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                                        G A+FG +E A+ + + MP  +   WN+++ 
Sbjct: 331 -----------------------------GYAKFGLLESAVRLFNEMPEKDVVLWNALIG 361

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           G+V   R  EAL LF EMQ+  V  D+ T    LS  + L AL  G+ +H  V K  L  
Sbjct: 362 GFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTM 421

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           ++ + +AL+DMY+KCG ++ A  +F  +  +N +TW A+I G A +G     I  F ++ 
Sbjct: 422 NVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMI 481

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
           ++  L PD +TF+ VL+AC H  +  D+  +YF  MT  YGI P ++H   ++ L+G+ G
Sbjct: 482 SI-GLVPDEITFIGVLSACCHGGL-VDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAG 539

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
            +  A+ +IR + F    VVW AL   S    ++ +   +A+++++L+     +YV+L N
Sbjct: 540 FLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLAN 599

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           +Y     W+ A  +R  M ERG+ K  GCS IE+
Sbjct: 600 MYGDANMWEQARKVRKMMEERGVEKTPGCSSIEM 633



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 97/179 (54%), Gaps = 10/179 (5%)

Query: 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD--VPMDE 267
            I+++ +++    IL++  + N  SWN  + GYV       A+ L+  M  K   +P D 
Sbjct: 97  AISEWRNLDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIP-DN 155

Query: 268 YTFSTMLSGIAGLSALTWG---MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
           YT+  +    AG S L+W    +L H  VI+ G D+ + V +A++ +   CG++  A  +
Sbjct: 156 YTYPLLFKVCAGFS-LSWTANEILGH--VIQLGFDSDLFVHNAIIHVLVSCGELLAARKL 212

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           F   C ++LV+WN++I GY R G   +  +L+ ++  + ++ PD VT + V++A +  +
Sbjct: 213 FDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGEL-NVMPDEVTMIGVVSASAQLE 270


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 159/514 (30%), Positives = 265/514 (51%), Gaps = 33/514 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    L +  +         ++  ++++ GF S++FV  A++        L  A K+
Sbjct: 153 PDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKL 212

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E     +VSWNS+I+GYV+ G   +A +L+ ++    +  D  +    ++A  QL +L
Sbjct: 213 FDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENL 272

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  +H  I +  L   V +AN L+DMY KC ++E A  +F  M  K ++SW +++   
Sbjct: 273 ALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVI-- 330

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                                        G A+FG +E A+ + + MP  +   WN+++ 
Sbjct: 331 -----------------------------GYAKFGLLESAVRLFNEMPEKDVVLWNALIG 361

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           G+V   R  EAL LF EMQ+  V  D+ T    LS  + L AL  G+ +H  V K  L  
Sbjct: 362 GFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTM 421

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           ++ + +AL+DMY+KCG ++ A  +F  +  +N +TW A+I G A +G     I  F ++ 
Sbjct: 422 NVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMI 481

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
           ++  L PD +TF+ VL+AC H  +  D+  +YF  MT  YGI P ++H   ++ L+G+ G
Sbjct: 482 SI-GLVPDEITFIGVLSACCHGGL-VDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAG 539

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
            +  A+ +IR + F    VVW AL   S    ++ +   +A+++++L+     +YV+L N
Sbjct: 540 FLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLAN 599

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           +Y     W+ A  +R  M ERG+ K  GCS IE+
Sbjct: 600 MYGDANMWEQARKVRKMMEERGVEKTPGCSSIEM 633



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 97/179 (54%), Gaps = 10/179 (5%)

Query: 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD--VPMDE 267
            I+++ +++    IL++  + N  SWN  + GYV       A+ L+  M  K   +P D 
Sbjct: 97  AISEWRNLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIP-DN 155

Query: 268 YTFSTMLSGIAGLSALTWG---MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
           YT+  +    AG S L+W    +L H  VI+ G D+ + V +A++ +   CG++  A  +
Sbjct: 156 YTYPLLFKVCAGFS-LSWTANEILGH--VIQLGFDSDLFVHNAIIHVLVSCGELLAARKL 212

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           F   C ++LV+WN++I GY R G   +  +L+ ++  + ++ PD VT + V++A +  +
Sbjct: 213 FDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGEL-NVMPDEVTMIGVVSASAQLE 270


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 157/485 (32%), Positives = 266/485 (54%), Gaps = 13/485 (2%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL 95
            NV   TA++  Y K N + +A ++F E+P  +VVSWN+++ GY ++G  ++AL+LF  +
Sbjct: 62  KNVVTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRM 121

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
               + +   +  +AL  CG++   Q       ++     +R VV    ++    K G V
Sbjct: 122 PERNVVS-WNTIITALVQCGRIEDAQ-------RLFDQMKDRDVVSWTTMVAGLAKNGRV 173

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFG 215
           EDA  +F +M  ++++SWN++I   A+N  L+ A     R+P  D  S+N +I G  Q G
Sbjct: 174 EDARALFDQMPVRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNG 233

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTML 274
           ++  A  +   M   N  +W +++TGYV      EAL +F +M  + ++  +  TF T+L
Sbjct: 234 ELNRAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVL 293

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS--LCRKN 332
              + L+ LT G  IH  + K     S  V SAL++MYSKCG++  A  MF    L +++
Sbjct: 294 GACSDLAGLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRD 353

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           L++WN MI  YA +G   + I LF +++ +  +  + VTF+ +L ACSHT +  ++  +Y
Sbjct: 354 LISWNGMIAAYAHHGYGKEAINLFNEMQEL-GVCANDVTFVGLLTACSHTGL-VEEGFKY 411

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
           F+ + K+  I+   +H   ++ L G+ G +  A  +I  LG      VW ALL+      
Sbjct: 412 FDEILKNRSIQLREDHYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHG 471

Query: 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           + D+ ++ A +++K+E  +   Y +L N+Y S G W  A+ +R  M++ GL+K+ GCSWI
Sbjct: 472 NADIGKLVAEKILKIEPQNAGTYSLLSNMYASVGKWKEAANVRMRMKDMGLKKQPGCSWI 531

Query: 513 EVENV 517
           EV N 
Sbjct: 532 EVGNT 536



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 161/365 (44%), Gaps = 66/365 (18%)

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR------- 195
           N  I    + G ++ A  VF EM ++DI  W ++I    + G +  A     R       
Sbjct: 5   NLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNV 64

Query: 196 -------------------------LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSP 230
                                    +P  + +S+N +++G A+ G  + A+ +   MP  
Sbjct: 65  VTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPER 124

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG----------- 279
           N  SWN+I+T  V   R+ +A  LF +M+ +DV     +++TM++G+A            
Sbjct: 125 NVVSWNTIITALVQCGRIEDAQRLFDQMKDRDV----VSWTTMVAGLAKNGRVEDARALF 180

Query: 280 -----LSALTWGMLIHSCVIKQGLDASIVVASAL--LDMYS---------KCGQVEIADS 323
                 + ++W  +I      + LD ++ +   +   DM S         + G++  A+ 
Sbjct: 181 DQMPVRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEK 240

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F  +  KN++TW AM+TGY ++G   + + +F ++    +L+P++ TF+ VL ACS  D
Sbjct: 241 LFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACS--D 298

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV-WR 442
           +      +    M      + +     ++I +  + GE+  A++M  +       ++ W 
Sbjct: 299 LAGLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWN 358

Query: 443 ALLSA 447
            +++A
Sbjct: 359 GMIAA 363



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 8/195 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      +L A SDL   T  QQ+H  I K+ F  +  V +AL+  Y K   L  A KM
Sbjct: 284 PNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKM 343

Query: 61  FVE--IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           F +  + Q  ++SWN +I+ Y   G  ++A+NLF E++   + A+  +F   L AC   G
Sbjct: 344 FDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTG 403

Query: 119 SLQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGV---FGEMIDKDIISWN 174
            ++ G     +I+K  S++       CL+D+ G+ G +++A  +    GE +   +  W 
Sbjct: 404 LVEEGFKYFDEILKNRSIQLREDHYACLVDLCGRAGRLKEASNIIEGLGEEV--PLTVWG 461

Query: 175 SVIAASARNGNLELA 189
           +++A    +GN ++ 
Sbjct: 462 ALLAGCNVHGNADIG 476


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 166/555 (29%), Positives = 283/555 (50%), Gaps = 41/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +    +  A+S+L    + QQ H   +K     +VFV ++L+  Y K   L +A ++
Sbjct: 109 PNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREV 168

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+ + V+W ++ISGY       +A  +F  + R E   + ++FTS L+A      +
Sbjct: 169 FDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFV 228

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH   VK  L   + I N L+ MY KCGS++D++ VF    DK+ I+W+++I   
Sbjct: 229 DSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGY 288

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGI------------------------- 211
           A++G+   A     R+     NP   +   V+N                           
Sbjct: 289 AQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQL 348

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     A+ G  EDA    + +  P+   W S++ GYV      +AL L+  MQ +
Sbjct: 349 YIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQME 408

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  +E T +++L   + L+A   G  IH+  IK GL   + + SAL  MY+KCG +E  
Sbjct: 409 GILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEG 468

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           + +FR +  +++++WNAMI+G ++NG   + +ELFE+++  +D +PD VTF+NVL+ACSH
Sbjct: 469 NIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQ-QDTKPDDVTFVNVLSACSH 527

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  D    YF  M  ++G+ P VEH   M+ ++ + G+++ A+  I          +W
Sbjct: 528 MGL-VDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKLYEAKEFIESTTIDHGLCLW 586

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LL A     + ++   +  ++++L       YV+L  +YT+ G  +    +R+ M+ R
Sbjct: 587 RILLGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSGIYTALGRPEDVERVRSMMKVR 646

Query: 502 GLRKEAGCSWIEVEN 516
           G+ KE GCSWIE+++
Sbjct: 647 GVSKEPGCSWIELKS 661



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 198/420 (47%), Gaps = 45/420 (10%)

Query: 25  LHCYILKSGFLSN-VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           LH  I+K    S+ ++++ +L+ FY K   L  A  +F  I    V+SWN LI+GY Q G
Sbjct: 29  LHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYSQQG 88

Query: 84  KYRKA--LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
               +  + LF  +    I  +A++F+    A   L S+  G   H+  +K +    V +
Sbjct: 89  PTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFV 148

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA------------------RN 183
            + L++MY K G + +A  VF  M +++ ++W ++I+  A                    
Sbjct: 149 GSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEE 208

Query: 184 GNLELAF-GFLHRLPNPDTIS--------------------YNEVINGIAQFGDIEDAIM 222
              E AF   L  L  P+ +                      N ++   A+ G ++D++ 
Sbjct: 209 DVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQ 268

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           +       NS +W++++TGY       +AL LF  M    +   E+T   +L+  +   A
Sbjct: 269 VFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACA 328

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           +  G  +H+ ++K G ++ + + +AL+DMY+K G  E A   F  L + +LV W +MI G
Sbjct: 329 VEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAG 388

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           Y +NG+    + L+ +++ +  + P+ +T  +VL ACS+    FD+  +   + T  YG+
Sbjct: 389 YVQNGENEDALSLYCRMQ-MEGILPNELTMASVLKACSNL-AAFDQGRQ-IHARTIKYGL 445



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 150/304 (49%), Gaps = 43/304 (14%)

Query: 119 SLQLGMAIHSKIVKY-SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
           SLQ G A+H++I+K  S    + +AN LI+ Y KC  +  A  VF  + +KD+ISWN +I
Sbjct: 22  SLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLI 81

Query: 178 AASARNGNLELAF--GFLHR------LPNPDTIS-------------------------- 203
              ++ G    +F      R      LPN  T S                          
Sbjct: 82  NGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMA 141

Query: 204 --YN-----EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
             Y+      ++N   + G + +A  +   MP  N  +W ++++GY  +    EA  +F 
Sbjct: 142 CFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFE 201

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
            M+ ++  ++E+ F+++LS +A    +  G  IH   +K GL   + + +AL+ MY+KCG
Sbjct: 202 LMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCG 261

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            ++ +  +F     KN +TW+AMITGYA++GD  K ++LF ++     + P   T + VL
Sbjct: 262 SLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMH-FAGINPSEFTLVGVL 320

Query: 377 AACS 380
            ACS
Sbjct: 321 NACS 324


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 154/486 (31%), Positives = 275/486 (56%), Gaps = 13/486 (2%)

Query: 35  LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE 94
           + NV   TAL+  Y + N + +A ++F  +P  +V+SWN++I GY + G   +AL+LF +
Sbjct: 126 IKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEK 185

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           +    +     S+ + + A  Q   +     + +++     ER V+    ++    K G 
Sbjct: 186 MPERNVV----SWNTVITAFMQRRRVDEAQELFNRMP----ERDVISWTTMVAGLSKNGR 237

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQF 214
           ++DA  +F +M  ++++SWN++I   A+N  L+ AF    ++P  +  S+N +I G  Q 
Sbjct: 238 IDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQN 297

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS-KDVPMDEYTFSTM 273
           G +E A+     M + N  +W ++++G+V   R  EAL +F EMQ+  +V  +E TF ++
Sbjct: 298 GKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSV 357

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR--SLCRK 331
           L   + L+AL  G  IH  + K        V SAL++MYSKCG++E+A  +F   S+  +
Sbjct: 358 LGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHR 417

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE 391
           ++V+WN MI  YA +G   K I LF++++ +   +PD+VT++ +L+ACSH  +  D+  +
Sbjct: 418 DVVSWNGMIAAYAHHGHGHKAISLFDEMQAL-GFRPDNVTYIALLSACSHAGL-VDEGLK 475

Query: 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC 451
            FE++ +D  IK   +H   ++ L G+ G +  A   I+ L       VW ALL+     
Sbjct: 476 LFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVH 535

Query: 452 SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSW 511
             +D+ +++A ++++ E ++   Y++L N+Y S G W  A+ +R  M+++GL+K+ GCSW
Sbjct: 536 GHIDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSW 595

Query: 512 IEVENV 517
           IEV N 
Sbjct: 596 IEVGNT 601



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 179/397 (45%), Gaps = 76/397 (19%)

Query: 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175
           Q  + Q+   I S +  +S    V  +N LI   GK G + +A  VF EM D+D++SW +
Sbjct: 43  QFSTCQVVPKISSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTA 102

Query: 176 VIAASARNGNLELAFGFLHR--------------------------------LPNPDTIS 203
           VI    + G +E A     R                                +P  + IS
Sbjct: 103 VITGYIKCGMIEEAKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVIS 162

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
           +N +I G A+ G I+ A+ +   MP  N  SWN+++T ++ R RV EA  LF  M  +DV
Sbjct: 163 WNTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDV 222

Query: 264 PMDEYTFSTMLSGIAG----------------LSALTWGMLIHSCVIKQGLDASIVVA-- 305
                +++TM++G++                  + ++W  +I        LD +  +   
Sbjct: 223 ----ISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQ 278

Query: 306 ---------SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
                    + ++  + + G++E A   F  +  KN+VTW A+I+G+ ++G   + +++F
Sbjct: 279 MPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIF 338

Query: 357 EQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV-----EHCCS 411
            +++   +++P+  TF++VL ACS       K++   E       I  TV     +   +
Sbjct: 339 SEMQAANNVKPNEGTFVSVLGACS-------KLAALCEGQQIHQIISKTVYQEVADVVSA 391

Query: 412 MIRLMGQKGEVWRAQRMIRELGFGSYGVV-WRALLSA 447
           +I +  + GE+  A+++  +   G   VV W  +++A
Sbjct: 392 LINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAA 428



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 96/196 (48%), Gaps = 10/196 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE     +L A S L      QQ+H  I K+ +     V +AL+  Y K   L  A K+
Sbjct: 349 PNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKI 408

Query: 61  FVE--IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           F +  I    VVSWN +I+ Y   G   KA++LF E++      D  ++ + L+AC   G
Sbjct: 409 FDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAG 468

Query: 119 SLQLGMAIHSKIVKYSLERGVVIA----NCLIDMYGKCGSVEDAIG-VFGEMIDKDIISW 173
            +  G+ +   +V+   +R + +      CL+D++G+ G +++A   + G  +      W
Sbjct: 469 LVDEGLKLFENLVR---DRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVW 525

Query: 174 NSVIAASARNGNLELA 189
            +++A    +G+++L 
Sbjct: 526 AALLAGCNVHGHIDLG 541


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  277 bits (709), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 165/555 (29%), Positives = 295/555 (53%), Gaps = 47/555 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A   L      +++HC+  K GF  NVFV+ +L+  Y +      A  +
Sbjct: 216 PDFYTFPPVLKACGTL---VDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSL 272

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P   + SWN++ISG +Q+G   +AL++  E+    I  +  +  S L  C QLG +
Sbjct: 273 FDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDI 332

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
              M IH  ++K+ LE  + ++N LI+MY K G++EDA   F +M   D++SWNS+IAA 
Sbjct: 333 STAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAY 392

Query: 181 ARNGNLELAFGFLHRLP----NPDTISY-------------------------------- 204
            +N +   A GF  ++      PD ++                                 
Sbjct: 393 EQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMED 452

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N V++  A+ G ++ A  +   +   +  SWN+++TGY       EA+ ++  M+ 
Sbjct: 453 VVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEE 512

Query: 261 -KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            K++  ++ T+ ++L   A + AL  GM IH  VIK  L   + VA+ L+D+Y KCG++ 
Sbjct: 513 CKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLV 572

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A S+F  + +++ VTWNA+I+ +  +G   K ++LF ++     ++PD VTF+++L+AC
Sbjct: 573 DAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLD-EGVKPDHVTFVSLLSAC 631

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH+   F +  ++   + ++YGIKP+++H   M+ L+G+ G +  A   I+++       
Sbjct: 632 SHSG--FVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDAS 689

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W ALL A     ++++ + ++  + +++  +   YV+L N+Y + G W+    +R+  R
Sbjct: 690 IWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLAR 749

Query: 500 ERGLRKEAGCSWIEV 514
           ERGL+K  G S IEV
Sbjct: 750 ERGLKKTPGWSTIEV 764



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 145/553 (26%), Positives = 255/553 (46%), Gaps = 53/553 (9%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE + F+ L  SS      + + LH  ++ +G + ++F+ST L+  Y  +  ++ +   F
Sbjct: 117 NEEIDFNFLFDSSTK--TPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTF 174

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER-SEIYADAYSFTSALAACGQLGSL 120
            +IPQ  V +WNS+IS YV +G + +A+  F +L   SEI  D Y+F   L ACG L   
Sbjct: 175 DQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD- 233

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH    K   +  V +A  LI MY + G    A  +F +M  +D+ SWN++I+  
Sbjct: 234 --GRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGL 291

Query: 181 ARNGNLELAFGFLHRL-------------------PNPDTISY----------------- 204
            +NGN   A   L  +                   P    IS                  
Sbjct: 292 IQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDL 351

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +IN  A+FG++EDA      M   +  SWNSI+  Y   +    A   F +MQ  
Sbjct: 352 FVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLN 411

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEI 320
               D  T  ++ S +A          +H  ++++G L   +V+ +A++DMY+K G ++ 
Sbjct: 412 GFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDS 471

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  +  K++++WN +ITGYA+NG  ++ IE+++ ++  +++ P+  T++++L A +
Sbjct: 472 AHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYA 531

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H       +  +   +  +  +   V  C  +I + G+ G +  A  +  ++   S  V 
Sbjct: 532 HVGALQQGMRIHGRVIKTNLHLDVFVATC--LIDVYGKCGRLVDAMSLFYQVPQES-SVT 588

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYV-YVMLCNLYTSHGNWDVASVMRNFMR 499
           W A++S  G     +       E++      D+V +V L +  +  G  +        M+
Sbjct: 589 WNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ 648

Query: 500 ERGLR---KEAGC 509
           E G++   K  GC
Sbjct: 649 EYGIKPSLKHYGC 661


>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
          Length = 914

 Score =  277 bits (709), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 170/523 (32%), Positives = 272/523 (52%), Gaps = 24/523 (4%)

Query: 8   HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP 67
           HL      L    + ++LH  +LK G   N   +  L+  Y  +  L  + ++F  I  P
Sbjct: 354 HLASLPRGLPRAAHVRELHAQVLKQGLHLNPRAAARLVSAYALLRLLPSSRRVFDAIRDP 413

Query: 68  SVVSW--NSLISGYVQSGKYRKALNLFVELERSEIYADAYSF-TSALAACGQLGSLQLGM 124
              ++  N+++  Y   G  R AL  F  + R + +   YSF   AL+A G    +    
Sbjct: 414 HADAFLANTMLRAYALGGAPRDALAAFSAMPRRDSFT--YSFLIKALSAAG----VAPVR 467

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
           A+HS +VK        + N LID Y K G   DA  VF EM ++D++SWN+ +AA  R G
Sbjct: 468 AVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREG 527

Query: 185 NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
            L  A      +P  DT+S+N +++G  + G++E A  +   MP  N  SW+++++GY  
Sbjct: 528 ELAGARKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCK 587

Query: 245 RNRVPEALHLFGEMQSKD------------VPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
           +  +  A  +F +M  K+            V +D     ++L+  A   +L+ G  IH  
Sbjct: 588 KGDLEMARVIFDKMPGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRY 647

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS-LCRKNLVTWNAMITGYARNGDLTK 351
           V K+ L  S  V +AL+DM+ KCG V  AD +F +   +K+ V+WN++I G+A +G   K
Sbjct: 648 VRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDK 707

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411
            +ELF Q+K  +   PD+VT +NVL+AC+H     D+   YF +M +DYGI P +EH   
Sbjct: 708 ALELFAQMKQ-QGFNPDAVTMINVLSACTHMGF-VDEGRRYFSNMERDYGIMPQIEHYGC 765

Query: 412 MIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471
           MI L+G+ G +  A  +I+ + +    V+W +LLSA     +++ A I+  E+ KL+  +
Sbjct: 766 MIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSN 825

Query: 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
              Y +L N+Y   G W   +  R  M+  G +K AG SW+E+
Sbjct: 826 AGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVEL 868


>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
          Length = 981

 Score =  277 bits (709), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 169/556 (30%), Positives = 281/556 (50%), Gaps = 42/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  L+   +     ++   +H   L+S   S+V V  AL+  Y     L+DA  +
Sbjct: 244 PDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFL 303

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  ++SWN++IS YVQ+     AL    +L  +    +  +F+SAL AC   G+L
Sbjct: 304 FWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGAL 363

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H+ +++ SL+R +++ N LI MYGKC S+EDA  VF  M   D++S+N +I   
Sbjct: 364 IDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNVLIGGY 423

Query: 181 A--RNG-----------------------NLELAF---GFLHRLPNP------------D 200
           A   +G                       N+  +F     LH    P            D
Sbjct: 424 AVLEDGTKAMQVFSWIRSAGIKPNYITMINIHGSFTSSNDLHNYGRPLHAYIIRTGFLSD 483

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +I   A+ G++E +  I +S+ + N  SWN+I+          EAL LF +MQ 
Sbjct: 484 EYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEALKLFIDMQH 543

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
               +D    +  LS  A L++L  GM +H   +K GLD+   V +A +DMY KCG++  
Sbjct: 544 AGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMNE 603

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
              M      +    WN +I+GYA+ G   +  E F+Q+  +   +PD VTF+ +L+ACS
Sbjct: 604 MLQMVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVAM-GRKPDYVTFVALLSACS 662

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H  +  DK  +Y+ SM   +G+ P ++HC  ++ L+G+ G    A+R I E+      ++
Sbjct: 663 HAGL-VDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAERFIEEMPVLPNDLI 721

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           WR+LLS+S    +L++ R +A ++++L+   D  YV+L NLY ++  W     +R+ M+ 
Sbjct: 722 WRSLLSSSRTHKNLEIGRKAAKKLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMKT 781

Query: 501 RGLRKEAGCSWIEVEN 516
             + K   CSW++++N
Sbjct: 782 ININKRPACSWLKLKN 797



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 196/391 (50%), Gaps = 42/391 (10%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H    ++G + NV++ TAL+  Y     ++DA ++F E+P+ +VVSW +L+     +G 
Sbjct: 66  IHALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVALSSNGY 125

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
             + L  + ++ R  +  +A +F + ++ CG L +   G+ + S ++   L+  V +AN 
Sbjct: 126 LEETLRAYRQMRREGVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVANS 185

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF----GFLHRLPNPD 200
           LI M+G  G V+DA  +F  M + D IS N++I+  +  G     F       H    PD
Sbjct: 186 LITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPD 245

Query: 201 TISY-----------------------------------NEVINGIAQFGDIEDAIMILS 225
             +                                    N ++N  +  G + DA  +  
Sbjct: 246 ATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFW 305

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLSALT 284
           +M   +  SWN++++ YV      +AL   G++  + ++P +  TFS+ L   +   AL 
Sbjct: 306 NMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIP-NHLTFSSALGACSSPGALI 364

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G ++H+ V++  L  +++V ++L+ MY KC  +E A+ +F+S+   ++V++N +I GYA
Sbjct: 365 DGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNVLIGGYA 424

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
              D TK +++F  +++   ++P+ +T +N+
Sbjct: 425 VLEDGTKAMQVFSWIRSA-GIKPNYITMINI 454



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 187/397 (47%), Gaps = 41/397 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+  +++ SG  + V V+ +L+  +  +  + DA K+F  + +   +S N++IS Y   G
Sbjct: 166 QVASHVIVSGLQNQVSVANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQG 225

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
              K   +F ++    +  DA +  S ++ C        G  IHS  ++ SL+  V + N
Sbjct: 226 ICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVIN 285

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------P 197
            L++MY   G + DA  +F  M  +D+ISWN++I++  +N N   A   L +L      P
Sbjct: 286 ALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIP 345

Query: 198 NPDTISY---------------------------------NEVINGIAQFGDIEDAIMIL 224
           N  T S                                  N +I    +   +EDA  + 
Sbjct: 346 NHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVF 405

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL- 283
            SMP+ +  S+N ++ GY       +A+ +F  ++S  +  +  T   +       + L 
Sbjct: 406 QSMPTHDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINIHGSFTSSNDLH 465

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
            +G  +H+ +I+ G  +   VA++L+ MY+KCG +E + ++F S+  KN+V+WNA+I   
Sbjct: 466 NYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAAN 525

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A+ G   + ++LF  ++   + + D V     L++C+
Sbjct: 526 AQLGHGEEALKLFIDMQHAGN-KLDRVCLAECLSSCA 561



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 167/359 (46%), Gaps = 43/359 (11%)

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG---SL 120
           +P  +  +W + +SG V+ G+   A  L   +    +    ++  S + AC + G    +
Sbjct: 1   MPDRTPSTWYTAVSGCVRCGRDVAAFELLRGMRERGVPLSGFALASLVTACERRGRDEGI 60

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G AIH+   +  L   V I   L+ +YG  G V DA  +F EM +++++SW +++ A 
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVAL 120

Query: 181 ARNGNLE--------------------------LAFGFLHRLPNPDTISY---------- 204
           + NG LE                          L     + +P     S+          
Sbjct: 121 SSNGYLEETLRAYRQMRREGVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQV 180

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I      G ++DA  +   M   ++ S N++++ Y ++    +   +F +M+  
Sbjct: 181 SVANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHH 240

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D  T  +++S  A     + G  IHS  ++  LD+S+ V +AL++MYS  G++  A
Sbjct: 241 GLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDA 300

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           + +F ++ R++L++WN MI+ Y +N + T  ++   QL    ++ P+ +TF + L ACS
Sbjct: 301 EFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEI-PNHLTFSSALGACS 358


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 159/560 (28%), Positives = 286/560 (51%), Gaps = 42/560 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL A + +G     +QLH Y+LK+G   +     +L+  Y K   +  AH +
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    + +VV WN ++  Y Q     K+  +F +++ + I+ + +++   L  C   G +
Sbjct: 303 FNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQI 362

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IHS  +K   E  + ++  LIDMY K G ++ A  +   +  +D++SW S+IA  
Sbjct: 363 ELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGY 422

Query: 181 ARNGNLELAFGFLHRLPN----PDTIS--------------------------------- 203
            ++   E A      + +    PD I                                  
Sbjct: 423 VQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADI 482

Query: 204 --YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
             +N ++N  A+ G  E+A  +   +   +  +WN +++G+       +AL +F +M   
Sbjct: 483 SIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQA 542

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
               + +TF + +S +A L+ +  G  +H   +K G  +   VA+AL+ +Y KCG +E A
Sbjct: 543 GAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDA 602

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  +N V+WN +IT  +++G   + ++LF+Q+K    L+P+ VTF+ VLAACSH
Sbjct: 603 KMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQ-EGLKPNDVTFIGVLAACSH 661

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  + +S YF+SM+  YG+ P  +H   ++ ++G+ G++ RA+R + E+   +  ++W
Sbjct: 662 VGLVEEGLS-YFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIW 720

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LLSA     ++++  ++A  +++LE      YV+L N Y   G W     +R  M++R
Sbjct: 721 RTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDR 780

Query: 502 GLRKEAGCSWIEVENVAAHS 521
           G+RKE G SWIEV+N A H+
Sbjct: 781 GIRKEPGRSWIEVKN-AVHA 799



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/487 (25%), Positives = 227/487 (46%), Gaps = 45/487 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  YVL  +L A +        + +H  + K  F S  FV  AL+  Y    S   A ++
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERV 201

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++     V++N+LISG+ Q G    AL +F E++ S +  D  +  S LAAC  +G L
Sbjct: 202 FCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDL 261

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           Q G  +HS ++K  +    +    L+D+Y KCG +E A  +F      +++ WN ++ A 
Sbjct: 262 QKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAY 321

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVI---------------------NGI---- 211
            +  +L  +F    ++     +P+  +Y  ++                     NG     
Sbjct: 322 GQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDM 381

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     +++G ++ A  IL  +   +  SW S++ GYV  +   EAL  F EMQ  
Sbjct: 382 YVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDC 441

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  D    ++  S  AG+ A+  G+ IH+ V   G  A I + + L+++Y++CG+ E A
Sbjct: 442 GVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEA 501

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            S+FR +  K+ +TWN +I+G+ ++    + + +F ++      + +  TF++ ++A ++
Sbjct: 502 FSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQA-GAKYNVFTFISAISALAN 560

Query: 382 -TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
             DI   K  +         G     E   ++I L G+ G +  A+ +  E+   +  V 
Sbjct: 561 LADI---KQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNE-VS 616

Query: 441 WRALLSA 447
           W  ++++
Sbjct: 617 WNTIITS 623



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 103/465 (22%), Positives = 207/465 (44%), Gaps = 43/465 (9%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           ++H   +  G  ++  +   L+  Y K   +  A ++F E+     VSW +++SGY QSG
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
             ++A  L+ ++  + +    Y  +S L+AC +      G  IH+++ K +      + N
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGN 183

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NP 199
            LI +Y   GS + A  VF +M+  D +++N++I+  A+ G+ E A      +      P
Sbjct: 184 ALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRP 243

Query: 200 DTISYNEVINGIA-----------------------------------QFGDIEDAIMIL 224
           D ++   ++   A                                   + GDIE A  I 
Sbjct: 244 DCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF 303

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
           +     N   WN +L  Y   + + ++  +FG+MQ+  +  +++T+  +L        + 
Sbjct: 304 NLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIE 363

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  IHS  IK G ++ + V+  L+DMYSK G ++ A  +   L ++++V+W +MI GY 
Sbjct: 364 LGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYV 423

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           ++    + +  F++++    + PD++   +  +AC+        +  +       Y    
Sbjct: 424 QHDFCEEALATFKEMQDC-GVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADI 482

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
           ++ +  +++ L  + G    A  + RE+      + W  L+S  G
Sbjct: 483 SIWN--TLVNLYARCGRSEEAFSLFREIEHKDE-ITWNGLISGFG 524



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 142/316 (44%), Gaps = 41/316 (12%)

Query: 107 FTSALAAC-GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
            T AL AC G+     L + IH+  V   L    +I N LID+Y K G V  A  VF E+
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKEL 104

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRL------PNP-------------------- 199
             +D +SW ++++  A++G  + AF    ++      P P                    
Sbjct: 105 SSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGR 164

Query: 200 -------------DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246
                        +T   N +I     FG  + A  +   M   +  ++N++++G+    
Sbjct: 165 MIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCG 224

Query: 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
               AL +F EMQ   +  D  T +++L+  A +  L  G  +HS ++K G+    +   
Sbjct: 225 HGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEG 284

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
           +LLD+Y KCG +E A  +F    R N+V WN M+  Y +  DL K  E+F Q++    + 
Sbjct: 285 SLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQAT-GIH 343

Query: 367 PDSVTFLNVLAACSHT 382
           P+  T+  +L  C+ T
Sbjct: 344 PNQFTYPCILRTCTCT 359


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 164/512 (32%), Positives = 259/512 (50%), Gaps = 65/512 (12%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG------------ 83
             V   TA+M  Y ++  +  A  +F EI  P+VV+WN++I+GY Q+G            
Sbjct: 456 QTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKM 515

Query: 84  -------------------KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
                              + R+AL L +EL RS       SFTSAL+AC  +G +++G 
Sbjct: 516 PVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGR 575

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
            IHS  +K   +    + N LI MY KCG+VED   VF  +  KD +SWNS+I+  + N 
Sbjct: 576 VIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENY 635

Query: 185 NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
            L+ A     ++P  D +S                               W +I++ YV 
Sbjct: 636 MLDDARVVFEKMPKRDVVS-------------------------------WTAIISAYVQ 664

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV 304
                 AL LF +M ++ +  ++ T +++LS    L A+  G   H+ + K G D  + V
Sbjct: 665 AGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFV 724

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
            ++L+ MY KCG  E    +F  +   +L+TWNA++ G A+NG   + I++FEQ++ V  
Sbjct: 725 GNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQME-VEG 782

Query: 365 LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424
           + PD ++FL VL ACSH  +  D+   +F SMT+ YGI P V H   M+ L+G+ G +  
Sbjct: 783 ILPDQMSFLGVLCACSHAGL-VDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSE 841

Query: 425 AQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484
           A+ +I  +      V+W ALL A     ++++ +  A  + ++       YV+L NL+ S
Sbjct: 842 AEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFAS 901

Query: 485 HGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            G WD  + +R  M+++GL KE G SWI+V+N
Sbjct: 902 QGMWDKVAEIRKLMKDQGLTKEPGISWIQVKN 933



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/436 (27%), Positives = 220/436 (50%), Gaps = 49/436 (11%)

Query: 54  LADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
           +++A ++F ++P+ + VSW  +ISGYV    Y +A ++FV++ R+    D   F   L+A
Sbjct: 311 MSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSA 370

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISW 173
              L  L+L  ++    +K   E  VV+ + +++ Y + GS++ A+  F  M +++  SW
Sbjct: 371 ITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSW 430

Query: 174 NSVIAASARNGNLELAFGFLHRLP-------------------------------NPDTI 202
            ++IAA A+ G L+ A     R+P                               NP+ +
Sbjct: 431 TTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVV 490

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSK 261
           ++N +I G  Q G +++A  +   MP  NS+SW +++ G+V      EAL L  E+ +S 
Sbjct: 491 AWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSG 550

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            VP D  +F++ LS  A +  +  G +IHS  IK G   +  V + L+ MY+KCG VE  
Sbjct: 551 SVPSDS-SFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDG 609

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA--- 378
             +FR++  K+ V+WN++I+G + N  L     +FE++      + D V++  +++A   
Sbjct: 610 SHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMP-----KRDVVSWTAIISAYVQ 664

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQR---MIRELGFG 435
             H ++  D    + + + +  GIKP      S++   G  G +   ++   +I +LGF 
Sbjct: 665 AGHGEVALDL---FLDMLAR--GIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFD 719

Query: 436 SYGVVWRALLSASGAC 451
           ++  V  +L++    C
Sbjct: 720 TFLFVGNSLITMYFKC 735



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 165/349 (47%), Gaps = 46/349 (13%)

Query: 18  WDTYCQQLHCYIL-KSGFLSNVFVSTALMGFYRKINSLA------DAHKMFVEIPQPSVV 70
           W  Y QQ    I  KSG  +     T L     +I  L       +A ++F E+ Q  VV
Sbjct: 144 WMDYLQQFKFVIRHKSGAKNKETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVV 203

Query: 71  SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKI 130
           SWNS+I+GY Q+GK  +A  LF          DA+                +G  I +  
Sbjct: 204 SWNSMINGYSQNGKVDEARLLF----------DAF----------------VGKNIRTWT 237

Query: 131 VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF 190
           +             L+  Y K G +E+A  VF  M +++++SWN++I+   +NG+L+ A 
Sbjct: 238 I-------------LLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNAR 284

Query: 191 GFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE 250
                +P  +  S+N V+ G      + +A  +   MP  NS SW  +++GYV+ +   E
Sbjct: 285 KLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWE 344

Query: 251 ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLD 310
           A  +F +M       D+  F  +LS I GL  L     +    IK G +  +VV SA+L+
Sbjct: 345 AWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILN 404

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            Y++ G +++A   F ++  +N  +W  MI  +A+ G L   I+L+E++
Sbjct: 405 AYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERV 453



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 122/262 (46%), Gaps = 36/262 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++      L A +++G     + +H   +K+G   N +V   L+  Y K  ++ D   +
Sbjct: 553 PSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHV 612

Query: 61  FVEIPQPSVVSWNSLISG-------------------------------YVQSGKYRKAL 89
           F  I     VSWNSLISG                               YVQ+G    AL
Sbjct: 613 FRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVAL 672

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
           +LF+++    I  +  + TS L+ACG LG+++LG   H+ I K   +  + + N LI MY
Sbjct: 673 DLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMY 732

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYN 205
            KCG  ED   VF EM + D+I+WN+V+   A+NG  + A     ++      PD +S+ 
Sbjct: 733 FKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFL 791

Query: 206 EVINGIAQFGDIEDAIMILSSM 227
            V+   +  G +++     +SM
Sbjct: 792 GVLCACSHAGLVDEGWAHFNSM 813


>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 597

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 163/532 (30%), Positives = 283/532 (53%), Gaps = 42/532 (7%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H +I+++GF SN+ +ST L+ FY K     +A K+F  +P+ +VVSW + ISGY ++G 
Sbjct: 59  IHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMPERNVVSWTAQISGYAKNGH 118

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           Y+ AL +F ++ R+ + A+ +++ S L AC  L  L+ GM IH  I K      + + + 
Sbjct: 119 YQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQIHGCIQKNRFIGNLFVQSA 178

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA----RNGNLELAFGFLHRLPNPD 200
           L+D++ KCG++EDA  +F  M ++D++SWN+VI   A     + +  + +  +     PD
Sbjct: 179 LVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPD 238

Query: 201 TISYNEVING----------------IAQFG-------------------DIEDAIMILS 225
             +   V+                  I Q G                    ++ A  +  
Sbjct: 239 CFTLGSVLKASSRANNLIKVCQIHGIIIQLGFGSHIDLNGSLIDAYAKSEGMKSASALYK 298

Query: 226 SMPSPNSSSWNSILTGYVNR-NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
           SM   +  S+ +I+TGY  + +   EAL LF +MQ   + +D+ TF TML+  A +++L+
Sbjct: 299 SMLKKDVISFTAIMTGYARKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLS 358

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  IH+  IK      +   +AL+DMY+K G++E A   F  +  KN+++W ++ITGY 
Sbjct: 359 IGRQIHALAIKYKPSYDVATGNALVDMYAKSGEIEDATRAFYEMKEKNVISWTSLITGYG 418

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           ++G   + I L+++++    L+P+ +TFL++L ACSH+ +  +   E F +M   Y I P
Sbjct: 419 KHGYGHEAIALYKKME-YEGLKPNDITFLSLLFACSHSGLTGEGW-ECFNNMITKYNILP 476

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
             EH   MI L  + G++  A  MI ++       +W A+L A      + +  ++A  +
Sbjct: 477 RAEHYSCMIDLFARGGQLEEAYNMICKMNIKPNSSLWGAILGACSIYGHMSLGEVAATHL 536

Query: 465 IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           ++++ ++   YV+L  +Y + G+WD A  MRN M  R L+K  G S I+  N
Sbjct: 537 LRMDPENSANYVVLAGIYAASGSWDKACRMRNLMEYRSLKKIPGYSIIQSTN 588



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 169/374 (45%), Gaps = 46/374 (12%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N++    +LRA + L       Q+H  I K+ F+ N+FV +AL+  + K  ++ DA  +F
Sbjct: 137 NQFTYGSVLRACTGLRCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLF 196

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             + +  VVSWN++I GY        +  +F  +    +  D ++  S L A  +  +L 
Sbjct: 197 ETMSERDVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLI 256

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
               IH  I++      + +   LID Y K   ++ A  ++  M+ KD+IS+ +++   A
Sbjct: 257 KVCQIHGIIIQLGFGSHIDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYA 316

Query: 182 RNGNL----------------------------------ELAFGF-LHRL-----PNPDT 201
           R  +                                    L+ G  +H L     P+ D 
Sbjct: 317 RKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLSIGRQIHALAIKYKPSYDV 376

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
            + N +++  A+ G+IEDA      M   N  SW S++TGY       EA+ L+ +M+ +
Sbjct: 377 ATGNALVDMYAKSGEIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYE 436

Query: 262 DVPMDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            +  ++ TF ++L     +GL+   W    ++ + K  +       S ++D++++ GQ+E
Sbjct: 437 GLKPNDITFLSLLFACSHSGLTGEGWECF-NNMITKYNILPRAEHYSCMIDLFARGGQLE 495

Query: 320 IADSMFRSLCRKNL 333
            A +M   +C+ N+
Sbjct: 496 EAYNM---ICKMNI 506



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 178/383 (46%), Gaps = 44/383 (11%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
           +   L  C +   L+ G  IHS I++   +  + ++  LI  Y K G   +A  VF  M 
Sbjct: 40  YMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMP 99

Query: 167 DKDIISWNSVIAASARNGNLE---LAFGFLHRLP-NPDTISYNEV--------------- 207
           +++++SW + I+  A+NG+ +   L F  + R     +  +Y  V               
Sbjct: 100 ERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQ 159

Query: 208 INGIAQ--------------------FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
           I+G  Q                     G++EDA  +  +M   +  SWN+++ GY  ++ 
Sbjct: 160 IHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYAAQDF 219

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307
             ++  +F  M  + V  D +T  ++L   +  + L     IH  +I+ G  + I +  +
Sbjct: 220 NDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQIHGIIIQLGFGSHIDLNGS 279

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK-VIELFEQLKTVRDLQ 366
           L+D Y+K   ++ A ++++S+ +K+++++ A++TGYAR    ++  ++LF+ ++ +  ++
Sbjct: 280 LIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKDMQHIF-ME 338

Query: 367 PDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426
            D VTF  +L  C+  DI    +     ++   Y     V    +++ +  + GE+  A 
Sbjct: 339 IDDVTFCTMLNVCA--DIASLSIGRQIHALAIKYKPSYDVATGNALVDMYAKSGEIEDAT 396

Query: 427 RMIRELGFGSYGVVWRALLSASG 449
           R   E+   +  + W +L++  G
Sbjct: 397 RAFYEMKEKNV-ISWTSLITGYG 418


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 154/486 (31%), Positives = 274/486 (56%), Gaps = 13/486 (2%)

Query: 35  LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE 94
           + NV   TAL+  Y + N + +A ++F  +P  +V+SWN++I GY + G   +AL+LF  
Sbjct: 126 IKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEX 185

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           +    +     S+ + + A  Q   +     + +++     ER V+    ++    K G 
Sbjct: 186 MPERNVV----SWNTVITAFMQRRRVDEAQELFNRMP----ERDVISWTTMVAGLSKNGR 237

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQF 214
           ++DA  +F +M  ++++SWN++I   A+N  L+ AF    ++P  +  S+N +I G  Q 
Sbjct: 238 IDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQN 297

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS-KDVPMDEYTFSTM 273
           G +E A+     M + N  +W ++++G+V   R  EAL +F EMQ+  +V  +E TF ++
Sbjct: 298 GKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSV 357

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR--SLCRK 331
           L   + L+AL  G  IH  + K        V SAL++MYSKCG++E+A  +F   S+  +
Sbjct: 358 LGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHR 417

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE 391
           ++V+WN MI  YA +G   K I LF++++ +   +PD+VT++ +L+ACSH  +  D+  +
Sbjct: 418 DVVSWNGMIAAYAHHGHGHKAISLFDEMQAL-GFRPDNVTYIALLSACSHAGL-VDEGLK 475

Query: 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC 451
            FE++ +D  IK   +H   ++ L G+ G +  A   I+ L       VW ALL+     
Sbjct: 476 LFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVH 535

Query: 452 SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSW 511
             +D+ +++A ++++ E ++   Y++L N+Y S G W  A+ +R  M+++GL+K+ GCSW
Sbjct: 536 GHIDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSW 595

Query: 512 IEVENV 517
           IEV N 
Sbjct: 596 IEVGNT 601



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 179/397 (45%), Gaps = 76/397 (19%)

Query: 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175
           Q  + Q+   I S +  +S    V  +N LI   GK G + +A  VF EM D+D++SW +
Sbjct: 43  QFSTCQVVPKISSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTA 102

Query: 176 VIAASARNGNLELAFGFLHR--------------------------------LPNPDTIS 203
           VI    + G +E A     R                                +P  + IS
Sbjct: 103 VITGYIKCGMIEEAKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVIS 162

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
           +N +I G A+ G I+ A+ +   MP  N  SWN+++T ++ R RV EA  LF  M  +DV
Sbjct: 163 WNTMIEGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDV 222

Query: 264 PMDEYTFSTMLSGIAG----------------LSALTWGMLIHSCVIKQGLDASIVVA-- 305
                +++TM++G++                  + ++W  +I        LD +  +   
Sbjct: 223 ----ISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQ 278

Query: 306 ---------SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
                    + ++  + + G++E A   F  +  KN+VTW A+I+G+ ++G   + +++F
Sbjct: 279 MPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIF 338

Query: 357 EQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV-----EHCCS 411
            +++   +++P+  TF++VL ACS       K++   E       I  TV     +   +
Sbjct: 339 SEMQAANNVKPNEGTFVSVLGACS-------KLAALCEGQQIHQIISKTVYQEVADVVSA 391

Query: 412 MIRLMGQKGEVWRAQRMIRELGFGSYGVV-WRALLSA 447
           +I +  + GE+  A+++  +   G   VV W  +++A
Sbjct: 392 LINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAA 428



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 96/196 (48%), Gaps = 10/196 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE     +L A S L      QQ+H  I K+ +     V +AL+  Y K   L  A K+
Sbjct: 349 PNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKI 408

Query: 61  FVE--IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           F +  I    VVSWN +I+ Y   G   KA++LF E++      D  ++ + L+AC   G
Sbjct: 409 FDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAG 468

Query: 119 SLQLGMAIHSKIVKYSLERGVVIA----NCLIDMYGKCGSVEDAIG-VFGEMIDKDIISW 173
            +  G+ +   +V+   +R + +      CL+D++G+ G +++A   + G  +      W
Sbjct: 469 LVDEGLKLFENLVR---DRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVW 525

Query: 174 NSVIAASARNGNLELA 189
            +++A    +G+++L 
Sbjct: 526 AALLAGCNVHGHIDLG 541


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 167/547 (30%), Positives = 285/547 (52%), Gaps = 42/547 (7%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           L++  + +   +  +QLH   +++  LS+   S  ++  Y  +  L +A  +F  +  P 
Sbjct: 11  LIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASI-VISIYTNLKLLHEALLVFKTLESPP 69

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           V++W S+I  +     + +AL  FVE+  S    D   F S L +C  +  L+ G ++H 
Sbjct: 70  VLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHG 129

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
            IV+  ++  +   N L++MY K   ++    VF  M  KD++S+N+VIA  A++G  E 
Sbjct: 130 FIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYED 189

Query: 189 AFGFLHRL------PNPDTIS--------YNEVING------------------------ 210
           A   +  +      P+  T+S        Y +V+ G                        
Sbjct: 190 ALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVD 249

Query: 211 -IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
             A+   IED+  + S +   +S SWNS++ GYV   R  EAL LF +M S  V      
Sbjct: 250 MYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVA 309

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           FS+++   A L+ L  G  +H  V++ G   +I +ASAL+DMYSKCG ++ A  +F  + 
Sbjct: 310 FSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMN 369

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389
             + V+W A+I G+A +G   + + LFE++K  + ++P+ V F+ VL ACSH  +  D+ 
Sbjct: 370 LHDEVSWTAIIMGHALHGHGHEAVSLFEEMKR-QGVKPNQVAFVAVLTACSHVGL-VDEA 427

Query: 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
             YF SMTK YG+   +EH  ++  L+G+ G++  A   I ++     G VW  LLS+  
Sbjct: 428 WGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCS 487

Query: 450 ACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGC 509
              +L++A   A ++  ++ ++   YV++CN+Y S+G W   + +R  +R++GLRK+  C
Sbjct: 488 VHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPAC 547

Query: 510 SWIEVEN 516
           SWIE++N
Sbjct: 548 SWIEMKN 554


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 152/498 (30%), Positives = 264/498 (53%), Gaps = 40/498 (8%)

Query: 24   QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
            Q+H  + KS    +V++ +AL+  Y K     +A ++F  +P+ ++VSWNSLI+ Y Q+G
Sbjct: 913  QVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNG 972

Query: 84   KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER-GVVIA 142
               +AL LFV + ++    D  +  S ++AC  L + + G  +H+++VK    R  +V++
Sbjct: 973  PVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLS 1032

Query: 143  NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
            N L+DMY KCG    A  VF  M  + ++S  S+I                         
Sbjct: 1033 NALVDMYAKCGRTRAARCVFDRMASRSVVSETSLI------------------------- 1067

Query: 203  SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                   G A+  ++EDA M+ S M   N  +WN ++  Y       EAL LF  ++ + 
Sbjct: 1068 ------TGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRES 1121

Query: 263  VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL------DASIVVASALLDMYSKCG 316
            V    YT+  +L+    ++ L  G   H  V+K+G       ++ + V ++L+DMY K G
Sbjct: 1122 VWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTG 1181

Query: 317  QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
             ++    +F  +  ++ V+WNAMI G+A+NG     + LFE++   ++  PDSVT + VL
Sbjct: 1182 SIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKE-SPDSVTMIGVL 1240

Query: 377  AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
            +AC H+ +  ++   YF SMT+D+GI P+ +H   MI L+G+ G +   + +I+E+    
Sbjct: 1241 SACGHSGL-VEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEP 1299

Query: 437  YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
              V+W +LL +     ++++   +A ++ +L+  +   YV+L N+Y   G W     +R+
Sbjct: 1300 DAVLWASLLGSCRLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRS 1359

Query: 497  FMRERGLRKEAGCSWIEV 514
             M+ RG+ K+ GCSWIE+
Sbjct: 1360 SMKHRGVSKQPGCSWIEI 1377



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 237/492 (48%), Gaps = 78/492 (15%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH +I K  F SNV + TAL+  Y     LADA + F +I +P+ +SWN ++  Y  +
Sbjct: 171 RQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLA 230

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G    A+++F  +  + +    Y+ + A+ AC    +L+ G  IH+ ++++  E  V + 
Sbjct: 231 GMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVR 290

Query: 143 NCLIDMYGKCGSVE-------------------------------DAIGVFGEMIDKDII 171
           + ++DMY KCG+++                               DA  VF  M +++++
Sbjct: 291 SSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLV 350

Query: 172 SWNSVIAASARNGNLELAFGFLHRLPNP----DTISYNEVIN---GIAQFGDIED----A 220
           SWN+++    R+ +L  A     ++       D I+   V++   GI   G  E+    A
Sbjct: 351 SWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFA 410

Query: 221 I-----------------------------MILSSMPSPNSS-SWNSILTGYVNRNRVPE 250
           I                             ++L  M S   S SWNS+++GY   +    
Sbjct: 411 IKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEA 470

Query: 251 ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLD 310
           AL+   +MQS+  P ++ TFS+ L+  A +  L  GM IH+ +I++G +   ++ S L+D
Sbjct: 471 ALYALTKMQSEVTP-NQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLID 529

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370
           MY KC Q + +  +F +   ++++ WN+MI G A +G     ++LF++++  + ++ DSV
Sbjct: 530 MYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQK-QGIKADSV 588

Query: 371 TFLNVLAAC-SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429
           TFL  L +C S   +   +   YF ++  D  I P +EH   MI L+G+ G +   +  +
Sbjct: 589 TFLGALVSCISEGHVRLGR--SYF-TLMMDESIIPRIEHYECMIELLGKHGCMVELEDFV 645

Query: 430 RELGFGSYGVVW 441
             + F     +W
Sbjct: 646 EHMPFEPTTAMW 657



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 115/207 (55%), Gaps = 1/207 (0%)

Query: 174  NSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS 233
            N++++A AR G L  A      +P+P+T SYN +++  A+ G   DA  +  ++P P+  
Sbjct: 799  NTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDPDQC 858

Query: 234  SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
            S+N+++      +R  +AL     M + D  ++ Y+F++ LS  A       G+ +H+ V
Sbjct: 859  SYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALV 918

Query: 294  IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
             K      + + SALLDMY+KC   E A  +F ++  +N+V+WN++IT Y +NG + + +
Sbjct: 919  SKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEAL 978

Query: 354  ELFEQLKTVRDLQPDSVTFLNVLAACS 380
             LF  +       PD VT  +V++AC+
Sbjct: 979  VLFVSMMKA-GFVPDEVTLASVMSACA 1004



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 174/413 (42%), Gaps = 80/413 (19%)

Query: 47  FYRKINSLA------DAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEI 100
           F R I SLA      DA ++F  +P     SWN++I+   ++G   +AL+LF  +    I
Sbjct: 88  FNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGI 147

Query: 101 YADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIG 160
                +  S L+ C +   L     +H  I K   +  V++   L+D+YG C  + DA  
Sbjct: 148 RPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARR 207

Query: 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------PNPDTISY---------- 204
            F ++++ + ISWN ++      G  ++A     R+      P   T+S+          
Sbjct: 208 AFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNA 267

Query: 205 -----------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTG 241
                                  + V++  A+ G ++ A  + +  P  +     SI++G
Sbjct: 268 LEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSG 327

Query: 242 YVNRNRVPE-------------------------------ALHLFGEMQSKDVPMDEYTF 270
             +  R+ +                               AL LF +M+ +    D  T 
Sbjct: 328 LASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITL 387

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS--MFRSL 328
            ++LS   G+  +  G  +H+  IK G  +S ++ +AL+ MYSKCG +  A+   +F   
Sbjct: 388 GSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMG 447

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             ++  +WN++I+GY R+        L+   K   ++ P+  TF + LAAC++
Sbjct: 448 SERDSYSWNSLISGYERHS--MSEAALYALTKMQSEVTPNQSTFSSALAACAN 498



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 120/241 (49%), Gaps = 17/241 (7%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL------SNVFVSTALMGFYRKINSL 54
            P  Y   ++L A  ++      QQ H ++LK GF       S+VFV  +L+  Y K  S+
Sbjct: 1124 PTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSI 1183

Query: 55   ADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC 114
             D  K+F  +     VSWN++I G+ Q+G+ + AL+LF  +  S+   D+ +    L+AC
Sbjct: 1184 DDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSAC 1243

Query: 115  GQLGSLQLGMAIHSKIVKYSLERGVVIAN----CLIDMYGKCGSVEDAIGVFGEM-IDKD 169
            G  G ++ G      + +   + G++ +     C+ID+ G+ G +++   +  EM ++ D
Sbjct: 1244 GHSGLVEEGRRYFRSMTE---DHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPD 1300

Query: 170  IISWNSVIAASARNGNLEL---AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
             + W S++ +   + N+E+   A G L  L   ++  Y  + N  A+ G   D   + SS
Sbjct: 1301 AVLWASLLGSCRLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSS 1360

Query: 227  M 227
            M
Sbjct: 1361 M 1361



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/424 (20%), Positives = 186/424 (43%), Gaps = 54/424 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSL------ 54
           P  Y + H + A  D       + +H ++L+ G+  +V V ++++  Y K  ++      
Sbjct: 250 PLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSL 309

Query: 55  -------------------------ADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKAL 89
                                    ADA ++F  + + ++VSWN++++GY++S     AL
Sbjct: 310 FNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGAL 369

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
            LF ++ +     DA +  S L+AC  +  +  G  +H+  +K       ++ N L+ MY
Sbjct: 370 LLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMY 429

Query: 150 GKCGSVEDA--IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---PDTISY 204
            KCG +  A  + +F    ++D  SWNS+I+   R+   E A   L ++ +   P+  ++
Sbjct: 430 SKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSEVTPNQSTF 489

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPN---SSSWNSILTG-YVNRNRVPEALHLFGEMQS 260
           +  +   A    ++  + I + M            S+L   Y    +   ++ +F    S
Sbjct: 490 SSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPS 549

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA-SIVVASALLDMYSKCGQVE 319
           +DV +    +++M+ G A      +G+ +   + KQG+ A S+    AL+   S+ G V 
Sbjct: 550 RDVIL----WNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISE-GHVR 604

Query: 320 IADSMFRSLCRKNLVT----WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           +  S F  +  ++++     +  MI    ++G + ++ +  E +      +P +  +L +
Sbjct: 605 LGRSYFTLMMDESIIPRIEHYECMIELLGKHGCMVELEDFVEHMP----FEPTTAMWLRI 660

Query: 376 LAAC 379
              C
Sbjct: 661 FDCC 664



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 1/179 (0%)

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
           T  +N  I  +A  G + DA  +   MP  +  SWN+I+T         EAL LF  M S
Sbjct: 85  TFLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNS 144

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             +   + T +++LS  A    L     +H  + K+   +++++ +AL+D+Y  C  +  
Sbjct: 145 LGIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLAD 204

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           A   F  +   N ++WN ++  Y   G     +++F ++ +   ++P   T  + + AC
Sbjct: 205 ARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSA-GVRPLGYTVSHAVLAC 262


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 159/516 (30%), Positives = 285/516 (55%), Gaps = 26/516 (5%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q++H  ++K GF  +V+V   L+  Y KI  +  A K+F E+P   +VSWNS++SGY   
Sbjct: 144 QKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQID 203

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G    +L  F E+ R    AD +   SAL AC     L+ GM IH ++++  LE  +++ 
Sbjct: 204 GDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQ 263

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA--------------------ASAR 182
             LIDMYGKCG V+ A  VF  +  K+I++WN++I                     + ++
Sbjct: 264 TSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDKVIPDVITMINLLPSCSQ 323

Query: 183 NGNL---ELAFGF-LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
           +G L   +   GF + ++  P  +    +++   + G+++ A  + + M   N  SWN++
Sbjct: 324 SGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTM 383

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           +  YV   +  EAL +F  + ++ +  D  T +++L  +A L++ + G  IHS ++K GL
Sbjct: 384 VAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGL 443

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
            ++  +++A++ MY+KCG ++ A   F  +  K++V+WN MI  YA +G     I+ F +
Sbjct: 444 GSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSE 503

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           ++  +  +P+  TF+++L ACS + +  D+   +F SM  +YGI P +EH   M+ L+G+
Sbjct: 504 MRG-KGFKPNGSTFVSLLTACSISGL-IDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGR 561

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G +  A+  I E+       +W +LL+AS   +D+ +A ++A  ++ L+ D+   YV+L
Sbjct: 562 NGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLL 621

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
            N+Y   G W+    ++  M+E+GL K  GCS +++
Sbjct: 622 SNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDI 657



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 113/459 (24%), Positives = 199/459 (43%), Gaps = 98/459 (21%)

Query: 39  FVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS 98
           FV + LMG         +A  MF ++       WN +I GY  +G +++A++ +  +E  
Sbjct: 68  FVESGLMG---------NALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECE 118

Query: 99  EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
            I +D ++F   + ACG+L +L +G  +H K++K   +  V + N LIDMY K G +E A
Sbjct: 119 GIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELA 178

Query: 159 IGVFGEMIDKDIISWNSVIAASA----------------RNGNLELAFGFLHRLP----- 197
             VF EM  +D++SWNS+++                   R GN    FG +  L      
Sbjct: 179 EKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIE 238

Query: 198 ------------------NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
                               D +    +I+   + G ++ A  + + + S N  +WN+++
Sbjct: 239 HCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMI 298

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            G    ++V              +P D  T   +L   +   AL  G  IH   I++   
Sbjct: 299 GGMQEDDKV--------------IP-DVITMINLLPSCSQSGALLEGKSIHGFAIRKMFL 343

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
             +V+ +AL+DMY KCG++++A+ +F  +  KN+V+WN M+  Y +N    + +++F+ +
Sbjct: 344 PYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHI 403

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
                L+PD++T  +VL A +                                   +  +
Sbjct: 404 LN-EPLKPDAITIASVLPAVAE----------------------------------LASR 428

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
            E  +    I +LG GS   +  A++     C DL  AR
Sbjct: 429 SEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAR 467



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 133/289 (46%), Gaps = 41/289 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   + +LL + S  G     + +H + ++  FL  + + TAL+  Y K   L  A  +
Sbjct: 309 PDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHV 368

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ + ++VSWN++++ YVQ+ +Y++AL +F  +    +  DA +  S L A  +L S 
Sbjct: 369 FNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASR 428

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IHS I+K  L     I+N ++ MY KCG ++ A   F  M+ KD++SWN++I A 
Sbjct: 429 SEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAY 488

Query: 181 ARNGNLELAFGFLHRL------PN----------------------------------PD 200
           A +G    +  F   +      PN                                  P 
Sbjct: 489 AIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPG 548

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMP-SPNSSSWNSILTGYVNRNRV 248
              Y  +++ + + G++++A   +  MP  P +  W S+L    N N V
Sbjct: 549 IEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDV 597



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 126/252 (50%), Gaps = 4/252 (1%)

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           L  P+ ++    + G  + G + +A+ +   M   ++  WN I+ GY N     EA+  +
Sbjct: 53  LARPNDLNITRDLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFY 112

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
             M+ + +  D +TF  ++     L AL  G  +H  +IK G D  + V + L+DMY K 
Sbjct: 113 YRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKI 172

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G +E+A+ +F  +  ++LV+WN+M++GY  +GD    +  F+++  + + + D    ++ 
Sbjct: 173 GFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGN-KADRFGMISA 231

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L ACS        +  + + +  +  +   V+   S+I + G+ G+V  A+R+   + + 
Sbjct: 232 LGACSIEHCLRSGMEIHCQVIRSELELDIMVQ--TSLIDMYGKCGKVDYAERVFNRI-YS 288

Query: 436 SYGVVWRALLSA 447
              V W A++  
Sbjct: 289 KNIVAWNAMIGG 300



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 7/225 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  +L A ++L   +  +Q+H YI+K G  SN F+S A++  Y K   L  A + 
Sbjct: 410 PDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREF 469

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VVSWN++I  Y   G  R ++  F E+       +  +F S L AC   G +
Sbjct: 470 FDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLI 529

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G    +S  V+Y ++ G+    C++D+ G+ G++++A     EM +      W S++A
Sbjct: 530 DEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLA 589

Query: 179 ASARNGN----LELAFGFLHRLPNPDTISYNEVINGIAQFGDIED 219
           AS RN N     ELA   +  L + +T  Y  + N  A+ G  ED
Sbjct: 590 AS-RNHNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEAGRWED 633


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 170/554 (30%), Positives = 298/554 (53%), Gaps = 44/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++YVL  +L A S LG+    +Q+H Y+L+S    +V     L+ FY K   +     +
Sbjct: 241 PDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKAL 300

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   +++SW ++I+GY+Q+    +A+ L  E+ R     D Y+ +S L +CG + +L
Sbjct: 301 FDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDAL 360

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           Q G  IHS ++K  LE    + N LIDMY KC +++DA  VF  +    ++ +N++I   
Sbjct: 361 QHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGY 420

Query: 181 ARNGNLELAFGFLHRLP----NPDTISY---------------NEVING-IAQFGD---- 216
           +R G L  A      +     +P  +++               ++ I+G I ++G     
Sbjct: 421 SRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDK 480

Query: 217 ---------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ-S 260
                          I DA  +     + +   WNS+ +GY  + +  EA  L+ ++Q S
Sbjct: 481 FTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLS 540

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           ++ P +E+TF+ + +  + L++L  G   H+ V+K GL++   + +AL+DMY+KCG VE 
Sbjct: 541 RERP-NEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEE 599

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A+ +F S   K+   WN+MI+ YA++G + + + +FE + +  ++ P+ VTF++VL+ACS
Sbjct: 600 AEKIFSSSVWKDTACWNSMISMYAQHGKVEEALRMFETMVS-NNINPNYVTFVSVLSACS 658

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H     D + +++ SM + YGI+P +EH  S++ L+G+ G +  A+  I ++      +V
Sbjct: 659 HVGFVEDGL-QHYNSMAR-YGIEPGIEHYASVVTLLGRAGRLTEAREFIEKMTIRPAALV 716

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           WR+LLSA     ++++A+ +A   I ++      YVML N++ S G W     +R  M  
Sbjct: 717 WRSLLSACRVFGNVELAKHAAEMAISIDPMDSGSYVMLSNIFASKGMWGDVKRLRLKMDV 776

Query: 501 RGLRKEAGCSWIEV 514
            G+ KE G SWIEV
Sbjct: 777 NGVVKEPGQSWIEV 790



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 194/393 (49%), Gaps = 41/393 (10%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           Y +++HC ++  G   +VF+S  L+  Y KI S+ DA  +F ++P  ++VSW+S++S Y 
Sbjct: 58  YYRKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYT 117

Query: 81  QSGKYRKALNLFVELERSEI-YADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
           Q G   KAL  F+E +R+ +   + Y   S + AC Q    + G  +HS ++K      V
Sbjct: 118 QLGYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDV 177

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            +   L+ +Y K G ++ A  VF  ++ K  ++W ++I    ++G  E++    + +   
Sbjct: 178 YVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMES 237

Query: 200 DTI---------------------------------------SYNEVINGIAQFGDIEDA 220
           + I                                       +YN +I+   + G ++  
Sbjct: 238 NVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAG 297

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             +   +   N  SW +++ GY+  +   EA+ L GEM       DEY  S++L+    +
Sbjct: 298 KALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSV 357

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
            AL  G  IHS VIK  L+    V +AL+DMYSKC  ++ A  +F  +   ++V +NAMI
Sbjct: 358 DALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMI 417

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
            GY+R G L   +E+F++++ ++ + P  +TF+
Sbjct: 418 EGYSRQGYLCGALEVFQEMR-LKHVSPSFLTFV 449



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 139/520 (26%), Positives = 232/520 (44%), Gaps = 71/520 (13%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NEY+L  ++RA           Q+H Y++KSGF  +V+V T+L+  Y K   +  A  +F
Sbjct: 141 NEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVF 200

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +   + V+W ++I+GY +SG+   +L LF  +  S +  D Y  +S L AC  LG L+
Sbjct: 201 DGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLK 260

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  IH+ +++   +  V   N LID Y KCG V+    +F  +  K+IISW ++IA   
Sbjct: 261 GGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYM 320

Query: 182 RNG----NLELAFGFLHRL---PNP---------------------------------DT 201
           +N      +EL  G + R+   P+                                  D 
Sbjct: 321 QNSYDWEAVELV-GEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDN 379

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+  ++   ++DA  +   +   +   +N+++ GY  +  +  AL +F EM+ K
Sbjct: 380 FVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLK 439

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V     TF ++L   A L  L     IH  +IK G       +SAL+D+YSKC  +  A
Sbjct: 440 HVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDA 499

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF------LNV 375
             +F     K++V WN++ +GY       +  +L+  L+  R+ +P+  TF       ++
Sbjct: 500 RYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRE-RPNEFTFAALTTAASI 558

Query: 376 LAACSHTDIPFDKV------SEYF--ESMTKDYGIKPTVEH-------------CC--SM 412
           LA+  H     ++V      S+ F   ++   Y    +VE               C  SM
Sbjct: 559 LASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNSM 618

Query: 413 IRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
           I +  Q G+V  A RM   +   +    +   +S   ACS
Sbjct: 619 ISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSACS 658



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 87/201 (43%), Gaps = 7/201 (3%)

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
           P    +     S++V +     + +L       ++ +   +H  V+  GL   + +++ L
Sbjct: 22  PNVQPMLPSFSSQNVKVKGRALANLLLAPVSNKSILYYRKVHCQVVLWGLQYDVFLSNLL 81

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           L  Y K G V  A ++F  +  +NLV+W+++++ Y + G   K +  F + +     + +
Sbjct: 82  LHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLN 141

Query: 369 SVTFLNVLAACSHTD--IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426
                +++ AC   D   P  +V  Y        G    V    S++ L  + GE+ +A+
Sbjct: 142 EYILASIIRACVQRDGGEPGSQVHSY----VIKSGFGEDVYVGTSLVVLYAKHGEIDKAR 197

Query: 427 RMIRELGFGSYGVVWRALLSA 447
            +   L   +  V W A+++ 
Sbjct: 198 LVFDGLVLKT-PVTWTAIITG 217


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 168/532 (31%), Positives = 271/532 (50%), Gaps = 41/532 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           ++ H  ++K GF+S+  + TAL+  Y K  S+  A ++F  + +  V ++N +I GY +S
Sbjct: 182 KEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKS 241

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   KA  LF  +++     +  SF S L  C    +L  G A+H++ +   L   V +A
Sbjct: 242 GDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVA 301

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
             LI MY  CGS+E A  VF +M  +D++SW  +I   A N N+E AFG    +      
Sbjct: 302 TALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQ 361

Query: 199 PDTISYNEVINGI-----------------------------------AQFGDIEDAIMI 223
           PD I+Y  +IN                                     A+ G I+DA  +
Sbjct: 362 PDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQV 421

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
             +M   +  SW++++  YV      EA   F  M+  +V  D  T+  +L+    L AL
Sbjct: 422 FDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGAL 481

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             GM I++  IK  L + I V +AL++M  K G +E A  +F ++ ++++VTWN MI GY
Sbjct: 482 DLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGY 541

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           + +G+  + ++LF+++   R  +P+SVTF+ VL+ACS      ++   +F  +    GI 
Sbjct: 542 SLHGNAREALDLFDRMLKER-FRPNSVTFVGVLSACSRAGF-VEEGRRFFSYLLDGRGIV 599

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           PT+E    M+ L+G+ GE+  A+ +I  +       +W  LL+A     +LDVA  +A  
Sbjct: 600 PTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAER 659

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
            +  E     VYV L ++Y + G W+  + +R  M  RG+RKE GC+WIEVE
Sbjct: 660 CLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVE 711



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 196/398 (49%), Gaps = 40/398 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+  +I++SG   N++    L+  +    ++ +A + F  +   +VV+WN++I+GY Q 
Sbjct: 81  KQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQL 140

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G  ++A  LF ++    +     +F   L AC     L+LG   H++++K        I 
Sbjct: 141 GHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIG 200

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
             L+ MY K GS++ A  VF  +  +D+ ++N +I   A++G+ E AF   +R+      
Sbjct: 201 TALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFK 260

Query: 199 PDTISYNEVINGIAQ-----------------------------------FGDIEDAIMI 223
           P+ IS+  +++G +                                     G IE A  +
Sbjct: 261 PNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRV 320

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              M   +  SW  ++ GY   + + +A  LF  MQ + +  D  T+  +++  A  + L
Sbjct: 321 FDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADL 380

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
           +    IHS V++ G    ++V +AL+ MY+KCG ++ A  +F ++ R+++V+W+AMI  Y
Sbjct: 381 SLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAY 440

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             NG   +  E F  +K   +++PD VT++N+L AC H
Sbjct: 441 VENGCGEEAFETFHLMKR-NNVEPDVVTYINLLNACGH 477



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 169/390 (43%), Gaps = 41/390 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      +L   S      + + +H   + +G + +V V+TAL+  Y    S+  A ++
Sbjct: 261 PNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRV 320

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++    VVSW  +I GY ++     A  LF  ++   I  D  ++   + AC     L
Sbjct: 321 FDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADL 380

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            L   IHS++V+      +++   L+ MY KCG+++DA  VF  M  +D++SW+++I A 
Sbjct: 381 SLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAY 440

Query: 181 ARNGNLELAFGFLHRLPN----PDTISY-------------------------------- 204
             NG  E AF   H +      PD ++Y                                
Sbjct: 441 VENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHI 500

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +IN   + G IE A  I  +M   +  +WN ++ GY       EAL LF  M  +
Sbjct: 501 PVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKE 560

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-QGLDASIVVASALLDMYSKCGQVEI 320
               +  TF  +LS  +    +  G    S ++  +G+  ++ +   ++D+  + G+++ 
Sbjct: 561 RFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDE 620

Query: 321 ADSMF-RSLCRKNLVTWNAMITGYARNGDL 349
           A+ +  R   + N   W+ ++      G+L
Sbjct: 621 AELLINRMPLKPNSSIWSTLLAACRIYGNL 650



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 160/355 (45%), Gaps = 47/355 (13%)

Query: 72  WNSLISGYVQSGKYRK-------ALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
           W   +   VQS + R        A ++   L     + D+ ++      C  L    LG 
Sbjct: 22  WCGFLQQPVQSARCRSIFTGQVGANDVLHRLGEGSNHIDSRTYVKLFQRCMMLRDAGLGK 81

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
            +   I++   +  +   N LI ++  CG++ +A   F  + +K +++WN++IA  A+ G
Sbjct: 82  QVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLG 141

Query: 185 NLELAFGFLHRLPN----PDTISYNEVING----------------------IAQF---- 214
           +++ AF    ++ +    P  I++  V++                       ++ F    
Sbjct: 142 HVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGT 201

Query: 215 ---------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
                    G ++ A  +   +   + S++N ++ GY       +A  LF  MQ +    
Sbjct: 202 ALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKP 261

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           +  +F ++L G +   AL WG  +H+  +  GL   + VA+AL+ MY  CG +E A  +F
Sbjct: 262 NRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVF 321

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             +  +++V+W  MI GYA N ++     LF  ++    +QPD +T+++++ AC+
Sbjct: 322 DKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQE-EGIQPDRITYIHIINACA 375


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 155/538 (28%), Positives = 291/538 (54%), Gaps = 45/538 (8%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           + +Q+HC ++K G  ++ +V T+L+  Y K   + +A  +F  +    +  WN++++ Y 
Sbjct: 290 FGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYA 349

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           ++     AL+LF  + +  +  D+++ ++ ++ C  LG    G ++H+++ K  ++    
Sbjct: 350 ENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTST 409

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-- 198
           I + L+ +Y KCG   DA  VF  M +KD+++W S+I+   +NG  + A      + +  
Sbjct: 410 IESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDD 469

Query: 199 ----PDTISYNEVINGIA-----QFG-----------------------DI-------ED 219
               PD+     V N  A     +FG                       D+       E 
Sbjct: 470 DSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEM 529

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPE-ALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
           A+ + +SM + N  +WNS+++ Y +RN +PE ++ LF  M S+ +  D  + +++L  I+
Sbjct: 530 ALKVFTSMSTENMVAWNSMISCY-SRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAIS 588

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
             ++L  G  +H   ++ G+ +   + +AL+DMY KCG  + A+++F+ +  K+L+TWN 
Sbjct: 589 STASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNL 648

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           MI GY  +GD    + LF+++K   +  PD VTFL++++AC+H+    ++    FE M +
Sbjct: 649 MIYGYGSHGDCITALSLFDEMKKAGE-SPDDVTFLSLISACNHSGF-VEEGKNIFEFMKQ 706

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           DYGI+P +EH  +M+ L+G+ G +  A   I+ +   +   +W  LLSAS    ++++  
Sbjct: 707 DYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGI 766

Query: 459 ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +SA +++++E +    YV L NLY   G  + A+ +   M+E+GL K+ GCSWIEV +
Sbjct: 767 LSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVSD 824



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 152/523 (29%), Positives = 257/523 (49%), Gaps = 51/523 (9%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS-VVSWNSLISGYVQ 81
           +Q+H ++L++   ++ F+ TAL+  Y K     DA ++FVEI   S VV WN +I G+  
Sbjct: 190 KQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGG 249

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           SG    +L+L++  + + +   + SFT AL AC Q  +   G  IH  +VK  L     +
Sbjct: 250 SGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYV 309

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN----GNLELAFGFLHRLP 197
              L+ MY KCG V +A  VF  ++DK +  WN+++AA A N      L+L FGF+ +  
Sbjct: 310 CTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDL-FGFMRQKS 368

Query: 198 N-PDTISYNEVIN-----GIAQFGD----------------IE--------------DAI 221
             PD+ + + VI+     G+  +G                 IE              DA 
Sbjct: 369 VLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAY 428

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD--VPMDEYTFSTMLSGIAG 279
           ++  SM   +  +W S+++G     +  EAL +FG+M+  D  +  D    +++ +  AG
Sbjct: 429 LVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAG 488

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
           L AL +G+ +H  +IK GL  ++ V S+L+D+YSKCG  E+A  +F S+  +N+V WN+M
Sbjct: 489 LEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSM 548

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKD 399
           I+ Y+RN      I+LF  L   + + PDSV+  +VL A S T       S      T  
Sbjct: 549 ISCYSRNNLPELSIDLF-NLMLSQGIFPDSVSITSVLVAISSTASLLKGKS--LHGYTLR 605

Query: 400 YGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARI 459
            GI        ++I +  + G    A+ + +++   S  + W  ++   G+  D  +  +
Sbjct: 606 LGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSL-ITWNLMIYGYGSHGDC-ITAL 663

Query: 460 SAAEVIKLEGDS--DYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           S  + +K  G+S  D  ++ L +     G  +    +  FM++
Sbjct: 664 SLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQ 706



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 199/422 (47%), Gaps = 50/422 (11%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           LL+A S L   +Y + +H  ++  G+  + F++T+L+  Y K   L  A ++F    Q  
Sbjct: 66  LLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQ 125

Query: 69  -------VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL- 120
                  V  WNS+I GY +  ++++ +  F  +    +  DA+S +  ++   + G+  
Sbjct: 126 SGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFR 185

Query: 121 -QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIA 178
            + G  IH  +++ SL+    +   LIDMY K G   DA  VF E+ DK +++ WN +I 
Sbjct: 186 REEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIV 245

Query: 179 AS---------------ARNGNLEL-------AFGFLHRLPNP----------------- 199
                            A+N +++L       A G   +  N                  
Sbjct: 246 GFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHN 305

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           D      +++  ++ G + +A  + S +       WN+++  Y   +    AL LFG M+
Sbjct: 306 DPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMR 365

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            K V  D +T S ++S  + L    +G  +H+ + K+ + ++  + SALL +YSKCG   
Sbjct: 366 QKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDP 425

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAA 378
            A  +F+S+  K++V W ++I+G  +NG   + +++F  +K   D L+PDS    +V  A
Sbjct: 426 DAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNA 485

Query: 379 CS 380
           C+
Sbjct: 486 CA 487



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 157/363 (43%), Gaps = 51/363 (14%)

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELE-RSEIYADAYSFTSALAACGQLGSLQLGMAI 126
           S  S NS I   +Q G+Y +AL+L+ + +  S  +   ++F S L AC  L +L  G  I
Sbjct: 23  SPASINSGIRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTI 82

Query: 127 HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF-------GEMIDKDIISWNSVIAA 179
           H  +V         IA  L++MY KCG ++ A+ VF         +  +D+  WNS+I  
Sbjct: 83  HGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDG 142

Query: 180 SARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIE-------DAIMILSSMP 228
             +    +   G   R+      PD  S + V++ + + G+            M+ +S+ 
Sbjct: 143 YFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLD 202

Query: 229 S-------------------------------PNSSSWNSILTGYVNRNRVPEALHLFGE 257
           +                                N   WN ++ G+        +L L+  
Sbjct: 203 TDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYML 262

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
            ++  V +   +F+  L   +      +G  IH  V+K GL     V ++LL MYSKCG 
Sbjct: 263 AKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGM 322

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           V  A+++F  +  K L  WNAM+  YA N      ++LF  ++  + + PDS T  NV++
Sbjct: 323 VGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQ-KSVLPDSFTLSNVIS 381

Query: 378 ACS 380
            CS
Sbjct: 382 CCS 384



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 114/231 (49%), Gaps = 4/231 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+  ++  +  A + L    +  Q+H  ++K+G + NVFV ++L+  Y K      A K+
Sbjct: 474 PDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKV 533

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   ++V+WNS+IS Y ++     +++LF  +    I+ D+ S TS L A     SL
Sbjct: 534 FTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASL 593

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G ++H   ++  +     + N LIDMY KCG  + A  +F +M  K +I+WN +I   
Sbjct: 594 LKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGY 653

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSM 227
             +G+   A      +     +PD +++  +I+     G +E+   I   M
Sbjct: 654 GSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFM 704



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 115/248 (46%), Gaps = 15/248 (6%)

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQ-SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
           +S NS +   + +    +ALHL+ +   S       +TF ++L   + L+ L++G  IH 
Sbjct: 25  ASINSGIRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTIHG 84

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMF-------RSLCRKNLVTWNAMITGYA 344
            V+  G      +A++L++MY KCG ++ A  +F         +  +++  WN+MI GY 
Sbjct: 85  SVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYF 144

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA-CSHTDIPFDKVSEYFESMTKDYGIK 403
           +     + +  F ++  V  ++PD+ +   V++  C   +   ++  +    M ++  + 
Sbjct: 145 KFRRFKEGVGCFRRM-LVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRN-SLD 202

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL---SASGAC-SDLDVARI 459
                  ++I +  + G    A R+  E+   S  V+W  ++     SG C S LD+  +
Sbjct: 203 TDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYML 262

Query: 460 SAAEVIKL 467
           +    +KL
Sbjct: 263 AKNNSVKL 270


>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
 gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
          Length = 1029

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 168/557 (30%), Positives = 287/557 (51%), Gaps = 44/557 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +++    +L A  +L      +Q+HC  +K+   +++FV+ A++  Y K+ ++  A  +F
Sbjct: 427 DDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALF 486

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             IP    VSWN+LI G   + +  +A+ +   ++   I  D  SF +A+ AC  + + +
Sbjct: 487 SLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATE 546

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  IH   +KY++     + + LID+Y K G VE +  V   +    ++  N++I    
Sbjct: 547 TGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGLV 606

Query: 182 RNGNLELAFGFLHRLP----NPDTISYNEVIN---------------------------- 209
           +N   + A     ++      P   ++  +++                            
Sbjct: 607 QNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVIGKQVHSYTLKSALLNQDT 666

Query: 210 --GIAQFGD------IEDAIMILSSMPS-PNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
             GI+  G       +EDA  +L+ +P   N   W + ++GY       ++L +F  M+S
Sbjct: 667 SLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQSLVMFWRMRS 726

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            DV  DE TF+++L   + ++ALT G  IH  +IK G  +    ASAL+DMYSKCG V  
Sbjct: 727 HDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFVSYETAASALMDMYSKCGDVIS 786

Query: 321 ADSMFRSLCRK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           +  +F+ L  K N++ WN+MI G+A+NG   + + LF++++  + L+PD VT L VL AC
Sbjct: 787 SFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQ-LKPDEVTLLGVLIAC 845

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH  +   +    F+SM++ YGI P V+H   +I L+G+ G +  AQ +I +L F + GV
Sbjct: 846 SHAGL-ISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQEAQEVIDQLPFRADGV 904

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W   L+A     D +  +++A +++++E      YV L +L+ + GNW  A V R  MR
Sbjct: 905 IWATFLAACQMHKDEERGKVAAKKLVEMEPQRSSTYVFLSSLHAAAGNWVEAKVAREAMR 964

Query: 500 ERGLRKEAGCSWIEVEN 516
           E+G+ K  GCSWI V N
Sbjct: 965 EKGVMKFPGCSWITVGN 981



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 220/438 (50%), Gaps = 17/438 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++ L  +L A S LG     +Q+HC +LKSGF S+ F    L+  Y K   + DA ++
Sbjct: 158 PDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFCQAGLVDMYAKCVEVKDARRV 217

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I  P  + W S+I+GY + G+Y++AL LF  +E+     D  ++ + ++    +G L
Sbjct: 218 FDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVTIISTLASMGRL 277

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII----SWNSV 176
                +  +I   S     V  N +I  Y + G   +  G++ +M  + ++    ++ S+
Sbjct: 278 SDARTLLKRIQMPS----TVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASM 333

Query: 177 IAASAR-----NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
           ++A+A       G    A    H L + +    + +IN   + G I DA  +       N
Sbjct: 334 LSAAASMTAFDEGQQIHAAAVKHGL-DANVFVGSSLINLYVKHGCISDAKKVFDFSTEKN 392

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              WN++L G+V  +   E + +F  M+  D+  D++TF ++L     L +L  G  +H 
Sbjct: 393 IVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVHC 452

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
             IK  +DA + VA+A+LDMYSK G +++A ++F  +  K+ V+WNA+I G A N +  +
Sbjct: 453 ITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEE 512

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411
            + + +++K    + PD V+F   + ACS  +I   +  +     +  Y +        S
Sbjct: 513 AVYMLKRMKCY-GIAPDEVSFATAINACS--NIRATETGKQIHCASIKYNVCSNHAVGSS 569

Query: 412 MIRLMGQKGEVWRAQRMI 429
           +I L  + G+V  +++++
Sbjct: 570 LIDLYSKFGDVESSRKVL 587



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 187/370 (50%), Gaps = 10/370 (2%)

Query: 22  CQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF--VEIPQPSVVSWNSLISGY 79
           C  LH  +L+ G      +  AL+  Y +   +  A +          S  + +S++S +
Sbjct: 75  CGVLHARVLRLGLPLRGRLGDALVDLYGRSGRVGYAWRALGCCTGAPASGAAASSVLSCH 134

Query: 80  VQSGKYRKALNLFVELERSEI--YADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER 137
            +SG  R  L+ F  L R  I    D +     L+AC +LG+L+ G  +H  ++K     
Sbjct: 135 ARSGSPRDVLDAFQRL-RCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCS 193

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
                  L+DMY KC  V+DA  VF  +   D I W S+IA   R G  + A     R+ 
Sbjct: 194 SAFCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRME 253

Query: 198 N----PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
                PD ++Y  +I+ +A  G + DA  +L  +  P++ +WN++++ Y       E   
Sbjct: 254 KMGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFG 313

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
           L+ +M+ + +     TF++MLS  A ++A   G  IH+  +K GLDA++ V S+L+++Y 
Sbjct: 314 LYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYV 373

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           K G +  A  +F     KN+V WNAM+ G+ +N    + I++F+ ++   DL+ D  TF+
Sbjct: 374 KHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRA-DLEADDFTFV 432

Query: 374 NVLAACSHTD 383
           +VL AC + D
Sbjct: 433 SVLGACINLD 442



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 180/370 (48%), Gaps = 42/370 (11%)

Query: 51  INSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSA 110
           +  L+DA  +   I  PS V+WN++IS Y QSG   +   L+ +++R  +     +F S 
Sbjct: 274 MGRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASM 333

Query: 111 LAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI 170
           L+A   + +   G  IH+  VK+ L+  V + + LI++Y K G + DA  VF    +K+I
Sbjct: 334 LSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNI 393

Query: 171 ISWNSVIAASARNGNLELA---FGFLHRLP------------------------------ 197
           + WN+++    +N   E     F ++ R                                
Sbjct: 394 VMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCI 453

Query: 198 ------NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEA 251
                 + D    N +++  ++ G I+ A  + S +P  +S SWN+++ G  +     EA
Sbjct: 454 TIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEA 513

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           +++   M+   +  DE +F+T ++  + + A   G  IH   IK  + ++  V S+L+D+
Sbjct: 514 VYMLKRMKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDL 573

Query: 312 YSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPDSV 370
           YSK G VE +  +   +   ++V  NA+ITG  +N    + IELF+Q+  ++D  +P + 
Sbjct: 574 YSKFGDVESSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQV--LKDGFKPSNF 631

Query: 371 TFLNVLAACS 380
           TF ++L+ C+
Sbjct: 632 TFASILSGCT 641



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/424 (21%), Positives = 178/424 (41%), Gaps = 44/424 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E      + A S++      +Q+HC  +K    SN  V ++L+  Y K   +  + K+
Sbjct: 527 PDEVSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKV 586

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
              +   S+V  N+LI+G VQ+ +  +A+ LF ++ +       ++F S L+ C    S 
Sbjct: 587 LAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSS 646

Query: 121 QLGMAIHSKIVKYS-LERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIA 178
            +G  +HS  +K + L +   +   L+ +Y KC  +EDA  +  E+ D K+++ W + I+
Sbjct: 647 VIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATIS 706

Query: 179 ASARNGNLELAFGFLHRLPNPDT-----------------------------------IS 203
             A+NG  + +     R+ + D                                    +S
Sbjct: 707 GYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFVS 766

Query: 204 YNEVINGI----AQFGDIEDAIMILSSMPSP-NSSSWNSILTGYVNRNRVPEALHLFGEM 258
           Y    + +    ++ GD+  +  I   + +  N   WNS++ G+       EAL LF +M
Sbjct: 767 YETAASALMDMYSKCGDVISSFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQKM 826

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           Q   +  DE T   +L   +    ++ G  L  S     G+   +   + L+D+  + G 
Sbjct: 827 QESQLKPDEVTLLGVLIACSHAGLISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGRGGH 886

Query: 318 VEIADSMFRSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           ++ A  +   L  R + V W   +     + D  +     ++L  +   +  +  FL+ L
Sbjct: 887 LQEAQEVIDQLPFRADGVIWATFLAACQMHKDEERGKVAAKKLVEMEPQRSSTYVFLSSL 946

Query: 377 AACS 380
            A +
Sbjct: 947 HAAA 950


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 163/519 (31%), Positives = 267/519 (51%), Gaps = 35/519 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      L++A + L + +Y   +  ++ K GF ++VFV  A M F+     +A A ++
Sbjct: 119 PDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRL 178

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL--ERSEIYADAYSFTSALAACGQLG 118
           F E P   VVSWN+LI GYV+SG  R+AL LF  L  + + +  D  +   A++ C Q+G
Sbjct: 179 FDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMG 238

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            L+LG  +H  +    +   V + N ++DMY KCGS                        
Sbjct: 239 DLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGS------------------------ 274

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
                  LELA     R+ N   +S+  +I G A+ G +EDA M+   MP  +   WN++
Sbjct: 275 -------LELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNAL 327

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           + GYV   +  EA+ LF EMQ   V  +E T   +LS  + L AL  GM +H  + +  L
Sbjct: 328 MAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKL 387

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
             S+ + ++L+DMY+KCG ++ A  +F  +  +N +TW +MI G A +G   + IE F++
Sbjct: 388 HLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQR 447

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           +  +  LQPD +TF+ VL+AC H  +  +   ++F  M   Y ++  ++H   MI L+G+
Sbjct: 448 MIDL-GLQPDEITFIGVLSACCHAGL-VEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGR 505

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G +  A++++  +      VVW AL  A     ++ +   +A ++++L+     +YV+L
Sbjct: 506 AGHLDEAEQLVNAMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLL 565

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
            N+Y        A  +R  MR  G+ K  GCS IE+  V
Sbjct: 566 ANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGV 604


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 154/484 (31%), Positives = 267/484 (55%), Gaps = 13/484 (2%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL 95
            NV   TA++G Y + N ++DA K+F E+P  +VVSWN++I GY Q+G+   A+ LF ++
Sbjct: 113 KNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKM 172

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
               + +   +  S LA CG++   +       ++     ER V+    +I    K G +
Sbjct: 173 PERNVVS-WNTVMSMLAQCGRIEEAR-------RLFDRMPERDVISWTAMIAGLSKNGRI 224

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFG 215
           ++A  +F  M +++++SWN++I   A+N  L+ A     R+P  D  S+N +I G+ Q G
Sbjct: 225 DEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNG 284

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD-VPMDEYTFSTML 274
           D+  A  + + MP  N  SW +++TG V      EAL +F  M S +    ++ TF ++L
Sbjct: 285 DLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVL 344

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS--LCRKN 332
              + L+ L  G  +H  + K     S  V SAL++MYSKCG++  A  MF      +++
Sbjct: 345 GACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRD 404

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           LV+WN +I  YA +G   + I  F++++     +PD VT++ +L+ACSH  +  ++  +Y
Sbjct: 405 LVSWNGIIAAYAHHGYGKEAINFFKEMRK-SGFKPDDVTYVGLLSACSHAGL-VEEGLKY 462

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
           F+ + KD  I    +H   ++ L G+ G +  A   I  L       VW ALL+     +
Sbjct: 463 FDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHA 522

Query: 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           ++ + + +A +++++E ++   Y++L N+Y S G W  A+ +R  M+++GL+K+ GCSWI
Sbjct: 523 NVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWI 582

Query: 513 EVEN 516
           EV N
Sbjct: 583 EVGN 586



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 181/371 (48%), Gaps = 31/371 (8%)

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF 192
           ++++  V   N +I    K G + +A  +F EM + D+I+W +VI+   + G +E A   
Sbjct: 46  FTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRL 105

Query: 193 LHRL-PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEA 251
             R+    + +++  ++ G  +   I DA  + + MP+ N  SWN+++ GY    R+  A
Sbjct: 106 FDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSA 165

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           ++LF +M  ++V     +++T++S +A    +     +   + ++     ++  +A++  
Sbjct: 166 MYLFEKMPERNV----VSWNTVMSMLAQCGRIEEARRLFDRMPER----DVISWTAMIAG 217

Query: 312 YSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371
            SK G+++ A  +F  +  +N+V+WNAMITGYA+N  L + ++LFE++   RDL P   T
Sbjct: 218 LSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPE-RDL-PSWNT 275

Query: 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI-R 430
            +  L    + D+   +  + F  M K   I  T     +MI    Q+GE   A ++  R
Sbjct: 276 MITGL--IQNGDL--RRARKLFNEMPKKNVISWT-----TMITGCVQEGESEEALKIFSR 326

Query: 431 ELGFGSYGVVWRALLSASGACSDL-------DVARISAAEVIKLEGDSDYVYVMLCNLYT 483
            L            +S  GACS+L        V +I +  V +   DS +V   L N+Y+
Sbjct: 327 MLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQ---DSTFVVSALINMYS 383

Query: 484 SHGNWDVASVM 494
             G    A  M
Sbjct: 384 KCGELGTARKM 394



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 99/196 (50%), Gaps = 10/196 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+     +L A S+L      QQ+H  I K+ +  + FV +AL+  Y K   L  A KM
Sbjct: 335 PNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKM 394

Query: 61  FVE--IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           F +    Q  +VSWN +I+ Y   G  ++A+N F E+ +S    D  ++   L+AC   G
Sbjct: 395 FDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAG 454

Query: 119 SLQLGMAIHSKIVKYSLERGVVIAN----CLIDMYGKCGSVEDAIGVFGEMIDKDIIS-W 173
            ++ G+    ++VK   +R +++      CL+D+ G+ G +++A G    +  K     W
Sbjct: 455 LVEEGLKYFDELVK---DRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVW 511

Query: 174 NSVIAASARNGNLELA 189
            +++A    + N+++ 
Sbjct: 512 GALLAGCNVHANVKIG 527


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 150/483 (31%), Positives = 267/483 (55%), Gaps = 8/483 (1%)

Query: 39  FVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS 98
           F   A++  Y K   + D   +F  +P    VS+N++ISG+  +G+   AL +F+ +++ 
Sbjct: 90  FSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKE 149

Query: 99  EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
            +    Y+  S L AC QL  L+ G  IH +I+  +L   V + N L D+Y +CG ++ A
Sbjct: 150 GLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQA 209

Query: 159 IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQF 214
             +F  M+ +++++WN +I+   +N   E      H +      PD ++ + V+    Q 
Sbjct: 210 RRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQA 269

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G I++A  +   +   +   W  ++ G     +  +AL LF EM  ++   D YT S+++
Sbjct: 270 GYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVV 329

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
           S  A L++L  G ++H      G++  ++V+SAL+DMY KCG    A ++F ++  +N+V
Sbjct: 330 SSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVV 389

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFE 394
           +WN+MI GYA NG   + + L+E +    +L+PDSVTF+ VL+AC H  +  ++  EYF 
Sbjct: 390 SWNSMIGGYALNGQDLEALSLYENMLE-ENLKPDSVTFVGVLSACVHAGL-VEEGKEYFC 447

Query: 395 SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDL 454
           SM+  +G++PT +H   M+ L G+ G + +A  +I  +      ++W  +LS      D+
Sbjct: 448 SMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDI 507

Query: 455 DVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW-DVASVMRNFMRERGLRKEAGCSWIE 513
               ++A  +I+L   +   Y+ML N+Y + G W DVAS+ R+ M+ + ++K +  SWIE
Sbjct: 508 KHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASI-RSLMKSKHVKKFSAYSWIE 566

Query: 514 VEN 516
           ++N
Sbjct: 567 IDN 569



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 124/238 (52%), Gaps = 32/238 (13%)

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           I N L+++Y K G +  A  +F EM  +D  SW                           
Sbjct: 60  IHNRLLNLYAKSGEISHARKLFDEMTQRDNFSW--------------------------- 92

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +++  A+ G +ED  +I  +MPS +S S+N++++G+    R   AL +F  MQ 
Sbjct: 93  ----NAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQK 148

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           + +   EYT  ++L+    L  L  G  IH  +I   L  ++ V +AL D+Y++CG+++ 
Sbjct: 149 EGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQ 208

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           A  +F  +  +N+VTWN MI+GY +N    K I+LF +++ V +L+PD VT  +VL A
Sbjct: 209 ARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQ-VSNLKPDQVTASSVLGA 265



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 171/360 (47%), Gaps = 16/360 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P EY    +L A + L      +Q+H  I+      NVFV  AL   Y +   +  A ++
Sbjct: 153 PTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRL 212

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   +VV+WN +ISGY+++ +  K ++LF E++ S +  D  + +S L A  Q G +
Sbjct: 213 FDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYI 272

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI----DKDIISWNSV 176
                +  +I     E+  V    +I    + G  EDA+ +F EM+      D  + +SV
Sbjct: 273 DEARKVFGEI----REKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSV 328

Query: 177 IAASAR-----NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
           +++ A+     +G +     FL  + N D +  + +++   + G   DA  I S+M + N
Sbjct: 329 VSSCAKLASLYHGQVVHGKAFLMGV-NDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRN 387

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SWNS++ GY    +  EAL L+  M  +++  D  TF  +LS       +  G     
Sbjct: 388 VVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFC 447

Query: 292 CVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK-NLVTWNAMITGYARNGDL 349
            +  Q GL+ +    + +++++ + G ++ A  +  S+ ++ N + W  +++     GD+
Sbjct: 448 SMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDI 507



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 116/242 (47%), Gaps = 5/242 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y +  ++ + + L    + Q +H      G   ++ VS+AL+  Y K     DA  +
Sbjct: 320 PDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTI 379

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   +VVSWNS+I GY  +G+  +AL+L+  +    +  D+ +F   L+AC   G +
Sbjct: 380 FSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLV 439

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G      +  ++ LE       C+++++G+ G ++ A+ +   M  + + + W +V++
Sbjct: 440 EEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLS 499

Query: 179 ASARNGNL---ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSW 235
                G++   E+A   L  L   + + Y  + N  A  G  +D   I S M S +   +
Sbjct: 500 VCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKF 559

Query: 236 NS 237
           ++
Sbjct: 560 SA 561


>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
 gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
          Length = 698

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 173/544 (31%), Positives = 276/544 (50%), Gaps = 47/544 (8%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QL  + +KSG + NVF ++AL+  Y K   L+DA ++F  +P  + VSWN+LI+GY +S 
Sbjct: 116 QLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDARRVFDGMPVRNTVSWNALIAGYAESR 175

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           K  +A+ LF+E++R E+  D  +F + LA         L   +H KI KY    G+V+ N
Sbjct: 176 KPAQAMELFLEMQRVELVPDDATFAALLATVEGPSWYSLMQQLHGKIAKYGSALGLVVLN 235

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL-----PN 198
             I  Y +CG+  D+  +F  +  +D+ISWNS++ A A +G  + A  F  R+       
Sbjct: 236 AAITAYSQCGAFADSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESGVQ 295

Query: 199 PDTISYNEVINGIAQFG---------------------------------------DIED 219
           PD  S+  V++  ++ G                                        +ED
Sbjct: 296 PDMYSFTSVVSVCSEHGCDDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYTRFTENCMMED 355

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
           A     S+   ++ SWNS+LTGY +     +AL  F  M++++V  DE+  S  L   + 
Sbjct: 356 AYKCFDSLVFKDAVSWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFALSAALRSCSD 415

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
           L+ L  G  +HS VI+ G  ++  V+S+L+ MYSKCG V  A   F    + + V WN+M
Sbjct: 416 LAVLRLGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFEEADKGSSVPWNSM 475

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKD 399
           + GYA++G    V +LF ++   + +  D VTF+ +L A SH  +  D+ SE   SM   
Sbjct: 476 MFGYAQHGQAQTVTDLFSEMLDHK-VPLDHVTFVALLTAYSHGGL-VDEGSEILNSMETR 533

Query: 400 YGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARI 459
           Y I   +EH    + L G+ G++ +A+ +I  + F    +VW  LL A     ++++A  
Sbjct: 534 YKIPLRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAMVWMTLLGACRIHGNMELASD 593

Query: 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAA 519
            A+ +   E      YV+L ++Y+  G W   + ++  M+ RGL K  G SWIEV+N   
Sbjct: 594 VASHLFVAEPRQHSTYVLLSSMYSGRGMWSDRATVQKVMKNRGLSKVPGWSWIEVKN-EV 652

Query: 520 HSSN 523
           HS N
Sbjct: 653 HSFN 656



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 214/495 (43%), Gaps = 49/495 (9%)

Query: 52  NSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSAL 111
           + LA A ++F EIP+P  VSWNSL++ +V +G +R A  L  ++    + A  ++  SAL
Sbjct: 43  SGLAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHARGLTASTFALGSAL 102

Query: 112 AACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII 171
            +       +LG  + S  VK  L   V  A+ L+D+Y KCG + DA  VF  M  ++ +
Sbjct: 103 RSAAAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDARRVFDGMPVRNTV 162

Query: 172 SWNSVIAASARNGNLELAFGFLHRLPN----PDTISY----------------------- 204
           SWN++IA  A +     A      +      PD  ++                       
Sbjct: 163 SWNALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLATVEGPSWYSLMQQLHGKI 222

Query: 205 ------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEAL 252
                       N  I   +Q G   D+  I   + S +  SWNS+L  Y       EA+
Sbjct: 223 AKYGSALGLVVLNAAITAYSQCGAFADSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEAM 282

Query: 253 HLFGE-MQSKDVPMDEYTFSTMLSGIAGLSA-LTWGMLIHSCVIKQGLDASIVVASALLD 310
             F   M+   V  D Y+F++++S  +        G  IHS V+K GL+    V +A++ 
Sbjct: 283 RFFVRMMRESGVQPDMYSFTSVVSVCSEHGCDDRQGRSIHSLVVKIGLEGVTHVCNAMIA 342

Query: 311 MYSKCGQ---VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           MY++  +   +E A   F SL  K+ V+WN+M+TGY+ +G  +  +  F  ++   ++  
Sbjct: 343 MYTRFTENCMMEDAYKCFDSLVFKDAVSWNSMLTGYSHHGLSSDALRFFRFMR-AENVST 401

Query: 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQR 427
           D       L +CS  D+   ++     S+    G         S+I +  + G V  A++
Sbjct: 402 DEFALSAALRSCS--DLAVLRLGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARK 459

Query: 428 MIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV-YVMLCNLYTSHG 486
              E   GS  V W +++                +E++  +   D+V +V L   Y+  G
Sbjct: 460 SFEEADKGS-SVPWNSMMFGYAQHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTAYSHGG 518

Query: 487 NWDVASVMRNFMRER 501
             D  S + N M  R
Sbjct: 519 LVDEGSEILNSMETR 533



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 171/423 (40%), Gaps = 78/423 (18%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++     LL       W +  QQLH  I K G    + V  A +  Y +  + AD+ ++
Sbjct: 194 PDDATFAALLATVEGPSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADSRRI 253

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER-SEIYADAYSFTSALAACGQLG- 118
           F  I    ++SWNS++  Y   G   +A+  FV + R S +  D YSFTS ++ C + G 
Sbjct: 254 FDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCSEHGC 313

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS---VEDAIGVFGEMIDKDIISWNS 175
             + G +IHS +VK  LE    + N +I MY +      +EDA   F  ++ KD +SWNS
Sbjct: 314 DDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYTRFTENCMMEDAYKCFDSLVFKDAVSWNS 373

Query: 176 VIAASARNGNLELAFGF----------------------------------LHRLPNPDT 201
           ++   + +G    A  F                                  +H L     
Sbjct: 374 MLTGYSHHGLSSDALRFFRFMRAENVSTDEFALSAALRSCSDLAVLRLGRQVHSLVIQSG 433

Query: 202 ISYNEVINGIAQF-----GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
            S N+ ++    F     G + DA          +S  WNS++ GY    +      LF 
Sbjct: 434 FSSNDFVSSSLIFMYSKCGMVGDARKSFEEADKGSSVPWNSMMFGYAQHGQAQTVTDLFS 493

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           EM    VP+D  TF  +L+  +           H  ++ +G        S +L+  S   
Sbjct: 494 EMLDHKVPLDHVTFVALLTAYS-----------HGGLVDEG--------SEILN--SMET 532

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           + +I   M    C  +L         Y R G L K  EL E +      QPD++ ++ +L
Sbjct: 533 RYKIPLRMEHYACGVDL---------YGRAGQLDKAKELIESMP----FQPDAMVWMTLL 579

Query: 377 AAC 379
            AC
Sbjct: 580 GAC 582



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 2/190 (1%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +E+ L   LR+ SDL      +Q+H  +++SGF SN FVS++L+  Y K   + DA K F
Sbjct: 402 DEFALSAALRSCSDLAVLRLGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSF 461

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            E  + S V WNS++ GY Q G+ +   +LF E+   ++  D  +F + L A    G + 
Sbjct: 462 EEADKGSSVPWNSMMFGYAQHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTAYSHGGLVD 521

Query: 122 LGMAI-HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
            G  I +S   +Y +   +    C +D+YG+ G ++ A  +   M    D + W +++ A
Sbjct: 522 EGSEILNSMETRYKIPLRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAMVWMTLLGA 581

Query: 180 SARNGNLELA 189
              +GN+ELA
Sbjct: 582 CRIHGNMELA 591


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 152/526 (28%), Positives = 270/526 (51%), Gaps = 41/526 (7%)

Query: 30  LKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKAL 89
           ++ G   N FV ++++ F  K   + +A ++F  +P   VV WNS+I GYVQ+G +  A 
Sbjct: 157 VEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAF 216

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
            LF E+  S I     + TS + ACG +G+L+LG  +H  ++   L   +++    +DMY
Sbjct: 217 QLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMY 276

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------------- 196
            K G +E A  VF +M  ++++SWN++I+   RNG +  +F   HRL             
Sbjct: 277 SKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIV 336

Query: 197 ------PNPDTISYNEVINGIA-------------------QFGDIEDAIMILSSMPSPN 231
                     +++  ++++G A                   + G ++ A  + + M   N
Sbjct: 337 SLLQGCSQTASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRN 396

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             +W ++L G        +AL LF +MQ + +  +  TF +++   A L +L  G  IH 
Sbjct: 397 VITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHG 456

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMF-RSLCRKNLVTWNAMITGYARNGDLT 350
            + + G    IV  +AL+DMY+KCG++ +A+ +F      K++V WN+MITGY  +G   
Sbjct: 457 HLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGY 516

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + + ++ ++     L+P+  TFL++L+ACSH+ +    +S  F SM +D+ I+P  +H  
Sbjct: 517 QAVGIYHKM-IEEGLKPNQTTFLSLLSACSHSRLVEQGIS-LFNSMERDHNIRPIEKHYA 574

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            ++ L+ + G    AQ +I ++ F     V  ALLS      ++++   ++ +++ L+  
Sbjct: 575 CLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAM 634

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +  +Y+ML N+Y     WD    +R  MR RGL+K  G S +E  N
Sbjct: 635 NPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGN 680



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 124/481 (25%), Positives = 233/481 (48%), Gaps = 47/481 (9%)

Query: 9   LLRASS-DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP 67
           LLR SS +L W    +  H  I+ +   ++ FV+T L+  Y  + SL  A  +F +  QP
Sbjct: 37  LLRESSKNLIW---VKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQP 93

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
             +  N+++ GY+QSG+YR+ L LF  +    +  D+ S T AL AC      ++GM I 
Sbjct: 94  KGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEII 153

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
           S  V+  +E+   + + +I    K G + +A  VF  M +KD++ WNS+I    + G  +
Sbjct: 154 SSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFD 213

Query: 188 LAFGFLHRL------PNP---------------------------------DTISYNEVI 208
           +AF     +      P+P                                 D +     +
Sbjct: 214 VAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFV 273

Query: 209 NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268
           +  ++ GDIE A  +   MP+ N  SWN++++G V    V E+  LF  +       D  
Sbjct: 274 DMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLT 333

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           T  ++L G +  ++L  G ++H C I+   ++++++++A++D+YSKCG ++ A  +F  +
Sbjct: 334 TIVSLLQGCSQTASLATGKILHGCAIRS-FESNLILSTAIVDLYSKCGSLKQATFVFNRM 392

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDK 388
             +N++TW AM+ G A+NG     + LF Q++    +  +SVTF++++ +C+H  +   K
Sbjct: 393 KDRNVITWTAMLVGLAQNGHAEDALRLFAQMQE-EGIAANSVTFVSLVHSCAH--LGSLK 449

Query: 389 VSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSAS 448
                       G    + +  +++ +  + G++  A+R+          V+W ++++  
Sbjct: 450 RGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGY 509

Query: 449 G 449
           G
Sbjct: 510 G 510



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 108/458 (23%), Positives = 212/458 (46%), Gaps = 69/458 (15%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  L++A   +G     + +H Y+L  G  +++ V T+ +  Y K+  +  A  +
Sbjct: 229 PSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWV 288

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P  ++VSWN++ISG V++G   ++ +LF  L RS    D  +  S L  C Q  SL
Sbjct: 289 FYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASL 348

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H   ++ S E  ++++  ++D+Y KCGS++ A  VF  M D+++I+W +++   
Sbjct: 349 ATGKILHGCAIR-SFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGL 407

Query: 181 ARNGNLELAF--------------------------------------GFLHRLPNP-DT 201
           A+NG+ E A                                       G L RL    D 
Sbjct: 408 AQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDI 467

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMP-SPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
           ++   +++  A+ G I  A  I S    S +   WNS++TGY       +A+ ++ +M  
Sbjct: 468 VNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIE 527

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL--------DASIVVA----SAL 308
           + +  ++ TF ++LS  +           HS +++QG+        D +I       + L
Sbjct: 528 EGLKPNQTTFLSLLSACS-----------HSRLVEQGISLFNSMERDHNIRPIEKHYACL 576

Query: 309 LDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           +D+ S+ G+ E A ++   +  +       A+++G   + ++   I+  ++L  +  + P
Sbjct: 577 VDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNP 636

Query: 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
                L+ + A +     +DKV +Y   + ++ G+K T
Sbjct: 637 GIYIMLSNIYAEARR---WDKV-DYIRGLMRNRGLKKT 670


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 168/556 (30%), Positives = 275/556 (49%), Gaps = 41/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL A + LG      QLH Y+ K+G  S+  +  +L+  Y K   +  A  +
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    + +VV WN ++  + Q     K+  LF +++ + I  + +++   L  C     +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IHS  VK   E  + ++  LIDMY K G +E A  V   + +KD++SW S+IA  
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421

Query: 181 ARNGNLELAFGFLHRLPN----PDTIS--------------------------------- 203
            ++   + A      +      PD I                                  
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDV 481

Query: 204 --YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
             +N ++N  A+ G I +A      +   +  +WN +++G+       EAL +F  M   
Sbjct: 482 SIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQS 541

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  + +TF + LS  A L+ +  G  IH+ VIK G      V +AL+ +Y KCG  E A
Sbjct: 542 GVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDA 601

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F  +  +N V+WN +IT  +++G   + ++LF+Q+K    ++P+ VTF+ VLAACSH
Sbjct: 602 KMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKK-EGIKPNDVTFIGVLAACSH 660

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  + +S YF+SM+ +YGI+P  +H   +I + G+ G++ RA++ I E+   +  +VW
Sbjct: 661 VGLVEEGLS-YFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVW 719

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LLSA     +++V   +A  +++LE      YV+L N Y     W     +R  MR+R
Sbjct: 720 RTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDR 779

Query: 502 GLRKEAGCSWIEVENV 517
           G+RKE G SWIEV+NV
Sbjct: 780 GVRKEPGRSWIEVKNV 795



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 207/417 (49%), Gaps = 40/417 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  YVL  +L + +        + +H    K GF S +FV  A++  Y +  S   A ++
Sbjct: 141 PTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERV 200

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P    V++N+LISG+ Q G    AL +F E++ S +  D  + +S LAAC  LG L
Sbjct: 201 FCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDL 260

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           Q G  +HS + K  +    ++   L+D+Y KCG VE A+ +F      +++ WN ++ A 
Sbjct: 261 QKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAF 320

Query: 181 ARNGNLELAFGFLHRL------PNPDT-------------ISYNEVINGI---------- 211
            +  +L  +F    ++      PN  T             I   E I+ +          
Sbjct: 321 GQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDM 380

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     +++G +E A  +L  +   +  SW S++ GYV      +AL  F EMQ  
Sbjct: 381 YVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKC 440

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D    ++ +SG AG++A+  G+ IH+ +   G    + + +AL+++Y++CG++  A
Sbjct: 441 GIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREA 500

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            S F  +  K+ +TWN +++G+A++G   + +++F ++     ++ +  TF++ L+A
Sbjct: 501 FSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQ-SGVKHNVFTFVSALSA 556



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 185/396 (46%), Gaps = 40/396 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           ++H   +  G      V   L+  Y K   +  A ++F E+     VSW +++SGY Q+G
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
              +AL L+ ++ R+ +    Y  +S L++C +      G  IH++  K+     + + N
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGN 182

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NP 199
            +I +Y +CGS   A  VF +M  +D +++N++I+  A+ G+ E A      +     +P
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSP 242

Query: 200 DTISYNEVINGIAQF-----------------------------------GDIEDAIMIL 224
           D ++ + ++   A                                     GD+E A++I 
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIF 302

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
           +S    N   WN +L  +   N + ++  LF +MQ+  +  +++T+  +L        + 
Sbjct: 303 NSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREID 362

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  IHS  +K G ++ + V+  L+DMYSK G +E A  +   L  K++V+W +MI GY 
Sbjct: 363 LGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYV 422

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           ++      +  F++++    + PD++   + ++ C+
Sbjct: 423 QHECCKDALAAFKEMQKC-GIWPDNIGLASAISGCA 457



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 111/402 (27%), Positives = 184/402 (45%), Gaps = 43/402 (10%)

Query: 71  SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC-GQLGSLQLGMAIHSK 129
           S    ++G++      K L+LF +  R         F  AL AC G     Q+   IH+K
Sbjct: 8   SLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVPEIHAK 67

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
            V   L +  ++ N LID+Y K G V  A  VF E+  +D +SW ++++  A+NG  E A
Sbjct: 68  AVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEA 127

Query: 190 FGF---LHR---LPNPDTISY---------------------------------NEVING 210
            G    +HR   +P P  +S                                  N VI  
Sbjct: 128 LGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITL 187

Query: 211 IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
             + G    A  +   MP  ++ ++N++++G+        AL +F EMQ   +  D  T 
Sbjct: 188 YLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTI 247

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
           S++L+  A L  L  G  +HS + K G+ +  ++  +LLD+Y KCG VE A  +F S  R
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDR 307

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
            N+V WN M+  + +  DL K  ELF Q++    ++P+  T+  +L  C+ T    D + 
Sbjct: 308 TNVVLWNLMLVAFGQINDLAKSFELFCQMQAA-GIRPNQFTYPCILRTCTCTR-EID-LG 364

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
           E   S++   G +  +     +I +  + G + +A+R++  L
Sbjct: 365 EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEML 406


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 159/528 (30%), Positives = 268/528 (50%), Gaps = 36/528 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH  ILKS    ++FV   L+  +     +  A   F ++  P+V  +N++I  +  +
Sbjct: 37  KQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHN 96

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            +  +A   F  ++R   YAD ++F   L  C     L +  ++H++I K+     V + 
Sbjct: 97  SQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVP 156

Query: 143 NCLIDMYGKCGSV----------------------------------EDAIGVFGEMIDK 168
           N LID Y KCGS                                   E+A  VF EM +K
Sbjct: 157 NSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDEMPEK 216

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP 228
           D ISWN+++    + G ++ AF     +P  + +S++ ++ G  + GD+E A M+   MP
Sbjct: 217 DGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMP 276

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             N  SW  I++G+  +    EA+ LF +M+   + +D  T  ++L+  A    L  G  
Sbjct: 277 VKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEK 336

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           IH+ +       +  +++AL+DMY+KCG++ IA  +F  +  K++V+WNAM+ G A +G 
Sbjct: 337 IHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGH 396

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
             K +ELF+++K      P+ VT + VL AC+H  +  D +  YF +M +DY + P VEH
Sbjct: 397 GVKALELFKRMKE-EGFSPNKVTMIGVLCACTHAGLIDDGI-RYFSTMERDYTLVPEVEH 454

Query: 409 CCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE 468
              M+ L+G+KG +  A R+IR +      ++W  LL A    + +++AR     +++LE
Sbjct: 455 YGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHNAVELAREVLDHLVELE 514

Query: 469 GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
                 + ML N+Y + G+W+  +  R  MR  G +K +G S IEV N
Sbjct: 515 PTDSGNFSMLSNIYAAAGDWNCVANTRLRMRSIGTKKPSGASSIEVNN 562



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 5/213 (2%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           +L A ++ G     +++H  I  + F     +S AL+  Y K   L  A+ +F +I    
Sbjct: 321 ILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKD 380

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           VVSWN+++ G    G   KAL LF  ++      +  +    L AC   G +  G+   S
Sbjct: 381 VVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFS 440

Query: 129 KIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNL 186
            + + Y+L   V    C++D+ G+ G +E+AI +   M +  + I W +++ A   +  +
Sbjct: 441 TMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHNAV 500

Query: 187 ELA---FGFLHRLPNPDTISYNEVINGIAQFGD 216
           ELA      L  L   D+ +++ + N  A  GD
Sbjct: 501 ELAREVLDHLVELEPTDSGNFSMLSNIYAAAGD 533


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 168/556 (30%), Positives = 275/556 (49%), Gaps = 41/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL A + LG      QLH Y+ K+G  S+  +  +L+  Y K   +  A  +
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    + +VV WN ++  + Q     K+  LF +++ + I  + +++   L  C     +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IHS  VK   E  + ++  LIDMY K G +E A  V   + +KD++SW S+IA  
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421

Query: 181 ARNGNLELAFGFLHRLPN----PDTIS--------------------------------- 203
            ++   + A      +      PD I                                  
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDV 481

Query: 204 --YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
             +N ++N  A+ G I +A      +   +  +WN +++G+       EAL +F  M   
Sbjct: 482 SIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQS 541

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  + +TF + LS  A L+ +  G  IH+ VIK G      V +AL+ +Y KCG  E A
Sbjct: 542 GVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDA 601

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F  +  +N V+WN +IT  +++G   + ++LF+Q+K    ++P+ VTF+ VLAACSH
Sbjct: 602 KMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKK-EGIKPNDVTFIGVLAACSH 660

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  + +S YF+SM+ +YGI+P  +H   +I + G+ G++ RA++ I E+   +  +VW
Sbjct: 661 VGLVEEGLS-YFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVW 719

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LLSA     +++V   +A  +++LE      YV+L N Y     W     +R  MR+R
Sbjct: 720 RTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDR 779

Query: 502 GLRKEAGCSWIEVENV 517
           G+RKE G SWIEV+NV
Sbjct: 780 GVRKEPGRSWIEVKNV 795



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 207/417 (49%), Gaps = 40/417 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  YVL  +L + +        + +H    K GF S +FV  A++  Y +  S   A ++
Sbjct: 141 PTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERV 200

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P    V++N+LISG+ Q G    AL +F E++ S +  D  + +S LAAC  LG L
Sbjct: 201 FCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDL 260

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           Q G  +HS + K  +    ++   L+D+Y KCG VE A+ +F      +++ WN ++ A 
Sbjct: 261 QKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAF 320

Query: 181 ARNGNLELAFGFLHRL------PNPDT-------------ISYNEVINGI---------- 211
            +  +L  +F    ++      PN  T             I   E I+ +          
Sbjct: 321 GQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDM 380

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     +++G +E A  +L  +   +  SW S++ GYV      +AL  F EMQ  
Sbjct: 381 YVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKC 440

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D    ++ +SG AG++A+  G+ IH+ +   G    + + +AL+++Y++CG++  A
Sbjct: 441 GIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREA 500

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            S F  +  K+ +TWN +++G+A++G   + +++F ++     ++ +  TF++ L+A
Sbjct: 501 FSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQ-SGVKHNVFTFVSALSA 556



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 185/396 (46%), Gaps = 40/396 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           ++H   +  G      V   L+  Y K   +  A ++F E+     VSW +++SGY Q+G
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
              +AL L+ ++ R+ +    Y  +S L++C +      G  IH++  K+     + + N
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGN 182

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NP 199
            +I +Y +CGS   A  VF +M  +D +++N++I+  A+ G+ E A      +     +P
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSP 242

Query: 200 DTISYNEVINGIAQF-----------------------------------GDIEDAIMIL 224
           D ++ + ++   A                                     GD+E A++I 
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIF 302

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
           +S    N   WN +L  +   N + ++  LF +MQ+  +  +++T+  +L        + 
Sbjct: 303 NSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREID 362

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  IHS  +K G ++ + V+  L+DMYSK G +E A  +   L  K++V+W +MI GY 
Sbjct: 363 LGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYV 422

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           ++      +  F++++    + PD++   + ++ C+
Sbjct: 423 QHECCKDALAAFKEMQKC-GIWPDNIGLASAISGCA 457



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 111/402 (27%), Positives = 184/402 (45%), Gaps = 43/402 (10%)

Query: 71  SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC-GQLGSLQLGMAIHSK 129
           S    ++G++      K L+LF +  R         F  AL AC G     Q+   IH+K
Sbjct: 8   SLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVPEIHAK 67

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
            V   L +  ++ N LID+Y K G V  A  VF E+  +D +SW ++++  A+NG  E A
Sbjct: 68  AVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEA 127

Query: 190 FGF---LHR---LPNPDTISY---------------------------------NEVING 210
            G    +HR   +P P  +S                                  N VI  
Sbjct: 128 LGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITL 187

Query: 211 IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
             + G    A  +   MP  ++ ++N++++G+        AL +F EMQ   +  D  T 
Sbjct: 188 YLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTI 247

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
           S++L+  A L  L  G  +HS + K G+ +  ++  +LLD+Y KCG VE A  +F S  R
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDR 307

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
            N+V WN M+  + +  DL K  ELF Q++    ++P+  T+  +L  C+ T    D + 
Sbjct: 308 TNVVLWNLMLVAFGQINDLAKSFELFCQMQAA-GIRPNQFTYPCILRTCTCTR-EID-LG 364

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
           E   S++   G +  +     +I +  + G + +A+R++  L
Sbjct: 365 EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEML 406


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 162/473 (34%), Positives = 245/473 (51%), Gaps = 41/473 (8%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD 103
           LMG Y K N L DA ++F  +P   V+SWN++ISGY Q G   +A  LF E         
Sbjct: 207 LMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNE--------- 257

Query: 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
                                         S  R V     ++  Y + G V++A   F 
Sbjct: 258 ------------------------------SPIRDVFTWTAMVSGYVQNGMVDEARKYFD 287

Query: 164 EMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMI 223
           EM  K+ IS+N+++A   +   + +A      +P  +  S+N +I G  Q G I  A  +
Sbjct: 288 EMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKL 347

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              MP  +  SW +I++GY       EAL++F EM+      +  TFS  LS  A ++AL
Sbjct: 348 FDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAAL 407

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H  V+K G +    V +ALL MY KCG  + A+ +F  +  K++V+WN MI GY
Sbjct: 408 ELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGY 467

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           AR+G   + + LFE +K    ++PD +T + VL+ACSH+ +  D+ +EYF SM +DY +K
Sbjct: 468 ARHGFGRQALVLFESMKKA-GVKPDEITMVGVLSACSHSGL-IDRGTEYFYSMDRDYNVK 525

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           PT +H   MI L+G+ G +  A+ ++R + F      W ALL AS    + ++   +A  
Sbjct: 526 PTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEM 585

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           V K+E  +  +YV+L NLY + G W     MR+ MRE G++K  G SW+EV+N
Sbjct: 586 VFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQN 638



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 178/344 (51%), Gaps = 24/344 (6%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A ++F  +P+ S VS+N++ISGY+++ K+  A +LF ++   ++      F+  +   G 
Sbjct: 65  ALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDL------FSWNVMLTGY 118

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           + + +LG A   K+     ++ VV  N ++  Y + G V++A  VF +M  ++ ISWN +
Sbjct: 119 VRNRRLGEA--HKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGL 176

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
           +AA   NG L+ A        N + IS+N ++ G  +   + DA  +   MP  +  SWN
Sbjct: 177 LAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWN 236

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           ++++GY     + +A  LF E   +DV    +T++ M+SG      +  GM+  +     
Sbjct: 237 TMISGYAQVGDLSQAKRLFNESPIRDV----FTWTAMVSGY-----VQNGMVDEARKYFD 287

Query: 297 GLDASIVVA-SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
            +     ++ +A+L  Y +  ++ IA  +F ++  +N+ +WN MITGY +NG + +  +L
Sbjct: 288 EMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKL 347

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKD 399
           F+ +      Q D V++  +++  +     +++    F  M +D
Sbjct: 348 FDMMP-----QRDCVSWAAIISGYAQNG-HYEEALNMFVEMKRD 385



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 168/340 (49%), Gaps = 19/340 (5%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
            A++  Y +    + A  +F ++P+  + SWN +++GYV++ +  +A  LF  + +    
Sbjct: 81  NAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKK--- 137

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            D  S+ + L+   Q G +     + +K+      R  +  N L+  Y   G +++A  +
Sbjct: 138 -DVVSWNAMLSGYAQNGFVDEAREVFNKMP----HRNSISWNGLLAAYVHNGRLKEARRL 192

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F    + ++ISWN ++    +   L  A     R+P  D IS+N +I+G AQ GD+  A 
Sbjct: 193 FESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAK 252

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            + +  P  +  +W ++++GYV    V EA   F EM  K    +E +++ ML+G     
Sbjct: 253 RLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVK----NEISYNAMLAGYVQYK 308

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
                M+I   + +     +I   + ++  Y + G +  A  +F  + +++ V+W A+I+
Sbjct: 309 K----MVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIIS 364

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQ-PDSVTFLNVLAACS 380
           GYA+NG   + + +F ++K  RD +  +  TF   L+ C+
Sbjct: 365 GYAQNGHYEEALNMFVEMK--RDGESSNRSTFSCALSTCA 402



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 93/169 (55%), Gaps = 2/169 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  ++K+GF +  FV  AL+G Y K  S  +A+ +F  I +  VVSWN++I+GY + 
Sbjct: 411 KQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARH 470

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA-IHSKIVKYSLERGVVI 141
           G  R+AL LF  ++++ +  D  +    L+AC   G +  G    +S    Y+++     
Sbjct: 471 GFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKH 530

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLELA 189
             C+ID+ G+ G +E+A  +   M  D    SW +++ AS  +GN EL 
Sbjct: 531 YTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELG 579



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 125/257 (48%), Gaps = 37/257 (14%)

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
           D DI++WN  I++  RNG+ + A    + +P   ++SYN +I+G  +      A  +   
Sbjct: 43  DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDK 102

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG------- 279
           MP  +  SWN +LTGYV   R+ EA  LF  M  KDV     +++ MLSG A        
Sbjct: 103 MPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDV----VSWNAMLSGYAQNGFVDEA 158

Query: 280 ---------LSALTWGML----IHSCVIKQGL-------DASIVVASALLDMYSKCGQVE 319
                     ++++W  L    +H+  +K+         +  ++  + L+  Y K   + 
Sbjct: 159 REVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLG 218

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F  +  +++++WN MI+GYA+ GDL++   LF +   +RD+     T+  +++  
Sbjct: 219 DARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNE-SPIRDV----FTWTAMVSGY 273

Query: 380 SHTDIPFDKVSEYFESM 396
               +  D+  +YF+ M
Sbjct: 274 VQNGM-VDEARKYFDEM 289



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 87/163 (53%), Gaps = 8/163 (4%)

Query: 195 RLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
           +  +PD +++N+ I+   + G  + A+ + +SMP  +S S+N++++GY+   +   A  L
Sbjct: 40  KFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDL 99

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F +M  +D+    ++++ ML+G      L     +   + K+     +V  +A+L  Y++
Sbjct: 100 FDKMPERDL----FSWNVMLTGYVRNRRLGEAHKLFDLMPKK----DVVSWNAMLSGYAQ 151

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
            G V+ A  +F  +  +N ++WN ++  Y  NG L +   LFE
Sbjct: 152 NGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFE 194



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 141/317 (44%), Gaps = 20/317 (6%)

Query: 35  LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE 94
           + +VF  TA++  Y +   + +A K F E+P  + +S+N++++GYVQ  K   A  LF  
Sbjct: 260 IRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEA 319

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           +    I     S+ + +   GQ G    G+A   K+     +R  V    +I  Y + G 
Sbjct: 320 MPCRNI----SSWNTMITGYGQNG----GIAQARKLFDMMPQRDCVSWAAIISGYAQNGH 371

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISY---------N 205
            E+A+ +F EM  +D  S N    + A +   ++A   L +  +   +           N
Sbjct: 372 YEEALNMFVEM-KRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGN 430

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
            ++    + G  ++A  +   +   +  SWN+++ GY       +AL LF  M+   V  
Sbjct: 431 ALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKP 490

Query: 266 DEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
           DE T   +LS  +    +  G    +S      +  +    + ++D+  + G++E A+++
Sbjct: 491 DEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENL 550

Query: 325 FRSLC-RKNLVTWNAMI 340
            R++       +W A++
Sbjct: 551 MRNMPFDPGAASWGALL 567


>gi|222629201|gb|EEE61333.1| hypothetical protein OsJ_15451 [Oryza sativa Japonica Group]
          Length = 1037

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 170/574 (29%), Positives = 289/574 (50%), Gaps = 52/574 (9%)

Query: 2    NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
            +E+    +L A + L      +Q+HC  +K+    ++FV+ A +  Y K  ++ DA  +F
Sbjct: 435  DEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALF 494

Query: 62   VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
              IP    +SWN+L  G  Q+ +  +A+ +   +    I  D  SF++A+ AC  + + +
Sbjct: 495  SLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATE 554

Query: 122  LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
             G  IH   +KY +     + + LID+Y K G VE +  +F ++    I+  N++IA   
Sbjct: 555  TGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFV 614

Query: 182  RNGNLELAFGFLHRLPN----PDTISYNEVINGIAQ--------------------FGD- 216
            +N N + A     ++      P +++++ +++G +                     + D 
Sbjct: 615  QNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDT 674

Query: 217  ---------------IEDAIMILSSMPS-PNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                           +EDA  +L+ MP   N   W +I++GY        +L  F  M+ 
Sbjct: 675  LLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRH 734

Query: 261  KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             +V  DE TF+++L   + ++A   G  IH  + K G  +     SAL+DMYSKCG V  
Sbjct: 735  CNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVIS 794

Query: 321  ADSMFRSLCRK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            +   F+ L  K +++ WN+MI G+A+NG   + + LF++++ ++ ++PD VTFL VL AC
Sbjct: 795  SFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQ-IKPDEVTFLGVLIAC 853

Query: 380  SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
            +H+ +   +   +F SM K YG+ P ++H    I L+G+ G +  AQ  I +L F   GV
Sbjct: 854  THSGL-ISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGV 912

Query: 440  VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
            VW   L+A     D +  +I+A ++++LE      YV+L +L+ + GNW  A V R  MR
Sbjct: 913  VWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMR 972

Query: 500  ERGLRKEAGCSWIEVENVAA--------HSSNIR 525
            E+G+ K  GCSWI V N  +        H  N+R
Sbjct: 973  EKGVAKFPGCSWITVGNKTSLFLVQDKYHPDNLR 1006



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 186/365 (50%), Gaps = 6/365 (1%)

Query: 22  CQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           C+ LH  IL+ G      +  +L+  Y K   +  A        + +  + +SL+S + +
Sbjct: 85  CRALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHAR 144

Query: 82  SGKYRKALNLFVELE-RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           SG     L  F  +   +    D +     L+AC ++G L  G  +H  +VK      V 
Sbjct: 145 SGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVF 204

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-- 198
               L+DMY KCG V +A  VF  +   D I W+S+IA   R G  + A     R+    
Sbjct: 205 CEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMG 264

Query: 199 --PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
             PD ++   +I+ +A  G ++ A  +L  MP+P++ +WN++++G+         L L+ 
Sbjct: 265 SAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYK 324

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           +M+S  +     TF++MLS  A + A   G  +H+  +  GLDA++ V S+L+++Y+KCG
Sbjct: 325 DMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCG 384

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
               A ++F   C KN+V WNAM+TG+ +N    + I +F+ +     LQ D  TF+++L
Sbjct: 385 CPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRY-TLQTDEFTFVSIL 443

Query: 377 AACSH 381
            AC++
Sbjct: 444 GACTY 448



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 220/446 (49%), Gaps = 27/446 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++ L  +L A S +G   Y +Q+HC ++KSGF S+VF   AL+  Y K   + +A ++
Sbjct: 166 PDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRV 225

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I  P  + W+S+I+ Y + G Y++AL LF  +++     D  +  + ++     G L
Sbjct: 226 FDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRL 285

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN------ 174
               A+  K+   S     V  N +I  + + G   + +G++     KD+ SW       
Sbjct: 286 DHATALLKKMPTPS----TVAWNAVISGHAQSGLEFNVLGLY-----KDMRSWGLWPTRS 336

Query: 175 ---SVIAASAR-----NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
              S+++A+A       G    A   +H L + +    + +IN  A+ G   DA  +   
Sbjct: 337 TFASMLSAAANMKAFVEGQQMHAAAVMHGL-DANVFVGSSLINLYAKCGCPSDAKNVFDL 395

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
               N   WN++LTG+V      EA+ +F  M    +  DE+TF ++L     LS+   G
Sbjct: 396 SCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLG 455

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
             +H   IK  +D S+ VA+A LDMYSK G +  A ++F  +  K+ ++WNA+  G A+N
Sbjct: 456 KQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQN 515

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
            +  + + + ++++ +  + PD V+F   + ACS  +I   +  +    +   YGI    
Sbjct: 516 LEEEEAVCMLKRMR-LHGITPDDVSFSTAINACS--NIRATETGKQIHCLAIKYGICSNH 572

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIREL 432
               S+I L  + G+V  ++++  ++
Sbjct: 573 AVGSSLIDLYSKHGDVESSRKIFAQV 598



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 203/421 (48%), Gaps = 42/421 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P       +L A++++      QQ+H   +  G  +NVFV ++L+  Y K    +DA  +
Sbjct: 333 PTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNV 392

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    + ++V WN++++G+VQ+    +A+ +F  + R  +  D ++F S L AC  L S 
Sbjct: 393 FDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSF 452

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  +H   +K  ++  + +AN  +DMY K G++ DA  +F  +  KD ISWN++    
Sbjct: 453 YLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGL 512

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVIN---------------------GI---- 211
           A+N   E A   L R+      PD +S++  IN                     GI    
Sbjct: 513 AQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNH 572

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     ++ GD+E +  I + + + +    N+++ G+V  N   EA+ LF ++   
Sbjct: 573 AVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKD 632

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEI 320
            +     TFS++LSG +G      G  +H   +K G L    ++  +L  +Y K   +E 
Sbjct: 633 GLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLED 692

Query: 321 ADSMFRSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           A+ +   +   KNL  W A+I+GYA+NG     +  F +++   +++ D  TF +VL AC
Sbjct: 693 ANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHC-NVRSDEATFASVLKAC 751

Query: 380 S 380
           S
Sbjct: 752 S 752


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 153/553 (27%), Positives = 290/553 (52%), Gaps = 39/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +    +L   +  G      Q+H  ++KSG  S +FV  +++  Y K   ++DA  +
Sbjct: 191 PNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAV 250

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   + VSWNS+I+G+V +G   +A  LF  +    +      F + +  C  +  +
Sbjct: 251 FDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEM 310

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIAA 179
                +H +++K   +  + I   L+  Y KC  ++DA  +F  M   ++++SW ++I+ 
Sbjct: 311 SFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISG 370

Query: 180 SARNGNLELAFGFLHRLPN----PDTISYNEVINGIA----------------------- 212
             +NG  + A     ++      P+  +Y+ ++   A                       
Sbjct: 371 YVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQIHALVVKTNYENSPSVG 430

Query: 213 --------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
                   + GD  +A  I   +   +  +W+++L+GY     +  A+ +F ++  + V 
Sbjct: 431 TALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVE 490

Query: 265 MDEYTFSTMLSGIAGLSA-LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
            +E+TFS++L+  A  +A +  G   HSC IK G   ++ V+SAL+ MY+K G +E A+ 
Sbjct: 491 PNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANE 550

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F+    ++LV+WN+MI+GYA++G   K +++FE++++ ++L+ D +TF+ V++AC+H  
Sbjct: 551 VFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRS-KNLELDGITFIGVISACTHAG 609

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
           +  ++   YF+ M KDY I PT+EH   M+ L  + G + +A  +I ++ F +   +WR 
Sbjct: 610 L-VNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRT 668

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           LL+A     ++ +  ++A ++I L+      YV+L N+Y + GNW   + +R  M  + +
Sbjct: 669 LLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKV 728

Query: 504 RKEAGCSWIEVEN 516
           +KEAG SWIEV+N
Sbjct: 729 KKEAGYSWIEVKN 741



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 230/449 (51%), Gaps = 48/449 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+HC  +K GF+ +V V T+L+  Y K  S+ D  ++F E+   +VVSW SL++GY Q+
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQN 171

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   +AL LF +++   I  + ++F + L      G+++ G+ +H+ ++K  L+  + + 
Sbjct: 172 GLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVG 231

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-NLELAFGFLHRL----- 196
           N +++MY K   V DA  VF  M +++ +SWNS+IA    NG +LE AF   +R+     
Sbjct: 232 NSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLE-AFELFYRMRLEGV 290

Query: 197 --------------PNPDTISYN-----EVINGIAQF---------------GDIEDAIM 222
                          N   +S+      +VI   + F                +I+DA  
Sbjct: 291 KLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFK 350

Query: 223 ILSSMPS-PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           +   M    N  SW +I++GYV   R   A++LF +M+ + V  + +T+ST+L+  A +S
Sbjct: 351 LFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVS 410

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
                  IH+ V+K   + S  V +AL D YSK G    A  +F  +  K++V W+AM++
Sbjct: 411 PSQ----IHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLS 466

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYA+ GD+   +++F QL     ++P+  TF +VL AC+      ++  + F S +   G
Sbjct: 467 GYAQMGDIEGAVKIFLQLAK-EGVEPNEFTFSSVLNACAAPTASVEQ-GKQFHSCSIKSG 524

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
               +    +++ +  ++G +  A  + +
Sbjct: 525 FSNALCVSSALVTMYAKRGNIESANEVFK 553



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 205/448 (45%), Gaps = 62/448 (13%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           + ++F E PQ  +   N L+  + ++ + ++ALNLF+ L RS    D  S +  L  CG 
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           L    +G  +H + +K      V +   L+DMY K  SVED   VF EM  K+++SW S+
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 177 IAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIE-------------- 218
           +A   +NG  E A     ++      P+  ++  V+ G+A  G +E              
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 219 ---------------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
                                DA  +  SM + N+ SWNS++ G+V      EA  LF  
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M+ + V + +  F+T++   A +  +++   +H  VIK G D  + + +AL+  YSKC +
Sbjct: 285 MRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSE 344

Query: 318 VEIADSMFRSLCR----KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           +   D  F+  C     +N+V+W A+I+GY +NG   + + LF Q++    ++P+  T+ 
Sbjct: 345 I---DDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRR-EGVRPNHFTYS 400

Query: 374 NVL---AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS-MIRLMGQKGEVWRAQRMI 429
            +L   AA S + I    V   +E+        P+V    S     +G   E  +   +I
Sbjct: 401 TILTANAAVSPSQIHALVVKTNYEN-------SPSVGTALSDSYSKIGDANEAAKIFELI 453

Query: 430 RELGFGSYGVVWRALLSASGACSDLDVA 457
            E       V W A+LS      D++ A
Sbjct: 454 DEKDI----VAWSAMLSGYAQMGDIEGA 477


>gi|125561353|gb|EAZ06801.1| hypothetical protein OsI_29045 [Oryza sativa Indica Group]
          Length = 696

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 181/567 (31%), Positives = 285/567 (50%), Gaps = 49/567 (8%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N + L   LR+++         QL    LKSG  +NVF ++AL+  Y K   + DA ++F
Sbjct: 92  NTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVF 151

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +P+ + VSWN+LI+GY +SG    AL LF+E+ER  +  D  +F S L A  +  S  
Sbjct: 152 DGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLVPDEATFASLLTAV-EGPSCF 210

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIAAS 180
           L   +H KIVKY    G+ + N  I  Y +CGS++D+  +F  + D +D+ISWN+++ A 
Sbjct: 211 LMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAY 270

Query: 181 ARNGNLELAFGFLHRL-----PNPDTISYNEVINGIAQFGD------------------- 216
             NG  + A  F  R+      +PD  S+  +I+  ++ G                    
Sbjct: 271 THNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEG 330

Query: 217 --------------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
                               +EDA    +S+   ++ SWNS+LTGY       +AL  F 
Sbjct: 331 VTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFR 390

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
            M S++V  DEY FS  L   + L+ L  G  IH  VI  G  ++  V+S+L+ MYSK G
Sbjct: 391 CMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSG 450

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            ++ A   F    + + V WNAMI GYA++G    V  LF ++   R    D +TF+ ++
Sbjct: 451 IIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQ-RKAPLDHITFVGLI 509

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
            +CSH  +  D+ SE   +M   YG+   +EH    + L G+ G++ +A+++I  + F  
Sbjct: 510 TSCSHAGL-VDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEP 568

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
             +VW  LL A     ++++A   A+ +   E      YV+L ++Y+  G W   + ++ 
Sbjct: 569 DAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQR 628

Query: 497 FMRERGLRKEAGCSWIEVENVAAHSSN 523
            M++RGL K  G S IEV+N   HS N
Sbjct: 629 VMKKRGLSKVPGWSLIEVKN-EVHSFN 654



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 174/376 (46%), Gaps = 45/376 (11%)

Query: 26  HCYILKSGFLSNVFVSTALMGFYRK-INSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           H  +LKSGF +    +  L  + R   + LA A ++F E+P+   VSWN+L++ +  SG 
Sbjct: 14  HASLLKSGFAAPTPWNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAHAASGA 73

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           + +A  L   +    + ++ ++  SAL +        +G  + S  +K  L   V  A+ 
Sbjct: 74  HPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASA 133

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PD 200
           L+D+Y KCG V DA  VF  M +++ +SWN++IA    +G++  A      +      PD
Sbjct: 134 LLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLVPD 193

Query: 201 TISY----------------------------------NEVINGIAQFGDIEDAIMILSS 226
             ++                                  N  I   +Q G ++D+  I   
Sbjct: 194 EATFASLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDG 253

Query: 227 MPS-PNSSSWNSILTGYVNRNRVPEALHLFGE-MQSKDVPMDEYTFSTMLSGIAGLSALT 284
           +    +  SWN++L  Y +     EA+  F   MQ   V  D Y+F++++S  +      
Sbjct: 254 IGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDD 313

Query: 285 -WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ---VEIADSMFRSLCRKNLVTWNAMI 340
             G +IH  VIK  L+    V +AL+ MY++  +   +E A   F SL  K+ V+WN+M+
Sbjct: 314 HQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSML 373

Query: 341 TGYARNGDLTKVIELF 356
           TGY+++G     ++ F
Sbjct: 374 TGYSQHGLSADALKFF 389



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 101/202 (50%), Gaps = 9/202 (4%)

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD--IEDAIMILSSMPSPNSSSWN 236
           A+AR+    L  GF    P P    +N+++   ++     +  A  +   +P  +  SWN
Sbjct: 9   AAARSHASLLKSGFA--APTP----WNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWN 62

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           ++L  +      PEA  L   M ++ +  + +   + L   A       G  + S  +K 
Sbjct: 63  ALLAAHAASGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKS 122

Query: 297 GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
           GL  ++  ASALLD+Y+KCG+V  A  +F  +  +N V+WNA+I GY  +GD+   +ELF
Sbjct: 123 GLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELF 182

Query: 357 EQLKTVRDLQPDSVTFLNVLAA 378
            +++    L PD  TF ++L A
Sbjct: 183 LEMER-EGLVPDEATFASLLTA 203


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 155/530 (29%), Positives = 279/530 (52%), Gaps = 35/530 (6%)

Query: 20  TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79
            + +++H  I+K    ++++V+  L+  +   + +  A  +F +I  P+V  +N+LI  +
Sbjct: 37  NHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAH 96

Query: 80  VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
           VQ+ +  KA   F +++++ ++AD +++   L AC   G L     IH  + KY     +
Sbjct: 97  VQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDL 156

Query: 140 VIANCLIDMYGKCG--SVEDAIGVFGEMIDKDIISWNSVIAASARNGNL----------- 186
            + N LID Y KCG   V  A+ +F EM +KD++SWNS+I    + G+L           
Sbjct: 157 FVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMA 216

Query: 187 --------------------ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
                                 AF    ++P  + +S++ +++G  + GD+E A M+   
Sbjct: 217 ERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDK 276

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           MP  N  +W  I++G+  +    EA  L+ +M++  +  D+ T  ++L+  A    L  G
Sbjct: 277 MPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLG 336

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
             +H+ + K  +  S+ V++AL+DMY+KCG+V+ A S+F  +  ++LV+WN M+ G A +
Sbjct: 337 KKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMH 396

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           G   K I+LF +++     +PD VT + +L AC+H     D+   YF SM +D+GI P +
Sbjct: 397 GHGEKAIQLFSKMQQ-EGFKPDKVTLIAILCACTHAGF-VDQGLSYFNSMERDHGIVPHI 454

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
           EH   MI L+G+ G +  A R+++ +      V+W  LL A    + + +A      +I 
Sbjct: 455 EHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLIT 514

Query: 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           LE      Y ML N++ + G+W+  + MR  M+  G++K +G S IE+++
Sbjct: 515 LEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIELDD 564



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 106/224 (47%), Gaps = 11/224 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  L  +L A ++ G     +++H  I K     +V VS AL+  Y K   +  A  +
Sbjct: 315 PDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSI 374

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+    +VSWN ++ G    G   KA+ LF ++++     D  +  + L AC   G +
Sbjct: 375 FNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFV 434

Query: 121 QLGMAIHSKIVKYSLERGVVIA----NCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNS 175
             G++  + + +   + G+V       C+ID+ G+ G +E+A  +   M ++ + + W +
Sbjct: 435 DQGLSYFNSMER---DHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGT 491

Query: 176 VIAASARNGNLELAFGFLHR---LPNPDTISYNEVINGIAQFGD 216
           ++ A   +  + LA   L R   L   D  +Y+ + N  A  GD
Sbjct: 492 LLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFAAAGD 535


>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
 gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
 gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
          Length = 1027

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 170/574 (29%), Positives = 289/574 (50%), Gaps = 52/574 (9%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +E+    +L A + L      +Q+HC  +K+    ++FV+ A +  Y K  ++ DA  +F
Sbjct: 425 DEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALF 484

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             IP    +SWN+L  G  Q+ +  +A+ +   +    I  D  SF++A+ AC  + + +
Sbjct: 485 SLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATE 544

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  IH   +KY +     + + LID+Y K G VE +  +F ++    I+  N++IA   
Sbjct: 545 TGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFV 604

Query: 182 RNGNLELAFGFLHRLPN----PDTISYNEVINGIAQ--------------------FGD- 216
           +N N + A     ++      P +++++ +++G +                     + D 
Sbjct: 605 QNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDT 664

Query: 217 ---------------IEDAIMILSSMPS-PNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                          +EDA  +L+ MP   N   W +I++GY        +L  F  M+ 
Sbjct: 665 LLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRH 724

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            +V  DE TF+++L   + ++A   G  IH  + K G  +     SAL+DMYSKCG V  
Sbjct: 725 CNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVIS 784

Query: 321 ADSMFRSLCRK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           +   F+ L  K +++ WN+MI G+A+NG   + + LF++++ ++ ++PD VTFL VL AC
Sbjct: 785 SFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQ-IKPDEVTFLGVLIAC 843

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +H+ +   +   +F SM K YG+ P ++H    I L+G+ G +  AQ  I +L F   GV
Sbjct: 844 THSGL-ISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGV 902

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           VW   L+A     D +  +I+A ++++LE      YV+L +L+ + GNW  A V R  MR
Sbjct: 903 VWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMR 962

Query: 500 ERGLRKEAGCSWIEVENVAA--------HSSNIR 525
           E+G+ K  GCSWI V N  +        H  N+R
Sbjct: 963 EKGVAKFPGCSWITVGNKTSLFLVQDKYHPDNLR 996



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 186/365 (50%), Gaps = 6/365 (1%)

Query: 22  CQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           C+ LH  IL+ G      +  +L+  Y K   +  A        + +  + +SL+S + +
Sbjct: 75  CRALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHAR 134

Query: 82  SGKYRKALNLFVELE-RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           SG     L  F  +   +    D +     L+AC ++G L  G  +H  +VK      V 
Sbjct: 135 SGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVF 194

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-- 198
               L+DMY KCG V +A  VF  +   D I W+S+IA   R G  + A     R+    
Sbjct: 195 CEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMG 254

Query: 199 --PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
             PD ++   +I+ +A  G ++ A  +L  MP+P++ +WN++++G+         L L+ 
Sbjct: 255 SAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYK 314

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           +M+S  +     TF++MLS  A + A   G  +H+  +  GLDA++ V S+L+++Y+KCG
Sbjct: 315 DMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCG 374

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
               A ++F   C KN+V WNAM+TG+ +N    + I +F+ +     LQ D  TF+++L
Sbjct: 375 CPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRY-TLQTDEFTFVSIL 433

Query: 377 AACSH 381
            AC++
Sbjct: 434 GACTY 438



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 220/446 (49%), Gaps = 27/446 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++ L  +L A S +G   Y +Q+HC ++KSGF S+VF   AL+  Y K   + +A ++
Sbjct: 156 PDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRV 215

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I  P  + W+S+I+ Y + G Y++AL LF  +++     D  +  + ++     G L
Sbjct: 216 FDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRL 275

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN------ 174
               A+  K+   S     V  N +I  + + G   + +G++     KD+ SW       
Sbjct: 276 DHATALLKKMPTPS----TVAWNAVISGHAQSGLEFNVLGLY-----KDMRSWGLWPTRS 326

Query: 175 ---SVIAASAR-----NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
              S+++A+A       G    A   +H L + +    + +IN  A+ G   DA  +   
Sbjct: 327 TFASMLSAAANMKAFVEGQQMHAAAVMHGL-DANVFVGSSLINLYAKCGCPSDAKNVFDL 385

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
               N   WN++LTG+V      EA+ +F  M    +  DE+TF ++L     LS+   G
Sbjct: 386 SCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLG 445

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
             +H   IK  +D S+ VA+A LDMYSK G +  A ++F  +  K+ ++WNA+  G A+N
Sbjct: 446 KQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQN 505

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
            +  + + + ++++ +  + PD V+F   + ACS  +I   +  +    +   YGI    
Sbjct: 506 LEEEEAVCMLKRMR-LHGITPDDVSFSTAINACS--NIRATETGKQIHCLAIKYGICSNH 562

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIREL 432
               S+I L  + G+V  ++++  ++
Sbjct: 563 AVGSSLIDLYSKHGDVESSRKIFAQV 588



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 203/421 (48%), Gaps = 42/421 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P       +L A++++      QQ+H   +  G  +NVFV ++L+  Y K    +DA  +
Sbjct: 323 PTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNV 382

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    + ++V WN++++G+VQ+    +A+ +F  + R  +  D ++F S L AC  L S 
Sbjct: 383 FDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSF 442

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  +H   +K  ++  + +AN  +DMY K G++ DA  +F  +  KD ISWN++    
Sbjct: 443 YLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGL 502

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVIN---------------------GI---- 211
           A+N   E A   L R+      PD +S++  IN                     GI    
Sbjct: 503 AQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNH 562

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     ++ GD+E +  I + + + +    N+++ G+V  N   EA+ LF ++   
Sbjct: 563 AVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKD 622

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEI 320
            +     TFS++LSG +G      G  +H   +K G L    ++  +L  +Y K   +E 
Sbjct: 623 GLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLED 682

Query: 321 ADSMFRSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           A+ +   +   KNL  W A+I+GYA+NG     +  F +++   +++ D  TF +VL AC
Sbjct: 683 ANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHC-NVRSDEATFASVLKAC 741

Query: 380 S 380
           S
Sbjct: 742 S 742


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 168/554 (30%), Positives = 275/554 (49%), Gaps = 43/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      +L   +      +  QLH  ++  GF  +  V+ AL+  Y K   L+DA K+
Sbjct: 71  PNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKL 130

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P  +VV+WN +I+G+VQ+G   +A  LF E+  + +  D+ +F S L +  +  SL
Sbjct: 131 FNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASL 190

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH  I+++ +   V + + LID+Y KC  V  A  +F +  + DI+   ++I+  
Sbjct: 191 KQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGY 250

Query: 181 ARNG----NLELAFGFLHRLPNPDTISYNEVINGIA------------------------ 212
             NG     LE+    L    +P+ ++   V+   A                        
Sbjct: 251 VLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERR 310

Query: 213 -----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                      + G ++ A  I   MP  ++  WN+I+T      +  EA+ LF +M  +
Sbjct: 311 HVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGRE 370

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D  + S  LS  A L AL  G  IHS +IK   D+ +   SAL+DMY KCG + +A
Sbjct: 371 GLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVA 430

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACS 380
             +F  +  KN V+WN++I  Y  +G L   + LF   K + D +QPD VTFL +L+AC 
Sbjct: 431 RCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFH--KMLEDGIQPDHVTFLTILSACG 488

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H     DK  +YF  MT++YGI   +EH   ++ L G+ G +  A   I+ + F     V
Sbjct: 489 HAG-QVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGV 547

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W  LL A     ++++A +++  ++ L+ ++   YV+L N++   G W     +R+ M++
Sbjct: 548 WGTLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKK 607

Query: 501 RGLRKEAGCSWIEV 514
           RG++K  G SWIEV
Sbjct: 608 RGVQKVPGYSWIEV 621



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 118/467 (25%), Positives = 225/467 (48%), Gaps = 49/467 (10%)

Query: 33  GFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF 92
           GF  + FV ++L+  Y +   + DA ++F ++P    V WN +++G+V+ G+   A+ +F
Sbjct: 2   GFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVF 61

Query: 93  VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC 152
            ++   +   ++ +F S L+ C      + G  +H  ++        ++AN L+ MY K 
Sbjct: 62  EDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKF 121

Query: 153 GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVI 208
           G + DA+ +F  M D ++++WN +IA   +NG ++ A      +     +PD+I++   +
Sbjct: 122 GQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFL 181

Query: 209 ---------------------NGIA--------------QFGDIEDAIMILSSMPSPNSS 233
                                +GIA              +  D+  A  I     + +  
Sbjct: 182 PSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIV 241

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
              +I++GYV      +AL +F  +  + +  +  T +++L   AGL+ L  G  +H+ +
Sbjct: 242 VCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANI 301

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
           +K GLD    V SA++DMY+KCG++++A  +FR +  K+ V WNA+IT  ++NG   + I
Sbjct: 302 LKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAI 361

Query: 354 ELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMI 413
           +LF Q+     L  D V+    L+AC+  ++P     +   S          V    ++I
Sbjct: 362 DLFRQMGR-EGLSYDCVSISAALSACA--NLPALHHGKAIHSFMIKGAFDSEVFAESALI 418

Query: 414 RLMGQKGEVWRAQ---RMIRELGFGSYGVVWRALLSASGACSDLDVA 457
            + G+ G +  A+    M+RE       V W ++++A G+   L+V+
Sbjct: 419 DMYGKCGNLSVARCVFDMMRE----KNEVSWNSIIAAYGSHGHLEVS 461


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 162/521 (31%), Positives = 274/521 (52%), Gaps = 40/521 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NEY     L A + L       Q+H  + +S +LS+V++ +AL+  Y K   +  A  +F
Sbjct: 150 NEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVF 209

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            E+   S VSWNSLI+ Y Q+G   +AL +FVE+ +  +  D  +  S ++AC  + +++
Sbjct: 210 DEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIK 269

Query: 122 LGMAIHSKIVKYSLERG-VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            G  IH+++VK    R  +++ N L+DMY KC  + +A  +F  M  + ++S  S+++  
Sbjct: 270 EGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGY 329

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           A+   +++A      +   D I++N +I G  Q G+ E                      
Sbjct: 330 AKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENE---------------------- 367

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL-- 298
                    EAL LF  ++ + V    YTF  +L+  A L+ L  G   HS V+K G   
Sbjct: 368 ---------EALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRF 418

Query: 299 ----DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
               D+ + V ++L+DMY KCG VE    +F+ +  K+ V+WNAMI GYA+NG   K +E
Sbjct: 419 QYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALE 478

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
           +F ++    +  PD VT + VL ACSH  +  D+   YF SMT  +G+ P  +H   M+ 
Sbjct: 479 VFCKMLESGE-APDHVTMIGVLCACSHAGL-LDEGRYYFRSMTAQHGLMPLKDHYTCMVD 536

Query: 415 LMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474
           L+G+ G +  A+ +I E+      +VW +LL+A     ++ +      ++++++ ++   
Sbjct: 537 LLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGP 596

Query: 475 YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           YV+L N+Y  + +W     +R  MR+RG+ K+ GCSWIE++
Sbjct: 597 YVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEIQ 637



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 152/291 (52%), Gaps = 34/291 (11%)

Query: 91  LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
           L   L+   ++ D+  F+  L  C +  S +    +H+ I+K        I N LID+YG
Sbjct: 6   LVKHLKGDLLFLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYG 65

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVING 210
           KCG V+ A  +F  M++++I SWNS                               +I  
Sbjct: 66  KCGCVDVARKLFDRMLERNIFSWNS-------------------------------IICA 94

Query: 211 IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
             + G ++DA+ I   MP  +  SWNS+++G+    R  EAL  F +M      ++EY+F
Sbjct: 95  FTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSF 154

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
            + LS  AGL  L  G  IHS V +    + + + SAL+DMYSKCG+VE A S+F  +  
Sbjct: 155 GSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTV 214

Query: 331 KNLVTWNAMITGYARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVLAACS 380
           ++ V+WN++IT Y +NG + + +++F E +K    ++PD VT  +V++AC+
Sbjct: 215 RSRVSWNSLITCYEQNGPVDEALKIFVEMIKC--GVEPDEVTLASVVSACA 263



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 8/208 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL------SNVFVSTALMGFYRKINSL 54
           P  Y   +LL A ++L      +Q H ++LK GF       S+VFV  +L+  Y K  S+
Sbjct: 383 PTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSV 442

Query: 55  ADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC 114
            +  ++F  + +   VSWN++I GY Q+G   KAL +F ++  S    D  +    L AC
Sbjct: 443 ENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCAC 502

Query: 115 GQLGSLQLG-MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIIS 172
              G L  G     S   ++ L        C++D+ G+ G +E+A  +  EM +  D I 
Sbjct: 503 SHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIV 562

Query: 173 WNSVIAASARNGNLELAFGFLHRLPNPD 200
           W S++AA   + N++L    + +L   D
Sbjct: 563 WGSLLAACKVHRNIQLGEYVVKKLLEVD 590


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 162/536 (30%), Positives = 272/536 (50%), Gaps = 43/536 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++HC I+K     NV V T L+  Y K   +  ++K+F +I   +VV W S+I+GYV++
Sbjct: 174 KKIHCQIVKVPSFDNV-VLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKN 232

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
             Y + L LF  +  + +  + Y++ + + AC +L +L  G   H  ++K  +E    + 
Sbjct: 233 DLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLV 292

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
             L+DMY KCG + +A  VF E    D++ W ++I     NG++  A     ++      
Sbjct: 293 TSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIK 352

Query: 199 PDTISYNEVINGIAQFGDIE----------------------------------DAIMIL 224
           P+ ++   V++G    G++E                                  DA  + 
Sbjct: 353 PNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGIWDTNVANALVHMYAKCYQNRDAKYVF 412

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
                 +  +WNSI++G+     + EAL LF  M ++ V  +  T +++ S  A L +L 
Sbjct: 413 EMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLA 472

Query: 285 WGMLIHSCVIKQGL--DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
            G  +H+  +K G    +S+ V +ALLD Y+KCG  E A  +F ++  KN +TW+AMI G
Sbjct: 473 IGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFDTIEEKNTITWSAMIGG 532

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           Y + GD    +ELFE++   +  +P+  TF +VL+ACSHT +  ++  +YF SM KDY  
Sbjct: 533 YGKQGDTKGSLELFEEMLK-KQQKPNESTFTSVLSACSHTGM-VNEGKKYFSSMYKDYNF 590

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
            P+ +H   M+ ++ + GE+ +A  +I ++        + A L   G  S  D+  I   
Sbjct: 591 TPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIK 650

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVA 518
           +++ L  D    YV++ NLY S G W  A  +RN M++RGL K AG S +E E +A
Sbjct: 651 KMLDLHPDDASYYVLVSNLYASDGRWSQAKEVRNLMKQRGLSKIAGHSIMESEFLA 706



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 185/399 (46%), Gaps = 46/399 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q H  +  +G + ++ ++T L+  Y       DA  +F +IP+P    W  ++  Y  +
Sbjct: 73  RQAHGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLN 132

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            +  + +  +  L +     D   F+ AL AC ++  L  G  IH +IVK      VV+ 
Sbjct: 133 NESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHCQIVKVPSFDNVVLT 192

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
             L+DMY KCG ++ +  VF ++  ++++ W S+IA   +N   E      +R+   +++
Sbjct: 193 G-LLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRM-RENSV 250

Query: 203 SYNEVINGI----------------------------------------AQFGDIEDAIM 222
             NE   G                                          + GDI +A  
Sbjct: 251 LGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARR 310

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           + +     +   W +++ GY +   V EAL LF +M    +  +  T +++LSG   +  
Sbjct: 311 VFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGN 370

Query: 283 LTWGMLIHSCVIKQGL-DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           L  G  IH   IK G+ D +  VA+AL+ MY+KC Q   A  +F     K++V WN++I+
Sbjct: 371 LELGRSIHGLSIKVGIWDTN--VANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIIS 428

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           G+++NG + + + LF ++ T   + P+ VT  ++ +AC+
Sbjct: 429 GFSQNGSIHEALFLFHRMNT-ESVMPNGVTVASLFSACA 466



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 105/217 (48%), Gaps = 6/217 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL--SNVFVSTALMGFYRKINSLADAH 58
           PN   +  L  A + LG       LH Y +K GFL  S+V V TAL+ FY K      A 
Sbjct: 453 PNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESAR 512

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
            +F  I + + ++W+++I GY + G  + +L LF E+ + +   +  +FTS L+AC   G
Sbjct: 513 LIFDTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACSHTG 572

Query: 119 SLQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSV 176
            +  G    S + K Y+         C++DM  + G +E A+ +  +M I  D+  + + 
Sbjct: 573 MVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAF 632

Query: 177 IAASARNGNLELAFGFLHRLPN--PDTISYNEVINGI 211
           +     +   +L    + ++ +  PD  SY  +++ +
Sbjct: 633 LHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNL 669


>gi|302141863|emb|CBI19066.3| unnamed protein product [Vitis vinifera]
          Length = 521

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 146/502 (29%), Positives = 272/502 (54%), Gaps = 11/502 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + LH +I+K G  ++VF +  L+  Y  I+ L DA ++F E  + +V +W ++IS Y  S
Sbjct: 23  RSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLFDETLERNVATWTTMISAYSSS 82

Query: 83  GKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           G+   AL  +V+ LE      + + +++ L ACG +G L+ G  IH ++ + +L    V+
Sbjct: 83  GRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDLESGKLIHGRVFRANLGFDTVL 142

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
            N L+DMY KCGS+  A  VF +++     SWN++I+   + G +E A    +++P PDT
Sbjct: 143 MNTLLDMYVKCGSLSSARKVFDDILCPSSTSWNTMISGYGKEGLMEEAVNLFYQMPEPDT 202

Query: 202 ISYNEVINGI-------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
           +S+N +I G        A  G I+DA+ +   +P  +   W+S+++             L
Sbjct: 203 VSWNSIIAGFGILIDLYANDGKIKDALRLFYRLPEKDIVVWSSLISWCTKMGLNSLVFSL 262

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F +M + D+ +D++  S++L   + L  L  G  +HS  +K G ++  +  ++L+D+Y+K
Sbjct: 263 FRDMVNLDIEVDQFIISSVLKACSSLVGLGSGKQVHSFCVKSGYESERITVTSLIDLYAK 322

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG++E   ++F     ++ V +  +I G  +NG   + +  F+++  +  L+P+ +TFL 
Sbjct: 323 CGEIEDGLALFYCTSERDTVCYTGIIMGCGQNGRAMEAVGFFQEMIEL-GLKPNEITFLG 381

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           VL+AC H  +  ++    F+ M  +Y ++P +EH   ++ L+ Q G    A+ +I E+ F
Sbjct: 382 VLSACRHAGL-VEEAWTIFKYMKTEYKMEPHIEHYYCIVELLSQAGCFKEAEELIAEMPF 440

Query: 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494
                +W +LL A G     ++    A  ++    +   + V L N+Y +   WD +  M
Sbjct: 441 EPDQTIWNSLLGACGTHKKTELVNFIAERLLTTLPEDPSILVTLSNVYATLEMWDDSRKM 500

Query: 495 RNFMRERGLRKEAGCSWIEVEN 516
           R  +++ G+ KEAG SWI++++
Sbjct: 501 REVIKKVGM-KEAGKSWIQIKS 521



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 139/318 (43%), Gaps = 73/318 (22%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
           D +   S +  CG+  + + G ++H+ I+K  +   V  AN L+ MY     ++DA  +F
Sbjct: 2   DLHRIVSVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLF 61

Query: 163 GEMIDKDIISWNSVIAASARNGNLELAFGFLHRL-----PNPDTISYNEVINGIAQFGDI 217
            E +++++ +W ++I+A + +G  + A  F  ++       P+   Y+ V+      GD+
Sbjct: 62  DETLERNVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDL 121

Query: 218 EDAIMI----------------------------LSS-------MPSPNSSSWNSILTGY 242
           E   +I                            LSS       +  P+S+SWN++++GY
Sbjct: 122 ESGKLIHGRVFRANLGFDTVLMNTLLDMYVKCGSLSSARKVFDDILCPSSTSWNTMISGY 181

Query: 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
                + EA++LF +M   D                    ++W  +I    I        
Sbjct: 182 GKEGLMEEAVNLFYQMPEPD-------------------TVSWNSIIAGFGI-------- 214

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
                L+D+Y+  G+++ A  +F  L  K++V W+++I+   + G  + V  LF  +  +
Sbjct: 215 -----LIDLYANDGKIKDALRLFYRLPEKDIVVWSSLISWCTKMGLNSLVFSLFRDMVNL 269

Query: 363 RDLQPDSVTFLNVLAACS 380
            D++ D     +VL ACS
Sbjct: 270 -DIEVDQFIISSVLKACS 286



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 168/426 (39%), Gaps = 76/426 (17%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN ++   +L+A   +G     + +H  + ++    +  +   L+  Y K  SL+ A K+
Sbjct: 103 PNGFLYSAVLKACGLVGDLESGKLIHGRVFRANLGFDTVLMNTLLDMYVKCGSLSSARKV 162

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +I  PS  SWN++ISGY + G   +A+NLF ++       D  S+ S +A  G     
Sbjct: 163 FDDILCPSSTSWNTMISGYGKEGLMEEAVNLFYQMPE----PDTVSWNSIIAGFG----- 213

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
                                   LID+Y   G ++DA+ +F  + +KDI+ W+S+I+  
Sbjct: 214 -----------------------ILIDLYANDGKIKDALRLFYRLPEKDIVVWSSLISWC 250

Query: 181 ARNGNLELAFGFLHRLPNPDT--------------------------------------- 201
            + G   L F     + N D                                        
Sbjct: 251 TKMGLNSLVFSLFRDMVNLDIEVDQFIISSVLKACSSLVGLGSGKQVHSFCVKSGYESER 310

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           I+   +I+  A+ G+IED + +       ++  +  I+ G     R  EA+  F EM   
Sbjct: 311 ITVTSLIDLYAKCGEIEDGLALFYCTSERDTVCYTGIIMGCGQNGRAMEAVGFFQEMIEL 370

Query: 262 DVPMDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            +  +E TF  +LS    AGL    W +  +    +  ++  I     ++++ S+ G  +
Sbjct: 371 GLKPNEITFLGVLSACRHAGLVEEAWTIFKY-MKTEYKMEPHIEHYYCIVELLSQAGCFK 429

Query: 320 IADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS-VTFLNVLA 377
            A+ +   +    +   WN+++     +     V  + E+L T     P   VT  NV A
Sbjct: 430 EAEELIAEMPFEPDQTIWNSLLGACGTHKKTELVNFIAERLLTTLPEDPSILVTLSNVYA 489

Query: 378 ACSHTD 383
                D
Sbjct: 490 TLEMWD 495



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 53/115 (46%)

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
           MD +   +++       A   G  +H+ +IK G+   +  A+ LL MY     ++ A  +
Sbjct: 1   MDLHRIVSVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRL 60

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           F     +N+ TW  MI+ Y+ +G     ++ + Q+   +   P+   +  VL AC
Sbjct: 61  FDETLERNVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKAC 115


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 163/531 (30%), Positives = 282/531 (53%), Gaps = 41/531 (7%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           LH + +K G  ++VFV   L+  Y K   LA A ++F+E+     V++N+++ G  + G 
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           + +AL LF  + R+ I A  ++F+S L     +  L LG  +H+ +++ +    V + N 
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS 276

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LEL-----AFGFLHR 195
           L+D Y KC  ++D   +F EM ++D +S+N +IAA A N      L L       GF  +
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336

Query: 196 -LPNPDTISY-----------------------------NEVINGIAQFGDIEDAIMILS 225
            LP    +S                              N +I+  ++ G ++ A    S
Sbjct: 337 VLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFS 396

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           +    ++ SW +++TGYV   +  EAL LF +M+   +  D  TFS+++   + L+ +  
Sbjct: 397 NRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGL 456

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  +HS +I+ G  +S+   S L+DMY+KCG ++ A   F  +  +N ++WNA+I+ YA 
Sbjct: 457 GRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAH 516

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
            G+    I++FE +       PDSVTFL+VLAACSH  +  D+  +YF  M   Y I P 
Sbjct: 517 YGEAKNAIKMFEGMLHC-GFNPDSVTFLSVLAACSHNGLA-DECMKYFHLMKHQYSISPW 574

Query: 406 VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465
            EH   +I  +G+ G   + Q+M+ E+ F +  ++W ++L +     + ++AR++A ++ 
Sbjct: 575 KEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLF 634

Query: 466 KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            +E      YV+L N+Y   G W+ A+ ++  MR+RG+RKE+G SW+E++ 
Sbjct: 635 GMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQ 685



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/451 (24%), Positives = 197/451 (43%), Gaps = 50/451 (11%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           N+F    ++  Y     L  A  +F+  P  +  +W  ++  +  +G+   AL+LF  + 
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 132

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
              +  D  + T+ L   G         ++H   +K+ L+  V + N L+D Y K G + 
Sbjct: 133 GEGVIPDRVTVTTVLNLPGCTVP-----SLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLA 187

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLPNPDT----------- 201
            A  VF EM DKD +++N+++   ++ G     L+L F  + R   P T           
Sbjct: 188 AARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQL-FAAMRRAGIPATHFTFSSILTVA 246

Query: 202 -------------------------ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
                                       N +++  ++   ++D   +   MP  ++ S+N
Sbjct: 247 AGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYN 306

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
            I+  Y         L LF EMQ          ++TMLS    L  +  G  IH+ ++  
Sbjct: 307 VIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLL 366

Query: 297 GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
           GL +  ++ +AL+DMYSKCG ++ A S F +   K+ ++W A+ITGY +NG   + ++LF
Sbjct: 367 GLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLF 426

Query: 357 EQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLM 416
             ++    L+PD  TF +++ A S   +    +     S     G K +V     ++ + 
Sbjct: 427 SDMRRA-GLRPDRATFSSIIKASS--SLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMY 483

Query: 417 GQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
            + G +  A R   E+   +  + W A++SA
Sbjct: 484 AKCGCLDEALRTFDEMPERN-SISWNAVISA 513



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 142/295 (48%), Gaps = 21/295 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  ++  G  S   +  AL+  Y K   L  A   F    + S +SW +LI+GYVQ+
Sbjct: 357 KQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQN 416

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G++ +AL LF ++ R+ +  D  +F+S + A   L  + LG  +HS +++   +  V   
Sbjct: 417 GQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSG 476

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF----GFLHRLPN 198
           + L+DMY KCG +++A+  F EM +++ ISWN+VI+A A  G  + A     G LH   N
Sbjct: 477 SVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFN 536

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS-SSWNSILTGYVNR-NRVPEALHLFG 256
           PD++++  V+   +  G  ++ +     M    S S W       ++   RV      F 
Sbjct: 537 PDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVG----CFS 592

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           ++Q   V   E  F            + W  ++HSC I    + + V A  L  M
Sbjct: 593 QVQKMLV---EMPFKA--------DPIIWTSILHSCRIHGNQELARVAADKLFGM 636



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 130/293 (44%), Gaps = 39/293 (13%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            Q+H  +L+S  + NVFV+ +L+ FY K + L D  ++F E+P+   VS+N +I+ Y  +
Sbjct: 256 HQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWN 315

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
                 L LF E+++         + + L+  G L  + +G  IH+++V   L    ++ 
Sbjct: 316 QCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLG 375

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
           N LIDMY KCG ++ A   F    +K  ISW ++I    +NG  E A      +      
Sbjct: 376 NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLR 435

Query: 199 PDTISYNEVING-----------------------------------IAQFGDIEDAIMI 223
           PD  +++ +I                                      A+ G +++A+  
Sbjct: 436 PDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRT 495

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
              MP  NS SWN++++ Y +      A+ +F  M       D  TF ++L+ 
Sbjct: 496 FDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAA 548



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 13/229 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      +++ASS L      +QLH Y+++SG+ S+VF  + L+  Y K   L +A + 
Sbjct: 436 PDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRT 495

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+ + +SWN++IS Y   G+ + A+ +F  +       D+ +F S LAAC   G  
Sbjct: 496 FDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLA 555

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIA 178
              M   H    +YS+        C+ID  G+ G       +  EM  K D I W S++ 
Sbjct: 556 DECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILH 615

Query: 179 ASARNGNLELA-------FGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220
           +   +GN ELA       FG    +   D   Y  + N  A+ G  EDA
Sbjct: 616 SCRIHGNQELARVAADKLFG----MEPTDATPYVILSNIYARAGQWEDA 660



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 149/343 (43%), Gaps = 41/343 (11%)

Query: 183 NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGY 242
           +G+L  A     ++P+ +  S N +++  +  GD+  A  +  S P  N+++W  ++  +
Sbjct: 56  SGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAH 115

Query: 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
               R  +AL LF  M  + V  D  T +T+L+ + G +  +    +H   IK GLD  +
Sbjct: 116 AAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLN-LPGCTVPS----LHPFAIKFGLDTHV 170

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK-- 360
            V + LLD Y K G +  A  +F  +  K+ VT+NAM+ G ++ G  T+ ++LF  ++  
Sbjct: 171 FVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRA 230

Query: 361 --------------------------TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFE 394
                                      V  L   S + LNV    S  D  F    +  +
Sbjct: 231 GIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLD--FYSKCDCLD 288

Query: 395 SMTKDYGIKPTVEHCCSMIRLMGQ-----KGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
            M + +   P  ++    + +           V R  R +++LGF    + +  +LS +G
Sbjct: 289 DMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAG 348

Query: 450 ACSDLDVARISAAEVIKLE-GDSDYVYVMLCNLYTSHGNWDVA 491
           +  D+ + +   A+++ L     D +   L ++Y+  G  D A
Sbjct: 349 SLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAA 391


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  275 bits (703), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 162/553 (29%), Positives = 282/553 (50%), Gaps = 40/553 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N Y     L+A  D  +     Q+H  ILKSG + +V+V+ AL+  Y +   + +A  +F
Sbjct: 159 NTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIF 218

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +    +V+WNS+++G++Q+G Y +AL  F +L+ +++  D  S  S + A G+LG L 
Sbjct: 219 GNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLL 278

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  IH+  +K   +  +++ N LIDMY KC  +      F  M  KD+ISW +  A  A
Sbjct: 279 NGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYA 338

Query: 182 RN--------------------------------------GNLELAFGFLHRLPNPDTIS 203
           +N                                      G ++   G+  R    D + 
Sbjct: 339 QNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVL 398

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
            N +I+   + G I+ A+ I  S+   +  SW S+++ YV+     +AL +F  M+   +
Sbjct: 399 QNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGL 458

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             D  T  ++LS +  LS L  G  IH  +I++G      +++ L+DMY++CG VE A  
Sbjct: 459 EPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYK 518

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F     +NL+ W AMI+ Y  +G     +ELF ++K  + + PD +TFL +L ACSH+ 
Sbjct: 519 IFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEK-IIPDHITFLALLYACSHSG 577

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
           +  ++   + E M  +Y ++P  EH   ++ L+G++  +  A ++++ +       VW A
Sbjct: 578 L-VNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCA 636

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           LL A    S+ ++  ++A ++++L+ D+   YV++ N++ ++G W     +R  M+  GL
Sbjct: 637 LLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGL 696

Query: 504 RKEAGCSWIEVEN 516
            K  GCSWIEV N
Sbjct: 697 TKNPGCSWIEVGN 709



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 135/490 (27%), Positives = 239/490 (48%), Gaps = 58/490 (11%)

Query: 7   FHLLRASSDLGWDTYC-QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEI- 64
           F +L  +  +  D +C  ++H   +K G  S VFV  +L+  Y K N +  A K+F  + 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
            +  VVSWNS+IS Y  +G   +AL LF E+ ++ +  + Y+F +AL AC     ++LGM
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
            IH+ I+K      V +AN L+ MY + G + +A  +FG +  KDI++WNS++    +NG
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 185 NLELAFGFLHRLPN----PDTISYNEVINGIAQFG---------------DIEDAIMILS 225
               A  F + L N    PD +S   +I    + G                 +  I++ +
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGN 300

Query: 226 S--------------------MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
           +                    M   +  SW +   GY       +AL L  ++Q + + +
Sbjct: 301 TLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDV 360

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           D     ++L    GL+ L     IH   I+ GL +  V+ + ++D+Y +CG ++ A  +F
Sbjct: 361 DATMIGSILLACRGLNCLGKIKEIHGYTIRGGL-SDPVLQNTIIDVYGECGIIDYAVRIF 419

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA-CSHTDI 384
            S+  K++V+W +MI+ Y  NG   K +E+F  +K    L+PD VT +++L+A CS + +
Sbjct: 420 ESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKET-GLEPDYVTLVSILSAVCSLSTL 478

Query: 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI-----RELGFGSYGV 439
              K    F  + K + ++ ++ +  +++ +  + G V  A ++      R L      +
Sbjct: 479 KKGKEIHGF-IIRKGFILEGSISN--TLVDMYARCGSVEDAYKIFTCTKNRNL------I 529

Query: 440 VWRALLSASG 449
           +W A++SA G
Sbjct: 530 LWTAMISAYG 539



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 177/372 (47%), Gaps = 41/372 (11%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           Y K  S+ DA  +F ++ + S+ +WN+++ GYV +G+   AL ++ E+    +  D+Y+F
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-I 166
              L ACG +  L  G  IH   +KY  +  V + N L+ +Y KC  +  A  +F  M +
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS----------------------- 203
             D++SWNS+I+A + NG    A      +     ++                       
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181

Query: 204 ----------------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
                            N ++    +FG + +A +I  ++   +  +WNS+LTG++    
Sbjct: 182 IHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGL 241

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307
             EAL  F ++Q+ D+  D+ +  +++     L  L  G  IH+  IK G D++I+V + 
Sbjct: 242 YSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNT 301

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           L+DMY+KC  +      F  +  K+L++W     GYA+N    + +EL  QL+ +  +  
Sbjct: 302 LIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQ-MEGMDV 360

Query: 368 DSVTFLNVLAAC 379
           D+    ++L AC
Sbjct: 361 DATMIGSILLAC 372



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 131/271 (48%), Gaps = 41/271 (15%)

Query: 148 MYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPNPDTIS 203
           MYGKCGSV DA  +F +M ++ I +WN+++     NG     LE+     H   + D+ +
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 204 Y-----------------------------------NEVINGIAQFGDIEDAIMILSSMP 228
           +                                   N ++   A+  DI  A  +   M 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 229 SPNS-SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
             N   SWNSI++ Y       EAL LF EM    V  + YTF+  L      S +  GM
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
            IH+ ++K G    + VA+AL+ MY + G++  A  +F +L  K++VTWN+M+TG+ +NG
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
             ++ +E F  L+   DL+PD V+ ++++ A
Sbjct: 241 LYSEALEFFYDLQNA-DLKPDQVSIISIIVA 270



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 6/146 (4%)

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370
           MY KCG V  A+ +F  +  +++ TWNAM+ GY  NG+    +E++ +++ +  +  DS 
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHL-GVSFDSY 59

Query: 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
           TF  +L AC   +  F         +   YG    V    S++ L  +  ++  A+++  
Sbjct: 60  TFPVLLKACGIVEDLF--CGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFD 117

Query: 431 ELGFGSYGVVWRALLSA---SGACSD 453
            +   +  V W +++SA   +G C++
Sbjct: 118 RMYVRNDVVSWNSIISAYSGNGMCTE 143


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  275 bits (702), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 163/522 (31%), Positives = 276/522 (52%), Gaps = 40/522 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NEY     L A + L   +   Q+H  I KS +  +V++ +AL+  Y K   +A A + F
Sbjct: 150 NEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAF 209

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            ++   ++VSWNSLI+ Y Q+G   KAL +FV +    I  D  +  S  +AC  L +++
Sbjct: 210 DDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIR 269

Query: 122 LGMAIHSKIVKYSLERG-VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            G+ IH++++K+   R  +V+ N L+DMY KC  V +A  VF                  
Sbjct: 270 EGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFD----------------- 312

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                         R+P  D +S   +++G A+   ++ A ++ S+M   N  SWN+++ 
Sbjct: 313 --------------RMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIA 358

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL-- 298
           GY       EA+ LF  ++ + +    YTF  +L+  A L+ L  G   H+ ++K G   
Sbjct: 359 GYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWF 418

Query: 299 ----DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
               D+ I V ++L+DMY KCG VE    +F  +  ++ V+WNAMI GYA+NG  T+ +E
Sbjct: 419 KSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALE 478

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
           +F ++  V   +PD VT + VL+ACSH  +  ++   YF+SMT ++G+ P  +H   M+ 
Sbjct: 479 IFREM-LVSGERPDHVTMIGVLSACSHAGL-VEEGRCYFQSMTIEHGLVPVKDHYTCMVD 536

Query: 415 LMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474
           L+G+ G +  A  +I+ +      VVW +LL+A     ++ + +  A  +++++  +   
Sbjct: 537 LLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGP 596

Query: 475 YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           YV+L N+Y   G W     +R  MR+ G+ K+ GCSWI +++
Sbjct: 597 YVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISIQS 638



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 145/280 (51%), Gaps = 32/280 (11%)

Query: 101 YADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIG 160
           + D+  F   L  C +  S+     +H++I+K      + I N L+D+YGKCG +EDA  
Sbjct: 16  FLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARK 75

Query: 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220
           VF  M  ++  SW                               N V+  + +FG +++A
Sbjct: 76  VFDHMQQRNTFSW-------------------------------NAVLGALTKFGALDEA 104

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
           + +   MP  +  SWN++++G+  R+R  EAL    +M S+D  ++EY+F + LS  AGL
Sbjct: 105 LNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGL 164

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
             L+ G+ IH  + K      + + SAL+DMYSKC  V  A   F  +  +N+V+WN++I
Sbjct: 165 MDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLI 224

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           T Y +NG   K +E+F ++     ++PD +T  +V +AC+
Sbjct: 225 TCYEQNGPAGKALEVFVRMMNC-GIEPDEITLASVASACA 263



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 17/241 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL------SNVFVSTALMGFYRKINSL 54
           P  Y   +LL A ++L      +Q H +ILK GF       S++FV  +L+  Y K   +
Sbjct: 383 PTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLV 442

Query: 55  ADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC 114
            D   +F  + +   VSWN++I GY Q+G   +AL +F E+  S    D  +    L+AC
Sbjct: 443 EDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSAC 502

Query: 115 GQLGSLQLGMAIHSKIVKYSLERGVVIAN----CLIDMYGKCGSVEDAIGVFGEM-IDKD 169
              G ++ G      +   ++E G+V       C++D+ G+ G +++A  +   M ++ D
Sbjct: 503 SHAGLVEEGRCYFQSM---TIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPD 559

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTIS---YNEVINGIAQFGDIEDAIMILSS 226
            + W S++AA   +GN+ L      RL   D ++   Y  + N  A+ G  +D + +   
Sbjct: 560 AVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQ 619

Query: 227 M 227
           M
Sbjct: 620 M 620


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  275 bits (702), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 163/531 (30%), Positives = 282/531 (53%), Gaps = 41/531 (7%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           LH + +K G  ++VFV   L+  Y K   LA A ++F+E+     V++N+++ G  + G 
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           + +AL LF  + R+ I A  ++F+S L     +  L LG  +H+ +++ +    V + N 
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS 276

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN----GNLEL-----AFGFLHR 195
           L+D Y KC  ++D   +F EM ++D +S+N +IAA A N      L L       GF  +
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336

Query: 196 -LPNPDTISY-----------------------------NEVINGIAQFGDIEDAIMILS 225
            LP    +S                              N +I+  ++ G ++ A    S
Sbjct: 337 VLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFS 396

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           +    ++ SW +++TGYV   +  EAL LF +M+   +  D  TFS+++   + L+ +  
Sbjct: 397 NRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGL 456

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  +HS +I+ G  +S+   S L+DMY+KCG ++ A   F  +  +N ++WNA+I+ YA 
Sbjct: 457 GRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAH 516

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
            G+    I++FE +       PDSVTFL+VLAACSH  +  D+  +YF  M   Y I P 
Sbjct: 517 YGEAKNAIKMFEGMLHC-GFNPDSVTFLSVLAACSHNGLA-DECMKYFHLMKHQYSISPW 574

Query: 406 VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465
            EH   +I  +G+ G   + Q+M+ E+ F +  ++W ++L +     + ++AR++A ++ 
Sbjct: 575 KEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLF 634

Query: 466 KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            +E      YV+L N+Y   G W+ A+ ++  MR+RG+RKE+G SW+E++ 
Sbjct: 635 GMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQ 685



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 47/384 (12%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           N+F    ++  Y     L  A  +F+  P  +  +W  ++  +  +G+   AL+LF  + 
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 132

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
              +  D  + T+ L   G         ++H   +K+ L+  V + N L+D Y K G + 
Sbjct: 133 GEGVIPDRVTVTTVLNLPGCTVP-----SLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLA 187

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLPNPDT----------- 201
            A  VF EM DKD +++N+++   ++ G     L+L F  + R   P T           
Sbjct: 188 AARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQL-FAAMRRAGIPATHFTFSSILTVA 246

Query: 202 -------------------------ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
                                       N +++  ++   ++D   +   MP  ++ S+N
Sbjct: 247 AGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYN 306

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
            I+  Y         L LF EMQ          ++TMLS    L  +  G  IH+ ++  
Sbjct: 307 VIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLL 366

Query: 297 GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
           GL +  ++ +AL+DMYSKCG ++ A S F +   K+ ++W A+ITGY +NG   + ++LF
Sbjct: 367 GLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLF 426

Query: 357 EQLKTVRDLQPDSVTFLNVLAACS 380
             ++    L+PD  TF +++ A S
Sbjct: 427 SDMRRA-GLRPDRATFSSIIKASS 449



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 142/295 (48%), Gaps = 21/295 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  ++  G  S   +  AL+  Y K   L  A   F    + S +SW +LI+GYVQ+
Sbjct: 357 KQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQN 416

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G++ +AL LF ++ R+ +  D  +F+S + A   L  + LG  +HS +++   +  V   
Sbjct: 417 GQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSG 476

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF----GFLHRLPN 198
           + L+DMY KCG +++A+  F EM +++ ISWN+VI+A A  G  + A     G LH   N
Sbjct: 477 SVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFN 536

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS-SSWNSILTGYVNR-NRVPEALHLFG 256
           PD++++  V+   +  G  ++ +     M    S S W       ++   RV      F 
Sbjct: 537 PDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVG----CFS 592

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           ++Q   V   E  F            + W  ++HSC I    + + V A  L  M
Sbjct: 593 QVQKMLV---EMPFKA--------DPIIWTSILHSCRIHGNQELARVAADKLFGM 636



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 130/293 (44%), Gaps = 39/293 (13%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            Q+H  +L+S  + NVFV+ +L+ FY K + L D  ++F E+P+   VS+N +I+ Y  +
Sbjct: 256 HQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWN 315

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
                 L LF E+++         + + L+  G L  + +G  IH+++V   L    ++ 
Sbjct: 316 QCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLG 375

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
           N LIDMY KCG ++ A   F    +K  ISW ++I    +NG  E A      +      
Sbjct: 376 NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLR 435

Query: 199 PDTISYNEVING-----------------------------------IAQFGDIEDAIMI 223
           PD  +++ +I                                      A+ G +++A+  
Sbjct: 436 PDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRT 495

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
              MP  NS SWN++++ Y +      A+ +F  M       D  TF ++L+ 
Sbjct: 496 FDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAA 548



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 13/229 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      +++ASS L      +QLH Y+++SG+ S+VF  + L+  Y K   L +A + 
Sbjct: 436 PDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRT 495

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+ + +SWN++IS Y   G+ + A+ +F  +       D+ +F S LAAC   G  
Sbjct: 496 FDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLA 555

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIA 178
              M   H    +YS+        C+ID  G+ G       +  EM  K D I W S++ 
Sbjct: 556 DECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILH 615

Query: 179 ASARNGNLELA-------FGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220
           +   +GN ELA       FG    +   D   Y  + N  A+ G  EDA
Sbjct: 616 SCRIHGNQELARVAADKLFG----MEPTDATPYVILSNIYARAGQWEDA 660



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 149/343 (43%), Gaps = 41/343 (11%)

Query: 183 NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGY 242
           +G+L  A     ++P+ +  S N +++  +  GD+  A  +  S P  N+++W  ++  +
Sbjct: 56  SGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAH 115

Query: 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
               R  +AL LF  M  + V  D  T +T+L+ + G +  +    +H   IK GLD  +
Sbjct: 116 AAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLN-LPGCTVPS----LHPFAIKFGLDTHV 170

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK-- 360
            V + LLD Y K G +  A  +F  +  K+ VT+NAM+ G ++ G  T+ ++LF  ++  
Sbjct: 171 FVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRA 230

Query: 361 --------------------------TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFE 394
                                      V  L   S + LNV    S  D  F    +  +
Sbjct: 231 GIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLD--FYSKCDCLD 288

Query: 395 SMTKDYGIKPTVEHCCSMIRLMGQ-----KGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
            M + +   P  ++    + +           V R  R +++LGF    + +  +LS +G
Sbjct: 289 DMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAG 348

Query: 450 ACSDLDVARISAAEVIKLE-GDSDYVYVMLCNLYTSHGNWDVA 491
           +  D+ + +   A+++ L     D +   L ++Y+  G  D A
Sbjct: 349 SLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAA 391


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  274 bits (701), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 158/560 (28%), Positives = 285/560 (50%), Gaps = 42/560 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL A + +G     +QLH Y+LK+G   +     +L+  Y K   +  AH +
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    + +VV WN ++  Y Q     K+  +F +++ + I+ + +++   L  C   G +
Sbjct: 303 FNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQI 362

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IHS  +K   E  + ++  LIDMY K   ++ A  +   +  +D++SW S+IA  
Sbjct: 363 ELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGY 422

Query: 181 ARNGNLELAFGFLHRLPN----PDTIS--------------------------------- 203
            ++   E A      + +    PD I                                  
Sbjct: 423 VQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADI 482

Query: 204 --YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
             +N ++N  A+ G  E+A  +   +   +  +WN +++G+       +AL +F +M   
Sbjct: 483 SIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQA 542

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
               + +TF + +S +A L+ +  G  +H   +K G  +   VA+AL+ +Y KCG +E A
Sbjct: 543 GAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDA 602

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  +N V+WN +IT  +++G   + ++LF+Q+K    L+P+ VTF+ VLAACSH
Sbjct: 603 KMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQ-EGLKPNDVTFIGVLAACSH 661

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  + +S YF+SM+  YG+ P  +H   ++ ++G+ G++ RA+R + E+   +  ++W
Sbjct: 662 VGLVEEGLS-YFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIW 720

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LLSA     ++++  ++A  +++LE      YV+L N Y   G W     +R  M++R
Sbjct: 721 RTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDR 780

Query: 502 GLRKEAGCSWIEVENVAAHS 521
           G+RKE G SWIEV+N A H+
Sbjct: 781 GIRKEPGRSWIEVKN-AVHA 799



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/487 (25%), Positives = 222/487 (45%), Gaps = 45/487 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  YVL  +L A +        + +H  + K  F S  FV  AL+  Y    S   A ++
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERV 201

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++     V++N+LISG+ Q G    AL +F E++ S +  D  +  S LAAC  +G L
Sbjct: 202 FCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDL 261

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           Q G  +HS ++K  +    +    L+D+Y KCG +E A  +F      +++ WN ++ A 
Sbjct: 262 QKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAY 321

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIE------------------ 218
            +  +L  +F    ++     +P+  +Y  ++      G IE                  
Sbjct: 322 GQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDM 381

Query: 219 -----------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                             A  IL  +   +  SW S++ GYV  +   EAL  F EMQ  
Sbjct: 382 YVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDC 441

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  D    ++  S  AG+ A+  G+ IH+ V   G  A I + + L+++Y++CG+ E A
Sbjct: 442 GVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEA 501

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            S+FR +  K+ +TWN +I+G+ ++    + + +F ++      + +  TF++ ++A ++
Sbjct: 502 FSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQA-GAKYNVFTFISAISALAN 560

Query: 382 -TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
             DI   K  +         G     E   ++I L G+ G +  A+ +  E+   +  V 
Sbjct: 561 LADI---KQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNE-VS 616

Query: 441 WRALLSA 447
           W  ++++
Sbjct: 617 WNTIITS 623



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/465 (21%), Positives = 205/465 (44%), Gaps = 43/465 (9%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           ++H   +  G  ++  +   L+  Y K   +  A ++F E+     VSW +++SGY Q G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
             ++A  L+ ++  + +    Y  +S L+AC +      G  IH+++ K +      + N
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGN 183

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NP 199
            LI +Y   GS + A  VF +M+  D +++N++I+  A+ G+ E A      +      P
Sbjct: 184 ALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRP 243

Query: 200 DTISYNEVINGIA-----------------------------------QFGDIEDAIMIL 224
           D ++   ++   A                                   + GDIE A  I 
Sbjct: 244 DCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF 303

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
           +     N   WN +L  Y   + + ++  +FG+MQ+  +  +++T+  +L        + 
Sbjct: 304 NLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIE 363

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  IHS  IK G ++ + V+  L+DMYSK   ++ A  +   L ++++V+W +MI GY 
Sbjct: 364 LGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYV 423

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           ++    + +  F++++    + PD++   +  +AC+        +  +       Y    
Sbjct: 424 QHDFCEEALATFKEMQDC-GVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADI 482

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
           ++ +  +++ L  + G    A  + RE+      + W  L+S  G
Sbjct: 483 SIWN--TLVNLYARCGRSEEAFSLFREIDHKDE-ITWNGLISGFG 524



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 141/316 (44%), Gaps = 41/316 (12%)

Query: 107 FTSALAAC-GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
            T AL AC G+     L + IH+  V   L    +I N LID+Y K G V  A  VF E+
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKEL 104

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRL------PNP-------------------- 199
             +D +SW ++++  A+ G  + AF    ++      P P                    
Sbjct: 105 SSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGR 164

Query: 200 -------------DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246
                        +T   N +I     FG  + A  +   M   +  ++N++++G+    
Sbjct: 165 MIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCG 224

Query: 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
               AL +F EMQ   +  D  T +++L+  A +  L  G  +HS ++K G+    +   
Sbjct: 225 HGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEG 284

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
           +LLD+Y KCG +E A  +F    R N+V WN M+  Y +  DL K  E+F Q++    + 
Sbjct: 285 SLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQAT-GIH 343

Query: 367 PDSVTFLNVLAACSHT 382
           P+  T+  +L  C+ T
Sbjct: 344 PNKFTYPCILRTCTCT 359


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  274 bits (701), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 158/517 (30%), Positives = 276/517 (53%), Gaps = 5/517 (0%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N Y+  HLL A       T  +++H + LK+   ++  V   L   Y   N +  A ++F
Sbjct: 9   NNYL--HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            EIP PSV+ WN +I  Y  +G +  A++L+  +    +  + Y++   L AC  L +++
Sbjct: 67  DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G+ IHS    + LE  V +   L+D Y KCG + +A  +F  M  +D+++WN++IA  +
Sbjct: 127 DGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 182 RNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD-IEDAIMILSSMPSPNSSSWNSILT 240
             G  + A   + ++        +  I G+      +  A  I   M   N  SW++++ 
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIG 246

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GYV  + + EAL +F  MQ   +  D  T   +L   + L+AL  G   H  +I +G   
Sbjct: 247 GYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFAT 306

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
             ++ +AL+DMYSKCG++  A  +F  + R ++V+WNAMI GY  +G   + + LF  L 
Sbjct: 307 DTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLL 366

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
            +  L+PD +TF+ +L++CSH+ +  +    +F++M++D+ I P +EHC  M+ ++G+ G
Sbjct: 367 AL-GLKPDDITFICLLSSCSHSGLVMEG-RLWFDAMSRDFSIVPRMEHCICMVDILGRAG 424

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
            +  A   IR + F     +W ALLSA     ++++    + ++  L  +S   +V+L N
Sbjct: 425 LIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSN 484

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           +Y++ G WD A+ +R   ++ GL+K  GCSWIE+  +
Sbjct: 485 IYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGI 521


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  274 bits (701), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 161/555 (29%), Positives = 286/555 (51%), Gaps = 41/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  Y   +LL+   D       +++H  ++KSGF  ++F  T L   Y K   + +A K+
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKV 192

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+  +VSWN++++GY Q+G  R AL +   +    +     +  S L A   L  +
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLI 252

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           ++G  IH   ++   +  V IA  L+DMY KCGS++ A  +F  M++++++SWNS+I A 
Sbjct: 253 RIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAY 312

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIE------------------ 218
            +N N + A     ++ +    P  +S    ++  A  GD+E                  
Sbjct: 313 VQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNV 372

Query: 219 -----------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                             A  +   + S    SWN+++ G+    R  EAL+ F +MQ++
Sbjct: 373 SVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQAR 432

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  D +T+ ++++ IA LS       IH  V++  LD ++ V +AL+DMY+KCG + IA
Sbjct: 433 TVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIA 492

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  +++ TWNAMI GY  +G     +ELFE+++    ++P+ VTFL+V++ACSH
Sbjct: 493 RLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQK-GTIRPNGVTFLSVISACSH 551

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           + +  +   + F  M ++Y I+P+++H  +M+ L+G+ G +  A   I ++       V+
Sbjct: 552 SGL-VEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVY 610

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            A+L A     +++ A   A  + +L  +    +V+L N+Y +   W+    +R  M  +
Sbjct: 611 GAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQ 670

Query: 502 GLRKEAGCSWIEVEN 516
           GLRK  GCS +E++N
Sbjct: 671 GLRKTPGCSMVEIKN 685



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 185/395 (46%), Gaps = 40/395 (10%)

Query: 29  ILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKA 88
           I K+G        T L+  + +  S+ +A ++F  I +   V + +++ G+ +     KA
Sbjct: 60  IFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKA 119

Query: 89  LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
           L  FV +   E+    Y+FT  L  CG    L++G  IH  +VK      +     L +M
Sbjct: 120 LKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENM 179

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISY 204
           Y KC  V +A  VF  M ++D++SWN+++A  ++NG   +A   ++ +      P  I+ 
Sbjct: 180 YAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITI 239

Query: 205 NEVINGI-----------------------------------AQFGDIEDAIMILSSMPS 229
             V+  +                                   A+ G ++ A ++   M  
Sbjct: 240 VSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLE 299

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            N  SWNS++  YV      EA+ +F +M  + V   + +    L   A L  L  G  I
Sbjct: 300 RNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFI 359

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H   ++  LD ++ V ++L+ MY KC +V+ A SMF  L  + +V+WNAMI G+A+NG  
Sbjct: 360 HKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRP 419

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
            + +  F Q++  R ++PD+ T+++V+ A +   I
Sbjct: 420 IEALNYFSQMQA-RTVKPDTFTYVSVITAIAELSI 453


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  274 bits (701), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 160/534 (29%), Positives = 281/534 (52%), Gaps = 47/534 (8%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           ++HC  LK GF+ +V+V+ +L+  Y +  ++ +A  +F E+P   + SWN++ISGY QSG
Sbjct: 171 KIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSG 230

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
             ++AL L   L       D+ +  S L+AC + G    G+ IHS  +K+ LE  + ++N
Sbjct: 231 NAKEALTLSNGLRA----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSN 286

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NP 199
            LID+Y + G + D   VF  M  +D+ISWNS+I A   N     A      +      P
Sbjct: 287 KLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQP 346

Query: 200 DTISYNEVINGIAQFGDI------------------------------------EDAIMI 223
           D ++   + + ++Q GDI                                    + A  +
Sbjct: 347 DCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAV 406

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK-DVPMDEYTFSTMLSGIAGLSA 282
            + +P+ +  SWN+I++GY       EA+ ++  M+ + ++  ++ T+ ++L   +   A
Sbjct: 407 FNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGA 466

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  GM +H  ++K GL   + V ++L DMY KCG++E A S+F  + R N V WN +I  
Sbjct: 467 LRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIAC 526

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           +  +G   K + LF+++     ++PD +TF+ +L+ACSH+ +  D+    FE M  DYGI
Sbjct: 527 HGFHGHGEKAVMLFKEMLD-EGVKPDHITFVTLLSACSHSGL-VDEGQWCFEMMQTDYGI 584

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
            P+++H   M+ + G+ G++  A + I+ +       +W ALLSA     ++D+ +I++ 
Sbjct: 585 TPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASE 644

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            + ++E +    +V+L N+Y S G W+    +R+    +GLRK  G S +EV+N
Sbjct: 645 HLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDN 698



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 188/394 (47%), Gaps = 40/394 (10%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           LH  ++ S  + NV +S  L+  Y  + ++A A   F  I    V +WN +ISGY ++G 
Sbjct: 73  LHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGN 132

Query: 85  YRKALNLF-VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
             + +  F + +  S +  D  +F S L AC  +     G  IH   +K+     V +A 
Sbjct: 133 SSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAA 189

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS 203
            LI +Y +  +V +A  +F EM  +D+ SWN++I+   ++GN + A    + L   D+++
Sbjct: 190 SLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVT 249

Query: 204 Y-----------------------------------NEVINGIAQFGDIEDAIMILSSMP 228
                                               N++I+  A+FG + D   +   M 
Sbjct: 250 VVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMY 309

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             +  SWNSI+  Y    +   A+ LF EM+   +  D  T  ++ S ++ L  +     
Sbjct: 310 VRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRS 369

Query: 289 IHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
           +    +++G     I + +A++ MY+K G V+ A ++F  L   ++++WN +I+GYA+NG
Sbjct: 370 VQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNG 429

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             ++ IE++  ++   ++  +  T+++VL ACS 
Sbjct: 430 FASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQ 463



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/448 (24%), Positives = 196/448 (43%), Gaps = 63/448 (14%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           LL A ++ G       +H Y +K G  S +FVS  L+  Y +   L D  K+F  +    
Sbjct: 253 LLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRD 312

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           ++SWNS+I  Y  + +  +A++LF E+  S I  D  +  S  +   QLG ++   ++  
Sbjct: 313 LISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQG 372

Query: 129 KIVKYSLERG-----VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
               ++L +G     + I N ++ MY K G V+ A  VF  + + D+ISWN++I+  A+N
Sbjct: 373 ----FTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQN 428

Query: 184 GNLELAFGFLHRLPNPDTISYNE------------------------------------V 207
           G    A    + +     I+ N+                                    V
Sbjct: 429 GFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFV 488

Query: 208 INGIAQF----GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
           +  +A      G +EDA+ +   +P  NS  WN+++  +       +A+ LF EM  + V
Sbjct: 489 VTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGV 548

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCV-IKQGLDASIVVASALLDMYSKCGQVEIAD 322
             D  TF T+LS  +    +  G      +    G+  S+     ++DMY + GQ+E A 
Sbjct: 549 KPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETAL 608

Query: 323 SMFRSLC-RKNLVTWNAMITGYARNG--DLTKVI--ELFEQLKTVRDLQPDSVTFLNVLA 377
              +S+  + +   W A+++    +G  DL K+    LFE       ++P+ V +  +L+
Sbjct: 609 KFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFE-------VEPEHVGYHVLLS 661

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPT 405
               +   ++ V E   S+    G++ T
Sbjct: 662 NMYASAGKWEGVDE-IRSIAHGKGLRKT 688



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 2/190 (1%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N+     +L A S  G      +LH  +LK+G   +VFV T+L   Y K   L DA  +F
Sbjct: 450 NQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLF 509

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            +IP+ + V WN+LI+ +   G   KA+ LF E+    +  D  +F + L+AC   G + 
Sbjct: 510 YQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVD 569

Query: 122 LGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
            G      +   Y +   +    C++DMYG+ G +E A+     M +  D   W ++++A
Sbjct: 570 EGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSA 629

Query: 180 SARNGNLELA 189
              +GN++L 
Sbjct: 630 CRVHGNVDLG 639



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 6/159 (3%)

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           +H+ ++      ++ +++ L+++Y   G V +A   F  +  +++  WN MI+GY R G+
Sbjct: 73  LHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGN 132

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
            ++VI  F        L PD  TF +VL AC  T I  +K+      +   +G    V  
Sbjct: 133 SSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC-RTVIDGNKI----HCLALKFGFMWDVYV 187

Query: 409 CCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
             S+I L  +   V  A+ +  E+     G  W A++S 
Sbjct: 188 AASLIHLYSRYKAVGNARILFDEMPVRDMG-SWNAMISG 225


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  274 bits (700), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 163/522 (31%), Positives = 270/522 (51%), Gaps = 40/522 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N+Y     L A S L       Q+H  I KS +  +VF+ + L+ FY K   +  A ++F
Sbjct: 155 NDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVF 214

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             + + +VVSWN LI+ Y Q+G   +AL  F  +       D  +  S ++AC  L + +
Sbjct: 215 DGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFK 274

Query: 122 LGMAIHSKIVKYSLERG-VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            G+ IH+++VK    R  +++ N L+DMY KCG V +A  VF                  
Sbjct: 275 EGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFD----------------- 317

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                         R+P  + +S   +++G A+   ++ A  + +++   +  SWN+++ 
Sbjct: 318 --------------RMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIA 363

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL-- 298
           GY       EAL LF  ++ + V    YTF  +L+  A L+ L  G   HS V+K G   
Sbjct: 364 GYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRF 423

Query: 299 ----DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
               +  I V ++L+DMY KCG VE    +F ++  K+ V+WN MI GYA+NG   + +E
Sbjct: 424 QSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALE 483

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
           LF+++    + +PD VT +  L ACSH  +  ++   YF SMTK++G+ P  +H   M+ 
Sbjct: 484 LFQKMLESGE-KPDHVTMIGTLCACSHAGL-VEEGRRYFFSMTKEHGLLPVKDHYTCMVD 541

Query: 415 LMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474
           L+G+ G +  A+ +I  +      VVW +LLSA     ++ + +  A ++ +++  S   
Sbjct: 542 LLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGP 601

Query: 475 YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           YV+L N+Y+  G W  A  +R  MR RG+ K+ GCSWI++++
Sbjct: 602 YVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQS 643



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 140/281 (49%), Gaps = 32/281 (11%)

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159
            + D+  F   L  C +L S +   ++H ++++      V I N LID+YGKCG ++ A 
Sbjct: 20  FFTDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYAR 79

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIED 219
            VF  M ++++                                S+N +I+ + ++G +++
Sbjct: 80  KVFDRMSERNVF-------------------------------SFNSIISTLMRWGFVDE 108

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
           +  + S MP  +  SWNS++ G+   +R  EAL  F  M   D  +++Y+F + LS  + 
Sbjct: 109 SAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSR 168

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
           L  L  G  IH  + K      + + S L+D YSKCG V  A  +F  +  KN+V+WN +
Sbjct: 169 LKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCL 228

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           IT Y +NG   + +E F ++ T    +PD VT  +V++AC+
Sbjct: 229 ITCYEQNGPAIEALEAFGRM-TELGFKPDEVTLASVVSACA 268



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 114/241 (47%), Gaps = 17/241 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL------SNVFVSTALMGFYRKINSL 54
           P  Y   +LL AS++L      +Q H +++K GF        ++FV  +L+  Y K  S+
Sbjct: 388 PTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSV 447

Query: 55  ADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC 114
            +  ++F  + +   VSWN++I GY Q+G   +AL LF ++  S    D  +    L AC
Sbjct: 448 EEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCAC 507

Query: 115 GQLGSLQLGMAIHSKIVKYSLERGVVIAN----CLIDMYGKCGSVEDAIGVFGEMIDK-D 169
              G ++ G      + K   E G++       C++D+ G+ G +E+A  +   M  + D
Sbjct: 508 SHAGLVEEGRRYFFSMTK---EHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPD 564

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTIS---YNEVINGIAQFGDIEDAIMILSS 226
            + W+S+++A   + N+ L      ++   D  S   Y  + N  ++ G   DA+ +   
Sbjct: 565 AVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKL 624

Query: 227 M 227
           M
Sbjct: 625 M 625



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/134 (20%), Positives = 65/134 (48%), Gaps = 6/134 (4%)

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           D   F+ +L     L +      +H  +I+      + + + L+D+Y KCG ++ A  +F
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
             +  +N+ ++N++I+   R G + +   LF  +      + D  ++ +++A  +  D  
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMP-----EKDQCSWNSMIAGFAQHD-R 136

Query: 386 FDKVSEYFESMTKD 399
           F++  ++F  M +D
Sbjct: 137 FEEALDWFVRMHRD 150


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  274 bits (700), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 176/586 (30%), Positives = 286/586 (48%), Gaps = 74/586 (12%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
            E ++  LLR    +   +  QQLH  +LK    S++   + L+  Y  IN L D+ ++F
Sbjct: 5   TEALVKALLRNPLSIKSRSQAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLF 63

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             I  P  ++W S+I  Y   G   ++L  F+ +  S +Y D   F S L +C  L  L 
Sbjct: 64  NTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLN 123

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGK-------------CGSV------------- 155
           LG ++H  I++  L+  +   N L++MY K              G V             
Sbjct: 124 LGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRT 183

Query: 156 -----EDAI-GVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYN 205
                ED++  +F  M +KD++SWN++IA +ARNG  E     +  +      PD+ + +
Sbjct: 184 VSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLS 243

Query: 206 EVINGIAQFGDIE-----------------------------------DAIMILSSMPSP 230
            V+  IA+  DI                                    D+  + + +   
Sbjct: 244 SVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTER 303

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
           +  SWNSI+ G V      E L  F +M    +    Y+FS+++   A L+ L  G  +H
Sbjct: 304 DGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLH 363

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
             + + G D +I +AS+L+DMY+KCG +  A  +F  +  +++V+W AMI G A +G   
Sbjct: 364 GYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAP 423

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
             IELFEQ++T   ++P+ V F+ VL ACSH  +  D+  +YF SMT+D+GI P VEH  
Sbjct: 424 DAIELFEQMET-EGIKPNHVAFMAVLTACSHGGL-VDEAWKYFNSMTRDFGIAPGVEHYA 481

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
           ++  L+G+ G +  A   I  +  G  G +W  LLSA     ++D+A   A  +++++ +
Sbjct: 482 AVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPN 541

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +   Y++L N+Y++   W  A+  R  MR  G+RK   CSWIEV+N
Sbjct: 542 NTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKN 587



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 98/202 (48%), Gaps = 2/202 (0%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  Y    ++ A + L      +QLH YI ++GF  N+F++++L+  Y K  ++  A ++
Sbjct: 338 PKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQI 397

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    +VSW ++I G    G+   A+ LF ++E   I  +  +F + L AC   G +
Sbjct: 398 FDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLV 457

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIG-VFGEMIDKDIISWNSVIA 178
                  + + + + +  GV     + D+ G+ G +E+A   + G  I      W ++++
Sbjct: 458 DEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLS 517

Query: 179 ASARNGNLELAFGFLHRLPNPD 200
           A   + N+++A    +R+   D
Sbjct: 518 ACRVHXNIDMAEKVANRILEVD 539


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  274 bits (700), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 151/520 (29%), Positives = 269/520 (51%), Gaps = 38/520 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      LL + +        +++H +I + G  +++ V+ AL+  Y K NS+ +A ++
Sbjct: 256 PNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREI 315

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRK-----ALNLFVELERSEIYADAYSFTSALAACG 115
           F  + +  V+SW+++I+GY QSG   K        L   + R  ++ +  +F S L AC 
Sbjct: 316 FDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACT 375

Query: 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175
             G+L+ G  IH+++ K   E    +   + +MY KCGS+ +A  VF +M +K++++W S
Sbjct: 376 AHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTS 435

Query: 176 VIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSW 235
            ++   +                                GD+  A  + S MP+ N  SW
Sbjct: 436 FLSMYIK-------------------------------CGDLSSAEKVFSEMPTRNVVSW 464

Query: 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
           N ++ GY     + +   L   M+++    D  T  T+L     L+ L  G L+H+  +K
Sbjct: 465 NLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVK 524

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
            GL++  VVA++L+ MYSKCGQV  A ++F  +  ++ V WNAM+ GY ++GD  + ++L
Sbjct: 525 LGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDL 584

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415
           F+++   R + P+ +T   V++ACS   +   +  E F  M +D+ + P  +H   M+ L
Sbjct: 585 FKRMLKER-VSPNEITLTAVISACSRAGL-VQEGREIFRMMQEDFKMTPRKQHYGCMVDL 642

Query: 416 MGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475
           +G+ G +  A+  I+ +       VW ALL A  + +++ +A  +A  +++LE     VY
Sbjct: 643 LGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVY 702

Query: 476 VMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           + L N+Y   G WD ++ +R  M +RGL+K+ G S IE++
Sbjct: 703 ITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEID 742



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 123/506 (24%), Positives = 220/506 (43%), Gaps = 79/506 (15%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H  + + G   ++++  +L+ FY K   +A A ++F  +    VV+W+S+I+ Y  +
Sbjct: 76  KMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGN 135

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
               KA + F  +  + I  +  +F S L AC     L+ G  IH+ +    +E  V +A
Sbjct: 136 NHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVA 195

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------ 196
             LI MY KCG +  A  VF +M +++++SW ++I A+A++  L  AF    ++      
Sbjct: 196 TALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGIS 255

Query: 197 PNP---------------------------------DTISYNEVINGIAQFGDIEDAIMI 223
           PN                                  D I  N +I    +   +++A  I
Sbjct: 256 PNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREI 315

Query: 224 LSSMPSPNSSSWNSILTGYV-----NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
              M   +  SW++++ GY      ++  + E   L   M+ + V  ++ TF ++L    
Sbjct: 316 FDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACT 375

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK------- 331
              AL  G  IH+ + K G +    + +A+ +MY+KCG +  A+ +F  +  K       
Sbjct: 376 AHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTS 435

Query: 332 ------------------------NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
                                   N+V+WN MI GYA+NGD+ KV EL   +K     QP
Sbjct: 436 FLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMK-AEGFQP 494

Query: 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQR 427
           D VT + +L AC    +   +  +   +     G++       S+I +  + G+V  A+ 
Sbjct: 495 DRVTVITILEACG--ALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEART 552

Query: 428 MIRELGFGSYGVVWRALLSASGACSD 453
           +  ++      V W A+L+  G   D
Sbjct: 553 VFDKMS-NRDTVAWNAMLAGYGQHGD 577



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 206/438 (47%), Gaps = 47/438 (10%)

Query: 63  EIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQL 122
           E+  P+ VS   +     ++G+ R+A+ L   +++  +  ++ ++   +  C +    + 
Sbjct: 16  ELDGPTSVSGGEVWR-LCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFED 74

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR 182
           G  +H ++ +  +E  + + N LI+ Y K   V  A  VF  M  +D+++W+S+IAA A 
Sbjct: 75  GKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAG 134

Query: 183 NGNLELAFGFLHRLPN----PDTISYNEVINGIAQF------------------------ 214
           N +   AF    R+ +    P+ I++  ++     +                        
Sbjct: 135 NNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAV 194

Query: 215 -----------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
                      G+I  A  +   M   N  SW +I+       ++ EA  L+ +M    +
Sbjct: 195 ATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGI 254

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             +  TF ++L+      AL  G  IHS + ++GL+  ++VA+AL+ MY KC  V+ A  
Sbjct: 255 SPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEARE 314

Query: 324 MFRSLCRKNLVTWNAMITGYARNG--DLTKVIELFEQLKTVRD--LQPDSVTFLNVLAAC 379
           +F  + ++++++W+AMI GYA++G  D   + E+F+ L+ +R   + P+ VTF+++L AC
Sbjct: 315 IFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRAC 374

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +      ++  +    ++K  G +       ++  +  + G ++ A+++  ++   +  V
Sbjct: 375 T-AHGALEQGRQIHAELSK-VGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNV-V 431

Query: 440 VWRALLSASGACSDLDVA 457
            W + LS    C DL  A
Sbjct: 432 AWTSFLSMYIKCGDLSSA 449


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 162/544 (29%), Positives = 281/544 (51%), Gaps = 49/544 (9%)

Query: 15   DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNS 74
            DLG     +Q+H  ++KS F   V VS +LM  Y K   +  A K F+  P+  ++SWN+
Sbjct: 911  DLG-----EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNT 965

Query: 75   LISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC--GQLGS-LQLGMAIHSKIV 131
            +IS Y Q+    +A+  F +L R  +  D ++  S L AC  G  G    LG  +H   +
Sbjct: 966  MISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAI 1025

Query: 132  KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA-- 189
            K  +     ++  LID+Y K G +++A  +     D D+ SWN+++    ++     A  
Sbjct: 1026 KCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALE 1085

Query: 190  -FGFLHRLPNP-DTIS----------------------------YNE-------VINGIA 212
             F  +H +  P D I+                            +N        V++   
Sbjct: 1086 HFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYI 1145

Query: 213  QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
            + GD+ +A+ +   +  P+  +W ++++GY+       AL ++  M+   V  DEYTF+T
Sbjct: 1146 KCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFAT 1205

Query: 273  MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332
            ++   + L+AL  G  IH+ V+K        V ++L+DMY KCG V+ A  +FR +  + 
Sbjct: 1206 LIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK 1265

Query: 333  LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
            +V WNAM+ G A++G + + + LF  +++   +QPD VTF+ VL+ACSH+ + F +  +Y
Sbjct: 1266 VVFWNAMLLGLAQHGHVDEALNLFRTMQS-NGIQPDKVTFIGVLSACSHSGL-FSEAYKY 1323

Query: 393  FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
            F++M K YGI P +EH   ++  +G+ G +  A+ +I  + F +   ++RALL A     
Sbjct: 1324 FDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKG 1383

Query: 453  DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
            D + A+  A +++ L+      YV+L N+Y +   WD  +  RN M+ + ++K+ G SWI
Sbjct: 1384 DAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWI 1443

Query: 513  EVEN 516
            +V+N
Sbjct: 1444 DVKN 1447



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 181/403 (44%), Gaps = 44/403 (10%)

Query: 1    PNEYVLFHLLRASS--DLG-WDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
            P+++ L  +LRA S  D G + T   Q+H Y +K G +++ FVSTAL+  Y K   + +A
Sbjct: 993  PDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052

Query: 58   HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
              +        + SWN+++ GY++S K RKAL  F  +    I  D  +  +A+ A G L
Sbjct: 1053 EFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCL 1112

Query: 118  GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
             +L+ G  I +  +K      + +++ ++DMY KCG + +A+ +FGE+   D ++W ++I
Sbjct: 1113 INLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMI 1172

Query: 178  AASARNGNLELAFGFLHRLP----NPDTISYNEVINGIA--------------------- 212
            +    NG+ + A    H +      PD  ++  +I   +                     
Sbjct: 1173 SGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYS 1232

Query: 213  --------------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
                          + G ++DA  +   M       WN++L G      V EAL+LF  M
Sbjct: 1233 LDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTM 1292

Query: 259  QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQ 317
            QS  +  D+ TF  +LS  +     +        + K  G+   I   S L+D   + G+
Sbjct: 1293 QSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGR 1352

Query: 318  VEIADSMFRSLCRKNLVTWNAMITGYAR-NGDLTKVIELFEQL 359
            ++ A+++  S+  K   +    + G  R  GD      + ++L
Sbjct: 1353 IQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKL 1395



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 114/405 (28%), Positives = 183/405 (45%), Gaps = 33/405 (8%)

Query: 23   QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ- 81
            ++ H  I+ SG L + +++  L+  Y K  SL  A ++F +     +V+WNS+++ Y Q 
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQF 690

Query: 82   -SGKYRKALN---LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER 137
                Y   L    LF  L          +    L  C   G +Q+   +H   VK   E 
Sbjct: 691  ADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFEL 750

Query: 138  GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL---H 194
             + ++  L+++Y K G V  A  +F +M ++D + WN ++ A   N   + A  F    H
Sbjct: 751  DLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFH 810

Query: 195  RLP-NPDTISYNEVINGIAQFGDIED------------AIMILSSMPSPNSSSWNSILTG 241
            R    PD  + + VI G+    D+ +            A+ +       N  +WN  LT 
Sbjct: 811  RSGFXPDFSNLHCVIGGVNS--DVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTE 868

Query: 242  YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
            +++  ++  A+  F  +    +  D  T   +LS   G   L  G  IH+ VIK      
Sbjct: 869  FLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPV 928

Query: 302  IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
            + V+++L++MYSK G V  A+  F +    +L++WN MI+ YA+N    + I  F  L  
Sbjct: 929  VPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDL-- 986

Query: 362  VRD-LQPDSVTFLNVLAACSHTDIPFDKVSEYFE--SMTKDYGIK 403
            +RD L+PD  T  +VL ACS  D       EYF   S    Y IK
Sbjct: 987  LRDGLKPDQFTLASVLRACSTGD-----EGEYFTLGSQVHVYAIK 1026



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 168/362 (46%), Gaps = 27/362 (7%)

Query: 17   GWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLI 76
            G+    + +H Y +K GF  ++FVS AL+  Y K   +  A  +F ++P+   V WN ++
Sbjct: 731  GFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVML 790

Query: 77   SGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS-LQLGMAIHSKIVK--- 132
              YV++    +AL  F    RS    D   F++     G + S +      H++ VK   
Sbjct: 791  KAYVENSFQDEALRFFSAFHRSGFXPD---FSNLHCVIGGVNSDVSNNRKRHAEQVKAYA 847

Query: 133  ---YSLERGVVIA--NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV---IAASARNG 184
               +  ++G  I   N  +  +   G +  AI  F  ++ +  I  +SV   I  SA  G
Sbjct: 848  MKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLL-RSTIGHDSVTLVIILSAAVG 906

Query: 185  NLELAFG-FLHRLP-----NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
              +L  G  +H L       P     N ++N  ++ G +  A     + P  +  SWN++
Sbjct: 907  ADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTM 966

Query: 239  LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML----SGIAGLSALTWGMLIHSCVI 294
            ++ Y   N   EA+  F ++    +  D++T +++L    +G  G    T G  +H   I
Sbjct: 967  ISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEG-EYFTLGSQVHVYAI 1025

Query: 295  KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
            K G+     V++AL+D+YSK G+++ A+ +       +L +WNA++ GY ++    K +E
Sbjct: 1026 KCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALE 1085

Query: 355  LF 356
             F
Sbjct: 1086 HF 1087


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 162/522 (31%), Positives = 275/522 (52%), Gaps = 40/522 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NEY     L A + L       Q+H  I KS +L +V++ +AL+  Y K   +A A + F
Sbjct: 150 NEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAF 209

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +   ++VSWNSLI+ Y Q+G   KAL +FV +  + +  D  +  S ++AC    +++
Sbjct: 210 DGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIR 269

Query: 122 LGMAIHSKIVKYSLERG-VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            G+ IH+++VK    R  +V+ N L+DMY KC  V +A  VF                  
Sbjct: 270 EGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFD----------------- 312

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                         R+P  + +S   ++ G A+   ++ A ++ S+M   N  SWN+++ 
Sbjct: 313 --------------RMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIA 358

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL-- 298
           GY       EA+ LF  ++ + +    YTF  +L+  A L+ L  G   H+ ++K G   
Sbjct: 359 GYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWF 418

Query: 299 ----DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
               ++ I V ++L+DMY KCG VE    +F  +  +++V+WNAMI GYA+NG  T  +E
Sbjct: 419 QSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALE 478

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
           +F ++  V   +PD VT + VL+ACSH  +  ++   YF SM  + G+ P  +H   M+ 
Sbjct: 479 IFRKM-LVSGQKPDHVTMIGVLSACSHAGL-VEEGRRYFHSMRTELGLAPMKDHFTCMVD 536

Query: 415 LMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474
           L+G+ G +  A  +I+ +      VVW +LL+A     ++++ +  A ++++++  +   
Sbjct: 537 LLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGP 596

Query: 475 YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           YV+L N+Y   G W     +R  MR+RG+ K+ GCSWIE+++
Sbjct: 597 YVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEIQS 638



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 149/280 (53%), Gaps = 32/280 (11%)

Query: 101 YADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIG 160
           + D+  F   L +C +  S      IH++I+K      + I N L+D YGKCG  EDA  
Sbjct: 16  FLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARK 75

Query: 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220
           VF                                R+P  +T SYN V++ + +FG +++A
Sbjct: 76  VFD-------------------------------RMPQRNTFSYNAVLSVLTKFGKLDEA 104

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             +  SMP P+  SWN++++G+   +R  EAL  F +M S+D  ++EY+F + LS  AGL
Sbjct: 105 FNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGL 164

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           + L  G+ IH+ + K      + + SAL+DMYSKCG V  A   F  +  +N+V+WN++I
Sbjct: 165 TDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLI 224

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           T Y +NG   K +E+F  +     ++PD +T  +V++AC+
Sbjct: 225 TCYEQNGPAGKALEVFVMMMD-NGVEPDEITLASVVSACA 263



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 112/238 (47%), Gaps = 11/238 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL------SNVFVSTALMGFYRKINSL 54
           P  Y   +LL A ++L      +Q H  ILK GF       S++FV  +L+  Y K   +
Sbjct: 383 PTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMV 442

Query: 55  ADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC 114
            D   +F  + +  VVSWN++I GY Q+G    AL +F ++  S    D  +    L+AC
Sbjct: 443 EDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSAC 502

Query: 115 GQLGSLQLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIIS 172
              G ++ G    HS   +  L        C++D+ G+ G +++A  +   M +  D + 
Sbjct: 503 SHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVV 562

Query: 173 WNSVIAASARNGNLELAFGFLHRLPNPDTIS---YNEVINGIAQFGDIEDAIMILSSM 227
           W S++AA   +GN+EL      +L   D ++   Y  + N  A+ G  +D + +   M
Sbjct: 563 WGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQM 620


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 162/544 (29%), Positives = 281/544 (51%), Gaps = 49/544 (9%)

Query: 15   DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNS 74
            DLG     +Q+H  ++KS F   V VS +LM  Y K   +  A K F+  P+  ++SWN+
Sbjct: 911  DLG-----EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNT 965

Query: 75   LISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC--GQLGS-LQLGMAIHSKIV 131
            +IS Y Q+    +A+  F +L R  +  D ++  S L AC  G  G    LG  +H   +
Sbjct: 966  MISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAI 1025

Query: 132  KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA-- 189
            K  +     ++  LID+Y K G +++A  +     D D+ SWN+++    ++     A  
Sbjct: 1026 KCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALE 1085

Query: 190  -FGFLHRLPNP-DTIS----------------------------YNE-------VINGIA 212
             F  +H +  P D I+                            +N        V++   
Sbjct: 1086 HFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYI 1145

Query: 213  QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
            + GD+ +A+ +   +  P+  +W ++++GY+       AL ++  M+   V  DEYTF+T
Sbjct: 1146 KCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFAT 1205

Query: 273  MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332
            ++   + L+AL  G  IH+ V+K        V ++L+DMY KCG V+ A  +FR +  + 
Sbjct: 1206 LIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK 1265

Query: 333  LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
            +V WNAM+ G A++G + + + LF  +++   +QPD VTF+ VL+ACSH+ + F +  +Y
Sbjct: 1266 VVFWNAMLLGLAQHGHVDEALNLFRTMQS-NGIQPDKVTFIGVLSACSHSGL-FSEAYKY 1323

Query: 393  FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
            F++M K YGI P +EH   ++  +G+ G +  A+ +I  + F +   ++RALL A     
Sbjct: 1324 FDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKG 1383

Query: 453  DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
            D + A+  A +++ L+      YV+L N+Y +   WD  +  RN M+ + ++K+ G SWI
Sbjct: 1384 DAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWI 1443

Query: 513  EVEN 516
            +V+N
Sbjct: 1444 DVKN 1447



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 181/403 (44%), Gaps = 44/403 (10%)

Query: 1    PNEYVLFHLLRASS--DLG-WDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
            P+++ L  +LRA S  D G + T   Q+H Y +K G +++ FVSTAL+  Y K   + +A
Sbjct: 993  PDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052

Query: 58   HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
              +        + SWN+++ GY++S K RKAL  F  +    I  D  +  +A+ A G L
Sbjct: 1053 EFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCL 1112

Query: 118  GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
             +L+ G  I +  +K      + +++ ++DMY KCG + +A+ +FGE+   D ++W ++I
Sbjct: 1113 INLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMI 1172

Query: 178  AASARNGNLELAFGFLHRLP----NPDTISYNEVINGIA--------------------- 212
            +    NG+ + A    H +      PD  ++  +I   +                     
Sbjct: 1173 SGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYS 1232

Query: 213  --------------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
                          + G ++DA  +   M       WN++L G      V EAL+LF  M
Sbjct: 1233 LDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTM 1292

Query: 259  QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQ 317
            QS  +  D+ TF  +LS  +     +        + K  G+   I   S L+D   + G+
Sbjct: 1293 QSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGR 1352

Query: 318  VEIADSMFRSLCRKNLVTWNAMITGYAR-NGDLTKVIELFEQL 359
            ++ A+++  S+  K   +    + G  R  GD      + ++L
Sbjct: 1353 IQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKL 1395



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 181/405 (44%), Gaps = 33/405 (8%)

Query: 23   QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ- 81
            ++ H  I+ SG L + +++  L+  Y K  SL  A ++F +     +V+WNS+++ Y Q 
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQF 690

Query: 82   -SGKYRKALN---LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER 137
                Y   L    LF  L          +    L  C   G +Q+   +H   VK   E 
Sbjct: 691  ADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFEL 750

Query: 138  GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
             + ++  L+++Y K G V  A  +F +M ++D + WN ++ A   N   + A  F     
Sbjct: 751  DLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFH 810

Query: 198  N----PDTISYNEVINGIAQFGDIED------------AIMILSSMPSPNSSSWNSILTG 241
                 PD  + + VI G+    D+ +            A+ +       N  +WN  LT 
Sbjct: 811  RSGFFPDFSNLHCVIGGVNS--DVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTE 868

Query: 242  YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
            +++  ++  A+  F  +    +  D  T   +LS   G   L  G  IH+ VIK      
Sbjct: 869  FLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPV 928

Query: 302  IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
            + V+++L++MYSK G V  A+  F +    +L++WN MI+ YA+N    + I  F  L  
Sbjct: 929  VPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDL-- 986

Query: 362  VRD-LQPDSVTFLNVLAACSHTDIPFDKVSEYFE--SMTKDYGIK 403
            +RD L+PD  T  +VL ACS  D       EYF   S    Y IK
Sbjct: 987  LRDGLKPDQFTLASVLRACSTGD-----EGEYFTLGSQVHVYAIK 1026



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 169/362 (46%), Gaps = 27/362 (7%)

Query: 17   GWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLI 76
            G+    + +H Y +K GF  ++FVS AL+  Y K   +  A  +F ++P+   V WN ++
Sbjct: 731  GFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVML 790

Query: 77   SGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS-LQLGMAIHSKIVK--- 132
              YV++    +AL  F    RS  + D   F++     G + S +      H++ VK   
Sbjct: 791  KAYVENSFQDEALRFFSAFHRSGFFPD---FSNLHCVIGGVNSDVSNNRKRHAEQVKAYA 847

Query: 133  ---YSLERGVVIA--NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV---IAASARNG 184
               +  ++G  I   N  +  +   G +  AI  F  ++ +  I  +SV   I  SA  G
Sbjct: 848  MKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLL-RSTIGHDSVTLVIILSAAVG 906

Query: 185  NLELAFG-FLHRLP-----NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
              +L  G  +H L       P     N ++N  ++ G +  A     + P  +  SWN++
Sbjct: 907  ADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTM 966

Query: 239  LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML----SGIAGLSALTWGMLIHSCVI 294
            ++ Y   N   EA+  F ++    +  D++T +++L    +G  G    T G  +H   I
Sbjct: 967  ISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEG-EYFTLGSQVHVYAI 1025

Query: 295  KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
            K G+     V++AL+D+YSK G+++ A+ +       +L +WNA++ GY ++    K +E
Sbjct: 1026 KCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALE 1085

Query: 355  LF 356
             F
Sbjct: 1086 HF 1087


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 170/539 (31%), Positives = 271/539 (50%), Gaps = 48/539 (8%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H  I  SG    V ++ +L+  Y K   +  A  +F    +   VSWNSLI+GYV+ G 
Sbjct: 142 IHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGS 201

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQ--LGSLQLGMAIHSKIVKYSLERGVVIA 142
             + L L V++ R  +  ++Y+  SAL ACG     S++ G  +H   VK  L+  VV+ 
Sbjct: 202 NDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVG 261

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR---------NGNLELAFGFL 193
             L+D Y K G +EDA  +F  M D +++ +N++IA   +         N  + L F   
Sbjct: 262 TALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQ 321

Query: 194 HRLPNPDTISYNEVINGIAQF-----------------------------------GDIE 218
            R   P   +++ ++   +                                     G IE
Sbjct: 322 SRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIE 381

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
           D +    S P  +  SW S++ G+V   +    L LF E+       DE+T S MLS  A
Sbjct: 382 DGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACA 441

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            L+A+  G  IH+  IK G+    ++ ++ + MY+KCG ++ A+  F+     ++V+W+ 
Sbjct: 442 NLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSV 501

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           MI+  A++G   + ++LFE +K    + P+ +TFL VL ACSH  +  ++   YFE M K
Sbjct: 502 MISSNAQHGCAKEAVDLFELMKG-SGIAPNHITFLGVLVACSHGGL-VEEGLRYFEIMKK 559

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           D+GI P V+H   ++ L+G+ G +  A+  I + GF    V+WR+LLSA       D  +
Sbjct: 560 DHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGK 619

Query: 459 ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
             A  VI+LE ++   YV+L N+Y   G    A+ +RN M++RG++KE G SWIEV NV
Sbjct: 620 RVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNV 678



 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 128/419 (30%), Positives = 210/419 (50%), Gaps = 47/419 (11%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           L++ S+  G   + +  H +++K+ F   +F+   L+  Y K      A K+F  +P+ +
Sbjct: 25  LVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLFDRMPKRN 84

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           VVSWNSLISGY Q G Y + +NLF E   S++  D ++F++AL+ CG+   L+LG  IH+
Sbjct: 85  VVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHA 144

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN--- 185
            I    L   V++ N LIDMY KCG ++ A  VF    + D +SWNS+IA   R G+   
Sbjct: 145 LITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDE 204

Query: 186 -LELAFGFLHRLPN-------------------------------------PDTISYNEV 207
            L L    L    N                                      D +    +
Sbjct: 205 MLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTAL 264

Query: 208 INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP-----EALHLFGEMQSKD 262
           ++  A+ GD+EDA  I   MP PN   +N+++ G++    +      EA++LF EMQS+ 
Sbjct: 265 LDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRG 324

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +   E+TFS++L   + + A   G  IH+ + K  L +   + +AL+++YS  G +E   
Sbjct: 325 MKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGL 384

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             F S  + ++V+W ++I G+ +NG     + LF +L      +PD  T   +L+AC++
Sbjct: 385 KCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHEL-LFSGRKPDEFTISIMLSACAN 442



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/452 (24%), Positives = 198/452 (43%), Gaps = 56/452 (12%)

Query: 2   NEYVLFHLLRA-SSDLGWDTYC-QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           N Y L   L+A  S+      C + LH   +K G   +V V TAL+  Y KI  L DA K
Sbjct: 220 NSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATK 279

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKY-----RKALNLFVELERSEIYADAYSFTSALAAC 114
           +F  +P P+VV +N++I+G++Q          +A+ LF E++   +    ++F+S L AC
Sbjct: 280 IFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKAC 339

Query: 115 GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN 174
             + + + G  IH++I KY+L+    I N L+++Y   GS+ED +  F      D++SW 
Sbjct: 340 STIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWT 399

Query: 175 SVIAASARNGNLELAFGFLHRL----PNPD------------------------------ 200
           S+I    +NG  E      H L      PD                              
Sbjct: 400 SLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKT 459

Query: 201 -----TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
                TI  N  I   A+ GDI+ A M      +P+  SW+ +++         EA+ LF
Sbjct: 460 GIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLF 519

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-QGLDASIVVASALLDMYSK 314
             M+   +  +  TF  +L   +    +  G+     + K  G+  ++  ++ ++D+  +
Sbjct: 520 ELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGR 579

Query: 315 CGQVEIADS-MFRSLCRKNLVTWNAMITG--YARNGDLTKVIELFEQLKTVRDLQPDSVT 371
            G++  A+S +  S    + V W ++++     +  D  K +      + V +L+P++  
Sbjct: 580 AGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVA-----ERVIELEPEAAA 634

Query: 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
              VL    + D      +    ++ KD G+K
Sbjct: 635 SY-VLLYNIYNDAGIQMPATEIRNLMKDRGVK 665



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 146/320 (45%), Gaps = 27/320 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+    +L+A S +      +Q+H  I K    S+ F+  AL+  Y    S+ D  K 
Sbjct: 327 PSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKC 386

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F   P+  VVSW SLI G+VQ+G++   L LF EL  S    D ++ +  L+AC  L ++
Sbjct: 387 FHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAV 446

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH+  +K  +    +I N  I MY KCG ++ A   F E  + DI+SW+ +I+++
Sbjct: 447 KSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSN 506

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A++G  + A      +      P+ I++  V+   +  G +E+ +     M      +PN
Sbjct: 507 AQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPN 566

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
                 I+       R+ EA                     M SG  G   + W  L+ +
Sbjct: 567 VKHSACIVDLLGRAGRLAEAESFI-----------------MDSGFEG-DPVMWRSLLSA 608

Query: 292 CVIKQGLDASIVVASALLDM 311
           C + +  D    VA  ++++
Sbjct: 609 CRVHKATDTGKRVAERVIEL 628



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 150/324 (46%), Gaps = 47/324 (14%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
           D+ ++T  +    + GSL  G   H  ++K   +  + + N L+ MY KCG  + A  +F
Sbjct: 18  DSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLF 77

Query: 163 GEMIDKDIISWNSVIAASARNG---------------------------------NLELA 189
             M  ++++SWNS+I+   + G                                  L+L 
Sbjct: 78  DRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLR 137

Query: 190 FG-FLHRLPNPDTIS-----YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYV 243
            G  +H L     +       N +I+   + G I+ A ++  S    +S SWNS++ GYV
Sbjct: 138 LGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYV 197

Query: 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG--LSALTWGMLIHSCVIKQGLDAS 301
                 E L L  +M    + ++ Y   + L        S++  G ++H C +K GLD  
Sbjct: 198 RIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLD 257

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL-----TKVIELF 356
           +VV +ALLD Y+K G +E A  +F+ +   N+V +NAMI G+ +   +      + + LF
Sbjct: 258 VVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLF 317

Query: 357 EQLKTVRDLQPDSVTFLNVLAACS 380
            ++++ R ++P   TF ++L ACS
Sbjct: 318 FEMQS-RGMKPSEFTFSSILKACS 340



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 70/120 (58%), Gaps = 1/120 (0%)

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +P+D  T++ ++       +L  G L H  +IK      + + + LL MY KCG+ ++A 
Sbjct: 15  LPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAK 74

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F  + ++N+V+WN++I+GY + G   +V+ LF++ + + DL+ D  TF N L+ C  T
Sbjct: 75  KLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEAR-MSDLRLDKFTFSNALSVCGRT 133


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 157/518 (30%), Positives = 274/518 (52%), Gaps = 26/518 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +V   + +A S+L      + ++ Y+L  GF  N  V  +++  + K   +  A + 
Sbjct: 109 PDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRF 168

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EI    V  WN ++SGY   G+++KALN+F ++    +  ++ +  SA++AC  L  L
Sbjct: 169 FEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLL 228

Query: 121 QLGMAIHSKIVKYS-LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           + G  IH   +K   L+  +++ N L+D Y KC SVE A   FG +   D++SWN+++A 
Sbjct: 229 RHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAV 288

Query: 180 SA--RNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
           +   + G+ + A  F  R+                       A  + S + + +   WNS
Sbjct: 289 TGFTQYGDGKAALEFFQRM---------------------HIACSVFSELSTRDVVVWNS 327

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           I++      R   AL L  EM   +V ++  T  + L   + L+AL  G  IH  +I+ G
Sbjct: 328 IISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCG 387

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
           LD    + ++L+DMY +CG ++ +  +F  + +++LV+WN MI+ Y  +G     + LF+
Sbjct: 388 LDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQ 447

Query: 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417
           Q +T+  L+P+ +TF N+L+ACSH+ +  ++  +YF+ M  +Y + P VE    M+ L+ 
Sbjct: 448 QFRTM-GLKPNHITFTNLLSACSHSGL-IEEGWKYFKMMKTEYAMDPAVEQYACMVDLLS 505

Query: 418 QKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477
           + G+       I ++ F     VW +LL A     + D+A  +A  + +LE  S   YV+
Sbjct: 506 RAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVL 565

Query: 478 LCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           + N+Y++ G W+ A+ +R  M+ERG+ K  GCSWIEV+
Sbjct: 566 MANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVK 603



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/459 (21%), Positives = 203/459 (44%), Gaps = 67/459 (14%)

Query: 99  EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
           EIYA      S L  C +L +L+LG  +H+++V   ++    + + L+++Y + G VEDA
Sbjct: 11  EIYA------SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDA 64

Query: 159 IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQF 214
             +F +M ++++ SW +++      G+ E      + + N    PD   + +V    ++ 
Sbjct: 65  RRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSEL 124

Query: 215 -----------------------------------GDIEDAIMILSSMPSPNSSSWNSIL 239
                                              G ++ A      +   +   WN ++
Sbjct: 125 KNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMV 184

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS-CVIKQGL 298
           +GY ++    +AL++F +M  + V  +  T ++ +S    LS L  G  IH  C+  + L
Sbjct: 185 SGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEEL 244

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM--ITGYARNGDLTKVIELF 356
           D+ ++V ++L+D Y+KC  VE+A   F  + + +LV+WNAM  +TG+ + GD    +E F
Sbjct: 245 DSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFF 304

Query: 357 EQLKTVRDL-----QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP----TVE 407
           +++     +       D V + ++++AC+ +    + +    E    +  +      +  
Sbjct: 305 QRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSAL 364

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
             CS +  + Q  E+    + I   G  +   +  +L+   G C  +  +R     +  L
Sbjct: 365 PACSKLAALRQGKEI---HQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSR----RIFDL 417

Query: 468 EGDSDYV-YVMLCNLYTSHG-NWDVASVMRNFMRERGLR 504
               D V + ++ ++Y  HG   D  ++ + F R  GL+
Sbjct: 418 MPQRDLVSWNVMISVYGMHGFGMDAVNLFQQF-RTMGLK 455


>gi|449467189|ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Cucumis sativus]
          Length = 711

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 147/463 (31%), Positives = 253/463 (54%), Gaps = 2/463 (0%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           ++  + +A K+F ++P  +VV+W  +I GY++    +    LF+ + R  +  +A + T 
Sbjct: 212 RVGKIVEARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTV 271

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
            L ACG       G+ IH  ++    +    +AN +I MY +C S++ A   F  M+ KD
Sbjct: 272 LLEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKD 331

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           I++WNS+I    ++GNLE A      +P  D +S+  +I G A  G I++ I +   MP 
Sbjct: 332 IVTWNSLITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPE 391

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            ++ +W ++++G V+      A H F +M    +  + +T S +LS  A ++ L  G+ I
Sbjct: 392 KDAIAWTAVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQI 451

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H+ V K  ++  + + ++L+ MYSKCG V+ A  MF  +   N+V +N +ITG A+NG  
Sbjct: 452 HAIVTKMSMENDLSIQNSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLG 511

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409
            + +E+F +++    L P+ +TFL VL+AC H  +  ++   YF+ M   Y I+P  +H 
Sbjct: 512 KEALEIFTKMQD-DYLVPNHITFLGVLSACVHVGL-VEEGRRYFDLMRSLYDIQPEPDHY 569

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469
             M+ L+ + G    A  ++  + F  +  VW A+L AS     LDVA ++A  + +LE 
Sbjct: 570 ACMVDLLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAELAAQNLFELEP 629

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           +S   YV+L NL++  G+     ++R   + RGL+K  GCSWI
Sbjct: 630 NSATPYVILSNLHSISGDERKHELIRLMKKSRGLKKSPGCSWI 672



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 158/319 (49%), Gaps = 43/319 (13%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           TAL+  Y + + +  A ++F +IP P+V S+N++I+ Y +     +A  LF  + +    
Sbjct: 82  TALLTAYAENSEINKAREVFNKIPDPNVASYNAMITAYHRRNMVDEAFELFSSMPQR--- 138

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA-NCLIDMYGKCGSVEDAIG 160
            ++ S+ + +      G   +   +H        E+ V+++ N LI+ Y K G VEDA+ 
Sbjct: 139 -NSVSYATMITGFVHAGMFDMAEKLHR-------EKPVIVSSNVLINGYSKVGRVEDAVR 190

Query: 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220
           +F  M +KD++SW+S+                               I+G+ + G I +A
Sbjct: 191 IFDGMAEKDVVSWSSM-------------------------------ISGLCRVGKIVEA 219

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             +   MP  N  +W  ++ GY+  N + +   LF  M+ + V ++  T + +L      
Sbjct: 220 RKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGSF 279

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
                G+ IH  V+  G D    +A++++ MYS+C  ++ A   F  + +K++VTWN++I
Sbjct: 280 DRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLI 339

Query: 341 TGYARNGDLTKVIELFEQL 359
           TGY ++G+L K + LFE +
Sbjct: 340 TGYVQSGNLEKAVFLFENM 358



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 104/192 (54%), Gaps = 10/192 (5%)

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           K ++  NS I    RNG ++ A    +R+PN +T+S+  ++   A+  +I  A  + + +
Sbjct: 45  KFLVYCNSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKI 104

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
           P PN +S+N+++T Y  RN V EA  LF  M  +    +  +++TM++G           
Sbjct: 105 PDPNVASYNAMITAYHRRNMVDEAFELFSSMPQR----NSVSYATMITGFVHAGMFDMAE 160

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
            +H           IV ++ L++ YSK G+VE A  +F  +  K++V+W++MI+G  R G
Sbjct: 161 KLHR------EKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVG 214

Query: 348 DLTKVIELFEQL 359
            + +  +LF+++
Sbjct: 215 KIVEARKLFDKM 226



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 122/271 (45%), Gaps = 68/271 (25%)

Query: 18  WDTYCQ--QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSL 75
           +D Y +  Q+H  +L  GF  + +++ +++  Y +  S+  A K F  + +  +V+WNSL
Sbjct: 279 FDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSL 338

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYA---------------------------DAYSFT 108
           I+GYVQSG   KA+ LF  + + ++ +                           DA ++T
Sbjct: 339 ITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDAIAWT 398

Query: 109 SALAACGQLGSLQLG----------------------------MAI-------HSKIVKY 133
           + ++    +   ++                             MAI       H+ + K 
Sbjct: 399 AVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKM 458

Query: 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL 193
           S+E  + I N L+ MY KCG+V+DA+ +F  +   +++++N++I   A+NG  + A    
Sbjct: 459 SMENDLSIQNSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLGKEALEIF 518

Query: 194 HRLPN----PDTISYNEVINGIAQFGDIEDA 220
            ++ +    P+ I++  V++     G +E+ 
Sbjct: 519 TKMQDDYLVPNHITFLGVLSACVHVGLVEEG 549



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 97/191 (50%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + L  +L A + +       Q+H  + K    +++ +  +L+  Y K  ++ DA KM
Sbjct: 427 PNAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMENDLSIQNSLVSMYSKCGNVDDALKM 486

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I  P+VV++N++I+G  Q+G  ++AL +F +++   +  +  +F   L+AC  +G +
Sbjct: 487 FYYIKVPNVVAYNTIITGLAQNGLGKEALEIFTKMQDDYLVPNHITFLGVLSACVHVGLV 546

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G      +   Y ++       C++D+  + G  ++A+ +   M  D     W +V+ 
Sbjct: 547 EEGRRYFDLMRSLYDIQPEPDHYACMVDLLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLG 606

Query: 179 ASARNGNLELA 189
           AS  +  L++A
Sbjct: 607 ASWTHLRLDVA 617


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 171/539 (31%), Positives = 273/539 (50%), Gaps = 48/539 (8%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H  I  SG    V ++ +L+  Y K   +  A  +F    +   VSWNSLI+GYV+ G 
Sbjct: 63  IHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGS 122

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQ--LGSLQLGMAIHSKIVKYSLERGVVIA 142
             + L L V++ R  +  ++Y+  SAL ACG     S++ G  +H   VK  L+  VV+ 
Sbjct: 123 NDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVG 182

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR---------NGNLELAFGFL 193
             L+D Y K G +EDA  +F  M D +++ +N++IA   +         N  + L F   
Sbjct: 183 TALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQ 242

Query: 194 HRLPNPDTISYNEVI-------------------------------NGIAQF----GDIE 218
            R   P   +++ ++                               N + +     G IE
Sbjct: 243 SRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIE 302

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
           D +    S P  +  SW S++ G+V   +    L LF E+       DE+T S MLS  A
Sbjct: 303 DGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACA 362

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            L+A+  G  IH+  IK G+    ++ ++ + MY+KCG ++ A+  F+     ++V+W+ 
Sbjct: 363 NLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSV 422

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           MI+  A++G   + ++LFE +K    + P+ +TFL VL ACSH  +  ++   YFE M K
Sbjct: 423 MISSNAQHGCAKEAVDLFELMKG-SGIAPNHITFLGVLVACSHGGL-VEEGLRYFEIMKK 480

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           D+GI P V+H   ++ L+G+ G +  A+  I + GF    V+WR+LLSA       D  +
Sbjct: 481 DHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGK 540

Query: 459 ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
             A  VI+LE ++   YV+L N+Y   G    A+ +RN M++RG++KE G SWIEV NV
Sbjct: 541 RVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNV 599



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/364 (31%), Positives = 184/364 (50%), Gaps = 47/364 (12%)

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
           +P+ +VVSWNSLISGY Q G Y + +NLF E   S++  D ++F++AL+ CG+   L+LG
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
             IH+ I    L   V++ N LIDMY KCG ++ A  VF    + D +SWNS+IA   R 
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 184 GN----LELAFGFLHRLPN-------------------------------------PDTI 202
           G+    L L    L    N                                      D +
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 180

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP-----EALHLFGE 257
               +++  A+ GD+EDA  I   MP PN   +N+++ G++    +      EA++LF E
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFE 240

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           MQS+ +   E+TFS++L   + + A   G  IH+ + K  L +   + +AL+++YS  G 
Sbjct: 241 MQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGS 300

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +E     F S  + ++V+W ++I G+ +NG     + LF +L      +PD  T   +L+
Sbjct: 301 IEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHEL-LFSGRKPDEFTISIMLS 359

Query: 378 ACSH 381
           AC++
Sbjct: 360 ACAN 363



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 112/452 (24%), Positives = 198/452 (43%), Gaps = 56/452 (12%)

Query: 2   NEYVLFHLLRA-SSDLGWDTYC-QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           N Y L   L+A  S+      C + LH   +K G   +V V TAL+  Y KI  L DA K
Sbjct: 141 NSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATK 200

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKY-----RKALNLFVELERSEIYADAYSFTSALAAC 114
           +F  +P P+VV +N++I+G++Q          +A+ LF E++   +    ++F+S L AC
Sbjct: 201 IFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKAC 260

Query: 115 GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN 174
             + + + G  IH++I KY+L+    I N L+++Y   GS+ED +  F      D++SW 
Sbjct: 261 STIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWT 320

Query: 175 SVIAASARNGNLELAFGFLHRL----PNPD------------------------------ 200
           S+I    +NG  E      H L      PD                              
Sbjct: 321 SLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKT 380

Query: 201 -----TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
                TI  N  I   A+ GDI+ A M      +P+  SW+ +++         EA+ LF
Sbjct: 381 GIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLF 440

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-QGLDASIVVASALLDMYSK 314
             M+   +  +  TF  +L   +    +  G+     + K  G+  ++  ++ ++D+  +
Sbjct: 441 ELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGR 500

Query: 315 CGQVEIADS-MFRSLCRKNLVTWNAMITG--YARNGDLTKVIELFEQLKTVRDLQPDSVT 371
            G++  A+S +  S    + V W ++++     +  D  K +      + V +L+P++  
Sbjct: 501 AGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVA-----ERVIELEPEAAA 555

Query: 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
              VL    + D      +    ++ KD G+K
Sbjct: 556 SY-VLLYNIYNDAGIQMPATEIRNLMKDRGVK 586



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 146/320 (45%), Gaps = 27/320 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+    +L+A S +      +Q+H  I K    S+ F+  AL+  Y    S+ D  K 
Sbjct: 248 PSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKC 307

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F   P+  VVSW SLI G+VQ+G++   L LF EL  S    D ++ +  L+AC  L ++
Sbjct: 308 FHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAV 367

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH+  +K  +    +I N  I MY KCG ++ A   F E  + DI+SW+ +I+++
Sbjct: 368 KSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSN 427

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A++G  + A      +      P+ I++  V+   +  G +E+ +     M      +PN
Sbjct: 428 AQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPN 487

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
                 I+       R+ EA                     M SG  G   + W  L+ +
Sbjct: 488 VKHSACIVDLLGRAGRLAEAESFI-----------------MDSGFEG-DPVMWRSLLSA 529

Query: 292 CVIKQGLDASIVVASALLDM 311
           C + +  D    VA  ++++
Sbjct: 530 CRVHKATDTGKRVAERVIEL 549


>gi|116310835|emb|CAH67622.1| OSIGBa0140J09.3 [Oryza sativa Indica Group]
          Length = 1027

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 169/574 (29%), Positives = 288/574 (50%), Gaps = 52/574 (9%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +E+    +L A + L      +Q+HC  +K+    ++FV+ A +  Y K  ++ DA  +F
Sbjct: 425 DEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALF 484

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             IP    +SWN+L  G  Q+ +  +A+ +   +    I  D  SF++A+ AC  + + +
Sbjct: 485 SLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATE 544

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  IH   +KY +     + + LID+Y K G VE +  +F ++    I+  N++IA   
Sbjct: 545 TGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFV 604

Query: 182 RNGNLELAFGFLHRLPN----PDTISYNEVINGIAQ--------------------FGD- 216
           +N N + A     ++      P +++++ +++G +                     + D 
Sbjct: 605 QNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDT 664

Query: 217 ---------------IEDAIMILSSMPS-PNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                          +EDA  +L+ MP   N   W +I++GY        +L  F  M+ 
Sbjct: 665 LLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRH 724

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            +V  DE TF+++L   + ++A   G  IH  + K G  +     SAL+DMYSKCG V  
Sbjct: 725 CNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVIS 784

Query: 321 ADSMFRSLCRK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           +   F+ L  K +++ WN+MI G+A+NG   + + LF++++ ++ ++PD VTFL VL AC
Sbjct: 785 SFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQ-IKPDEVTFLGVLIAC 843

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +H+ +   +   +F  M K YG+ P ++H    I L+G+ G +  AQ  I +L F   GV
Sbjct: 844 THSGL-ISEGRHFFGPMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGV 902

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           VW   L+A     D +  +I+A ++++LE      YV+L +L+ + GNW  A V R  MR
Sbjct: 903 VWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMR 962

Query: 500 ERGLRKEAGCSWIEVENVAA--------HSSNIR 525
           E+G+ K  GCSWI V N  +        H  N+R
Sbjct: 963 EKGVAKFPGCSWITVGNKTSLFLVQDKYHPDNLR 996



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 186/365 (50%), Gaps = 6/365 (1%)

Query: 22  CQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           C+ LH  IL+ G      +  +L+  Y K   +  A        + +  + +SL+S + +
Sbjct: 75  CRALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHAR 134

Query: 82  SGKYRKALNLFVELE-RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           SG     L  F  +   +    D +     L+AC ++G L  G  +H  +VK      V 
Sbjct: 135 SGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVF 194

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-- 198
               L+DMY KCG V +A  VF  +   D I W+S+IA   R G  + A     R+    
Sbjct: 195 CEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMG 254

Query: 199 --PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
             PD ++   +I+ +A  G ++ A  +L  MP+P++ +WN++++G+         L L+ 
Sbjct: 255 SAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYK 314

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           +M+S  +     TF++MLS  A + A   G  +H+  +  GLDA++ V S+L+++Y+KCG
Sbjct: 315 DMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCG 374

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
               A ++F   C KN+V WNAM+TG+ +N    + I +F+ +     LQ D  TF+++L
Sbjct: 375 CPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRY-TLQTDEFTFVSIL 433

Query: 377 AACSH 381
            AC++
Sbjct: 434 GACTY 438



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 220/446 (49%), Gaps = 27/446 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++ L  +L A S +G   Y +Q+HC ++KSGF S+VF   AL+  Y K   + +A ++
Sbjct: 156 PDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRV 215

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I  P  + W+S+I+ Y + G Y++AL LF  +++     D  +  + ++     G L
Sbjct: 216 FDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRL 275

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN------ 174
               A+  K+   S     V  N +I  + + G   + +G++     KD+ SW       
Sbjct: 276 DHATALLKKMPTPS----TVAWNAVISGHAQSGLEFNVLGLY-----KDMRSWGLWPTRS 326

Query: 175 ---SVIAASAR-----NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
              S+++A+A       G    A   +H L + +    + +IN  A+ G   DA  +   
Sbjct: 327 TFASMLSAAANMKAFVEGQQMHAAAVMHGL-DANVFVGSSLINLYAKCGCPSDAKNVFDL 385

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
               N   WN++LTG+V      EA+ +F  M    +  DE+TF ++L     LS+   G
Sbjct: 386 SCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLG 445

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
             +H   IK  +D S+ VA+A LDMYSK G +  A ++F  +  K+ ++WNA+  G A+N
Sbjct: 446 KQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQN 505

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
            +  + + + ++++ +  + PD V+F   + ACS  +I   +  +    +   YGI    
Sbjct: 506 LEEEEAVCMLKRMR-LHGITPDDVSFSTAINACS--NIRATETGKQIHCLAIKYGICSNH 562

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIREL 432
               S+I L  + G+V  ++++  ++
Sbjct: 563 AVGSSLIDLYSKHGDVESSRKIFAQV 588



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 203/421 (48%), Gaps = 42/421 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P       +L A++++      QQ+H   +  G  +NVFV ++L+  Y K    +DA  +
Sbjct: 323 PTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNV 382

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    + ++V WN++++G+VQ+    +A+ +F  + R  +  D ++F S L AC  L S 
Sbjct: 383 FDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSF 442

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  +H   +K  ++  + +AN  +DMY K G++ DA  +F  +  KD ISWN++    
Sbjct: 443 YLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGL 502

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVIN---------------------GI---- 211
           A+N   E A   L R+      PD +S++  IN                     GI    
Sbjct: 503 AQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNH 562

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     ++ GD+E +  I + + + +    N+++ G+V  N   EA+ LF ++   
Sbjct: 563 AVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKD 622

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEI 320
            +     TFS++LSG +G      G  +H   +K G L    ++  +L  +Y K   +E 
Sbjct: 623 GLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLED 682

Query: 321 ADSMFRSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           A+ +   +   KNL  W A+I+GYA+NG     +  F +++   +++ D  TF +VL AC
Sbjct: 683 ANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHC-NVRSDEATFASVLKAC 741

Query: 380 S 380
           S
Sbjct: 742 S 742


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 159/554 (28%), Positives = 286/554 (51%), Gaps = 42/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++     LLRA +        +++H  + + G+ + ++V TA++  Y K  S+ DA ++
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEV 369

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   +VVSW ++I+G+ Q G+  +A   F ++  S I  +  +F S L AC    +L
Sbjct: 370 FDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSAL 429

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  I   I++        +   L+ MY KCGS++DA  VF ++  +++++WN++I A 
Sbjct: 430 KRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAY 489

Query: 181 ARNGNLELAFGFLHRL------PNPDTISY------------------------------ 204
            ++   + A      L      PN  T +                               
Sbjct: 490 VQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDL 549

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +++     GD+  A  + + MP  +  SWN+I+ G+V   +   A   F  MQ  
Sbjct: 550 HVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQES 609

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D+ TF+ +L+  A   ALT G  +H+ + +   D  ++V + L+ MY+KCG +E A
Sbjct: 610 GIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDA 669

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  L +KN+ +W +MITGYA++G   + +ELF Q++    ++PD +TF+  L+AC+H
Sbjct: 670 HQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQ-EGVKPDWITFVGALSACAH 728

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  ++   +F+SM K++ I+P +EH   M+ L G+ G +  A   I ++       VW
Sbjct: 729 AGL-IEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVW 786

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL A     ++++A  +A + ++L+ + + V+V+L N+Y + G W   + MR  M +R
Sbjct: 787 GALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDR 846

Query: 502 GLRKEAGCSWIEVE 515
           G+ K+ G SWIEV+
Sbjct: 847 GVVKKPGQSWIEVD 860



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 218/419 (52%), Gaps = 40/419 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++     +L A +D       ++L+  ILK+G+ +++FV TAL+  + K   + DA K+
Sbjct: 209 PDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKV 268

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P   +V+W S+I+G  + G++++A NLF  +E   +  D  +F S L AC    +L
Sbjct: 269 FDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEAL 328

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H+++ +   +  + +   ++ MY KCGS+EDA+ VF  +  ++++SW ++IA  
Sbjct: 329 EQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGF 388

Query: 181 ARNGNLELAFGFLHRL------PN-------------PDTISYNEVING----------- 210
           A++G ++ AF F +++      PN             P  +   + I             
Sbjct: 389 AQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDD 448

Query: 211 ---------IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     A+ G ++DA  +   +   N  +WN+++T YV   +   AL  F  +  +
Sbjct: 449 RVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKE 508

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  +  TF+++L+      +L  G  +H  ++K GL++ + V++AL+ M+  CG +  A
Sbjct: 509 GIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSA 568

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            ++F  + +++LV+WN +I G+ ++G      + F+ ++    ++PD +TF  +L AC+
Sbjct: 569 KNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQE-SGIKPDKITFTGLLNACA 626



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 193/400 (48%), Gaps = 40/400 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           ++++ +I KSG   ++F+   L+  Y K  +   A ++F ++ +  V SWN L+ GYVQ 
Sbjct: 130 ERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQH 189

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G Y +A  L  ++ +  +  D  +F S L AC    ++  G  +++ I+K   +  + + 
Sbjct: 190 GLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG 249

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
             LI+M+ KCG + DA  VF  +  +D+++W S+I   AR+G  + A     R+      
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 199 PDTISY-----------------------------NEVINGIA------QFGDIEDAIMI 223
           PD +++                              E+  G A      + G +EDA+ +
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEV 369

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +   N  SW +++ G+    R+ EA   F +M    +  +  TF ++L   +  SAL
Sbjct: 370 FDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSAL 429

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  I   +I+ G  +   V +ALL MY+KCG ++ A  +F  + ++N+V WNAMIT Y
Sbjct: 430 KRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAY 489

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
            ++      +  F+ L     ++P+S TF ++L  C  +D
Sbjct: 490 VQHEQYDNALATFQAL-LKEGIKPNSSTFTSILNVCKSSD 528



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/492 (23%), Positives = 222/492 (45%), Gaps = 80/492 (16%)

Query: 73  NSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132
           N++++   ++G++ +A+ +   ++ S I     ++++ L  C +  +L  G  I++ I K
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF 192
             ++  + + N LI+MY KCG+   A  +F +M +KD+ SWN ++    ++G  E AF  
Sbjct: 139 SGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 193 LHRLPN----PDTISYNEVINGIA-----------------------------------Q 213
             ++      PD  ++  ++N  A                                   +
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
            GDI DA  +  ++P+ +  +W S++TG     R  +A +LF  M+ + V  D+  F ++
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           L       AL  G  +H+ + + G D  I V +A+L MY+KCG +E A  +F  +  +N+
Sbjct: 319 LRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNV 378

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393
           V+W AMI G+A++G + +    F ++     ++P+ VTF+++L ACS             
Sbjct: 379 VSWTAMIAGFAQHGRIDEAFLFFNKM-IESGIEPNRVTFMSILGACS------------- 424

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD 453
                     P+            ++G+  + Q  I E G+GS   V  ALLS    C  
Sbjct: 425 ---------SPSAL----------KRGQ--QIQDHIIEAGYGSDDRVRTALLSMYAKCGS 463

Query: 454 L-DVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           L D  R+      K+   +   +  +   Y  H  +D A      + + G++  +  ++ 
Sbjct: 464 LKDAHRVFE----KISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSS-TFT 518

Query: 513 EVENVAAHSSNI 524
            + NV   S ++
Sbjct: 519 SILNVCKSSDSL 530


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 165/555 (29%), Positives = 272/555 (49%), Gaps = 41/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +    +  A+S         Q H   +K+    +VFV ++L+  Y KI  + DA K+
Sbjct: 111 PNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKV 170

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP+ + VSW ++ISGY       +A  LF  + R E   D + +TS L+A      +
Sbjct: 171 FDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLV 230

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH   +K  L     + N L+ MYGKCG ++DA+  F    DKD I+W+++I   
Sbjct: 231 HYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGY 290

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMI------------- 223
           A+ G+   A    + +      P   ++  VIN  +  G +E+   I             
Sbjct: 291 AQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQI 350

Query: 224 ----------------------LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                                    +  P+   W S+++GY        AL L+  MQ +
Sbjct: 351 YFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQME 410

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +   E T +++L   + L+AL  G  IH+  IK G    + + SAL  MY+KCG +E  
Sbjct: 411 RIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDG 470

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           + +FR +  ++++TWNAMI+G ++NG+  K +ELFE+L+     +PD VTF+NVL+ACSH
Sbjct: 471 NLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRH-GTTKPDYVTFVNVLSACSH 529

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  ++   YF  M  ++GI P VEH   M+ ++ + G++   +  I          +W
Sbjct: 530 MGL-VERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLW 588

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LL A     + ++   +  ++++L       Y++L ++YT+ G  D    +R  M+ R
Sbjct: 589 RILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLR 648

Query: 502 GLRKEAGCSWIEVEN 516
           G+ KE GCSWIE+++
Sbjct: 649 GVNKEPGCSWIELKS 663



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 186/402 (46%), Gaps = 48/402 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H  +L++G  S+V+++ +L+  Y K  S+  A  +F  I    VVSWN LI+GY Q 
Sbjct: 30  KAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQK 89

Query: 83  GK--YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           G   Y   + LF  +       + ++F+    A         G+  H+  +K S    V 
Sbjct: 90  GTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVF 149

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF---------- 190
           + + LI+MY K G + DA  VF  + +++ +SW ++I+  A      +AF          
Sbjct: 150 VGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAME---RMAFEAWELFXLMR 206

Query: 191 ------------GFLHRLPNPDTISYNEVINGIA--------------------QFGDIE 218
                         L  L  PD + Y + I+ +A                    + G ++
Sbjct: 207 REEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLD 266

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
           DA+         +  +W++++TGY       EAL+LF  M        E+TF  +++  +
Sbjct: 267 DALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACS 326

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            + AL  G  IH   +K G +  I   +AL+DMY+KCG +  A   F  L   ++V W +
Sbjct: 327 DIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTS 386

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           MI+GYA+NG+    + L+ +++  R + P  +T  +VL ACS
Sbjct: 387 MISGYAQNGENETALTLYCRMQMER-IMPHELTMASVLRACS 427



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 153/316 (48%), Gaps = 42/316 (13%)

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
           SF   L  C +   LQ G AIH+++++      V + N L+++Y KCGS+  A  VF  +
Sbjct: 12  SFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESI 71

Query: 166 IDKDIISWNSVIAASARNGNLELAF--GFLHR------LPNPDTIS-------------- 203
            +KD++SWN +I   ++ G +  +F      R      LPN  T S              
Sbjct: 72  TNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFG 131

Query: 204 --------------YN-----EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
                         Y+      +IN   + G + DA  +  ++P  N+ SW +I++GY  
Sbjct: 132 GLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAM 191

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV 304
                EA  LF  M+ ++   D++ ++++LS +     + +G  IH   +K GL +   V
Sbjct: 192 ERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASV 251

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
            +AL+ MY KCG ++ A   F     K+ +TW+AMITGYA+ GD  + + LF  +  +  
Sbjct: 252 GNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMH-LNG 310

Query: 365 LQPDSVTFLNVLAACS 380
            +P   TF+ V+ ACS
Sbjct: 311 NKPSEFTFVGVINACS 326



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 71/126 (56%), Gaps = 3/126 (2%)

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +P    +F  +L        L  G  IH+ +++ G  +S+ + ++L+++Y+KCG +  A 
Sbjct: 6   LPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAK 65

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDL--TKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            +F S+  K++V+WN +I GY++ G +  + V+ELF++++    L P+  TF  V  A S
Sbjct: 66  LVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTL-PNGHTFSGVFTAAS 124

Query: 381 HTDIPF 386
            +   F
Sbjct: 125 SSPETF 130


>gi|334185633|ref|NP_189226.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546761|sp|Q9LU94.2|PP255_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25970
 gi|332643575|gb|AEE77096.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 171/546 (31%), Positives = 284/546 (52%), Gaps = 51/546 (9%)

Query: 15  DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNS 74
           DLG     +Q+H  ++K G+  NV+V ++L+  Y K   + DA + F EI +P+ VSWN+
Sbjct: 118 DLG-----EQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNA 172

Query: 75  LISGYVQSGKYRKALNLFVELE-RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY 133
           LI+G+VQ    + A  L   +E ++ +  DA +F   L          L   +H+K++K 
Sbjct: 173 LIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKL 232

Query: 134 SLERGVVIANCLIDMYGKCGSVEDAIGVF-GEMIDKDIISWNSVIAASARNGNLELAFGF 192
            L+  + I N +I  Y  CGSV DA  VF G    KD+ISWNS+IA  +++   E AF  
Sbjct: 233 GLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFEL 292

Query: 193 LHRLP----NPDTISY-----------------------------------NEVINGIAQ 213
             ++       D  +Y                                   N +I+   Q
Sbjct: 293 FIQMQRHWVETDIYTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQ 352

Query: 214 F--GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271
           F  G +EDA+ +  S+ S +  SWNSI+TG+  +    +A+  F  ++S ++ +D+Y FS
Sbjct: 353 FPTGTMEDALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFS 412

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
            +L   + L+ L  G  IH+   K G  ++  V S+L+ MYSKCG +E A   F+ +  K
Sbjct: 413 ALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSK 472

Query: 332 N-LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
           +  V WNAMI GYA++G     ++LF Q+   ++++ D VTF  +L ACSHT +  + + 
Sbjct: 473 HSTVAWNAMILGYAQHGLGQVSLDLFSQMCN-QNVKLDHVTFTAILTACSHTGLIQEGL- 530

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450
           E    M   Y I+P +EH  + + L+G+ G V +A+ +I  +      +V +  L    A
Sbjct: 531 ELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMVLKTFLGVCRA 590

Query: 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCS 510
           C ++++A   A  ++++E +  + YV L ++Y+    W+  + ++  M+ERG++K  G S
Sbjct: 591 CGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKERGVKKVPGWS 650

Query: 511 WIEVEN 516
           WIE+ N
Sbjct: 651 WIEIRN 656



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 128/463 (27%), Positives = 220/463 (47%), Gaps = 46/463 (9%)

Query: 26  HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKY 85
           HCY +K G +S+++VS  ++  Y K   L  A+ +F E+P+   VSWN++ISGY   GK 
Sbjct: 23  HCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKL 82

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
             A  LF  ++RS    D YSF+  L     +    LG  +H  ++K   E  V + + L
Sbjct: 83  EDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSL 142

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISY- 204
           +DMY KC  VEDA   F E+ + + +SWN++IA   +  +++ AF  L  +     ++  
Sbjct: 143 VDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMD 202

Query: 205 ---------------------------------------NEVINGIAQFGDIEDAIMILS 225
                                                  N +I+  A  G + DA  +  
Sbjct: 203 AGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFD 262

Query: 226 SM-PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
            +  S +  SWNS++ G+        A  LF +MQ   V  D YT++ +LS  +G     
Sbjct: 263 GLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQI 322

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSK--CGQVEIADSMFRSLCRKNLVTWNAMITG 342
           +G  +H  VIK+GL+      +AL+ MY +   G +E A S+F SL  K+L++WN++ITG
Sbjct: 323 FGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITG 382

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           +A+ G     ++ F  L++  +++ D   F  +L +CS  D+   ++ +   ++    G 
Sbjct: 383 FAQKGLSEDAVKFFSYLRS-SEIKVDDYAFSALLRSCS--DLATLQLGQQIHALATKSGF 439

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
                   S+I +  + G +  A++  +++      V W A++
Sbjct: 440 VSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMI 482



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 123/243 (50%), Gaps = 2/243 (0%)

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
           N +++   +FG +  A M+   MP  +S SWN++++GY +  ++ +A  LF  M+     
Sbjct: 39  NRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGSD 98

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
           +D Y+FS +L GIA +     G  +H  VIK G + ++ V S+L+DMY+KC +VE A   
Sbjct: 99  VDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEA 158

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
           F+ +   N V+WNA+I G+ +  D+     L   ++    +  D+ TF  +L      D 
Sbjct: 159 FKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLD--DP 216

Query: 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRAL 444
            F  + +   +     G++  +  C +MI      G V  A+R+   LG     + W ++
Sbjct: 217 MFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSM 276

Query: 445 LSA 447
           ++ 
Sbjct: 277 IAG 279



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 7/231 (3%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKI--NSLADAHKMF 61
           Y    LL A S      + + LH  ++K G       + AL+  Y +    ++ DA  +F
Sbjct: 306 YTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLF 365

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +    ++SWNS+I+G+ Q G    A+  F  L  SEI  D Y+F++ L +C  L +LQ
Sbjct: 366 ESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQ 425

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIAAS 180
           LG  IH+   K        + + LI MY KCG +E A   F ++  K   ++WN++I   
Sbjct: 426 LGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGY 485

Query: 181 ARNGNLELAFGFLHRLPNP----DTISYNEVINGIAQFGDIEDAIMILSSM 227
           A++G  +++     ++ N     D +++  ++   +  G I++ + +L+ M
Sbjct: 486 AQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLM 536



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 3/191 (1%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           ++Y    LLR+ SDL      QQ+H    KSGF+SN FV ++L+  Y K   +  A K F
Sbjct: 407 DDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCF 466

Query: 62  VEI-PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            +I  + S V+WN++I GY Q G  + +L+LF ++    +  D  +FT+ L AC   G +
Sbjct: 467 QQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLI 526

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           Q G+ + + +   Y ++  +      +D+ G+ G V  A  +   M ++ D +   + + 
Sbjct: 527 QEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMVLKTFLG 586

Query: 179 ASARNGNLELA 189
                G +E+A
Sbjct: 587 VCRACGEIEMA 597



 Score = 45.8 bits (107), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
           L H   IK G  + I V++ +LD Y K G +  A+ +F  + +++ V+WN MI+GY   G
Sbjct: 21  LTHCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCG 80

Query: 348 DLTKVIELFEQLK 360
            L     LF  +K
Sbjct: 81  KLEDAWCLFTCMK 93


>gi|449530420|ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 719

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 147/463 (31%), Positives = 253/463 (54%), Gaps = 2/463 (0%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           ++  + +A K+F ++P  +VV+W  +I GY++    +    LF+ + R  +  +A + T 
Sbjct: 220 RVGKIVEARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTV 279

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
            L ACG       G+ IH  ++    +    +AN +I MY +C S++ A   F  M+ KD
Sbjct: 280 LLEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKD 339

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           I++WNS+I    ++GNLE A      +P  D +S+  +I G A  G I++ I +   MP 
Sbjct: 340 IVTWNSLITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPE 399

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            ++ +W ++++G V+      A H F +M    +  + +T S +LS  A ++ L  G+ I
Sbjct: 400 KDAIAWTAVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQI 459

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H+ V K  ++  + + ++L+ MYSKCG V+ A  MF  +   N+V +N +ITG A+NG  
Sbjct: 460 HAIVTKMSMENDLSIQNSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLG 519

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409
            + +E+F +++    L P+ +TFL VL+AC H  +  ++   YF+ M   Y I+P  +H 
Sbjct: 520 KEALEIFTKMQD-DYLVPNHITFLGVLSACVHVGL-VEEGRRYFDLMRSLYDIQPEPDHY 577

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469
             M+ L+ + G    A  ++  + F  +  VW A+L AS     LDVA ++A  + +LE 
Sbjct: 578 ACMVDLLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAELAAQNLFELEP 637

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           +S   YV+L NL++  G+     ++R   + RGL+K  GCSWI
Sbjct: 638 NSATPYVILSNLHSISGDERKHELIRLMKKSRGLKKSPGCSWI 680



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 158/319 (49%), Gaps = 43/319 (13%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           TAL+  Y + + +  A ++F +IP P+V S+N++I+ Y +     +A  LF  + +    
Sbjct: 90  TALLTAYAENSEINKAREVFNKIPDPNVASYNAMITAYHRRNMVDEAFELFSSMPQR--- 146

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA-NCLIDMYGKCGSVEDAIG 160
            ++ S+ + +      G   +   +H        E+ V+++ N LI+ Y K G VEDA+ 
Sbjct: 147 -NSVSYATMITGFVHAGMFDMAEKLHR-------EKPVIVSSNVLINGYSKVGRVEDAVR 198

Query: 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220
           +F  M +KD++SW+S+                               I+G+ + G I +A
Sbjct: 199 IFDGMAEKDVVSWSSM-------------------------------ISGLCRVGKIVEA 227

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             +   MP  N  +W  ++ GY+  N + +   LF  M+ + V ++  T + +L      
Sbjct: 228 RKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGSF 287

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
                G+ IH  V+  G D    +A++++ MYS+C  ++ A   F  + +K++VTWN++I
Sbjct: 288 DRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLI 347

Query: 341 TGYARNGDLTKVIELFEQL 359
           TGY ++G+L K + LFE +
Sbjct: 348 TGYVQSGNLEKAVFLFENM 366



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 104/192 (54%), Gaps = 10/192 (5%)

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           K ++  NS I    RNG ++ A    +R+PN +T+S+  ++   A+  +I  A  + + +
Sbjct: 53  KFLVYCNSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKI 112

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
           P PN +S+N+++T Y  RN V EA  LF  M  +    +  +++TM++G           
Sbjct: 113 PDPNVASYNAMITAYHRRNMVDEAFELFSSMPQR----NSVSYATMITGFVHAGMFDMAE 168

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
            +H           IV ++ L++ YSK G+VE A  +F  +  K++V+W++MI+G  R G
Sbjct: 169 KLHR------EKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVG 222

Query: 348 DLTKVIELFEQL 359
            + +  +LF+++
Sbjct: 223 KIVEARKLFDKM 234



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 129/300 (43%), Gaps = 80/300 (26%)

Query: 18  WDTYCQ--QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSL 75
           +D Y +  Q+H  +L  GF  + +++ +++  Y +  S+  A K F  + +  +V+WNSL
Sbjct: 287 FDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSL 346

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135
           I+GYVQSG   KA+ LF  + +     D  S+T+ +  CG                    
Sbjct: 347 ITGYVQSGNLEKAVFLFENMPQK----DVVSWTTLI--CG-------------------- 380

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
                        +   G +++ IG+F  M +KD I+W +VI+        E+AF +  +
Sbjct: 381 -------------FASEGRIDEFIGLFQMMPEKDAIAWTAVISGLVSIEEYEIAFHWFIK 427

Query: 196 L------PNPDTIS---------------------------------YNEVINGIAQFGD 216
           +      PN  T+S                                  N +++  ++ G+
Sbjct: 428 MLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMENDLSIQNSLVSMYSKCGN 487

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           ++DA+ +   +  PN  ++N+I+TG        EAL +F +MQ   +  +  TF  +LS 
Sbjct: 488 VDDALKMFYYIKVPNVVAYNTIITGLAQNGLGKEALEIFTKMQDDYLVPNHITFLGVLSA 547



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 97/191 (50%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + L  +L A + +       Q+H  + K    +++ +  +L+  Y K  ++ DA KM
Sbjct: 435 PNAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMENDLSIQNSLVSMYSKCGNVDDALKM 494

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I  P+VV++N++I+G  Q+G  ++AL +F +++   +  +  +F   L+AC  +G +
Sbjct: 495 FYYIKVPNVVAYNTIITGLAQNGLGKEALEIFTKMQDDYLVPNHITFLGVLSACVHVGLV 554

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G      +   Y ++       C++D+  + G  ++A+ +   M  D     W +V+ 
Sbjct: 555 EEGRRYFDLMRSLYDIQPEPDHYACMVDLLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLG 614

Query: 179 ASARNGNLELA 189
           AS  +  L++A
Sbjct: 615 ASWTHLRLDVA 625


>gi|255559012|ref|XP_002520529.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540371|gb|EEF41942.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 169/552 (30%), Positives = 289/552 (52%), Gaps = 59/552 (10%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N+ V F    AS DLG      QLH  I++ GF SNV + +A++  Y K + +  AH++F
Sbjct: 73  NKVVSFCAKFASYDLG-----IQLHSTIIRMGFTSNVHICSAVVDMYAKCSEIQSAHEVF 127

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            E+P+ + V+WNSLI GY         LN+        +   ++S ++ L  C QL    
Sbjct: 128 NEMPERNDVTWNSLIFGY---------LNVMPTCAMRGV--TSFSVSTCLVVCSQLEVRN 176

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  +H   +K   +  V +   LIDMY KC  V+D+  VF  M+DK++++W +++ A A
Sbjct: 177 FGAQVHGLSLKLGFDNNVFVGTALIDMYSKCDGVDDSWRVFDYMVDKNVVTWTAMVTAYA 236

Query: 182 RNGNLELAFGFLHRLP----NPDTISYNEVINGIA-----QF------------------ 214
           +N   + A   +  +       + ++YN +++  +     Q+                  
Sbjct: 237 QNEQPDEAMILVREMMRLGIKANYVTYNSLLSSFSGPKYMQYCKQVHCSIIRCGLECNLY 296

Query: 215 -------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                         ++ED   I S +   +  SWN+++ GY N     +AL  F EM+  
Sbjct: 297 IAATLVTVYSKCTNNLEDFNKISSGVQLSDQISWNAVIAGYSNLGLGEDALKCFCEMRHA 356

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           ++ MD YTF+++L  I    A+  G  +H+ ++K G  +S+ V + L+ MY++CG ++ +
Sbjct: 357 NIKMDFYTFTSLLGAIGAFLAIEEGREMHALIVKTGYASSVYVQNGLVSMYARCGAIDDS 416

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +   ++V+WNA++TG A +G   + +ELFEQ++  + ++P+S TFL VL+ACSH
Sbjct: 417 KRVFWLMEDHDVVSWNALLTGCAHHGFGNEAVELFEQMRKTK-IKPNSTTFLAVLSACSH 475

Query: 382 TDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
                DK  EYF+ M  D  ++P  VEH  S++ + G+ G +  A+ +I  +       V
Sbjct: 476 VG-SVDKGLEYFDFMRSDISLEPLRVEHYASVVDIFGRAGYLSEAEAIINCMPMDPGPSV 534

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           ++ALLSA     + ++A  SA ++++L  D    Y++L N+  + G WD A+ +R  M +
Sbjct: 535 YKALLSACLVHGNREIAVRSARKLLELWPDDPATYILLSNMLATEGYWDDAADVRKLMCD 594

Query: 501 RGLRKEAGCSWI 512
           RG+RK  G SWI
Sbjct: 595 RGVRKNPGYSWI 606



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 151/323 (46%), Gaps = 40/323 (12%)

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
           +LF  L R+  +++ Y     ++ C +  S  LG+ +HS I++      V I + ++DMY
Sbjct: 55  DLFAHLLRNGSFSNPYFINKVVSFCAKFASYDLGIQLHSTIIRMGFTSNVHICSAVVDMY 114

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAA------------------------------ 179
            KC  ++ A  VF EM +++ ++WNS+I                                
Sbjct: 115 AKCSEIQSAHEVFNEMPERNDVTWNSLIFGYLNVMPTCAMRGVTSFSVSTCLVVCSQLEV 174

Query: 180 ---SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
               A+   L L  GF     + +      +I+  ++   ++D+  +   M   N  +W 
Sbjct: 175 RNFGAQVHGLSLKLGF-----DNNVFVGTALIDMYSKCDGVDDSWRVFDYMVDKNVVTWT 229

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           +++T Y    +  EA+ L  EM    +  +  T++++LS  +G   + +   +H  +I+ 
Sbjct: 230 AMVTAYAQNEQPDEAMILVREMMRLGIKANYVTYNSLLSSFSGPKYMQYCKQVHCSIIRC 289

Query: 297 GLDASIVVASALLDMYSKC-GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
           GL+ ++ +A+ L+ +YSKC   +E  + +   +   + ++WNA+I GY+  G     ++ 
Sbjct: 290 GLECNLYIAATLVTVYSKCTNNLEDFNKISSGVQLSDQISWNAVIAGYSNLGLGEDALKC 349

Query: 356 FEQLKTVRDLQPDSVTFLNVLAA 378
           F +++   +++ D  TF ++L A
Sbjct: 350 FCEMRHA-NIKMDFYTFTSLLGA 371


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 162/517 (31%), Positives = 268/517 (51%), Gaps = 33/517 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    L +A + L       ++  ++L  GF S++FVS A++        L  A KM
Sbjct: 105 PDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKM 164

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +     +VSWNS+I+GYV+ G   +ALN + E++   I  D  +    +++C QL  L
Sbjct: 165 FDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDL 224

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG   H  I +  L+  V +AN L+DMY KCG++E A  +F  M               
Sbjct: 225 DLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMT-------------- 270

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                            N   +S+  ++ G AQ G ++ A  +   MP  +   WN+++ 
Sbjct: 271 -----------------NKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIG 313

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GYV+ NR  EAL LF EMQ+ ++  DE T  + LS  + L AL  G+ IH  + K  L  
Sbjct: 314 GYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSL 373

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           ++ + +AL+DMY+KCG++  A  +F+ L  +N +TW A+I+G A +G+    I  F ++ 
Sbjct: 374 NVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMI 433

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
               + PD VTFL +L+AC H  +  ++  +YF  M+  + + P ++H   M+ L+G+ G
Sbjct: 434 D-NSVMPDEVTFLGLLSACCHGGL-VEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAG 491

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
            +  A+ +I+ +   +  VVW AL  A     ++ +   +A+++++++     +YV+L N
Sbjct: 492 LLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLAN 551

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           +Y     W  A   R  MR+RG+ K  GCS IEV  +
Sbjct: 552 MYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGI 588



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 128/250 (51%), Gaps = 7/250 (2%)

Query: 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE-MQSKDVPMDEY 268
            I+++ D++    IL +  +PN+ SWN  + G+++     EA+ L+   +Q      D Y
Sbjct: 49  AISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNY 108

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           T+  +    A LS +  G  I   V+  G D+ I V++A++ +   CG ++ A  MF   
Sbjct: 109 TYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKS 168

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIPFD 387
           C ++LV+WN+MI GY R G   + +  + ++K V  ++PD VT + V+++C+   D+   
Sbjct: 169 CVRDLVSWNSMINGYVRRGWAYEALNFYREMK-VEGIKPDEVTMIGVVSSCAQLEDLDLG 227

Query: 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
           + S  +    ++ G+K TV    +++ +  + G +  A+++   +   +  V W  ++  
Sbjct: 228 RESHCY---IEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTM-VSWTTMVVG 283

Query: 448 SGACSDLDVA 457
                 LD+A
Sbjct: 284 YAQSGLLDMA 293


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 166/590 (28%), Positives = 297/590 (50%), Gaps = 77/590 (13%)

Query: 1   PNEYVLFHLLRASSDLGW-DTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           PN +++  L+ A S  G+      Q+H +++K+G L +V+V TAL+ FY  I  + +A K
Sbjct: 372 PNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQK 431

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F E+P  +VVSW SL+ GY  SG   + LN++  + +  +  +  +F +  ++CG L  
Sbjct: 432 LFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLED 491

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
             LG  +   I++Y  E  V +AN LI M+    SVE+A  VF  M + DIISWN++I+A
Sbjct: 492 QVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISA 551

Query: 180 SARNGNLELA---FGFLHRLPNP----------------DTISYNEVINGI--------- 211
            A +G    +   F ++  L N                 D + +   I+G+         
Sbjct: 552 YAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSN 611

Query: 212 -----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-- 258
                      ++ G  EDA ++  +M   +  SWNS++  YV   +  + L +  E+  
Sbjct: 612 VCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQ 671

Query: 259 --------------------------------QSKDVPMDEYTFSTMLSGIAGLSALTWG 286
                                           + K +P +  T  + L+  A L+ L  G
Sbjct: 672 MGKPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVS-LAATANLAVLEEG 730

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
             +H  VIK G ++ + V +A +DMY KCG++     M      ++ ++WN +I+ +AR+
Sbjct: 731 QQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARH 790

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           G   K  E F ++  +   +PD VTF+++L+AC+H  +  D+   Y++SMT+++G+ P +
Sbjct: 791 GCFQKARETFHEMLKLGP-KPDHVTFVSLLSACNHGGL-VDEGLAYYDSMTREFGVFPGI 848

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
           EHC  +I L+G+ G +  A+  I+E+      + WR+LL+A     +L++AR +A  +++
Sbjct: 849 EHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLE 908

Query: 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           L+   D  YV+  N+  + G W+    +R  M    ++K+  CSW+++++
Sbjct: 909 LDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKD 958



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 173/361 (47%), Gaps = 20/361 (5%)

Query: 38  VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER 97
           V  + AL+ F+ K   + DA  +F  + +  VVSWN++I GY   G    +  +F  + R
Sbjct: 127 VKANHALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLR 186

Query: 98  SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED 157
             +  D Y+  S L A  + G L +   IH  I +       ++   LI+ Y K GS+  
Sbjct: 187 GGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRS 246

Query: 158 AIGVFGEMIDKDIIS----------------WNSVIAASARNGNLELAFGFLHRLPNPDT 201
           A  +   M+ KD+ S                 N++I   A++G +E A      +   + 
Sbjct: 247 AKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNV 306

Query: 202 ISYNEVINGIAQ--FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           IS+  +I+G A+  +G +  A  +   M   N +SW+++L+GYV      EA+ LF +M 
Sbjct: 307 ISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMW 366

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALT-WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
              V  + +  +++++  +    +   G  +H  V+K G+   + V +AL+  Y   G V
Sbjct: 367 GLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLV 426

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
             A  +F  +   N+V+W +++ GY+ +G+  +V+ ++++++    +  +  TF  V ++
Sbjct: 427 YNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQ-EGVSGNQNTFATVTSS 485

Query: 379 C 379
           C
Sbjct: 486 C 486



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 102/449 (22%), Positives = 194/449 (43%), Gaps = 105/449 (23%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H +++ +GF S++ ++T L+ FY K+  +  A  +F  +P+ SVVSW +++SGY Q+G+
Sbjct: 52  IHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGR 111

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           + KA  LF ++                                          GV   + 
Sbjct: 112 FEKAFVLFSDMRHC---------------------------------------GVKANHA 132

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PD 200
           L+D + KCG +EDA  +FG M+++D++SWN++I   A  G  + +F     +      PD
Sbjct: 133 LVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPD 192

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTG-----YVNRNRVPEALHLF 255
             +   V+   A+ G +  A  I   +      S++ I+TG     Y     +  A  L 
Sbjct: 193 CYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYD-IVTGLLINAYAKNGSLRSAKDLR 251

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
             M  KD+    ++ + +++G A     T G                   +AL+DMY+K 
Sbjct: 252 KGMLKKDL----FSSTALITGYAHEGIYTMG-------------------NALIDMYAKS 288

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARN--GDLTKVIELFEQLKTVRD--------- 364
           G++E A   F  +  KN+++W ++I+GYA++  G +     +F++++   +         
Sbjct: 289 GEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSG 348

Query: 365 ---------------------LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
                                ++P+     +++ ACS +    D+  +    + K  GI 
Sbjct: 349 YVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKT-GIL 407

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
             V    +++   G  G V+ AQ++  E+
Sbjct: 408 GDVYVGTALVHFYGSIGLVYNAQKLFEEM 436



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 179/390 (45%), Gaps = 33/390 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y L  +LRAS++ G      Q+H  I + G+ S   V+  L+  Y K  SL  A  +
Sbjct: 191 PDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDL 250

Query: 61  FVEIPQPSVVSWNSLISGYV----------------QSGKYRKALNLFVELERSEIYADA 104
              + +  + S  +LI+GY                 +SG+   A   F E+E   +    
Sbjct: 251 RKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNV---- 306

Query: 105 YSFTSALAACGQLGSLQLGMAIHSKIVKYSL-ERGVVIANCLIDMYGKCGSVEDAIGVFG 163
            S+TS ++   + G    G   H++ V   +  R     + ++  Y + G  E+A+G+F 
Sbjct: 307 ISWTSLISGYAKHG---YGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFC 363

Query: 164 EM----IDKDIISWNSVIAASARNGNLE----LAFGFLHRLPN-PDTISYNEVINGIAQF 214
           +M    ++ +     S+I A +R+G +        GF+ +     D      +++     
Sbjct: 364 QMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSI 423

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G + +A  +   MP  N  SW S++ GY +     E L+++  M+ + V  ++ TF+T+ 
Sbjct: 424 GLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVT 483

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
           S    L     G  +   +I+ G + S+ VA++L+ M+S    VE A  +F  +   +++
Sbjct: 484 SSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDII 543

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRD 364
           +WNAMI+ YA +G   + +  F  ++ + +
Sbjct: 544 SWNAMISAYAHHGLCRESLRCFHWMRHLHN 573



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 133/287 (46%), Gaps = 6/287 (2%)

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+  +AL L   L  +    D   +   L  C    + + G  IH+ ++       + + 
Sbjct: 12  GRLAEALKL---LSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLN 68

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
             LI  Y K G V  A  VF  M ++ ++SW ++++  ++NG  E AF     + +    
Sbjct: 69  TKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVK 128

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
           + + +++  ++ G +EDA  +  +M   +  SWN+++ GY  +    ++  +F  M    
Sbjct: 129 ANHALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGG 188

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +  D YT  ++L   A    L     IH  + + G  +  +V   L++ Y+K G +  A 
Sbjct: 189 LVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAK 248

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLT---KVIELFEQLKTVRDLQ 366
            + + + +K+L +  A+ITGYA  G  T    +I+++ +   + D +
Sbjct: 249 DLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAK 295


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/475 (31%), Positives = 249/475 (52%), Gaps = 32/475 (6%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           TA++  Y +   L +A ++F E+P+ + +SW+++I+ Y QSG   +AL LF ++ +    
Sbjct: 254 TAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFK 313

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            +   F   L+A   L +L  G+ IH  + K  +++ V I + LID+Y KCG  +D   V
Sbjct: 314 PNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLV 373

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F  +++K+++ WNS++   + NG LE                                  
Sbjct: 374 FDLILEKNVVCWNSMVGGYSINGRLEEX-------------------------------E 402

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   +P  N  SW +IJ GY+   +  + L +F  +       ++ TFS++L   A ++
Sbjct: 403 ELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIA 462

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           +L  GM +H  +IK G+   I V +AL DMY+KCG +  +  +F  +  KN ++W  MI 
Sbjct: 463 SLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQ 522

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G A +G   + + LFE+++   ++ P+ +  L+VL ACSH  +  DK   YF SM K YG
Sbjct: 523 GLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGL-VDKGLWYFNSMEKVYG 581

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           IKP  +H   ++ L+ + G ++ A+  IR + F      W ALLS      D  +A  +A
Sbjct: 582 IKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTA 641

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++ +L  ++   YV+L N+Y S G W   S +R  MRE+GL+K  GCSW+EV N
Sbjct: 642 KKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRN 696



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 170/370 (45%), Gaps = 63/370 (17%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           +AL+    K   + ++   F   P  +VVSW + ISG+V++G   +AL LF  L  S + 
Sbjct: 122 SALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVR 181

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            +  +FTS + ACG+LG   LGM+I   +VK   E  + ++N LI +             
Sbjct: 182 PNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITL------------- 228

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
                             S R G ++LA     R+   D +S+  +++   + GD+ +A 
Sbjct: 229 ------------------SLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREAR 270

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            I   MP  N  SW++++  Y       EAL LF +M  +    +   F+  LS +A L 
Sbjct: 271 RIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLR 330

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL+ G+ IH  V K G+D  + + S+L+D+Y KCG+ +    +F  +  KN+V WN+M+ 
Sbjct: 331 ALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVG 390

Query: 342 GYARNG-------------------------------DLTKVIELFEQLKTVRDLQPDSV 370
           GY+ NG                                  KV+E+F  L  V    P+  
Sbjct: 391 GYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTL-LVSGQTPNKS 449

Query: 371 TFLNVLAACS 380
           TF +VL AC+
Sbjct: 450 TFSSVLCACA 459



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 151/310 (48%), Gaps = 7/310 (2%)

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           +    A A +  S L      G +  G  +H+ ++K        IA  L+ +Y  C    
Sbjct: 14  KKSFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFA 73

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           +   +  E    D++  N +I+A  + GNL  A      +P  + +S++ +I+G+ ++G 
Sbjct: 74  EIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGR 133

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           +E+++      P  N  SW + ++G+V      EAL LF  +    V  ++ TF++++  
Sbjct: 134 VEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRA 193

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
              L     GM I   V+K G +  + V+++L+ +  + G++++A  +F  + ++++V+W
Sbjct: 194 CGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSW 253

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
            A++  Y   GDL +   +F+++      + + +++  ++A  S +    ++  + F  M
Sbjct: 254 TAILDAYVETGDLREARRIFDEMP-----ERNEISWSAMIARYSQSGYA-EEALKLFSKM 307

Query: 397 TKDYGIKPTV 406
            ++ G KP +
Sbjct: 308 VQE-GFKPNI 316


>gi|356565918|ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Glycine max]
          Length = 703

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 170/536 (31%), Positives = 269/536 (50%), Gaps = 44/536 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           QQLH  +LK G   NVF  +AL+  Y K   + D + +F  +P+ + VSWN+L++ Y + 
Sbjct: 114 QQLHSVMLKVGLSENVFSGSALLDMYAKCGRVDDGYVVFQSMPERNYVSWNTLVASYSRV 173

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G    A  +   +E   +  D  + +  L         +L M +H KIVK+ LE    + 
Sbjct: 174 GDCDMAFWVLSCMELEGVEIDDGTVSPLLTLLDNAMFYKLTMQLHCKIVKHGLELFNTVC 233

Query: 143 NCLIDMYGKCGSVEDAIGVF-GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN--- 198
           N  I  Y +C S++DA  VF G ++ +D+++WNS++ A   +   +LAF     + N   
Sbjct: 234 NATITAYSECCSLQDAERVFDGAVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGF 293

Query: 199 -PDTISY-----------------------------------NEVINGIAQFGD--IEDA 220
            PD  +Y                                   N +I+   +F D  +EDA
Sbjct: 294 EPDAYTYTGIVGACSVQEHKTCGKCLHGLVIKRGLDNSVPVSNALISMYIRFNDRCMEDA 353

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
           + I  SM   +  +WNSIL GYV      +AL LF +M+   + +D YTFS ++   + L
Sbjct: 354 LRIFFSMDLKDCCTWNSILAGYVQVGLSEDALRLFLQMRCLVIEIDHYTFSAVIRSCSDL 413

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           + L  G   H   +K G D +  V S+L+ MYSKCG +E A   F +  + N + WN++I
Sbjct: 414 ATLQLGQQFHVLALKVGFDTNSYVGSSLIFMYSKCGIIEDARKSFEATSKDNAIVWNSII 473

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
            GYA++G     ++LF  +K  R ++ D +TF+ VL ACSH  +  ++   + ESM  D+
Sbjct: 474 FGYAQHGQGNIALDLFYMMKE-RKVKLDHITFVAVLTACSHNGL-VEEGCNFIESMESDF 531

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
           GI P  EH    I L G+ G + +A  ++  + F    +V + LL A   C D+++A   
Sbjct: 532 GIPPRQEHYACAIDLYGRAGHLKKATALVETMPFEPDAMVLKTLLGACRFCGDIELASQI 591

Query: 461 AAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           A  +++LE +    YV+L  +Y     W   + +   MRERG++K  G SWIEV+N
Sbjct: 592 AKILLELEPEEHCTYVILSEMYGRFKMWGEKASVTRMMRERGVKKVPGWSWIEVKN 647



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 121/463 (26%), Positives = 218/463 (47%), Gaps = 48/463 (10%)

Query: 26  HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKY 85
           HC  +K G +++ + +  L+  Y K   L  AH++F E+P    VSWN++IS +  SG  
Sbjct: 16  HCRAIKLGSIADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDL 75

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
                L   + RS    D+ +F S L     +G L+LG  +HS ++K  L   V   + L
Sbjct: 76  DTTWQLLGAMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSGSAL 135

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL------------ 193
           +DMY KCG V+D   VF  M +++ +SWN+++A+ +R G+ ++AF  L            
Sbjct: 136 LDMYAKCGRVDDGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEIDD 195

Query: 194 ----------------------------HRLPNPDTISYNEVINGIAQFGDIEDAIMILS 225
                                       H L   +T+  N  I   ++   ++DA  +  
Sbjct: 196 GTVSPLLTLLDNAMFYKLTMQLHCKIVKHGLELFNTVC-NATITAYSECCSLQDAERVFD 254

Query: 226 -SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
            ++   +  +WNS+L  Y+   +   A  +F +MQ+     D YT++ ++   +     T
Sbjct: 255 GAVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIVGACSVQEHKT 314

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM--FRSLCRKNLVTWNAMITG 342
            G  +H  VIK+GLD S+ V++AL+ MY +     + D++  F S+  K+  TWN+++ G
Sbjct: 315 CGKCLHGLVIKRGLDNSVPVSNALISMYIRFNDRCMEDALRIFFSMDLKDCCTWNSILAG 374

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           Y + G     + LF Q++ +  ++ D  TF  V+ +CS  D+   ++ + F  +    G 
Sbjct: 375 YVQVGLSEDALRLFLQMRCLV-IEIDHYTFSAVIRSCS--DLATLQLGQQFHVLALKVGF 431

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
                   S+I +  + G +  A++   E       +VW +++
Sbjct: 432 DTNSYVGSSLIFMYSKCGIIEDARKSF-EATSKDNAIVWNSII 473



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 117/235 (49%), Gaps = 6/235 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINS--LADAH 58
           P+ Y    ++ A S     T  + LH  ++K G  ++V VS AL+  Y + N   + DA 
Sbjct: 295 PDAYTYTGIVGACSVQEHKTCGKCLHGLVIKRGLDNSVPVSNALISMYIRFNDRCMEDAL 354

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           ++F  +      +WNS+++GYVQ G    AL LF+++    I  D Y+F++ + +C  L 
Sbjct: 355 RIFFSMDLKDCCTWNSILAGYVQVGLSEDALRLFLQMRCLVIEIDHYTFSAVIRSCSDLA 414

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           +LQLG   H   +K   +    + + LI MY KCG +EDA   F      + I WNS+I 
Sbjct: 415 TLQLGQQFHVLALKVGFDTNSYVGSSLIFMYSKCGIIEDARKSFEATSKDNAIVWNSIIF 474

Query: 179 ASARNGN----LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
             A++G     L+L +    R    D I++  V+   +  G +E+    + SM S
Sbjct: 475 GYAQHGQGNIALDLFYMMKERKVKLDHITFVAVLTACSHNGLVEEGCNFIESMES 529



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 134/298 (44%), Gaps = 43/298 (14%)

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
           +A H + +K         AN LI  Y KC  +  A  VF EM  +D +SWN++I+A A +
Sbjct: 13  IATHCRAIKLGSIADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASS 72

Query: 184 GNLELAFGFLHRLPNP----DTISYNEVINGI---------------------------- 211
           G+L+  +  L  +       D+ ++  ++ G+                            
Sbjct: 73  GDLDTTWQLLGAMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSG 132

Query: 212 -------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
                  A+ G ++D  ++  SMP  N  SWN+++  Y        A  +   M+ + V 
Sbjct: 133 SALLDMYAKCGRVDDGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVE 192

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
           +D+ T S +L+ +         M +H  ++K GL+    V +A +  YS+C  ++ A+ +
Sbjct: 193 IDDGTVSPLLTLLDNAMFYKLTMQLHCKIVKHGLELFNTVCNATITAYSECCSLQDAERV 252

Query: 325 FRS--LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           F    LCR +LVTWN+M+  Y  +       ++F  ++     +PD+ T+  ++ ACS
Sbjct: 253 FDGAVLCR-DLVTWNSMLGAYLMHEKEDLAFKVFLDMQNF-GFEPDAYTYTGIVGACS 308


>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 153/490 (31%), Positives = 269/490 (54%), Gaps = 3/490 (0%)

Query: 29  ILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKA 88
           +++S   S+ FV   L+  Y +  +   AHK+F EI QP+   W SLI GYV++ +Y +A
Sbjct: 26  LIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEA 85

Query: 89  LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
            +LF+++ R  I    ++ +S L A  +L   + G A++        E+ +V  N +I  
Sbjct: 86  FSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFAFDEMCEKDIVSWNMMISG 145

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVI 208
           YG    V+ A   F  M +++++SW S+I    + G++  A      +P  D  S+N ++
Sbjct: 146 YGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMV 205

Query: 209 NGIAQFGDIED-AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
           +G    GD  + A  +   MP  N  +W++++ GY    +  +AL LF   + +D+  DE
Sbjct: 206 SGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDE 265

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
                ++S  + L  +     I    +   L + + V ++L+DMY+KCG +E A  MF  
Sbjct: 266 TFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEM 325

Query: 328 LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387
              K+L+ ++ MI   A +G     I LF++++   +++PDSVTFL VL AC+H  +  D
Sbjct: 326 AHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRA-NIKPDSVTFLGVLTACNHGGL-VD 383

Query: 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
           +  +YF+ MT+++GI+P+ +H   ++ L+G+ G +  A  +IR +    + VVW ALL+A
Sbjct: 384 EGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAA 443

Query: 448 SGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEA 507
                ++ +A ++AAE+ K+E D+   Y++L N+Y + G W   + +R  +RE  +RK  
Sbjct: 444 CRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNR 503

Query: 508 GCSWIEVENV 517
           G SWIE+ +V
Sbjct: 504 GSSWIELSHV 513


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 170/533 (31%), Positives = 264/533 (49%), Gaps = 45/533 (8%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q H  I+K     N+FV  AL+  Y K  +L DA ++F  +     VSWN++I GYVQ  
Sbjct: 449 QFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGGYVQDE 508

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
              +A +LF+ +    I +D     S L AC  +  L  G  +H   VK  L+R +   +
Sbjct: 509 NESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGS 568

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNP 199
            LIDMY KCG +EDA  VF  M +  ++S N++IA  ++N NLE A      +     NP
Sbjct: 569 SLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQN-NLEEAVVLFQEMLTKGVNP 627

Query: 200 DTISYNEVIN------------------------------GIAQFG------DIEDAIMI 223
             I++  ++                               GI+  G       + +A  +
Sbjct: 628 SEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACAL 687

Query: 224 LSSMPSPNSSS-WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
            S + SP S   W  +++G+       EAL  + EM+      D+ TF T+L   + LS+
Sbjct: 688 FSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSS 747

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK-NLVTWNAMIT 341
           L  G  IHS +     D   + ++ L+DMY+KCG ++ +  +F  + R+ N+V+WN++I 
Sbjct: 748 LREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLIN 807

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYA+NG     +++F+ ++    + PD +TFL VL ACSH     D   + FE M   YG
Sbjct: 808 GYAKNGYAEDALKIFDSMRQSH-IMPDEITFLGVLTACSHAGKVSDG-RKIFEMMIGQYG 865

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I+  V+H   M+ L+G+ G +  A   I          +W +LL A     D     I+A
Sbjct: 866 IEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDMRGEIAA 925

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
             +I+LE  +   YV+L N+Y S G W+ A+ +R  MR+RG++K  G SWI+V
Sbjct: 926 ERLIELEPQNSSAYVLLSNIYASQGRWEEANALRKAMRDRGVKKVPGYSWIDV 978



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 191/362 (52%), Gaps = 6/362 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H   L  G  S   +  A++  Y K   ++ A K F  + +  V +WNS++S Y   
Sbjct: 80  KAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSMLSMYSSI 138

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+  K L  FV L  + I+ + ++F+  L+   +  +++ G  IH  ++K  LER     
Sbjct: 139 GQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCG 198

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
             L+DMY KC  + DA  VF  ++D + + W  + +   + G  E A     R+      
Sbjct: 199 GALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHR 258

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
           PD +++  VIN     G ++DA ++   MPSP+  +WN +++G+  R     A+  F  M
Sbjct: 259 PDHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNM 318

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           +   V     T  ++LS I  ++ L  G+++H+  IK GL ++I V S+L+ MYSKC ++
Sbjct: 319 RKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKM 378

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           E A  +F +L  +N V WNAMI GYA NG+  KV+ELF  +K+      D  TF ++L+ 
Sbjct: 379 EAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKS-SGYNIDDFTFTSLLST 437

Query: 379 CS 380
           C+
Sbjct: 438 CA 439



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 191/390 (48%), Gaps = 15/390 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++    +L  S+      + +Q+HC ++K G   N +   AL+  Y K + L DA ++
Sbjct: 158 PNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRV 217

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I  P+ V W  L SGYV++G   +A+ +F  +       D  +F + +     LG L
Sbjct: 218 FDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINTYISLGKL 277

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS----WNSV 176
           +    +  ++        VV  N +I  +GK G    AI  F  M    + S      SV
Sbjct: 278 KDARLLFGEMPSPD----VVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSV 333

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYN-----EVINGIAQFGDIEDAIMILSSMPSPN 231
           ++A     NL+L    +H       ++ N      +++  ++   +E A  +  ++   N
Sbjct: 334 LSAIGIVANLDLGL-VVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERN 392

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              WN+++ GY +     + + LF +M+S    +D++TF+++LS  A    L  G   HS
Sbjct: 393 DVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHS 452

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
            +IK+ L  ++ V +AL+DMY+KCG +E A  +F  +C ++ V+WN +I GY ++ + ++
Sbjct: 453 IIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGGYVQDENESE 512

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +LF ++ +   +  D     + L AC++
Sbjct: 513 AFDLFMRMNSC-GIVSDGACLASTLKACTN 541



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 166/370 (44%), Gaps = 45/370 (12%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+HC  +K G    +   ++L+  Y K   + DA K+F  +P+ SVVS N+LI+GY Q+
Sbjct: 549 KQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQN 608

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL-ERGVVI 141
               +A+ LF E+    +     +F + + AC +  SL LG   H +I+K+     G  +
Sbjct: 609 -NLEEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYL 667

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIAASARNGNLELAFGF-------- 192
              L+ +Y     + +A  +F E+   K I+ W  +++  ++NG  E A  F        
Sbjct: 668 GISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDG 727

Query: 193 -------------------------------LHRLPNPDTISYNEVINGIAQFGDIEDAI 221
                                           H   + D ++ N +I+  A+ GD++ + 
Sbjct: 728 ALPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSS 787

Query: 222 MILSSM-PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
            +   M    N  SWNS++ GY       +AL +F  M+   +  DE TF  +L+  +  
Sbjct: 788 QVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHA 847

Query: 281 SALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNA 338
             ++ G  I   +I Q G++A +   + ++D+  + G ++ AD    +   + +   W++
Sbjct: 848 GKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSS 907

Query: 339 MITGYARNGD 348
           ++     +GD
Sbjct: 908 LLGACRIHGD 917



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 166/390 (42%), Gaps = 80/390 (20%)

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           +L++G A+HSK +   ++    + N ++D+Y KC  V                       
Sbjct: 75  ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQV----------------------- 111

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
                                   SY E      QF  +E  +           ++WNS+
Sbjct: 112 ------------------------SYAE-----KQFNSLEKDV-----------TAWNSM 131

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           L+ Y +  +  + L  F  +    +  +++TFS +LS  A  + + +G  IH  +IK GL
Sbjct: 132 LSMYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGL 191

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
           + +     AL+DMY+KC ++  A  +F  +   N V W  + +GY + G   + + +FE+
Sbjct: 192 ERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFER 251

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRL 415
           ++     +PD + F+ V+    +T I   K+ +    F  M       P V     MI  
Sbjct: 252 MRG-EGHRPDHLAFVTVI----NTYISLGKLKDARLLFGEMPS-----PDVVAWNVMISG 301

Query: 416 MGQKG-EVWRAQRMI--RELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472
            G++G E+   +  +  R+    S      ++LSA G  ++LD+  +  AE IKL   S+
Sbjct: 302 HGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASN 361

Query: 473 -YVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            YV   L ++Y+     + A+ +   + ER
Sbjct: 362 IYVGSSLVSMYSKCEKMEAAAKVFEALEER 391


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 164/557 (29%), Positives = 291/557 (52%), Gaps = 43/557 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    ++++ S L      +QLH ++LKS F +++    AL+  Y K + +ADA  +
Sbjct: 197 PDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINV 256

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY-ADAYSFTSALAACGQLGS 119
           F  I    ++SW S+I+G+ Q G   +AL  F E+    +Y  + + F SA +AC +L  
Sbjct: 257 FSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLE 316

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
              G  IH   +K+ L   +     L DMY KCG +E A  VF  +   D+++WN++IA 
Sbjct: 317 PDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAG 376

Query: 180 SARNGNLELAFGFLHRL------PNPDTI--------------------SY--------- 204
            A   N + +  F  ++      PN  T+                    SY         
Sbjct: 377 FASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLD 436

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSP-NSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
               N +++  ++  ++ DA+ +   + +  +  SWN++LT  + +N+  E L L   M 
Sbjct: 437 IPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMF 496

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           +  +  D  T + +L     +++   G  IH  ++K GL+  I V++AL++MY+KCG +E
Sbjct: 497 ASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLE 556

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  MF S+   ++++W+++I GYA+ G   +  ELF  ++ +  ++P+ +TF+ +L AC
Sbjct: 557 CARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGL-GVKPNEITFVGILTAC 615

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH  +  + +  Y  +M +DY I PT EHC  M+ L+ + G +  A+  IR++ F    V
Sbjct: 616 SHIGMVEEGLKLY-RTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIRQMPFVPDVV 674

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           VW+ LL+A     +L+V + +A  V+K++  +    VMLCN++ S G+W   + +R+ MR
Sbjct: 675 VWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMR 734

Query: 500 ERGLRKEAGCSWIEVEN 516
              + K  G SWIE+++
Sbjct: 735 RMDVGKVPGQSWIEIKD 751



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 123/470 (26%), Positives = 219/470 (46%), Gaps = 50/470 (10%)

Query: 8   HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP 67
           HL+ A S L    + +++H ++L   +  ++ +   ++  Y K  SL +A  MF  +P  
Sbjct: 103 HLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLK 162

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
           +VVSW S+ISGY + G+   A+ L+V++ RS    D ++F S + +C  L   +L   +H
Sbjct: 163 NVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLH 222

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-NL 186
           + ++K      ++  N LI MY K   + DAI VF  +I KD+ISW S+IA  ++ G  L
Sbjct: 223 AHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYEL 282

Query: 187 EL----------------------AFGFLHRLPNPDTISYNEVINGI------------- 211
           E                       AF    +L  PD       I+G+             
Sbjct: 283 EALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDC---GRQIHGLCIKFGLGSDLFAG 339

Query: 212 -------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
                  A+ G +E A  +   +  P+  +WN+I+ G+ + +   E+   F +M+   + 
Sbjct: 340 CSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLV 399

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
            ++ T  ++L   +    L  G+ +HS ++K G +  I V ++LL MYSKC  +  A  +
Sbjct: 400 PNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQV 459

Query: 325 FRSLCRK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           F  +  K ++V+WN ++T   +     +V+ L + +   R ++PD VT  NVL   S   
Sbjct: 460 FEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASR-IKPDHVTLTNVLV--SSGQ 516

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
           I   +V           G+   +    ++I +  + G +  A++M   +G
Sbjct: 517 IASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIG 566



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 217/466 (46%), Gaps = 62/466 (13%)

Query: 87  KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
           KA ++F +   S +   + ++T  + AC  L SL+ G  IH  ++  + +  +++ N ++
Sbjct: 83  KAFDIFQKCSSSPL--KSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHIL 140

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE------------------L 188
            MYGKCGS+++A  +F  M  K+++SW S+I+  +R G  +                   
Sbjct: 141 SMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHF 200

Query: 189 AFGFL------------------HRLPN---PDTISYNEVINGIAQFGDIEDAIMILSSM 227
            FG +                  H L +    D I+ N +I+   +F  + DAI + S +
Sbjct: 201 TFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRI 260

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV-PMDEYTFSTMLSGIAGLSALTWG 286
              +  SW S++ G+       EAL  F EM S+ V   +E+ F +  S  + L     G
Sbjct: 261 IIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCG 320

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
             IH   IK GL + +    +L DMY+KCG +E A ++F  + + +LV WNA+I G+A  
Sbjct: 321 RQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASV 380

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD--KVSEYFESMTKDYGIKP 404
            +  +    F Q++    L P+ VT L++L ACS   +     +V  Y   M    G   
Sbjct: 381 SNAKESSSFFSQMRHT-GLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKM----GFNL 435

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA----SGACSDLDVARIS 460
            +  C S++ +  +   +  A ++  ++G  +  V W  LL+A    + A   L + ++ 
Sbjct: 436 DIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLM 495

Query: 461 AAEVIKLEGDSDYVYVMLCNLYTSHG---NWDVASVMRNFMRERGL 503
            A  IK +      +V L N+  S G   +++V S +  F+ + GL
Sbjct: 496 FASRIKPD------HVTLTNVLVSSGQIASYEVGSQIHCFIMKSGL 535



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 76/141 (53%), Gaps = 2/141 (1%)

Query: 244 NRNRVPEALHLFGEMQS-KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
            +N   EAL  F   Q     P+   T++ +++  + L +L  G  IH  ++       +
Sbjct: 74  KKNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDM 133

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
           ++ + +L MY KCG ++ A +MF S+  KN+V+W +MI+GY+R G+    I L+ Q+   
Sbjct: 134 ILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRS 193

Query: 363 RDLQPDSVTFLNVLAACSHTD 383
             + PD  TF +++ +CS  D
Sbjct: 194 GHI-PDHFTFGSIVKSCSGLD 213


>gi|297736926|emb|CBI26127.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 166/569 (29%), Positives = 274/569 (48%), Gaps = 95/569 (16%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL 95
           S++F +T+ +    K+  +  A ++F E+P    V+WN++++ Y Q G +++AL LF  +
Sbjct: 3   SHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHM 62

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
             +    D ++FT+ L+AC  LG L+ GM IH+++V    +  + + N LIDMYGKC S 
Sbjct: 63  RIANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSA 122

Query: 156 EDAIGVFGEM------------------------------IDKDI-ISWNSVIAASARNG 184
             A  VF EM                              + K + I+WN +I+   + G
Sbjct: 123 TSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCG 182

Query: 185 NLELAFGFLHRLP----NPDT--------------------------------------- 201
           ++EL  G   ++      PD                                        
Sbjct: 183 DVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVFE 242

Query: 202 -------ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
                  +S+N +I+   + GD  +A ++    P  N  SW S++TGY       +AL  
Sbjct: 243 SIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSF 302

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F +M    +  D++TF  +L   + L+ L  G +IH  +I  G  A + V + L++MY+K
Sbjct: 303 FVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAK 362

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG ++ +++ F+ +  K+LV+WNAM+ G   +G  T+ +EL+E++     ++PD VTF+ 
Sbjct: 363 CGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEM-VASGMKPDKVTFIG 421

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           +L  CSH+ +  +K    FESM   YG+    EH   M+ L+G+ G + +A+ ++ E   
Sbjct: 422 LLMTCSHSGL-IEKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQARELVDE--- 477

Query: 435 GSYGVVWRALLSAS----GACSDLDVARISA--AEVIKL-EGDSDYVYVMLCNLYTSHGN 487
             Y    RA  S      GAC      R+ A   E +K+ E   +  YV+L NLY   G 
Sbjct: 478 --YSRTGRAETSLPEALLGACFAHSEVRMGANLGEYLKVFEPQKEMSYVLLSNLYCVSGQ 535

Query: 488 WDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           W  A ++R  M + G++K  GCSWIEV N
Sbjct: 536 WKEAEMVRKTMTDHGVKKMPGCSWIEVRN 564



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 15/244 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGF--LSNVFVS---------TALMGFYR 49
           P+++    L+ A  +L   +Y   +H +I+KSG+  +  VF S          A++  + 
Sbjct: 201 PDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVFESIGILTQVSWNAMIDAHM 260

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           KI    +A  +F   P+ +VVSW S+I+GY ++G   +AL+ FV++  + I  D ++F +
Sbjct: 261 KIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGA 320

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
            L AC  L +L  G  IH  I+ Y     V + N L++MY KCG ++ +   F E++ KD
Sbjct: 321 VLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGKD 380

Query: 170 IISWNSVIAASARNGN----LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILS 225
           ++SWN+++     +G+    LEL    +     PD +++  ++   +  G IE    +  
Sbjct: 381 LVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLIEKGQALFE 440

Query: 226 SMPS 229
           SM S
Sbjct: 441 SMVS 444



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 1/159 (0%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +L A S L    + + +H  I+  GF + V V   L+  Y K   +  ++  
Sbjct: 313 PDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTA 372

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EI    +VSWN+++ G    G   +AL L+ E+  S +  D  +F   L  C   G +
Sbjct: 373 FKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLI 432

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDA 158
           + G A+   +V  Y L +      C++D+ G+ G +  A
Sbjct: 433 EKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQA 471


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 172/550 (31%), Positives = 276/550 (50%), Gaps = 41/550 (7%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65
           L HLL  ++ L    +  Q+H  ++ +   +++     L+  Y K  S+     +F   P
Sbjct: 100 LKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYP 159

Query: 66  QPS--VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
            PS  VV+W +LI+   +S K  +AL  F  +  + IY + ++F++ L AC     L  G
Sbjct: 160 HPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEG 219

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
             IH+ I K+       +A  L+DMY KCGS+  A  VF EM  ++++SWNS+I    +N
Sbjct: 220 QQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKN 279

Query: 184 GNLELAFGFLHRLPN--PDTISYNEVINGIA----------------------------- 212
                A G    + +  PD +S + V++  A                             
Sbjct: 280 KLYGRAIGVFREVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNS 339

Query: 213 ------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
                 + G  EDA  +       +  +WN ++ G        +A   F  M  + V  D
Sbjct: 340 LVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPD 399

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
           E ++S++    A ++ALT G +IHS V+K G   +  ++S+L+ MY KCG +  A  +FR
Sbjct: 400 EASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFR 459

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
                N+V W AMIT + ++G   + I+LFE++     + P+ +TF++VL+ACSHT    
Sbjct: 460 ETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLN-EGVVPEYITFVSVLSACSHTG-KI 517

Query: 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
           D   +YF SM   + IKP +EH   M+ L+G+ G +  A R I  + F    +VW ALL 
Sbjct: 518 DDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLG 577

Query: 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506
           A G  +++++ R  A  + KLE D+   Y++L N+Y  HG  + A  +R  M   G+RKE
Sbjct: 578 ACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKE 637

Query: 507 AGCSWIEVEN 516
           +GCSWI+V+N
Sbjct: 638 SGCSWIDVKN 647



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 153/344 (44%), Gaps = 31/344 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  +  +L A + L    + +Q+H  I+K G +  V+V  +L+  Y K     DA K+
Sbjct: 297 PDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKL 356

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F       VV+WN +I G  +   + +A   F  + R  +  D  S++S   A   + +L
Sbjct: 357 FCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAAL 416

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IHS ++K    +   I++ L+ MYGKCGS+ DA  VF E  + +++ W ++I   
Sbjct: 417 TQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVF 476

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
            ++G    A      + N    P+ I++  V++  +  G I+D     +SM     ++ +
Sbjct: 477 HQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSM-----ANVH 531

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           +I  G  +   + + L   G ++     ++   F           +L WG L+ +C    
Sbjct: 532 NIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEP--------DSLVWGALLGACGKHA 583

Query: 297 GLDASIVVASALL--------------DMYSKCGQVEIADSMFR 326
            ++    VA  L               ++Y + G +E AD + R
Sbjct: 584 NVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRR 627


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 163/551 (29%), Positives = 278/551 (50%), Gaps = 64/551 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +VL +L +  ++L      +Q+HC    SG   + FV  +L   Y +   + DA K+
Sbjct: 114 PDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKV 173

Query: 61  FVEIPQ-----------------------------------PSVVSWNSLISGYVQSGKY 85
           F  + +                                   P++VSWN ++SG+ +SG +
Sbjct: 174 FDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYH 233

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
           ++A+ +F ++       D  + +S L + G   +L +G  IH  ++K  L +   + + +
Sbjct: 234 KEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAM 293

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYN 205
           +DMYGK G V   I +F E    +    N+ I   +RNG ++ A                
Sbjct: 294 LDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKA---------------- 337

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
                +  FG  ++  M L      N  SW SI+ G     +  EAL LF EMQ   V  
Sbjct: 338 -----LEMFGLFKEQKMEL------NVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKP 386

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           +  T  +ML     ++AL  G   H   ++  L   + V SAL+DMY+KCG+++++  +F
Sbjct: 387 NRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVF 446

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
             +  KNLV WN+++ GY+ +G   +V+ +FE L   R L+PD ++F ++L+AC    + 
Sbjct: 447 NMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTR-LKPDFISFTSLLSACGQVGLT 505

Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
            D+  +YF  M+++YGIKP +EH   M+ L+G+ G++  A  +I+E+ F     VW ALL
Sbjct: 506 -DEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALL 564

Query: 446 SASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505
           ++    +++D+A I+A ++  LE ++   YV++ N+Y + G W     +RN M   GL+K
Sbjct: 565 NSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKK 624

Query: 506 EAGCSWIEVEN 516
             GCSWI+V+N
Sbjct: 625 NPGCSWIQVKN 635



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 128/497 (25%), Positives = 214/497 (43%), Gaps = 67/497 (13%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q H  ILKSG  ++ ++S  L+  Y   N   DA  +   IP P+V S++SLI    ++ 
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
            + +++ +F  +    +  D +   +    C +L + + G  IH       L+    +  
Sbjct: 96  LFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQG 155

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----P 199
            L  MY +CG + DA  VF  M +KD+++ ++++   AR G LE     L  +      P
Sbjct: 156 SLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEP 215

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           + +S+N +++G                    N S ++             EA+ +F +M 
Sbjct: 216 NIVSWNGILSGF-------------------NRSGYHK------------EAVIMFQKMH 244

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
                 D+ T S++L  +     L  G  IH  VIKQGL     V SA+LDMY K G V 
Sbjct: 245 HLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVY 304

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
               +F           NA ITG +RNG + K +E+F   K  + ++ + V++ +++A C
Sbjct: 305 GIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKE-QKMELNVVSWTSIIAGC 363

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG--SY 437
           +      + + E F  M +  G+KP      SM+   G           I  LG G  ++
Sbjct: 364 AQNGKDIEAL-ELFREM-QVAGVKPNRVTIPSMLPACGN----------IAALGHGRSTH 411

Query: 438 GVVWR-----------ALLSASGACSDLDVARISAAEVIKLEGDSDYV-YVMLCNLYTSH 485
           G   R           AL+     C  + +++I    V  +    + V +  L N Y+ H
Sbjct: 412 GFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQI----VFNMMPTKNLVCWNSLMNGYSMH 467

Query: 486 GNW-DVASVMRNFMRER 501
           G   +V S+  + MR R
Sbjct: 468 GKAKEVMSIFESLMRTR 484


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 156/553 (28%), Positives = 293/553 (52%), Gaps = 39/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y +  ++ A  + G      Q+H  ++K GF   + V  +L+  Y ++  L DA  +
Sbjct: 192 PNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDV 251

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++     V+WNS+I+GYV++G+  +   +F +++ + +     +F S + +C  L  L
Sbjct: 252 FDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLREL 311

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIAA 179
            L   +  K +K       ++   L+    KC  ++DA+ +F  M + K+++SW ++I+ 
Sbjct: 312 ALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISG 371

Query: 180 SARNGNLELAFGFLHRL------PNPDTIS--------------YNEVI----------- 208
             +NG  + A     ++      PN  T S              + EVI           
Sbjct: 372 CLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVG 431

Query: 209 ----NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
               +   + G+  DA+ +   + + +  +W+++L GY       EA  LF ++  + + 
Sbjct: 432 TALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIK 491

Query: 265 MDEYTFSTMLSGIAG-LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
            +E+TFS++++  A   +A   G   H+  IK  L+ ++ V+SAL+ MY+K G ++ A  
Sbjct: 492 PNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHE 551

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F+    ++LV+WN+MI+GY+++G   K +E+F++++  R++  D+VTF+ V+ AC+H  
Sbjct: 552 VFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQK-RNMDVDAVTFIGVITACTHAG 610

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
           +  +K  +YF SM  D+ I PT++H   MI L  + G + +A  +I E+ F     VWR 
Sbjct: 611 L-VEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRT 669

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           LL A+    ++++  ++A ++I L+ +    YV+L N+Y + GNW   + +R  M +R +
Sbjct: 670 LLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKV 729

Query: 504 RKEAGCSWIEVEN 516
           +KE G SWIEV+N
Sbjct: 730 KKEPGYSWIEVKN 742



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 201/398 (50%), Gaps = 45/398 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+HC  +K G + +V V T+L+  Y K  ++ D  ++F E+ + +VVSW SL++GY  +
Sbjct: 113 RQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWN 172

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G Y     LF +++   +  + Y+ ++ +AA    G + +G+ +H+ +VK+  E  + + 
Sbjct: 173 GLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVF 232

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
           N LI +Y + G + DA  VF +M  +D ++WNS+IA   RNG     F   +++      
Sbjct: 233 NSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVK 292

Query: 199 PDTISYNEVINGIAQF-----------------------------------GDIEDAIMI 223
           P  +++  VI   A                                      +++DA+ +
Sbjct: 293 PTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSL 352

Query: 224 LSSMPS-PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
            S M    N  SW ++++G +      +A++LF +M+ + V  + +T+S +L+    +  
Sbjct: 353 FSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT----VHY 408

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
             +   +H+ VIK   + S  V +ALLD Y K G    A  +F  +  K+L+ W+AM+ G
Sbjct: 409 PVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAG 468

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           YA+ G+  +  +LF QL     ++P+  TF +V+ AC+
Sbjct: 469 YAQTGETEEAAKLFHQL-IKEGIKPNEFTFSSVINACA 505



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 173/365 (47%), Gaps = 47/365 (12%)

Query: 57  AHKMFVEIP-QPSVVS-WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC 114
           AH +F +IP +P+ +   N L+  Y +  + ++ALNLFV L  S +  D  + +     C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 115 GQLGSL--QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS 172
              GSL  +LG  +H + VK+ L   V +   L+DMY K  +V D   VF EM +++++S
Sbjct: 104 A--GSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVS 161

Query: 173 WNSVIAASARNG------NLELAFGFLHRLPNPDTIS----------------------- 203
           W S++A  + NG       L     +   LPN  T+S                       
Sbjct: 162 WTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVV 221

Query: 204 ----------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
                     +N +I+  ++ G + DA  +   M   +  +WNS++ GYV   +  E   
Sbjct: 222 KHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFE 281

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
           +F +MQ   V     TF++++   A L  L    L+    +K G     +V +AL+   S
Sbjct: 282 IFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALS 341

Query: 314 KCGQVEIADSMFRSLCR-KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
           KC +++ A S+F  +   KN+V+W AMI+G  +NG   + + LF Q++    ++P+  T+
Sbjct: 342 KCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRR-EGVKPNHFTY 400

Query: 373 LNVLA 377
             +L 
Sbjct: 401 SAILT 405


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 173/556 (31%), Positives = 278/556 (50%), Gaps = 41/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL A + LG      QLH Y+ K+G  S+  +  +L+  Y K   +  A  +
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    + +VV WN ++  + Q     K+  LF +++ + I  + +++   L  C     +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IHS  VK   E  + ++  LIDMY K G +E A  V   + +KD++SW S+IA  
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILS----SMPSPNS 232
            ++   + A      +      PD I     I+G A    +   + I +    S  S + 
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDV 481

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKD------------------------VPMDE- 267
           S WN+++  Y    R+ EA   F EM+ KD                        + MD+ 
Sbjct: 482 SIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQS 541

Query: 268 ------YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
                 +TF + LS  A L+ +  G  IH+ VIK G      V +AL+ +Y KCG  E A
Sbjct: 542 GVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDA 601

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F  +  +N V+WN +IT  +++G   + ++LF+Q+K    ++P+ VTF+ VLAACSH
Sbjct: 602 KMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKK-EGIKPNDVTFIGVLAACSH 660

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  + +S YF+SM+ +YGI+P  +H   +I + G+ G++ RA++ I E+   +  +VW
Sbjct: 661 VGLVEEGLS-YFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVW 719

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LLSA     +++V   +A  +++LE      YV+L N Y     W     +R  MR+R
Sbjct: 720 RTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDR 779

Query: 502 GLRKEAGCSWIEVENV 517
           G+RKE G SWIEV+NV
Sbjct: 780 GVRKEPGRSWIEVKNV 795



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 206/417 (49%), Gaps = 40/417 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  YVL  +L + +        + +H    K GF S +FV  A++  Y +  S   A ++
Sbjct: 141 PTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERV 200

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P    V++N+LISG+ Q G    AL +F E++ S +  D  + +S LAAC  LG L
Sbjct: 201 FCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDL 260

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           Q G  +HS + K  +    ++   L+D+Y KCG VE A+ +F      +++ WN ++ A 
Sbjct: 261 QKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAF 320

Query: 181 ARNGNLELAFGFLHRL------PNPDT-------------ISYNEVINGI---------- 211
            +  +L  +F    ++      PN  T             I   E I+ +          
Sbjct: 321 GQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDM 380

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     +++G +E A  +L  +   +  SW S++ GYV      +AL  F EMQ  
Sbjct: 381 YVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKC 440

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D    ++ +SG AG++A+  G+ IH+ +   G    + + +AL+++Y++CG++  A
Sbjct: 441 GIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREA 500

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            S F  +  K+ +T N +++G+A++G   + +++F ++     ++ +  TF++ L+A
Sbjct: 501 FSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQ-SGVKHNVFTFVSALSA 556



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 185/396 (46%), Gaps = 40/396 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           ++H   +  G      V   L+  Y K   +  A ++F E+     VSW +++SGY Q+G
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
              +AL L+ ++ R+ +    Y  +S L++C +      G  IH++  K+     + + N
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGN 182

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NP 199
            +I +Y +CGS   A  VF +M  +D +++N++I+  A+ G+ E A      +     +P
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSP 242

Query: 200 DTISYNEVINGIAQF-----------------------------------GDIEDAIMIL 224
           D ++ + ++   A                                     GD+E A++I 
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIF 302

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
           +S    N   WN +L  +   N + ++  LF +MQ+  +  +++T+  +L        + 
Sbjct: 303 NSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREID 362

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  IHS  +K G ++ + V+  L+DMYSK G +E A  +   L  K++V+W +MI GY 
Sbjct: 363 LGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYV 422

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           ++      +  F++++    + PD++   + ++ C+
Sbjct: 423 QHECCKDALAAFKEMQKC-GIWPDNIGLASAISGCA 457



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 111/402 (27%), Positives = 184/402 (45%), Gaps = 43/402 (10%)

Query: 71  SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC-GQLGSLQLGMAIHSK 129
           S    ++G++      K L+LF +  R         F  AL AC G     Q+   IH+K
Sbjct: 8   SLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVPEIHAK 67

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
            V   L +  ++ N LID+Y K G V  A  VF E+  +D +SW ++++  A+NG  E A
Sbjct: 68  AVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEA 127

Query: 190 FGF---LHR---LPNPDTISY---------------------------------NEVING 210
            G    +HR   +P P  +S                                  N VI  
Sbjct: 128 LGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITL 187

Query: 211 IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
             + G    A  +   MP  ++ ++N++++G+        AL +F EMQ   +  D  T 
Sbjct: 188 YLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTI 247

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
           S++L+  A L  L  G  +HS + K G+ +  ++  +LLD+Y KCG VE A  +F S  R
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDR 307

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
            N+V WN M+  + +  DL K  ELF Q++    ++P+  T+  +L  C+ T    D + 
Sbjct: 308 TNVVLWNLMLVAFGQINDLAKSFELFCQMQAA-GIRPNQFTYPCILRTCTCTR-EID-LG 364

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
           E   S++   G +  +     +I +  + G + +A+R++  L
Sbjct: 365 EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEML 406


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 145/494 (29%), Positives = 264/494 (53%), Gaps = 34/494 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + ++C + K GF   + V   L+ FY +   L +A ++F E     VV+W ++I GY   
Sbjct: 277 ESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAH 336

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
               +A+ +F  +  S +  +  +  + ++AC  +G+L++G  +H K+ + ++   + + 
Sbjct: 337 DCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLH 396

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
           N L+DMY KC  + DA  +F  M  KD+ SW S++                         
Sbjct: 397 NALLDMYVKCDCLVDARELFDRMATKDVYSWTSMV------------------------- 431

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                 NG A+ GD+E A       P  N+  W++++ GY   N+  E+L LF EM  + 
Sbjct: 432 ------NGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERG 485

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHS-CVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           V   E+T  ++LS    L+ L  G  IH   V+ + +  S+ + +A++DMY+KCG ++ A
Sbjct: 486 VVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAA 545

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F ++  +NL++WN MI GYA NG   + I +F+Q++ +   +P+++TF+++L ACSH
Sbjct: 546 TEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNM-GFEPNNITFVSLLTACSH 604

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +   +  EYF++M + YGIKP   H   M+ L+G+ G +  A ++I  +        W
Sbjct: 605 GGL-ISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAW 663

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL+A     ++++AR+SA  +++L+ +   +YV+L N   +   W     +R+ M+++
Sbjct: 664 GALLNACRMHGNVELARLSAHNLLRLDPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDK 723

Query: 502 GLRKEAGCSWIEVE 515
           G++K  G S IE++
Sbjct: 724 GVKKIPGYSLIEID 737



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 121/256 (47%), Gaps = 36/256 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  L  ++ A SD+G     +++H  + +     ++ +  AL+  Y K + L DA ++
Sbjct: 356 PNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDAREL 415

Query: 61  FVEIPQPSVVSWNSLISGYVQSG-------------------------------KYRKAL 89
           F  +    V SW S+++GY + G                               K +++L
Sbjct: 416 FDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESL 475

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK-IVKYSLERGVVIANCLIDM 148
            LF E+    +    ++  S L+ACGQL  L LG  IH   +V   +   V + N ++DM
Sbjct: 476 KLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDM 535

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISY 204
           Y KCGS++ A  VF  M ++++ISWN++IA  A NG  + A     ++ N    P+ I++
Sbjct: 536 YAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITF 595

Query: 205 NEVINGIAQFGDIEDA 220
             ++   +  G I + 
Sbjct: 596 VSLLTACSHGGLISEG 611


>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Vitis vinifera]
          Length = 545

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 158/499 (31%), Positives = 262/499 (52%), Gaps = 10/499 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + LH +++  G     + +  LM FY +   L++A K+F +IP  ++  W  L     + 
Sbjct: 47  RALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARR 106

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G Y +AL+ F E+++  +  + +   S L ACG L   + G  +H+ I+K S E    I 
Sbjct: 107 GFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYII 166

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
           + LI MY KCG VE A  VF  ++DKD++  N++++  A++G +  A   + ++      
Sbjct: 167 SALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVK 226

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPS----PNSSSWNSILTGYVNRNRVPEALHL 254
           P+ +S+N +I G +Q GD      +   M +    P+  SW S+++G+V      E    
Sbjct: 227 PNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDA 286

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F EM  +       T S++L     ++ L  G  IH   +  G++  + V SAL+DMY+K
Sbjct: 287 FKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAK 346

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG +  A  +F  +  +N VTWN++I GYA +G   + IELF Q++   D + D +TF  
Sbjct: 347 CGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEE-SDTKLDHLTFTA 405

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           VL ACSH  +  +     F  M + Y I+P +EH   M+ L+G+ G++  A  +I+ +  
Sbjct: 406 VLNACSHAGM-VELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPV 464

Query: 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494
                VW ALL A     ++++A ++A  + +LE +S    ++L NLY   G W  A+ M
Sbjct: 465 EPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYADAGRWGNAAKM 524

Query: 495 RNFMRERGLRKEAGCSWIE 513
           +  M++R   K  GCSWIE
Sbjct: 525 KKMMKQRKFGKFPGCSWIE 543



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 181/404 (44%), Gaps = 53/404 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++VL  +L+A   L      + +H  ILK+ F S+ ++ +AL+  Y K   +  A ++
Sbjct: 126 PNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRV 185

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I    +V  N+++SGY Q G   +ALNL  +++++ +  +  S+ + +A   Q+G  
Sbjct: 186 FDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDK 245

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI----ISWNSV 176
            +   +   +    +E  VV    +I  + +     +    F EM+D+      ++ +S+
Sbjct: 246 SMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSL 305

Query: 177 IAASARNGNLELA---FGFLHRLP-NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           + A     NL       G+   +    D    + +++  A+ G I +A ++   MP  N+
Sbjct: 306 LPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNT 365

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
            +WNS++ GY N     EA+ LF +M+  D  +D  TF                      
Sbjct: 366 VTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTF---------------------- 403

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK-----NLVTWNAMITGYARNG 347
                        +A+L+  S  G VE+ +S+FR +  K      L  +  M+    R G
Sbjct: 404 -------------TAVLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAG 450

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC-SHTDIPFDKVS 390
            L++  +L + +     ++PD   +  +L AC +H +I   +V+
Sbjct: 451 KLSEAYDLIKAMP----VEPDKFVWGALLGACRNHGNIELAEVA 490



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 1/113 (0%)

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           T++  +   A   AL  G  +H+ ++  GL      A+ L+  Y++CGQ+  A  +F  +
Sbjct: 29  TYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKI 88

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              N+  W  +    AR G   + +  F +++    L+P+     ++L AC H
Sbjct: 89  PNTNIRRWIVLTGACARRGFYEEALSAFSEMQK-EGLRPNQFVLPSILKACGH 140


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/475 (31%), Positives = 249/475 (52%), Gaps = 32/475 (6%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           TA++  Y +   L +A ++F E+P+ + +SW+++I+ Y QSG   +AL LF ++ +    
Sbjct: 254 TAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFK 313

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            +   F   L+A   L +L  G+ IH  + K  +++ V I + LID+Y KCG  +D   V
Sbjct: 314 PNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLV 373

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F  +++K+++ WNS++   + NG LE                                  
Sbjct: 374 FDLILEKNVVCWNSMVGGYSINGRLEET-------------------------------E 402

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   +P  N  SW +I+ GY+   +  + L +F  +       ++ TFS++L   A ++
Sbjct: 403 ELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIA 462

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           +L  GM +H  +IK G+   I V +AL DMY+KCG +  +  +F  +  KN ++W  MI 
Sbjct: 463 SLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQ 522

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G A +G   + + LFE+++   ++ P+ +  L+VL ACSH  +  DK   YF SM K YG
Sbjct: 523 GLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGL-VDKGLWYFNSMEKVYG 581

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           IKP  +H   ++ L+ + G ++ A+  IR + F      W ALLS      D  +A  +A
Sbjct: 582 IKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTA 641

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++ +L  ++   YV+L N+Y S G W   S +R  MRE+GL+K  GCSW+EV N
Sbjct: 642 KKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRN 696



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 170/370 (45%), Gaps = 63/370 (17%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           +AL+    K   + ++   F   P  +VVSW + ISG+V++G   +AL LF  L  S + 
Sbjct: 122 SALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVR 181

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            +  +FTS + ACG+LG   LGM+I   +VK   E  + ++N LI +             
Sbjct: 182 PNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITL------------- 228

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
                             S R G ++LA     R+   D +S+  +++   + GD+ +A 
Sbjct: 229 ------------------SLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREAR 270

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            I   MP  N  SW++++  Y       EAL LF +M  +    +   F+  LS +A L 
Sbjct: 271 RIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLR 330

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL+ G+ IH  V K G+D  + + S+L+D+Y KCG+ +    +F  +  KN+V WN+M+ 
Sbjct: 331 ALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVG 390

Query: 342 GYARNG-------------------------------DLTKVIELFEQLKTVRDLQPDSV 370
           GY+ NG                                  KV+E+F  L  V    P+  
Sbjct: 391 GYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTL-LVSGQTPNKS 449

Query: 371 TFLNVLAACS 380
           TF +VL AC+
Sbjct: 450 TFSSVLCACA 459



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 130/263 (49%)

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           +    A A +  S L      G +  G  +H+ ++K        IA  L+ +Y  C    
Sbjct: 14  KKSFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFA 73

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           +   +  E    D++  N +I+A  + GNL  A      +P  + +S++ +I+G+ ++G 
Sbjct: 74  EIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGR 133

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           +E+++      P  N  SW + ++G+V      EAL LF  +    V  ++ TF++++  
Sbjct: 134 VEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRA 193

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
              L     GM I   V+K G +  + V+++L+ +  + G++++A  +F  + ++++V+W
Sbjct: 194 CGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSW 253

Query: 337 NAMITGYARNGDLTKVIELFEQL 359
            A++  Y   GDL +   +F+++
Sbjct: 254 TAILDAYVETGDLREARRIFDEM 276


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 164/535 (30%), Positives = 278/535 (51%), Gaps = 51/535 (9%)

Query: 25   LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
            LH  I KSG  SNV V  +L+  Y +  S  DA  +F  +P   ++SWNS+++ +V+ GK
Sbjct: 474  LHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGK 533

Query: 85   YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
            Y  A+ L VE+ ++    +  +FT+AL+AC  L  L++   +H+ ++ +++   ++I N 
Sbjct: 534  YSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEKLKI---VHAFVIHFAVHHNLIIGNT 590

Query: 145  LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG---------NLELAFGFL-- 193
            L+ MYGK G +++A  V   M ++D+++WN++I   A +          NL    G L  
Sbjct: 591  LVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSN 650

Query: 194  -------------------HRLP----------NPDTISYNEVINGIAQFGDIEDAIMIL 224
                               H +P            DT   + +I   AQ GD+  +  I 
Sbjct: 651  YITIVNLLGTCMSPDYLLKHGMPIHAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIF 710

Query: 225  SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
              + + NSS+WN+I +   +     EAL     M++  V +D+++FS  L+ I  L+ L 
Sbjct: 711  DVLANKNSSTWNAIFSANAHYGPGEEALKFIARMRNDGVDLDQFSFSVALATIGNLTVLD 770

Query: 285  WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT---WNAMIT 341
             G  +HS +IK G +    V +A +DMY KCG++   D +FR L    + +   WN +I+
Sbjct: 771  EGQQLHSWIIKLGFELDEYVLNATMDMYGKCGEI---DDVFRILPIPKIRSKRSWNILIS 827

Query: 342  GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
              AR+G   +  E F ++  +  L+PD VTF+++L+ACSH  +  D+   YF SMT ++G
Sbjct: 828  ALARHGFFRQATEAFHEMLDL-GLKPDHVTFVSLLSACSHGGL-VDEGLVYFSSMTSEFG 885

Query: 402  IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
            +   +EHC  +I L+G+ G +  A+  I ++       VWR+LL+A     +L++ R +A
Sbjct: 886  VPTAIEHCVCIIDLLGRSGRLAEAEGFIDKMPVPPNEFVWRSLLAACKVHGNLELGRKAA 945

Query: 462  AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
              + +L    D  YV+  N+  S   W     +R  M  + L+K+  CSWI+++N
Sbjct: 946  DRLFELNSSDDSAYVLYSNVCASTQRWGDVENVRKQMESQSLKKKPACSWIKLKN 1000



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 130/519 (25%), Positives = 235/519 (45%), Gaps = 52/519 (10%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N  V   L +  S++      + LH   +K     N F +  L+  Y K  S+  A  +F
Sbjct: 146 NPQVSRFLQKGFSEISEGNVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVF 205

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            ++   +  SWN++ISG+V+ G Y KA+  F  +  + +   +Y   S + AC + G + 
Sbjct: 206 DKMYDRNDASWNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMT 265

Query: 122 LGM-AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            G   IH  +VK  L   V +   L+  YG  GSV +A  +F E+ + +I+SW S++   
Sbjct: 266 EGARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCY 325

Query: 181 ARNGNLELAFGFLHRLPNPDTI----SYNEVINGIAQFGD-------------------- 216
           A NG+ +        L +   I    +   VI     FGD                    
Sbjct: 326 ADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSS 385

Query: 217 ----------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                           +E+A  + ++M   ++ SWNSI+T   +  R  E+L  F  M+ 
Sbjct: 386 VSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRR 445

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
                D  T S +L        L WG  +H  + K GL++++ V ++LL MY++ G  E 
Sbjct: 446 THPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSED 505

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVLAAC 379
           A+ +F ++  ++L++WN+M+  +  +G  +  I L  E LKT + +  + VTF   L+AC
Sbjct: 506 AELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAM--NYVTFTTALSAC 563

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
            +     +K+ +   +    + +   +    +++ + G+ G +  AQ++ + +      V
Sbjct: 564 YN----LEKL-KIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDV-V 617

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEG-DSDYVYVM 477
            W AL+       D + A I A  +++ EG  S+Y+ ++
Sbjct: 618 TWNALIGGHADDKDPN-ATIQAFNLMRREGLLSNYITIV 655



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 184/390 (47%), Gaps = 38/390 (9%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGF-LSNVFVSTALMGFYRKINSLADAHKMFVEIPQP 67
           ++R     G  T   Q+   ++KSG   S+V V+ +L+  +   +S+ +A ++F  + + 
Sbjct: 356 VIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQER 415

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
             +SWNS+I+    +G++ ++L  F  + R+    D  + ++ L ACG    L+ G  +H
Sbjct: 416 DTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWGRGLH 475

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG--- 184
             I K  LE  V + N L+ MY + GS EDA  VF  M  +D+ISWNS++A+   +G   
Sbjct: 476 GLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYS 535

Query: 185 --------------------------------NLELAFGF-LHRLPNPDTISYNEVINGI 211
                                            L++   F +H   + + I  N ++   
Sbjct: 536 HAILLLVEMLKTRKAMNYVTFTTALSACYNLEKLKIVHAFVIHFAVHHNLIIGNTLVTMY 595

Query: 212 AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271
            +FG +++A  +   MP  +  +WN+++ G+ +       +  F  M+ + +  +  T  
Sbjct: 596 GKFGLMDEAQKVCKIMPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIV 655

Query: 272 TML-SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
            +L + ++    L  GM IH+ ++  G +    V S+L+ MY++CG +  +  +F  L  
Sbjct: 656 NLLGTCMSPDYLLKHGMPIHAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLAN 715

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           KN  TWNA+ +  A  G   + ++   +++
Sbjct: 716 KNSSTWNAIFSANAHYGPGEEALKFIARMR 745



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 16/252 (6%)

Query: 23   QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ-PSVVSWNSLISGYVQ 81
            QQLH +I+K GF  + +V  A M  Y K   + D  ++ + IP+  S  SWN LIS   +
Sbjct: 773  QQLHSWIIKLGFELDEYVLNATMDMYGKCGEIDDVFRI-LPIPKIRSKRSWNILISALAR 831

Query: 82   SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIV-KYSLERGVV 140
             G +R+A   F E+    +  D  +F S L+AC   G +  G+   S +  ++ +   + 
Sbjct: 832  HGFFRQATEAFHEMLDLGLKPDHVTFVSLLSACSHGGLVDEGLVYFSSMTSEFGVPTAIE 891

Query: 141  IANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
               C+ID+ G+ G + +A G   +M +  +   W S++AA   +GNLEL      RL   
Sbjct: 892  HCVCIIDLLGRSGRLAEAEGFIDKMPVPPNEFVWRSLLAACKVHGNLELGRKAADRLFEL 951

Query: 200  DT------ISYNEVINGIAQFGDIEDA--IMILSSMPSPNSSSW----NSILTGYVNRNR 247
            ++      + Y+ V     ++GD+E+    M   S+    + SW    N ++T  +    
Sbjct: 952  NSSDDSAYVLYSNVCASTQRWGDVENVRKQMESQSLKKKPACSWIKLKNKVMTFGMGDQF 1011

Query: 248  VPEALHLFGEMQ 259
             P++  ++ +++
Sbjct: 1012 HPQSAQIYAKLE 1023


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 158/557 (28%), Positives = 289/557 (51%), Gaps = 47/557 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL-SNVFVSTALMGFYRKINSLADAHK 59
           P+ +    L+RA+          QLH   L+ G L  NVF S +L+  Y +   +A+A++
Sbjct: 67  PDSFTFPPLVRAAPG---PASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYR 123

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F E+P+  V +WN+++SG  ++ +   A+ L   +    +  DA + +S L  C  LG 
Sbjct: 124 VFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGD 183

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
             L + +H   VK+ L   + + N LID+YGK G + +A  VFG M  +D+++WNS+I+A
Sbjct: 184 RALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISA 243

Query: 180 SARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGD------------------- 216
           + + G +  A    H +      PD ++   + + +AQ GD                   
Sbjct: 244 NEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVG 303

Query: 217 -----------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                            I+ A  +  ++P  +  SWN+++TGY+      EA+ ++ +M 
Sbjct: 304 DIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMH 363

Query: 260 SKD-VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           + + +   + TF ++L   + L  L  GM +H+  IK GL+  + V + L+D+Y+KCG++
Sbjct: 364 NHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKL 423

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
             A  +F  + R++   WNA+I G   +G   K + LF Q++   +++PD VTF+++LAA
Sbjct: 424 VEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQ-EEIKPDHVTFVSLLAA 482

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH  +  D+   +F+ M   YGI P  +H   M+ ++G+ G++  A   I+ +      
Sbjct: 483 CSHAGL-VDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDS 541

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
            VW ALL A     ++++ ++++  + +L+ ++   YV++ N+Y   G WD    +R+ +
Sbjct: 542 AVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLV 601

Query: 499 RERGLRKEAGCSWIEVE 515
           R + L+K  G S +EV+
Sbjct: 602 RRQNLQKTPGWSSMEVK 618


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 163/549 (29%), Positives = 282/549 (51%), Gaps = 47/549 (8%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFL-SNVFVSTALMGFYRKINSLADAHKMFVEIPQP 67
           LLRA+   G      QLH   L+ G L  + F S AL+  Y +   + DA++ F E+   
Sbjct: 77  LLRAAQGPG---TAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHR 133

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
            V +WN+++SG  ++ +  +A+ LF  +    +  DA + +S L  C  LG   L +A+H
Sbjct: 134 DVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMH 193

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNL- 186
              VK+ L+  + + N +ID+YGK G +E+   VF  M  +D+++WNS+I+   + G + 
Sbjct: 194 LYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVA 253

Query: 187 ---ELAFGFLHRLPNPDTISYNEVINGIAQFGDI-------------------------- 217
              E+  G      +PD ++   + + IAQ GDI                          
Sbjct: 254 SAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAI 313

Query: 218 ----------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD-VPMD 266
                     E A  +  SMP  ++ SWN+++TGY+      EA+H++  MQ  + +   
Sbjct: 314 VDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPI 373

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
           + TF ++L   + L AL  G  +H+  IK GL+  + V + ++D+Y+KCG+++ A  +F 
Sbjct: 374 QGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFE 433

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
              R++   WNA+I+G   +G   K + LF Q++    + PD VTF+++LAACSH  +  
Sbjct: 434 QTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQ-EGISPDHVTFVSLLAACSHAGL-V 491

Query: 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
           D+   +F  M   YGIKP  +H   M+ + G+ G++  A   IR +       +W ALL 
Sbjct: 492 DQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLG 551

Query: 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506
           A     ++++ ++++  + +L+  +   YV++ N+Y   G WD    +R+ +R + L+K 
Sbjct: 552 ACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKT 611

Query: 507 AGCSWIEVE 515
            G S IEV+
Sbjct: 612 PGWSSIEVK 620



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P +     +L A S LG      ++H   +K+G   +V+V T ++  Y K   L +A  +
Sbjct: 372 PIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLL 431

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F + P+ S   WN++ISG    G   KAL+LF ++++  I  D  +F S LAAC   G +
Sbjct: 432 FEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLV 491

Query: 121 QLGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G    + +   Y ++       C++DM+G+ G ++DA      M I  D   W +++ 
Sbjct: 492 DQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLG 551

Query: 179 ASARNGNLELA 189
           A   +GN+E+ 
Sbjct: 552 ACRIHGNVEMG 562



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 5/115 (4%)

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS-ALLDMYSKCGQVEIADSM 324
           D +TF  +L    G         +H+C ++ GL      AS AL+  Y + G+V  A   
Sbjct: 70  DAFTFPPLLRAAQGPGTAAQ---LHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRA 126

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           F  +  +++  WNAM++G  RN    + + LF ++  +  +  D+VT  +VL  C
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRM-VMEGVAGDAVTVSSVLPMC 180


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 155/518 (29%), Positives = 271/518 (52%), Gaps = 34/518 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++    L +A+S L        LH  ++K+   S++F+  +L+ FY    +   AH++
Sbjct: 171 PNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRV 230

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P   VVSWN++I+ +   G   KAL LF E+E  ++  +  +  S L+AC +   L
Sbjct: 231 FTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDL 290

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  I S I        +++ N ++DMY KCG + DA  +F +M +KDI+SW +++   
Sbjct: 291 EFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTML--- 347

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                                       +G A+ G+ ++A  I  +MP   +++WN++++
Sbjct: 348 ----------------------------DGHAKLGNYDEAHCIFDAMPHKWTAAWNALIS 379

Query: 241 GYVNRNRVPEALHLFGEMQ-SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            Y    +   AL LF EMQ SKD   DE T    L   A L A+ +G  IH  + K  ++
Sbjct: 380 AYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDIN 439

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            +  +A++LLDMY+KCG +  A  +F ++ RK++  W+AMI   A  G     ++LF  +
Sbjct: 440 LNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSM 499

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
                ++P++VTF N+L AC+H  +  ++  + FE M   YGI P ++H   ++ + G+ 
Sbjct: 500 LEAY-IKPNAVTFTNILCACNHAGL-VNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRA 557

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G + +A   I ++       VW ALL A     ++++A ++   +++LE  +   +V+L 
Sbjct: 558 GLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLS 617

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           N+Y   G+W+  S +R  MR+  ++KE  CS I+V  +
Sbjct: 618 NIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGI 655



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 5/161 (3%)

Query: 289 IHSCVIKQGLDASIVVASALLDMY--SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
           IH+ +++         AS LL  Y  S C  +  A ++F  + + NL  WN +I GYA +
Sbjct: 91  IHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASS 150

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
            D T+   +F  +       P+  TF  +  A S   +    +      M     +   +
Sbjct: 151 SDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVL--HLGSVLHGMVIKASLSSDL 208

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
               S+I   G  G    A R+   +  G   V W A+++A
Sbjct: 209 FILNSLINFYGSSGAPDLAHRVFTNMP-GKDVVSWNAMINA 248


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 160/542 (29%), Positives = 287/542 (52%), Gaps = 44/542 (8%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H  + +S    +VFV+TAL+  Y K  SL DA K+F  +P  SV +WNS+IS Y  S +
Sbjct: 32  IHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISER 91

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
             +A  +F  ++      D  +F S L AC    +LQ G  +   I + S E  + +   
Sbjct: 92  SGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTA 151

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PD 200
           LI MY +C S E+A  VFG M  K++I+W+++I A A +G+   A  +   +      P+
Sbjct: 152 LITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPN 211

Query: 201 TISYNEVINGIA-------------------------------------QFGDIEDAIMI 223
            +++  ++NG                                       + G+++ A +I
Sbjct: 212 RVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVI 271

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
           L  M     ++WN ++ GY    R  EAL  +  +Q + +P+D+ TF ++L+     ++L
Sbjct: 272 LQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSL 331

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G +IHS  ++ GLD+ ++V +AL +MYSKCG +E A  +F S+  ++ V+WN M+  Y
Sbjct: 332 AEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAY 391

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A++G+  +V++L  +++    ++ + +TF++VL++CSH  +   +  +YF S+  D GI+
Sbjct: 392 AQHGESEEVLKLIRKMEQ-EGVKLNGITFVSVLSSCSHAGL-IAEGCQYFHSLGHDRGIE 449

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
              EH   ++ L+G+ G++  A++ I ++      V W +LL A     DLD  +++A +
Sbjct: 450 VKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARK 509

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAHSSN 523
           +++L+  +    V+L N+Y+  G+W  A+ +R  M  R ++K  G S I+V+N   H   
Sbjct: 510 LLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKN-KVHEFR 568

Query: 524 IR 525
           +R
Sbjct: 569 VR 570



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 189/419 (45%), Gaps = 57/419 (13%)

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159
           + A+  +F + L +     +L+ G  IHS + +      V +   L++ Y KCGS+ DA 
Sbjct: 6   VKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDAR 65

Query: 160 GVFGEMIDKDIISWNSVIAA---SARNGNLELAFGFLHRLP------------------- 197
            VF  M  + + +WNS+I+A   S R+G    AF    R+                    
Sbjct: 66  KVFDGMPCRSVGTWNSMISAYSISERSGE---AFFIFQRMQHEGERCDRVTFLSILDACV 122

Query: 198 NPDTISYNE--------------------VINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
           NP+ + + +                    +I   A+    E+A  +   M   N  +W++
Sbjct: 123 NPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSA 182

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           I+T + +     EAL  F  MQ + +  +  TF ++L+G    S L     IH  + + G
Sbjct: 183 IITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHG 242

Query: 298 LDASIVVASALLDMYSKC--GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
           LD +  +++AL+++Y +C  G++++A+ + + +  + +  WN +I GY  +G   + +E 
Sbjct: 243 LDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALET 302

Query: 356 FEQLKTVRDLQPDSVTFLNVLAAC-SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
           +++L+ +  +  D VTF++VL AC S T +   K+     S   + G+   V    ++  
Sbjct: 303 YQRLQ-LEAIPVDKVTFISVLNACTSSTSLAEGKM---IHSNAVECGLDSDVIVKNALTN 358

Query: 415 LMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD----LDVARISAAEVIKLEG 469
           +  + G +  A+R+   +   S  V W  +L A     +    L + R    E +KL G
Sbjct: 359 MYSKCGSMENARRIFDSMPIRS-AVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNG 416



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 139/317 (43%), Gaps = 19/317 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINS--LADAH 58
           PN      LL   +         ++H  I + G      +S AL+  Y +  +  L  A 
Sbjct: 210 PNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAE 269

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
            +  E+ +  + +WN LI+GY   G+ R+AL  +  L+   I  D  +F S L AC    
Sbjct: 270 VILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSST 329

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           SL  G  IHS  V+  L+  V++ N L +MY KCGS+E+A  +F  M  +  +SWN ++ 
Sbjct: 330 SLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQ 389

Query: 179 ASARNGNLELAFGFLHRLPNP----DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSS 234
           A A++G  E     + ++       + I++  V++  +  G I +      S+       
Sbjct: 390 AYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIE 449

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
             +   G      + + L   G++Q       E   S M S       +TW  L+ +C +
Sbjct: 450 VKTEHYGC-----LVDLLGRAGKLQEA-----EKYISKMPSEP---EIVTWASLLGACRV 496

Query: 295 KQGLDASIVVASALLDM 311
            + LD   + A  LL++
Sbjct: 497 HKDLDRGKLAARKLLEL 513



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 134/330 (40%), Gaps = 51/330 (15%)

Query: 159 IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIE 218
           + V   ++D D +     I +  R     L           D      ++N   + G + 
Sbjct: 14  LNVLNSVVDPDALRKGKFIHSCVRESEHSL-----------DVFVNTALVNTYTKCGSLT 62

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
           DA  +   MP  +  +WNS+++ Y    R  EA  +F  MQ +    D  TF ++L    
Sbjct: 63  DARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACV 122

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
               L  G  +   + +   +  + V +AL+ MY++C   E A  +F  + +KNL+TW+A
Sbjct: 123 NPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSA 182

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           +IT +A +G   + +  F  ++    + P+ VTF+++L                    T 
Sbjct: 183 IITAFADHGHCGEALRYFRMMQQ-EGILPNRVTFISLL-----------------NGFTT 224

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
             G++                 E+ R   +I E G      +  AL++  G C   +   
Sbjct: 225 PSGLE-----------------ELSRIHLLITEHGLDDTTTMSNALVNVYGRC---ETGE 264

Query: 459 ISAAEVIKLEGDSDYV--YVMLCNLYTSHG 486
           +  AEVI  E D   +  + +L N YT HG
Sbjct: 265 LDVAEVILQEMDEQQITAWNVLINGYTLHG 294



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 120/272 (44%), Gaps = 40/272 (14%)

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           TF  +L+ +    AL  G  IHSCV +      + V +AL++ Y+KCG +  A  +F  +
Sbjct: 12  TFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGM 71

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC------SHT 382
             +++ TWN+MI+ Y+ +    +   +F++++   + + D VTFL++L AC       H 
Sbjct: 72  PCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGE-RCDRVTFLSILDACVNPENLQHG 130

Query: 383 DIPFDKVSEY-FE-------SMTKDYGIKPTVEHCCSMIRLMGQK--------------- 419
               + +SE  FE       ++   Y    + E+   +   M QK               
Sbjct: 131 KHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADH 190

Query: 420 ---GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476
              GE  R  RM+++ G     V + +LL+     S L+   +S   ++  E   D    
Sbjct: 191 GHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLE--ELSRIHLLITEHGLDDTTT 248

Query: 477 M---LCNLY--TSHGNWDVASVMRNFMRERGL 503
           M   L N+Y     G  DVA V+   M E+ +
Sbjct: 249 MSNALVNVYGRCETGELDVAEVILQEMDEQQI 280


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 150/475 (31%), Positives = 249/475 (52%), Gaps = 32/475 (6%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           TA++  Y +   L +A ++F E+P+ + +SW+++I+ Y QSG   +AL LF ++ +    
Sbjct: 254 TAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFK 313

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            +   F   L+A   L +L  G+ IH  + K  +++ V I + LID+Y KCG  +D   V
Sbjct: 314 PNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLV 373

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F  +++K+++ WNS++   + NG LE                                  
Sbjct: 374 FDLILEKNVVCWNSMVGGYSINGRLEET-------------------------------E 402

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   +P  N  SW +I+ GY+   +  + L +F  +       ++ TFS++L   A ++
Sbjct: 403 ELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIA 462

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           +L  GM +H  +IK G+   I V +AL DMY+KCG +  +  +F  +  KN ++W  MI 
Sbjct: 463 SLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQ 522

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G A +G   + + LFE+++   ++ P+ +  L+VL ACSH  +  DK   YF SM K YG
Sbjct: 523 GLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGL-VDKGLWYFNSMEKVYG 581

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           IKP  +H   ++ L+ + G ++ A+  IR + F      W ALLS      D  +A  +A
Sbjct: 582 IKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTA 641

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++ +L  ++   YV+L N+Y S G W   S +R  MRE+GL+K  GCSW+EV N
Sbjct: 642 KKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRN 696



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 170/370 (45%), Gaps = 63/370 (17%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           +AL+    K   + ++   F   P  +VVSW + ISG+V++G   +AL LF  L  S + 
Sbjct: 122 SALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVR 181

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            +  +FTS + ACG+LG   LGM+I   +VK   E  + ++N LI +             
Sbjct: 182 PNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITL------------- 228

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
                             S R G ++LA     R+   D +S+  +++   + GD+ +A 
Sbjct: 229 ------------------SLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREAR 270

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            I   MP  N  SW++++  Y       EAL LF +M  +    +   F+  LS +A L 
Sbjct: 271 RIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLR 330

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL+ G+ IH  V K G+D  + + S+L+D+Y KCG+ +    +F  +  KN+V WN+M+ 
Sbjct: 331 ALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVG 390

Query: 342 GYARNG-------------------------------DLTKVIELFEQLKTVRDLQPDSV 370
           GY+ NG                                  KV+E+F  L  V    P+  
Sbjct: 391 GYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTL-LVSGQTPNKS 449

Query: 371 TFLNVLAACS 380
           TF +VL AC+
Sbjct: 450 TFSSVLCACA 459



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 151/310 (48%), Gaps = 7/310 (2%)

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           +    A A +  S L      G +  G  +H+ ++K        IA  L+ +Y  C    
Sbjct: 14  KKSFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFA 73

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           +   +  E    D++  N +I+A  + GNL  A      +P  + +S++ +I+G+ ++G 
Sbjct: 74  EIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGR 133

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           +E+++      P  N  SW + ++G+V      EAL LF  +    V  ++ TF++++  
Sbjct: 134 VEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRA 193

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
              L     GM I   V+K G +  + V+++L+ +  + G++++A  +F  + ++++V+W
Sbjct: 194 CGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSW 253

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
            A++  Y   GDL +   +F+++      + + +++  ++A  S +    ++  + F  M
Sbjct: 254 TAILDAYVETGDLREARRIFDEMP-----ERNEISWSAMIARYSQSGYA-EEALKLFSKM 307

Query: 397 TKDYGIKPTV 406
            ++ G KP +
Sbjct: 308 VQE-GFKPNI 316


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 150/555 (27%), Positives = 281/555 (50%), Gaps = 69/555 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL A + +G     +Q H Y +K+G  S++ V  +L+  Y K + +  AH+ 
Sbjct: 350 PDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEF 409

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F+                Y Q     K+  +F +++   I  + +++ S L  C  LG+ 
Sbjct: 410 FL---------------CYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGAT 454

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IH++++K   +  V +++ LIDMY K G ++ A+ +F  + + D++SW ++IA  
Sbjct: 455 DLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGY 514

Query: 181 ARNGNLELAFGFLHRLPN----PDTISY-------------------------------- 204
            ++     A      + +     D I +                                
Sbjct: 515 TQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDL 574

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +++  A+ G + +A      + + ++ SWNS+++G+       EAL++F +M   
Sbjct: 575 SIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKA 634

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            + ++ +TF + +S  A ++ +  G  IH  + K G D+   V++AL+ +Y+KCG ++  
Sbjct: 635 GLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD- 693

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
                       ++WN+MITGY+++G   + ++LFE +K + D+ P+ VTF+ VL+ACSH
Sbjct: 694 ------------ISWNSMITGYSQHGCGFEALKLFEDMKQL-DVLPNHVTFVGVLSACSH 740

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  + +S YF SM++ + + P  EH   ++ L+G+ G + RA+R + E+      +VW
Sbjct: 741 VGLVDEGIS-YFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVW 799

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LLSA     ++D+   +A+ +++LE      YV++ N+Y   G WD     R  M++R
Sbjct: 800 RTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDR 859

Query: 502 GLRKEAGCSWIEVEN 516
           G++KE G SW+EV+N
Sbjct: 860 GVKKEPGRSWVEVDN 874



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 121/465 (26%), Positives = 227/465 (48%), Gaps = 37/465 (7%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           +L A + + +  + +QLH  +LK GF S  +V  AL+  Y +  +L+ A ++F  + Q  
Sbjct: 257 VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRD 316

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
            VS+NSLISG  Q G   +AL LF ++       D  +  S L+AC  +G+L  G   HS
Sbjct: 317 RVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHS 376

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDA----------------IGVFGEMIDKDII- 171
             +K  +   +V+   L+D+Y KC  ++ A                  +F +M  + I+ 
Sbjct: 377 YAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVP 436

Query: 172 ---SWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGI-----AQFGDIEDAIMI 223
              ++ S++      G  +L    +H         +N  ++ +     A+ G ++ A+ I
Sbjct: 437 NQFTYPSILKTCTTLGATDLGEQ-IHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKI 495

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +   +  SW +++ GY   ++  EAL+LF EMQ + +  D   F++ +S  AG+ AL
Sbjct: 496 FRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQAL 555

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH+     G    + + +AL+ +Y++CG+V  A + F  +  K+ V+WN++++G+
Sbjct: 556 DQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGF 615

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A++G   + + +F Q+     L+ +S TF + ++A +  +I   ++ +    M +  G  
Sbjct: 616 AQSGYFEEALNIFAQMNKA-GLEINSFTFGSAVSAAA--NIANVRIGKQIHGMIRKTGYD 672

Query: 404 PTVEHCCSMIRLMGQKGEV----WRAQRMIRELGFGSYGVVWRAL 444
              E   ++I L  + G +    W +  MI   G+  +G  + AL
Sbjct: 673 SETEVSNALITLYAKCGTIDDISWNS--MI--TGYSQHGCGFEAL 713



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 188/384 (48%), Gaps = 39/384 (10%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           + +Q+H   + SGF S+ F+   L+  Y K   L+ A K+F  +     VSW ++ISG  
Sbjct: 182 FVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLS 241

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           Q+G   +A+ LF ++               L+AC ++   + G  +H  ++K        
Sbjct: 242 QNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVLKQGFSSETY 287

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
           + N L+ +Y + G++  A  +F  M  +D +S+NS+I+  A+ G +  A     ++    
Sbjct: 288 VCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDC 347

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSS----WNSILTGYVNRNRVPEA- 251
             PD ++   +++  A  G + +     S       +S      S+L  YV  + +  A 
Sbjct: 348 QKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAH 407

Query: 252 ---------------LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
                            +F +MQ + +  +++T+ ++L     L A   G  IH+ V+K 
Sbjct: 408 EFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKT 467

Query: 297 GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
           G   ++ V+S L+DMY+K G+++ A  +FR L   ++V+W AMI GY ++   T+ + LF
Sbjct: 468 GFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLF 527

Query: 357 EQLKTVRDLQPDSVTFLNVLAACS 380
           ++++  + ++ D++ F + ++AC+
Sbjct: 528 KEMQD-QGIKSDNIGFASAISACA 550



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 185/430 (43%), Gaps = 45/430 (10%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD 103
           L+ FY     L  A  +F E+P  S+  WN + + ++      +   LF  +    +  D
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 104 AYSFTSALAAC-GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
              F   L  C G   S +    IH+K +    E    I N LID+Y K G +  A  VF
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 163 GEMIDKDIISWNSVIAASARNGNLELA-----------------FGF---LHRLP----- 197
             +  +D +SW ++I+  ++NG  E A                 F F   LH L      
Sbjct: 223 ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGF 282

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
           + +T   N ++   ++ G++  A  I   M   +  S+NS+++G   +  +  AL LF +
Sbjct: 283 SSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKK 342

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M       D  T +++LS  A + AL  G   HS  IK G+ + IVV  +LLD+Y KC  
Sbjct: 343 MNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSD 402

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           ++ A   F  LC             Y +  +L K  ++F Q++ +  + P+  T+ ++L 
Sbjct: 403 IKTAHEFF--LC-------------YGQLDNLNKSFQIFTQMQ-IEGIVPNQFTYPSILK 446

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
            C  T +    + E   +     G +  V     +I +  + G++  A ++ R L     
Sbjct: 447 TC--TTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDV 504

Query: 438 GVVWRALLSA 447
            V W A+++ 
Sbjct: 505 -VSWTAMIAG 513



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 110/227 (48%), Gaps = 20/227 (8%)

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
           ++I+    FGD+  A+ +   MP  + S WN I   ++    +     LF  M +K+V  
Sbjct: 102 KLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEF 161

Query: 266 DEYTFSTMLSGIAGLSALTWGML--IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
           DE  F+ +L G +G +A+++  +  IH+  I  G ++S  + + L+D+Y K G +  A  
Sbjct: 162 DERIFAVVLRGCSG-NAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKK 220

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F +L  ++ V+W AMI+G ++NG   + + LF Q+               VL+AC  T 
Sbjct: 221 VFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI---------------VLSAC--TK 263

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
           + F +  +    +    G       C +++ L  + G +  A+++  
Sbjct: 264 VEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFH 310


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 168/553 (30%), Positives = 278/553 (50%), Gaps = 43/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +LR    L      +++H ++++ GF S+V V  AL+  Y K   +  A  +
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+   +SWN++ISGY ++    + L LF  +    +  D  + TS ++AC  LG  
Sbjct: 253 FDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDE 312

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +H  ++K      V + N LI M+   G  ++A  VF +M  KD++SW ++I+  
Sbjct: 313 RLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGY 372

Query: 181 ARNGNLELAFG----FLHRLPNPDTISYNEVINGIAQFGDIEDAIM-------------- 222
            +NG  E A        H    PD I+   V++  A  G ++  IM              
Sbjct: 373 EKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYV 432

Query: 223 ---------------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                                +   +P+ N  SW SI+ G     R  EAL  F +M   
Sbjct: 433 IVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS 492

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
             P +  T  ++LS  A + AL+ G  IH+  ++ GL     + +ALLDMY +CG++E A
Sbjct: 493 LKP-NSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPA 551

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            + F S C K++ +WN ++TGYA+ G     +ELF ++    D+ PD +TF ++L ACS 
Sbjct: 552 WNQFNS-CEKDVASWNILLTGYAQQGKGGLAVELFHKM-IESDVNPDEITFTSLLCACSR 609

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           + +  D + EYFESM   + I P ++H  S++ L+G+ G +  A   I+++       +W
Sbjct: 610 SGMVTDGL-EYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIW 668

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL+A     ++++  ++A  + +++  S   Y++LCNLY   G WD  + +R  MRE 
Sbjct: 669 GALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMREN 728

Query: 502 GLRKEAGCSWIEV 514
            L  + GCSW+EV
Sbjct: 729 RLTVDPGCSWVEV 741



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/397 (29%), Positives = 200/397 (50%), Gaps = 43/397 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           ++H Y+ K+     V +  AL+  + +   L +A  +F ++ +  + SWN L+ GY ++G
Sbjct: 115 RVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAG 174

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
            + +ALNL+  +    I  D Y+F   L  CG L  L  G  +H  +++Y  E  V + N
Sbjct: 175 YFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVN 234

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLPNP 199
            LI MY KCG +  A  VF  M  +D ISWN++I+    N      L L F       +P
Sbjct: 235 ALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDP 294

Query: 200 DTISYNEVINGIAQFGD-----------------------------------IEDAIMIL 224
           D ++   VI+     GD                                    ++A M+ 
Sbjct: 295 DLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVF 354

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPE-ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
           S M   +  SW ++++GY  +N +PE A+  +  M+ + V  DE T +++LS  AGL  L
Sbjct: 355 SKMEFKDLVSWTAMISGY-EKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLL 413

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G+++H    + GL + ++VA++L+DMYSKC  ++ A  +F  +  KN+++W ++I G 
Sbjct: 414 DKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGL 473

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             N    + +  F+Q+  +  L+P+SVT ++VL+AC+
Sbjct: 474 RLNYRSFEALFFFQQM--ILSLKPNSVTLVSVLSACA 508



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 172/380 (45%), Gaps = 45/380 (11%)

Query: 45  MGFYRKIN----SLADAHKMFVEIPQP-SVVSWNSLISGYVQSGKYRKALNLFVELERSE 99
           + F R I     SL   H++ V  P   +  + NSLI      G   KAL     ++  +
Sbjct: 30  LNFSRNIQTRQISLRKHHEISVLNPSSITAQNPNSLILELCLKGDLEKALIHLDSMQELQ 89

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159
           +  +  ++ + L  C    +   G  +HS + K     GV + N L+ M+ + G + +A 
Sbjct: 90  VSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAW 149

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISY----------- 204
            VFG+M ++D+ SWN ++   A+ G  + A    HR+      PD  ++           
Sbjct: 150 YVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLP 209

Query: 205 ------------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                                   N +I    + GDI  A ++   MP  +  SWN++++
Sbjct: 210 DLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMIS 269

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GY   +   E L LF  M+   V  D  T ++++S    L     G  +H  VIK G  A
Sbjct: 270 GYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVA 329

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
            + V ++L+ M+S  G  + A+ +F  +  K+LV+W AMI+GY +NG   K +E +  ++
Sbjct: 330 EVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIME 389

Query: 361 TVRDLQPDSVTFLNVLAACS 380
               + PD +T  +VL+AC+
Sbjct: 390 H-EGVVPDEITIASVLSACA 408


>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial [Vitis vinifera]
          Length = 681

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 157/508 (30%), Positives = 275/508 (54%), Gaps = 45/508 (8%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYADA-- 104
           Y +   + +A ++F  + + +VVSWN++++G++Q+G   +A+  F+ + ER      A  
Sbjct: 172 YTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALV 231

Query: 105 ------------------------------YSFTSALAACGQLGSLQLGMAIHSKIVKYS 134
                                         +++   LA  GQ G +     +  +I  Y 
Sbjct: 232 AGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYD 291

Query: 135 --------LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNL 186
                    ER VV  N +I  Y K   +  A  +F +M ++D ISWN++I+   R  ++
Sbjct: 292 GGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDM 351

Query: 187 ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246
           E A+     +PNPDT+++N +I+G AQ G++E A  + +++P  N  SWNS++ GY N  
Sbjct: 352 EEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNG 411

Query: 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
               A  L+ +M  +    D +T S++LS  +G +AL  GM IH  + K  +   I + +
Sbjct: 412 DYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVI-PDIPINN 470

Query: 307 ALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           +L+ MYS+CG +  A ++F  +  +K +++WNAMI GYA +G     +ELFE +K ++ +
Sbjct: 471 SLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLK-V 529

Query: 366 QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425
           +P  +TF++VL AC+H      +   +F+SM  ++GI+P +EH  S++ ++G+ G++  A
Sbjct: 530 RPTYITFISVLNACAHAGF-VKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEA 588

Query: 426 QRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485
             +I  + F     VW ALL A    +++++AR++A  ++KLE +S   YV+L N+Y   
Sbjct: 589 MDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAPYVLLHNMYADV 648

Query: 486 GNWDVASVMRNFMRERGLRKEAGCSWIE 513
           G WD A+ MR  M    +RK+ G SW++
Sbjct: 649 GQWDNATEMRMMMERNNIRKQPGYSWVD 676



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/477 (22%), Positives = 228/477 (47%), Gaps = 74/477 (15%)

Query: 24  QLHCYI-----LKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISG 78
            LHC++      K+    +++     +    +   + +A  +F  +PQ ++V+WNS+I+G
Sbjct: 48  HLHCFVSTLQQPKNSVSLDLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITG 107

Query: 79  YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
           YV+  +  KA  LF E+   ++ +     +  ++  G+   ++ G  +  ++     ER 
Sbjct: 108 YVRRREMAKARKLFDEMPDRDVVSWNLMISGYVSCQGRW--VEEGRHLFDEMP----ERD 161

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN 198
            V  N +I  Y + G +++A+ +F  M +++++SWN+++    +NG++E A  F  R+P 
Sbjct: 162 CVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPE 221

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS------SWNSILTGYVNRNRVPEAL 252
            D+ S + ++ G+ Q G++++A  IL +    +        ++N +L GY    RV +A 
Sbjct: 222 RDSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKAR 281

Query: 253 HLFGEM----------------------------QSKDV-----------PMDEYTFSTM 273
            LF ++                            +++D+             D  +++TM
Sbjct: 282 QLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTM 341

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           +SG   +S +    ++     ++  +   +  ++++  +++ G +E+A ++F ++ +KNL
Sbjct: 342 ISGYVRMSDMEEAWML----FQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNL 397

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS-----HTDIPFDK 388
           V+WN+MI GY  NGD     EL+ Q+  ++  +PD  T  +VL+ CS     H  +    
Sbjct: 398 VSWNSMIAGYENNGDYKGATELYRQM-LLQGEKPDRHTLSSVLSVCSGFAALHLGM---- 452

Query: 389 VSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
             +  + +TK   + P +    S+I +  + G +  A+ +  E+      + W A++
Sbjct: 453 --QIHQQITKT--VIPDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMI 505


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 168/590 (28%), Positives = 293/590 (49%), Gaps = 77/590 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      +L+A ++       +++H  +  SG  ++V V+TAL+  Y K   ++ A ++
Sbjct: 177 PNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEI 236

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ + +VVSW ++I    Q  K  +A  L+ ++ ++ I  +A +F S L +C    +L
Sbjct: 237 FQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEAL 296

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IHS I +  LE  VV+AN LI MY KC  ++DA   F  M  +D+ISW+++IA  
Sbjct: 297 NRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGY 356

Query: 181 ARNG-----NLELAFGFLHRLPN----PDTISY--------------------------- 204
           A++G     +L+  F  L R+      P+ +++                           
Sbjct: 357 AQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVG 416

Query: 205 --------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
                     + N  A+ G I +A  + S M + N  +W S+LT Y+    +  A  +F 
Sbjct: 417 FESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFS 476

Query: 257 EMQSKDV-------------------------------PMDEYTFSTMLSGIAGLSALTW 285
           EM +++V                                 D  T  ++L     LSAL  
Sbjct: 477 EMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALER 536

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G L+H+  +K GL++  VVA++L+ MYSKCG+V  A ++F  +  ++ V WNAM+ GY +
Sbjct: 537 GKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQ 596

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
           +G   + ++LF+++   R + P+ +TF  V++AC    +   +  E F  M +D+ +KP 
Sbjct: 597 HGIGPEAVDLFKRMLKER-VPPNEITFTAVISACGRAGL-VQEGREIFRIMQEDFRMKPG 654

Query: 406 VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465
            +H   M+ L+G+ G +  A+  I+ +       VW ALL A  +  ++ +A  +A  ++
Sbjct: 655 KQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHIL 714

Query: 466 KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           +LE  +  VYV L N+Y   G WD ++ +R  M ++GL+K+ G S IE++
Sbjct: 715 RLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEID 764



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 121/502 (24%), Positives = 222/502 (44%), Gaps = 79/502 (15%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H  + + G   ++++  +L+ FY K   +A   ++F  +    VV+W+S+I+ Y  +
Sbjct: 98  KMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGN 157

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
               KA + F  ++ + I  +  +F S L AC     L+    IH+ +    +E  V +A
Sbjct: 158 NHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVA 217

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------ 196
             LI MY KCG +  A  +F +M +++++SW ++I A+A++  L  AF    ++      
Sbjct: 218 TALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGIS 277

Query: 197 PNP---------------------------------DTISYNEVINGIAQFGDIEDAIMI 223
           PN                                  D +  N +I    +   I+DA   
Sbjct: 278 PNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARET 337

Query: 224 LSSMPSPNSSSWNSILTGYV-----NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
              M   +  SW++++ GY      ++  + E   L   M+ + V  ++ TF ++L   +
Sbjct: 338 FDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACS 397

Query: 279 GLSALTWGMLIHSCVIKQGLDA-------------------------------SIVVASA 307
              AL  G  IH+ + K G ++                               ++V  ++
Sbjct: 398 VHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWAS 457

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           LL MY KCG +  A+ +F  +  +N+V+WN MI GYA++GD+ KV EL   +K V   QP
Sbjct: 458 LLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMK-VEGFQP 516

Query: 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQR 427
           D VT +++L AC    +   +  +   +     G++       S+I +  + GEV  A+ 
Sbjct: 517 DRVTIISILEACG--ALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEART 574

Query: 428 MIRELGFGSYGVVWRALLSASG 449
           +  ++      V W A+L+  G
Sbjct: 575 VFDKIS-NRDTVAWNAMLAGYG 595



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 99/420 (23%), Positives = 199/420 (47%), Gaps = 46/420 (10%)

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           ++G+ ++A+ L   +++  +  ++ ++   +  C +L   + G  +H ++ +  L   + 
Sbjct: 55  KAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIY 114

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-- 198
           + N LI+ Y K G V     VF  M  +D+++W+S+IAA A N +   AF    R+ +  
Sbjct: 115 LGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDAN 174

Query: 199 --PDTISYNEVINGIAQF-----------------------------------GDIEDAI 221
             P+ I++  ++     +                                   G+I  A 
Sbjct: 175 IEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLAC 234

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            I   M   N  SW +I+       ++ EA  L+ +M    +  +  TF ++L+      
Sbjct: 235 EIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPE 294

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL  G  IHS + ++GL+  +VVA+AL+ MY KC  ++ A   F  + ++++++W+AMI 
Sbjct: 295 ALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIA 354

Query: 342 GYARNG--DLTKVIELFEQLKTVRD--LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397
           GYA++G  D   + E+F+ L+ +R   + P+ VTF+++L ACS      ++  +    ++
Sbjct: 355 GYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACS-VHGALEQGRQIHAEIS 413

Query: 398 KDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
           K  G +       ++  +  + G ++ A+++  ++   +  V W +LL+    C DL  A
Sbjct: 414 K-VGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNV-VAWASLLTMYIKCGDLTSA 471



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 129/257 (50%), Gaps = 17/257 (6%)

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
           +I YN   NG A  G+          +  P S S   +        R+ EA+ L G ++ 
Sbjct: 25  SIVYN---NGFASTGE---------ELAGPRSVSGGEVWR-LCKAGRLKEAIQLLGIIKQ 71

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           + + ++  T+  ++   A L     G ++H  + + GL   I + ++L++ YSK G V  
Sbjct: 72  RGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVAS 131

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            + +FR +  +++VTW++MI  YA N    K  + FE++K   +++P+ +TFL++L AC+
Sbjct: 132 VEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDA-NIEPNRITFLSILKACN 190

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           +  +  +K  E   ++ K  G++  V    ++I +  + GE+  A  + +++   +  V 
Sbjct: 191 NYSM-LEKARE-IHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNV-VS 247

Query: 441 WRALLSASGACSDLDVA 457
           W A++ A+     L+ A
Sbjct: 248 WTAIIQANAQHRKLNEA 264


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 169/557 (30%), Positives = 285/557 (51%), Gaps = 43/557 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+    LL ASS LG + Y + +H +++      N+ + TAL+  Y K  S+ DA K+
Sbjct: 215 PNEFTFVKLLAASSFLGLN-YGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKV 273

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
                +  V  W ++ISG+ QS K+R+A+  F E+E S +  + ++++  L AC  + +L
Sbjct: 274 SKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILAL 333

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS-VEDAIGVFGEMIDKDIISWNSVIAA 179
            LG  IHS++V   LE  V + N L+DMY KC + +EDA+  F  +   ++ISW S+IA 
Sbjct: 334 DLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAG 393

Query: 180 SARNGNLELA---FGFLHRL---PNPDTISY----------------------------- 204
            + +G  E +   FG +  +   PN  T+S                              
Sbjct: 394 FSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADND 453

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +++  A  G ++DA  + S M   +  ++ S+ T          AL++   M  
Sbjct: 454 VVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNK 513

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            DV MD ++ ++ LS  AG+  +  G  +H   +K GL + I V++ L+D+Y KCG +  
Sbjct: 514 DDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHD 573

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A   F  +   + V+WN +I G A NG ++  +  FE ++ +  ++PD +T L VL ACS
Sbjct: 574 AHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMR-LAGVEPDQITCLLVLYACS 632

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H  +  D   +YF+SM + +GI+P ++H   ++ L+G+ G +  A  +I  + F    ++
Sbjct: 633 HGGL-VDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALI 691

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           ++ LL A     ++ +    A + ++L+      YV+L NLY   G  ++    R  MRE
Sbjct: 692 YKTLLGACKLHGNIPLGEHMARQGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRE 751

Query: 501 RGLRKEAGCSWIEVENV 517
           RG+RK  G SW+E  N+
Sbjct: 752 RGVRKNPGQSWMEERNM 768



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 135/552 (24%), Positives = 255/552 (46%), Gaps = 55/552 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+ L   LR+ S L    +  +    + KSGF SN  + +AL+ FY K     +A+++
Sbjct: 114 PNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRV 173

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    +VSW  ++S +V++G + +AL L+  + ++ +  + ++F   LAA   LG L
Sbjct: 174 FEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLG-L 232

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H+ ++ + +E  +V+   L+DMY KC S+EDA+ V    ++ D+  W ++I+  
Sbjct: 233 NYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGF 292

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQF---------------------- 214
            ++     A    H +      P+  +Y+ ++N  +                        
Sbjct: 293 TQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDV 352

Query: 215 --GD------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
             G+            IEDA+     + SPN  SW S++ G+       E++ +FG MQ 
Sbjct: 353 SVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQG 412

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             V  + +T ST+L     + +LT    +H  +IK   D  +VV +AL+D Y+  G V+ 
Sbjct: 413 VGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDD 472

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +   +  ++++T+ ++ T   + G+    + +   +    D++ D  +  + L+A +
Sbjct: 473 AWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNK-DDVRMDGFSLASFLSAAA 531

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
              IP  +  +     +   G+   +     ++ L G+ G +  A R   E+      V 
Sbjct: 532 --GIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPD-AVS 588

Query: 441 WRAL---LSASGACSDLDVARISAAEVIKLEG-DSDYVYVMLCNLYTSHGNW-DVASVMR 495
           W  L   L+++G  S    + +SA E ++L G + D +  +L     SHG   D+     
Sbjct: 589 WNGLIFGLASNGHVS----SALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMGLDYF 644

Query: 496 NFMRER-GLRKE 506
             MRE+ G+R +
Sbjct: 645 QSMREKHGIRPQ 656



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 195/394 (49%), Gaps = 40/394 (10%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H  I+K GF  ++F+S  L+  Y K   +A+A ++F E+P   V SW  L+S Y + G 
Sbjct: 37  IHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGN 96

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           + +AL LF  +  S  Y + ++ ++AL +C  L     G    + + K   +   V+ + 
Sbjct: 97  HEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSA 156

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------PN 198
           LID Y KCG  ++A  VF  M + DI+SW  ++++    G+   A    HR+      PN
Sbjct: 157 LIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPN 216

Query: 199 PDT------------ISYNEVING--------------------IAQFGDIEDAIMILSS 226
             T            ++Y ++++                       +   IEDA+ +   
Sbjct: 217 EFTFVKLLAASSFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKL 276

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
               +   W +I++G+    +  EA+  F EM++  V  + +T+S +L+  + + AL  G
Sbjct: 277 TLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLG 336

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQ-VEIADSMFRSLCRKNLVTWNAMITGYAR 345
             IHS V+  GL+  + V ++L+DMY KC   +E A   FR +   N+++W ++I G++ 
Sbjct: 337 KQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSE 396

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           +G   + I++F  ++ V  ++P+S T   +L AC
Sbjct: 397 HGLEEESIKVFGAMQGV-GVRPNSFTLSTILGAC 429



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 147/301 (48%), Gaps = 41/301 (13%)

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           S++ G+ IHS I+K   +  + ++N L+ +YGKC  V +A  +F EM  +D+ SW  +++
Sbjct: 30  SVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMS 89

Query: 179 ASARNGNLELAFGFLHRL------PNPDTIS-----------YNE--------------- 206
           A  + GN E A      +      PN  T+S           +N                
Sbjct: 90  AYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDS 149

Query: 207 -------VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                  +I+  ++ G  ++A  +   M + +  SW  +++ +V      +AL L+  M 
Sbjct: 150 NPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMI 209

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
              V  +E+TF  +L+  + L  L +G L+H+ ++   ++ ++V+ +AL+DMY KC  +E
Sbjct: 210 QTGVAPNEFTFVKLLAASSFL-GLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIE 268

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  + +     ++  W A+I+G+ ++    + I  F +++T   + P++ T+  +L AC
Sbjct: 269 DAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMET-SGVVPNNFTYSGILNAC 327

Query: 380 S 380
           S
Sbjct: 328 S 328



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 2/176 (1%)

Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
           FG + +A  +   MP  + +SW  +++ Y       EAL LF  M       +E+T ST 
Sbjct: 64  FG-VAEARQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTA 122

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           L   + L     G    + V K G D++ V+ SAL+D YSKCG  + A  +F  +   ++
Sbjct: 123 LRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDI 182

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389
           V+W  M++ +   G  ++ ++L+ ++     + P+  TF+ +LAA S   + + K+
Sbjct: 183 VSWTMMVSSFVEAGSWSQALQLYHRMIQT-GVAPNEFTFVKLLAASSFLGLNYGKL 237


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 162/535 (30%), Positives = 278/535 (51%), Gaps = 41/535 (7%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           + + LH + +KSG +++VFVS+AL+  Y K+  +    ++F ++ + +VVSW ++I+G V
Sbjct: 175 FGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLV 234

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
            +G   +AL  F E+  S++  D+++F  AL A      L  G AIH++ +K   +    
Sbjct: 235 HAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSF 294

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP--- 197
           + N L  MY KCG  +  + +F +M   D++SW ++I    + G  E A     R+    
Sbjct: 295 VINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSN 354

Query: 198 -NPDTISYNEVIN-----GIAQFGD------------------------------IEDAI 221
            +P+  ++  VI+      IA++G+                              ++ A 
Sbjct: 355 VSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSAS 414

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           ++   +   +  SW++I+  Y       EA      M+ +    +E+  S++LS    ++
Sbjct: 415 LVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMA 474

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  +H+ V+  G+D   +V SAL+ MYSKCG VE A  +F  +   N+++W AMI 
Sbjct: 475 LLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMIN 534

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYA +G   + I LFE++ +V  L+PD VTF+ VL ACSH  +  D    YF  MT +Y 
Sbjct: 535 GYAEHGYSQEAINLFEKISSV-GLKPDYVTFIGVLTACSHAGM-VDLGFYYFMLMTNEYQ 592

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I P+ EH   +I L+ + G +  A+ MIR +   +  VVW  LL +     D+D  R +A
Sbjct: 593 ISPSKEHYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTA 652

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++++L+ +S   ++ L N+Y + G W  A+ +R  M+ +G+ KE G SW+ V +
Sbjct: 653 EQLLRLDPNSAGTHIALANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVND 707



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 179/372 (48%), Gaps = 45/372 (12%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYADAYSFT 108
           K   L  +  MF ++     +SW +LI+GYV +    +AL LF  +  +  +  D +  +
Sbjct: 102 KQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMIS 161

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
            AL ACG   ++  G  +H   VK  L   V +++ LIDMY K G +E    VF +M  +
Sbjct: 162 VALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKR 221

Query: 169 DIISWNSVIAASARNG-NLELAFGF---------------------------LH--RLPN 198
           +++SW ++IA     G N+E    F                           LH  +  +
Sbjct: 222 NVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIH 281

Query: 199 PDTIS--YNE---VINGIAQF----GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
             TI   ++E   VIN +A      G  +  + +   M  P+  SW +++T YV +    
Sbjct: 282 TQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEE 341

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
            A+  F  M+  +V  ++YTF+ ++S  A L+   WG  IH  V++ GL  ++ VA++++
Sbjct: 342 HAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIV 401

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR--DLQP 367
            +YSK G ++ A  +F  + RK++++W+ +I  Y++ G      E F+ L  +R    +P
Sbjct: 402 TLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGG---YAKEAFDYLSWMRREGPKP 458

Query: 368 DSVTFLNVLAAC 379
           +     +VL+ C
Sbjct: 459 NEFALSSVLSVC 470



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 189/414 (45%), Gaps = 48/414 (11%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV 69
           L+AS+D     + + +H   +K GF  + FV   L   Y K        ++F ++  P V
Sbjct: 265 LKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDV 324

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
           VSW +LI+ YVQ G+   A+  F  + +S +  + Y+F + ++AC  L   + G  IH  
Sbjct: 325 VSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGH 384

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
           +++  L   + +AN ++ +Y K G ++ A  VF  +  KDIISW+++IA  ++ G  + A
Sbjct: 385 VLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEA 444

Query: 190 FGFLHRL----PNPDTISYNEVIN---------------------GI------------- 211
           F +L  +    P P+  + + V++                     GI             
Sbjct: 445 FDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISM 504

Query: 212 -AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
            ++ G +E+A  I + M   N  SW +++ GY       EA++LF ++ S  +  D  TF
Sbjct: 505 YSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVTF 564

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSL- 328
             +L+  +    +  G      +  +  +  S      ++D+  + G++  A+ M RS+ 
Sbjct: 565 IGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRSMP 624

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS----VTFLNVLAA 378
           C  + V W+ ++     +GD+ +     EQL     L P+S    +   N+ AA
Sbjct: 625 CYTDDVVWSTLLRSCRVHGDVDRGRWTAEQL---LRLDPNSAGTHIALANIYAA 675



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 149/330 (45%), Gaps = 27/330 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+Y    ++ A ++L    + +Q+H ++L+ G +  + V+ +++  Y K   L  A  +
Sbjct: 357 PNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLV 416

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I +  ++SW+++I+ Y Q G  ++A +    + R     + ++ +S L+ CG +  L
Sbjct: 417 FHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALL 476

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H+ ++   ++   ++ + LI MY KCGSVE+A  +F  M   +IISW ++I   
Sbjct: 477 EQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGY 536

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A +G  + A     ++ +    PD +++  V+   +  G ++        M      SP+
Sbjct: 537 AEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPS 596

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  I+       R+ EA H+   M         YT             + W  L+ S
Sbjct: 597 KEHYGCIIDLLCRAGRLSEAEHMIRSMPC-------YT-----------DDVVWSTLLRS 638

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           C +   +D     A  LL +        IA
Sbjct: 639 CRVHGDVDRGRWTAEQLLRLDPNSAGTHIA 668



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 93/186 (50%), Gaps = 2/186 (1%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           + +  N  +  + + G +  +  +   M   +  SW +++ GYVN +   EAL LF  M 
Sbjct: 89  NMLELNSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMW 148

Query: 260 SKD-VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
            +  +  D++  S  L        + +G L+H   +K GL  S+ V+SAL+DMY K G++
Sbjct: 149 VQPGLQRDQFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKI 208

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           E    +F+ + ++N+V+W A+I G    G   + +  F ++  +  +  DS TF   L A
Sbjct: 209 EQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEM-WISKVGYDSHTFAIALKA 267

Query: 379 CSHTDI 384
            + + +
Sbjct: 268 SADSSL 273


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 168/553 (30%), Positives = 278/553 (50%), Gaps = 43/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +LR    L      +++H ++++ GF S+V V  AL+  Y K   +  A  +
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+   +SWN++ISGY ++    + L LF  +    +  D  + TS ++AC  LG  
Sbjct: 253 FDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDE 312

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +H  ++K      V + N LI M+   G  ++A  VF +M  KD++SW ++I+  
Sbjct: 313 RLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGY 372

Query: 181 ARNGNLELAFG----FLHRLPNPDTISYNEVINGIAQFGDIEDAIM-------------- 222
            +NG  E A        H    PD I+   V++  A  G ++  IM              
Sbjct: 373 EKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYV 432

Query: 223 ---------------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                                +   +P+ N  SW SI+ G     R  EAL  F +M   
Sbjct: 433 IVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS 492

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
             P +  T  ++LS  A + AL+ G  IH+  ++ GL     + +ALLDMY +CG++E A
Sbjct: 493 LKP-NSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPA 551

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            + F S C K++ +WN ++TGYA+ G     +ELF ++    D+ PD +TF ++L ACS 
Sbjct: 552 WNQFNS-CEKDVASWNILLTGYAQQGKGGLAVELFHKM-IESDVNPDEITFTSLLCACSR 609

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           + +  D + EYFESM   + I P ++H  S++ L+G+ G +  A   I+++       +W
Sbjct: 610 SGMVTDGL-EYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIW 668

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL+A     ++++  ++A  + +++  S   Y++LCNLY   G WD  + +R  MRE 
Sbjct: 669 GALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMREN 728

Query: 502 GLRKEAGCSWIEV 514
            L  + GCSW+EV
Sbjct: 729 RLTVDPGCSWVEV 741



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/397 (29%), Positives = 200/397 (50%), Gaps = 43/397 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           ++H Y+ K+     V +  AL+  + +   L +A  +F ++ +  + SWN L+ GY ++G
Sbjct: 115 RVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAG 174

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
            + +ALNL+  +    I  D Y+F   L  CG L  L  G  +H  +++Y  E  V + N
Sbjct: 175 YFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVN 234

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLPNP 199
            LI MY KCG +  A  VF  M  +D ISWN++I+    N      L L F       +P
Sbjct: 235 ALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDP 294

Query: 200 DTISYNEVINGIAQFGD-----------------------------------IEDAIMIL 224
           D ++   VI+     GD                                    ++A M+ 
Sbjct: 295 DLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVF 354

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPE-ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
           S M   +  SW ++++GY  +N +PE A+  +  M+ + V  DE T +++LS  AGL  L
Sbjct: 355 SKMEFKDLVSWTAMISGY-EKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLL 413

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G+++H    + GL + ++VA++L+DMYSKC  ++ A  +F  +  KN+++W ++I G 
Sbjct: 414 DKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGL 473

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             N    + +  F+Q+  +  L+P+SVT ++VL+AC+
Sbjct: 474 RLNYRSFEALFFFQQM--ILSLKPNSVTLVSVLSACA 508



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 172/380 (45%), Gaps = 45/380 (11%)

Query: 45  MGFYRKIN----SLADAHKMFVEIPQP-SVVSWNSLISGYVQSGKYRKALNLFVELERSE 99
           + F R I     SL   H++ V  P   +  + NSLI      G   KAL     ++  +
Sbjct: 30  LNFSRNIQTRQISLRKHHEISVLNPSSITAQNPNSLILELCLKGDLEKALIHLDSMQELQ 89

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159
           +  +  ++ + L  C    +   G  +HS + K     GV + N L+ M+ + G + +A 
Sbjct: 90  VSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAW 149

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISY----------- 204
            VFG+M ++D+ SWN ++   A+ G  + A    HR+      PD  ++           
Sbjct: 150 YVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLP 209

Query: 205 ------------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                                   N +I    + GDI  A ++   MP  +  SWN++++
Sbjct: 210 DLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMIS 269

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GY   +   E L LF  M+   V  D  T ++++S    L     G  +H  VIK G  A
Sbjct: 270 GYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVA 329

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
            + V ++L+ M+S  G  + A+ +F  +  K+LV+W AMI+GY +NG   K +E +  ++
Sbjct: 330 EVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIME 389

Query: 361 TVRDLQPDSVTFLNVLAACS 380
               + PD +T  +VL+AC+
Sbjct: 390 H-EGVVPDEITIASVLSACA 408


>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
 gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
          Length = 711

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 171/544 (31%), Positives = 278/544 (51%), Gaps = 49/544 (9%)

Query: 15  DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNS 74
           DLG     QQ+H  I+K G+  +V+  +AL+  Y K   + DA+ +F  +P  + VSWN+
Sbjct: 119 DLG-----QQVHSLIVKIGYEQSVYAGSALLDMYAKCERVEDAYDVFQGMPVRNFVSWNA 173

Query: 75  LISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS 134
           LI G+VQ G    A  L   +++  +  +  +F   L         +L M +H KI+K+ 
Sbjct: 174 LIDGFVQVGDRDTAFWLLDCMQKEGVRVEDGTFAPLLTLLDGDKFYKLTMQLHCKIIKHG 233

Query: 135 LERGVVIANCLIDMYGKCGSVEDAIGVF-GEMIDKDIISWNSVIAASARNGNLELAFGFL 193
           LE    + N  +  Y +CG +EDA  VF G +  +D+++WNS++ A   +   E AF   
Sbjct: 234 LEFYNALCNATLTAYSECGLLEDAKRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLF 293

Query: 194 HRLP----NPDTISYNEVINGI-----AQFGD---------------------------- 216
             +      PD  +Y  VI+         +G                             
Sbjct: 294 LEMQGFGFEPDIYTYTCVISACFAAAHKNYGKSFHALVIKRGLEESVTICNALITMYLKL 353

Query: 217 ----IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
               +E A+ +  SM S +  SWNSILTG+       +AL LFG M+S    +D+Y +S 
Sbjct: 354 NNKSMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSLEEIDDYAYSA 413

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332
           +L   + L+ L  G  IH   +K G D++  VAS+L+ MYSKCG +E A   F    +++
Sbjct: 414 VLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTTKES 473

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
            +TWN+++  YA++G     ++LF  ++  R+++ D VTF+ VL ACSH  +  ++    
Sbjct: 474 SITWNSIMFAYAQHGQGDVALDLFSIMRE-REVKLDHVTFVAVLTACSHVGL-VEQGRCV 531

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
            +SM  DYGI P +EH    + L G+ G +  A+ +I  + F    +V + LL A  AC 
Sbjct: 532 LKSMESDYGIPPRMEHYACAVDLFGRAGYLEEAKALIDSMPFQPNAMVLKTLLGACRACG 591

Query: 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           ++++A   A++++++E +    YV+L N+Y     WD  + +   MRER ++K  G SWI
Sbjct: 592 NIELAAQVASQLLEVEPEEHCTYVILSNMYGHLKRWDDKASVTRLMRERKVKKVPGWSWI 651

Query: 513 EVEN 516
           EV+N
Sbjct: 652 EVKN 655



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 136/524 (25%), Positives = 236/524 (45%), Gaps = 84/524 (16%)

Query: 26  HCYILKSGFLSNVFVSTALMGFYRKINS--LADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           HC   KSG +S+++V+  ++  Y K  S  L  A K+F E+P    V+WN++I+GYV+SG
Sbjct: 22  HCQAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESG 81

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
               A      ++R    AD Y+F S L          LG  +HS IVK   E+ V   +
Sbjct: 82  NLGAAWEFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAGS 141

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL---------- 193
            L+DMY KC  VEDA  VF  M  ++ +SWN++I    + G+ + AF  L          
Sbjct: 142 ALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRV 201

Query: 194 ------------------------------HRLPNPDTISYNEVINGIAQFGDIEDAIMI 223
                                         H L   + +  N  +   ++ G +EDA  +
Sbjct: 202 EDGTFAPLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNALC-NATLTAYSECGLLEDAKRV 260

Query: 224 LS-SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
              ++ + +  +WNS+L  Y+  ++  +A +LF EMQ      D YT++ ++S     + 
Sbjct: 261 FDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAH 320

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ--VEIADSMFRSLCRKNLVTWNAMI 340
             +G   H+ VIK+GL+ S+ + +AL+ MY K     +E A ++F S+  K+ V+WN+++
Sbjct: 321 KNYGKSFHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSIL 380

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           TG+++ G     ++LF  +++  + + D   +  VL +CS  D+   ++ +    +T   
Sbjct: 381 TGFSQMGFSEDALKLFGHMRSSLE-EIDDYAYSAVLRSCS--DLAILQLGQQIHLLTVKT 437

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
           G         S+I +  + G +  A +   +    S  + W +++ A             
Sbjct: 438 GFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTTKES-SITWNSIMFA------------- 483

Query: 461 AAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504
                                Y  HG  DVA  + + MRER ++
Sbjct: 484 ---------------------YAQHGQGDVALDLFSIMREREVK 506



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 114/235 (48%), Gaps = 6/235 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKIN--SLADAH 58
           P+ Y    ++ A        Y +  H  ++K G   +V +  AL+  Y K+N  S+  A 
Sbjct: 303 PDIYTYTCVISACFAAAHKNYGKSFHALVIKRGLEESVTICNALITMYLKLNNKSMEAAL 362

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
            +F  +     VSWNS+++G+ Q G    AL LF  +  S    D Y++++ L +C  L 
Sbjct: 363 NLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLA 422

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            LQLG  IH   VK   +    +A+ LI MY KCG +EDA   F +   +  I+WNS++ 
Sbjct: 423 ILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTTKESSITWNSIMF 482

Query: 179 ASARNGNLELAFGFL----HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           A A++G  ++A         R    D +++  V+   +  G +E    +L SM S
Sbjct: 483 AYAQHGQGDVALDLFSIMREREVKLDHVTFVAVLTACSHVGLVEQGRCVLKSMES 537



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 6/173 (3%)

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKC--GQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            L H    K G+ + I VA+ +L  YSKC  G + +A  +F  +  K+ VTWN MITGY 
Sbjct: 19  FLTHCQAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYV 78

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
            +G+L    E  + +K  R  Q D  TF ++L   +H       + +   S+    G + 
Sbjct: 79  ESGNLGAAWEFLKSMKR-RGFQADGYTFGSILKGVAHA--CRHDLGQQVHSLIVKIGYEQ 135

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
           +V    +++ +  +   V  A  + + +   ++ V W AL+       D D A
Sbjct: 136 SVYAGSALLDMYAKCERVEDAYDVFQGMPVRNF-VSWNALIDGFVQVGDRDTA 187


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 154/498 (30%), Positives = 269/498 (54%), Gaps = 10/498 (2%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRK--INSLADAHKMFVEIPQPSVVSWNSLISG 78
           Y  QLH  +L+SG   + +VS AL+  Y     ++   A K+F  IP P+V  WN +I G
Sbjct: 48  YLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKG 107

Query: 79  YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
            +++ K  KA+  +  +   +   + +++ +   AC    ++Q G  IH  +VK+ +   
Sbjct: 108 CLENNKLFKAIYFYGRMV-IDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSD 166

Query: 139 VVIANCLIDMYGKCGSVEDAIGVF--GEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196
           V I +  I MY   G +EDA  +F  GE    D++ WN++I    + G LE A G   ++
Sbjct: 167 VHIKSAGIQMYASFGRLEDARKMFYSGE---SDVVCWNTMIDGYLKCGVLEAAKGLFAQM 223

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
           P  +  S+N +ING+A+ G++ DA  +   M   +  SW+S++ GY++  R  EAL +F 
Sbjct: 224 PVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQ 283

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           +MQ ++     +  S++L+  + + A+  G  +H+ + +  +    V+ +ALLDMY+KCG
Sbjct: 284 QMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCG 343

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           ++++   +F  +  + + TWNAMI G A +G     +ELF +L+  R ++P+ +T + VL
Sbjct: 344 RLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGR-MKPNGITLVGVL 402

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
            AC+H     DK    F++M + YG+ P +EH   M+ L+G+ G    A+ +I  +    
Sbjct: 403 TACAHAGF-VDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKP 461

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
              VW ALL A     + D+A      +++LE  +   YV+L N+Y   G +D  S +R 
Sbjct: 462 NAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRK 521

Query: 497 FMRERGLRKEAGCSWIEV 514
            M+ RG++   G S +++
Sbjct: 522 LMKNRGIKTVPGVSIVDL 539



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 92/191 (48%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  ++L  +L A S++G     + +H Y+ ++    +  + TAL+  Y K   L    ++
Sbjct: 292 PGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEV 351

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+ +  + +WN++I G    G+   AL LF +L+   +  +  +    L AC   G +
Sbjct: 352 FEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFV 411

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G+ I   + + Y ++  +    C++D+ G+ G   +A  +   M +  +   W +++ 
Sbjct: 412 DKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLG 471

Query: 179 ASARNGNLELA 189
           A   +GN +LA
Sbjct: 472 ACRIHGNFDLA 482


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 159/556 (28%), Positives = 284/556 (51%), Gaps = 41/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL A + +G     +QLH Y+LK+G   +  +  +L+  Y K   + +A ++
Sbjct: 242 PDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEI 301

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    + +VV WN ++  Y Q     K+ +LF ++  + +  + +++   L  C   G +
Sbjct: 302 FKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEI 361

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IH   +K   E  + ++  LIDMY K G ++ A  +   +  KD++SW S+IA  
Sbjct: 362 NLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGY 421

Query: 181 ARNGNLELAFGFLHRLPN----PDTIS--------------------------------- 203
            ++   + A      +      PD I                                  
Sbjct: 422 VQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADV 481

Query: 204 --YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
             +N ++N  A+ G  ++A  +  ++   +  +WN +++G+       EAL +F +M   
Sbjct: 482 SIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQA 541

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  + +TF + +S  A L+ +  G  IH+ VIK G  +   VA+AL+ +Y KCG +E A
Sbjct: 542 GVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDA 601

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F  +  +N V+WN +IT  +++G   + ++LF+Q+K    L+P+ VTF+ VLAACSH
Sbjct: 602 KMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQ-EGLKPNDVTFIGVLAACSH 660

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  + +  YF+SM+ ++GI P  +H   ++ ++G+ G++ RA++ + E+   +  +VW
Sbjct: 661 VGLVEEGLG-YFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVW 719

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LLSA     ++++  ++A  +++LE      YV+L N Y   G W     +R  M++R
Sbjct: 720 RTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDR 779

Query: 502 GLRKEAGCSWIEVENV 517
           G+RKE G SWIEV+NV
Sbjct: 780 GVRKEPGRSWIEVKNV 795



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 127/487 (26%), Positives = 234/487 (48%), Gaps = 45/487 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  YVL  +L A +        + +H  + K G  S   V  AL+  Y +  SL+ A ++
Sbjct: 141 PTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERV 200

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P    V++N+LIS + Q G    AL +F E+  S    D  +  S LAAC  +G L
Sbjct: 201 FSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDL 260

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +HS ++K  +    +I   L+D+Y KCG + +A+ +F      +++ WN ++ A 
Sbjct: 261 NKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAY 320

Query: 181 ARNGNLELAFGFLHRL------PNP-------DTISYNEVIN------------------ 209
            +  +L  +F    ++      PN         T +Y   IN                  
Sbjct: 321 GQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDM 380

Query: 210 ---GI-----AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              G+     +++G ++ A  IL  + + +  SW S++ GYV      EAL  F +MQ  
Sbjct: 381 YVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLF 440

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D    ++ +S  AG+ A+  G  IHS V   G  A + + +AL+++Y++CG+ + A
Sbjct: 441 GIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEA 500

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            S+F ++  K+ +TWN M++G+A++G   + +E+F ++     ++ +  TF++ ++A ++
Sbjct: 501 FSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQA-GVKYNVFTFVSSISASAN 559

Query: 382 -TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
             DI   K  +   +     G     E   ++I L G+ G +  A+    E+   ++ V 
Sbjct: 560 LADI---KQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNH-VS 615

Query: 441 WRALLSA 447
           W  ++++
Sbjct: 616 WNTIITS 622



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 179/395 (45%), Gaps = 40/395 (10%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H   +  G   +      L+  Y K   +  A ++F ++     VSW +++SGY ++G 
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
             +A+ L+ ++  S +    Y  +S L+AC +    + G  +H+++ K       V+ N 
Sbjct: 124 GEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNA 183

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPD 200
           LI +Y + GS+  A  VF EM   D +++N++I+  A+ GN E A      +      PD
Sbjct: 184 LIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPD 243

Query: 201 TISYNEVINGIAQFGD-----------------------------------IEDAIMILS 225
            ++   ++   A  GD                                   I +A+ I  
Sbjct: 244 CVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFK 303

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           S    N   WN +L  Y   + + ++  LF +M +  V  +E+T+  +L        +  
Sbjct: 304 SGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINL 363

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  IH   IK G ++ + V+  L+DMYSK G ++ A  +   L  K++V+W +MI GY +
Sbjct: 364 GEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQ 423

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +    + +E F+ ++    + PD++   + ++AC+
Sbjct: 424 HEFCKEALETFKDMQLF-GIWPDNIGLASAISACA 457



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 133/259 (51%), Gaps = 12/259 (4%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           D I+ N +I+  A+ G ++ A  +   + + ++ SW ++L+GY       EA+ L+ +M 
Sbjct: 76  DRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMH 135

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
              V    Y  S++LS     +    G L+H+ V KQG  +  VV +AL+ +Y + G + 
Sbjct: 136 CSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLS 195

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           +A+ +F  +   + VT+N +I+ +A+ G+    +E+FE+++ +    PD VT  ++LAAC
Sbjct: 196 LAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMR-LSGWTPDCVTIASLLAAC 254

Query: 380 SHT-DIPFDKVSEYF---ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           +   D+   K    +     M+ DY I+       S++ L  + G +  A  + +  G  
Sbjct: 255 ASIGDLNKGKQLHSYLLKAGMSPDYIIEG------SLLDLYVKCGVIVEALEIFKS-GDR 307

Query: 436 SYGVVWRALLSASGACSDL 454
           +  V+W  +L A G  SDL
Sbjct: 308 TNVVLWNLMLVAYGQISDL 326



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 8/245 (3%)

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           M    ++S N  LTG++      + L LF     +   +    F+  L    G S   W 
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRG-SVKHWP 59

Query: 287 ML--IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
           ++  IH+  I  GL    +  + L+D+Y+K G V+ A  +F  L  ++ V+W AM++GYA
Sbjct: 60  LVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYA 119

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           RNG   + + L+ Q+     + P      +VL+AC+   + F++       + K      
Sbjct: 120 RNGLGEEAVGLYHQMHC-SGVVPTPYVLSSVLSACTKAAL-FEQGRLVHAQVYKQGSCSE 177

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
           TV    ++I L  + G +  A+R+  E+ +    V +  L+S    C + + A +   E 
Sbjct: 178 TVVG-NALIALYLRFGSLSLAERVFSEMPYCDR-VTFNTLISRHAQCGNGESA-LEIFEE 234

Query: 465 IKLEG 469
           ++L G
Sbjct: 235 MRLSG 239


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 163/557 (29%), Positives = 291/557 (52%), Gaps = 43/557 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    ++++ S L      +QLH ++LKS F +++    AL+  Y K + +ADA  +
Sbjct: 197 PDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINV 256

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY-ADAYSFTSALAACGQLGS 119
           F  I    ++SW S+I+G+ Q G   +AL  F E+    +Y  + + F SA +AC +L  
Sbjct: 257 FSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLE 316

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
              G  IH   +K+ L   +     L DMY KCG +E A  VF  +   D+++WN++IA 
Sbjct: 317 PDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAG 376

Query: 180 SARNGNLELAFGFLHRL------PNPDTI--------------------SY--------- 204
            A   N + +  F  ++      PN  T+                    SY         
Sbjct: 377 FASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLD 436

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSP-NSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
               N +++  ++  ++ DA+ +   + +  +  SWN++LT  + +N+  E L L   M 
Sbjct: 437 IPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMF 496

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           +  +  D  T + +L     +++   G  IH  ++K GL+  I V++AL++MY+KCG +E
Sbjct: 497 ASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLE 556

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  MF S+   ++++W+++I GYA+ G   +  ELF  ++ +  ++P+ +TF+ +L AC
Sbjct: 557 CARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGL-GVKPNEITFVGILTAC 615

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH  +  + +  Y  +M +DY I PT EHC  M+ L+ + G +  A+  I+++ F    V
Sbjct: 616 SHIGMVEEGLKLY-RTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDVV 674

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           VW+ LL+A     +L+V + +A  V+K++  +    VMLCN++ S G+W   + +R+ MR
Sbjct: 675 VWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMR 734

Query: 500 ERGLRKEAGCSWIEVEN 516
              + K  G SWIE+++
Sbjct: 735 RMDVGKVPGQSWIEIKD 751



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/470 (26%), Positives = 219/470 (46%), Gaps = 50/470 (10%)

Query: 8   HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP 67
           HL+ A S L    + +++H ++L   +  ++ +   ++  Y K  SL +A  MF  +P  
Sbjct: 103 HLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLK 162

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
           +VVSW S+ISGY + G+   A+ L+V++ RS    D ++F S + +C  L   +L   +H
Sbjct: 163 NVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLH 222

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-NL 186
           + ++K      ++  N LI MY K   + DAI VF  +I KD+ISW S+IA  ++ G  L
Sbjct: 223 AHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYEL 282

Query: 187 EL----------------------AFGFLHRLPNPDTISYNEVINGI------------- 211
           E                       AF    +L  PD       I+G+             
Sbjct: 283 EALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDC---GRQIHGLCIKFGLGSDLFAG 339

Query: 212 -------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
                  A+ G +E A  +   +  P+  +WN+I+ G+ + +   E+   F +M+   + 
Sbjct: 340 CSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLV 399

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
            ++ T  ++L   +    L  G+ +HS ++K G +  I V ++LL MYSKC  +  A  +
Sbjct: 400 PNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQV 459

Query: 325 FRSLCRK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           F  +  K ++V+WN ++T   +     +V+ L + +   R ++PD VT  NVL   S   
Sbjct: 460 FEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASR-IKPDHVTLTNVLV--SSGQ 516

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
           I   +V           G+   +    ++I +  + G +  A++M   +G
Sbjct: 517 IASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIG 566



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 217/466 (46%), Gaps = 62/466 (13%)

Query: 87  KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
           KA ++F +   S +   + ++T  + AC  L SL+ G  IH  ++  + +  +++ N ++
Sbjct: 83  KAFDIFQKCSSSPL--KSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHIL 140

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE------------------L 188
            MYGKCGS+++A  +F  M  K+++SW S+I+  +R G  +                   
Sbjct: 141 SMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHF 200

Query: 189 AFGFL------------------HRLPN---PDTISYNEVINGIAQFGDIEDAIMILSSM 227
            FG +                  H L +    D I+ N +I+   +F  + DAI + S +
Sbjct: 201 TFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRI 260

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV-PMDEYTFSTMLSGIAGLSALTWG 286
              +  SW S++ G+       EAL  F EM S+ V   +E+ F +  S  + L     G
Sbjct: 261 IIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCG 320

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
             IH   IK GL + +    +L DMY+KCG +E A ++F  + + +LV WNA+I G+A  
Sbjct: 321 RQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASV 380

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD--KVSEYFESMTKDYGIKP 404
            +  +    F Q++    L P+ VT L++L ACS   +     +V  Y   M    G   
Sbjct: 381 SNAKESSSFFSQMRHT-GLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKM----GFNL 435

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA----SGACSDLDVARIS 460
            +  C S++ +  +   +  A ++  ++G  +  V W  LL+A    + A   L + ++ 
Sbjct: 436 DIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLM 495

Query: 461 AAEVIKLEGDSDYVYVMLCNLYTSHG---NWDVASVMRNFMRERGL 503
            A  IK +      +V L N+  S G   +++V S +  F+ + GL
Sbjct: 496 FASRIKPD------HVTLTNVLVSSGQIASYEVGSQIHCFIMKSGL 535



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 76/141 (53%), Gaps = 2/141 (1%)

Query: 244 NRNRVPEALHLFGEMQS-KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
            +N   EAL  F   Q     P+   T++ +++  + L +L  G  IH  ++       +
Sbjct: 74  KKNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDM 133

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
           ++ + +L MY KCG ++ A +MF S+  KN+V+W +MI+GY+R G+    I L+ Q+   
Sbjct: 134 ILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRS 193

Query: 363 RDLQPDSVTFLNVLAACSHTD 383
             + PD  TF +++ +CS  D
Sbjct: 194 GHI-PDHFTFGSIVKSCSGLD 213


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 158/554 (28%), Positives = 285/554 (51%), Gaps = 42/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++     LLRA +        +++H  + + G+ + ++V TA++  Y K  S+ DA ++
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEV 369

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   +VVSW ++I+G+ Q G+  +A   F ++  S I  +  +F S L AC    +L
Sbjct: 370 FDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSAL 429

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  I   I++        +   L+ MY KCGS++DA  VF ++  +++++WN++I A 
Sbjct: 430 KRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAY 489

Query: 181 ARNGNLELAFGFLHRL------PNPDTISY------------------------------ 204
            ++   + A      L      PN  T +                               
Sbjct: 490 VQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDL 549

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +++     GD+  A  + + MP  +  SWN+I+ G+V   +   A   F  MQ  
Sbjct: 550 HVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQES 609

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D+ TF+ +L+  A   ALT G  +H+ + +   D  ++V + L+ MY+KCG +E A
Sbjct: 610 GIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDA 669

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  L +KN+ +W +MI GYA++G   + +ELF Q++    ++PD +TF+  L+AC+H
Sbjct: 670 HQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQ-EGVKPDWITFVGALSACAH 728

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  ++   +F+SM K++ I+P +EH   M+ L G+ G +  A   I ++       VW
Sbjct: 729 AGL-IEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVW 786

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL A     ++++A  +A + ++L+ + + V+V+L N+Y + G W   + MR  M +R
Sbjct: 787 GALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDR 846

Query: 502 GLRKEAGCSWIEVE 515
           G+ K+ G SWIEV+
Sbjct: 847 GVVKKPGQSWIEVD 860



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 218/419 (52%), Gaps = 40/419 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++     +L A +D       ++L+  ILK+G+ +++FV TAL+  + K   + DA K+
Sbjct: 209 PDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKV 268

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P   +V+W S+I+G  + G++++A NLF  +E   +  D  +F S L AC    +L
Sbjct: 269 FDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEAL 328

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H+++ +   +  + +   ++ MY KCGS+EDA+ VF  +  ++++SW ++IA  
Sbjct: 329 EQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGF 388

Query: 181 ARNGNLELAFGFLHRL------PN-------------PDTISYNEVING----------- 210
           A++G ++ AF F +++      PN             P  +   + I             
Sbjct: 389 AQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDD 448

Query: 211 ---------IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     A+ G ++DA  +   +   N  +WN+++T YV   +   AL  F  +  +
Sbjct: 449 RVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKE 508

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  +  TF+++L+      +L  G  +H  ++K GL++ + V++AL+ M+  CG +  A
Sbjct: 509 GIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSA 568

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            ++F  + +++LV+WN +I G+ ++G      + F+ ++    ++PD +TF  +L AC+
Sbjct: 569 KNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQE-SGIKPDKITFTGLLNACA 626



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 193/400 (48%), Gaps = 40/400 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           ++++ +I KSG   ++F+   L+  Y K  +   A ++F ++ +  V SWN L+ GYVQ 
Sbjct: 130 ERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQH 189

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G Y +A  L  ++ +  +  D  +F S L AC    ++  G  +++ I+K   +  + + 
Sbjct: 190 GLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG 249

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
             LI+M+ KCG + DA  VF  +  +D+++W S+I   AR+G  + A     R+      
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 199 PDTISY-----------------------------NEVINGIA------QFGDIEDAIMI 223
           PD +++                              E+  G A      + G +EDA+ +
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEV 369

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +   N  SW +++ G+    R+ EA   F +M    +  +  TF ++L   +  SAL
Sbjct: 370 FDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSAL 429

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  I   +I+ G  +   V +ALL MY+KCG ++ A  +F  + ++N+V WNAMIT Y
Sbjct: 430 KRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAY 489

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
            ++      +  F+ L     ++P+S TF ++L  C  +D
Sbjct: 490 VQHEQYDNALATFQAL-LKEGIKPNSSTFTSILNVCKSSD 528



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 174/347 (50%), Gaps = 40/347 (11%)

Query: 73  NSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132
           N++++   ++G++ +A+ +   ++ S I     ++++ L  C +  +L  G  I++ I K
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF 192
             ++  + + N LI+MY KCG+   A  +F +M +KD+ SWN ++    ++G  E AF  
Sbjct: 139 SGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 193 LHRLPN----PDTISYNEVINGIA-----------------------------------Q 213
             ++      PD  ++  ++N  A                                   +
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
            GDI DA  +  ++P+ +  +W S++TG     R  +A +LF  M+ + V  D+  F ++
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           L       AL  G  +H+ + + G D  I V +A+L MY+KCG +E A  +F  +  +N+
Sbjct: 319 LRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNV 378

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           V+W AMI G+A++G + +    F ++     ++P+ VTF+++L ACS
Sbjct: 379 VSWTAMIAGFAQHGRIDEAFLFFNKM-IESGIEPNRVTFMSILGACS 424


>gi|224096616|ref|XP_002310672.1| predicted protein [Populus trichocarpa]
 gi|222853575|gb|EEE91122.1| predicted protein [Populus trichocarpa]
          Length = 551

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 160/528 (30%), Positives = 279/528 (52%), Gaps = 42/528 (7%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H  IL +GF SN+ +ST L+ FY K+     A K+F  +P+ +VVSW++ ISGY Q+G 
Sbjct: 19  IHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTVVSWSAQISGYSQNGC 78

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           Y+ AL +F+++ R+   A+ +++ S L AC  L  LQ GM I   + K      +++ + 
Sbjct: 79  YQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGCLEKSRFASNLIVQSA 138

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLPNPD 200
           L+D++ KCG +EDA  +FG M ++D++SWN++I A A  G    +  +    +    +PD
Sbjct: 139 LLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGDSFRMFRSMMQEGMSPD 198

Query: 201 TISYNEVING----------------IAQFG-------------------DIEDAIMILS 225
             ++  V+                  I Q G                    +  A  +  
Sbjct: 199 LFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGSLIDAYAKCESLASAHCLYK 258

Query: 226 SMPSPNSSSWNSILTGYV-NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
           SMP  +  S  +++TGY  + N   +AL LF E+Q   + +D+    +M +  A +S+L+
Sbjct: 259 SMPMKDMISCTALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVILCSMFNICANISSLS 318

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  IH+  +K      + + +AL+DMY+K G+++ A+  F  +  KN+++W ++ITGY 
Sbjct: 319 VGRQIHALALKCKPTYDVAMGNALIDMYAKSGEIKDANRAFNEMEEKNVISWTSLITGYG 378

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
            +G   + I LF++++    L+P+ +TFL++L AC+H  +  +   E F +M   Y I P
Sbjct: 379 SHGHGHEAIALFKKME-YEGLKPNDITFLSLLFACNHCGLTGEGW-ECFNNMISKYNILP 436

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
             EH   M+ L  + G +  A  +I ++       +W A+L A     ++ +A  +A  +
Sbjct: 437 RAEHFSCMVDLFARGGLLEEAYNLINKMNIKPNASLWGAILGACYIYGNMPLAEEAAIHL 496

Query: 465 IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
            K++ ++   YV+L ++Y + G+WD A  MR  M ER L+K  G S+I
Sbjct: 497 FKMDPENSVNYVVLADIYAAAGSWDNAWKMRKLMEERNLKKAPGYSFI 544



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 168/382 (43%), Gaps = 44/382 (11%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N++    +LRA + L       Q+   + KS F SN+ V +AL+  + K   + DA  +F
Sbjct: 97  NQFTYGSVLRACTGLRCLQRGMQIQGCLEKSRFASNLIVQSALLDLHSKCGKMEDASYLF 156

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             + +  VVSWN++I  Y   G    +  +F  + +  +  D ++F S L A G    + 
Sbjct: 157 GMMEERDVVSWNAIIGAYAVQGFSGDSFRMFRSMMQEGMSPDLFTFGSVLKASGMASDVI 216

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
               IH  I++      + ++  LID Y KC S+  A  ++  M  KD+IS  +++   A
Sbjct: 217 RVCQIHQLIIQLGYGSHISLSGSLIDAYAKCESLASAHCLYKSMPMKDMISCTALMTGYA 276

Query: 182 RNGNL----------------------------------ELAFGF-LHRL-----PNPDT 201
           R+ N                                    L+ G  +H L     P  D 
Sbjct: 277 RDSNYSSKALDLFKEIQQMHMKIDDVILCSMFNICANISSLSVGRQIHALALKCKPTYDV 336

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+  A+ G+I+DA    + M   N  SW S++TGY +     EA+ LF +M+ +
Sbjct: 337 AMGNALIDMYAKSGEIKDANRAFNEMEEKNVISWTSLITGYGSHGHGHEAIALFKKMEYE 396

Query: 262 DVPMDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            +  ++ TF ++L      GL+   W    ++ + K  +       S ++D++++ G +E
Sbjct: 397 GLKPNDITFLSLLFACNHCGLTGEGWE-CFNNMISKYNILPRAEHFSCMVDLFARGGLLE 455

Query: 320 IADSMFRSL-CRKNLVTWNAMI 340
            A ++   +  + N   W A++
Sbjct: 456 EAYNLINKMNIKPNASLWGAIL 477



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 172/383 (44%), Gaps = 48/383 (12%)

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
           +L  C +  + + G  IH++I+       + ++  LI  Y K G    A  VF  M ++ 
Sbjct: 3   SLQLCIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERT 62

Query: 170 IISWNSVIAASARNGNLELA-FGFLHRLP---NPDTISYNEVINGI-------------- 211
           ++SW++ I+  ++NG  + A   FL  L      +  +Y  V+                 
Sbjct: 63  VVSWSAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQG 122

Query: 212 ---------------------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE 250
                                ++ G +EDA  +   M   +  SWN+I+  Y  +    +
Sbjct: 123 CLEKSRFASNLIVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGD 182

Query: 251 ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLD 310
           +  +F  M  + +  D +TF ++L      S +     IH  +I+ G  + I ++ +L+D
Sbjct: 183 SFRMFRSMMQEGMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGSLID 242

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL-TKVIELFEQLKTVRDLQPDS 369
            Y+KC  +  A  +++S+  K++++  A++TGYAR+ +  +K ++LF++++ +  ++ D 
Sbjct: 243 AYAKCESLASAHCLYKSMPMKDMISCTALMTGYARDSNYSSKALDLFKEIQQMH-MKIDD 301

Query: 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT--VEHCCSMIRLMGQKGEVWRAQR 427
           V   ++   C+  +I    V     ++      KPT  V    ++I +  + GE+  A R
Sbjct: 302 VILCSMFNICA--NISSLSVGRQIHALA--LKCKPTYDVAMGNALIDMYAKSGEIKDANR 357

Query: 428 MIRELGFGSYGVVWRALLSASGA 450
              E+   +  + W +L++  G+
Sbjct: 358 AFNEMEEKNV-ISWTSLITGYGS 379


>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Brachypodium distachyon]
          Length = 678

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 175/544 (32%), Positives = 274/544 (50%), Gaps = 47/544 (8%)

Query: 13  SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSW 72
           S+D G   Y ++LHC ++K+G   ++FV   L+  Y K   L +A K+F  IP  +VVSW
Sbjct: 141 SADFG---YGRRLHCDVVKAGG-GDLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSW 196

Query: 73  NSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132
            S++SG +Q+G  ++ L LF E+ +  I    Y+  S L AC  LGSL  G  IH  ++K
Sbjct: 197 TSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGSLHQGRLIHGSVMK 256

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN------L 186
           + L     I   ++DMY KCG  EDA  VF E+   D++ W ++I    +NG+      L
Sbjct: 257 HGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLL 316

Query: 187 ELAFGFLHRLPNPDTI-------------SYNEVINGIA-QFGDIE-------------- 218
            +   F+  +PN  TI             S    I+GI+ + G +E              
Sbjct: 317 FVDDKFMRIVPNSVTIATVLSASAQLRNLSLGRSIHGISVKLGAVENDVVMNALVDMYAK 376

Query: 219 -----DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
                DA  I   + + +  +WNS++ GY   +   +AL LF  M+ +    D  +    
Sbjct: 377 CKALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVNA 436

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           LS    L  L  G   H+  +K    ++I V +ALL++Y+KC  +  A  +F  +  +N 
Sbjct: 437 LSACVCLGDLLIGKCFHTYAVKHAFMSNIYVNTALLNLYNKCADLPSAQRVFSEMNDRNT 496

Query: 334 VTWNAMITGYARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           VTW AMI GY   GD    I+LF E LK   ++QP+   F ++L+ CSHT +      + 
Sbjct: 497 VTWGAMIGGYGMQGDSAGSIDLFNEMLKD--NIQPNEAVFTSILSTCSHTGM-VTVGKKC 553

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
           FESM   + I P+++H   M+ ++ + G +  A   I+++   +   +W+A L      S
Sbjct: 554 FESMAHYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMQADTSIWQAFLHGCKLHS 613

Query: 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
            L+ A  +   ++ L  D+    VM+ NLYTS+G WD +  +R  M+ERGL K  GCS +
Sbjct: 614 RLEFAEEAVNRMMVLHPDTPDFCVMMSNLYTSYGRWDKSLAIRKLMKERGLVKLPGCSSV 673

Query: 513 EVEN 516
            +EN
Sbjct: 674 GLEN 677



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/454 (26%), Positives = 210/454 (46%), Gaps = 43/454 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+EY +  +L A + LG     + +H  ++K G +SN F++ A++  Y K     DA ++
Sbjct: 226 PSEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQV 285

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+    +V W ++I GY Q+G    AL LFV+ +   I  ++ +  + L+A  QL +L
Sbjct: 286 FDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIATVLSASAQLRNL 345

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG +IH   VK       V+ N L+DMY KC ++ DA G+FG +++KD+++WNS+IA  
Sbjct: 346 SLGRSIHGISVKLGAVENDVVMNALVDMYAKCKALSDAKGIFGRVLNKDVVTWNSLIAGY 405

Query: 181 ARN--GNLELAFGFLHRLPN--PDTISYNEVINGIAQFGD-----------IEDAIMILS 225
           A N  G+  L      R+    PD IS    ++     GD           ++ A M   
Sbjct: 406 AENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVCLGDLLIGKCFHTYAVKHAFM--- 462

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
                N     ++L  Y     +P A  +F EM  ++      T+  M+ G  G+   + 
Sbjct: 463 ----SNIYVNTALLNLYNKCADLPSAQRVFSEMNDRNT----VTWGAMIGGY-GMQGDSA 513

Query: 286 GML-IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT-----WNAM 339
           G + + + ++K  +  +  V +++L   S  G V +    F S+     +T     +  M
Sbjct: 514 GSIDLFNEMLKDNIQPNEAVFTSILSTCSHTGMVTVGKKCFESMAHYFNITPSMKHYACM 573

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS-HTDIPFDKVSEYFESMTK 398
           +   AR G+L + +E  +++     +Q D+  +   L  C  H+ + F +     E++ +
Sbjct: 574 VDVLARAGNLEEALEFIQKMP----MQADTSIWQAFLHGCKLHSRLEFAE-----EAVNR 624

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
              + P     C M+  +      W     IR+L
Sbjct: 625 MMVLHPDTPDFCVMMSNLYTSYGRWDKSLAIRKL 658



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 121/496 (24%), Positives = 217/496 (43%), Gaps = 52/496 (10%)

Query: 1   PNEYVLFH-LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P+   L H LL A + L      + LH  +L  G L  +   T L+  Y  +  LA A +
Sbjct: 25  PDANPLLHRLLPACTTL---PSLRALHARLLAHGLLRGLRAHTKLLSCYAALGDLASARR 81

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER--SEIYADAYSFTSALAACGQL 117
           +  E P P   ++   +  +  +G++ +A+ +  ++ R       D    + AL A  + 
Sbjct: 82  VLDETPHPDAYTYKVALGWHAAAGRHAEAVAVHRDMRRRCPAEQEDVVVLSLALKAAVRS 141

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
                G  +H  +VK      + + N L+DMY K G +++A  VF  + D++++SW S++
Sbjct: 142 ADFGYGRRLHCDVVKAG-GGDLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSWTSML 200

Query: 178 AASARNGNLE----------------------------LAFGFLH--RLPNPDTISYNEV 207
           +   +NG  +                               G LH  RL +   + +  V
Sbjct: 201 SGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLV 260

Query: 208 INGI---------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
            N            + G+ EDA  +   +   +   W +++ GY       +AL LF + 
Sbjct: 261 SNHFITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDD 320

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           +   +  +  T +T+LS  A L  L+ G  IH   +K G   + VV +AL+DMY+KC  +
Sbjct: 321 KFMRIVPNSVTIATVLSASAQLRNLSLGRSIHGISVKLGAVENDVVMNALVDMYAKCKAL 380

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
             A  +F  +  K++VTWN++I GYA N   +  + LF  ++ V+   PD+++ +N L+A
Sbjct: 381 SDAKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMR-VQGSLPDAISVVNALSA 439

Query: 379 C-SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           C    D+   K    F +    +     +    +++ L  +  ++  AQR+  E+     
Sbjct: 440 CVCLGDLLIGKC---FHTYAVKHAFMSNIYVNTALLNLYNKCADLPSAQRVFSEMN-DRN 495

Query: 438 GVVWRALLSASGACSD 453
            V W A++   G   D
Sbjct: 496 TVTWGAMIGGYGMQGD 511


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 154/498 (30%), Positives = 270/498 (54%), Gaps = 10/498 (2%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRK--INSLADAHKMFVEIPQPSVVSWNSLISG 78
           Y  QLH  +L+SG   + +VS AL+  Y     ++   A K+F  IP P+V  WN +I G
Sbjct: 48  YLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKG 107

Query: 79  YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
            +++ K  KA+  +  +   +   + +++ +   AC    ++Q G  IH  +VK+ +   
Sbjct: 108 CLENNKLFKAIYFYGRMV-IDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSD 166

Query: 139 VVIANCLIDMYGKCGSVEDAIGVF--GEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196
           V I +  I MY   G +EDA  +F  GE    D++ WN++I    + G LE A G   ++
Sbjct: 167 VHIKSAGIHMYASFGRLEDARKMFYSGE---SDVVCWNTMIDGYLKCGVLEAAKGLFAQM 223

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
           P  +  S+N +ING+A+ G++ DA  +   M   +  SW+S++ GY++  R  EAL +F 
Sbjct: 224 PVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQ 283

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           +MQ ++     +  S++L+  + + A+  G  +H+ + +  +    V+ +ALLDMY+KCG
Sbjct: 284 QMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCG 343

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           ++++   +F  +  + + TWNAMI G A +G     +ELF +L+  R ++P+ +T + VL
Sbjct: 344 RLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGR-MKPNGITLVGVL 402

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
            AC+H     DK    F++M + YG+ P +EH   M+ L+G+ G    A+ +I  +    
Sbjct: 403 TACAHAGF-VDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKP 461

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
              VW ALL A     + D+A      +++LE  +   YV+L N+Y   G +D  S +R 
Sbjct: 462 NAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRK 521

Query: 497 FMRERGLRKEAGCSWIEV 514
            M++RG++   G S +++
Sbjct: 522 LMKDRGIKTVPGVSIVDL 539



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 92/191 (48%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  ++L  +L A S++G     + +H Y+ ++    +  + TAL+  Y K   L    ++
Sbjct: 292 PGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEV 351

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+ +  + +WN++I G    G+   AL LF +L+   +  +  +    L AC   G +
Sbjct: 352 FEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFV 411

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G+ I   + + Y ++  +    C++D+ G+ G   +A  +   M +  +   W +++ 
Sbjct: 412 DKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLG 471

Query: 179 ASARNGNLELA 189
           A   +GN +LA
Sbjct: 472 ACRIHGNFDLA 482


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 171/535 (31%), Positives = 266/535 (49%), Gaps = 45/535 (8%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q H  I+K     N+FV  AL+  Y K  +L DA ++F  +     V+WN++I  YVQ  
Sbjct: 449 QFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDE 508

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
              +A +LF  +    I +D     S L AC  +  L  G  +H   VK  L+R +   +
Sbjct: 509 NESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGS 568

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF----GFLHRLPNP 199
            LIDMY KCG ++DA  VF  + +  ++S N++IA  ++N NLE A       L R  NP
Sbjct: 569 SLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQN-NLEEAVVLFQEMLTRGVNP 627

Query: 200 DTISYNEVIN------------------------------GIAQFG------DIEDAIMI 223
             I++  ++                               GI+  G       + +A  +
Sbjct: 628 SEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACAL 687

Query: 224 LSSMPSPNSSS-WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
            S + SP S   W  +++G+       EAL  + EM+   V  D+ TF T+L   + LS+
Sbjct: 688 FSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSS 747

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK-NLVTWNAMIT 341
           L  G  IHS +     D   + ++ L+DMY+KCG ++ +  +F  + R+ N+V+WN++I 
Sbjct: 748 LREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLIN 807

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYA+NG     +++F+ ++    + PD +TFL VL ACSH     D   + FE M   YG
Sbjct: 808 GYAKNGYAEDALKIFDSMRQSH-IMPDEITFLGVLTACSHAGKVSDG-RKIFEMMIGQYG 865

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I+  V+H   M+ L+G+ G +  A   I          +W +LL A     D     ISA
Sbjct: 866 IEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISA 925

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++I+LE  +   YV+L N+Y S G W+ A+ +R  MR+RG++K  G SWI+VE 
Sbjct: 926 EKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQ 980



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 117/362 (32%), Positives = 194/362 (53%), Gaps = 6/362 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H   L  G  S   +  A++  Y K   ++ A K F +  +  V +WNS++S Y   
Sbjct: 80  KAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQF-DFLEKDVTAWNSMLSMYSSI 138

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           GK  K L  FV L  ++I+ + ++F+  L+ C +  +++ G  IH  ++K  LER     
Sbjct: 139 GKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCG 198

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
             L+DMY KC  + DA  VF  ++D + + W  + +   + G  E A     R+ +    
Sbjct: 199 GALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHR 258

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
           PD +++  VIN   + G ++DA ++   M SP+  +WN +++G+  R     A+  F  M
Sbjct: 259 PDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNM 318

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           +   V     T  ++LS I  ++ L  G+++H+  IK GL ++I V S+L+ MYSKC ++
Sbjct: 319 RKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKM 378

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           E A  +F +L  KN V WNAMI GYA NG+  KV+ELF  +K+      D  TF ++L+ 
Sbjct: 379 EAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKS-SGYNIDDFTFTSLLST 437

Query: 379 CS 380
           C+
Sbjct: 438 CA 439



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 191/390 (48%), Gaps = 15/390 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++    +L   +      + +Q+HC ++K G   N +   AL+  Y K + ++DA ++
Sbjct: 158 PNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRV 217

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I  P+ V W  L SGYV++G   +A+ +F  +       D  +F + +    +LG L
Sbjct: 218 FEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKL 277

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS----WNSV 176
           +    +  ++        VV  N +I  +GK G    AI  F  M    + S      SV
Sbjct: 278 KDARLLFGEMSSPD----VVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSV 333

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYN-----EVINGIAQFGDIEDAIMILSSMPSPN 231
           ++A     NL+L    +H       ++ N      +++  ++   +E A  +  ++   N
Sbjct: 334 LSAIGIVANLDLGL-VVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKN 392

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              WN+++ GY +     + + LF +M+S    +D++TF+++LS  A    L  G   HS
Sbjct: 393 DVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHS 452

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
            +IK+ L  ++ V +AL+DMY+KCG +E A  +F  +C ++ VTWN +I  Y ++ + ++
Sbjct: 453 IIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESE 512

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +LF+++     +  D     + L AC+H
Sbjct: 513 AFDLFKRMNLC-GIVSDGACLASTLKACTH 541



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 171/387 (44%), Gaps = 52/387 (13%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+HC  +K G   ++   ++L+  Y K   + DA K+F  +P+ SVVS N+LI+GY Q+
Sbjct: 549 KQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQN 608

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL-ERGVVI 141
               +A+ LF E+    +     +F + + AC +  SL LG   H +I K      G  +
Sbjct: 609 -NLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYL 667

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIAASARNGNLELAFGF-------- 192
              L+ MY     + +A  +F E+   K I+ W  +++  ++NG  E A  F        
Sbjct: 668 GISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDG 727

Query: 193 -------------------------------LHRLPNPDTISYNEVINGIAQFGDIEDAI 221
                                           H   + D ++ N +I+  A+ GD++ + 
Sbjct: 728 VLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSS 787

Query: 222 MILSSM-PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
            +   M    N  SWNS++ GY       +AL +F  M+   +  DE TF  +L+  +  
Sbjct: 788 QVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHA 847

Query: 281 SALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNA 338
             ++ G  I   +I Q G++A +   + ++D+  + G ++ AD    +   + +   W++
Sbjct: 848 GKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSS 907

Query: 339 MITGYARNGD-------LTKVIELFEQ 358
           ++     +GD         K+IEL  Q
Sbjct: 908 LLGACRIHGDDIRGEISAEKLIELEPQ 934



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 166/390 (42%), Gaps = 80/390 (20%)

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           +L++G A+HSK +   ++    + N ++D+Y KC                          
Sbjct: 75  ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQ------------------------ 110

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
                                  +SY E      QF  +E  +           ++WNS+
Sbjct: 111 -----------------------VSYAE-----KQFDFLEKDV-----------TAWNSM 131

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           L+ Y +  +  + L  F  +    +  +++TFS +LS  A  + + +G  IH  +IK GL
Sbjct: 132 LSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGL 191

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
           + +     AL+DMY+KC ++  A  +F  +   N V W  + +GY + G   + + +FE+
Sbjct: 192 ERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFER 251

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRL 415
           ++     +PD + F+ V+    +T I   K+ +    F  M+      P V     MI  
Sbjct: 252 MRD-EGHRPDHLAFVTVI----NTYIRLGKLKDARLLFGEMSS-----PDVVAWNVMISG 301

Query: 416 MGQKG-EVWRAQRM--IRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472
            G++G E    +    +R+    S      ++LSA G  ++LD+  +  AE IKL   S+
Sbjct: 302 HGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASN 361

Query: 473 -YVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            YV   L ++Y+     + A+ +   + E+
Sbjct: 362 IYVGSSLVSMYSKCEKMEAAAKVFEALEEK 391


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  271 bits (692), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 161/522 (30%), Positives = 284/522 (54%), Gaps = 41/522 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NEY     L A + L       Q+H  + KS + ++V++ +AL+  Y K  S+A A ++F
Sbjct: 146 NEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVF 205

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             + + ++V+WNSLI+ Y Q+G   +AL +FV +  S +  D  +  S ++AC  L +L+
Sbjct: 206 SGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALK 265

Query: 122 LGMAIHSKIVKYSLER-GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            G+ IH+++VK +  R  +V+ N L+DMY KC  V +A  VF  M  ++++S  S+++  
Sbjct: 266 EGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGY 325

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           AR  +++ A     ++   + +S+N +I G  Q G+ E                      
Sbjct: 326 ARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENE---------------------- 363

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL-- 298
                    EAL LF  ++ + +    YTF  +LS  A L+ L  G   H+ V+KQG   
Sbjct: 364 ---------EALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEF 414

Query: 299 ----DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
               ++ I V ++L+DMY KCG +E    +F  +  ++ V+WNA+I GYA+NG   + ++
Sbjct: 415 QSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQ 474

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
           +F ++    + +PD VT + VL ACSH  +  ++   YF SM +++G+ P  +H   M+ 
Sbjct: 475 IFRKMLVCGE-KPDHVTMIGVLCACSHAGL-VEEGRHYFFSM-EEHGLIPLKDHYTCMVD 531

Query: 415 LMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474
           L+G+ G +  A+ +I  +      VVW +LL+A     ++++ + +A ++++++  +   
Sbjct: 532 LLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGP 591

Query: 475 YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           YV+L N+Y   G W     +R  MR++G+ K+ GCSWIEVE+
Sbjct: 592 YVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVES 633



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 151/286 (52%), Gaps = 32/286 (11%)

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           L R     ++  F   L +C +  S +    +H++I+       + I N LID+YGKC  
Sbjct: 6   LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDC 65

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQF 214
           ++DA  +F                                R+P  +T ++N +I+ + + 
Sbjct: 66  LDDARKLFD-------------------------------RMPQRNTFTWNSLISVLTKS 94

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G +++A  +  SMP P+  SWNS+++G+   +R  E+L  F +M  +D  ++EY+F + L
Sbjct: 95  GFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSAL 154

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
           S  AGL  L  G  +H+ V K      + + SAL+DMYSKCG V  A+ +F  +  +NLV
Sbjct: 155 SACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLV 214

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           TWN++IT Y +NG  ++ +E+F ++     L+PD VT  +V++AC+
Sbjct: 215 TWNSLITCYEQNGPASEALEVFVRMMD-SGLEPDEVTLASVVSACA 259



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 98/196 (50%), Gaps = 7/196 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGF------LSNVFVSTALMGFYRKINSL 54
           P  Y   +LL A ++L      +Q H ++LK GF       S++FV  +L+  Y K  S+
Sbjct: 379 PTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSI 438

Query: 55  ADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC 114
            D  ++F ++ +   VSWN++I GY Q+G   +AL +F ++       D  +    L AC
Sbjct: 439 EDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCAC 498

Query: 115 GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISW 173
              G ++ G      + ++ L        C++D+ G+ G + +A  +   M ++ D + W
Sbjct: 499 SHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVW 558

Query: 174 NSVIAASARNGNLELA 189
            S++AA   +GN+E+ 
Sbjct: 559 GSLLAACKVHGNIEMG 574


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  271 bits (692), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 156/494 (31%), Positives = 264/494 (53%), Gaps = 27/494 (5%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYR--KINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +QLH + LK+   ++ FVS+ L+  Y   KIN L  A  +F  I + S++ WN++I  YV
Sbjct: 33  EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYV 92

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           ++      + LF EL   E   D ++    +  C +LG +Q G  IH   +K      V 
Sbjct: 93  ENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVF 151

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           +   L++MY KCG ++ A  VF  MIDKD++ WNS+I     +GNL              
Sbjct: 152 VQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLI-----DGNL-------------- 192

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +S+N +ING  + GD + A+ +   MP  +  +WN ++ GY    +  +A+ +F  M  
Sbjct: 193 -VSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLK 251

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
                   T  ++LS ++GL+ L  G  IHS + K G +   ++ ++L++MY+KCG +E 
Sbjct: 252 LGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIES 311

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVLAAC 379
           A ++FR++ +K +  W A+I G   +G     + LF E  KT   L+P+++ F+ VL AC
Sbjct: 312 ALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKT--GLKPNAIIFIGVLNAC 369

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +H  +  D   +YF+ M  +Y I+PT+EH   ++ ++ + G +  A+  I  +      V
Sbjct: 370 NHAGL-VDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKV 428

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W +LL  S     +D+   +A  VI++  ++   Y++L N+Y + G W+  S +R  M 
Sbjct: 429 IWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMY 488

Query: 500 ERGLRKEAGCSWIE 513
           +RG RK+ GCS +E
Sbjct: 489 KRGFRKDPGCSSVE 502



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 130/331 (39%), Gaps = 83/331 (25%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + L  +++  + LG     +Q+H   LK GF S+VFV  +L+  Y K   +  A K+
Sbjct: 113 PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKV 172

Query: 61  FVEIPQPSVVSWNSL-----------ISGYVQSGKYRKALNLFVEL-------------- 95
           F  +    VV WNSL           I+GY++SG +  AL LF ++              
Sbjct: 173 FDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAG 232

Query: 96  -ERSEIYADAY----------------SFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
            E +  + DA                 +  S L+A   L  L  G  IHS + K   E  
Sbjct: 233 YELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELD 292

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL-- 196
            ++   LI+MY KCG +E A+ VF  +  K +  W ++I     +G    A      +  
Sbjct: 293 GILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCK 352

Query: 197 ----PN----------------------------------PDTISYNEVINGIAQFGDIE 218
               PN                                  P    Y  +++ + + G +E
Sbjct: 353 TGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLE 412

Query: 219 DAIMILSSMP-SPNSSSWNSILTGYVNRNRV 248
           +A   + +MP SPN   W S+L G  N  ++
Sbjct: 413 EAKNTIENMPISPNKVIWMSLLGGSRNHGKI 443



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L A S L      + +H Y+ K+GF  +  + T+L+  Y K   +  A  +
Sbjct: 256 PSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTV 315

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I +  V  W ++I G    G    AL LF+E+ ++ +  +A  F   L AC   G +
Sbjct: 316 FRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLV 375

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G      ++ +Y +E  +    CL+D+  + G +E+A      M I  + + W S++ 
Sbjct: 376 DDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLG 435

Query: 179 ASARNGNLELA 189
            S  +G +++ 
Sbjct: 436 GSRNHGKIDIG 446


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  271 bits (692), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 159/541 (29%), Positives = 292/541 (53%), Gaps = 51/541 (9%)

Query: 23  QQLHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           +++H +++ +G +   V +   L+  Y K  S+ADA ++F  +     VSWNS+I+G  Q
Sbjct: 333 REVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQ 392

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           +G + +A+  +  + R +I   +++  S+L++C  L   +LG  IH + +K  ++  V +
Sbjct: 393 NGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSV 452

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-----------NLELA- 189
           +N L+ +Y + G + +   +F  M + D +SWNS+I A AR+            N + A 
Sbjct: 453 SNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAG 512

Query: 190 -------------------FGFL----HRLPNPDTI-----SYNEVINGIAQFGDIEDAI 221
                              FG L    H L   + I     + N +I    + G+++   
Sbjct: 513 QKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCE 572

Query: 222 MILSSMPSPNSS-SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
            I S M     + +WNS+++GY++   + +AL L   M      +D + ++T+LS  A +
Sbjct: 573 KIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASV 632

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           + L  GM +H+C ++  L++ +VV SAL+DMYSKCG+++ A   F ++  +N  +WN+MI
Sbjct: 633 ATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMI 692

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           +GYAR+G   + ++LFE +K      PD VTF+ VL+ACSH  +  ++  ++FESM+  Y
Sbjct: 693 SGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGL-LEEGFKHFESMSDSY 751

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC-----SDLD 455
           G+ P +EH   M  ++G+ GE+ + +  I ++      ++WR +L   GAC        +
Sbjct: 752 GLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVL---GACCRANGRKAE 808

Query: 456 VARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           + + +A  + +LE ++   YV+L N+Y + G W+     R  M++  ++KEAG SW+ ++
Sbjct: 809 LGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMK 868

Query: 516 N 516
           +
Sbjct: 869 D 869



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 212/447 (47%), Gaps = 56/447 (12%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
            H  + K+    +V++   L+  Y +      A K+F E+P  + VSW  ++SGY ++G+
Sbjct: 23  FHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGE 82

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQL--GMAIHSKIVKYSLERGVVIA 142
           +++AL    ++ +  I+++ Y+F S L AC ++GS+ +  G  IH  + K S     V++
Sbjct: 83  HKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVS 142

Query: 143 NCLIDMYGKC-GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH------- 194
           N LI MY KC GSV  A+  FG++  K+ +SWNS+I+  ++ G+   AF           
Sbjct: 143 NVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGS 202

Query: 195 ---------------RLPNPDTISYNEV-------------------INGIAQFGDIEDA 220
                           L  PD     ++                   ++  A+ G +  A
Sbjct: 203 RPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYA 262

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK-DVPMDEYTFSTMLSGIAG 279
             + + M + N+ + N ++ G V +    EA  LF +M S  DV  + Y    +LS    
Sbjct: 263 RKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVI--LLSSFPE 320

Query: 280 LS-----ALTWGMLIHSCVIKQGL-DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
            S      L  G  +H  VI  GL D  + + + L++MY+KCG +  A  +F  +  K+ 
Sbjct: 321 YSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDS 380

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393
           V+WN+MITG  +NG   + +E ++ ++   D+ P S T ++ L++C+   + + K+ +  
Sbjct: 381 VSWNSMITGLDQNGCFIEAVERYKSMRR-HDILPGSFTLISSLSSCA--SLKWAKLGQQI 437

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKG 420
              +   GI   V    +++ L  + G
Sbjct: 438 HGESLKLGIDLNVSVSNALMTLYAETG 464



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 123/428 (28%), Positives = 201/428 (46%), Gaps = 53/428 (12%)

Query: 1   PNEYVLFHLLRASSDLGWD--TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           P EY    L+  +  L        +Q+ C I KSG L+++FV + L+  + K  SL+ A 
Sbjct: 204 PTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYAR 263

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE-----RSEIYADAYSFTSALAA 113
           K+F ++   + V+ N L+ G V+     +A  LF+++        E Y    S     + 
Sbjct: 264 KVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSL 323

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVV-IANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS 172
             ++G L+ G  +H  ++   L   +V I N L++MY KCGS+ DA  VF  M DKD +S
Sbjct: 324 AEEVG-LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVS 382

Query: 173 WNSVIAASARNGN----------------LELAFGFLHRLPNPDTISY------------ 204
           WNS+I    +NG                 L  +F  +  L +  ++ +            
Sbjct: 383 WNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESL 442

Query: 205 -----------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR-VPEAL 252
                      N ++   A+ G + +   I SSMP  +  SWNSI+       R +PEA+
Sbjct: 443 KLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAV 502

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
             F   Q     ++  TFS++LS ++ LS    G  IH   +K  +       +AL+  Y
Sbjct: 503 VCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACY 562

Query: 313 SKCGQVEIADSMFRSLC-RKNLVTWNAMITGYARNGDLTKVIEL-FEQLKTVRDLQPDSV 370
            KCG+++  + +F  +  R++ VTWN+MI+GY  N  L K ++L +  L+T + L  DS 
Sbjct: 563 GKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRL--DSF 620

Query: 371 TFLNVLAA 378
            +  VL+A
Sbjct: 621 MYATVLSA 628



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 177/409 (43%), Gaps = 49/409 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  + L   L + + L W    QQ+H   LK G   NV VS ALM  Y +   L +  K+
Sbjct: 413 PGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKI 472

Query: 61  FVEIPQPSVVSWNSLISGYVQSGK-YRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F  +P+   VSWNS+I    +S +   +A+  F+  +R+    +  +F+S L+A   L  
Sbjct: 473 FSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSF 532

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIA 178
            +LG  IH   +K ++       N LI  YGKCG ++    +F  M + +D ++WNS+I+
Sbjct: 533 GELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMIS 592

Query: 179 ASARN----GNLELAFGFLHRLPNPDTISYNEVINGIA---------------------- 212
               N      L+L +  L      D+  Y  V++  A                      
Sbjct: 593 GYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLES 652

Query: 213 -------------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                        + G ++ A+   ++MP  NS SWNS+++GY    +  EAL LF  M+
Sbjct: 653 DVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMK 712

Query: 260 -SKDVPMDEYTFSTMLSGIAGLSALTWGML-IHSCVIKQGLDASIVVASALLDMYSKCGQ 317
                P D  TF  +LS  +    L  G     S     GL   I   S + D+  + G+
Sbjct: 713 LDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGE 772

Query: 318 VE-IADSMFRSLCRKNLVTWNAMITGYAR-NGDLT----KVIELFEQLK 360
           ++ + D + +   + N++ W  ++    R NG       K  E+  QL+
Sbjct: 773 LDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLE 821



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 170/394 (43%), Gaps = 49/394 (12%)

Query: 2   NEYVLFHLLRASSDLG--WDTYCQQLHCYILKSGFLSNVFVSTALMGFYRK-INSLADAH 58
           N+Y    +LRA  ++G     + +Q+H  + K  +  +  VS  L+  Y K I S+  A 
Sbjct: 101 NQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYAL 160

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
             F +I   + VSWNS+IS Y Q+G  R A  +F  ++        Y+F S +     L 
Sbjct: 161 CAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLT 220

Query: 119 S--LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
              ++L   I   I K  L   + + + L+  + K GS+  A  VF +M  ++ ++ N +
Sbjct: 221 EPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGL 280

Query: 177 IAASARNGNLELA---FGFLHRLPNPDTISY----------------------------- 204
           +    R    E A   F  ++ + +    SY                             
Sbjct: 281 MVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVI 340

Query: 205 ------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEAL 252
                       N ++N  A+ G I DA  +   M   +S SWNS++TG        EA+
Sbjct: 341 TTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAV 400

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
             +  M+  D+    +T  + LS  A L     G  IH   +K G+D ++ V++AL+ +Y
Sbjct: 401 ERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLY 460

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
           ++ G +     +F S+   + V+WN++I   AR+
Sbjct: 461 AETGYLNECRKIFSSMPEHDQVSWNSIIGALARS 494


>gi|297744558|emb|CBI37820.3| unnamed protein product [Vitis vinifera]
          Length = 504

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 156/502 (31%), Positives = 273/502 (54%), Gaps = 45/502 (8%)

Query: 54  LADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYADA-------- 104
           + +A ++F  + + +VVSWN++++G++Q+G   +A+  F+ + ER      A        
Sbjct: 1   MDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQN 60

Query: 105 ------------------------YSFTSALAACGQLGSLQLGMAIHSKIVKYS------ 134
                                   +++   LA  GQ G +     +  +I  Y       
Sbjct: 61  GELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDG 120

Query: 135 --LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF 192
              ER VV  N +I  Y K   +  A  +F +M ++D ISWN++I+   R  ++E A+  
Sbjct: 121 GRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWML 180

Query: 193 LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEAL 252
              +PNPDT+++N +I+G AQ G++E A  + +++P  N  SWNS++ GY N      A 
Sbjct: 181 FQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGAT 240

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
            L+ +M  +    D +T S++LS  +G +AL  GM IH  + K  +   I + ++L+ MY
Sbjct: 241 ELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVI-PDIPINNSLITMY 299

Query: 313 SKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371
           S+CG +  A ++F  +  +K +++WNAMI GYA +G     +ELFE +K ++ ++P  +T
Sbjct: 300 SRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLK-VRPTYIT 358

Query: 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431
           F++VL AC+H      +   +F+SM  ++GI+P +EH  S++ ++G+ G++  A  +I  
Sbjct: 359 FISVLNACAHAGF-VKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINS 417

Query: 432 LGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA 491
           + F     VW ALL A    +++++AR++A  ++KLE +S   YV+L N+Y   G WD A
Sbjct: 418 MPFEPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAPYVLLHNMYADVGQWDNA 477

Query: 492 SVMRNFMRERGLRKEAGCSWIE 513
           + MR  M    +RK+ G SW++
Sbjct: 478 TEMRMMMERNNIRKQPGYSWVD 499



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 142/317 (44%), Gaps = 18/317 (5%)

Query: 34  FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFV 93
           F  NV    +++  Y K   +  A  +F ++ +   +SWN++ISGYV+     +A  LF 
Sbjct: 123 FERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQ 182

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
           E+       D  ++ S ++   Q G+L+L  A+ + I + +L    V  N +I  Y   G
Sbjct: 183 EMPNP----DTLTWNSMISGFAQKGNLELARALFATIPQKNL----VSWNSMIAGYENNG 234

Query: 154 SVEDAIGVFGEMI----DKDIISWNSVIAASARNGNLELAFGFLHRLPN---PDTISYNE 206
             + A  ++ +M+      D  + +SV++  +    L L      ++     PD    N 
Sbjct: 235 DYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIPDIPINNS 294

Query: 207 VINGIAQFGDIEDAIMILSSMP-SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
           +I   ++ G I +A  I   +       SWN+++ GY       +AL LF  M+   V  
Sbjct: 295 LITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRP 354

Query: 266 DEYTFSTMLSGIAGLSALTWG-MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
              TF ++L+  A    +  G M   S   + G++  I   ++L+D+  + GQ+E A  +
Sbjct: 355 TYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDL 414

Query: 325 FRSLC-RKNLVTWNAMI 340
             S+    +   W A++
Sbjct: 415 INSMPFEPDKAVWGALL 431


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 159/553 (28%), Positives = 289/553 (52%), Gaps = 41/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +VL   + A S LG+    +Q+H Y  +S   ++  V   L+  Y K + L+ A K+
Sbjct: 219 PDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKL 278

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   ++VSW ++ISGY+Q+    +A+ +F  + ++    D ++ TS L +CG L ++
Sbjct: 279 FDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAI 338

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH+ ++K  LE    + N LIDMY KC  + +A  VF  + + D IS+N++I   
Sbjct: 339 WQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGY 398

Query: 181 ARNGNLELAFGFLHRLP----NPDTISY---------------NEVINGI---------- 211
           ++N +L  A     R+      P  +++               ++ I+G+          
Sbjct: 399 SKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDL 458

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     ++   + DA  + + +   +   WNS++ G+    +  EA+ LF ++   
Sbjct: 459 YAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLS 518

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  +E+TF  +++  + L+++  G   H+ +IK G+D    V++AL+DMY+KCG ++  
Sbjct: 519 GMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEG 578

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F S C ++++ WN+MIT YA++G   + +++F +L    +++P+ VTF+ VL+AC+H
Sbjct: 579 RMLFESTCGEDVICWNSMITTYAQHGHAEEALQVF-RLMGEAEVEPNYVTFVGVLSACAH 637

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
                + ++ +F SM  +Y I+P +EH  S++ L G+ G++  A+  I  +       VW
Sbjct: 638 AGFVGEGLN-HFNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVW 696

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R+LLSA     + ++ R +A   +  +      YV+L N+Y S G W     +R  M   
Sbjct: 697 RSLLSACHLFGNAEIGRYAAEMALLADPTDSGPYVLLSNIYASKGLWADVHNLRQQMDSS 756

Query: 502 GLRKEAGCSWIEV 514
           G  KE GCSWIEV
Sbjct: 757 GTVKETGCSWIEV 769



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 130/511 (25%), Positives = 236/511 (46%), Gaps = 47/511 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE++L  +LRA +     +  +Q+H   +K    +NV+V TAL+  Y K+  + +A  +
Sbjct: 118 PNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLV 177

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P  + V+WN++I+GY Q G    AL LF  +    +  D +   SA++AC  LG L
Sbjct: 178 FHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFL 237

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH    + + E    + N LID+Y KC  +  A  +F  M  ++++SW ++I+  
Sbjct: 238 EGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGY 297

Query: 181 ARNG-NLELAFGFLHRLP---NPDTISYNEVINGIAQF---------------GDIE--- 218
            +N  N E    F +       PD  +   ++N                     D+E   
Sbjct: 298 MQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADE 357

Query: 219 -----------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                            +A  +  ++   ++ S+N+++ GY     + EA+++F  M+  
Sbjct: 358 YVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFF 417

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +     TF ++L   +   A+     IH  +IK G    +  ASAL+D+YSKC  V  A
Sbjct: 418 SLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDA 477

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            ++F  L  K++V WN+MI G+A+N    + I+LF QL  +  + P+  TF+ ++   S 
Sbjct: 478 KTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQL-LLSGMAPNEFTFVALVTVAST 536

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
               F    + F +     G+        ++I +  + G + +  RM+ E   G   + W
Sbjct: 537 LASMFH--GQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFI-KEGRMLFESTCGEDVICW 593

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSD 472
            ++++        +     A +V +L G+++
Sbjct: 594 NSMITTYAQHGHAE----EALQVFRLMGEAE 620



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 196/396 (49%), Gaps = 41/396 (10%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H     +G L ++F++  L+  Y  +  L DA  +F  +P  ++VSW S+IS Y Q G+
Sbjct: 40  IHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGR 99

Query: 85  YRKALNLFVELERSEI-YADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
              A++LFV  +++     + +   S L AC Q  ++ LG  +H   VK  L+  V +  
Sbjct: 100 DDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGT 159

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLEL----------- 188
            LI++Y K G +++A+ VF  +  +  ++WN+VI   A+ G     LEL           
Sbjct: 160 ALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRP 219

Query: 189 -------------AFGFLH-----------RLPNPDTISYNEVINGIAQFGDIEDAIMIL 224
                        A GFL                 DT   N +I+   +   +  A  + 
Sbjct: 220 DRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLF 279

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             M   N  SW ++++GY+  +   EA+ +F  M       D +  +++L+    L+A+ 
Sbjct: 280 DCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIW 339

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  IH+ VIK  L+A   V +AL+DMY+KC  +  A ++F +L   + +++NAMI GY+
Sbjct: 340 QGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYS 399

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +N DL + + +F++++    L+P  +TF+++L   S
Sbjct: 400 KNRDLAEAVNIFQRMRFF-SLRPSLLTFVSLLGVSS 434



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 130/299 (43%), Gaps = 41/299 (13%)

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +L  AIH++         + + N L+  Y   G + DA  +F  M  ++++SW SVI+  
Sbjct: 35  RLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMY 94

Query: 181 ARNGNLELAFGFL-------HRLPNP-------------DTISYNEVINGI--------- 211
            ++G  + A             +PN                +S  E ++GI         
Sbjct: 95  TQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDAN 154

Query: 212 -----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                      A+ G +++A+++  ++P     +WN+++TGY        AL LF  M  
Sbjct: 155 VYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGI 214

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           + V  D +  ++ +S  + L  L  G  IH    +   +    V + L+D+Y KC ++  
Sbjct: 215 EGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSA 274

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           A  +F  +  +NLV+W  MI+GY +N    + I +F  + T    QPD     ++L +C
Sbjct: 275 ARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNM-TQAGWQPDGFACTSILNSC 332



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%)

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           IH+     G    + + + LL  YS  G++  A  +F  +  +NLV+W ++I+ Y ++G 
Sbjct: 40  IHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGR 99

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
               I LF   +      P+     +VL AC+ +
Sbjct: 100 DDCAISLFVAFQKASCEVPNEFLLASVLRACTQS 133


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 161/536 (30%), Positives = 281/536 (52%), Gaps = 48/536 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            ++HC  LK GF+ +V+V+ +L+  Y +  ++ +A  +F E+P   + SWN++ISGY QS
Sbjct: 170 NKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQS 229

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G  ++AL L   L       D+ +  S L+AC + G    G+ IHS  +K+ LE  + ++
Sbjct: 230 GNAKEALTLSDGLRA----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVS 285

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
           N LID+Y + GS++D   VF  M  +D+ISWNS+I A   N     A      +      
Sbjct: 286 NKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQ 345

Query: 199 PDTISY------------------------------------NEVINGIAQFGDIEDAIM 222
           PD ++                                     N V+   A+ G ++ A  
Sbjct: 346 PDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARA 405

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK--DVPMDEYTFSTMLSGIAGL 280
           + + +P+ +  SWN+I++GY       EA+ ++  M+ +  ++  ++ T+ ++L   +  
Sbjct: 406 VFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQA 465

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
            AL  GM +H  ++K GL   + V ++L DMY KCG+++ A S+F  + R N V WN +I
Sbjct: 466 GALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLI 525

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
             +  +G   K + LF+++     ++PD +TF+ +L+ACSH+ +  D+    FE M  DY
Sbjct: 526 ACHGFHGHGEKAVMLFKEMLD-EGVKPDHITFVTLLSACSHSGL-VDEGEWCFEMMQTDY 583

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
           GI P+++H   M+ L G+ G++  A   I+ +       +W ALLSA     ++D+ +I+
Sbjct: 584 GITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIA 643

Query: 461 AAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +  + ++E +    +V+L N+Y S G W+    +R+    +GLRK  G S +EV+N
Sbjct: 644 SEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDN 699



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 190/395 (48%), Gaps = 41/395 (10%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           LH  ++ S  + NV +S  L+  Y  + ++A A   F  I    V +WN +ISGY ++G 
Sbjct: 73  LHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGY 132

Query: 85  YRKALNLF-VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
             + +  F + +  S +  D  +F S L AC  +     G  IH   +K+     V +A 
Sbjct: 133 SSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMWDVYVAA 189

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS 203
            LI +Y + G+V +A  +F EM  +D+ SWN++I+   ++GN + A      L   D+++
Sbjct: 190 SLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAMDSVT 249

Query: 204 Y-----------------------------------NEVINGIAQFGDIEDAIMILSSMP 228
                                               N++I+  A+FG ++D   +   M 
Sbjct: 250 VVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMY 309

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             +  SWNSI+  Y    +   A+ LF EM+   +  D  T  ++ S ++ L  +     
Sbjct: 310 VRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRS 369

Query: 289 IHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
           +    +++G     I + +A++ MY+K G V+ A ++F  L  K++++WN +I+GYA+NG
Sbjct: 370 VQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNG 429

Query: 348 DLTKVIELFEQLKTV-RDLQPDSVTFLNVLAACSH 381
             ++ IE++  ++    ++  +  T+++VL ACS 
Sbjct: 430 FASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQ 464



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 201/449 (44%), Gaps = 64/449 (14%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           LL A ++ G       +H Y +K G  S +FVS  L+  Y +  SL D  K+F  +    
Sbjct: 253 LLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRD 312

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           ++SWNS+I  Y  + +  +A+ LF E+  S I  D  +  S  +   QLG ++   ++  
Sbjct: 313 LISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQG 372

Query: 129 KIVKYSLERG-----VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
               ++L +G     + I N ++ MY K G V+ A  VF  + +KD+ISWN++I+  A+N
Sbjct: 373 ----FTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQN 428

Query: 184 GNLELAFGFLHRLPNP-DTISYNE--------------------------VINGI----- 211
           G    A    + +      IS N+                          + NG+     
Sbjct: 429 GFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVF 488

Query: 212 ---------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                     + G ++DA+ +   +P  NS  WN+++  +       +A+ LF EM  + 
Sbjct: 489 VGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEG 548

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCV-IKQGLDASIVVASALLDMYSKCGQVEIA 321
           V  D  TF T+LS  +    +  G      +    G+  S+     ++D+Y + GQ+EIA
Sbjct: 549 VKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIA 608

Query: 322 DSMFRSL-CRKNLVTWNAMITGYARNG--DLTKVI--ELFEQLKTVRDLQPDSVTFLNVL 376
            +  +S+  + +   W A+++    +G  DL K+    LFE       ++P+ V +  +L
Sbjct: 609 LNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFE-------VEPEHVGYHVLL 661

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPT 405
           +    +   ++ V E   S+T   G++ T
Sbjct: 662 SNMYASAGKWEGVDE-IRSITSGKGLRKT 689



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 2/190 (1%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N+     +L A S  G      +LH  +LK+G   +VFV T+L   Y K   L DA  +F
Sbjct: 451 NQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLF 510

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            +IP+ + V WN+LI+ +   G   KA+ LF E+    +  D  +F + L+AC   G + 
Sbjct: 511 YQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVD 570

Query: 122 LGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
            G      +   Y +   +    C++D+YG+ G +E A+     M +  D   W ++++A
Sbjct: 571 EGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSA 630

Query: 180 SARNGNLELA 189
              +GN++L 
Sbjct: 631 CRVHGNVDLG 640



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 8/160 (5%)

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           +H+ ++      ++ +++ L+++Y   G V +A   F  +  +++  WN MI+GY R G 
Sbjct: 73  LHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGY 132

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIPFDKVSEYFESMTKDYGIKPTVE 407
            ++VI  F        LQPD  TF +VL AC + TD            +   +G    V 
Sbjct: 133 SSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD------GNKIHCLALKFGFMWDVY 186

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
              S+I L  + G V  A+ +  E+     G  W A++S 
Sbjct: 187 VAASLIHLYCRYGAVVNARILFDEMPTRDMG-SWNAMISG 225


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 160/555 (28%), Positives = 285/555 (51%), Gaps = 41/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  Y   +LL+   D       +++H  ++KSGF  ++F  T L   Y K   + +A K+
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKV 192

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+  +VSWN++++GY Q+G  R AL +   +    +     +  S L A   L  +
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLI 252

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +G  IH   ++   +  V I+  L+DMY KCGS+E A  +F  M++++++SWNS+I A 
Sbjct: 253 SVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAY 312

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIE------------------ 218
            +N N + A     ++ +    P  +S    ++  A  GD+E                  
Sbjct: 313 VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNV 372

Query: 219 -----------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                             A  +   + S    SWN+++ G+    R  +AL+ F +M+S+
Sbjct: 373 SVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSR 432

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  D +T+ ++++ IA LS       IH  V++  LD ++ V +AL+DMY+KCG + IA
Sbjct: 433 TVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA 492

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  +++ TWNAMI GY  +G     +ELFE+++    ++P+ VTFL+V++ACSH
Sbjct: 493 RLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQK-GTIKPNGVTFLSVISACSH 551

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           + +  +   + F  M ++Y I+ +++H  +M+ L+G+ G +  A   I ++       V+
Sbjct: 552 SGL-VEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVY 610

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            A+L A     +++ A  +A  + +L  D    +V+L N+Y +   W+    +R  M  +
Sbjct: 611 GAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQ 670

Query: 502 GLRKEAGCSWIEVEN 516
           GLRK  GCS +E++N
Sbjct: 671 GLRKTPGCSMVEIKN 685



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 188/401 (46%), Gaps = 40/401 (9%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+   + K+G     F  T L+  + +  S+ +A ++F  I     V +++++ G+ + 
Sbjct: 54  RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKV 113

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
               KAL  FV +   ++    Y+FT  L  CG    L++G  IH  +VK      +   
Sbjct: 114 SDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAM 173

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PN 198
             L +MY KC  V +A  VF  M ++D++SWN+++A  ++NG   +A   +  +      
Sbjct: 174 TGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLK 233

Query: 199 PDTISYNEVINGI-----------------------------------AQFGDIEDAIMI 223
           P  I+   V+  +                                   A+ G +E A  +
Sbjct: 234 PSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQL 293

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              M   N  SWNS++  YV      EA+ +F +M  + V   + +    L   A L  L
Sbjct: 294 FDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDL 353

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH   ++ GLD ++ V ++L+ MY KC +V+ A SMF  L  + LV+WNAMI G+
Sbjct: 354 ERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGF 413

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
           A+NG     +  F Q+++ R ++PD+ T+++V+ A +   I
Sbjct: 414 AQNGRPIDALNYFSQMRS-RTVKPDTFTYVSVITAIAELSI 453


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 177/586 (30%), Positives = 301/586 (51%), Gaps = 75/586 (12%)

Query: 4   YVLFHLLRASSDLGWDTYC-QQLHCYILKSGFLS--NVFVSTALMGFYRKINSLADAHKM 60
           + L  +L A S L  D    ++ H + LK+GFL     F   AL+  Y ++  + DA  +
Sbjct: 161 FTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTL 220

Query: 61  F-----VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACG 115
           F      ++P   VV+WN+++S  VQSG+  +A+ +  ++    +  D  +F SAL AC 
Sbjct: 221 FGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACS 280

Query: 116 QLGSLQLGMAIHSKIVKYS-LERGVVIANCLIDMYGKCGSVEDAIGVFGEMI---DKDII 171
           QL  L LG  +H+ ++K + L     +A+ L+DMY     V  A  VF +M+   ++ + 
Sbjct: 281 QLEMLSLGREMHAYVLKDADLAANSFVASALVDMYASHERVGAARLVF-DMVPAGERQLG 339

Query: 172 SWNSVIAASARNGNLELAFGFLHRL-------PNPDTIS--------------------- 203
            WN++I   A+ G  E A     R+       P+  TI+                     
Sbjct: 340 LWNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGY 399

Query: 204 ------------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEA 251
                        N +++  A+ GD++ A  I +++   +  SWN+++TG V +  + +A
Sbjct: 400 VVKRGMADNPFVQNALMDLYARLGDMDAARWIFATIEPRDVVSWNTLITGCVVQGHIRDA 459

Query: 252 LHLFGEMQSK------------------DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
             L  EMQ +                   V  +  T  T+L G A L+A   G  IH   
Sbjct: 460 FQLVREMQQQGRFTDAATEDGIAGADEEPVVPNNITLMTLLPGCAMLAAPARGKEIHGYA 519

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
           ++  LD+ + V SAL+DMY+KCG + ++ ++F  L R+N++TWN +I  Y  +G   + I
Sbjct: 520 VRHALDSDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAI 579

Query: 354 ELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE-HCCSM 412
            LF+++    + +P+ VTF+  LAACSH+ +  D+  E F SM +++G++PT + H C+ 
Sbjct: 580 ALFDRMVASDEAKPNEVTFIAALAACSHSGM-VDRGLEMFRSMKRNHGVEPTPDLHACA- 637

Query: 413 IRLMGQKGEVWRAQRMIRELGFGSYGV-VWRALLSASGACSDLDVARISAAEVIKLEGDS 471
           + ++G+ G +  A R+I  +  G   V  W + L A     ++ +  I+A  + +LE D 
Sbjct: 638 VDILGRAGRLDEAYRIISSMEPGEQQVSAWSSFLGACRLHRNVALGEIAAERLFELEPDE 697

Query: 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
              YV+LCN+Y++ G W+ +S +R+ MR+RG+ KE GCSWIE++ V
Sbjct: 698 ASHYVLLCNIYSAAGLWEKSSEVRSRMRQRGVSKEPGCSWIELDGV 743



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 150/333 (45%), Gaps = 52/333 (15%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV--IANCLIDMYGKCGSVEDAIG 160
           D ++   A  +   L SL    +IH   +++ L  G    ++N L+  Y +CG +  A+ 
Sbjct: 56  DRFALPPAAKSAAALRSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAALA 115

Query: 161 VFGEMIDKDIISWNSVIAA----------------------------------------- 179
           +F  M  +D +++NS+IAA                                         
Sbjct: 116 LFDAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSHLAE 175

Query: 180 SARNGNLELAFGFLHRLPNPDT-ISYNEVINGIAQFGDIEDAIMILSS-----MPSPNSS 233
             R G    AF   +   + D   ++N +++  A+ G ++DA  +  S     +P     
Sbjct: 176 DLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGGGVV 235

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           +WN++++  V   R  EA+ +  +M ++ V  D  TF++ L   + L  L+ G  +H+ V
Sbjct: 236 TWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAYV 295

Query: 294 IKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDLT 350
           +K   L A+  VASAL+DMY+   +V  A  +F  +    + L  WNAMI GYA+ G   
Sbjct: 296 LKDADLAANSFVASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAMICGYAQAGLDE 355

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
             +ELF +++T   + P   T   VL +C+ ++
Sbjct: 356 DALELFARMETEAGVVPSETTIAGVLPSCARSE 388



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 6/210 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  LL   + L      +++H Y ++    S+V V +AL+  Y K   LA +  +
Sbjct: 491 PNNITLMTLLPGCAMLAAPARGKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSRAV 550

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS-EIYADAYSFTSALAACGQLGS 119
           F  +P+ +V++WN LI  Y   G   +A+ LF  +  S E   +  +F +ALAAC   G 
Sbjct: 551 FDRLPRRNVITWNVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGM 610

Query: 120 LQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI--DKDIISWNSV 176
           +  G+ +   + + + +E    +  C +D+ G+ G +++A  +   M   ++ + +W+S 
Sbjct: 611 VDRGLEMFRSMKRNHGVEPTPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSAWSSF 670

Query: 177 IAASARNGNLELAFGFLHRL--PNPDTISY 204
           + A   + N+ L      RL    PD  S+
Sbjct: 671 LGACRLHRNVALGEIAAERLFELEPDEASH 700



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 100/197 (50%), Gaps = 9/197 (4%)

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           L  P     N ++   A+ GD+  A+ +  +MPS ++ ++NS++       R   AL   
Sbjct: 89  LDGPTPAVSNALLTAYARCGDLTAALALFDAMPSRDAVTFNSLIAALCLFRRWLPALDAL 148

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSA-LTWGMLIHSCVIKQG-LDASIVVA-SALLDMY 312
            +M  +  P+  +T  ++L   + L+  L  G   H+  +K G LD     A +ALL MY
Sbjct: 149 RDMLLEGHPLTSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMY 208

Query: 313 SKCGQVEIADSMFRSLCRKN-----LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           ++ G V+ A ++F S+   +     +VTWN M++   ++G   + IE+   +   R ++P
Sbjct: 209 ARLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDM-VARGVRP 267

Query: 368 DSVTFLNVLAACSHTDI 384
           D VTF + L ACS  ++
Sbjct: 268 DGVTFASALPACSQLEM 284


>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g15300-like [Glycine max]
          Length = 555

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 156/512 (30%), Positives = 268/512 (52%), Gaps = 13/512 (2%)

Query: 23  QQLHCYILKSGFLSNV-----FVSTALMGFYRKINSLAD---AHKMFVEIPQPSVVSWNS 74
           +Q+H  ++ +GF SNV      V T  M       + A    A +MF +IPQP    WN+
Sbjct: 18  RQIHALMIVNGFTSNVGFLRKLVLTTAMSMVGPAATTAVTQYAVQMFAQIPQPDTFMWNT 77

Query: 75  LISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS 134
            I G  QS     A+ L+ ++    +  D ++F   L AC +L  +  G  +H ++ +  
Sbjct: 78  YIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTKLFWVNTGSVVHGRVFRLG 137

Query: 135 LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH 194
               VV+ N L+  + KCG ++ A  +F +    D+++W+++IA  A+ G+L +A     
Sbjct: 138 FGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFD 197

Query: 195 RLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
            +P  D +S+N +I    + G++E A  +    P  +  SWN+++ GYV  N   EAL L
Sbjct: 198 EMPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALEL 257

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA-SIVVASALLDMYS 313
           F EM       DE T  ++LS  A L     G  +H+ +++      S ++ +AL+DMY+
Sbjct: 258 FDEMCEVGECPDEVTMLSLLSACADLGDX--GEKVHAKIMELNKGKLSTLLGNALVDMYA 315

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           KCG +     +F  +  K++V+WN++I G A +G   + + LF +++  + + PD +TF+
Sbjct: 316 KCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTK-VCPDEITFV 374

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
            VLAACSHT    D+ + YF  M   Y I+P + HC  ++ ++ + G +  A   I  + 
Sbjct: 375 GVLAACSHTG-NVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFDFIASMK 433

Query: 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
                +VWR+LL A     D+++A+ +  +++++  D    YV+L N+Y SHG WD A  
Sbjct: 434 IEPNAIVWRSLLGACKVHGDVELAKRATEQLLRMRVDQSGDYVLLSNVYASHGEWDGAEN 493

Query: 494 MRNFMRERGLRKEAGCSWIEVENVAAHSSNIR 525
           +R  M + G+ K  G S++E   +  +  N R
Sbjct: 494 VRKLMDDNGVTKTRGSSFVEAYRIEPNPVNGR 525



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 113/487 (23%), Positives = 203/487 (41%), Gaps = 53/487 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    +L+A + L W      +H  + + GF SNV V   L+ F+ K   L  A+ +
Sbjct: 105 PDNFTFPLVLKACTKLFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDI 164

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +  +  VV+W++LI+GY Q G    A  LF E+ +     D  S+   + A  + G +
Sbjct: 165 FDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMPKR----DLVSWNVMITAYTKHGEM 220

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID----KDIISWNSV 176
           +       ++   +  + VV  N ++  Y      ++A+ +F EM +     D ++  S+
Sbjct: 221 ECA----RRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALELFDEMCEVGECPDEVTMLSL 276

Query: 177 IAASARNGN---------LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           ++A A  G+         +EL  G L       T+  N +++  A+ G+I   + +   +
Sbjct: 277 LSACADLGDXGEKVHAKIMELNKGKL------STLLGNALVDMYAKCGNIGKGVCVFWLI 330

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG- 286
              +  SWNS++ G        E+L LF EMQ   V  DE TF  +L+  +    +  G 
Sbjct: 331 RDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITFVGVLAACSHTGNVDEGN 390

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYAR 345
              +    K  ++ +I     ++DM ++ G ++ A     S+    N + W +++     
Sbjct: 391 RYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFDFIASMKIEPNAIVWRSLLGACKV 450

Query: 346 NGDLTKVIELFEQLKTVR-DLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           +GD+       EQL  +R D   D V   NV A+    D      +E    +  D G+  
Sbjct: 451 HGDVELAKRATEQLLRMRVDQSGDYVLLSNVYASHGEWD-----GAENVRKLMDDNGVTK 505

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
           T                  R    +         V  R LL A     D+++A+    E+
Sbjct: 506 T------------------RGSSFVEAYRIEPNPVNGRTLLGACIVYGDVELAKRVNEEL 547

Query: 465 IKLEGDS 471
           ++L  D 
Sbjct: 548 LRLRRDE 554


>gi|356519224|ref|XP_003528273.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Glycine max]
          Length = 805

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 160/501 (31%), Positives = 275/501 (54%), Gaps = 12/501 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q H   +  G   +  + +++M FY K+  + +A  +F  +    VV+WN +++GY Q 
Sbjct: 276 RQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQF 335

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   KAL +   +    +  D  + ++ LA       L LGM  H+  VK   E  VV++
Sbjct: 336 GMVEKALEMCCVMREEGLRFDCVTLSALLAVAADTRDLVLGMKAHAYCVKNDFEGDVVVS 395

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGF-LHRLP 197
           + +IDMY KCG ++ A  VF  +  KDI+ WN+++AA A  G     L+L F   L  +P
Sbjct: 396 SGIIDMYAKCGRMDCARRVFSCVRKKDIVLWNTMLAACAEQGLSGEALKLFFQMQLESVP 455

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PNSSSWNSILTGYVNRNRVPEALH 253
            P+ +S+N +I G  + G + +A  + + M S    PN  +W ++++G V       A+ 
Sbjct: 456 -PNVVSWNSLIFGFFKNGQVAEARNMFAEMCSSGVMPNLITWTTMMSGLVQNGFGSGAMM 514

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
           +F EMQ   +  +  + ++ LSG   ++ L  G  IH  V+++ L  SI + ++++DMY+
Sbjct: 515 VFREMQDVGIRPNSMSITSALSGCTSMALLKHGRAIHGYVMRRDLSQSIHIITSIMDMYA 574

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           KCG ++ A  +F+    K L  +NAMI+ YA +G   + + LF+Q++    + PD +T  
Sbjct: 575 KCGSLDGAKCVFKMCSTKELYVYNAMISAYASHGQAREALVLFKQMEK-EGIVPDHITLT 633

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
           +VL+ACSH  +  + + + F+ M  +  +KP+ EH   +++L+   G++  A R I  + 
Sbjct: 634 SVLSACSHGGLMKEGI-KVFKYMVSELQMKPSEEHYGCLVKLLANDGQLDEALRTILTMP 692

Query: 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
                 +  +LL+A G  +D+++A   A  ++KL+ D+   YV L N+Y + G WD  S 
Sbjct: 693 SHPDAHILGSLLTACGQNNDIELADYIAKWLLKLDPDNSGNYVALSNVYAAVGKWDKVSN 752

Query: 494 MRNFMRERGLRKEAGCSWIEV 514
           +R  M+E+GLRK  GCSWIEV
Sbjct: 753 LRGLMKEKGLRKIPGCSWIEV 773



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 146/561 (26%), Positives = 253/561 (45%), Gaps = 88/561 (15%)

Query: 24  QLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           QLH  ++K G  F  N FV + L+  Y K  +   A ++F + P P+V SW ++I  + +
Sbjct: 72  QLHADVIKRGPTFALNDFVISKLVILYAKCGASEPATRLFRDSPSPNVFSWAAIIGLHTR 131

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK-YSLERGVV 140
           +G   +AL  ++++++  +  D +   + L ACG L  ++ G  +H+ +VK   L+  V 
Sbjct: 132 TGFCEEALFGYIKMQQDGLPPDNFVLPNVLKACGVLKWVRFGKGVHAFVVKTIGLKECVY 191

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF---------- 190
           +A  L+DMYGKCG+VEDA  VF EM +++ ++WNS++   A+NG  + A           
Sbjct: 192 VATSLVDMYGKCGAVEDAGKVFDEMSERNDVTWNSMVVTYAQNGMNQEAIRVFREMRLQG 251

Query: 191 ---------GFLHRLPNPDTISYNEVINGIA--------------------QFGDIEDAI 221
                    GF     N + +      +G+A                    + G IE+A 
Sbjct: 252 VEVTLVALSGFFTACANSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAE 311

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           ++  +M   +  +WN ++ GY     V +AL +   M+ + +  D  T S +L+  A   
Sbjct: 312 VVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVMREEGLRFDCVTLSALLAVAADTR 371

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  GM  H+  +K   +  +VV+S ++DMY+KCG+++ A  +F  + +K++V WN M+ 
Sbjct: 372 DLVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVRKKDIVLWNTMLA 431

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
             A  G   + ++LF Q++ +  + P+ V++ N L      +    +    F  M    G
Sbjct: 432 ACAEQGLSGEALKLFFQMQ-LESVPPNVVSW-NSLIFGFFKNGQVAEARNMFAEMCSS-G 488

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIREL---------------------------GF 434
           + P +    +M+  + Q G    A  + RE+                           G 
Sbjct: 489 VMPNLITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITSALSGCTSMALLKHGR 548

Query: 435 GSYGVVWRALLSAS-----------GACSDLDVARISAAEVIKLEGDSD-YVYVMLCNLY 482
             +G V R  LS S             C  LD A+     V K+    + YVY  + + Y
Sbjct: 549 AIHGYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKC----VFKMCSTKELYVYNAMISAY 604

Query: 483 TSHGNWDVASVMRNFMRERGL 503
            SHG    A V+   M + G+
Sbjct: 605 ASHGQAREALVLFKQMEKEGI 625



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 201/398 (50%), Gaps = 28/398 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKS-GFLSNVFVSTALMGFYRKINSLADAHK 59
           P+ +VL ++L+A   L W  + + +H +++K+ G    V+V+T+L+  Y K  ++ DA K
Sbjct: 152 PDNFVLPNVLKACGVLKWVRFGKGVHAFVVKTIGLKECVYVATSLVDMYGKCGAVEDAGK 211

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F E+ + + V+WNS++  Y Q+G  ++A+ +F E+    +     + +    AC    +
Sbjct: 212 VFDEMSERNDVTWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGFFTACANSEA 271

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           +  G   H   V   LE   V+ + +++ Y K G +E+A  VF  M  KD+++WN V+A 
Sbjct: 272 VGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAG 331

Query: 180 SARNGNLELAFGFLHRLPNP----DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSW 235
            A+ G +E A      +       D ++ + +   +A   D  D ++ + +      + +
Sbjct: 332 YAQFGMVEKALEMCCVMREEGLRFDCVTLSAL---LAVAADTRDLVLGMKAHAYCVKNDF 388

Query: 236 -------NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA--GLSALTWG 286
                  + I+  Y    R+  A  +F  ++ KD+ +    ++TML+  A  GLS     
Sbjct: 389 EGDVVVSSGIIDMYAKCGRMDCARRVFSCVRKKDIVL----WNTMLAACAEQGLSGEALK 444

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR----KNLVTWNAMITG 342
           +     +  + +  ++V  ++L+  + K GQV  A +MF  +C      NL+TW  M++G
Sbjct: 445 LFFQMQL--ESVPPNVVSWNSLIFGFFKNGQVAEARNMFAEMCSSGVMPNLITWTTMMSG 502

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             +NG  +  + +F +++ V  ++P+S++  + L+ C+
Sbjct: 503 LVQNGFGSGAMMVFREMQDV-GIRPNSMSITSALSGCT 539



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 167/376 (44%), Gaps = 56/376 (14%)

Query: 54  LADAHKMFVEIP-QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALA 112
           LA +H      P Q S+  ++SL     + G+ R+A+N   ++    ++     + + L 
Sbjct: 4   LAPSHPPQTLTPNQFSLTHFSSL----CKHGRIREAVNSLTQMHSLNLHVGPAIYGTLLQ 59

Query: 113 ACGQLGSLQLGMAIHSKIVKYSLERGVVIA------NCLIDMYGKCGSVEDAIGVFGEMI 166
            C    +L L + +H+ ++K    RG   A      + L+ +Y KCG+ E A  +F +  
Sbjct: 60  GCVYERALPLALQLHADVIK----RGPTFALNDFVISKLVILYAKCGASEPATRLFRDSP 115

Query: 167 DKDIISWNSVIAASARNGNLELA-FGFLHR-----------LPN---------------- 198
             ++ SW ++I    R G  E A FG++             LPN                
Sbjct: 116 SPNVFSWAAIIGLHTRTGFCEEALFGYIKMQQDGLPPDNFVLPNVLKACGVLKWVRFGKG 175

Query: 199 -----PDTISYNE-------VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246
                  TI   E       +++   + G +EDA  +   M   N  +WNS++  Y    
Sbjct: 176 VHAFVVKTIGLKECVYVATSLVDMYGKCGAVEDAGKVFDEMSERNDVTWNSMVVTYAQNG 235

Query: 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
              EA+ +F EM+ + V +     S   +  A   A+  G   H   +  GL+   V+ S
Sbjct: 236 MNQEAIRVFREMRLQGVEVTLVALSGFFTACANSEAVGEGRQGHGLAVVGGLELDNVLGS 295

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
           ++++ Y K G +E A+ +FR++  K++VTWN ++ GYA+ G + K +E+   ++    L+
Sbjct: 296 SIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVMRE-EGLR 354

Query: 367 PDSVTFLNVLAACSHT 382
            D VT   +LA  + T
Sbjct: 355 FDCVTLSALLAVAADT 370



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 135/297 (45%), Gaps = 18/297 (6%)

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
           +PN  S     +      R+ EA++   +M S ++ +    + T+L G     AL   + 
Sbjct: 14  TPNQFSLTH-FSSLCKHGRIREAVNSLTQMHSLNLHVGPAIYGTLLQGCVYERALPLALQ 72

Query: 289 IHSCVIKQGLDASI--VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
           +H+ VIK+G   ++   V S L+ +Y+KCG  E A  +FR     N+ +W A+I  + R 
Sbjct: 73  LHADVIKRGPTFALNDFVISKLVILYAKCGASEPATRLFRDSPSPNVFSWAAIIGLHTRT 132

Query: 347 GDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACSHTD-IPFDKVSEYFESMTKDYGIKP 404
           G   +   LF  +K  +D L PD+    NVL AC     + F K    F  + K  G+K 
Sbjct: 133 GFCEEA--LFGYIKMQQDGLPPDNFVLPNVLKACGVLKWVRFGKGVHAF--VVKTIGLKE 188

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
            V    S++ + G+ G V  A ++  E+      V W +++  + A + ++   I     
Sbjct: 189 CVYVATSLVDMYGKCGAVEDAGKVFDEMS-ERNDVTWNSMV-VTYAQNGMNQEAIRVFRE 246

Query: 465 IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAHS 521
           ++L+G  +   V L   +T+  N +     R   +  GL    G   +E++NV   S
Sbjct: 247 MRLQG-VEVTLVALSGFFTACANSEAVGEGR---QGHGLAVVGG---LELDNVLGSS 296



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 91/191 (47%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +   L   + +    + + +H Y+++     ++ + T++M  Y K  SL  A  +
Sbjct: 526 PNSMSITSALSGCTSMALLKHGRAIHGYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCV 585

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F       +  +N++IS Y   G+ R+AL LF ++E+  I  D  + TS L+AC   G +
Sbjct: 586 FKMCSTKELYVYNAMISAYASHGQAREALVLFKQMEKEGIVPDHITLTSVLSACSHGGLM 645

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIA 178
           + G+ +   +V +  ++       CL+ +    G +++A+     M    D     S++ 
Sbjct: 646 KEGIKVFKYMVSELQMKPSEEHYGCLVKLLANDGQLDEALRTILTMPSHPDAHILGSLLT 705

Query: 179 ASARNGNLELA 189
           A  +N ++ELA
Sbjct: 706 ACGQNNDIELA 716


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 159/531 (29%), Positives = 270/531 (50%), Gaps = 42/531 (7%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLAD-AHKMFVEIPQPSVVSWNSLISGYVQS 82
           ++H  ++ +G   N+ +ST L+     +    D A KMF ++P+  V  WN+LI GY  +
Sbjct: 47  RIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADA 106

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   +AL L+  +  + ++ D Y+F   + +C  L +L+ G  +H  IVK+  +  V + 
Sbjct: 107 GPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQ 166

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------ 196
           + L+ MY + G       VFGEM+ ++I+SW +VIA   +N   +   G    +      
Sbjct: 167 SSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQ 226

Query: 197 PN---------------------------------PDTISYNEVINGIAQFGDIEDAIMI 223
           PN                                 PD    N +I    + G++E A  +
Sbjct: 227 PNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSL 286

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              M   N  SWN+++  Y   N    A+ LF  MQ++ V  D  T  +++S  A L AL
Sbjct: 287 FDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGAL 346

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H  V ++GL+ ++ + +AL+DMY+KCG +++A  +F  L  +++V+W +MI   
Sbjct: 347 NTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGAC 406

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A +G     ++LF ++K    ++P+S TF  V  AC H+ +  ++  ++FESM +DY I 
Sbjct: 407 ASHGHGEDALKLFSRMKD-EGVKPNSFTFAAVFTACRHSGL-VEEGRKHFESMMRDYSIM 464

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           P VEHC  M+ L+G+ G +  A   I ++       VW ALL +    S+L++A + A +
Sbjct: 465 PGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELAELVAEK 524

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           +  L+  +   YV++ N+Y   G W+ A+ +R  M ER L+K  G S +EV
Sbjct: 525 LFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHSLVEV 575



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 151/315 (47%), Gaps = 39/315 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    ++R+ + L      +++HC I+K GF S+VFV ++L+  Y +         +
Sbjct: 126 PDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELV 185

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+   ++VSW ++I+GYVQ+  +++ L +F E+  S    +A +  S L AC  L  L
Sbjct: 186 FGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFL 245

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IH   +K  ++  V + N LI +YGKCG+VE A  +F  M+ ++++SWN++IAA 
Sbjct: 246 NLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAY 305

Query: 181 ARNGNLELAFGFLHRLP----NPDTISY-------------------------------- 204
            +N     A     R+     + D I+                                 
Sbjct: 306 EQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINV 365

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+  A+ G+I+ A  +   +P  +  SW S++    +     +AL LF  M+ +
Sbjct: 366 SITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDE 425

Query: 262 DVPMDEYTFSTMLSG 276
            V  + +TF+ + + 
Sbjct: 426 GVKPNSFTFAAVFTA 440


>gi|356546772|ref|XP_003541796.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Glycine max]
          Length = 713

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 149/467 (31%), Positives = 272/467 (58%), Gaps = 9/467 (1%)

Query: 54  LADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALA 112
           +A A  +F  +P  +VVSW+++I GY+  G +++   LF++++R   +  ++ + T    
Sbjct: 215 VAAARDLFDRMPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFK 274

Query: 113 ACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS 172
           ACG  G +  GM IH  + +   E   V++N +I MY   G  + A  VF  + DKDI++
Sbjct: 275 ACGNCGRMSEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDMADKVFCTVSDKDIVT 334

Query: 173 WNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           WNS+I+    N  +E A+    R+P  D IS+  +I G ++ G +E+AI + + +P+ + 
Sbjct: 335 WNSLISGYIHNNEVEAAYRVFGRMPVKDVISWTAMIAGFSKSGRVENAIELFNMLPAKDD 394

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
             W +I++G+VN N   EALH +  M  +    +  T S++L+  A L AL  G+ IH+C
Sbjct: 395 FVWTAIISGFVNNNEYEEALHWYARMIWEGCKPNPLTISSVLAASAALVALNEGLQIHTC 454

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           ++K  L+ ++ + ++L+  YSK G V  A  +F  +   N++++N++I+G+A+NG   + 
Sbjct: 455 ILKMNLEYNLSIQNSLISFYSKSGNVVDAYRIFLDVIEPNVISYNSIISGFAQNGFGDEA 514

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412
           + +++++++    +P+ VTFL VL+AC+H  +  D+    F +M   YGI+P  +H   M
Sbjct: 515 LGIYKKMQS-EGHEPNHVTFLAVLSACTHAGL-VDEGWNIFNTMKSHYGIEPEADHYACM 572

Query: 413 IRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472
           + ++G+ G +  A  +IR + F  +  VW A+L AS     LD+A+++A  +  LE  + 
Sbjct: 573 VDILGRAGLLDEAIDLIRSMPFKPHSGVWGAILGASKTHLRLDLAKLAAQRITDLEPKNA 632

Query: 473 YVYVMLCNLYTSHG---NWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
             YV+L N+Y++ G   + D+  + +N    +G++K  GCSWI ++N
Sbjct: 633 TPYVVLSNMYSAAGKKIDGDLVKMAKNL---KGIKKSPGCSWITMKN 676



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 162/327 (49%), Gaps = 42/327 (12%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG-KYRKALNLFVEL-ERSE 99
           TA++  + +   + +A ++F E+PQ + VS N++IS Y+++G    KA  LF  L ER+ 
Sbjct: 76  TAMLTAFAQNGQIQNARRLFDEMPQRTTVSNNAMISAYIRNGCNVGKAYELFSVLAERNL 135

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159
           +     S+ + +    + G   +   ++ +   Y   R    +N LI+ Y K G V +A+
Sbjct: 136 V-----SYAAMIMGFVKAGKFHMAEKLYRE-TPYEF-RDPACSNALINGYLKMGEVNEAL 188

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIED 219
            +F  M ++D++SW++++    R+G +  A     R+P+ + +                 
Sbjct: 189 RIFENMGERDVVSWSAMVDGLCRDGRVAAARDLFDRMPDRNVV----------------- 231

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD-VPMDEYTFSTMLSGIA 278
                         SW++++ GY+      E   LF +M+ +  V ++  T + M     
Sbjct: 232 --------------SWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACG 277

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
               ++ GM IH  V + G +   V++++++ MYS  G  ++AD +F ++  K++VTWN+
Sbjct: 278 NCGRMSEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDMADKVFCTVSDKDIVTWNS 337

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDL 365
           +I+GY  N ++     +F ++  V+D+
Sbjct: 338 LISGYIHNNEVEAAYRVFGRM-PVKDV 363



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 179/447 (40%), Gaps = 90/447 (20%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N   +  + +A  + G  +   Q+H  + + GF  +  +S +++  Y  +     A K+F
Sbjct: 265 NSTTMTIMFKACGNCGRMSEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDMADKVF 324

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +    +V+WNSLISGY+ + +   A  +F  +       D  S+T+ +A         
Sbjct: 325 CTVSDKDIVTWNSLISGYIHNNEVEAAYRVFGRMP----VKDVISWTAMIAG-------- 372

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
                                      + K G VE+AI +F  +  KD   W ++I+   
Sbjct: 373 ---------------------------FSKSGRVENAIELFNMLPAKDDFVWTAIISGFV 405

Query: 182 RNGNLELAFGFLHRL------PNPDTISY------------------------------- 204
            N   E A  +  R+      PNP TIS                                
Sbjct: 406 NNNEYEEALHWYARMIWEGCKPNPLTISSVLAASAALVALNEGLQIHTCILKMNLEYNLS 465

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +I+  ++ G++ DA  I   +  PN  S+NSI++G+       EAL ++ +MQS+ 
Sbjct: 466 IQNSLISFYSKSGNVVDAYRIFLDVIEPNVISYNSIISGFAQNGFGDEALGIYKKMQSEG 525

Query: 263 VPMDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
              +  TF  +LS    AGL    W  + ++     G++      + ++D+  + G ++ 
Sbjct: 526 HEPNHVTFLAVLSACTHAGLVDEGWN-IFNTMKSHYGIEPEADHYACMVDILGRAGLLDE 584

Query: 321 ADSMFRSLCRK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL--- 376
           A  + RS+  K +   W A I G ++      + +L  Q   + DL+P + T   VL   
Sbjct: 585 AIDLIRSMPFKPHSGVWGA-ILGASKTHLRLDLAKLAAQ--RITDLEPKNATPYVVLSNM 641

Query: 377 --AACSHTDIPFDKVSEYFESMTKDYG 401
             AA    D    K+++  + + K  G
Sbjct: 642 YSAAGKKIDGDLVKMAKNLKGIKKSPG 668



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 102/193 (52%), Gaps = 7/193 (3%)

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           K +I  N+ IA + RNGN++ A    H++P  +T S+  ++   AQ G I++A  +   M
Sbjct: 39  KFLIQCNTQIAENGRNGNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDEM 98

Query: 228 PSPNSSSWNSILTGYV-NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           P   + S N++++ Y+ N   V +A  LF  +  +++     +++ M+ G          
Sbjct: 99  PQRTTVSNNAMISAYIRNGCNVGKAYELFSVLAERNL----VSYAAMIMGFVKAGKFHMA 154

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
             ++     +  D +   ++AL++ Y K G+V  A  +F ++  +++V+W+AM+ G  R+
Sbjct: 155 EKLYRETPYEFRDPA--CSNALINGYLKMGEVNEALRIFENMGERDVVSWSAMVDGLCRD 212

Query: 347 GDLTKVIELFEQL 359
           G +    +LF+++
Sbjct: 213 GRVAAARDLFDRM 225



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 118/244 (48%), Gaps = 7/244 (2%)

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN 198
           ++  N  I   G+ G+V++A  +F +M  K+  SW +++ A A+NG ++ A      +P 
Sbjct: 41  LIQCNTQIAENGRNGNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDEMPQ 100

Query: 199 PDTISYNEVINGIAQFG-DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
             T+S N +I+   + G ++  A  + S +   N  S+ +++ G+V   +   A  L+ E
Sbjct: 101 RTTVSNNAMISAYIRNGCNVGKAYELFSVLAERNLVSYAAMIMGFVKAGKFHMAEKLYRE 160

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
              +    D    + +++G   +  +   + I   + ++     +V  SA++D   + G+
Sbjct: 161 TPYE--FRDPACSNALINGYLKMGEVNEALRIFENMGER----DVVSWSAMVDGLCRDGR 214

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           V  A  +F  +  +N+V+W+AMI GY   G   +   LF  +K    ++ +S T   +  
Sbjct: 215 VAAARDLFDRMPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFK 274

Query: 378 ACSH 381
           AC +
Sbjct: 275 ACGN 278


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 163/556 (29%), Positives = 289/556 (51%), Gaps = 42/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  LL   ++        Q+H +++K G+ S + V  +L+  Y K  SL  A  +
Sbjct: 137 PDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHL 196

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +   V++N+L++GY + G    A+NLF +++        ++F + L A  Q+  +
Sbjct: 197 FKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDI 256

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +HS +VK +    V +AN L+D Y K   + +A  +F EM + D IS+N +I   
Sbjct: 257 EFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCC 316

Query: 181 ARNGNL--------ELAFGFLHRLPNP---------------------------DTISY- 204
           A NG +        EL F    R   P                           D IS  
Sbjct: 317 AWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEV 376

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +++  A+     +A  I + +   +S  W ++++GYV +    + L LF EM   
Sbjct: 377 LVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRA 436

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D  T++++L   A L++LT G  +HS +I+ G  +++   SAL+DMY+KCG ++ A
Sbjct: 437 KIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEA 496

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             MF+ +  +N V+WNA+I+ YA+NGD    +  FEQ+     LQP+SV+FL++L ACSH
Sbjct: 497 LQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQM-IHSGLQPNSVSFLSILCACSH 555

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  ++  +YF SMT+ Y ++P  EH  SM+ ++ + G    A++++  + F    ++W
Sbjct: 556 CGL-VEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMW 614

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYV-YVMLCNLYTSHGNWDVASVMRNFMRE 500
            ++L++     + ++A  +A ++  ++G  D   YV + N+Y + G WD    ++  +RE
Sbjct: 615 SSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRE 674

Query: 501 RGLRKEAGCSWIEVEN 516
           RG+RK    SW+E++ 
Sbjct: 675 RGIRKVPAYSWVEIKQ 690



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 207/456 (45%), Gaps = 43/456 (9%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV  +  ++  Y K  +L+ A  +F  + Q SVV+W  LI GY Q  ++ +A NLF ++ 
Sbjct: 72  NVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMC 131

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           R  +  D  +  + L+   +  S+     +H  +VK   +  +++ N L+D Y K  S+ 
Sbjct: 132 RHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLG 191

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIA 212
            A  +F  M +KD +++N+++   ++ G    A     ++ +    P   ++  V+    
Sbjct: 192 LACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGI 251

Query: 213 QFGDIE-----------------------------------DAIMILSSMPSPNSSSWNS 237
           Q  DIE                                   +A  +   MP  +  S+N 
Sbjct: 252 QMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNV 311

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           ++T      RV E+L LF E+Q       ++ F+T+LS  A    L  G  IHS  I   
Sbjct: 312 LITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTD 371

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
             + ++V ++L+DMY+KC +   A+ +F  L  ++ V W A+I+GY + G     ++LF 
Sbjct: 372 AISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFV 431

Query: 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417
           ++   + +  DS T+ ++L AC+  ++    + +   S     G    V    +++ +  
Sbjct: 432 EMHRAK-IGADSATYASILRACA--NLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYA 488

Query: 418 QKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD 453
           + G +  A +M +E+   +  V W AL+SA     D
Sbjct: 489 KCGSIKEALQMFQEMPVRN-SVSWNALISAYAQNGD 523



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 110/213 (51%), Gaps = 1/213 (0%)

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILS 225
            D +   +N  +    + G+L  A      +P+ + IS N +I G  + G++  A  +  
Sbjct: 38  FDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFD 97

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           SM   +  +W  ++ GY   NR  EA +LF +M    +  D  T +T+LSG     ++  
Sbjct: 98  SMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNE 157

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
              +H  V+K G D++++V ++LLD Y K   + +A  +F+ +  K+ VT+NA++TGY++
Sbjct: 158 VAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSK 217

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            G     I LF +++ +   +P   TF  VL A
Sbjct: 218 EGFNHDAINLFFKMQDL-GFRPSEFTFAAVLTA 249


>gi|359479080|ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial [Vitis vinifera]
          Length = 744

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 148/468 (31%), Positives = 258/468 (55%), Gaps = 3/468 (0%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYS 106
           Y K   +  A ++F  +P+ +VV+W ++I G+++ G Y     LF+ + +   +  +  +
Sbjct: 279 YCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTT 338

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
            T    AC + G  + G+ +H  + +   E  V + N +I MY +   V +A  +F  M 
Sbjct: 339 LTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMN 398

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
            KD++SWN++IA   +N  +E  +    +    D IS+  +I G +  G +  +I +   
Sbjct: 399 RKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRM 458

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           MP  +  +W ++++G+V      EA++ F EM  K V  +  T S++LS  AGL+ L  G
Sbjct: 459 MPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQG 518

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
           + IH+ V+K G++  + + ++L+ MY+KCG V     +F S+   N+V++N+MITG+A+N
Sbjct: 519 LQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQN 578

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           G   + +ELF ++      +P+ +TFL VL+AC+H  +  ++   YF+SM   Y I+P  
Sbjct: 579 GFGEEALELFHKMLN-EGQKPNEITFLGVLSACTHVGL-LEQGWNYFKSMKSLYQIEPGP 636

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
            H   ++ L+G+ G +  A  +IR +    +  VW ALL AS     LDVA+++A ++ K
Sbjct: 637 HHYACIVDLLGRAGFLDDAIDLIRSMPCEPHSGVWGALLGASRIHLRLDVAKLAAQQIFK 696

Query: 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           LE D+   Y +L  LY+S G    +  +R     +G++K AG SWI V
Sbjct: 697 LEPDNAAPYAVLSFLYSSAGRNRDSEQVRMAQGLKGVKKSAGYSWIIV 744



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 165/368 (44%), Gaps = 48/368 (13%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYR--KALNLFV 93
            N    TA++  Y +   +A A KMF ++PQ +  S+N++I+ Y +S      +A  LF 
Sbjct: 139 KNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLFA 198

Query: 94  EL-ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE-RGVVIANCLIDMYGK 151
           E+ ER+ I     S+ + +    + G +     ++   ++  +E R  V +N LI  Y K
Sbjct: 199 EMRERNSI-----SYAAMITGLARAGMVDNAEELY---LETPVEWRDPVCSNALISGYLK 250

Query: 152 CGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGI 211
            G +E+A  +F  M ++D+ISW+S++    + G +  A     R+P  + +++  +I+G 
Sbjct: 251 VGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGH 310

Query: 212 AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271
            + G  E    +   M             G+V  N                      T +
Sbjct: 311 MKMGCYEVGFGLFLRMRK----------EGFVKVNPT--------------------TLT 340

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
            M    +       G+ +H  V + G +  + + +A++ MY +   V  A  +F  + RK
Sbjct: 341 VMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRK 400

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE 391
           ++V+WNA+I GY +N ++ +   LFE+ +     Q D +++  ++   S+      K  E
Sbjct: 401 DVVSWNALIAGYVQNDEVEEGYVLFEKTQ-----QKDVISWTTMITGFSNKG-KMGKSIE 454

Query: 392 YFESMTKD 399
            F  M K 
Sbjct: 455 LFRMMPKQ 462



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 127/294 (43%), Gaps = 66/294 (22%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N   L  +  A S+ G      Q+H  + + GF  +VF+  A++  Y + + + +A K+F
Sbjct: 335 NPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIF 394

Query: 62  VEIPQPSVVSWNSLISGYVQS-------------------------------GKYRKALN 90
             + +  VVSWN+LI+GYVQ+                               GK  K++ 
Sbjct: 395 DMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIE 454

Query: 91  LF-------------------------------VELERSEIYADAYSFTSALAACGQLGS 119
           LF                               +E+ R  +  +  + +S L+A   L +
Sbjct: 455 LFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLAT 514

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L  G+ IH+ +VK  +E  + I N L+ MY KCG+V D   +F  +   +I+S+NS+I  
Sbjct: 515 LNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITG 574

Query: 180 SARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
            A+NG  E A    H++ N    P+ I++  V++     G +E       SM S
Sbjct: 575 FAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGWNYFKSMKS 628



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  +L AS+ L       Q+H  ++K G   ++ +  +L+  Y K  ++AD H++
Sbjct: 497 PNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQI 556

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I  P++VS+NS+I+G+ Q+G   +AL LF ++       +  +F   L+AC  +G L
Sbjct: 557 FTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLL 616

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G      +   Y +E G     C++D+ G+ G ++DAI +   M  +     W +++ 
Sbjct: 617 EQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLIRSMPCEPHSGVWGALLG 676

Query: 179 ASARNGNLELA 189
           AS  +  L++A
Sbjct: 677 ASRIHLRLDVA 687



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 103/199 (51%), Gaps = 8/199 (4%)

Query: 163 GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIM 222
           G    K ++  +S I    RNG+L+ A     R+P+ + IS+  ++    + G I  A  
Sbjct: 103 GNRTTKFLVHCHSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARK 162

Query: 223 ILSSMPSPNSSSWNSILTGYVNRN--RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
           +   MP   ++S+N+++T Y   N   + EA  LF EM+ +    +  +++ M++G+A  
Sbjct: 163 MFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLFAEMRER----NSISYAAMITGLARA 218

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
             +     ++     +  D   V ++AL+  Y K G++E A  +F  +  +++++W++M+
Sbjct: 219 GMVDNAEELYLETPVEWRDP--VCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMV 276

Query: 341 TGYARNGDLTKVIELFEQL 359
            GY + G +    ELFE++
Sbjct: 277 DGYCKKGKIGHARELFERM 295



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 115/238 (48%), Gaps = 10/238 (4%)

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYN 205
           I  +G+ G +++A  +F  M  K+ ISW +++ A   NG++  A     ++P   T SYN
Sbjct: 117 ITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYN 176

Query: 206 EVINGIAQFGD--IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
            +I    +     I +A  + + M   NS S+ +++TG      V  A  L+  +++   
Sbjct: 177 AMITAYTRSNPMMIGEASKLFAEMRERNSISYAAMITGLARAGMVDNAEELY--LETPVE 234

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA-SALLDMYSKCGQVEIAD 322
             D    + ++SG      L  G L  +  I +G+    V++ S+++D Y K G++  A 
Sbjct: 235 WRDPVCSNALISGY-----LKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHAR 289

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            +F  +  +N+VTW AMI G+ + G       LF +++    ++ +  T   +  ACS
Sbjct: 290 ELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACS 347


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 166/542 (30%), Positives = 267/542 (49%), Gaps = 77/542 (14%)

Query: 19  DTYCQQLHCYILKSG---------FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS- 68
           +  CQQ+HC ++KSG          L +VFV  A        + +A A K+F E+ +   
Sbjct: 166 EKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDE 225

Query: 69  ------------------------------VVSWNSLISGYVQSGKYRKALNLFVELERS 98
                                         VV+WN++ISGYV  G + +AL +F ++   
Sbjct: 226 LSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLL 285

Query: 99  EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY----SLERGVVIANCLIDMYGKCGS 154
            I  D +++TS L+AC   G    G  +H+ I++     SL+  + + N L  +Y KCG 
Sbjct: 286 GIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGK 345

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQF 214
           V++A  VF +M                               P  D +S+N +++G    
Sbjct: 346 VDEARQVFNQM-------------------------------PVKDLVSWNAILSGYVNA 374

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G I++A      MP  N  +W  +++G        E+L LF  M+S+     +Y F+  +
Sbjct: 375 GRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAI 434

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
              A L+AL  G  +H+ +++ G D+S+   +AL+ MY+KCG VE A  +F ++   + V
Sbjct: 435 IACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSV 494

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFE 394
           +WNAMI    ++G   + +ELFE L    D+ PD +TFL VL+ CSH  +  ++   YF+
Sbjct: 495 SWNAMIAALGQHGHGAQALELFE-LMLKEDILPDRITFLTVLSTCSHAGL-VEEGHRYFK 552

Query: 395 SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDL 454
           SM+  YGI P  +H   MI L+ + G+   A+ MI  +       +W ALL+      ++
Sbjct: 553 SMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNM 612

Query: 455 DVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           D+   +A  + +L    D  YV+L N+Y + G WD  + +R  MR++G++KE GCSWIEV
Sbjct: 613 DLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEV 672

Query: 515 EN 516
           EN
Sbjct: 673 EN 674



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 122/490 (24%), Positives = 214/490 (43%), Gaps = 96/490 (19%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVS----------- 71
           + +H +++ SGF    ++   L+  Y K + L  AH +F EI QP +V+           
Sbjct: 35  RTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSA 94

Query: 72  ----------------------WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
                                 +N++I+GY  +     A+ LF +L R+    D ++FTS
Sbjct: 95  GNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTS 154

Query: 110 ALAACGQL-GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS---------VEDAI 159
            L A   +    +    IH  +VK        + N L+ ++ KC S         +  A 
Sbjct: 155 VLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAAR 214

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIED 219
            +F EM ++D +SW ++IA   RN                               G+++ 
Sbjct: 215 KLFDEMTERDELSWTTMIAGYVRN-------------------------------GELDA 243

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
           A   L  M      +WN++++GYV+     EAL +F +M    +  DE+T++++LS  A 
Sbjct: 244 ARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACAN 303

Query: 280 LSALTWGMLIHSCVIKQ----GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335
                 G  +H+ +++      LD S+ V +AL  +Y KCG+V+ A  +F  +  K+LV+
Sbjct: 304 AGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVS 363

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP------FDKV 389
           WNA+++GY   G + +    FE++   R+L    +T+  +++  +           F+++
Sbjct: 364 WNAILSGYVNAGRIDEAKSFFEEMPE-RNL----LTWTVMISGLAQNGFGEESLKLFNRM 418

Query: 390 -SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSAS 448
            SE FE    DY     +  C  +  LM   G    AQ ++R LGF S      AL++  
Sbjct: 419 KSEGFEPC--DYAFAGAIIACAWLAALM--HGRQLHAQ-LVR-LGFDSSLSAGNALITMY 472

Query: 449 GACSDLDVAR 458
             C  ++ A 
Sbjct: 473 AKCGVVEAAH 482



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 153/357 (42%), Gaps = 62/357 (17%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKS----GFLSNVFVSTALMGFYRKINSLADA 57
           +E+    +L A ++ G+  + +Q+H YIL++        ++ V+ AL   Y K   + +A
Sbjct: 290 DEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEA 349

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE--------------------- 96
            ++F ++P   +VSWN+++SGYV +G+  +A + F E+                      
Sbjct: 350 RQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGE 409

Query: 97  ---------RSEIYADA-YSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
                    +SE +    Y+F  A+ AC  L +L  G  +H+++V+   +  +   N LI
Sbjct: 410 ESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALI 469

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPNPDTI 202
            MY KCG VE A  +F  M   D +SWN++IAA  ++G+    LEL    L     PD I
Sbjct: 470 TMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRI 529

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPS-----PNSSSWNSILTGYVNRNRVPEALHLFGE 257
           ++  V++  +  G +E+      SM       P    +  ++       +  EA  +   
Sbjct: 530 TFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIET 589

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           M  +  P                    W  L+  C I   +D  I  A  L ++  +
Sbjct: 590 MPVEPGPP------------------IWEALLAGCRIHGNMDLGIQAAERLFELMPQ 628



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 122/307 (39%), Gaps = 75/307 (24%)

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           S  +   +H+ ++    +    I N LID+Y K   +  A  +F E+   DI++  ++IA
Sbjct: 30  SYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIA 89

Query: 179 A--SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
           A  SA N NL     F   L   DT+ YN +I                            
Sbjct: 90  AHSSAGNSNLAREIFFATPLGIRDTVCYNAMI---------------------------- 121

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL-SALTWGMLIHSCVIK 295
              TGY + N    A+ LF ++       D +TF+++L  +A +         IH  V+K
Sbjct: 122 ---TGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVK 178

Query: 296 QGLDASIVVASALLDMYSKC---------------------------------------- 315
            G      V +ALL ++ KC                                        
Sbjct: 179 SGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRN 238

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G+++ A      +  K +V WNAMI+GY  +G   + +E+F ++  +  +Q D  T+ +V
Sbjct: 239 GELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLL-GIQWDEFTYTSV 297

Query: 376 LAACSHT 382
           L+AC++ 
Sbjct: 298 LSACANA 304



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 2/198 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P +Y     + A + L    + +QLH  +++ GF S++    AL+  Y K   +  AH +
Sbjct: 425 PCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCL 484

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F+ +P    VSWN++I+   Q G   +AL LF  + + +I  D  +F + L+ C   G +
Sbjct: 485 FLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLV 544

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G      +   Y +  G      +ID+  + G   +A  +   M ++     W +++A
Sbjct: 545 EEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLA 604

Query: 179 ASARNGNLELAFGFLHRL 196
               +GN++L      RL
Sbjct: 605 GCRIHGNMDLGIQAAERL 622


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 162/552 (29%), Positives = 276/552 (50%), Gaps = 43/552 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           ++ V    L+A ++L      +++HC ++K     NV V T L+  Y K   +  AHK+F
Sbjct: 141 DDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNV-VLTGLLDMYAKCGEIKSAHKVF 199

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            +I   +VV W S+I+GYV++    + L LF  +  + +  + Y++ + + AC +L +L 
Sbjct: 200 NDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALH 259

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G   H  +VK  +E    +   L+DMY KCG + +A  VF E    D++ W ++I    
Sbjct: 260 QGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYT 319

Query: 182 RNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIE------------------- 218
            NG++  A     ++      P+ ++   V++G     ++E                   
Sbjct: 320 HNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNV 379

Query: 219 ---------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
                          DA  +       +  +WNSI++G+     + EAL LF  M S+ V
Sbjct: 380 ANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESV 439

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL--DASIVVASALLDMYSKCGQVEIA 321
             +  T +++ S  A L +L  G  +H+  +K G    +S+ V +ALLD Y+KCG  + A
Sbjct: 440 TPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSA 499

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F ++  KN +TW+AMI GY + GD    +ELFE++   +  +P+  TF ++L+AC H
Sbjct: 500 RLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLK-KQQKPNESTFTSILSACGH 558

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           T +  ++  +YF SM KDY   P+ +H   M+ ++ + GE+ +A  +I ++        +
Sbjct: 559 TGM-VNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCF 617

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            A L   G  S  D+  I   +++ L  D    YV++ NLY S G W+ A  +RN M++R
Sbjct: 618 GAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQR 677

Query: 502 GLRKEAGCSWIE 513
           GL K AG S +E
Sbjct: 678 GLSKIAGHSTME 689



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 191/398 (47%), Gaps = 44/398 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q H  +  +G + ++ ++T L+  Y       DA  +F +IP+P    W  ++  Y  +
Sbjct: 61  RQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLN 120

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            +  + + L+  L +     D   F+ AL AC +L  L  G  IH ++VK      VV+ 
Sbjct: 121 KESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVLT 180

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
             L+DMY KCG ++ A  VF ++  ++++ W S+IA   +N   E      +R+   + +
Sbjct: 181 G-LLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVL 239

Query: 203 ----SYNEVI---------------------NGI--------------AQFGDIEDAIMI 223
               +Y  +I                     +GI               + GDI +A  +
Sbjct: 240 GNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRV 299

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
            +     +   W +++ GY +   V EAL LF +M+  ++  +  T +++LSG   +  L
Sbjct: 300 FNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENL 359

Query: 284 TWGMLIHSCVIKQGL-DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
             G  +H   IK G+ D +  VA+AL+ MY+KC Q   A  +F     K++V WN++I+G
Sbjct: 360 ELGRSVHGLSIKVGIWDTN--VANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISG 417

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +++NG + + + LF ++ +   + P+ VT  ++ +AC+
Sbjct: 418 FSQNGSIHEALFLFHRMNS-ESVTPNGVTVASLFSACA 454



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 105/217 (48%), Gaps = 6/217 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL--SNVFVSTALMGFYRKINSLADAH 58
           PN   +  L  A + LG       LH Y +K GFL  S+V V TAL+ FY K      A 
Sbjct: 441 PNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSAR 500

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
            +F  I + + ++W+++I GY + G    +L LF E+ + +   +  +FTS L+ACG  G
Sbjct: 501 LIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTG 560

Query: 119 SLQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSV 176
            +  G    S + K Y+         C++DM  + G +E A+ +  +M I  D+  + + 
Sbjct: 561 MVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAF 620

Query: 177 IAASARNGNLELAFGFLHRLPN--PDTISYNEVINGI 211
           +     +   +L    + ++ +  PD  SY  +++ +
Sbjct: 621 LHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNL 657



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 108/232 (46%), Gaps = 5/232 (2%)

Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
           FG  +DA ++   +P P+   W  +L  Y       E + L+  +       D+  FS  
Sbjct: 89  FGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKA 148

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           L     L  L  G  IH C + +      VV + LLDMY+KCG+++ A  +F  +  +N+
Sbjct: 149 LKACTELQDLDNGKKIH-CQLVKVPSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNV 207

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393
           V W +MI GY +N    + + LF +++   ++  +  T+  ++ AC  T +      ++F
Sbjct: 208 VCWTSMIAGYVKNDLCEEGLVLFNRMRE-NNVLGNEYTYGTLIMAC--TKLSALHQGKWF 264

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
                  GI+ +     S++ +  + G++  A+R+  E       V+W A++
Sbjct: 265 HGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDL-VMWTAMI 315


>gi|297796453|ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311946|gb|EFH42370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 158/530 (29%), Positives = 286/530 (53%), Gaps = 13/530 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +   L AS+++G     +Q H   + +G   +  + T+L+ FY K+  +  A  +
Sbjct: 272 PTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMV 331

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VV+WN +ISGYVQ G    A+ +   +   ++  D  +  + ++A  +  +L
Sbjct: 332 FDRMIDKDVVTWNLIISGYVQQGLVENAIYMCQLMRLEKLKYDCVTLATLMSAAARTQNL 391

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +    +++S E  +V+A+ ++DMY KCGS+ DA  VF    +KD+I WN+++AA 
Sbjct: 392 KLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTAEKDLILWNTLLAAY 451

Query: 181 ARNG----NLELAFGF-LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PN 231
           A +G     L L +G  L  +P P+ I++N +I  + + G++++A  +   M S    PN
Sbjct: 452 AESGLSGEGLRLFYGMQLEGVP-PNVITWNLIILSLLRNGEVDEAKDMFLQMQSSGIFPN 510

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SW +++ G V      EA+    +MQ   +  +  + +  LS  A L++L +G  IH 
Sbjct: 511 LISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAVSITVALSACANLASLHFGRSIHG 570

Query: 292 CVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
            +I+     +S+ + ++L+DMY+KCG +  A+ +F S     L  +NAMI+ YA  G+L 
Sbjct: 571 YIIRNLQHSSSVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLYNAMISAYALYGNLK 630

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + I L+  L+ V  L+PD++T  NVL+AC+H     ++ +E    M   +G+ P +EH  
Sbjct: 631 EAIALYRSLEGV-GLKPDNITITNVLSACNHAG-DNNQATEIVTEMVSKHGMNPCLEHYG 688

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            M+ L+   G+  +A R+I E+ +     + ++L+++       ++    + ++I+ E D
Sbjct: 689 LMVDLLASAGQTDKALRLIEEMPYKPDARMIQSLVASCNKQPKSELVDYLSRQLIESEPD 748

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAH 520
           +   YV + N Y   G+WD    MR  M+ +GL+K+ GCSWI+++    H
Sbjct: 749 NSGNYVTISNAYAVEGSWDEVVKMREIMKAKGLKKKPGCSWIQIKGEGVH 798



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 133/481 (27%), Positives = 231/481 (48%), Gaps = 49/481 (10%)

Query: 23  QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H  ILK+G  +  N ++ T L+ FY K ++L  A  +F ++   +V SW ++I    
Sbjct: 90  KQIHARILKNGDFYAKNEYIETKLVIFYAKCDALDIAEVLFTKLRVRNVFSWAAIIGVKC 149

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + G    AL  FVE+  +EI+ D +   +   ACG L   + G  +H  +VK  LE  V 
Sbjct: 150 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVF 209

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
           +A+ L DMYGKCG ++DA  VF E+ ++++++WN+++    +NG  E A      +    
Sbjct: 210 VASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEG 269

Query: 197 --PNPDTISYN-------------------EVINGI--------------AQFGDIEDAI 221
             P   T+S                      ++NG+               + G IE A 
Sbjct: 270 VEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAE 329

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           M+   M   +  +WN I++GYV +  V  A+++   M+ + +  D  T +T++S  A   
Sbjct: 330 MVFDRMIDKDVVTWNLIISGYVQQGLVENAIYMCQLMRLEKLKYDCVTLATLMSAAARTQ 389

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  +    I+   ++ IV+AS ++DMY+KCG +  A  +F S   K+L+ WN ++ 
Sbjct: 390 NLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTAEKDLILWNTLLA 449

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTF-LNVLAACSHTDIPFDKVSEYFESMTKDY 400
            YA +G   + + LF  ++ +  + P+ +T+ L +L+   + ++  D+  + F  M +  
Sbjct: 450 AYAESGLSGEGLRLFYGMQ-LEGVPPNVITWNLIILSLLRNGEV--DEAKDMFLQM-QSS 505

Query: 401 GIKPTVEHCCSMIRLMGQKG---EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
           GI P +    +M+  M Q G   E     R ++E G     V     LSA    + L   
Sbjct: 506 GIFPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAVSITVALSACANLASLHFG 565

Query: 458 R 458
           R
Sbjct: 566 R 566



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/425 (25%), Positives = 194/425 (45%), Gaps = 81/425 (19%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +V+ ++ +A   L W  + + +H Y++K+G    VFV+++L   Y K   L DA K+
Sbjct: 171 PDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKV 230

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EIP+ +VV+WN+L+ GYVQ+G   +A+ LF ++ +  +     + ++ L+A   +G +
Sbjct: 231 FDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMGGV 290

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI--- 177
           + G   H+  +   LE   ++   L++ Y K G +E A  VF  MIDKD+++WN +I   
Sbjct: 291 EEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMIDKDVVTWNLIISGY 350

Query: 178 --------------------------------AASARNGNLELA-----FGFLHRLPNPD 200
                                           +A+AR  NL+L      +   H   + D
Sbjct: 351 VQQGLVENAIYMCQLMRLEKLKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHSFES-D 409

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +  + V++  A+ G I DA  +  S    +   WN++L  Y       E L LF  MQ 
Sbjct: 410 IVLASTVMDMYAKCGSIVDAKKVFDSTAEKDLILWNTLLAAYAESGLSGEGLRLFYGMQL 469

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           + VP +                +TW ++I S +                    + G+V+ 
Sbjct: 470 EGVPPN---------------VITWNLIILSLL--------------------RNGEVDE 494

Query: 321 ADSMFRSLCR----KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           A  MF  +       NL++W  M+ G  +NG   + I    +++    L+P++V+    L
Sbjct: 495 AKDMFLQMQSSGIFPNLISWTTMMNGMVQNGCSEEAILFLRKMQE-SGLRPNAVSITVAL 553

Query: 377 AACSH 381
           +AC++
Sbjct: 554 SACAN 558



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 22/227 (9%)

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
           +P+S+S+   ++       + EAL L  EM  +++ +    +  +L G      L  G  
Sbjct: 32  NPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLCTGKQ 91

Query: 289 IHSCVIKQG--LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR- 345
           IH+ ++K G     +  + + L+  Y+KC  ++IA+ +F  L  +N+ +W A+I    R 
Sbjct: 92  IHARILKNGDFYAKNEYIETKLVIFYAKCDALDIAEVLFTKLRVRNVFSWAAIIGVKCRI 151

Query: 346 ---NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
               G L   +E+ E      ++ PD+    NV  AC             F      Y +
Sbjct: 152 GLCEGALMGFVEMLEN-----EIFPDNFVVPNVCKACGALQW------SRFGRGVHGYVV 200

Query: 403 KPTVEHCC----SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
           K  +E C     S+  + G+ G +  A+++  E+   +  V W AL+
Sbjct: 201 KAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV-VAWNALM 246


>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 148/468 (31%), Positives = 258/468 (55%), Gaps = 3/468 (0%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYS 106
           Y K   +  A ++F  +P+ +VV+W ++I G+++ G Y     LF+ + +   +  +  +
Sbjct: 200 YCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTT 259

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
            T    AC + G  + G+ +H  + +   E  V + N +I MY +   V +A  +F  M 
Sbjct: 260 LTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMN 319

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
            KD++SWN++IA   +N  +E  +    +    D IS+  +I G +  G +  +I +   
Sbjct: 320 RKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRM 379

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           MP  +  +W ++++G+V      EA++ F EM  K V  +  T S++LS  AGL+ L  G
Sbjct: 380 MPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQG 439

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
           + IH+ V+K G++  + + ++L+ MY+KCG V     +F S+   N+V++N+MITG+A+N
Sbjct: 440 LQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQN 499

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           G   + +ELF ++      +P+ +TFL VL+AC+H  +  ++   YF+SM   Y I+P  
Sbjct: 500 GFGEEALELFHKMLN-EGQKPNEITFLGVLSACTHVGL-LEQGWNYFKSMKSLYQIEPGP 557

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
            H   ++ L+G+ G +  A  +IR +    +  VW ALL AS     LDVA+++A ++ K
Sbjct: 558 HHYACIVDLLGRAGFLDDAIDLIRSMPCEPHSGVWGALLGASRIHLRLDVAKLAAQQIFK 617

Query: 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           LE D+   Y +L  LY+S G    +  +R     +G++K AG SWI V
Sbjct: 618 LEPDNAAPYAVLSFLYSSAGRNRDSEQVRMAQGLKGVKKSAGYSWIIV 665



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 164/362 (45%), Gaps = 48/362 (13%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYR--KALNLFVEL-ERS 98
           TA++  Y +   +A A KMF ++PQ +  S+N++I+ Y +S      +A  LF E+ ER+
Sbjct: 66  TAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLFAEMRERN 125

Query: 99  EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE-RGVVIANCLIDMYGKCGSVED 157
            I     S+ + +    + G +     ++   ++  +E R  V +N LI  Y K G +E+
Sbjct: 126 SI-----SYAAMITGLARAGMVDNAEELY---LETPVEWRDPVCSNALISGYLKVGRLEE 177

Query: 158 AIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDI 217
           A  +F  M ++D+ISW+S++    + G +  A     R+P  + +++  +I+G  + G  
Sbjct: 178 ATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCY 237

Query: 218 EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277
           E    +   M             G+V  N                      T + M    
Sbjct: 238 EVGFGLFLRMRK----------EGFVKVNPT--------------------TLTVMFEAC 267

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
           +       G+ +H  V + G +  + + +A++ MY +   V  A  +F  + RK++V+WN
Sbjct: 268 SEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWN 327

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397
           A+I GY +N ++ +   LFE+ +     Q D +++  ++   S+      K  E F  M 
Sbjct: 328 ALIAGYVQNDEVEEGYVLFEKTQ-----QKDVISWTTMITGFSNKG-KMGKSIELFRMMP 381

Query: 398 KD 399
           K 
Sbjct: 382 KQ 383



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 127/294 (43%), Gaps = 66/294 (22%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N   L  +  A S+ G      Q+H  + + GF  +VF+  A++  Y + + + +A K+F
Sbjct: 256 NPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIF 315

Query: 62  VEIPQPSVVSWNSLISGYVQS-------------------------------GKYRKALN 90
             + +  VVSWN+LI+GYVQ+                               GK  K++ 
Sbjct: 316 DMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIE 375

Query: 91  LF-------------------------------VELERSEIYADAYSFTSALAACGQLGS 119
           LF                               +E+ R  +  +  + +S L+A   L +
Sbjct: 376 LFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLAT 435

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L  G+ IH+ +VK  +E  + I N L+ MY KCG+V D   +F  +   +I+S+NS+I  
Sbjct: 436 LNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITG 495

Query: 180 SARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
            A+NG  E A    H++ N    P+ I++  V++     G +E       SM S
Sbjct: 496 FAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGWNYFKSMKS 549



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  +L AS+ L       Q+H  ++K G   ++ +  +L+  Y K  ++AD H++
Sbjct: 418 PNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQI 477

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I  P++VS+NS+I+G+ Q+G   +AL LF ++       +  +F   L+AC  +G L
Sbjct: 478 FTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLL 537

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G      +   Y +E G     C++D+ G+ G ++DAI +   M  +     W +++ 
Sbjct: 538 EQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLIRSMPCEPHSGVWGALLG 597

Query: 179 ASARNGNLELA 189
           AS  +  L++A
Sbjct: 598 ASRIHLRLDVA 608



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 103/199 (51%), Gaps = 8/199 (4%)

Query: 163 GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIM 222
           G    K ++  +S I    RNG+L+ A     R+P+ + IS+  ++    + G I  A  
Sbjct: 24  GNRTTKFLVHCHSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARK 83

Query: 223 ILSSMPSPNSSSWNSILTGYVNRN--RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
           +   MP   ++S+N+++T Y   N   + EA  LF EM+ +    +  +++ M++G+A  
Sbjct: 84  MFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLFAEMRER----NSISYAAMITGLARA 139

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
             +     ++     +  D   V ++AL+  Y K G++E A  +F  +  +++++W++M+
Sbjct: 140 GMVDNAEELYLETPVEWRDP--VCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMV 197

Query: 341 TGYARNGDLTKVIELFEQL 359
            GY + G +    ELFE++
Sbjct: 198 DGYCKKGKIGHARELFERM 216



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 115/238 (48%), Gaps = 10/238 (4%)

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYN 205
           I  +G+ G +++A  +F  M  K+ ISW +++ A   NG++  A     ++P   T SYN
Sbjct: 38  ITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYN 97

Query: 206 EVINGIAQFGD--IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
            +I    +     I +A  + + M   NS S+ +++TG      V  A  L+  +++   
Sbjct: 98  AMITAYTRSNPMMIGEASKLFAEMRERNSISYAAMITGLARAGMVDNAEELY--LETPVE 155

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA-SALLDMYSKCGQVEIAD 322
             D    + ++SG      L  G L  +  I +G+    V++ S+++D Y K G++  A 
Sbjct: 156 WRDPVCSNALISGY-----LKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHAR 210

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            +F  +  +N+VTW AMI G+ + G       LF +++    ++ +  T   +  ACS
Sbjct: 211 ELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACS 268


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 154/554 (27%), Positives = 276/554 (49%), Gaps = 50/554 (9%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           +LRAS+         QLH  +LK GF S+  +   L+  Y K   L  A ++F  +P+ +
Sbjct: 10  MLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMPERN 69

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELER-SEIYADAYSFTSALAACGQLGSLQLGMAIH 127
           VVSW +L+ G+++ G  R+ L L   +   S++  + ++ +++L ACG +G +  G+ IH
Sbjct: 70  VVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGVWIH 129

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
              V+   E   V+AN L+ +Y K G + DA  VF   + +++++WN++I+  A  G+  
Sbjct: 130 GACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGR 189

Query: 188 ---LAFGFLHRLPN------PDTISYNEVINGIAQFGDIED------------------- 219
              L F  + +         PD  ++  ++      G   +                   
Sbjct: 190 DSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNA 249

Query: 220 -------------------AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                              A+ + + +   N+  W +++ G+    +V EA+ LFG   S
Sbjct: 250 ILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWS 309

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             V  D +  S+++   A  + +  G  +H   +K      + VA++L+DMY KCG  + 
Sbjct: 310 SGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDE 369

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A   FR +  +N+V+W AMI G  ++G   + I +FE+++    ++PD V +L +L+ACS
Sbjct: 370 AARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRA-EGVEPDEVAYLALLSACS 428

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H+ +  ++   YF ++  D  ++P  EH   M+ L+G+ GE+  A+ ++  +       V
Sbjct: 429 HSGL-VEECRRYFSAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVGV 487

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W+ LLSA     ++ V R +   ++ ++GD+   YVML N++   G+W     +R  MR 
Sbjct: 488 WQTLLSACRVHKNVTVGREAGETLLAIDGDNPVNYVMLSNIFAEAGDWRECQRVRGAMRR 547

Query: 501 RGLRKEAGCSWIEV 514
           RGLRK+ GCSW+EV
Sbjct: 548 RGLRKQGGCSWVEV 561



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 114/234 (48%), Gaps = 7/234 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGF--LSNVFVSTALMGFYRKINSLAD-A 57
           P+E+    LL+A   LG      Q+H  ++  G    SN  ++ AL+  Y K   L   A
Sbjct: 210 PDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMA 269

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
            ++F  + Q + + W ++I G+ Q G+ ++A+ LF     S + AD +  +S +      
Sbjct: 270 MQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSSVVGVFADF 329

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
             ++ G  +H   VK      V +AN LIDMY KCG  ++A   F E+  ++++SW ++I
Sbjct: 330 ALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPARNVVSWTAMI 389

Query: 178 AASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSM 227
               ++G+ + A      +      PD ++Y  +++  +  G +E+     S++
Sbjct: 390 NGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEECRRYFSAI 443


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 156/505 (30%), Positives = 275/505 (54%), Gaps = 12/505 (2%)

Query: 24  QLHCYILKSGFLSNVFV-STALMGF--YRKINSLADAHKMF--VEIPQPSVVSWNSLISG 78
           QLH  ++K+  +   +     L+ F  +  + SL  A K+F  V+IP+ S + + ++I  
Sbjct: 49  QLHTLLIKTSLIKEKYAFGRLLLSFASFDNLGSLNYAQKLFDTVDIPRNSFM-YTTMIKA 107

Query: 79  YVQSGKYRKALNLFVEL--ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE 136
           Y   G  R+A   +  +  ++  +Y + ++FT   +AC +   +  G   H++++K+  E
Sbjct: 108 YANFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFE 167

Query: 137 RGVVIANCLIDMYGKCGSVEDAIG-VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
            GV   N L+D YGK G V   +  VF ++   D++SWN +I    ++G+L+ A      
Sbjct: 168 FGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDE 227

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           +P  D +S+  ++ G A  G + +A  +   MP  N  SW++++ GY+      +AL LF
Sbjct: 228 MPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELF 287

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
            EMQ   V MDE   +T+LS  A L AL  G  +H  + K G+     +++AL+DMYSKC
Sbjct: 288 KEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKC 347

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G++++A  +F+    K +  W++MI G A +    K IELF ++     ++P  +T++N+
Sbjct: 348 GRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIEC-GIEPSEITYINI 406

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           LAAC+H+ +  D   + F  M ++   KP ++H   ++ L+G+ G +  A R++  +   
Sbjct: 407 LAACTHSGL-VDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVK 465

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
           +   +WRALLSA     ++++       +IK+E  +D  YV+  N+Y +   WD++  +R
Sbjct: 466 ADPAIWRALLSACKLHRNVELGEQVGRILIKMEPQNDMNYVLFSNVYAAVNRWDISGKLR 525

Query: 496 NFMRERGLRKEAGCSWIEVENVAAH 520
             M+ RG++K  GCS IE+ N A H
Sbjct: 526 REMKVRGMQKNPGCSSIEL-NGAVH 549



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 123/311 (39%), Gaps = 72/311 (23%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLAD-AHK 59
           PN++   ++  A S        +Q H  ++K  F   V    +L+ FY K+  +     +
Sbjct: 133 PNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRR 192

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEI---------YADAYSFTSA 110
           +F +I  P VVSWN LI+GYV+SG   +A  LF E+   ++         YADA   + A
Sbjct: 193 VFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLVGYADAGFLSEA 252

Query: 111 -----------------------------------------------------LAACGQL 117
                                                                L+AC +L
Sbjct: 253 SCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARL 312

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
           G+L  G  +H  I K+ ++    ++  LIDMY KCG ++ A  VF E  DK +  W+S+I
Sbjct: 313 GALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMI 372

Query: 178 AASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSM-----P 228
              A +   E A     ++      P  I+Y  ++      G ++  + I + M     P
Sbjct: 373 GGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIFNRMVENQKP 432

Query: 229 SPNSSSWNSIL 239
            P    +  I+
Sbjct: 433 KPRMQHYGCIV 443



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 2/190 (1%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +E ++  LL A + LG     + LH YI K G   +  +STAL+  Y K   +  A K+F
Sbjct: 298 DEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVF 357

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            E     V  W+S+I G        KA+ LF ++    I     ++ + LAAC   G + 
Sbjct: 358 QETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVD 417

Query: 122 LGMAIHSKIVKYSLERGVVIA-NCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
           +G+ I +++V+    +  +    C++D+ G+ G + DA  V   M +  D   W ++++A
Sbjct: 418 VGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSA 477

Query: 180 SARNGNLELA 189
              + N+EL 
Sbjct: 478 CKLHRNVELG 487


>gi|347954458|gb|AEP33729.1| chlororespiratory reduction 21, partial [Brassica rapa]
          Length = 788

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 154/525 (29%), Positives = 282/525 (53%), Gaps = 13/525 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +   L AS+++G     +Q H   + +G   +  + T+++ FY K+  +  A  +
Sbjct: 228 PTRVTVSTCLSASANMGGVEEGKQSHALAVVNGLELDNILGTSVLNFYCKVGLVEYAEMV 287

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VV+WN LISGYVQ G    A+ +   +   ++  D  + ++ ++   +  + 
Sbjct: 288 FDRMVGKDVVTWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSTAARTQNS 347

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +    +++S E  +V+A+  +DMY KCGS+ DA  VF   + KD+I WN+++AA 
Sbjct: 348 KLGKEVQCYCIRHSFESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLAAY 407

Query: 181 ARNG----NLELAFGF-LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PN 231
           A +G     L L +   L  +P P+ I++N +I  + + G +++A  +   M S    P 
Sbjct: 408 AESGLSGEALRLFYEMQLESVP-PNVITWNLIILSLLRNGQVDEAKKMFLQMQSSGIVPT 466

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SW +++ G V      EA+H   +MQ   +  + ++ +  LS  A L++L +G  +H 
Sbjct: 467 IVSWTTMMNGLVQNGCSEEAIHYLRKMQEYGMRPNVFSITVALSACANLASLHFGRSVHG 526

Query: 292 CVIKQGLDASIV-VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
            +I+  L +S V + ++L+DMY+KCG +  A+ +FR      L  +NAMI+ YA  G++ 
Sbjct: 527 YIIRNRLHSSSVSIETSLVDMYAKCGDISKAEKVFRRKLFSELPLYNAMISAYALYGNVE 586

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + + L+  L  +  ++PD++TF N+L+AC+H     ++  E F  M   +G+KP +EH  
Sbjct: 587 EAMALYRSLDDM-GIKPDNITFTNILSACNHAG-DINQAIEIFSDMVSKHGVKPCLEHYG 644

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            M+ L+   GE  +A R++ E+ +     + ++LL+        ++    + ++++ E D
Sbjct: 645 LMVDLLASAGETEKALRLMEEMPYEPDARMIQSLLATCNKEHKTELVEYLSKQLLESEPD 704

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           +   YV + N Y   G+WD    MR  M+ +GL+K+ GCSWI V+
Sbjct: 705 NSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKQPGCSWIRVK 749



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/524 (26%), Positives = 242/524 (46%), Gaps = 51/524 (9%)

Query: 23  QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           QQ+H  ILK+G  +  N ++ T L+ FY K ++L  A  +F ++   +V SW ++I    
Sbjct: 46  QQIHARILKNGDFYAKNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKC 105

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + G    AL  FVE+ + EI+ D +   +   ACG L     G  +H  + K  L+  V 
Sbjct: 106 RMGLVEGALMGFVEMLKDEIFPDNFVVPNVCKACGALQWRGFGRGVHGYVAKSGLDDCVF 165

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL------- 193
           +A+ L DMYGKCG ++DA  VF E+ ++++++WN+++    +NG  E A   +       
Sbjct: 166 VASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEG 225

Query: 194 ---------------------------HRLP-----NPDTISYNEVINGIAQFGDIEDAI 221
                                      H L        D I    V+N   + G +E A 
Sbjct: 226 VEPTRVTVSTCLSASANMGGVEEGKQSHALAVVNGLELDNILGTSVLNFYCKVGLVEYAE 285

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           M+   M   +  +WN +++GYV +  V +A+ +   M+ + +  D  T ST++S  A   
Sbjct: 286 MVFDRMVGKDVVTWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSTAARTQ 345

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
               G  +    I+   ++ IV+AS  +DMY+KCG +  A  +F S  +K+L+ WN ++ 
Sbjct: 346 NSKLGKEVQCYCIRHSFESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLA 405

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            YA +G   + + LF +++ +  + P+ +T+ N++      +   D+  + F  M +  G
Sbjct: 406 AYAESGLSGEALRLFYEMQ-LESVPPNVITW-NLIILSLLRNGQVDEAKKMFLQM-QSSG 462

Query: 402 IKPTVEHCCSMIRLMGQKG---EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           I PT+    +M+  + Q G   E     R ++E G           LSA    + L   R
Sbjct: 463 IVPTIVSWTTMMNGLVQNGCSEEAIHYLRKMQEYGMRPNVFSITVALSACANLASLHFGR 522

Query: 459 ISAAEVI--KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
                +I  +L   S  +   L ++Y   G  D++   + F R+
Sbjct: 523 SVHGYIIRNRLHSSSVSIETSLVDMYAKCG--DISKAEKVFRRK 564



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 216/491 (43%), Gaps = 83/491 (16%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +V+ ++ +A   L W  + + +H Y+ KSG    VFV+++L   Y K   L DA K+
Sbjct: 127 PDNFVVPNVCKACGALQWRGFGRGVHGYVAKSGLDDCVFVASSLADMYGKCGVLDDARKV 186

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EIP+ +VV+WN+L+ GYVQ+G   +A+ L  ++    +     + ++ L+A   +G +
Sbjct: 187 FDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMGGV 246

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G   H+  V   LE   ++   +++ Y K G VE A  VF  M+ KD+++WN +I+  
Sbjct: 247 EEGKQSHALAVVNGLELDNILGTSVLNFYCKVGLVEYAEMVFDRMVGKDVVTWNLLISGY 306

Query: 181 ARNGNLELAFGF--LHRLPN-------------------------------------PDT 201
            + G +E A     L RL                                        D 
Sbjct: 307 VQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIRHSFESDI 366

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           +  +  ++  A+ G I DA  +  S    +   WN++L  Y       EAL LF EMQ +
Sbjct: 367 VLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLE 426

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            VP +                +TW ++I S +                    + GQV+ A
Sbjct: 427 SVPPN---------------VITWNLIILSLL--------------------RNGQVDEA 451

Query: 322 DSMFRSLCRK----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
             MF  +        +V+W  M+ G  +NG   + I    +++    ++P+  +    L+
Sbjct: 452 KKMFLQMQSSGIVPTIVSWTTMMNGLVQNGCSEEAIHYLRKMQEY-GMRPNVFSITVALS 510

Query: 378 ACSH-TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
           AC++   + F +    +    + +    ++E   S++ +  + G++ +A+++ R   F  
Sbjct: 511 ACANLASLHFGRSVHGYIIRNRLHSSSVSIE--TSLVDMYAKCGDISKAEKVFRRKLFSE 568

Query: 437 YGVVWRALLSA 447
              ++ A++SA
Sbjct: 569 LP-LYNAMISA 578



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 5/135 (3%)

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG--LDASIVVA 305
           + EAL L  EM  ++V +    +  +L G         G  IH+ ++K G     +  + 
Sbjct: 7   IKEALSLVTEMDFRNVRIGPEIYGEILQGCVYERDFHTGQQIHARILKNGDFYAKNEYIE 66

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF-EQLKTVRD 364
           + L+  Y+KC  +EIA+ +F  L  +N+ +W A+I    R G +   +  F E LK   +
Sbjct: 67  TKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRMGLVEGALMGFVEMLKD--E 124

Query: 365 LQPDSVTFLNVLAAC 379
           + PD+    NV  AC
Sbjct: 125 IFPDNFVVPNVCKAC 139


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 145/475 (30%), Positives = 254/475 (53%), Gaps = 32/475 (6%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           TA++  Y +++ L +A ++F E+PQ + VSW+++I+ Y QSG   ++L LF  + +    
Sbjct: 254 TAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFK 313

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            +   F+S L+A   + +LQ GM IH  + K   E+ V +++ LIDMY KCG  +D   +
Sbjct: 314 PNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFL 373

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F  +++K+++SWN+++   + NG++                               E+A 
Sbjct: 374 FDTILEKNMVSWNAMVGGYSLNGHM-------------------------------EEAK 402

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            + + MP  N+ SW++I+ G+++  +  E   +F EM       ++ TFS++L   A  +
Sbjct: 403 YLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTA 462

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           +L  G  +H  ++K G+     V +AL DMY+K G +E +  +F  + +KN V+W AMI 
Sbjct: 463 SLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEVSWTAMIQ 522

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G A +G   + + LFE+++    + P+ V FL VL ACSH+ +  DK   YF SM   YG
Sbjct: 523 GLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGL-VDKGLWYFNSMEAVYG 581

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           +KP   H   ++ ++ + G ++ A+  I  + F      W ALLS      + ++A   A
Sbjct: 582 LKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAWAALLSGCKTYKNEELAERVA 641

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++ ++   +   YV+L N+Y S G W     +R  M+ +GL+K  GCSW+E+ +
Sbjct: 642 GKLWEMAEKNCAGYVLLSNIYASAGRWRDVLKVRKLMKAKGLKKSGGCSWVEIRD 696



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 134/472 (28%), Positives = 221/472 (46%), Gaps = 78/472 (16%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           TAL+  + K   + ++   F   P  +VVSW + ISGYVQ+G   +A+ LF++L  SE+ 
Sbjct: 122 TALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVK 181

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            +  +FTS + AC  LG   LGM++   IVK   E  + ++N LI +  + G +  A  V
Sbjct: 182 PNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREV 241

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F  M +KD++SW +                               +++   +  ++ +A 
Sbjct: 242 FDRMEEKDVVSWTA-------------------------------ILDLYVEMDELGEAR 270

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            I   MP  N  SW++++  Y       E+L LF  M  +    +   FS++LS +A + 
Sbjct: 271 RIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVE 330

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL  GM IH  V K G +  + V+S+L+DMY KCG+ +    +F ++  KN+V+WNAM+ 
Sbjct: 331 ALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVG 390

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP-FDKVSEYFESMTKDY 400
           GY+ NG + +   LF  +  VR    ++V++  ++A   H D   FD++ E F  M    
Sbjct: 391 GYSLNGHMEEAKYLF-NIMPVR----NNVSWSAIIAG--HLDCEQFDEMFEVFNEMI--- 440

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
                         L+G+         +  +  F S       LL A  + + LD  +  
Sbjct: 441 --------------LLGE---------IPNKSTFSS-------LLCACASTASLDKGKNL 470

Query: 461 AAEVIKLEGDSD-YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSW 511
             +++KL    D YV   L ++Y   G  D+ S  + F R   + K+   SW
Sbjct: 471 HGKIVKLGIQCDTYVGTALTDMYAKSG--DIESSKKVFNR---MPKKNEVSW 517



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 152/310 (49%), Gaps = 8/310 (2%)

Query: 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
           A +  S L      G ++ G A+H+ + K  +     I+  L+ MY       +A  +  
Sbjct: 21  AQTCVSLLKNLTNQGLIRDGSALHAHLFKTGISSEQYISIKLLIMYLNYRKSAEADQISK 80

Query: 164 EMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMI 223
           +    D++  N +I+A+ + GNL+ A      +P  + IS+  +I+G  ++G + +++  
Sbjct: 81  DFDGFDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWY 140

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
               P  N  SW + ++GYV      EA+ LF ++   +V  ++ TF++++   A L   
Sbjct: 141 FERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDF 200

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             GM +   ++K G +  + V+++L+ +  + G++ +A  +F  +  K++V+W A++  Y
Sbjct: 201 GLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLY 260

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
               +L +   +F+++      Q + V++  ++A    +  P + +   F  M ++ G K
Sbjct: 261 VEMDELGEARRIFDEMP-----QRNEVSWSAMIARYCQSGYPEESL-RLFCRMIQE-GFK 313

Query: 404 PTVEHCCSMI 413
           P +  C S I
Sbjct: 314 PNIS-CFSSI 322


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 147/522 (28%), Positives = 273/522 (52%), Gaps = 34/522 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  I++ G   + F+ +  +     +++ +    +F  +  PS V WN+ I GY ++
Sbjct: 42  EQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSEN 101

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
                 ++LF+ ++RS+   D +++ S + AC ++  ++ G+A H   V+  +   V + 
Sbjct: 102 YSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVM 161

Query: 143 NCLIDMYGKCG------SVEDAIG-------------------------VFGEMIDKDII 171
             LID+YGKCG       V D +G                         +F EM +K+ +
Sbjct: 162 TSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAV 221

Query: 172 SWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
           SWN++I+   + G+L  A      +P+ + +S+  +I+G A+ GD+  A  +    P  +
Sbjct: 222 SWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERD 281

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             +W+++++GYV   +  EA+ +F EM S++V  DE+   +++S  + + +L     +  
Sbjct: 282 VVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDD 341

Query: 292 CVIKQGLDASIV-VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
            V K  +D     V +AL+DM +KCG ++ A  +F  + +++L+++ +M+ G + +G   
Sbjct: 342 YVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGP 401

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + + LF ++     L PD V F  +L ACS   +  D+   YFESM  DY I P+ +H  
Sbjct: 402 QAVSLFSRMLN-EGLTPDDVAFTVILTACSRAGL-VDEGCYYFESMKTDYSIVPSPDHYA 459

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            M+ L+G+ G +  A  +++ +    +   W ALL A     D+++  + A ++ +LE  
Sbjct: 460 CMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQ 519

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           +   YV+L N+Y +   W   S++RN MRERG+RK  GCSWI
Sbjct: 520 NAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 561


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 159/517 (30%), Positives = 263/517 (50%), Gaps = 48/517 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    L +A + L       ++  ++L  GF S++FVS A++        L  A KM
Sbjct: 77  PDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKM 136

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +     +VSWNS+I+GYV+ G   +ALN + E++   I  D  +    +++C QL  L
Sbjct: 137 FDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDL 196

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG   H  I +  L+  V +AN L+DMY KCG++E A  +F  M +K ++SW +     
Sbjct: 197 DLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTT----- 251

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                                                    M+   MP  +   WN+++ 
Sbjct: 252 -----------------------------------------MLFDEMPDKDVVPWNAMIG 270

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GYV+ NR  EAL LF EMQ+ ++  DE T  + LS  + L AL  G+ IH  + K  L  
Sbjct: 271 GYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSL 330

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           ++ + +AL+DMY+KCG++  A  +F+ L  +N +TW A+I+G A +G+    I  F ++ 
Sbjct: 331 NVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMI 390

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
               + PD VTFL +L+AC H  +  ++  +YF  M+  + + P ++H   M+ L+G+ G
Sbjct: 391 D-NSVMPDEVTFLGLLSACCHGGL-VEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAG 448

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
            +  A+ +I+ +   +  VVW AL  A     ++ +   +A+++++++     +YV+L N
Sbjct: 449 LLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLAN 508

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           +Y     W  A   R  MR+RG+ K  GCS IEV  +
Sbjct: 509 MYGEAEMWKEAGKXRKLMRQRGVEKTPGCSSIEVNGI 545



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 118/222 (53%), Gaps = 6/222 (2%)

Query: 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE-MQSKDVPMDEY 268
            I+++ D++    IL +  +PN+ SWN  + G+++     EA+ L+   +Q      D Y
Sbjct: 21  AISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNY 80

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           T+  +    A LS +  G  I   V+  G D+ I V++A++ +   CG ++ A  MF   
Sbjct: 81  TYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKS 140

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIPFD 387
           C ++LV+WN+MI GY R G   + +  + ++K V  ++PD VT + V+++C+   D+   
Sbjct: 141 CVRDLVSWNSMINGYVRRGWAYEALNFYREMK-VEGIKPDEVTMIGVVSSCAQLEDLDLG 199

Query: 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429
           + S  +    ++ G+K TV    +++ +  + G +  A+++ 
Sbjct: 200 RESHCY---IEENGLKLTVPLANALMDMYMKCGNLESARKLF 238


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 146/494 (29%), Positives = 270/494 (54%), Gaps = 31/494 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H  I+ +GF S++ V+TAL+  Y K  S  +A ++F ++ +  +VSWN +I  YVQ+
Sbjct: 227 RKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQN 286

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G + +AL L+ +L+         +F S L AC  + +L  G  +HS I++  L+  V +A
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVA 346

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
             L++MY KCGS+E+A  VF  M ++D ++W+++I A A NG     +G           
Sbjct: 347 TALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNG-----YG----------- 390

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ-SK 261
                        D   A  +   + S ++  WN+++T YV       A+ +F EM  + 
Sbjct: 391 ------------KDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAA 438

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D  TF  +L   A L  L+    +H+ + +  L++++VV + L++MY++CG +E A
Sbjct: 439 GLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEA 498

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           + +F +   K +V+W AM+  +++ G   + ++LF+++  +  ++PD VT+ ++L  C+H
Sbjct: 499 ERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMD-LEGVKPDDVTYTSILFVCTH 557

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
                ++   YF  M + +G+ PT +H  +M+ L+G+ G ++ A+ ++  + F    V W
Sbjct: 558 GG-SLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAW 616

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
              L+A      L++   +A  V +L+  S   Y+ + N+Y +HG W+  + +R  M ER
Sbjct: 617 MTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEER 676

Query: 502 GLRKEAGCSWIEVE 515
           GL+K  G S+IEV+
Sbjct: 677 GLKKLPGLSFIEVD 690



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 183/383 (47%), Gaps = 43/383 (11%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
           D  +F + L +C   G +  G A+H +I     ER  ++ N LI MYGKC S+ DA  VF
Sbjct: 6   DNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVF 65

Query: 163 GEM--IDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISY------------ 204
             M    ++++SWN++IAA A+NG+   A     R+       D +++            
Sbjct: 66  ESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ 125

Query: 205 --------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
                               N ++   A+FG + DA  +  S+ + + +SWN+++  +  
Sbjct: 126 GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQ 185

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV 304
                 AL +F EM+  D+  +  T+  ++SG +    L  G  IH+ ++  G D+ +VV
Sbjct: 186 SGDWSGALRIFKEMKC-DMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVV 244

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
           A+AL++MY KCG    A  +F  + ++++V+WN MI  Y +NGD  + +EL+++L  +  
Sbjct: 245 ATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLD-MEG 303

Query: 365 LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424
            +    TF+++L ACS   +          S   + G+   V    +++ +  + G +  
Sbjct: 304 FKRTKATFVSILGACS--SVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEE 361

Query: 425 AQRMIRELGFGSYGVVWRALLSA 447
           A+++   +      V W  L+ A
Sbjct: 362 ARKVFNAMK-NRDAVAWSTLIGA 383



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 2/205 (0%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      +L A + LG  +  + LH  I +S   SNV V+  L+  Y +  SL +A ++
Sbjct: 442 PDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERL 501

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    + +VVSW ++++ + Q G+Y +AL+LF E++   +  D  ++TS L  C   GSL
Sbjct: 502 FAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSL 561

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G    + + + + L         ++D+ G+ G + DA  +   M  + D ++W + + 
Sbjct: 562 EQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLT 621

Query: 179 ASARNGNLELAFGFLHRLPNPDTIS 203
           A   +G LEL      R+   D  S
Sbjct: 622 ACRIHGKLELGEAAAERVYELDPSS 646


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 153/486 (31%), Positives = 271/486 (55%), Gaps = 15/486 (3%)

Query: 35  LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE 94
           + +V   TA++  Y ++  + +A ++F  +P  +VVSWN++I GY ++ +  KA+ +F  
Sbjct: 35  IKDVVTWTAMLSGYVRLKRIEEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFER 94

Query: 95  L-ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
           + ER+ +     S+ + +AA  Q G ++       ++ K    R V+    ++    + G
Sbjct: 95  MHERNMV-----SWNAVIAALVQCGRVEEARRRFDEMPK----RDVISWTTMVMGLARSG 145

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQ 213
            V++A  VF  M +++++SWN+++   A+N  L+ AF    R+P  +  S+N +I G  Q
Sbjct: 146 RVDEARKVFDRMPERNVVSWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQ 205

Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFST 272
            G++  A  + + MP  N  SW +++TGYV       AL +F EM +      +E TF  
Sbjct: 206 NGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVN 265

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS--LCR 330
           +L   + ++ L  G  +H  + K        VASALL+MYSKCG++ IA  +F    + +
Sbjct: 266 VLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQ 325

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
           ++LV WN MI  YA +G   + IELFE ++ +   +P+ V+++ +L+ACSH  +  D+  
Sbjct: 326 RDLVLWNGMIAAYAHHGCGMEAIELFEDMQGL-GFKPNDVSYVELLSACSHAGL-VDEGL 383

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450
            YF+ + +D  I+   +H   ++ L G+ G +  A   I++LG  +   +W  LL+   A
Sbjct: 384 NYFDELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDFIKQLGTKASSSIWGGLLAGCNA 443

Query: 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCS 510
             DL++ +++A E+ K + ++   Y++L N+Y S   W  AS +R  M+E+GL+K+ GCS
Sbjct: 444 HGDLEIGQLAAKELEKEDPENAGTYLLLSNIYASGRKWREASRVRLKMKEKGLKKQPGCS 503

Query: 511 WIEVEN 516
           WIEV N
Sbjct: 504 WIEVGN 509



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 155/315 (49%), Gaps = 46/315 (14%)

Query: 66  QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA 125
           +  VV+W ++ISGY++ G    A  LF   +R +   D  ++T+ L+   +L  ++    
Sbjct: 3   ERDVVTWTAVISGYIKCGLIVDARRLF---DRVDAIKDVVTWTAMLSGYVRLKRIEEA-- 57

Query: 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN 185
              ++ +    + VV  N +ID YGK   V+ AI VF  M +++++SWN+VIAA  + G 
Sbjct: 58  --ERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCGR 115

Query: 186 LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245
           +E A      +P  D IS+  ++ G+A+ G +++A  +   MP  N  SWN+++TGY   
Sbjct: 116 VEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGYAKN 175

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
            R+ EA  LF  M  +++     +++TM++G      L W                    
Sbjct: 176 MRLDEAFDLFERMPERNLS----SWNTMITGFIQNGELAW-------------------- 211

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
                          A  +F  +  KN+V+W  MITGY + G+    +++F ++      
Sbjct: 212 ---------------ARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGA 256

Query: 366 QPDSVTFLNVLAACS 380
           +P+  TF+NVL ACS
Sbjct: 257 RPNEGTFVNVLGACS 271



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 145/332 (43%), Gaps = 55/332 (16%)

Query: 165 MIDKDIISWNSVIAASARNG--------------------------------NLELAFGF 192
           M ++D+++W +VI+   + G                                 +E A   
Sbjct: 1   MHERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERL 60

Query: 193 LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEAL 252
              +P  + +S+N +I+G  +  +++ AI +   M   N  SWN+++   V   RV EA 
Sbjct: 61  FEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCGRVEEAR 120

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
             F EM  +DV     +++TM+ G+A    +         V  +  + ++V  +A++  Y
Sbjct: 121 RRFDEMPKRDV----ISWTTMVMGLARSGRVDEA----RKVFDRMPERNVVSWNAMVTGY 172

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
           +K  +++ A  +F  +  +NL +WN MITG+ +NG+L    ++F ++      + + V++
Sbjct: 173 AKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMP-----EKNVVSW 227

Query: 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKP------TVEHCCSMIRLMGQKGEVWRAQ 426
             ++          +   + F  M KD G +P       V   CS +  +G+  +V    
Sbjct: 228 TTMITGYVQEG-ESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQV---H 283

Query: 427 RMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
            +I +  +     V  ALL+    C +L +AR
Sbjct: 284 LLISKSVYQDRTFVASALLNMYSKCGELSIAR 315



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 4/193 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE    ++L A SD+      QQ+H  I KS +    FV++AL+  Y K   L+ A K+
Sbjct: 258 PNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKI 317

Query: 61  F--VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           F  V I Q  +V WN +I+ Y   G   +A+ LF +++      +  S+   L+AC   G
Sbjct: 318 FDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAG 377

Query: 119 SLQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNSV 176
            +  G+    ++ +  S++       CL+D+ G+ G +++A     ++  K   S W  +
Sbjct: 378 LVDEGLNYFDELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDFIKQLGTKASSSIWGGL 437

Query: 177 IAASARNGNLELA 189
           +A    +G+LE+ 
Sbjct: 438 LAGCNAHGDLEIG 450


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 160/499 (32%), Positives = 256/499 (51%), Gaps = 38/499 (7%)

Query: 23  QQLHCYILKSGFL--SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H   +  G L      ++  L+  Y ++ S  DA K+F  I  P +VSW  LIS Y+
Sbjct: 20  KQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYL 79

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
            + +  KA ++F  L  S +  D++    A++ACG    L  G  +H  + ++ L    +
Sbjct: 80  HTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPI 139

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           + N LIDMY                               +R+G +E+A      +   D
Sbjct: 140 VGNALIDMY-------------------------------SRSGAIEVACSVFKTMEIKD 168

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
             S+  ++NG  +  DIE A  I   MP  NS SW +++TGYV        L LF EM++
Sbjct: 169 VSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRA 228

Query: 261 --KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
             KD P    T   +LSG A + A   G  +H  V K  LD  + V +AL+DMY+K G +
Sbjct: 229 EGKDWPT-VITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGAL 287

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            +A  +F+ + ++++ +W  MI+G A +G  T  +E F  +     + P+ VT L+VL+A
Sbjct: 288 VLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSK-SGVVPNEVTLLSVLSA 346

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH  +  +  S  F+ M + +GIKP ++H   M+ L+G+ G +  A+ +I  +      
Sbjct: 347 CSHAGLVVEGRS-LFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDS 405

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
           V+WR+LLSA     +L +A ++   +I+LE D D VY++L N+Y S   W+ A   R  M
Sbjct: 406 VIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAM 465

Query: 499 RERGLRKEAGCSWIEVENV 517
           R+R ++K+ GCSW+EV  V
Sbjct: 466 RDRRVKKKPGCSWVEVNGV 484



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 99/191 (51%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +  +L   +D+G       +H Y+ K+    +V V+ ALM  Y K  +L  A K+
Sbjct: 234 PTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKI 293

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+  V SW ++ISG    GK   AL  F ++ +S +  +  +  S L+AC   G +
Sbjct: 294 FQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLV 353

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G ++  K+V+ + ++  +    C++D+ G+ G + +A  +   M I  D + W S+++
Sbjct: 354 VEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLS 413

Query: 179 ASARNGNLELA 189
           A   +GNL LA
Sbjct: 414 ACLVHGNLALA 424



 Score = 45.1 bits (105), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 9/196 (4%)

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV--VASALLDMYSKCGQVEIAD 322
           M+  TF  +L     L  L     IH   +  GL  S    +A  LL+ Y++ G    A 
Sbjct: 1   MNTQTFYFLLQKCGSLEKLKQ---IHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQ 57

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F  +   ++V+W  +I+ Y       K   +F  L     L+PDS   +  ++AC H 
Sbjct: 58  KVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFH-SGLRPDSFCVVGAVSACGHR 116

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
               +    +      + G  P V +  ++I +  + G +  A  + + +        W 
Sbjct: 117 KDLSNGRIVHGMVFRFELGSDPIVGN--ALIDMYSRSGAIEVACSVFKTMEIKDVS-SWT 173

Query: 443 ALLSASGACSDLDVAR 458
           +LL+    C+D++ AR
Sbjct: 174 SLLNGFIKCNDIEAAR 189


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 158/523 (30%), Positives = 269/523 (51%), Gaps = 41/523 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    ++ A + L      + +H  +L  GF S++++  AL+  Y + N L  A K+
Sbjct: 113 PDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKV 172

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKAL-------NLFVELERSEIYADAYSFTSALAA 113
           F E+P   VVSWNSLISGY  +G + +AL        LF+E+  ++   D  + TS L A
Sbjct: 173 FEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMV-NQFKPDLLTITSILQA 231

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISW 173
           CG LG L+ G  +H  ++    E     +N LI+MY KCG++  +  VF  M  KD +SW
Sbjct: 232 CGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSW 291

Query: 174 NSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS 233
                                          N +IN   Q G + D++ +  +M + +  
Sbjct: 292 -------------------------------NSMINVYIQNGKMGDSLKVFENMKARDII 320

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           +WN+I+   V+       L +   M+++ V  D  T  ++L   + L+A   G  IH C+
Sbjct: 321 TWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCI 380

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
            K GL++ + V + L++MYSKCG +  +  +F+ +  K++VTW A+I+     G+  K +
Sbjct: 381 FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAV 440

Query: 354 ELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMI 413
             F +++    + PD V F+ ++ ACSH+ +  + ++ YF  M KDY I+P +EH   ++
Sbjct: 441 RAFGEMEAA-GIVPDHVAFVAIIFACSHSGLVEEGLN-YFHRMKKDYKIEPRIEHYACVV 498

Query: 414 RLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY 473
            L+ +   + +A+  I  +       +W ALLSA     D ++A   +  +I+L  D   
Sbjct: 499 DLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTG 558

Query: 474 VYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            YV++ N+Y + G WD    +R  ++ RGL+K+ GCSW+E++N
Sbjct: 559 YYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQN 601



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 91/182 (50%), Gaps = 5/182 (2%)

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR-SL 328
           FS++   +A  +  T    +HS +I  GL  S++ ++ L+  Y+       + S+FR + 
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 75

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDK 388
              N+  WN++I     NG  ++ + L+ + + +R LQPD+ TF +V+ AC+   + F+ 
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIR-LQPDTYTFPSVINACAGL-LDFE- 132

Query: 389 VSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSAS 448
           +++       D G    +    ++I +  +  ++ +A+++  E+      V W +L+S  
Sbjct: 133 MAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDV-VSWNSLISGY 191

Query: 449 GA 450
            A
Sbjct: 192 NA 193


>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 165/524 (31%), Positives = 282/524 (53%), Gaps = 14/524 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCY-ILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P    +   L AS++L      +Q H   IL S  L N+ + ++++ FY K+  + DA  
Sbjct: 281 PTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNI-LGSSIINFYSKVGLIEDAEL 339

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLG 118
           +F  + +  VV+WN LIS YVQ  +  KALN+   L RSE +  D+ + +S L+A     
Sbjct: 340 VFSRMLEKDVVTWNLLISSYVQHHQVGKALNM-CHLMRSENLRFDSVTLSSILSASAVTS 398

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           +++LG   H   ++ +LE  VV+AN +IDMY KC  ++DA  VF    ++D++ WN+++A
Sbjct: 399 NIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLA 458

Query: 179 ASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMPS----P 230
           A A+ G    A    +++      P+ IS+N VI G  + G + +A  + S M S    P
Sbjct: 459 AYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQP 518

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
           N  +W ++++G        EA+  F +MQ   +     + +++L     + +L +G  IH
Sbjct: 519 NLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIH 578

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
             + +     S+ VA++L+DMY+KCG ++ A  +F  +  K L  +NAMI+ YA +G   
Sbjct: 579 GFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAV 638

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + + LF+ L+    ++PDS+TF ++L+ACSH  +  + ++  F  M   + + P +EH  
Sbjct: 639 EALALFKHLQK-EGIEPDSITFTSILSACSHAGLVNEGLN-LFADMVSKHNMNPIMEHYG 696

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            ++ L+ + G +  A R+I  + F     +  +LL+A     ++++    +  + KLE  
Sbjct: 697 CVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPS 756

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           +   YV L N Y + G W   S MR+ M+ RGLRK  GCSWI+ 
Sbjct: 757 NSGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQT 800



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 139/566 (24%), Positives = 269/566 (47%), Gaps = 89/566 (15%)

Query: 23  QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           QQ+H  ILK+G  F  N +V T L+ FY K +    A ++F  +   +V SW +++    
Sbjct: 99  QQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQC 158

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + G    AL  F+E++ + ++ D +   + L ACG L  + LG  +H  ++K      V 
Sbjct: 159 RMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVF 218

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG---------------- 184
           +++ L+DMYGKCG +EDA  VF  M++K++++WNS+I    +NG                
Sbjct: 219 VSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEG 278

Query: 185 ----------------NLEL--------AFGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220
                           NL+         A   L+ L + D I  + +IN  ++ G IEDA
Sbjct: 279 IEPTRVTVASFLSASANLDALIEGKQGHAIAILNSL-DLDNILGSSIINFYSKVGLIEDA 337

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
            ++ S M   +  +WN +++ YV  ++V +AL++   M+S+++  D  T S++LS  A  
Sbjct: 338 ELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVT 397

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           S +  G   H   I++ L++ +VVA++++DMY+KC +++ A  +F S   ++LV WN ++
Sbjct: 398 SNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLL 457

Query: 341 TGYA-----------------------------------RNGDLTKVIELFEQLKTVRDL 365
             YA                                   RNG + +  ++F Q++++   
Sbjct: 458 AAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSL-GF 516

Query: 366 QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425
           QP+ +T+  +++  + +   ++ +  +F+ M ++ GI+P++    S++        +W  
Sbjct: 517 QPNLITWTTLISGLAQSGFGYEAIL-FFQKM-QEAGIRPSIASITSVLLACTDIPSLWYG 574

Query: 426 QRM---IRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY-VYVMLCNL 481
           + +   I    F     V  +L+     C  +D A+    +V  +    +  +Y  + + 
Sbjct: 575 RAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAK----KVFHMMSSKELPIYNAMISA 630

Query: 482 YTSHGNWDVASVMRNFMRERGLRKEA 507
           Y  HG    A  +   +++ G+  ++
Sbjct: 631 YALHGQAVEALALFKHLQKEGIEPDS 656



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 155/348 (44%), Gaps = 42/348 (12%)

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS- 134
           IS   + G  +++++L  E+E  +       +   L  C    +L  G  IH++I+K   
Sbjct: 51  ISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGD 110

Query: 135 -LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA-FGF 192
              +   +   L+  Y KC   E A+ +F  +  +++ SW +++    R G  E A  GF
Sbjct: 111 FFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGF 170

Query: 193 LHRLPN---PDTISYNEVINGIAQF----------------------------------- 214
           +    N   PD      V+                                         
Sbjct: 171 IEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKC 230

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G +EDA  +  SM   N  +WNS++ GYV      EA+ +F +M+ + +     T ++ L
Sbjct: 231 GVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFL 290

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
           S  A L AL  G   H+  I   LD   ++ S++++ YSK G +E A+ +F  +  K++V
Sbjct: 291 SASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVV 350

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           TWN +I+ Y ++  + K + +   +++  +L+ DSVT  ++L+A + T
Sbjct: 351 TWNLLISSYVQHHQVGKALNMCHLMRS-ENLRFDSVTLSSILSASAVT 397


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 162/554 (29%), Positives = 284/554 (51%), Gaps = 41/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +    +L A +D        Q+H  I+K+GF    FV  AL+  Y K   + DA  +
Sbjct: 203 PNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAV 262

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     V+WN +I GY   G Y +   +F  +  + +      F +AL  C Q   L
Sbjct: 263 FDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQREL 322

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID--KDIISWNSVIA 178
                +H  +VK   E    I   L+  Y KC SV++A  +F  M D   ++++W ++I 
Sbjct: 323 NFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFS-MADAAHNVVTWTAMIG 381

Query: 179 ASARNGNLELAFGFLHRLPN----PDTISYNEVING-----IAQF--------------- 214
              +N N E A     ++      P+  +Y+ V+ G     ++Q                
Sbjct: 382 GFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSV 441

Query: 215 -----------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
                      G++ ++  +  S+P+ +  +W+++LTG        +A+ +F ++  + V
Sbjct: 442 ATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGV 501

Query: 264 PMDEYTFSTMLSGIAGLSA-LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
             +EYTFS++++  +  +A +  G  IH+  +K G   ++ V+SALL MYSK G +E A+
Sbjct: 502 KPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAE 561

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F     +++V+WN+MITGY ++GD  K +E+F+ ++  + L  D VTF+ VL AC+H 
Sbjct: 562 KVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQN-QGLPLDDVTFIGVLTACTHA 620

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  ++  +YF  M KDY I   +EH   M+ L  + G   +A  +I  + F +   +WR
Sbjct: 621 GL-VEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWR 679

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
            LL+A     +L++ +++A +++ L+ +    YV+L N++   GNW+  + +R  M ER 
Sbjct: 680 TLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERK 739

Query: 503 LRKEAGCSWIEVEN 516
           ++KEAGCSWIE++N
Sbjct: 740 VKKEAGCSWIEIKN 753



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 132/475 (27%), Positives = 226/475 (47%), Gaps = 59/475 (12%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+HC  LKSGFL +V V T+L+  Y K     D   +F E+   +VVSW SL+SGY ++
Sbjct: 124 RQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARN 183

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   + ++L  +++   +  + ++F + L A      ++ G+ +H+ IVK   E    + 
Sbjct: 184 GLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVC 243

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------ 196
           N LI MY K   V DA  VF  M+ +D ++WN +I   A  G     F   HR+      
Sbjct: 244 NALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVK 303

Query: 197 -------------PNPDTISYNE------VINGIAQFGDIEDAIMILSSMPSP------- 230
                             +++ +      V NG     DI  A+M+  S  S        
Sbjct: 304 LSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKL 363

Query: 231 --------NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
                   N  +W +++ G+V  N   +A+ LF +M  + V  + +T+ST+L+G    S 
Sbjct: 364 FSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPS-SL 422

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L+    +H+ +IK   +    VA+ALLD Y K G V  +  +F S+  K++V W+AM+TG
Sbjct: 423 LSQ---LHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTG 479

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
            A+  D  K +E+F QL     ++P+  TF +V+ ACS +    +   +   +  K  G 
Sbjct: 480 LAQTRDSEKAMEVFIQL-VKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKS-GK 537

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMI-----REL--------GFGSYGVVWRAL 444
              +    +++ +  +KG +  A+++      R++        G+G +G   +AL
Sbjct: 538 SNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKAL 592



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 119/471 (25%), Positives = 210/471 (44%), Gaps = 53/471 (11%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           AH++F E P   +  +N L+  + ++   R+AL+LF +L  S +  D  + + AL  CG 
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           L    +G  +H + +K      V +   L+DMY K    ED  G+F EM  K+++SW S+
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 177 IAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIE-------------- 218
           ++  ARNG  +     ++++     NP+  ++  V+  +A    IE              
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 219 ---------------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
                                DA  +  SM   +S +WN ++ GY       E   +F  
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M+   V +    F T L   +    L +   +H  V+K G + +  + +AL+  YSKC  
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSS 356

Query: 318 VEIADSMFR-SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           V+ A  +F  +    N+VTW AMI G+ +N +  K ++LF Q+ +   ++P+  T+  VL
Sbjct: 357 VDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQM-SREGVRPNHFTYSTVL 415

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIK-PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           A       P   +S+    + K Y  K P+V    +++    + G V  + R+   +   
Sbjct: 416 AG-----KPSSLLSQLHAQIIKAYYEKVPSV--ATALLDAYVKTGNVVESARVFYSIPAK 468

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEG--DSDYVYVMLCNLYTS 484
              V W A+L+      D + A     +++K EG   ++Y +  + N  +S
Sbjct: 469 DI-VAWSAMLTGLAQTRDSEKAMEVFIQLVK-EGVKPNEYTFSSVINACSS 517



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 1/202 (0%)

Query: 183 NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGY 242
           NG L+ +   +    +P    Y++ +  I+       A  +    P  + S +N +L  +
Sbjct: 20  NGRLQSSIHHIKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDF 79

Query: 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
              N   EALHLF ++ S  + +D  T S  L     L     G  +H   +K G    +
Sbjct: 80  SRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDV 139

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
            V ++L+DMY K    E    +F  +  KN+V+W ++++GYARNG   +VI L  Q++ +
Sbjct: 140 SVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQ-M 198

Query: 363 RDLQPDSVTFLNVLAACSHTDI 384
             + P+  TF  VL A +   I
Sbjct: 199 EGVNPNGFTFATVLGALADESI 220


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 161/536 (30%), Positives = 270/536 (50%), Gaps = 46/536 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGF--YRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H  +L++    + F ++ ++ F       SL  A  +F +IP P+  + NS+I GY 
Sbjct: 57  KQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYT 116

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
                R+A+  +  +    +  D ++F S   +CG L     G  +H    K        
Sbjct: 117 NKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLGFASDAY 173

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP--- 197
           I N L++MY  CG +  A  VF +M++K ++SW ++I A A+      A     R+    
Sbjct: 174 IQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIAS 233

Query: 198 -NPDTISYNEVINGIAQFGDIEDAIMI--------------------------------- 223
             P+ I+   V+   A+  D+E A  +                                 
Sbjct: 234 VKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLAR 293

Query: 224 --LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
              + MP  N   WN ++ G+V  +   EAL LF EMQ   V  D+ T +++L     L 
Sbjct: 294 DLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLG 353

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL  G  +H  + K+ ++  + + +AL+DMY+KCG +E A  +F+ +  K+++TW A+I 
Sbjct: 354 ALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIV 413

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G A  G   K +ELF +++ + +++PD++TF+ VLAACSH  +  + ++ YF SM   YG
Sbjct: 414 GLAMCGQGLKALELFHEMQ-MSEVKPDAITFVGVLAACSHAGLVNEGIA-YFNSMPNKYG 471

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I+P++EH   M+ ++G+ G +  A+ +I+ +       V   LLSA     +L VA  +A
Sbjct: 472 IQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAA 531

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
            ++I+L+  +   YV+L N+Y+S  NW+ A  MR  M ER ++K  GCS IEV  V
Sbjct: 532 QQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGV 587



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 138/267 (51%), Gaps = 9/267 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  L ++L A +        +Q+H YI ++G   +  +++ALM  Y K      A  +
Sbjct: 236 PNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDL 295

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P+ ++  WN +I+G+V+   Y +AL+LF E++ S +  D  +  S L AC  LG+L
Sbjct: 296 FNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGAL 355

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +H  I K  +E  V +   L+DMY KCGS+E A+ VF EM +KD+++W ++I   
Sbjct: 356 ELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGL 415

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
           A  G    A    H +      PD I++  V+   +  G + + I   +SMP+     P+
Sbjct: 416 AMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPS 475

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEM 258
              +  ++       R+ EA  L   M
Sbjct: 476 IEHYGCMVDMLGRAGRIAEAEDLIQNM 502


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 153/516 (29%), Positives = 268/516 (51%), Gaps = 33/516 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      +L A +++    + + LH  I++     +V V   L+  Y K   +  + ++
Sbjct: 123 PNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRV 182

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + + +VV+W SLISG    G   +  ++F ++ +  +  D +   + L  C    ++
Sbjct: 183 FNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETNI 242

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +G  +H   VK  +   V + N  + MY KCG  E A   F  M   D+ISW ++I + 
Sbjct: 243 SIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMITSF 302

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           + +GN+E A  + +R+P  + I                               SWN++L 
Sbjct: 303 SHSGNVERARDYFNRMPERNVI-------------------------------SWNAMLG 331

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
            Y   +   E L L+  M  ++V  D  TF TM+   + L+    G  I S  +K GL +
Sbjct: 332 AYCQNSFWEEGLKLYILMLRQEVRPDWITFVTMIGACSELAISKLGTQILSQAVKVGLGS 391

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
            + V ++ + +YS+CG++E A ++F S+  KNL++WN+++ GYA+NG+  KVIE+F+ + 
Sbjct: 392 DVSVVNSAITLYSRCGRIEEAQNLFDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQNM- 450

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
            +   +PD +T++ +L+ CSH+ +   +   +F SMTKD+GI  T+EH   M+ L G+ G
Sbjct: 451 LMAGCKPDHITYIAILSGCSHSGL-VKEAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAG 509

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
            +  A  MI ++ F     +W ALLSA     D ++A ++   +++L  ++   Y++L N
Sbjct: 510 LLKLALDMIDQMPFKPNASIWGALLSACRIHHDTEMAELAMKNLLELNTENFESYILLAN 569

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            Y+S G  +  S +R  M+E+ ++K+ GCSWIEV N
Sbjct: 570 TYSSFGRLECVSEVRQVMKEKRVQKDPGCSWIEVCN 605



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 160/349 (45%), Gaps = 41/349 (11%)

Query: 113 ACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS 172
           AC  +G +++   +H    KY      VI N +IDMY KC ++  A  VF          
Sbjct: 2   ACSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVF---------- 51

Query: 173 WNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
                                 R+  P   S+N +I G ++  ++  AI     MP  +S
Sbjct: 52  ---------------------LRIEKPSLFSWNCMIYGYSKLHEMGRAIDTFRQMPERDS 90

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
            SWN+I++ + +     ++L  F EM  +    +  T++++LS  A +    WG  +H+ 
Sbjct: 91  VSWNTIISAFSHHGLHIQSLGTFVEMWIQGCQPNSMTYASVLSACANIYDFQWGKHLHAR 150

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           +++      ++V + L+DMY+KCG ++ +  +F +L   N+VTW ++I+G A  G   +V
Sbjct: 151 IVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTLREHNVVTWTSLISGIAHFGSQEEV 210

Query: 353 IELFEQLKTVRD-LQPDSVTFLNVLAACS-HTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
            ++F Q++  +D +  D+     +L  C   T+I    + E     T   G+  +V    
Sbjct: 211 YDIFYQMR--KDCVIMDNFILATILGVCEGETNIS---IGEQLHGFTVKTGMNSSVPVGN 265

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVV-WRALLSASGACSDLDVAR 458
           + + +  + G+  +A      +   ++ V+ W  ++++     +++ AR
Sbjct: 266 ATLSMYAKCGDFEKASLAFETM--AAHDVISWTTMITSFSHSGNVERAR 312


>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 151/497 (30%), Positives = 264/497 (53%), Gaps = 37/497 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKIN-SLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
            Q++ +I+K+G   N   ST  + F    + ++  A+K+FV +P P++ SWN++I  + +
Sbjct: 45  HQIYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKLFVRMPNPNLYSWNTIIRAFSR 104

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           S   + A++LFV++  S+I     ++ S   A  QLG    G  +H ++VK  L+    I
Sbjct: 105 SSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFI 164

Query: 142 ANCLIDMYGKCGSVEDAIGVFG----EMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
            N +I MY   G + +A  VF     E+ D D+++ NS+I                    
Sbjct: 165 CNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIM------------------- 205

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
                       G A+ G+I+++  +   M +  S SWNS+++GYV   ++ EAL LF +
Sbjct: 206 ------------GYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNK 253

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           MQ +   + E+T  ++L+  A L AL  G  +H  + +   + +++V +A++DMY KCG 
Sbjct: 254 MQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGS 313

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           VE A  +F +  R+ L  WN++I G A NG   +  E F +L++ + L+PDSV+F+ VL 
Sbjct: 314 VENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLT 373

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           AC H     +K  +YFE M   Y I+P+++H   ++ ++GQ G +  A+ +I+ +     
Sbjct: 374 ACKHLG-AINKARDYFELMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEELIKGMPLKPD 432

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497
            ++W +LLS+     ++ +AR +A  V +L       YV++ N++ +   ++ A   R  
Sbjct: 433 AIIWGSLLSSCRKHRNVQIARRAAQRVYELNPSDASGYVLMSNVHAASNKFEEAIEQRLL 492

Query: 498 MRERGLRKEAGCSWIEV 514
           M+E    KE GCS IE+
Sbjct: 493 MKENLTEKEPGCSSIEL 509



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +E+ +  LL A + LG   + + +H YI ++ F  NV V TA++  Y K  S+ +A ++F
Sbjct: 262 SEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVF 321

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY-ADAYSFTSALAACGQLGSL 120
              P+  +  WNS+I G   +G  R+A   F +LE S++   D+ SF   L AC  LG++
Sbjct: 322 ETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAI 381

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
                    ++ KY +E  +    C++D+ G+ G +E+A  +   M +  D I W S+++
Sbjct: 382 NKARDYFELMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEELIKGMPLKPDAIIWGSLLS 441

Query: 179 ASARNGNLELAFGFLHRL--PNP-DTISYNEVINGIAQFGDIEDAI 221
           +  ++ N+++A     R+   NP D   Y  + N  A     E+AI
Sbjct: 442 SCRKHRNVQIARRAAQRVYELNPSDASGYVLMSNVHAASNKFEEAI 487


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 159/554 (28%), Positives = 286/554 (51%), Gaps = 43/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y    +L+  + +      +++H ++++ GF S+V V  AL+  Y K   +++A  +
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P+   +SWN++ISGY ++G   + L LF  +    +  D  + T+  +AC  L + 
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNE 315

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN------ 174
           +LG  +H  +VK      + + N LI MY   G +E+A  VF  M  KD++SW       
Sbjct: 316 RLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASL 375

Query: 175 -----------------------------SVIAASARNGNLELAFGFLHRLPNPDTISY- 204
                                        SV++A A  G+L+L             +S+ 
Sbjct: 376 VSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHV 435

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+  ++   +++A+ +  ++   N  SW S++ G    NR  EAL  F +M+  
Sbjct: 436 IVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES 495

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
             P +  T  ++LS  A + AL  G  IH+  ++ G+     + +A+LDMY +CG+   A
Sbjct: 496 MKP-NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPA 554

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            + F S  +K++  WN ++TGYA+ G     +ELF+++  + ++ PD +TF+++L ACS 
Sbjct: 555 LNQFNSQ-KKDVTAWNILLTGYAQQGQAKLAVELFDKMLEL-EIHPDEITFISLLCACSK 612

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           + +  + + EYF  M   Y + P ++H   ++ ++G+ G++  A   I+++       +W
Sbjct: 613 SGMVTEGL-EYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIW 671

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL+A     ++++  I+A  V + +  S   Y++LCNLY   GNWD  S +R+ MRER
Sbjct: 672 GALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRER 731

Query: 502 GLRKEAGCSWIEVE 515
           GL  + GCSW+E++
Sbjct: 732 GLSADPGCSWVEIK 745



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 198/383 (51%), Gaps = 43/383 (11%)

Query: 38  VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER 97
           V +  AL+  + +  +L DA  +F ++ +  V SWN L+ GY ++G + +ALNL+  +  
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 98  SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED 157
           +EI  + Y+F S L  C  +  +  G  IH+ ++++  E  V + N LI MY KCG + +
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251

Query: 158 AIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLP-NPDTISY-------- 204
           A  +F +M  +D ISWN++I+    NG     LEL F  +  L  +PD I+         
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLEL-FSMMRELSVDPDLITMTTVASACE 310

Query: 205 ---------------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
                                      N +I   +  G +E+A  + S M S +  SW +
Sbjct: 311 LLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTA 370

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           ++   V+     +A+  +  M+ + +  DE T  ++LS  A +  L  G+ +H   IK G
Sbjct: 371 MIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTG 430

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
           L + ++V+++L+DMYSKC  V+ A  +FR++  KN+V+W ++I G   N    + +  F 
Sbjct: 431 LVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFR 490

Query: 358 QLKTVRDLQPDSVTFLNVLAACS 380
           Q+K    ++P+SVT ++VL+AC+
Sbjct: 491 QMK--ESMKPNSVTLISVLSACA 511



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 101/179 (56%), Gaps = 1/179 (0%)

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
           N +++   +FG++ DA  +   M   +  SWN ++ GY       EAL+L+  M   ++ 
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
            + YTF ++L   AG+S +  G  IH+ VI+ G ++ + V +AL+ MY KCG +  A  +
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           F  + +++ ++WNAMI+GY  NG   + +ELF  ++ +  + PD +T   V +AC   D
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMREL-SVDPDLITMTTVASACELLD 313



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 75/147 (51%), Gaps = 6/147 (4%)

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
           + + +ALL M+ + G +  A  +F  +  +++ +WN ++ GYA+ G   + + L+ ++  
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 362 VRDLQPDSVTFLNVLAACSH-TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
             +++P+  TF +VL  C+  +DI   K      +    +G +  V+   ++I +  + G
Sbjct: 192 A-EIRPNVYTFPSVLKTCAGVSDIARGK---EIHAHVIRFGFESDVDVGNALITMYVKCG 247

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSA 447
           ++  A RM+ +       + W A++S 
Sbjct: 248 DISNA-RMLFDKMPKRDRISWNAMISG 273


>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 173/551 (31%), Positives = 284/551 (51%), Gaps = 44/551 (7%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           LL+A ++L    +   LH ++LK GF ++ FV TAL+  Y K + +A A ++F E+PQ S
Sbjct: 52  LLKACANLPSIQHGTMLHGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRS 111

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ---LGMA 125
           VVSWN+++S Y +     +AL+L  E+        A +F S L+    L S +   LG +
Sbjct: 112 VVSWNAMVSAYSRRSSMDQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKS 171

Query: 126 IHSKIVKYSLER-GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
           IH  ++K  +    V +AN L+ MY +   +++A  VF  M +K IISW ++I    + G
Sbjct: 172 IHCCLIKLGIVYLEVSLANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIG 231

Query: 185 NLELAFGFLHRLPNP----DTISYNEVINGIAQF-------------------------- 214
           +   A+G  +++ +     D + +  +I+G  Q                           
Sbjct: 232 HAVEAYGLFYQMQHQSVGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVEN 291

Query: 215 ---------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
                    G++  A  I   +   +  SW S++ GYV+     EAL LF  M   D+  
Sbjct: 292 LLITMYAKCGNLTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRP 351

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           +  T +T++S  A L +L+ G  I   +   GL++   V ++L+ MYSKCG +  A  +F
Sbjct: 352 NGATLATVVSACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVF 411

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
             +  K+L  W +MI  YA +G   + I LF ++ T   + PD++ + +V  ACSH+ + 
Sbjct: 412 ERVTDKDLTVWTSMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGLV 471

Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
            + + +YF+SM KD+GI PTVEHC  +I L+G+ G++  A   I+ +       VW  LL
Sbjct: 472 EEGL-KYFKSMQKDFGITPTVEHCTCLIDLLGRVGQLDLALNAIQGMPPDVQAQVWGPLL 530

Query: 446 SASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505
           SA     ++++  ++   ++     S   YV++ NLYTS G W  A +MRN M  +GL K
Sbjct: 531 SACRIHGNVELGELATVRLLDSSPGSSGSYVLMANLYTSLGKWKEAHMMRNSMDGKGLVK 590

Query: 506 EAGCSWIEVEN 516
           E+G S +EV +
Sbjct: 591 ESGWSQVEVTD 601



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 186/408 (45%), Gaps = 46/408 (11%)

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
           S+ +WN +I     +G + + LN++  +  S ++ +  ++   L AC  L S+Q G  +H
Sbjct: 10  SLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTMLH 69

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
             ++K   +    +   L+DMY KC  V  A  VF EM  + ++SWN++++A +R  +++
Sbjct: 70  GHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSMD 129

Query: 188 LAFGFLHRL-------------------PNPDTISY------------------------ 204
            A   L  +                    N D+  +                        
Sbjct: 130 QALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEVSLA 189

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
           N ++    QF  +++A  +   M   +  SW +++ GYV      EA  LF +MQ + V 
Sbjct: 190 NSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVG 249

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
           +D   F  ++SG   +  L     +HS V+K G +    V + L+ MY+KCG +  A  +
Sbjct: 250 IDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSARRI 309

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
           F  +  K++++W +MI GY   G   + ++LF ++    D++P+  T   V++AC+  D+
Sbjct: 310 FDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRT-DIRPNGATLATVVSACA--DL 366

Query: 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
               + +  E      G++   +   S+I +  + G + +A+ +   +
Sbjct: 367 GSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERV 414



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 117/247 (47%), Gaps = 9/247 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  ++ A +DLG  +  Q++  YI  +G  S+  V T+L+  Y K  S+  A ++
Sbjct: 351 PNGATLATVVSACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREV 410

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGS 119
           F  +    +  W S+I+ Y   G   +A++LF ++  +E I  DA  +TS   AC   G 
Sbjct: 411 FERVTDKDLTVWTSMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGL 470

Query: 120 LQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAI-GVFGEMIDKDIISWNSVI 177
           ++ G+     + K + +   V    CLID+ G+ G ++ A+  + G   D     W  ++
Sbjct: 471 VEEGLKYFKSMQKDFGITPTVEHCTCLIDLLGRVGQLDLALNAIQGMPPDVQAQVWGPLL 530

Query: 178 AASARNGNLELAFGFLHRLPNP---DTISYNEVINGIAQFGDIEDAIMILSSMPSP---N 231
           +A   +GN+EL      RL +     + SY  + N     G  ++A M+ +SM       
Sbjct: 531 SACRIHGNVELGELATVRLLDSSPGSSGSYVLMANLYTSLGKWKEAHMMRNSMDGKGLVK 590

Query: 232 SSSWNSI 238
            S W+ +
Sbjct: 591 ESGWSQV 597


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 166/541 (30%), Positives = 288/541 (53%), Gaps = 52/541 (9%)

Query: 23  QQLHCYILKSGFLSN-VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           +++H +++++G   N V +   L+  Y K  ++ADA  +F  + +   VSWNSLISG  Q
Sbjct: 406 REVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQ 465

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           +     A   F  + R+      ++  S L++C  LG + LG  IH   +K  L+  V +
Sbjct: 466 NECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSV 525

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA---------SARNGNLELAFG- 191
           +N L+ +Y + G   + + VF  M + D +SWNSVI A          A    L++  G 
Sbjct: 526 SNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGG 585

Query: 192 -------FLHRLPNPDTISYNEVINGI-----------------------AQFGDIEDAI 221
                  F++ L    ++S +EV + I                        + G++ +  
Sbjct: 586 WGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECE 645

Query: 222 MILSSM-PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
            I + M  + +  SWNS+++GY++   + +A+ L   M  K   +D +TF+T+LS  A +
Sbjct: 646 KIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASV 705

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           + L  GM +H+C I+  L++ +VV SAL+DMYSKCG+++ A   F  +  +N+ +WN+MI
Sbjct: 706 ATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMI 765

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           +GYAR+G   K ++LF ++  +    PD VTF+ VL+ACSH     ++  E+F+SM++ Y
Sbjct: 766 SGYARHGHGEKALKLFTRM-MLDGQPPDHVTFVGVLSACSHVGF-VEEGFEHFKSMSEVY 823

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC-----SDLD 455
            + P VEH   M+ L+G+ G++      I  +      ++WR +L   GAC      + +
Sbjct: 824 RLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVL---GACCRANGRNTE 880

Query: 456 VARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           + R +A  +++LE  +   YV+L N+Y S   W+  +  R  M+E  ++KEAGCSW+ ++
Sbjct: 881 LGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMK 940

Query: 516 N 516
           +
Sbjct: 941 D 941



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 119/411 (28%), Positives = 198/411 (48%), Gaps = 55/411 (13%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           ++LH   +K GF+ N+F+S  L+  Y +I  L  A K+F E+   ++V+W  LISGY Q+
Sbjct: 91  RELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQN 150

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS--LQLGMAIHSKIVKYSLERGVV 140
           GK  +A   F ++ R+    + Y+F SAL AC + G    +LG+ IH  I K      VV
Sbjct: 151 GKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVV 210

Query: 141 IANCLIDMYGKC-GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL--- 196
           + N LI MYG C  S  DA  VF  +  ++ ISWNS+I+  +R G+   A+     +   
Sbjct: 211 VCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKE 270

Query: 197 -------PNP-----------------------------------DTISYNEVINGIAQF 214
                  PN                                    D    + +++G A+F
Sbjct: 271 GLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARF 330

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G  +DA  I   M   N  S N ++ G V + +   A  +F EM+   V ++  ++  +L
Sbjct: 331 GLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDL-VGINSDSYVVLL 389

Query: 275 SGIAGLSALTWGML----IHSCVIKQGL-DASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           S  +  S L  G      +H+ VI+ GL D  + + + L++MY+K G +  A S+F  + 
Sbjct: 390 SAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMV 449

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            K+ V+WN++I+G  +N       E F +++    + P + T ++ L++C+
Sbjct: 450 EKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSM-PSNFTLISTLSSCA 499



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 171/396 (43%), Gaps = 44/396 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + L   L + + LGW    +Q+HC  LK G  ++V VS AL+  Y +     +  K+
Sbjct: 486 PSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKV 545

Query: 61  FVEIPQPSVVSWNSLISGYVQS-GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F  +P+   VSWNS+I     S     +A+  F+++ R        +F + L+A   L  
Sbjct: 546 FSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSL 605

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIA 178
            ++   IH+ ++KY L     I N L+  YGKCG + +   +F  M + +D +SWNS+I+
Sbjct: 606 HEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMIS 665

Query: 179 ASARN----GNLELAFGFLHRLPNPDTISYNEVINGIA---------------------- 212
               N      ++L +  + +    D+ ++  +++  A                      
Sbjct: 666 GYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLES 725

Query: 213 -------------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                        + G I+ A      MP  N  SWNS+++GY       +AL LF  M 
Sbjct: 726 DVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMM 785

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
               P D  TF  +LS  + +  +  G     S      L   +   S ++D+  + G++
Sbjct: 786 LDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKL 845

Query: 319 -EIADSMFRSLCRKNLVTWNAMITGYAR-NGDLTKV 352
            E+ D +     + N++ W  ++    R NG  T++
Sbjct: 846 DEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTEL 881



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           TF ++++   G         +H   IK G   ++ +++ L+++Y + G +  A  +F  +
Sbjct: 73  TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEM 132

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR-DLQPDSVTFLNVLAACSHT 382
             +NLVTW  +I+GY +NG   +    F  +  VR    P+   F + L AC  +
Sbjct: 133 SNRNLVTWACLISGYTQNGKPDEACARFRDM--VRAGFIPNHYAFGSALRACQES 185


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 163/577 (28%), Positives = 288/577 (49%), Gaps = 72/577 (12%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP- 67
           LL+  S +   +  +QLH  IL++   S   +ST ++  Y  +N L D+  +F  +P P 
Sbjct: 11  LLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLST-ILSIYSNLNLLHDSLLIFNSLPSPP 69

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
           + ++W S+I  Y   G +  +L+ F+++  S  Y D   F S L +C  +  L+ G ++H
Sbjct: 70  TTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVH 129

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDA-------------------------IG-- 160
             I++  +   +   N L++MY K  S+E+                          +G  
Sbjct: 130 GCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSL 189

Query: 161 --VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQF 214
             VF  M  +DI+SWN+VI+ +A+NG  E A   +  + N    PD+ + + V+   A++
Sbjct: 190 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 249

Query: 215 GD-----------------------------------IEDAIMILSSMPSPNSSSWNSIL 239
            +                                   ++D+  +   +P  +  SWNSI+
Sbjct: 250 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 309

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            G V      E L  F +M    +  +  +FS+++   A L+ L  G  +H  +I+   D
Sbjct: 310 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 369

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            ++ +ASAL+DMY+KCG +  A  +F  +   ++V+W AMI GYA +G     I LF+++
Sbjct: 370 GNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRM 429

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           + V  ++P+ V F+ VL ACSH  +  D+  +YF SMT+DY I P +EH  ++  L+G+ 
Sbjct: 430 E-VEGVKPNYVAFMAVLTACSHAGL-VDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRV 487

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G +  A   I ++     G VW  LL+A     ++++A   + ++  ++  +   YV+L 
Sbjct: 488 GRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLS 547

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           N+Y++ G W  A  +R  MR++G++K+  CSWIE++N
Sbjct: 548 NIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKN 584



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      ++ A + L      +QLH YI++S F  NVF+++AL+  Y K  ++  A  +
Sbjct: 335 PNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWI 394

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++    +VSW ++I GY   G    A++LF  +E   +  +  +F + L AC   G +
Sbjct: 395 FDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLV 454

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
                  + + + Y +  G+     + D+ G+ G +E+A     +M I+     W++++A
Sbjct: 455 DEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLA 514

Query: 179 ASARNGNLELA 189
           A   + N+ELA
Sbjct: 515 ACRVHKNIELA 525


>gi|224103137|ref|XP_002312939.1| predicted protein [Populus trichocarpa]
 gi|222849347|gb|EEE86894.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 162/510 (31%), Positives = 274/510 (53%), Gaps = 48/510 (9%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           Y K   + +A +MF  +P+  VVSWN++++G++Q+G   +A+  F  +   +  A   + 
Sbjct: 103 YAKNGRMDEALRMFKLMPEGDVVSWNAIVTGFLQNGDVARAIEYFERMPERDA-ASLSAL 161

Query: 108 TSALAACGQLGSL---------------QLGMAIHSKIVKYSLE---------------- 136
            S L   G+L                   L  A ++ I  Y                   
Sbjct: 162 VSGLIRNGELDEAARVVVRFERDGGRKENLLQAYNTLIAGYGRRDRVDEARKLFDQIPFC 221

Query: 137 ------------RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
                       R VV  N +I  Y K G++  A  +F +M+++D ISWN++I+      
Sbjct: 222 DGKGKGGDGRFGRNVVSWNTMIMCYVKAGNIVFARELFDQMMERDTISWNTMISGYVNML 281

Query: 185 NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
           +++ A      +PNPD  S+N++I G AQ GD++    +   MP  N  SWNS++TGY  
Sbjct: 282 DMDEASRLFCEMPNPDIFSWNKMIAGHAQIGDLDRVNDLFGRMPQKNLVSWNSVITGYEK 341

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV 304
            +    A+ +F +MQ +    D +T S++LS  AG+  L  GM IH  V K  +   + +
Sbjct: 342 NDDYIGAIKIFIQMQVEGEKPDRHTLSSVLSVSAGIVDLQLGMQIHQLVTKTVI-PDVPI 400

Query: 305 ASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363
            +AL+ MYS+CG +  A ++F  +  +K +++WNAMI GYA +G   + +E+F+ +K+  
Sbjct: 401 NNALITMYSRCGAIIEAGTIFDEVKLQKEVISWNAMIGGYASHGYAVEALEVFKLMKSF- 459

Query: 364 DLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW 423
           D++P  +TF++VL AC+H  +  ++  E FESM  ++GI+P+VEH  S++ +M + G++ 
Sbjct: 460 DVRPTHITFISVLHACAHAGL-VEEGREIFESMADEFGIEPSVEHYASLVDIMSRHGQLE 518

Query: 424 RAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483
           +A  +I  + F     VW ALLSA+   + ++VAR++A  +I+LE DS   YV+L N+Y 
Sbjct: 519 QALDLINSMPFEPDKAVWGALLSAAKVHNKIEVARVAAEALIRLEPDSSAPYVLLYNMYA 578

Query: 484 SHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
             G WD A+ +R  M    ++K+A  SW++
Sbjct: 579 DVGQWDSAAEVRIMMERSNIKKQAAYSWVD 608



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 103/471 (21%), Positives = 215/471 (45%), Gaps = 69/471 (14%)

Query: 49  RKINSLA------DAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA 102
           +KI++LA      +A  +F ++ + + VSWN++I  YV+  +  KA  LF E+ + +I +
Sbjct: 2   KKISNLAKNGRIDEARALFDQMEETNTVSWNAIIRAYVKRREIAKARKLFDEMPQRDIVS 61

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
                 S   +C  +  L+ G  +  ++     ER +V  N +I  Y K G +++A+ +F
Sbjct: 62  -WNLMISGYVSCHGIRFLKEGRNLFDRMP----ERDIVSWNTMISGYAKNGRMDEALRMF 116

Query: 163 GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIM 222
             M + D++SWN+++    +NG++  A  +  R+P  D  S + +++G+ + G++++A  
Sbjct: 117 KLMPEGDVVSWNAIVTGFLQNGDVARAIEYFERMPERDAASLSALVSGLIRNGELDEAAR 176

Query: 223 ILSSMPSPNS------SSWNSILTGYVNRNRVPEALHLFGEM------------------ 258
           ++               ++N+++ GY  R+RV EA  LF ++                  
Sbjct: 177 VVVRFERDGGRKENLLQAYNTLIAGYGRRDRVDEARKLFDQIPFCDGKGKGGDGRFGRNV 236

Query: 259 -----------QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS------ 301
                      ++ ++      F  M+        ++W  +I   V    +D +      
Sbjct: 237 VSWNTMIMCYVKAGNIVFARELFDQMME----RDTISWNTMISGYVNMLDMDEASRLFCE 292

Query: 302 -----IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
                I   + ++  +++ G ++  + +F  + +KNLV+WN++ITGY +N D    I++F
Sbjct: 293 MPNPDIFSWNKMIAGHAQIGDLDRVNDLFGRMPQKNLVSWNSVITGYEKNDDYIGAIKIF 352

Query: 357 EQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLM 416
            Q++ V   +PD  T  +VL+  +   +      +  + +TK   + P V    ++I + 
Sbjct: 353 IQMQ-VEGEKPDRHTLSSVLSVSAGI-VDLQLGMQIHQLVTK--TVIPDVPINNALITMY 408

Query: 417 GQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
            + G +  A  +  E+      + W A++    +        + A EV KL
Sbjct: 409 SRCGAIIEAGTIFDEVKLQKEVISWNAMIGGYASHG----YAVEALEVFKL 455



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 148/321 (46%), Gaps = 43/321 (13%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           ++F    ++  + +I  L   + +F  +PQ ++VSWNS+I+GY ++  Y  A+ +F++++
Sbjct: 297 DIFSWNKMIAGHAQIGDLDRVNDLFGRMPQKNLVSWNSVITGYEKNDDYIGAIKIFIQMQ 356

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
                 D ++ +S L+    +  LQLGM IH  + K  +   V I N LI MY +CG++ 
Sbjct: 357 VEGEKPDRHTLSSVLSVSAGIVDLQLGMQIHQLVTKTVIP-DVPINNALITMYSRCGAII 415

Query: 157 DAIGVFGEM-IDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGI 211
           +A  +F E+ + K++ISWN++I   A +G    A      + +    P  I++  V++  
Sbjct: 416 EAGTIFDEVKLQKEVISWNAMIGGYASHGYAVEALEVFKLMKSFDVRPTHITFISVLHAC 475

Query: 212 AQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
           A  G +E+   I  SM       P+   + S++       ++ +AL L   M     P +
Sbjct: 476 AHAGLVEEGREIFESMADEFGIEPSVEHYASLVDIMSRHGQLEQALDLINSM-----PFE 530

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL--------------DMY 312
                             WG L+ +  +   ++ + V A AL+              +MY
Sbjct: 531 P-------------DKAVWGALLSAAKVHNKIEVARVAAEALIRLEPDSSAPYVLLYNMY 577

Query: 313 SKCGQVEIADSMFRSLCRKNL 333
           +  GQ + A  +   + R N+
Sbjct: 578 ADVGQWDSAAEVRIMMERSNI 598



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 150/320 (46%), Gaps = 26/320 (8%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV     ++  Y K  ++  A ++F ++ +   +SWN++ISGYV      +A  LF E+ 
Sbjct: 235 NVVSWNTMIMCYVKAGNIVFARELFDQMMERDTISWNTMISGYVNMLDMDEASRLFCEMP 294

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
             +I    +S+   +A   Q+G L     +  ++ + +L    V  N +I  Y K     
Sbjct: 295 NPDI----FSWNKMIAGHAQIGDLDRVNDLFGRMPQKNL----VSWNSVITGYEKNDDYI 346

Query: 157 DAIGVF------GEMIDKDIISWNSVIAASARNGNLELAFGF-LHRLPN----PDTISYN 205
            AI +F      GE  D+  +S  SV++ SA  G ++L  G  +H+L      PD    N
Sbjct: 347 GAIKIFIQMQVEGEKPDRHTLS--SVLSVSA--GIVDLQLGMQIHQLVTKTVIPDVPINN 402

Query: 206 EVINGIAQFGDIEDAIMILSSMP-SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
            +I   ++ G I +A  I   +       SWN+++ GY +     EAL +F  M+S DV 
Sbjct: 403 ALITMYSRCGAIIEAGTIFDEVKLQKEVISWNAMIGGYASHGYAVEALEVFKLMKSFDVR 462

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADS 323
               TF ++L   A    +  G  I   +  + G++ S+   ++L+D+ S+ GQ+E A  
Sbjct: 463 PTHITFISVLHACAHAGLVEEGREIFESMADEFGIEPSVEHYASLVDIMSRHGQLEQALD 522

Query: 324 MFRSLC-RKNLVTWNAMITG 342
           +  S+    +   W A+++ 
Sbjct: 523 LINSMPFEPDKAVWGALLSA 542


>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
          Length = 799

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 153/494 (30%), Positives = 260/494 (52%), Gaps = 27/494 (5%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH + +K+ F S+  V TA++  Y K NSL DA + F  +P  +V + N+++ G    
Sbjct: 270 RQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG---- 325

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
                   LF  + RS I  D  S +   +AC +      G  +H   +K          
Sbjct: 326 --------LF--MIRSSIRFDVVSLSGVFSACAETKGYFPGQQVHCLAIK---------- 365

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
             ++D+YGKC ++ +A  +F  M  KD +SWN++IAA  +NG+ +      + +   D  
Sbjct: 366 -SVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFDAF 424

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             + V++   + G I++A  +   +      SWN+IL+G+        A   F EM    
Sbjct: 425 VASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEAAQKFFSEMLDMG 484

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +  D +TF+T+L   A L+ +  G  IH  +IKQ +     ++S L+DMY+KCG +  + 
Sbjct: 485 LKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSL 544

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F  + +++ V+WNAMI GYA +G   + + +FE+++   ++ P+  TF+ VL ACSH 
Sbjct: 545 LVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQK-ENVVPNHATFVAVLRACSHV 603

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            + FD    YF  MT  Y ++P +EH   M+ ++G+      A + I  + F +  V+W+
Sbjct: 604 GL-FDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWK 662

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
            LLS      D+++A ++A+ V+ L+ D   VY++L N+Y   G W   S  R  +++  
Sbjct: 663 TLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGR 722

Query: 503 LRKEAGCSWIEVEN 516
           L+KE GCSWIE ++
Sbjct: 723 LKKEPGCSWIEAQS 736



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 155/351 (44%), Gaps = 64/351 (18%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           Y     ++ A  +F  +P P VVSWN+L+SGY Q G ++++++LFVE+ R  +  D  +F
Sbjct: 93  YSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTF 152

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
              L +C  L  L LG+ +H+  VK  LE  V   + L+DMYGKC S++DA+  F  M +
Sbjct: 153 AVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPE 212

Query: 168 KDIISWNSVIAASARNGN----LEL----------------AFGF--------------- 192
           ++ +SW S IA   +N      LEL                A  F               
Sbjct: 213 RNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQL 272

Query: 193 -LHRLPNP---DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV 248
             H + N    D +    +++  A+   + DA      +P+    + N+++ G       
Sbjct: 273 HAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG------- 325

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
                LF  M    +  D  + S + S  A       G  +H   IK           ++
Sbjct: 326 -----LF--MIRSSIRFDVVSLSGVFSACAETKGYFPGQQVHCLAIK-----------SV 367

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           LD+Y KC  +  A  +F+ + +K+ V+WNA+I    +NG     I  F ++
Sbjct: 368 LDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEM 418



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 93/165 (56%)

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           +P  DT+S+N ++   +  GDI  A+ +   MP P+  SWN++++GY  R    E++ LF
Sbjct: 78  MPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLF 137

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
            EM  + V  D  TF+ +L   + L  L+ G+ +H+  +K GL+  +   SAL+DMY KC
Sbjct: 138 VEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKC 197

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
             ++ A   F  +  +N V+W + I G  +N    + +ELF +++
Sbjct: 198 RSLDDALCFFYGMPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQ 242



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 91/191 (47%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    +L   ++L      +Q+H  I+K   L + ++S+ L+  Y K   + D+  +
Sbjct: 487 PDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLV 546

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ +   VSWN++I GY   G   +AL +F  +++  +  +  +F + L AC  +G  
Sbjct: 547 FEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLF 606

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G    H     Y LE  +    C++D+ G+    ++A+     M    D + W ++++
Sbjct: 607 DDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLS 666

Query: 179 ASARNGNLELA 189
                 ++E+A
Sbjct: 667 ICKIRQDVEIA 677



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           + +L  YS  G +  A ++F  +   ++V+WNA+++GY + G   + ++LF ++   R +
Sbjct: 87  NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMAR-RGV 145

Query: 366 QPDSVTFLNVLAACS 380
            PD  TF  +L +CS
Sbjct: 146 SPDRTTFAVLLKSCS 160



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 7/112 (6%)

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           ++  G   +  V++ LL MY++C     A  +F ++ R++ V+WN M+T Y+  GD++  
Sbjct: 43  MVVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTA 102

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           + LF+ +       PD V++ N L +       F +  + F  M +  G+ P
Sbjct: 103 VALFDGMP-----DPDVVSW-NALVSGYCQRGMFQESVDLFVEMAR-RGVSP 147


>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 709

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 153/527 (29%), Positives = 279/527 (52%), Gaps = 15/527 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++Y    +++A S +        +H   L SGF SN+FV  +L+  Y     +  A ++
Sbjct: 182 PDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQV 241

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + + SVVSWN++ISG+ Q+G+  +AL +F  +  + +  D+ +  SAL +CG L  L
Sbjct: 242 FNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKEL 301

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG+ +H  + K  L+  + + N L+DMY +CG +++A  VF E  +KD+I+W S+I   
Sbjct: 302 ELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGIDEASLVFAETKEKDVITWTSMINGY 361

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQF-------GDIEDAIMILSSMPS 229
             NGN + A      +      P+ ++   +++  A           +  +  + +    
Sbjct: 362 IMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCYMYAKCNAVSYSFQVFAKTSK 421

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
             +  WN++L+G ++     EA+ LF  M  ++V  +  TF++++   A L+ L   M +
Sbjct: 422 KRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNL 481

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARNG 347
           HS +++ G  + I V + L+DMYSKCG ++ A  +F  +    K+++ W+ +I GY  +G
Sbjct: 482 HSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHG 541

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407
                + LF Q+     +QP+ +TF +VL ACSH  +  D ++  F+ M ++Y   P   
Sbjct: 542 HGETAVLLFNQM-VHSGMQPNEITFTSVLHACSHRGLVDDGLT-LFKYMIENYPSSPLPN 599

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
           H   ++ L+G+ G +  A  +I+ + F     +W ALL A     ++++  ++A  + +L
Sbjct: 600 HYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLGACLIHQNVELGEVAAERLFEL 659

Query: 468 EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           E +S   Y++L N+Y + G W  A  +R+ M + GLRK    S + V
Sbjct: 660 EPESTGNYILLANIYAAVGRWKDAENVRHIMSKIGLRKTPAQSSVGV 706



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 118/499 (23%), Positives = 210/499 (42%), Gaps = 59/499 (11%)

Query: 25  LHCYILKSGFLSN---VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           LH + + SG L +   + + + L   Y     +  A K+F ++  PS+  WN++I  YV 
Sbjct: 101 LHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVD 160

Query: 82  SGKYRKALNLFVELERS-EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
            G +  AL +F  +  S + + D Y+F   + AC  +  L +G+ IH + +       + 
Sbjct: 161 KGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMF 220

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-- 198
           + N L+ MY  CG V  A  VF  M+ + ++SWN++I+   +NG  E A    + + +  
Sbjct: 221 VQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDAR 280

Query: 199 --PDTISYNEVINGIAQFGDIEDAI----MILSSMPSPNSSSWNSILTGYVNRNRVPEAL 252
             PD+ +    +       ++E  I    ++  +         N+++  Y     + EA 
Sbjct: 281 VEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGIDEAS 340

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSG------IAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
            +F E + KDV     T+++M++G           AL   M +   V      AS++ A 
Sbjct: 341 LVFAETKEKDV----ITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSAC 396

Query: 307 A-LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           A L  MY+KC  V  +  +F    +K  V WNA+++G   N    + + LF+ +  + ++
Sbjct: 397 ASLCYMYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGLIHNELAREAVGLFKSM-LIEEV 455

Query: 366 QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425
           + +  TF +V+ A                     Y I             +    +V   
Sbjct: 456 EANHATFNSVIPA---------------------YAI-------------LADLKQVMNL 481

Query: 426 QRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485
              +   GF S   V   L+     C  LD A     E+   E D   V+ +L   Y  H
Sbjct: 482 HSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDI-IVWSVLIAGYGMH 540

Query: 486 GNWDVASVMRNFMRERGLR 504
           G+ + A ++ N M   G++
Sbjct: 541 GHGETAVLLFNQMVHSGMQ 559



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 3/125 (2%)

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS---IVVASALLDMYSKC 315
           +SK +  + +   ++L   A   +L    ++H   I  GL  S   I + S L   Y+ C
Sbjct: 71  KSKSLIANVHRCDSLLRHYAATRSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFC 130

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G V +A  +F  L   +L  WNA+I  Y   G     + +F+ +       PD  TF  V
Sbjct: 131 GCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLV 190

Query: 376 LAACS 380
           + ACS
Sbjct: 191 IKACS 195


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 157/504 (31%), Positives = 264/504 (52%), Gaps = 40/504 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK--MFVEIPQPSVVSWNSLISGYV 80
           +Q+H +I + G     FV   L+    K++   D +   +F ++  P+   W +LI GY 
Sbjct: 56  KQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYA 115

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK-IVKYSLERGV 139
             G + +++ L+  + R  I   +++FT+ L AC     + LG  +H++ I+       +
Sbjct: 116 LQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDL 175

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            + N LIDMY KCG +     VF EM+D+D+ISW S+I A A+                 
Sbjct: 176 YVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAK----------------- 218

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                          G++E A  +   +P  +  +W +++TGY    R  EAL +F  MQ
Sbjct: 219 --------------VGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQ 264

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL--DASIVVASALLDMYSKCGQ 317
           +  V  DE T   ++S  A L A  +   +     + G    +++VV SAL+DMY+KCG 
Sbjct: 265 AAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGS 324

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVL 376
           VE A  +F  +  +N+ ++++MI G+A +G     +ELF E LKT  +++P+ VTF+ VL
Sbjct: 325 VEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKT--EIKPNRVTFIGVL 382

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
            ACSH  +  ++  + F  M + +G+ P+ +H   M+ L+G+ G +  A  +++ +    
Sbjct: 383 TACSHAGM-VEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNP 441

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
           +G VW ALL A     + D+A+I+A+ + +LE +    Y++L N+Y S G WD  S +R 
Sbjct: 442 HGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRK 501

Query: 497 FMRERGLRKEAGCSWIEVENVAAH 520
            MR +GL+K  GCSW+E +    H
Sbjct: 502 LMRAKGLKKNPGCSWVEGKKGIIH 525



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 3/112 (2%)

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK--CGQVEIADSMFRSL 328
           S ++S + G + +     +H+ + ++GL+    V + LL   +K           +F+ +
Sbjct: 40  SRLVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQV 99

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
              N   W A+I GYA  G   + + L+  ++  + + P S TF  +L ACS
Sbjct: 100 EYPNPFLWTALIRGYALQGPFMESVLLYNSMRR-QGIGPVSFTFTALLKACS 150


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 159/554 (28%), Positives = 286/554 (51%), Gaps = 43/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y    +L+  + +      +++H ++++ GF S+V V  AL+  Y K   +++A  +
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P+   +SWN++ISGY ++G   + L LF  +    +  D  + T+  +AC  L + 
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNE 315

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN------ 174
           +LG  +H  +VK      + + N LI MY   G +E+A  VF  M  KD++SW       
Sbjct: 316 RLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASL 375

Query: 175 -----------------------------SVIAASARNGNLELAFGFLHRLPNPDTISY- 204
                                        SV++A A  G+L+L             +S+ 
Sbjct: 376 VSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHV 435

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+  ++   +++A+ +  ++   N  SW S++ G    NR  EAL  F +M+  
Sbjct: 436 IVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES 495

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
             P +  T  ++LS  A + AL  G  IH+  ++ G+     + +A+LDMY +CG+   A
Sbjct: 496 MKP-NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPA 554

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            + F S  +K++  WN ++TGYA+ G     +ELF+++  + ++ PD +TF+++L ACS 
Sbjct: 555 LNQFNSQ-KKDVTAWNILLTGYAQQGQAKLAVELFDKMLEL-EIHPDEITFISLLCACSK 612

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           + +  + + EYF  M   Y + P ++H   ++ ++G+ G++  A   I+++       +W
Sbjct: 613 SGMVTEGL-EYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIW 671

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL+A     ++++  I+A  V + +  S   Y++LCNLY   GNWD  S +R+ MRER
Sbjct: 672 GALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRER 731

Query: 502 GLRKEAGCSWIEVE 515
           GL  + GCSW+E++
Sbjct: 732 GLSADPGCSWVEIK 745



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 198/383 (51%), Gaps = 43/383 (11%)

Query: 38  VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER 97
           V +  AL+  + +  +L DA  +F ++ +  V SWN L+ GY ++G + +ALNL+  +  
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 98  SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED 157
           +EI  + Y+F S L  C  +  +  G  IH+ ++++  E  V + N LI MY KCG + +
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251

Query: 158 AIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLP-NPDTISY-------- 204
           A  +F +M  +D ISWN++I+    NG     LEL F  +  L  +PD I+         
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLEL-FSMMRELSVDPDLITMTTVASACE 310

Query: 205 ---------------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
                                      N +I   +  G +E+A  + S M S +  SW +
Sbjct: 311 LLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTA 370

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           ++   V+     +A+  +  M+ + +  DE T  ++LS  A +  L  G+ +H   IK G
Sbjct: 371 MIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTG 430

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
           L + ++V+++L+DMYSKC  V+ A  +FR++  KN+V+W ++I G   N    + +  F 
Sbjct: 431 LVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFR 490

Query: 358 QLKTVRDLQPDSVTFLNVLAACS 380
           Q+K    ++P+SVT ++VL+AC+
Sbjct: 491 QMK--ESMKPNSVTLISVLSACA 511



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 101/179 (56%), Gaps = 1/179 (0%)

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
           N +++   +FG++ DA  +   M   +  SWN ++ GY       EAL+L+  M   ++ 
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
            + YTF ++L   AG+S +  G  IH+ VI+ G ++ + V +AL+ MY KCG +  A  +
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           F  + +++ ++WNAMI+GY  NG   + +ELF  ++ +  + PD +T   V +AC   D
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMREL-SVDPDLITMTTVASACELLD 313



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 75/147 (51%), Gaps = 6/147 (4%)

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
           + + +ALL M+ + G +  A  +F  +  +++ +WN ++ GYA+ G   + + L+ ++  
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 362 VRDLQPDSVTFLNVLAACSH-TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
             +++P+  TF +VL  C+  +DI   K      +    +G +  V+   ++I +  + G
Sbjct: 192 A-EIRPNVYTFPSVLKTCAGVSDIARGK---EIHAHVIRFGFESDVDVGNALITMYVKCG 247

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSA 447
           ++  A RM+ +       + W A++S 
Sbjct: 248 DISNA-RMLFDKMPKRDRISWNAMISG 273


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 159/553 (28%), Positives = 279/553 (50%), Gaps = 39/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +    +L A +  G     Q++H   +K G  S+VFV  +LM  Y K   + DA  +
Sbjct: 199 PNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSV 258

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    +VSWN+L++G   +    +AL LF E   +       ++ + +  C  L  L
Sbjct: 259 FNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQL 318

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI-DKDIISWNSVIAA 179
            L   +HS ++K+       +   L D Y KCG + DA+ +F      ++++SW ++I+ 
Sbjct: 319 ALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISG 378

Query: 180 SARNGNLELAFGFLHRLPN----PDTISYNEVING------------------------- 210
             +NG++ LA     R+      P+  +Y+ ++                           
Sbjct: 379 CIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVG 438

Query: 211 ------IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
                  ++FG  EDA+ I   +   +  +W+++L+ +        A +LF +M  + + 
Sbjct: 439 TALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIK 498

Query: 265 MDEYTFSTMLSGIAGLSA-LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
            +E+T S+++   A  SA +  G   H+  IK     +I V+SAL+ MYS+ G ++ A  
Sbjct: 499 PNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQI 558

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F     ++LV+WN+MI+GYA++G   K IE F Q++    +Q D VTFL V+  C+H  
Sbjct: 559 VFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEA-SGIQMDGVTFLAVIMGCTHNG 617

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
           +  +   +YF+SM +D+ I PT+EH   M+ L  + G++     +IR++ F +  +VWR 
Sbjct: 618 LVVEG-QQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRT 676

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           LL A     ++++ + SA +++ LE      YV+L N+Y + G W     +R  M  R +
Sbjct: 677 LLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKV 736

Query: 504 RKEAGCSWIEVEN 516
           +KEAGCSWI+++N
Sbjct: 737 KKEAGCSWIQIKN 749



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/503 (26%), Positives = 239/503 (47%), Gaps = 52/503 (10%)

Query: 23  QQLHCYILKSGF-LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           +QLHC  +K G     V   T+L+  Y K  S+ +  ++F  +P+ +VV+W SL++G   
Sbjct: 119 EQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAH 178

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           +  + + + LF  +    I+ + ++F S L+A    G+L LG  +H++ VK+     V +
Sbjct: 179 AQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFV 238

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR----LP 197
            N L++MY KCG VEDA  VF  M  +D++SWN+++A    N     A    H     + 
Sbjct: 239 CNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMG 298

Query: 198 NPDTISYNEVI-----------------------------------NGIAQFGDIEDAIM 222
                +Y  VI                                   +  ++ G++ DA+ 
Sbjct: 299 KMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALN 358

Query: 223 ILS-SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           I S +  S N  SW +I++G +    +P A+ LF  M+   V  +E+T+S ML   A LS
Sbjct: 359 IFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLK--ASLS 416

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L     IH+ VIK        V +ALL  YSK G  E A S+F+ + +K++V W+AM++
Sbjct: 417 ILP--PQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLS 474

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            +A+ GD      LF ++  ++ ++P+  T  +V+ AC+      D+    F +++  Y 
Sbjct: 475 CHAQAGDCEGATYLFNKM-AIQGIKPNEFTISSVIDACACPSAGVDQ-GRQFHAISIKYR 532

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG----ACSDLDVA 457
               +    +++ +  +KG +  AQ ++ E       V W +++S       +   ++  
Sbjct: 533 YHDAICVSSALVSMYSRKGNIDSAQ-IVFERQTDRDLVSWNSMISGYAQHGYSMKAIETF 591

Query: 458 RISAAEVIKLEGDSDYVYVMLCN 480
           R   A  I+++G +    +M C 
Sbjct: 592 RQMEASGIQMDGVTFLAVIMGCT 614



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 168/358 (46%), Gaps = 43/358 (12%)

Query: 63  EIPQ-PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
           EIP+  + V  N ++  Y + G   + L+ F    R  +  D+ + +  L AC  +    
Sbjct: 57  EIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRV 116

Query: 122 LGMAIHSKIVKYSLERGVVIA-NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           LG  +H   VK   +RG V A   L+DMY KCGSV + I VF  M  K++++W S++   
Sbjct: 117 LGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGC 176

Query: 181 ARNGNLELAFGFLHRL------PNPDTISY------------------------------ 204
           A             R+      PNP T +                               
Sbjct: 177 AHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSV 236

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N ++N  A+ G +EDA  + + M + +  SWN+++ G        EAL LF E ++ 
Sbjct: 237 FVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRAT 296

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
              M + T++T++   A L  L     +HSCV+K G   +  V +AL D YSKCG++  A
Sbjct: 297 MGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADA 356

Query: 322 DSMFR-SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            ++F  +   +N+V+W A+I+G  +NGD+   + LF +++  R + P+  T+  +L A
Sbjct: 357 LNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDR-VMPNEFTYSAMLKA 413


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 171/556 (30%), Positives = 273/556 (49%), Gaps = 46/556 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y +  +L+  + LG     + +H  + K GF S   V  ALM FY K N   DA  +
Sbjct: 194 PDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILV 253

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE--LERSEIYADAYSFTSALAACGQLG 118
           F  +P   V+SWNS+ISG   +G Y KA+ LFV   LE  E+  D+ +  S L AC +L 
Sbjct: 254 FDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEEL--DSATLLSVLPACAELH 311

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            L LG  +H   VK        +AN L+DMY  C        +F  M+ K+++SW ++I 
Sbjct: 312 LLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMIT 371

Query: 179 ASARNGNLELAFGF-------------------LHRLPNPDTISYNEVINGIA------- 212
           +  R G  +   G                    LH     + + + + ++G A       
Sbjct: 372 SYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEK 431

Query: 213 -------------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                        + G++E+A +I   + S +  SWN+++ GY   N   EA  LF EM 
Sbjct: 432 VLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEML 491

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            +  P +  T + +L   A LS+L  G  +H+  +++G      VA+AL+DMY KCG + 
Sbjct: 492 LQLRP-NAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALL 550

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           +A  +F  L  KNL++W  M+ GY  +G     I LFEQ++ V  + PD+ +F  +L AC
Sbjct: 551 LARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMR-VSGIAPDAASFSAILYAC 609

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH+ +  D+   +F++M K++ I+P ++H   M+ L+   G +  A   I  +       
Sbjct: 610 SHSGLR-DEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSS 668

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W +LL       ++ +A   A  V +LE ++   YV+L N+Y     W+    ++N + 
Sbjct: 669 IWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIG 728

Query: 500 ERGLRKEAGCSWIEVE 515
            RGLR+  GCSWIE +
Sbjct: 729 GRGLRENTGCSWIEAK 744



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 173/377 (45%), Gaps = 42/377 (11%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVS-WNSLISGYVQSGKYRKALNLFVELERSEIYA 102
           L+  Y K   L +A ++F E+PQ S V  W +L+SGY ++G  R+ + LF ++    +  
Sbjct: 135 LVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRP 194

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
           DAY+ +  L     LGS++ G  +H  + K        + N L+  Y K    +DAI VF
Sbjct: 195 DAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVF 254

Query: 163 GEMIDKDIISWNSVIAASARNG------------------------------NLELAFGF 192
             M  +D+ISWNS+I+    NG                                EL   F
Sbjct: 255 DGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLF 314

Query: 193 LHRLPNPDTISY---------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYV 243
           L R+ +  ++           N +++  +   D      I  +M   N  SW +++T Y 
Sbjct: 315 LGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYT 374

Query: 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV 303
                 +   LF EM  +    D +  ++ L   AG   L  G  +H   I+ G++  + 
Sbjct: 375 RAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLA 434

Query: 304 VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363
           V +AL++MY KCG +E A  +F  +  K++++WN +I GY+RN    +   LF ++  + 
Sbjct: 435 VTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEM--LL 492

Query: 364 DLQPDSVTFLNVLAACS 380
            L+P++VT   +L A +
Sbjct: 493 QLRPNAVTMTCILPAAA 509



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 125/253 (49%), Gaps = 12/253 (4%)

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
           N  I    + G +E+A+G+ G     D  S+ +V+   +   +LE      H L    ++
Sbjct: 65  NLHIQRLCRSGDLEEALGLLGS-DGVDDRSYGAVLQLCSEVRSLE-GGKRAHFLVRASSL 122

Query: 203 SYNEVINGIAQ--------FGDIEDAIMILSSMPS-PNSSSWNSILTGYVNRNRVPEALH 253
             + + N + Q         GD+E+A  +   MP   +   W ++++GY     + E + 
Sbjct: 123 GRDGMDNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVL 182

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
           LF +M    V  D YT S +L  IAGL ++  G ++H  + K G  +   V +AL+  Y+
Sbjct: 183 LFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYA 242

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           K  + + A  +F  +  +++++WN+MI+G   NG   K IELF ++  +   + DS T L
Sbjct: 243 KSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRM-WLEGEELDSATLL 301

Query: 374 NVLAACSHTDIPF 386
           +VL AC+   + F
Sbjct: 302 SVLPACAELHLLF 314


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 157/475 (33%), Positives = 249/475 (52%), Gaps = 41/475 (8%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
            ALM  Y + + + +A KMF ++PQ  VVSWN+++SGY + G   +A  LF         
Sbjct: 266 NALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF--------- 316

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
                                           +  R V     ++  Y + G +E+A  V
Sbjct: 317 ------------------------------DVAPIRDVFTWTAIVSGYAQNGMLEEAKRV 346

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F  M DK+ +SWN+++AA  +   +E A      +P  +  S+N ++ G AQ G +++A 
Sbjct: 347 FDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEAR 406

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            I   MP  ++ SW ++L  Y       E L LF EM      ++   F+ +LS  A ++
Sbjct: 407 AIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIA 466

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL  GM +HS +IK G      V +ALL MY KCG +E A S F  +  +++V+WN MI 
Sbjct: 467 ALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIA 526

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYAR+G   + +E+F+ ++     +PD +T + VLAACSH+ +  +K   YF SM +D+G
Sbjct: 527 GYARHGFGKEALEVFDTMRKT-STKPDDITLVGVLAACSHSGL-VEKGISYFYSMHRDFG 584

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           +    EH   MI L+G+ G +  A  +++++ F     +W ALL AS    + ++ R +A
Sbjct: 585 VATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAA 644

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++ +LE ++  +YV+L N+Y S G W     MR+ M ERG++K  G SWIEV+N
Sbjct: 645 EKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQN 699



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 167/359 (46%), Gaps = 75/359 (20%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           +   + DA ++F  +P+ S  ++N++++GY  +G+  +AL+ F  + R     D++S+  
Sbjct: 119 RAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRP----DSFSY-- 172

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
                                            N L+   G   S+ D   +F EM  KD
Sbjct: 173 ---------------------------------NTLLHALGVSSSLADVRALFDEMPVKD 199

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
            +S+N +I++ A +G + LA  +    P  D +S+N ++    + G I++A  +  S   
Sbjct: 200 SVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTE 259

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL------ 283
            ++ SWN+++ GYV R+++ EA  +F +M  +DV     +++TM+SG A    +      
Sbjct: 260 WDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDV----VSWNTMVSGYARRGDMAEARRL 315

Query: 284 ----------TW----------GMLIHSCVIKQGL-DASIVVASALLDMYSKCGQVEIAD 322
                     TW          GML  +  +   + D + V  +A++  Y +   +E A 
Sbjct: 316 FDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAK 375

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            +F ++  +N+ +WN M+TGYA+ G L +   +F  +      Q D+V++  +LAA S 
Sbjct: 376 ELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMP-----QKDAVSWAAMLAAYSQ 429



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 124/256 (48%), Gaps = 16/256 (6%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV     ++  Y +   L +A  +F  +PQ   VSW ++++ Y Q G   + L LF E+ 
Sbjct: 385 NVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMG 444

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           R   + +  +F   L+ C  + +L+ GM +HS+++K     G  + N L+ MY KCGS+E
Sbjct: 445 RCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSME 504

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLPNPDTISYNEVINGIA 212
           +A   F EM ++D++SWN++IA  AR+G     LE+          PD I+   V+   +
Sbjct: 505 EAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACS 564

Query: 213 QFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
             G +E  I    SM      +     +  ++       R+ EA++L      KD+P + 
Sbjct: 565 HSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLM-----KDMPFE- 618

Query: 268 YTFSTMLSGIAGLSAL 283
              STM   + G S +
Sbjct: 619 -PDSTMWGALLGASRI 633



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 155/364 (42%), Gaps = 71/364 (19%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA- 102
           ++  Y     L  A   F  IP+P   S+N+L+     S        LF E+   +  + 
Sbjct: 144 MLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSY 203

Query: 103 --------------------------DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE 136
                                     DA S+   LAA  + G +Q    +     ++   
Sbjct: 204 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWD-- 261

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196
              +  N L+  Y +   +E+A  +F +M  +D++SWN++++  AR G++  A       
Sbjct: 262 --AISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVA 319

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
           P  D  ++  +++G AQ G +E+A  +  +MP  N+ SWN+++  YV R  + EA  LF 
Sbjct: 320 PIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFD 379

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
            M  ++V     +++TML+G                                   Y++ G
Sbjct: 380 AMPCRNVA----SWNTMLTG-----------------------------------YAQAG 400

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            ++ A ++F  + +K+ V+W AM+  Y++ G   + ++LF+++    +    S  F  VL
Sbjct: 401 MLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSA-FACVL 459

Query: 377 AACS 380
           + C+
Sbjct: 460 STCA 463



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QLH  ++K+G+    FV  AL+  Y K  S+ +AH  F E+ +  VVSWN++I+GY + G
Sbjct: 473 QLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHG 532

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA- 142
             ++AL +F  + ++    D  +    LAAC   G ++ G++       YS+ R   +A 
Sbjct: 533 FGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYF-----YSMHRDFGVAT 587

Query: 143 -----NCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLEL 188
                 C+ID+ G+ G +++A+ +  +M  + D   W +++ AS  + N EL
Sbjct: 588 KPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSEL 639


>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 163/533 (30%), Positives = 277/533 (51%), Gaps = 37/533 (6%)

Query: 23  QQLHCYILKSGFLSNVFVS-TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
            Q+H  ++ SG L     +  A+       +S+  A  +F  + +P     N+++  YV 
Sbjct: 76  NQIHTQLIVSGLLQQPLAAGRAVKTLCSFPDSVQHAVSLFEGLEEPDAFICNTIMRTYVN 135

Query: 82  SGKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
                 AL  + E + R  +  + Y+F   +  C ++GS+  G  IH++I+K+  E  + 
Sbjct: 136 VNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLF 195

Query: 141 IANCLIDMYGKCGSVEDA---------------------------IG----VFGEMIDKD 169
           + N LI MY  CG + DA                           IG    +F EM ++D
Sbjct: 196 VRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERD 255

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           + SWNS+IA    NG++  A    +++P  D +S+N +I+G AQ  ++E A  + + MP 
Sbjct: 256 LFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPY 315

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            N  SWN +L  YV      E L +F +M  + +P +E T  ++L+  A L  L  G  I
Sbjct: 316 RNVVSWNIMLALYVRIKDYDECLRMFDKMMGETMP-NEATLVSVLTACAHLGRLDRGKWI 374

Query: 290 HSCVI-KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           HS +   + ++  +++++ALL MY+KCG +++A  +F  +  +++V+WN+MI GY  +G 
Sbjct: 375 HSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQ 434

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
             K +E+F  ++  R   P+  TF+ VL+AC+H+ +  +    YF+ M + Y I+P VEH
Sbjct: 435 ADKALEMFLDMEK-RGPMPNDATFICVLSACAHSGMILEGWW-YFDLMRRAYKIEPKVEH 492

Query: 409 CCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE 468
              M+ L+G+ G +   + +IR++       +W ALLSA    S+ ++A I A  +I+LE
Sbjct: 493 YGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELE 552

Query: 469 GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAHS 521
                 Y++L N+Y + G WD   ++R  M+ERGL K  G SW+ +E     S
Sbjct: 553 PRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGFSWVHIEEFGTQS 605



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 104/469 (22%), Positives = 200/469 (42%), Gaps = 59/469 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y    L++   ++G     +++H  ILK GF  ++FV  +L+  Y     + DA  M
Sbjct: 157 PNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAM 216

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F       +V+WNS+I GYV++G+   A  LF E+       D +S+ S +A     G +
Sbjct: 217 FEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPER----DLFSWNSMIAGYVGNGDM 272

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN------ 174
                + +K+      R +V  NC+ID Y +  ++E A  +F  M  ++++SWN      
Sbjct: 273 TAAEDLFNKMPF----RDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALY 328

Query: 175 ----------------------------SVIAASARNGNLELAFGFLH------RLPNPD 200
                                       SV+ A A  G L+    ++H      R+  PD
Sbjct: 329 VRIKDYDECLRMFDKMMGETMPNEATLVSVLTACAHLGRLDRG-KWIHSYIKNNRVIEPD 387

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +    ++   A+ G ++ A  +   M + +  SWNS++ GY    +  +AL +F +M+ 
Sbjct: 388 VLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEK 447

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVE 319
           +    ++ TF  +LS  A    +  G      + +   ++  +     ++D+  + G ++
Sbjct: 448 RGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMK 507

Query: 320 IADSMFRSLCRK-NLVTWNAMITG--YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
             + + R +  +     W A+++      N +L +++      K + +L+P  +    +L
Sbjct: 508 DLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVA-----KRLIELEPRDIGPYLLL 562

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425
           +     +  +D V E    M K+ G+  T       I   G +  V +A
Sbjct: 563 SNIYAAEGKWDDV-EIVRKMMKERGLTKTTGFSWVHIEEFGTQSFVEKA 610


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 168/566 (29%), Positives = 287/566 (50%), Gaps = 43/566 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      LL    D        Q+H +I++ GF +++ V  +L+  Y K   L  A ++
Sbjct: 141 PDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQL 200

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P    VS+N +I+GY + G   +AL LF+++   +     ++F + L        +
Sbjct: 201 FSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDV 260

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH   +K S    + +AN L+D Y K   ++ A  +F EM + D +S+N +I   
Sbjct: 261 IFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGY 320

Query: 181 ARNGNLELAFGFLHRL----------PNPDTISY-------------------------- 204
           A NG  E +F    RL          P    +S                           
Sbjct: 321 AWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEV 380

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +++  A+    EDA  I +++   NS  W +I++ YV +    EAL +F EM  +
Sbjct: 381 QVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRE 440

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           +V  D+ TF++ L   A L++++ G  +HS VI+ GL +S+   S L+DMY+ CG ++ A
Sbjct: 441 NVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDA 500

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F+ +  +N+V WNA+I+ Y++NGD       F  +     L PDSV+FL+VL ACSH
Sbjct: 501 IEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADM-IESGLYPDSVSFLSVLTACSH 559

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  +K   YF SMT+ Y + P  +H  +MI ++ + G    A+ +I E+ F    V+W
Sbjct: 560 RGL-VEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMW 618

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSD-YVYVMLCNLYTSHGNWDVASVMRNFMRE 500
            ++L++     + D+A+ +A ++ K++   D   YV + N+Y   G W+ A+ ++  MRE
Sbjct: 619 SSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRE 678

Query: 501 RGLRKEAGCSWIEVEN-VAAHSSNIR 525
           RG++K    SW+E+++ V   ++N R
Sbjct: 679 RGVKKVTAYSWVEIDHRVHVFTANDR 704



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 158/333 (47%), Gaps = 33/333 (9%)

Query: 29  ILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKA 88
           I+K+GF   +      +    + N +A A ++F E+P  +  S N ++SGYV+S    +A
Sbjct: 37  IVKTGFDPEISRFNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRA 96

Query: 89  LNLFVEL-ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLID 147
             LF  +  R+E+     S+T  +    Q    +    +++++ +  ++   +    L+ 
Sbjct: 97  RELFESMFSRNEV-----SWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLS 151

Query: 148 MYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEV 207
            +    ++++ + +   +I                       FGF   L     I +N +
Sbjct: 152 GFDDTTTLKEVLQIHSHII----------------------RFGFSASL-----IVFNSL 184

Query: 208 INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
           ++   +   ++ A  + S MP+ +S S+N ++TGY       EAL LF +M++ D     
Sbjct: 185 VDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSG 244

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
           +TF+ ML    G   + +G  IH   IK      I VA+ALLD YSK   +++A ++F  
Sbjct: 245 FTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDE 304

Query: 328 LCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           +   + V++N +ITGYA NG   K  +LF++L+
Sbjct: 305 MPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQ 337



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 111/211 (52%), Gaps = 1/211 (0%)

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILS 225
            D +I  +N  +    R   +  A      +P  +T S N +++G  +  ++  A  +  
Sbjct: 42  FDPEISRFNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFE 101

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           SM S N  SW  ++ GY   N+  EA +L+ EM    V  D  TF+T+LSG    + L  
Sbjct: 102 SMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKE 161

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
            + IHS +I+ G  AS++V ++L+D Y K   ++IA  +F  +  K+ V++N MITGY +
Sbjct: 162 VLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTK 221

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            G   + ++LF Q++ + D QP   TF  +L
Sbjct: 222 YGFREEALKLFMQMRNM-DFQPSGFTFAAML 251


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 169/559 (30%), Positives = 282/559 (50%), Gaps = 48/559 (8%)

Query: 2   NEYVLFHLLRASSDLGWDTYC--QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           +E+    +L A + L  D++C  +Q+ C  +K+   +++FV+ A +  + K  ++ DA  
Sbjct: 300 DEFTYVSVLGACAHL--DSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKT 357

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  I     VSWN+L+ G   + +  +A+++   +    +  D  SF + + AC  + +
Sbjct: 358 LFNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRA 417

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            + G  IH   +K+S+     + + LID Y K G VE    V  ++    I+  N +IA 
Sbjct: 418 TETGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAG 477

Query: 180 SARNGNLELAFGFLHRLP----NPDTISYNEVING------------------------- 210
             +N   + A     ++      P + +++ +++G                         
Sbjct: 478 LVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTGLLSSIIGKQVHCYTLKSGFLND 537

Query: 211 -----IAQFGDI------EDAIMILSSMPS-PNSSSWNSILTGYVNRNRVPEALHLFGEM 258
                ++  G        EDA  +L  MP   N   W +I++GY       ++L  F  M
Sbjct: 538 DTSVGVSLVGTYLKARMPEDANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSFWRM 597

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           +S DV  DE TF+++L   + ++AL+ G  IH  +IK G  +     SA++DMYSKCG +
Sbjct: 598 RSYDVHPDEVTFASILKACSEMTALSDGKEIHGLIIKSGFGSYKTATSAIIDMYSKCGDI 657

Query: 319 EIADSMFRSLCRKNLVT-WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
             +   F+ L  K  +T WN+MI G+A+NG   + + LF++++  + ++ D VTFL VL 
Sbjct: 658 ISSFEAFKELKSKQDITLWNSMILGFAKNGYADEALLLFQKMQDSQ-IKSDEVTFLGVLI 716

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           AC+H  +   +   YF+SM+K YGI P V+H    I L+G+ G +  AQ +I EL F   
Sbjct: 717 ACAHAGL-ISEGRHYFDSMSKVYGIMPRVDHYACFIDLLGRGGHLQEAQEVINELPFRPD 775

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497
           GV+W   L+A     D +   I+A E+++LE  +   YV+L N+Y + GNW  A + R  
Sbjct: 776 GVIWATYLAACRMHKDEERGEIAAKELVELEPQNSSTYVLLSNMYAAAGNWVEAKMAREA 835

Query: 498 MRERGLRKEAGCSWIEVEN 516
           MRE+G  K  GCSWI V N
Sbjct: 836 MREKGATKFPGCSWITVGN 854



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/421 (27%), Positives = 205/421 (48%), Gaps = 42/421 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P       +L A+++       +Q+H   ++ G  +NVFV ++L+  Y K   + DA  +
Sbjct: 198 PTRSTFASMLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILV 257

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    + +VV WN++++G V++    +A+ +F+ ++R  + AD +++ S L AC  L S 
Sbjct: 258 FDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSH 317

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  +    +K  ++  + +AN  +DM+ K G+++DA  +F  +  KD +SWN+++   
Sbjct: 318 CLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGL 377

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGI------------------------- 211
             N   E A   L  +      PD +S+  VIN                           
Sbjct: 378 THNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNH 437

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     ++ GD+E    +L+ + + +    N ++ G V  NR  EA+ LF ++   
Sbjct: 438 AVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRD 497

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEI 320
            +    +TFS++LSG  GL +   G  +H   +K G L+    V  +L+  Y K    E 
Sbjct: 498 GLKPSSFTFSSILSGCTGLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPED 557

Query: 321 ADSMFRSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           A+ +   +   KNLV W A+++GYA+NG   + +  F ++++  D+ PD VTF ++L AC
Sbjct: 558 ANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMRSY-DVHPDEVTFASILKAC 616

Query: 380 S 380
           S
Sbjct: 617 S 617



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 126/461 (27%), Positives = 219/461 (47%), Gaps = 27/461 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++ L   L A S LG     +Q HC   K G  S  F + AL+  Y +   + DA ++
Sbjct: 29  PDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDARRV 88

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I  P  V W S+ISGY ++G++++A+ LF  +E+     D  +  + + A   LG L
Sbjct: 89  FGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTALGRL 148

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN------ 174
           +    +  ++   S     V  N +I  Y +   +E    VFG  + KD+  W       
Sbjct: 149 EDARTLLHRMPAPS---STVAWNAVISGYAQQSGIEHE--VFG--LYKDMRCWGLWPTRS 201

Query: 175 ---SVIAASAR-----NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
              S+++A+A       G    A    H L + +    + +IN  A+ G I DAI++   
Sbjct: 202 TFASMLSAAANATAFIEGRQVHAAAVRHGL-DANVFVGSSLINLYAKCGCIGDAILVFDC 260

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
               N   WN++L G V      EA+ +F  M+   +  DE+T+ ++L   A L +   G
Sbjct: 261 SGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLG 320

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
             +    IK  +DAS+ VA+A LDM+SK G ++ A ++F  +  K+ V+WNA++ G   N
Sbjct: 321 RQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHN 380

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
            +  + I + + +  +  + PD V+F  V+ ACS  +I   +  +    +   + I    
Sbjct: 381 EEDEEAIHMLKGM-NLDGVTPDEVSFATVINACS--NIRATETGKQIHCLAMKHSICSNH 437

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
               S+I    + G+V   ++++ ++   S  +V R +L A
Sbjct: 438 AVGSSLIDFYSKHGDVESCRKVLAQVDASS--IVPRNVLIA 476



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 165/380 (43%), Gaps = 44/380 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E     ++ A S++      +Q+HC  +K    SN  V ++L+ FY K   +    K+
Sbjct: 400 PDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKV 459

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
             ++   S+V  N LI+G VQ+ +  +A++LF ++ R  +   +++F+S L+ C  L S 
Sbjct: 460 LAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTGLLSS 519

Query: 121 QLGMAIHSKIVKYS-LERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIA 178
            +G  +H   +K   L     +   L+  Y K    EDA  +  EM D K+++ W ++++
Sbjct: 520 IIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANKLLIEMPDHKNLVEWTAIVS 579

Query: 179 ASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIED-----AIMILSSMPS 229
             A+NG    +     R+     +PD +++  ++   ++   + D      ++I S   S
Sbjct: 580 GYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTALSDGKEIHGLIIKSGFGS 639

Query: 230 PNSSS-------------------------------WNSILTGYVNRNRVPEALHLFGEM 258
             +++                               WNS++ G+       EAL LF +M
Sbjct: 640 YKTATSAIIDMYSKCGDIISSFEAFKELKSKQDITLWNSMILGFAKNGYADEALLLFQKM 699

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-QGLDASIVVASALLDMYSKCGQ 317
           Q   +  DE TF  +L   A    ++ G      + K  G+   +   +  +D+  + G 
Sbjct: 700 QDSQIKSDEVTFLGVLIACAHAGLISEGRHYFDSMSKVYGIMPRVDHYACFIDLLGRGGH 759

Query: 318 VEIADSMFRSL-CRKNLVTW 336
           ++ A  +   L  R + V W
Sbjct: 760 LQEAQEVINELPFRPDGVIW 779


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 167/534 (31%), Positives = 263/534 (49%), Gaps = 44/534 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINS--LADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q H  +L++  L N   S+ L+ F    +S  L  A K+F ++  P     N++I GY 
Sbjct: 28  KQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYA 87

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           +S    +A++L+  +    +  D Y++   LAAC +LG+++LG   H +++K      + 
Sbjct: 88  RSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLF 147

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-- 198
           + N LI  Y  CGS   A  VF E   +D+++WN +I A    G  E AF  L  +    
Sbjct: 148 VINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLD 207

Query: 199 ---PDTISYNEVINGIAQFG-----------------------------------DIEDA 220
              PD ++   ++   AQ G                                   DIE A
Sbjct: 208 NLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESA 267

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             + + +   +  SW S+L+G        EAL LF +MQ   + +DE T   +LS  A  
Sbjct: 268 QEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQT 327

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
            AL  G  IH  + K  ++  +V+ +AL+DMY+KCG +++A  +FR +  +N+ TWNA+I
Sbjct: 328 GALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALI 387

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
            G A +G     I LF+Q++  + L PD VTF+ +L ACSH  +  D+    F++M   +
Sbjct: 388 GGLAMHGHGEDAISLFDQMEHDK-LMPDDVTFIALLCACSHAGL-VDEGLAMFQAMKNKF 445

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
            I+P +EH   ++ L+ +  +V  A   I  +   +  V+W  LL A  +    D+A   
Sbjct: 446 QIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKI 505

Query: 461 AAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
              VI+LE DS   YVML NLY     WD A  +R  M+ +G+ K  GCSWIE+
Sbjct: 506 GRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIEL 559



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 114/463 (24%), Positives = 206/463 (44%), Gaps = 58/463 (12%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + Y    +L A + LG     ++ HC +LK+GF S++FV  AL+ FY    S   A  +F
Sbjct: 110 DNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVF 169

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER-SEIYADAYSFTSALAACGQLGSL 120
            E     VV+WN +I+ ++  G   KA +L  E+ +   +  D  +  S + AC QLG+L
Sbjct: 170 DESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNL 229

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +HS   +  L+  + + N ++DMY KC  +E A  VF  + +KD++SW S+++  
Sbjct: 230 ERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGL 289

Query: 181 ARNGNLELAFGFLHRLP---------------------------------------NPDT 201
           A++G  + A     ++                                        N D 
Sbjct: 290 AKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDL 349

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           +    +++  A+ G I+ A+ +   M   N  +WN+++ G        +A+ LF +M+  
Sbjct: 350 VLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHD 409

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            +  D+ TF  +L   +    +  G+ +  +   K  ++  +     ++D+  +  +V+ 
Sbjct: 410 KLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDD 469

Query: 321 ADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQL-KTVRDLQPDS----VTFLN 374
           A +   ++  + N V W A + G  R+G      +L E++ + V +L+PDS    V   N
Sbjct: 470 ALAFIENMPIKANSVLW-ATLLGACRSGGH---FDLAEKIGRRVIELEPDSCGRYVMLSN 525

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417
           + A  S  D              K+ GI+ T    CS I L G
Sbjct: 526 LYAGVSQWDHALK-----LRKQMKNKGIEKTPG--CSWIELNG 561



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 140/270 (51%), Gaps = 9/270 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +  L+ A + LG     + LH Y  + G   N+ V+ A++  Y K + +  A ++
Sbjct: 211 PDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEV 270

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I +  V+SW S++SG  +SG +++AL LF +++ ++I  D  +    L+AC Q G+L
Sbjct: 271 FNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGAL 330

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH  I K+ +   +V+   L+DMY KCGS++ A+ VF  M  +++ +WN++I   
Sbjct: 331 DQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGL 390

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
           A +G+ E A     ++ +    PD +++  ++   +  G +++ + +  +M +     P 
Sbjct: 391 AMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPR 450

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              +  ++       +V +AL     M  K
Sbjct: 451 MEHYGCVVDLLCRARKVDDALAFIENMPIK 480


>gi|317106770|dbj|BAJ53262.1| JMS10C05.5 [Jatropha curcas]
          Length = 638

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 167/561 (29%), Positives = 286/561 (50%), Gaps = 45/561 (8%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE+    +L+A S   +  + QQ HC+++K GF  NV V T+L+  Y +     DA K+F
Sbjct: 40  NEHTCSVILQACSSPDYRIFGQQFHCFVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVF 99

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC-GQLGSL 120
             +    V  +N +I  Y ++G   KA+ +F+ +  + +  + Y+FT+ ++AC G LG +
Sbjct: 100 DSMACKDVRCFNFMILEYARAGNGEKAIRVFINMLNAGLQPNDYTFTNIISACDGDLG-I 158

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G        KY       I N +I+MYGK G   +A  +F  M D+++ISW ++I+  
Sbjct: 159 EEGEQFLGLSFKYGFLNETSIGNAIINMYGKKGMAREAERMFSAMTDRNLISWTALISGY 218

Query: 181 ARNG-----------------------------------NLELAF---GFLHRLPNPDTI 202
            R+G                                   NLEL     G + +L     +
Sbjct: 219 TRSGDGKKAVDTFMELHLCGVNFDSSLLTTILDGCSECRNLELGLQIHGLVIKLGYACAV 278

Query: 203 SY-NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE--ALHLFGEMQ 259
           +    +++  A+ G++  A M+   + S   +S+N+IL G++  +R  E   + LF   +
Sbjct: 279 NIGTALVDLYAKCGNLMSARMVFDGLSSKRIASFNAILAGFMENSRDGEEDPIVLFNHFR 338

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
              +  D  TFS +LS  A  S L  G   H+  IK G +A + VA+A++ MY+KCG +E
Sbjct: 339 LDGIKPDMVTFSRLLSLSANHSTLGRGRCYHAYAIKTGFEADLSVANAVITMYAKCGSIE 398

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  MF  +   + ++WNAMI+ YA +G   KV+ LFE++   ++  PD +T L++L AC
Sbjct: 399 EAHRMFNVMNDHDSISWNAMISAYALHGQGAKVLLLFEEM-IKKEFAPDEITILSILQAC 457

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +++ +  D +S  F  M   YGIKP +EH   M+ L+G+ G +  A  +I +  F    +
Sbjct: 458 TYSGLFRDGIS-LFNVMEPKYGIKPLLEHYACMVDLLGRAGHLSEAMDIINKSPFSKSTL 516

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +WR L++    C D +  ++++  +++L       Y+++ N+Y      D A+ +R  M 
Sbjct: 517 LWRTLVNVCKLCGDRNFGKLASKYLLELSPVEAGSYILVSNMYAGERMLDEAAKVRTVMN 576

Query: 500 ERGLRKEAGCSWIEVENVAAH 520
           +  L KEAG SWIE+++   H
Sbjct: 577 DLKLSKEAGTSWIEIDDKVHH 597



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 200/453 (44%), Gaps = 49/453 (10%)

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
           + ++W SLI GY+   ++  ALN+  E+ +S    + ++ +  L AC        G   H
Sbjct: 5   NTITWTSLIKGYLDDNEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFGQQFH 64

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
             ++K   +  VV+   LI MY +     DA  VF  M  KD+  +N +I   AR GN E
Sbjct: 65  CFVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARAGNGE 124

Query: 188 LAFG-FLHRL-----PNPDTISY---------------------------------NEVI 208
            A   F++ L     PN  T +                                  N +I
Sbjct: 125 KAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNETSIGNAII 184

Query: 209 NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268
           N   + G   +A  + S+M   N  SW ++++GY       +A+  F E+    V  D  
Sbjct: 185 NMYGKKGMAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDSS 244

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
             +T+L G +    L  G+ IH  VIK G   ++ + +AL+D+Y+KCG +  A  +F  L
Sbjct: 245 LLTTILDGCSECRNLELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGNLMSARMVFDGL 304

Query: 329 CRKNLVTWNAMITGY---ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA-ACSHTDI 384
             K + ++NA++ G+   +R+G+   ++ LF   + +  ++PD VTF  +L+ + +H+ +
Sbjct: 305 SSKRIASFNAILAGFMENSRDGEEDPIV-LFNHFR-LDGIKPDMVTFSRLLSLSANHSTL 362

Query: 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRAL 444
              +    +   T   G +  +    ++I +  + G +  A RM   +      + W A+
Sbjct: 363 GRGRCYHAYAIKT---GFEADLSVANAVITMYAKCGSIEEAHRMFNVMN-DHDSISWNAM 418

Query: 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477
           +SA           +   E+IK E   D + ++
Sbjct: 419 ISAYALHGQGAKVLLLFEEMIKKEFAPDEITIL 451



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 113/221 (51%), Gaps = 4/221 (1%)

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           M   N+ +W S++ GY++ N    AL++  EM      ++E+T S +L   +      +G
Sbjct: 1   MLVRNTITWTSLIKGYLDDNEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFG 60

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
              H  VIK G D ++VV ++L+ MY++      A+ +F S+  K++  +N MI  YAR 
Sbjct: 61  QQFHCFVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARA 120

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           G+  K I +F  +     LQP+  TF N+++AC   D+  ++  E F  ++  YG     
Sbjct: 121 GNGEKAIRVFINMLNA-GLQPNDYTFTNIISACD-GDLGIEE-GEQFLGLSFKYGFLNET 177

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
               ++I + G+KG    A+RM   +   +  + W AL+S 
Sbjct: 178 SIGNAIINMYGKKGMAREAERMFSAMTDRNL-ISWTALISG 217


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 159/553 (28%), Positives = 279/553 (50%), Gaps = 39/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +    +L A +  G     Q++H   +K G  S+VFV  +LM  Y K   + DA  +
Sbjct: 199 PNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSV 258

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    +VSWN+L++G   +    +AL LF E   +       ++ + +  C  L  L
Sbjct: 259 FNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQL 318

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI-DKDIISWNSVIAA 179
            L   +HS ++K+       +   L D Y KCG + DA+ +F      ++++SW ++I+ 
Sbjct: 319 ALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISG 378

Query: 180 SARNGNLELAFGFLHRLPN----PDTISYNEVING------------------------- 210
             +NG++ LA     R+      P+  +Y+ ++                           
Sbjct: 379 CIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVG 438

Query: 211 ------IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
                  ++FG  EDA+ I   +   +  +W+++L+ +        A +LF +M  + + 
Sbjct: 439 TALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIK 498

Query: 265 MDEYTFSTMLSGIAGLSA-LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
            +E+T S+++   A  SA +  G   H+  IK     +I V+SAL+ MYS+ G ++ A  
Sbjct: 499 PNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQI 558

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F     ++LV+WN+MI+GYA++G   K IE F Q++    +Q D VTFL V+  C+H  
Sbjct: 559 VFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEA-SGIQMDGVTFLAVIMGCTHNG 617

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
           +  +   +YF+SM +D+ I PT+EH   M+ L  + G++     +IR++ F +  +VWR 
Sbjct: 618 LVVEG-QQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRT 676

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           LL A     ++++ + SA +++ LE      YV+L N+Y + G W     +R  M  R +
Sbjct: 677 LLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKV 736

Query: 504 RKEAGCSWIEVEN 516
           +KEAGCSWI+++N
Sbjct: 737 KKEAGCSWIQIKN 749



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/503 (26%), Positives = 239/503 (47%), Gaps = 52/503 (10%)

Query: 23  QQLHCYILKSGF-LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           +QLHC  +K G     V   T+L+  Y K  S+ +  ++F  +P+ +VV+W SL++G   
Sbjct: 119 EQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAH 178

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           +  + + + LF  +    I+ + ++F S L+A    G+L LG  +H++ VK+     V +
Sbjct: 179 AQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFV 238

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR----LP 197
            N L++MY KCG VEDA  VF  M  +D++SWN+++A    N     A    H     + 
Sbjct: 239 CNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMG 298

Query: 198 NPDTISYNEVI-----------------------------------NGIAQFGDIEDAIM 222
                +Y  VI                                   +  ++ G++ DA+ 
Sbjct: 299 KMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALN 358

Query: 223 ILS-SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           I S +  S N  SW +I++G +    +P A+ LF  M+   V  +E+T+S ML   A LS
Sbjct: 359 IFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLK--ASLS 416

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L     IH+ VIK        V +ALL  YSK G  E A S+F+ + +K++V W+AM++
Sbjct: 417 ILP--PQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLS 474

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            +A+ GD      LF ++  ++ ++P+  T  +V+ AC+      D+    F +++  Y 
Sbjct: 475 CHAQAGDCEGATYLFNKM-AIQGIKPNEFTISSVIDACACPSAGVDQ-GRQFHAISIKYR 532

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG----ACSDLDVA 457
               +    +++ +  +KG +  AQ ++ E       V W +++S       +   ++  
Sbjct: 533 YHDAICVSSALVSMYSRKGNIDSAQ-IVFERQTDRDLVSWNSMISGYAQHGYSMKAIETF 591

Query: 458 RISAAEVIKLEGDSDYVYVMLCN 480
           R   A  I+++G +    +M C 
Sbjct: 592 RQMEASGIQMDGVTFLAVIMGCT 614



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 168/358 (46%), Gaps = 43/358 (12%)

Query: 63  EIPQ-PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
           EIP+  + V  N ++  Y + G   + L+ F    R  +  D+ + +  L AC  +    
Sbjct: 57  EIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRV 116

Query: 122 LGMAIHSKIVKYSLERGVVIA-NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           LG  +H   VK   +RG V A   L+DMY KCGSV + I VF  M  K++++W S++   
Sbjct: 117 LGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGC 176

Query: 181 ARNGNLELAFGFLHRL------PNPDTISY------------------------------ 204
           A             R+      PNP T +                               
Sbjct: 177 AHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSV 236

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N ++N  A+ G +EDA  + + M + +  SWN+++ G        EAL LF E ++ 
Sbjct: 237 FVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRAT 296

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
              M + T++T++   A L  L     +HSCV+K G   +  V +AL D YSKCG++  A
Sbjct: 297 MGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADA 356

Query: 322 DSMFR-SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            ++F  +   +N+V+W A+I+G  +NGD+   + LF +++  R + P+  T+  +L A
Sbjct: 357 LNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDR-VMPNEFTYSAMLKA 413


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 159/522 (30%), Positives = 280/522 (53%), Gaps = 40/522 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    + +A   LG  +  ++L   + K+G   + +V  +L+  Y ++ +L D  KM
Sbjct: 135 PDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQL-ALTDVMKM 193

Query: 61  -FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYADAYSFTSALAACGQLG 118
            F E+P   V+SWN +ISGYV+  ++  A+N+F  + E S +  D  +  S L+AC  L 
Sbjct: 194 LFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALK 253

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            L+LG  IH   V+ +++   +I N L+DMY KCG +  A  VF EM             
Sbjct: 254 RLELGKKIHH-YVRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEM------------- 299

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
                             P+ + I +  +++G A  G++E+A  +    P  +   W ++
Sbjct: 300 ------------------PSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAM 341

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           + GYV  NR  EA+ LF EMQ + V  D++   ++L+G A   A+  G  IH  + +  +
Sbjct: 342 INGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRI 401

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
               VV +AL++MY+KCG +E A  +F  L  K+  +W ++I G A NG  +K +ELF +
Sbjct: 402 PIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSK 461

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           +K    ++PD +TF+ VL+ACSH  +  ++  ++F SM  +Y IKP VEH   ++ L+G+
Sbjct: 462 MKQA-GVRPDDITFIGVLSACSHGGL-VEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGR 519

Query: 419 KGEVWRAQRMIRELGFGSYGV---VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475
            G +  A+ +I+++   +  +   ++ +LLSA     ++++    A +++K E     V+
Sbjct: 520 AGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFESSDSSVH 579

Query: 476 VMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
            +L N+Y     W+  + +R  M++ G++K  GCS IEV+++
Sbjct: 580 TLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSI 621



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/348 (20%), Positives = 148/348 (42%), Gaps = 45/348 (12%)

Query: 161 VFGEMIDKDIISWNSVIA--ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIE 218
           +F   + +DI+S N ++A      NGNL  A      +  P  + YN +I   A+ G+ +
Sbjct: 60  IFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYK 119

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
             ++                               LF +++   +  D +T+  +   I 
Sbjct: 120 RTLV-------------------------------LFSKLREDGLWPDNFTYPFVFKAIG 148

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            L  ++    +   V K GL+    V ++L+DMY++    ++   +F  +  +++++WN 
Sbjct: 149 YLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNV 208

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           MI+GY +       I +F +++    L PD  T ++ L+AC  T +   ++ +      +
Sbjct: 209 MISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSAC--TALKRLELGKKIHHYVR 266

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           D  +K T     +++ +  + G +  A+ +  E+   +  + W  ++S    C +L+ AR
Sbjct: 267 D-NVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNV-ICWTTMVSGYANCGELEEAR 324

Query: 459 ISAAEVIKLEGDSDYV-YVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505
               E+ +     D V +  + N Y     +D A  +    RE  +RK
Sbjct: 325 ----ELFEGSPIRDVVIWTAMINGYVQFNRFDEAVAL---FREMQIRK 365


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 160/499 (32%), Positives = 256/499 (51%), Gaps = 38/499 (7%)

Query: 23  QQLHCYILKSGFL--SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H   +  G L      ++  L+  Y ++ S  DA K+F  I  P +VSW  LIS Y+
Sbjct: 271 KQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYL 330

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
            + +  KA ++F  L  S +  D++    A++ACG    L  G  +H  + ++ L    +
Sbjct: 331 HTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPI 390

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           + N LIDMY                               +R+G +E+A      +   D
Sbjct: 391 VGNALIDMY-------------------------------SRSGAIEVACSVFKTMEIKD 419

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
             S+  ++NG  +  DIE A  I   MP  NS SW +++TGYV        L LF EM++
Sbjct: 420 VSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRA 479

Query: 261 --KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
             KD P    T   +LSG A + A   G  +H  V K  LD  + V +AL+DMY+K G +
Sbjct: 480 EGKDWPT-VITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGAL 538

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            +A  +F+ + ++++ +W  MI+G A +G  T  +E F  + +     P+ VT L+VL+A
Sbjct: 539 VLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDM-SKSGXXPNEVTLLSVLSA 597

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH  +  +  S  F+ M + +GIKP ++H   M+ L+G+ G +  A+ +I  +      
Sbjct: 598 CSHAGLVVEGRS-LFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDS 656

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
           V+WR+LLSA     +L +A ++   +I+LE D D VY++L N+Y S   W+ A   R  M
Sbjct: 657 VIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAM 716

Query: 499 RERGLRKEAGCSWIEVENV 517
           R+R ++K+ GCSW+EV  V
Sbjct: 717 RDRRVKKKPGCSWVEVNGV 735



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 98/191 (51%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +  +L   +D+G       +H Y+ K+    +V V+ ALM  Y K  +L  A K+
Sbjct: 485 PTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKI 544

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+  V SW ++ISG    GK   AL  F ++ +S    +  +  S L+AC   G +
Sbjct: 545 FQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLV 604

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G ++  K+V+ + ++  +    C++D+ G+ G + +A  +   M I  D + W S+++
Sbjct: 605 VEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLS 664

Query: 179 ASARNGNLELA 189
           A   +GNL LA
Sbjct: 665 ACLVHGNLALA 675



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 9/206 (4%)

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV--VASALLDMY 312
           F    +++  M+  TF  +L     L  L     IH   +  GL  S    +A  LL+ Y
Sbjct: 242 FASYTNRNAHMNTQTFYFLLQKCGSLEKLKQ---IHGKAVTLGLLCSKRQHLACKLLNTY 298

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
           ++ G    A  +F  +   ++V+W  +I+ Y       K   +F  L     L+PDS   
Sbjct: 299 TQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFH-SGLRPDSFCV 357

Query: 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
           +  ++AC H     +    +      + G  P V +  ++I +  + G +  A  + + +
Sbjct: 358 VGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGN--ALIDMYSRSGAIEVACSVFKTM 415

Query: 433 GFGSYGVVWRALLSASGACSDLDVAR 458
                   W +LL+    C+D++ AR
Sbjct: 416 EIKDVS-SWTSLLNGFIKCNDIEAAR 440


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 144/482 (29%), Positives = 259/482 (53%), Gaps = 8/482 (1%)

Query: 34  FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFV 93
           FL N F+S         ++ +  A   F  +  P+V+ +N+LI G V      +AL  ++
Sbjct: 11  FLVNQFISAC-----SNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYM 65

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
            + R+ +   +YSF+S + AC  L     G A+H  + K+  +  V +   LI+ Y   G
Sbjct: 66  HMLRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFG 125

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQ 213
            V  +  VF +M ++D+ +W ++I+A  R+G++  A      +P  +  ++N +I+G  +
Sbjct: 126 DVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGK 185

Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
            G+ E A  + + MP+ +  SW +++  Y    R  E + LF ++  K +  DE T +T+
Sbjct: 186 LGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTV 245

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           +S  A L AL  G  +H  ++ QG D  + + S+L+DMY+KCG +++A  +F  L  KNL
Sbjct: 246 ISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNL 305

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393
             WN +I G A +G + + + +F +++  R ++P++VTF+++L AC+H     ++   +F
Sbjct: 306 FCWNCIIDGLATHGYVEEALRMFGEMERKR-IRPNAVTFISILTACTHAGF-IEEGRRWF 363

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD 453
            SM +DY I P VEH   M+ L+ + G +  A  MIR +       +W ALL+      +
Sbjct: 364 MSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLHKN 423

Query: 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEA-GCSWI 512
           L++A I+   ++ LE  +   Y +L N+Y     W+  + +R  M++ G+ K   G SW+
Sbjct: 424 LEIAHIAVQNLMVLEPSNSGHYSLLVNMYAEENRWNEVAKIRTTMKDLGVEKRCPGSSWV 483

Query: 513 EV 514
           E+
Sbjct: 484 EI 485



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 170/406 (41%), Gaps = 90/406 (22%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFY---------RKI 51
           P  Y    L++A + L    + + +H ++ K GF S+VFV T L+ FY         R++
Sbjct: 74  PTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRV 133

Query: 52  ----------------------NSLADAHKMFVEIPQPSVVSWNSLISGYVQSG------ 83
                                   +A A ++F E+P+ +V +WN++I GY + G      
Sbjct: 134 FDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAE 193

Query: 84  -------------------------KYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
                                    +Y++ + LF ++    +  D  + T+ ++AC  LG
Sbjct: 194 FLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLG 253

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           +L LG  +H  +V    +  V I + LIDMY KCGS++ A+ VF ++  K++  WN +I 
Sbjct: 254 ALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIID 313

Query: 179 ASARNGNLELA---FGFLHRLP-NPDTISYNEVINGIAQFGDIEDAIMILSSMP-----S 229
             A +G +E A   FG + R    P+ +++  ++      G IE+      SM      +
Sbjct: 314 GLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIA 373

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
           P    +  ++        + +AL +   M  +                   ++  WG L+
Sbjct: 374 PQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEP------------------NSFIWGALL 415

Query: 290 HSCVIKQGLD-ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
           + C + + L+ A I V + ++   S  G   +  +M+    R N V
Sbjct: 416 NGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSLLVNMYAEENRWNEV 461



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 78/160 (48%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           D    N+ I+  +    I  A    +++ +PN   +N+++ G V+     +AL  +  M 
Sbjct: 9   DCFLVNQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHML 68

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
             +V    Y+FS+++     L    +G  +H  V K G D+ + V + L++ YS  G V 
Sbjct: 69  RNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVG 128

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            +  +F  +  +++  W  MI+ + R+GD+     LF+++
Sbjct: 129 GSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEM 168


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 167/540 (30%), Positives = 277/540 (51%), Gaps = 44/540 (8%)

Query: 25  LHCYILKSGFL-SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           LH + LK G L SNV V   L+  Y K   LA A ++F E+P    V++N+++ G  + G
Sbjct: 161 LHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEG 220

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
            + +AL+LF  + R  + A  ++F++ L     +G L LG  +H  +V  +    V + N
Sbjct: 221 SHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHG-LVARATSSNVFVNN 279

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR-------- 195
            L+D Y KC  +++   +F EMI++D +S+N +IA  A N    +               
Sbjct: 280 SLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDR 339

Query: 196 --LPNPDTISY-----------------------------NEVINGIAQFGDIEDAIMIL 224
             LP    +S                              N +I+  ++ G ++ A    
Sbjct: 340 QALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNF 399

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
            +       SW +++TG V   +  EAL LF  M+   +  D  TFS+ +   + L+ + 
Sbjct: 400 INKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIG 459

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  +HS +I+ G  +S+   SALLDMY+KCG ++ A   F  +  +N ++WNA+I+ YA
Sbjct: 460 LGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYA 519

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
             G     I++FE +      +PDSVTFL+VL+ACSH  +  ++  +YFE M  +YGI P
Sbjct: 520 HYGQAKNAIKMFEGM-LCYGFKPDSVTFLSVLSACSHNGLA-EECMKYFELMEYEYGISP 577

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
             EH   +I  +G+ G   + Q M+ E+ F    ++W ++L +     + D+AR++A ++
Sbjct: 578 WKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKL 637

Query: 465 IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN-VAAHSSN 523
             +       YV+L N++   G W+ A+ ++  MR+RGLRKE G SW+EV++ V + SSN
Sbjct: 638 FSMGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSN 697



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 139/305 (45%), Gaps = 37/305 (12%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  ++  G  S   V  AL+  Y K   L  A   F+     + VSW ++I+G VQ+
Sbjct: 361 KQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQN 420

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+  +AL LF  + R+ +  D  +F+S + A   L  + LG  +HS +++      V   
Sbjct: 421 GQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSG 480

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE---------LAFGFL 193
           + L+DMY KCG +++A+  F EM +++ ISWN+VI+A A  G  +         L +GF 
Sbjct: 481 SALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGF- 539

Query: 194 HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRV 248
                PD++++  V++  +  G  E+ +     M      SP    ++ ++       R 
Sbjct: 540 ----KPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRF 595

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
            +   + GEM  +D P                  + W  ++HSC      D + V A  L
Sbjct: 596 DKVQEMLGEMPFEDDP------------------IIWSSILHSCRTHGNQDLARVAAEKL 637

Query: 309 LDMYS 313
             M S
Sbjct: 638 FSMGS 642



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 11/228 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+       ++ASS+L      +QLH Y+++SG +S+VF  +AL+  Y K   L +A + 
Sbjct: 440 PDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQT 499

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+ + +SWN++IS Y   G+ + A+ +F  +       D+ +F S L+AC   G  
Sbjct: 500 FDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLA 559

Query: 121 QLGMAIHSKIVKYSLERGVVI----ANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNS 175
           +  M  + ++++Y  E G+       +C+ID  G+ G  +    + GEM  + D I W+S
Sbjct: 560 EECMK-YFELMEY--EYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSS 616

Query: 176 VIAASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDA 220
           ++ +   +GN +LA     +L    + D   Y  + N  A+ G  EDA
Sbjct: 617 ILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVILSNIFAKAGKWEDA 664



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 151/339 (44%), Gaps = 32/339 (9%)

Query: 67  PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI 126
           P+    N L+   + SG+  +A  LF ++       +A+S    L+   + G  QL  A 
Sbjct: 32  PATYRLNLLLHSLISSGRLAQARALFDQMPHRN---NAFSLNRMLSGYSRSG--QLSAAH 86

Query: 127 HSKIVKYSLERGVVIANCLIDMYGKC--GSVEDAIGVFGEMIDK----DIISWNSVIAAS 180
           H  +      R  V    +I  +         DA+ +F +M+ +    D ++  +V+   
Sbjct: 87  HLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLP 146

Query: 181 ARNGN------------LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP 228
             +G               L  G LH     + +  N +++   + G +  A  +   MP
Sbjct: 147 PASGGTAAAIIIASLHPFALKLGLLHS----NVVVCNTLLDAYCKHGLLAAARRVFQEMP 202

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             +S ++N+++ G        EAL LF  M+ K +    +TFST+L+   G+  L  G  
Sbjct: 203 HRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQ 262

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           +H  ++ +   +++ V ++LLD YSKC  ++    +F  +  ++ V++N MI GYA N  
Sbjct: 263 VHG-LVARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRC 321

Query: 349 LTKVIELFEQLKTV---RDLQPDSVTFLNVLAACSHTDI 384
            + V+ LF +++++   R   P   + L+V  +  H  I
Sbjct: 322 ASIVLRLFREMQSLSFDRQALP-YASLLSVAGSVPHIGI 359


>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 599

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 155/492 (31%), Positives = 254/492 (51%), Gaps = 36/492 (7%)

Query: 27  CYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYR 86
           C +     L N++    ++  + K   L  A  +F  +P+  VVSWN+++ GY Q G   
Sbjct: 102 CKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLH 161

Query: 87  KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
           +AL  F EL RS I  + +SF   L AC +   LQL    H +++       VV++  +I
Sbjct: 162 EALWFFKELRRSGIKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSII 221

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNE 206
           D Y KCG +E A   F EM  KDI  W ++I+                            
Sbjct: 222 DAYAKCGQMESAKRCFDEMTVKDIHIWTTLIS---------------------------- 253

Query: 207 VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
              G A+ GD+E A  +   MP  N  SW +++ GYV +     AL LF +M +  V  +
Sbjct: 254 ---GYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPE 310

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
           ++TFS+ L   A +++L  G  IH  +I+  +  + +V S+L+DMYSK G +E ++ +FR
Sbjct: 311 QFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERVFR 370

Query: 327 SLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
            +C  +++ V WN MI+  A++G   K +++ + +   R + P+  T + +L ACSH+ +
Sbjct: 371 -ICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFR-VHPNRTTLVVILNACSHSGL 428

Query: 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRAL 444
             + V  +FESMT  +GI P  EH   +I L+G+ G        I E+ F     +W A+
Sbjct: 429 VEEGV-RWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEMPFEPDKHIWNAI 487

Query: 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504
           L       + ++ + +A E+IKL+ +S   Y++L ++Y  HG W++   +R  M++R + 
Sbjct: 488 LGVCRIHGNEELGKKAAEELIKLDPESSAPYILLSSIYADHGKWELVEKLRGIMKKRRVN 547

Query: 505 KEAGCSWIEVEN 516
           KE   SWIE+EN
Sbjct: 548 KEKAVSWIEIEN 559



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 174/406 (42%), Gaps = 66/406 (16%)

Query: 74  SLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY 133
           SL+S +    +  +A++    L +  I        S L  CG   SL+ G  IH  +   
Sbjct: 16  SLLSRHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKIT 75

Query: 134 SLER-GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF 192
             +R   +++N LI MY KCG   DA  VF +M  +++ SWN++++   ++G L  A   
Sbjct: 76  GFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARVV 135

Query: 193 LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEAL 252
              +P  D +S+N ++ G AQ G++                                EAL
Sbjct: 136 FDSMPERDVVSWNTMVIGYAQDGNLH-------------------------------EAL 164

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
             F E++   +  +E++F+ +L+       L      H  V+  G  +++V++ +++D Y
Sbjct: 165 WFFKELRRSGIKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAY 224

Query: 313 SKCGQ-------------------------------VEIADSMFRSLCRKNLVTWNAMIT 341
           +KCGQ                               +E AD +FR +  KN V+W A+I 
Sbjct: 225 AKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIA 284

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GY R G     ++LF ++  +R ++P+  TF + L  C+   I   +  +          
Sbjct: 285 GYVRQGSGDLALDLFRKMIAMR-VKPEQFTFSSCL--CASASIASLRHGKQIHGYMIRTN 341

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
           ++P      S+I +  + G +  ++R+ R        V+W  ++SA
Sbjct: 342 VRPNAIVTSSLIDMYSKSGSLEASERVFRICYDKQDCVLWNTMISA 387



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 116/262 (44%), Gaps = 36/262 (13%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE+    LL A          QQ H  +L +GFLSNV +S +++  Y K   +  A + F
Sbjct: 178 NEFSFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCF 237

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS----------------------- 98
            E+    +  W +LISGY + G    A  LF E+                          
Sbjct: 238 DEMTVKDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALD 297

Query: 99  --------EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
                    +  + ++F+S L A   + SL+ G  IH  +++ ++    ++ + LIDMY 
Sbjct: 298 LFRKMIAMRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYS 357

Query: 151 KCGSVEDAIGVFGEMIDK-DIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYN 205
           K GS+E +  VF    DK D + WN++I+A A++G    A   L  +     +P+  +  
Sbjct: 358 KSGSLEASERVFRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTLV 417

Query: 206 EVINGIAQFGDIEDAIMILSSM 227
            ++N  +  G +E+ +    SM
Sbjct: 418 VILNACSHSGLVEEGVRWFESM 439



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 93/192 (48%), Gaps = 3/192 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P ++     L AS+ +    + +Q+H Y++++    N  V+++L+  Y K  SL  + ++
Sbjct: 309 PEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERV 368

Query: 61  F-VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F +   +   V WN++IS   Q G   KAL +  ++ +  ++ +  +    L AC   G 
Sbjct: 369 FRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTLVVILNACSHSGL 428

Query: 120 LQLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
           ++ G+    S  V++ +        CLID+ G+ G  ++ +    EM  + D   WN+++
Sbjct: 429 VEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEMPFEPDKHIWNAIL 488

Query: 178 AASARNGNLELA 189
                +GN EL 
Sbjct: 489 GVCRIHGNEELG 500


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 159/521 (30%), Positives = 276/521 (52%), Gaps = 38/521 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    + +A   LG     ++++ +++KSG   + +V  +LM  Y ++  + +  ++
Sbjct: 130 PDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQV 189

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER-SEIYADAYSFTSALAACGQLGS 119
           F E+PQ  VVSWN LISGYV+  +Y  A+++F  +++ S +  +  +  S L+AC  L  
Sbjct: 190 FEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKM 249

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+LG  IH + V+  L   + I N L+DMY KCG +  A  +F +M  K +I W S+++ 
Sbjct: 250 LELGKEIH-RYVREQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSG 308

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
               G L+ A     R P                   + D ++            W +++
Sbjct: 309 YVNCGQLDEARELFERSP-------------------VRDVVL------------WTAMI 337

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            GYV  NR  +A+ LF EMQ K V  D +T   +L+G A L  L  G  IH  + +  + 
Sbjct: 338 NGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIM 397

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
              VV +AL++MY+KCG +E +  +F  L  K+  +W ++I G A NG  +K +ELF ++
Sbjct: 398 IDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEM 457

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
                ++PD +TF+ VL+ACSH  +  ++  ++F SMT  Y I+P +EH   +I L+G+ 
Sbjct: 458 VQT-GVKPDDITFIGVLSACSHGGL-VEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRA 515

Query: 420 GEVWRAQRMIRELGFGSYGVV---WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476
           G++  A+ +I +    +  V+   + ALLSA     ++++    A  ++ +E     V+ 
Sbjct: 516 GQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHT 575

Query: 477 MLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           +L N+Y S   W+  + +R  M++ G++K  GCS +EV  +
Sbjct: 576 LLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGI 616



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 125/266 (46%), Gaps = 20/266 (7%)

Query: 209 NGIAQFGDIEDAIMILSSMPS----------------PNSSSWNSILTGYVNRNRVPEAL 252
            G  Q GD  +  M+  + PS                P    +N ++  +       +A+
Sbjct: 58  TGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAV 117

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
            LF +++ + +  D +T+  +   I  L  +  G  ++  V+K GL+    V ++L+DMY
Sbjct: 118 LLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMY 177

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
           ++ G+V+    +F  + ++++V+WN +I+GY +       +++F +++    L+P+  T 
Sbjct: 178 AEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATV 237

Query: 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
           ++ L+AC    +  +   E    + +  G   T++   +++ +  + G +  A+ +  ++
Sbjct: 238 VSTLSACIALKM-LELGKEIHRYVREQLGF--TIKIGNALVDMYCKCGHLSIAREIFNDM 294

Query: 433 GFGSYGVVWRALLSASGACSDLDVAR 458
              +  + W +++S    C  LD AR
Sbjct: 295 PIKTV-ICWTSMVSGYVNCGQLDEAR 319


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 161/505 (31%), Positives = 259/505 (51%), Gaps = 44/505 (8%)

Query: 51  INSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSA 110
           I  +  A K+F E+    V+SWNS+ISGYV +G   K L+LF ++    I  D  +  S 
Sbjct: 198 IRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV 257

Query: 111 LAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI 170
           +A C   G L LG A+H   +K S  + + + NCL+DMY K G++  AI VF  M ++ +
Sbjct: 258 VAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSV 317

Query: 171 ISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIE-------- 218
           +SW S+IA  AR G  +++    H +     +PD  +   +++  A  G +E        
Sbjct: 318 VSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNY 377

Query: 219 ---------------------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVP-E 250
                                      DA  + S M   +  SWN+++ GY ++N +P E
Sbjct: 378 IKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGY-SKNSLPNE 436

Query: 251 ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLD 310
           AL+LF EMQ    P +  T + +L   A L+AL  G  IH  +++ G      VA+AL+D
Sbjct: 437 ALNLFVEMQYNSKP-NSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVD 495

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370
           MY KCG + +A  +F  +  K+LV+W  MI GY  +G  ++ I  F +++    ++PD V
Sbjct: 496 MYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRN-SGIEPDEV 554

Query: 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
           +F+++L ACSH+ +  D+   +F  M  +  I+P  EH   ++ L+ + G + +A + I+
Sbjct: 555 SFISILYACSHSGL-LDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIK 613

Query: 431 ELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490
            +       +W ALL       D+ +A   A  V +LE ++   YV+L N+Y     W+ 
Sbjct: 614 MMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEE 673

Query: 491 ASVMRNFMRERGLRKEAGCSWIEVE 515
              +R  +  RGLRK  GCSWIE++
Sbjct: 674 VKKLRERIGRRGLRKNPGCSWIEIK 698



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 151/316 (47%), Gaps = 16/316 (5%)

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           +  +N  I  + + G  R+A+ L  +  + ++  +  ++ S L  C  L S+Q G  IHS
Sbjct: 68  ITDYNIEICRFCELGNLRRAMELINQSPKPDL--ELRTYCSVLQLCADLKSIQDGRRIHS 125

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
            I    +E   V+ + L+ MY  CG + +   +F ++ ++ +  WN ++   A+ GN   
Sbjct: 126 IIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRE 185

Query: 189 AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV 248
           +     R+             GI +   +E A  +   +   +  SWNS+++GYV+    
Sbjct: 186 SLSLFKRMREL----------GIRR---VESARKLFDELGDRDVISWNSMISGYVSNGLS 232

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
            + L LF +M    +  D  T  ++++G +    L  G  +H   IK      + + + L
Sbjct: 233 EKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCL 292

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           LDMYSK G +  A  +F ++  +++V+W +MI GYAR G     + LF +++    + PD
Sbjct: 293 LDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEK-EGISPD 351

Query: 369 SVTFLNVLAACSHTDI 384
             T   +L AC+ T +
Sbjct: 352 IFTITTILHACACTGL 367



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 145/284 (51%), Gaps = 46/284 (16%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + +  +L A +  G     + +H YI ++   S++FVS ALM  Y K  S+ DAH +
Sbjct: 350 PDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSV 409

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+    +VSWN++I GY ++    +ALNLFVE++ +    ++ +    L AC  L +L
Sbjct: 410 FSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASLAAL 468

Query: 121 QLGMAIHSKIVK--YSLERGVVIANCLIDMYGKCGSV----------------------- 155
           + G  IH  I++  +SL+R V  AN L+DMY KCG++                       
Sbjct: 469 ERGQEIHGHILRNGFSLDRHV--ANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIA 526

Query: 156 --------EDAIGVFGEM----IDKDIISWNSVIAASARNGNLELAFGFLHRLPN----- 198
                    +AI  F EM    I+ D +S+ S++ A + +G L+  +GF + + N     
Sbjct: 527 GYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIE 586

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMP-SPNSSSWNSILTG 241
           P +  Y  +++ +A+ G++  A   +  MP  P+++ W ++L G
Sbjct: 587 PKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCG 630



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 31/221 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  +L A + L      Q++H +IL++GF  +  V+ AL+  Y K  +L  A  +
Sbjct: 450 PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLL 509

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP+  +VSW  +I+GY   G   +A+  F E+  S I  D  SF S L AC   G L
Sbjct: 510 FDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLL 569

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G         +++ R     NC I+   +                     +  ++   
Sbjct: 570 DEGWGF------FNMMRN----NCCIEPKSE--------------------HYACIVDLL 599

Query: 181 ARNGNLELAFGFLHRLP-NPDTISYNEVINGIAQFGDIEDA 220
           AR GNL  A+ F+  +P  PD   +  ++ G   + D++ A
Sbjct: 600 ARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLA 640


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 145/471 (30%), Positives = 265/471 (56%), Gaps = 10/471 (2%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           K   +A+A ++F  +P  +VVSWN++I+ YVQ  +  +A+ LF ++     + D+ S+T+
Sbjct: 247 KYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMP----HKDSVSWTT 302

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
            +    ++G L     +++++    +     + + LI    + G +++A  +F  +   D
Sbjct: 303 IINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLI----QNGRIDEADQMFSRIGAHD 358

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           ++ WNS+IA  +R+G ++ A     ++P  +++S+N +I+G AQ G ++ A  I  +M  
Sbjct: 359 VVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMRE 418

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            N  SWNS++ G++  N   +AL     M  +    D+ TF+  LS  A L+AL  G  +
Sbjct: 419 KNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQVGNQL 478

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H  ++K G    + V +AL+ MY+KCG+V+ A+ +FR +   +L++WN++I+GYA NG  
Sbjct: 479 HEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISGYALNGYA 538

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409
            K  + FEQ+ + R + PD VTF+ +L+ACSH  +  ++  + F+ M +D+ I+P  EH 
Sbjct: 539 NKAFKAFEQMSSER-VVPDEVTFIGMLSACSHAGLA-NQGLDIFKCMIEDFAIEPLAEHY 596

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469
             ++ L+G+ G +  A   +R +   +   +W +LL A     +L++ R +A  + +LE 
Sbjct: 597 SCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGSLLGACRVHKNLELGRFAAERLFELEP 656

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAH 520
            +   Y+ L N++   G W+    +R  MR +   K+ GCSWIEV+N   H
Sbjct: 657 HNASNYITLSNMHAEAGRWEEVERVRMLMRGKRAGKQPGCSWIEVQNQIQH 707



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 186/364 (51%), Gaps = 21/364 (5%)

Query: 35  LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE 94
           L N+     ++  Y   N + +A ++F  +P+    SW  +I+ Y + GK  KA  L   
Sbjct: 76  LRNLVSWNTMIAGYLHNNMVEEASELFDVMPERDNFSWALMITCYTRKGKLEKAREL--- 132

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           LE      D   + + +A   + G          K+ +    + +V  N ++  Y + G 
Sbjct: 133 LELVPDKLDTACWNAMIAGYAKKGQFNDA----KKVFEQMPAKDLVSYNSMLAGYTQNGK 188

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQF 214
           +  A+  F  M +++++SWN ++A   ++G+L  A+    ++PNP+ +S+  ++ G+A++
Sbjct: 189 MHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKY 248

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G + +A  +   MPS N  SWN+++  YV   +V EA+ LF +M  K    D  +++T++
Sbjct: 249 GKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHK----DSVSWTTII 304

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
           +G   +  L     +++ +  + + A   + S L+    + G+++ AD MF  +   ++V
Sbjct: 305 NGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLI----QNGRIDEADQMFSRIGAHDVV 360

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFE 394
            WN+MI GY+R+G + + + LF Q+        +SV++  +++  +      D+ +E F+
Sbjct: 361 CWNSMIAGYSRSGRMDEALNLFRQMPI-----KNSVSWNTMISGYAQAG-QMDRATEIFQ 414

Query: 395 SMTK 398
           +M +
Sbjct: 415 AMRE 418



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 127/273 (46%), Gaps = 27/273 (9%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           Y +   +  A ++F  + + ++VSWNSLI+G++Q+  Y  AL   V + +     D  +F
Sbjct: 400 YAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTF 459

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
              L+AC  L +LQ+G  +H  I+K      + + N LI MY KCG V+ A  VF ++  
Sbjct: 460 ACTLSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIEC 519

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMI 223
            D+ISWNS+I+  A NG    AF    ++ +    PD +++  +++  +  G     + I
Sbjct: 520 VDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLDI 579

Query: 224 LSSM-----PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
              M       P +  ++ ++       R+ EA +    M+ K                A
Sbjct: 580 FKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVK--------------ANA 625

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           GL    WG L+ +C + + L+     A  L ++
Sbjct: 626 GL----WGSLLGACRVHKNLELGRFAAERLFEL 654



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 153/316 (48%), Gaps = 19/316 (6%)

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
           N  I   GK G VE+AI +F  M  K+++++NS+I+  A+N  +  A     ++   + +
Sbjct: 21  NRQIIQLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLV 80

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
           S+N +I G      +E+A  +   MP  ++ SW  ++T Y  + ++ +A  L   +  K 
Sbjct: 81  SWNTMIAGYLHNNMVEEASELFDVMPERDNFSWALMITCYTRKGKLEKARELLELVPDK- 139

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
             +D   ++ M++G A              V +Q     +V  +++L  Y++ G++ +A 
Sbjct: 140 --LDTACWNAMIAGYAKKGQFNDA----KKVFEQMPAKDLVSYNSMLAGYTQNGKMHLAL 193

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
             F S+  +N+V+WN M+ GY ++GDL+   +LFE++       P++V+++ +L   +  
Sbjct: 194 QFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPN-----PNAVSWVTMLCGLA-- 246

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
              + K++E  E    D      V    +MI    Q  +V  A ++ +++      V W 
Sbjct: 247 --KYGKMAEARELF--DRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHKD-SVSWT 301

Query: 443 ALLSASGACSDLDVAR 458
            +++       LD AR
Sbjct: 302 TIINGYIRVGKLDEAR 317



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 102/198 (51%), Gaps = 2/198 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++      L A ++L       QLH YILKSG+++++FV  AL+  Y K   +  A ++
Sbjct: 454 PDQSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQV 513

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +I    ++SWNSLISGY  +G   KA   F ++    +  D  +F   L+AC   G  
Sbjct: 514 FRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLA 573

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIG-VFGEMIDKDIISWNSVIA 178
             G+ I   +++ +++E      +CL+D+ G+ G +E+A   V G  +  +   W S++ 
Sbjct: 574 NQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGSLLG 633

Query: 179 ASARNGNLELAFGFLHRL 196
           A   + NLEL      RL
Sbjct: 634 ACRVHKNLELGRFAAERL 651


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  268 bits (685), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 145/475 (30%), Positives = 267/475 (56%), Gaps = 11/475 (2%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           T L GF R    +A+A ++F ++P  +VV+WN++I+ YVQ+    +A++LF+E+      
Sbjct: 238 TMLCGFAR-FGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEK--- 293

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            ++ S+T+ +    ++G L     + +++      R V     +I  Y +   ++DA  +
Sbjct: 294 -NSISWTTVINGYVRMGKLDEARQLLNQMPY----RNVAAQTAMISGYVQNKRMDDARQI 348

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F ++  +D++ WN++IA  ++ G ++ A     ++   D +S+N ++   AQ G ++ AI
Sbjct: 349 FNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAI 408

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            I   M   N  SWNS+++G        +AL  F  M  +    D+ TF+  LS  A L+
Sbjct: 409 KIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLA 468

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL  G  +H  V+K G    + V++AL+ MY+KCG +  A+ +F+ +   ++V+WN++I 
Sbjct: 469 ALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIA 528

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            YA NG+  + ++LF +++ V  + PD VTF+ +L+ACSH  +  D+  + F+ M + Y 
Sbjct: 529 AYALNGNGREALKLFHKME-VEGVAPDEVTFVGILSACSHVGL-IDQGLKLFKCMVQAYN 586

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I+P  EH   M+ L+G+ G +  A +++R +   +   +W ALL A     +L++A+ +A
Sbjct: 587 IEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAA 646

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++++ E      YV+L N+    G WD  + +R  M+E+G  K+ G SWIE++N
Sbjct: 647 EKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQN 701



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 180/383 (46%), Gaps = 69/383 (18%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL 95
            N     +++  + K   ++DA ++F  +PQ ++VSWNS+I+ Y+ + +  +A  LF ++
Sbjct: 44  KNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKM 103

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
                  D YS+T  +    + G L     + + ++ Y      V  N ++  Y K    
Sbjct: 104 PTR----DLYSWTLMITCYTRNGELAKARNLFN-LLPYKW--NPVCCNAMVAGYAKNRQF 156

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARNGNLEL--------------------------- 188
           ++A  +F  M  KD++SWNS++    RNG + L                           
Sbjct: 157 DEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVG 216

Query: 189 ----AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
               ++ F  ++PNP+T+S+  ++ G A+FG I +A  +   MP  N  +WN+++  YV 
Sbjct: 217 DLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQ 276

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL----------------TWGML 288
              V EA+ LF EM  K    +  +++T+++G   +  L                    +
Sbjct: 277 NCHVDEAISLFMEMPEK----NSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAM 332

Query: 289 IHSCVIKQGLDAS-----------IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
           I   V  + +D +           +V  + ++  YS+CG+++ A  +F+ + +K++V+WN
Sbjct: 333 ISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWN 392

Query: 338 AMITGYARNGDLTKVIELFEQLK 360
            M+  YA+ G +   I++FE++K
Sbjct: 393 TMVASYAQVGQMDAAIKIFEEMK 415



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 139/292 (47%), Gaps = 27/292 (9%)

Query: 28  YILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRK 87
           ++ K     ++     ++  Y ++  +  A K+F E+ + ++VSWNSLISG  Q+G Y  
Sbjct: 378 HLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLD 437

Query: 88  ALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLID 147
           AL  F+ +       D  +F   L++C  L +LQ+G  +H  ++K      + ++N LI 
Sbjct: 438 ALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALIT 497

Query: 148 MYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTIS 203
           MY KCGS+  A  +F ++   D++SWNS+IAA A NGN   A    H++      PD ++
Sbjct: 498 MYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVT 557

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPS-----PNSSSWNSILTGYVNRNRVPEALHLFGEM 258
           +  +++  +  G I+  + +   M       P +  +  ++       R+ EA  L   M
Sbjct: 558 FVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGM 617

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLD 310
           +              ++  AG+    WG L+ +C I   L+ +   A  LL+
Sbjct: 618 K--------------INANAGI----WGALLGACRIHGNLELAKFAAEKLLE 651



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 100/169 (59%), Gaps = 2/169 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH  ++KSG+ +++FVS AL+  Y K  S++ A  +F +I    VVSWNSLI+ Y  +
Sbjct: 474 KQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALN 533

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK-YSLERGVVI 141
           G  R+AL LF ++E   +  D  +F   L+AC  +G +  G+ +   +V+ Y++E     
Sbjct: 534 GNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEH 593

Query: 142 ANCLIDMYGKCGSVEDAIG-VFGEMIDKDIISWNSVIAASARNGNLELA 189
             C++D+ G+ G +E+A   V G  I+ +   W +++ A   +GNLELA
Sbjct: 594 YACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELA 642



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 162/361 (44%), Gaps = 53/361 (14%)

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
           N  I   GK G +++AI VF  M  K+ ++ NS+I+A A+NG +                
Sbjct: 19  NLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRI---------------- 62

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                           DA  +   MP  N  SWNS++  Y++ +RV EA  LF +M ++D
Sbjct: 63  ---------------SDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRD 107

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +    Y+++ M++       L     + + +  +    + V  +A++  Y+K  Q + A 
Sbjct: 108 L----YSWTLMITCYTRNGELAKARNLFNLLPYKW---NPVCCNAMVAGYAKNRQFDEAR 160

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F ++  K+LV+WN+M+TGY RNG++   ++ FE++   RD     V   N++      
Sbjct: 161 RLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAE-RD-----VVSWNLMVDGFVE 214

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
               +   E+FE +       P      +M+    + G++  A+R+  ++   +  V W 
Sbjct: 215 VGDLNSSWEFFEKIP-----NPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNV-VAWN 268

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
           A+++A      +D A    +  +++   +   +  + N Y   G  D A  + N M  R 
Sbjct: 269 AMIAAYVQNCHVDEA---ISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN 325

Query: 503 L 503
           +
Sbjct: 326 V 326



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 126/279 (45%), Gaps = 47/279 (16%)

Query: 116 QLG-SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN 174
           QLG S Q+  AI  K+ ++   +  V  N +I  + K G + DA  +F  M  ++I+SWN
Sbjct: 24  QLGKSGQIDEAI--KVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWN 81

Query: 175 SVIAASARNGNLELAFGFLHRLPNPDTISY------------------------------ 204
           S+IAA   N  +E A     ++P  D  S+                              
Sbjct: 82  SMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLLPYKWNPV 141

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N ++ G A+    ++A  +  +MP+ +  SWNS+LTGY     +   L  F EM  +D
Sbjct: 142 CCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERD 201

Query: 263 VPMDEYTFSTMLSGIAGLSAL--TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           V     +++ M+ G   +  L  +W         ++  + + V    +L  +++ G++  
Sbjct: 202 V----VSWNLMVDGFVEVGDLNSSWEFF------EKIPNPNTVSWVTMLCGFARFGKIAE 251

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           A  +F  +  +N+V WNAMI  Y +N  + + I LF ++
Sbjct: 252 ARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEM 290


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  268 bits (685), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 162/518 (31%), Positives = 262/518 (50%), Gaps = 34/518 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      LL+A + L    Y   +   +L  GF ++VFV  A M F    +S+A+A K+
Sbjct: 118 PDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKL 177

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYADAYSFTSALAACGQLGS 119
           F       +VSWN+LI GYV+ G  R+AL +F  +     +  D  +    ++   QL  
Sbjct: 178 FDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRD 237

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+LG  +H  +  + +   V + N ++DMY KCG +E A  VF  +  K I+SW ++I  
Sbjct: 238 LELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIV- 296

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
                                         G AQFG ++DA  +   MP  +   WN+++
Sbjct: 297 ------------------------------GYAQFGLMDDARKVFDEMPERDVFPWNALM 326

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           TGYV   R  EAL LF +MQ   V  D+ T   +LS  + L AL  GM +H  + ++ + 
Sbjct: 327 TGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVS 386

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            S+++ + L+DMYSKCG +E A  +F+ +  KN +TW AMI+G A +G     I+ F+++
Sbjct: 387 LSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRM 446

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
             +  LQPD +TF+ VL+AC H  +   +  E+F  M   Y ++  ++H   M+ L+G+ 
Sbjct: 447 IEL-GLQPDEITFIGVLSACCHAGL-VKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRA 504

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G +  A+ ++  +      VVW AL  A     ++ +   +A ++++L+     +YV+L 
Sbjct: 505 GYLDEAEHLVNTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPGDSGIYVLLA 564

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           N+Y        A  +R  MR  G+ K  GCS IE+  V
Sbjct: 565 NMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGV 602


>gi|347954464|gb|AEP33732.1| chlororespiratory reduction 21, partial [Draba nemorosa]
          Length = 829

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 151/524 (28%), Positives = 279/524 (53%), Gaps = 10/524 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +   L AS+++G     +Q H   + +G   +  + T+++ FY K+  +  A  +
Sbjct: 267 PTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMI 326

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  VV+WN LISGYVQ G    A+++   + R  +  D  + +S ++A  +  +L
Sbjct: 327 FDRMIEKDVVTWNLLISGYVQQGLVEDAIHMCQLMRRGNLNFDCVTLSSLMSAAARTHNL 386

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +    +++     +V+A+  ++MY KCGS+ DA  VF   ++KD+I WN+++AA 
Sbjct: 387 KLGKEVQCYCIRHGFVSDIVLASTAVEMYAKCGSIVDAKKVFNSTVEKDLILWNTLLAAY 446

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDA----IMILSSMPSPNS 232
           A  G    A    + +      P+ I++N VI  + + G + +A    + + SS  SPN 
Sbjct: 447 AEPGLSGEALRLFYEMQLEGVPPNVITWNSVILSLLRNGQVNEAKDMFLQMQSSGISPNL 506

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
            SW +++ G V      EA+    +MQ   + ++ ++ +  LS  A L++L +G  IH  
Sbjct: 507 ISWTTMMNGLVQNGCSEEAIVYLRKMQESGLRLNVFSITVALSACANLASLHFGRSIHGY 566

Query: 293 VIK-QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
           +I+ Q   +S+ + ++L+DMY+KCG +  A+ +F S     L  +NAMI+ YA  G++ +
Sbjct: 567 IIRNQHHSSSVSIETSLVDMYAKCGDISKAERVFGSKLYSELPLYNAMISAYALYGNVKE 626

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411
              L+  L     ++PD++T  NVL+AC H     ++    F  M   + +KP +EH   
Sbjct: 627 ATALYRSLDEDVGIEPDNITITNVLSACHHAG-DINQAIHIFTDMVSKHAMKPCLEHYGL 685

Query: 412 MIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471
           M+ L+   GE  +A R+I E+ +     + ++LL++       ++    +  +++ E ++
Sbjct: 686 MVDLLASAGETEKALRLIEEMPYKPDARMIQSLLASCNKQHKSELVEYLSRHLLESEPEN 745

Query: 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
              YV + N+Y   G+WD    MR  M+ +GL+K+ GCSWI+++
Sbjct: 746 SGNYVTISNVYAVEGSWDEVGKMREMMKVKGLKKKPGCSWIQIK 789



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 136/521 (26%), Positives = 238/521 (45%), Gaps = 51/521 (9%)

Query: 23  QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           QQ+H  ILK+G  +  N ++ T L+ FY K ++L  A  +F ++   +V SW ++I    
Sbjct: 85  QQIHARILKNGDFYAKNEYIETKLVIFYAKCDALEVAQLLFSKLRARNVFSWAAIIGVRC 144

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + G    AL  FVE+  + ++ D +   +   ACG L   + G  +H  + K  L   V 
Sbjct: 145 RIGLVEGALMGFVEMLENGLFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVF 204

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP- 199
           +A+ L DMYGKCG ++DA  VF E+ D+ +++WN+++    +NG  + A   L  + N  
Sbjct: 205 VASSLADMYGKCGLLDDARKVFDEIPDRTVVAWNALMVGYVQNGMNQEAIRLLSAMRNEG 264

Query: 200 --------------------------------------DTISYNEVINGIAQFGDIEDAI 221
                                                 D I    ++N   + G IE A 
Sbjct: 265 IEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAE 324

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           MI   M   +  +WN +++GYV +  V +A+H+   M+  ++  D  T S+++S  A   
Sbjct: 325 MIFDRMIEKDVVTWNLLISGYVQQGLVEDAIHMCQLMRRGNLNFDCVTLSSLMSAAARTH 384

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  +    I+ G  + IV+AS  ++MY+KCG +  A  +F S   K+L+ WN ++ 
Sbjct: 385 NLKLGKEVQCYCIRHGFVSDIVLASTAVEMYAKCGSIVDAKKVFNSTVEKDLILWNTLLA 444

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            YA  G   + + LF +++ +  + P+ +T+ +V+ +        ++  + F  M +  G
Sbjct: 445 AYAEPGLSGEALRLFYEMQ-LEGVPPNVITWNSVILSLLRNG-QVNEAKDMFLQM-QSSG 501

Query: 402 IKPTVEHCCSMIRLMGQKG---EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           I P +    +M+  + Q G   E     R ++E G           LSA    + L   R
Sbjct: 502 ISPNLISWTTMMNGLVQNGCSEEAIVYLRKMQESGLRLNVFSITVALSACANLASLHFGR 561

Query: 459 ISAAEVIKLEGDSDYVYV--MLCNLYTSHGNWDVASVMRNF 497
                +I+ +  S  V +   L ++Y   G  D++   R F
Sbjct: 562 SIHGYIIRNQHHSSSVSIETSLVDMYAKCG--DISKAERVF 600



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 212/485 (43%), Gaps = 97/485 (20%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +V+ ++ +A   L W  + + +H Y+ K+G    VFV+++L   Y K   L DA K+
Sbjct: 166 PDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVFVASSLADMYGKCGLLDDARKV 225

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EIP  +VV+WN+L+ GYVQ+G  ++A+ L   +    I     + ++ L+A   +G +
Sbjct: 226 FDEIPDRTVVAWNALMVGYVQNGMNQEAIRLLSAMRNEGIEPTRVTVSTCLSASANMGGI 285

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN------ 174
           + G   H+  +   LE   ++   +++ Y K G +E A  +F  MI+KD+++WN      
Sbjct: 286 EEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISGY 345

Query: 175 -----------------------------SVIAASARNGNLELA---------FGFLHRL 196
                                        S+++A+AR  NL+L           GF+   
Sbjct: 346 VQQGLVEDAIHMCQLMRRGNLNFDCVTLSSLMSAAARTHNLKLGKEVQCYCIRHGFV--- 402

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
              D +  +  +   A+ G I DA  + +S    +   WN++L  Y       EAL LF 
Sbjct: 403 --SDIVLASTAVEMYAKCGSIVDAKKVFNSTVEKDLILWNTLLAAYAEPGLSGEALRLFY 460

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           EMQ + VP +                +TW  +I S +                    + G
Sbjct: 461 EMQLEGVPPN---------------VITWNSVILSLL--------------------RNG 485

Query: 317 QVEIADSMFRSL----CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
           QV  A  MF  +       NL++W  M+ G  +NG   + I    +++    L+ +  + 
Sbjct: 486 QVNEAKDMFLQMQSSGISPNLISWTTMMNGLVQNGCSEEAIVYLRKMQE-SGLRLNVFSI 544

Query: 373 LNVLAACSH-TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431
              L+AC++   + F +    +    + +    ++E   S++ +  + G++ +A+R+   
Sbjct: 545 TVALSACANLASLHFGRSIHGYIIRNQHHSSSVSIE--TSLVDMYAKCGDISKAERV--- 599

Query: 432 LGFGS 436
             FGS
Sbjct: 600 --FGS 602



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 14/223 (6%)

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
           +P S S+   ++    +  + EAL L  EM S++V +    +  +L G      L+ G  
Sbjct: 27  NPPSISYFHRVSSLCKKGEIREALGLVTEMGSRNVRIGPEIYGEILQGCVYERDLSTGQQ 86

Query: 289 IHSCVIKQG--LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR- 345
           IH+ ++K G     +  + + L+  Y+KC  +E+A  +F  L  +N+ +W A+I    R 
Sbjct: 87  IHARILKNGDFYAKNEYIETKLVIFYAKCDALEVAQLLFSKLRARNVFSWAAIIGVRCRI 146

Query: 346 ---NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
               G L   +E+ E       L PD+    NV  AC    + + +            G+
Sbjct: 147 GLVEGALMGFVEMLEN-----GLFPDNFVVPNVCKACG--ALQWSRFGRGVHGYVAKAGL 199

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
              V    S+  + G+ G +  A+++  E+   +  V W AL+
Sbjct: 200 HDCVFVASSLADMYGKCGLLDDARKVFDEIPDRTV-VAWNALM 241


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 145/480 (30%), Positives = 258/480 (53%), Gaps = 10/480 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV   TAL+  Y +   + +A  +F  +P+ +VVSWN+++  Y  +G+ R A  LF  + 
Sbjct: 97  NVVTWTALLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMP 156

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
                 DA S+   LAA  + G++     +  ++     ER V+    ++    + GSV+
Sbjct: 157 ----VRDAGSWNILLAALVRSGNMDKARKLFDRMP----ERNVMAWTTMVAGIARSGSVD 208

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           +A  +F  M +++++SWN++I+  ARN  ++ A     ++P  D  S+N +I G  Q  D
Sbjct: 209 EARALFDGMPERNVVSWNAMISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRD 268

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           +E A  +   MP  N  +W +++ GY+   +   AL +F  M  + +  ++ TF   +  
Sbjct: 269 LERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDA 328

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            + L+ L+ G  +H  + K        + S L+++Y+KCG++ +A  +F     K++++W
Sbjct: 329 CSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISW 388

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           N MI  YA +G   + I L+E+++  +  +P+ VT++ +L+ACSH+ +  D+    FE M
Sbjct: 389 NGMIAAYAHHGVGVEAIHLYEKMQE-KGYKPNDVTYVGLLSACSHSGL-VDEGLRIFEYM 446

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
            KD  I    EH   +I L  + G +  A+R+I  L       VW ALL    +  +  +
Sbjct: 447 VKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESI 506

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
             ++A  +++ E ++   Y +LCN+Y S G W  A+ +R+ M +RGL+K+ GCSWIEVEN
Sbjct: 507 GDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVEN 566



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 125/262 (47%), Gaps = 43/262 (16%)

Query: 152 CGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT----ISYNEV 207
            G V DA  +F    D+D++SW +++AA AR G L  A     R   PD     +++  +
Sbjct: 48  AGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDR---PDARRNVVTWTAL 104

Query: 208 INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
           ++G A+ G +++A  +   MP  N  SWN++L  Y +  RV +A  LF  M  +D     
Sbjct: 105 LSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRD----- 159

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS-----------IVVASALLDMYSKCG 316
                         A +W +L+ + V    +D +           ++  + ++   ++ G
Sbjct: 160 --------------AGSWNILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSG 205

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            V+ A ++F  +  +N+V+WNAMI+GYARN  + +  +LF ++ T RD     +   N++
Sbjct: 206 SVDEARALFDGMPERNVVSWNAMISGYARNHRIDEAHDLFMKMPT-RD-----IASWNIM 259

Query: 377 AACSHTDIPFDKVSEYFESMTK 398
                 D   ++  + F+ M +
Sbjct: 260 ITGFIQDRDLERAQDLFDKMPR 281



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 13/236 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+      + A S+L   +  QQ+H  I K+ F  + F+ + LM  Y K   +  A K+
Sbjct: 317 PNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKV 376

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +  V+SWN +I+ Y   G   +A++L+ +++      +  ++   L+AC   G +
Sbjct: 377 FDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLV 436

Query: 121 QLGMAIHSKIVKYSLERGVVIAN----CLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNS 175
             G+ I   +VK   +R + + +    CLID+  + G + DA  +   + ++     WN+
Sbjct: 437 DEGLRIFEYMVK---DRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNA 493

Query: 176 VIAASARNGNLEL----AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           ++     +GN  +    A   L   PN +  +Y  + N  A  G  ++A  I S M
Sbjct: 494 LLGGCNSHGNESIGDLAARNLLEAEPN-NAGTYTLLCNIYASAGKWKEAAKIRSEM 548


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 178/588 (30%), Positives = 299/588 (50%), Gaps = 75/588 (12%)

Query: 2   NEYVLFHLLRASSDLGWDTYC-QQLHCYILKSGFLS--NVFVSTALMGFYRKINSLADAH 58
           + + L  +L A S L  D    ++ H + LK+GFL     F   AL+  Y ++  + DA 
Sbjct: 161 SSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQ 220

Query: 59  KMFVEI-----PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
            +F  +     P   VV+WN+++S  VQSG+  +A+ +  ++    +  D  +F SAL A
Sbjct: 221 MLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPA 280

Query: 114 CGQLGSLQLGMAIHSKIVKYS-LERGVVIANCLIDMYGKCGSVEDAIGVFGEMID---KD 169
           C QL  L LG  +H+ ++K S L     +A+ L+DMY     V  A  VF +M+    + 
Sbjct: 281 CSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVF-DMVPGGHRQ 339

Query: 170 IISWNSVIAASARNGNLELAFGFLHRL-------PNPDTIS------------------- 203
           +  WN+++   A+ G  E A     R+       P+  TI+                   
Sbjct: 340 LGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVH 399

Query: 204 --------------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
                          N +++  A+ GD+E A  I +++   +  SWN+++TG V +  + 
Sbjct: 400 GYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIH 459

Query: 250 EALHLFGEMQSK------------------DVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
           +A  L  EMQ +                   V  +  T  T+L G A L+A   G  IH 
Sbjct: 460 DAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHG 519

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
             ++  LD+ I V SAL+DMY+KCG + ++ ++F  L ++N++TWN +I  Y  +G   +
Sbjct: 520 YAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDE 579

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE-HCC 410
            I LF+++    + +P+ VTF+  LAACSH+ +  D+  E F SM +++G++PT + H C
Sbjct: 580 AIALFDRMVMSNEAKPNEVTFIAALAACSHSGM-VDRGMELFHSMKRNHGVQPTPDLHAC 638

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGV-VWRALLSASGACSDLDVARISAAEVIKLEG 469
           + + ++G+ G +  A  +I  +  G   V  W + L A     ++ +  I+A  + +LE 
Sbjct: 639 A-VDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEP 697

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           D    YV+LCN+Y++ G W+ +S +RN MR+RG+ KE GCSWIE++ V
Sbjct: 698 DEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGV 745



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 172/376 (45%), Gaps = 54/376 (14%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV--IANCLIDMYGKCGSVEDAIG 160
           D ++   A  +   L SL    +IH   ++  L  G    +AN L+  Y +CG +  A+ 
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALA 117

Query: 161 VFGEMIDKDIISWNSVIAA----------------------------------------- 179
           +F  M  +D +++NS+IAA                                         
Sbjct: 118 LFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAE 177

Query: 180 SARNGNLELAFGFLHRLPNPDT-ISYNEVINGIAQFGDIEDAIMILSSMPSPNSS----- 233
             R G    AF   +   + D   ++N +++  A+ G ++DA M+  S+ + +S      
Sbjct: 178 DLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVV 237

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           +WN++++  V   R  EA+ +  +M ++ V  D  TF++ L   + L  L+ G  +H+ V
Sbjct: 238 TWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYV 297

Query: 294 IKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDLT 350
           +K   L A+  VASAL+DMY+   +V +A  +F  +    + L  WNAM+ GYA+ G   
Sbjct: 298 LKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDE 357

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + +ELF +++    + P   T   VL AC+ ++    K + +   + +     P V++  
Sbjct: 358 EALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQN-- 415

Query: 411 SMIRLMGQKGEVWRAQ 426
           +++ L  + G++  A+
Sbjct: 416 ALMDLYARLGDMEAAR 431



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 13/125 (10%)

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL--DASIVVASALLDMYSKCGQVEIA 321
           P+D +         A L +L     IH   +++ L    +  VA+ALL  Y++CG +  A
Sbjct: 56  PLDHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAA 115

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL----QP-DSVTFLNVL 376
            ++F ++  ++ VT+N++I        L         L  +RD+     P  S T ++VL
Sbjct: 116 LALFNAMPSRDAVTFNSLIAA------LCLFRRWLPALDALRDMLLEGHPLSSFTLVSVL 169

Query: 377 AACSH 381
            ACSH
Sbjct: 170 LACSH 174


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 161/519 (31%), Positives = 260/519 (50%), Gaps = 35/519 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      LL+A + L    Y      ++L+ G  S+VFV  A   F      + DA ++
Sbjct: 123 PDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRL 182

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL--ERSEIYADAYSFTSALAACGQLG 118
           F   P   +VSWN+LI GYV+ G   +AL LF  +  E + +  D  +  +A++ CGQ+ 
Sbjct: 183 FDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMR 242

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            L+LG  +H  +    +   V + N L+DMY KCGS+E A  VF                
Sbjct: 243 DLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVF---------------- 286

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
                           R+ +   +S+  +I G A+FG ++DA  +   MP  +   WN++
Sbjct: 287 ---------------ERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNAL 331

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           +TGYV   +  EAL LF EMQ   V  DE T   +L+  + L AL  GM +H  + K  L
Sbjct: 332 MTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRL 391

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
             S+ + ++L+DMY+KCG +E A  +F+ +  KN +TW AMI G A +G   + IE F  
Sbjct: 392 VFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRT 451

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           +  +   +PD +TF+ VL+AC H  +   +  E+F  M   Y ++  ++H   MI L+G+
Sbjct: 452 MIELGQ-KPDEITFIGVLSACCHAGL-VKEGREFFSLMETKYHLERKMKHYSCMIDLLGR 509

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G +  A++++  +      VVW A+  A     ++ +   +A ++++++     +YV+L
Sbjct: 510 AGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSDSGIYVLL 569

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
            N+Y        A  +R  MR  G+ K  GCS IE+  V
Sbjct: 570 ANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCIELNGV 608



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 9/171 (5%)

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNR-----VPEALHLF-GEMQSKDVPMDEYTF 270
           +  A+ +LSS+P+   ++    L+   + +R     V   L L+   ++S     D  TF
Sbjct: 69  LRHALALLSSLPASAYNAAIRALSLSDDGDRHGHGVVRRCLPLYRALLRSGTARPDHLTF 128

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
             +L   A L    +G    + V++ GLD+ + V +A     S  G +E A  +F     
Sbjct: 129 PFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPV 188

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD--LQPDSVTFLNVLAAC 379
           ++LV+WN +I GY R G+  + +ELF ++    D  ++PD VT +  ++ C
Sbjct: 189 RDLVSWNTLIGGYVRRGNPAEALELFWRM-VAEDAVVRPDEVTMIAAVSGC 238


>gi|347954456|gb|AEP33728.1| chlororespiratory reduction 21, partial [Brassica oleracea]
          Length = 643

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 153/525 (29%), Positives = 282/525 (53%), Gaps = 13/525 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +   L AS+++G     +  H   + +G   +  + T+++ FY K+  +  A  +
Sbjct: 83  PTRVTVSTCLSASANMGGVEEGKXSHALAVVNGLELDNILGTSILNFYCKVGLIDYAEMV 142

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VV+WN LISGYVQ G    A+ +   +   ++  D  + ++ ++   +  + 
Sbjct: 143 FDRMIGKDVVTWNLLISGYVQQGLVEDAIRMCQLMRLEKLKFDCVTLSTLMSTAARTQNS 202

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +    +++S E  +V+A+  +DMY KCGS+ DA  VF   + KD+I WN+++AA 
Sbjct: 203 KLGKEVQCYCIRHSFESDIVLASAAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLAAY 262

Query: 181 ARNG----NLELAFGF-LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PN 231
           A +G     L L +   L  +P P+ I++N +I  + + G +++A  +   M S    P 
Sbjct: 263 AESGLSGEALRLFYEMQLESVP-PNVITWNLIILSLLRNGQVDEAKEMFLQMQSSGIVPT 321

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SW +++ G V      EA+H   +MQ   +  + ++ +  LS  A L++L +G  +H 
Sbjct: 322 IVSWTTMMNGLVXNGCSEEAIHYLRKMQESGMRPNVFSITVALSACANLASLHFGRSVHG 381

Query: 292 CVIKQGLDASIV-VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
            +I+  L +S V + ++L+DMY+KCG +  A+ +FR      L  +NAMI+ YA  G++ 
Sbjct: 382 YIIRNRLHSSSVSIETSLVDMYAKCGDISKAEKVFRRKLFSELPLYNAMISAYALYGNVE 441

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + + L+  L+ +  ++PD++TF N+L+AC+H     ++  E F  M   +G+KP +EH  
Sbjct: 442 EAMALYGSLEDM-GIKPDNITFTNILSACNHAG-DINQAIEIFSDMVSKHGVKPCLEHYG 499

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            M+ L+   GE  +A R++ E+ +     + ++LL+        ++    + ++++ E D
Sbjct: 500 LMVDLLASAGETEKALRLMEEMPYEPDARMIQSLLATCNKEHKTELVEYLSKQLLESEPD 559

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           +   YV + N Y   G+WD    MR  M+ +GL+K+ GCSWI V+
Sbjct: 560 NSGNYVTISNAYAGEGSWDEVVKMREMMKAKGLKKQPGCSWIRVK 604



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/467 (23%), Positives = 202/467 (43%), Gaps = 83/467 (17%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H Y+ KSG    VFV+++L   Y K   L DA K+F EIP+ +VV+WN+L+ GYVQ+G 
Sbjct: 6   VHGYVAKSGLDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGM 65

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
             +A+ L  ++    +     + ++ L+A   +G ++ G   H+  V   LE   ++   
Sbjct: 66  NEEAIRLMCDMREEGVEPTRVTVSTCLSASANMGGVEEGKXSHALAVVNGLELDNILGTS 125

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF--LHRLPN---- 198
           +++ Y K G ++ A  VF  MI KD+++WN +I+   + G +E A     L RL      
Sbjct: 126 ILNFYCKVGLIDYAEMVFDRMIGKDVVTWNLLISGYVQQGLVEDAIRMCQLMRLEKLKFD 185

Query: 199 ---------------------------------PDTISYNEVINGIAQFGDIEDAIMILS 225
                                             D +  +  ++  A+ G I DA  +  
Sbjct: 186 CVTLSTLMSTAARTQNSKLGKEVQCYCIRHSFESDIVLASAAVDMYAKCGSIVDAKKVFD 245

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           S    +   WN++L  Y       EAL LF EMQ + VP +                +TW
Sbjct: 246 STVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPN---------------VITW 290

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK----NLVTWNAMIT 341
            ++I S +                    + GQV+ A  MF  +        +V+W  M+ 
Sbjct: 291 NLIILSLL--------------------RNGQVDEAKEMFLQMQSSGIVPTIVSWTTMMN 330

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIPFDKVSEYFESMTKDY 400
           G   NG   + I    +++    ++P+  +    L+AC++   + F +    +    + +
Sbjct: 331 GLVXNGCSEEAIHYLRKMQE-SGMRPNVFSITVALSACANLASLHFGRSVHGYIIRNRLH 389

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
               ++E   S++ +  + G++ +A+++ R   F     ++ A++SA
Sbjct: 390 SSSVSIE--TSLVDMYAKCGDISKAEKVFRRKLFSELP-LYNAMISA 433



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 189/423 (44%), Gaps = 49/423 (11%)

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  +H  + K  L+  V +A+ L DMYGKCG ++DA  VF E+ ++++++WN+++    
Sbjct: 2   FGRGVHGYVAKSGLDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYV 61

Query: 182 RNGNLELAFGFL----------------------------------HRLP-----NPDTI 202
           +NG  E A   +                                  H L        D I
Sbjct: 62  QNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMGGVEEGKXSHALAVVNGLELDNI 121

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
               ++N   + G I+ A M+   M   +  +WN +++GYV +  V +A+ +   M+ + 
Sbjct: 122 LGTSILNFYCKVGLIDYAEMVFDRMIGKDVVTWNLLISGYVQQGLVEDAIRMCQLMRLEK 181

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +  D  T ST++S  A       G  +    I+   ++ IV+ASA +DMY+KCG +  A 
Sbjct: 182 LKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIRHSFESDIVLASAAVDMYAKCGSIVDAK 241

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F S  +K+L+ WN ++  YA +G   + + LF +++ +  + P+ +T+ N++      
Sbjct: 242 KVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQ-LESVPPNVITW-NLIILSLLR 299

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG---EVWRAQRMIRELGFGSYGV 439
           +   D+  E F  M +  GI PT+    +M+  +   G   E     R ++E G      
Sbjct: 300 NGQVDEAKEMFLQM-QSSGIVPTIVSWTTMMNGLVXNGCSEEAIHYLRKMQESGMRPNVF 358

Query: 440 VWRALLSASGACSDLDVARISAAEVI--KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497
                LSA    + L   R     +I  +L   S  +   L ++Y   G  D++   + F
Sbjct: 359 SITVALSACANLASLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCG--DISKAEKVF 416

Query: 498 MRE 500
            R+
Sbjct: 417 RRK 419


>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 165/523 (31%), Positives = 282/523 (53%), Gaps = 14/523 (2%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCY-ILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
            P    +   L AS++L      +Q H   IL S  L N+ + ++++ FY K+  + DA  
Sbjct: 1376 PTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNI-LGSSIINFYSKVGLIEDAEL 1434

Query: 60   MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLG 118
            +F  + +  VV+WN LIS YVQ  +  KALN+   L RSE +  D+ + +S L+A     
Sbjct: 1435 VFSRMLEKDVVTWNLLISSYVQHHQVGKALNM-CHLMRSENLRFDSVTLSSILSASAVTS 1493

Query: 119  SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            +++LG   H   ++ +LE  VV+AN +IDMY KC  ++DA  VF    ++D++ WN+++A
Sbjct: 1494 NIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLA 1553

Query: 179  ASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMPS----P 230
            A A+ G    A    +++      P+ IS+N VI G  + G + +A  + S M S    P
Sbjct: 1554 AYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQP 1613

Query: 231  NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
            N  +W ++++G        EA+  F +MQ   +     + +++L     + +L +G  IH
Sbjct: 1614 NLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIH 1673

Query: 291  SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
              + +     S+ VA++L+DMY+KCG ++ A  +F  +  K L  +NAMI+ YA +G   
Sbjct: 1674 GFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAV 1733

Query: 351  KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
            + + LF+ L+    ++PDS+TF ++L+ACSH  +  + ++  F  M   + + P +EH  
Sbjct: 1734 EALALFKHLQK-EGIEPDSITFTSILSACSHAGLVNEGLN-LFADMVSKHNMNPIMEHYG 1791

Query: 411  SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
             ++ L+ + G +  A R+I  + F     +  +LL+A     ++++    +  + KLE  
Sbjct: 1792 CVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPS 1851

Query: 471  SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
            +   YV L N Y + G W   S MR+ M+ RGLRK  GCSWI+
Sbjct: 1852 NSGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQ 1894



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 139/566 (24%), Positives = 269/566 (47%), Gaps = 89/566 (15%)

Query: 23   QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
            QQ+H  ILK+G  F  N +V T L+ FY K +    A ++F  +   +V SW +++    
Sbjct: 1194 QQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQC 1253

Query: 81   QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
            + G    AL  F+E++ + ++ D +   + L ACG L  + LG  +H  ++K      V 
Sbjct: 1254 RMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVF 1313

Query: 141  IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG---------------- 184
            +++ L+DMYGKCG +EDA  VF  M++K++++WNS+I    +NG                
Sbjct: 1314 VSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEG 1373

Query: 185  ----------------NLEL--------AFGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220
                            NL+         A   L+ L + D I  + +IN  ++ G IEDA
Sbjct: 1374 IEPTRVTVASFLSASANLDALIEGKQGHAIAILNSL-DLDNILGSSIINFYSKVGLIEDA 1432

Query: 221  IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             ++ S M   +  +WN +++ YV  ++V +AL++   M+S+++  D  T S++LS  A  
Sbjct: 1433 ELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVT 1492

Query: 281  SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
            S +  G   H   I++ L++ +VVA++++DMY+KC +++ A  +F S   ++LV WN ++
Sbjct: 1493 SNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLL 1552

Query: 341  TGYA-----------------------------------RNGDLTKVIELFEQLKTVRDL 365
              YA                                   RNG + +  ++F Q++++   
Sbjct: 1553 AAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSL-GF 1611

Query: 366  QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425
            QP+ +T+  +++  + +   ++ +  +F+ M ++ GI+P++    S++        +W  
Sbjct: 1612 QPNLITWTTLISGLAQSGFGYEAIL-FFQKM-QEAGIRPSIASITSVLLACTDIPSLWYG 1669

Query: 426  QRM---IRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY-VYVMLCNL 481
            + +   I    F     V  +L+     C  +D A+    +V  +    +  +Y  + + 
Sbjct: 1670 RAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAK----KVFHMMSSKELPIYNAMISA 1725

Query: 482  YTSHGNWDVASVMRNFMRERGLRKEA 507
            Y  HG    A  +   +++ G+  ++
Sbjct: 1726 YALHGQAVEALALFKHLQKEGIEPDS 1751



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 155/348 (44%), Gaps = 42/348 (12%)

Query: 76   ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS- 134
            IS   + G  +++++L  E+E  +       +   L  C    +L  G  IH++I+K   
Sbjct: 1146 ISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGD 1205

Query: 135  -LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA-FGF 192
               +   +   L+  Y KC   E A+ +F  +  +++ SW +++    R G  E A  GF
Sbjct: 1206 FFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGF 1265

Query: 193  LHRLPN---PDTISYNEVINGIAQF----------------------------------- 214
            +    N   PD      V+                                         
Sbjct: 1266 IEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKC 1325

Query: 215  GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
            G +EDA  +  SM   N  +WNS++ GYV      EA+ +F +M+ + +     T ++ L
Sbjct: 1326 GVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFL 1385

Query: 275  SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
            S  A L AL  G   H+  I   LD   ++ S++++ YSK G +E A+ +F  +  K++V
Sbjct: 1386 SASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVV 1445

Query: 335  TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            TWN +I+ Y ++  + K + +   +++  +L+ DSVT  ++L+A + T
Sbjct: 1446 TWNLLISSYVQHHQVGKALNMCHLMRS-ENLRFDSVTLSSILSASAVT 1492


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 160/527 (30%), Positives = 273/527 (51%), Gaps = 57/527 (10%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYA 102
           + G+ R  N L  A ++F  +P+  V SWN+++SGY Q+G    A  +F  + E++++  
Sbjct: 128 IKGYVRNRN-LGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSW 186

Query: 103 DA----YSFTSALA-ACGQLGSLQ----------LGMAIHSKIVKYSLE-------RGVV 140
           +A    Y   S L  AC   GS +          LG  +  K +  + +       R VV
Sbjct: 187 NALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVV 246

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
             N +I  Y + G +++A  +F E    D+ +W ++++   +N  +E A     R+P  +
Sbjct: 247 SWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERN 306

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +S+N ++ G  Q   +E A  +   MP  N S+WN+++TGY    ++ EA +LF +M  
Sbjct: 307 EVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPK 366

Query: 261 KDV-------------------------------PMDEYTFSTMLSGIAGLSALTWGMLI 289
           +D                                 ++  +FS+ LS  A + AL  G  +
Sbjct: 367 RDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQL 426

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H  ++K G +    V +ALL MY KCG +E A+ +F+ +  K++V+WN MI GY+R+G  
Sbjct: 427 HGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFG 486

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409
            + +  FE +K    L+PD  T + VL+ACSHT +  DK  +YF +MT+DYG++P  +H 
Sbjct: 487 EEALRFFESMKR-EGLKPDDATMVAVLSACSHTGL-VDKGRQYFHTMTQDYGVRPNSQHY 544

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469
             M+ L+G+ G +  A  +++ + F     +W  LL AS    + ++A  +A ++  +E 
Sbjct: 545 ACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEP 604

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           ++  +YV+L NLY S G W     +R  MR++G++K  G SWIE++N
Sbjct: 605 ENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQN 651



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 176/347 (50%), Gaps = 35/347 (10%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           Y +    ++A ++F  +P+ S VS+N++ISGY+++G++  A  LF E+       D  S+
Sbjct: 69  YMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPER----DLVSW 124

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
              +   G + +  LG A   ++ +   ER V   N ++  Y + G V+DA  VF  M +
Sbjct: 125 NVMIK--GYVRNRNLGKA--RELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPE 180

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           K+ +SWN++++A  +N  LE A        N   +S+N ++ G  +   I +A     SM
Sbjct: 181 KNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM 240

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
              +  SWN+I+TGY     + EA  LF E    DV    +T++ M+SG           
Sbjct: 241 KVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDV----FTWTAMVSG----------- 285

Query: 288 LIHSCVIKQGL-------DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
            I + ++++         + + V  +A+L  Y +  +VE+A  +F  +  +N+ TWN MI
Sbjct: 286 YIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMI 345

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387
           TGYA+ G +++   LF+++      + D V++  ++A  S +   ++
Sbjct: 346 TGYAQCGKISEAKNLFDKMP-----KRDPVSWAAMIAGYSQSGHSYE 387



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 126/247 (51%), Gaps = 17/247 (6%)

Query: 6   LFHLLRASSDLGWDT----YCQQLHCYILKSGF----LSNVFVSTALMGFYRKINSLADA 57
           LF  +   +++ W+     Y Q     + K  F      NV     ++  Y +   +++A
Sbjct: 298 LFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEA 357

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
             +F ++P+   VSW ++I+GY QSG   +AL LFV +ER     +  SF+SAL+ C  +
Sbjct: 358 KNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADV 417

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
            +L+LG  +H ++VK   E G  + N L+ MY KCGS+E+A  +F EM  KDI+SWN++I
Sbjct: 418 VALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMI 477

Query: 178 AASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMPS---- 229
           A  +R+G  E A  F   +      PD  +   V++  +  G ++       +M      
Sbjct: 478 AGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGV 537

Query: 230 -PNSSSW 235
            PNS  +
Sbjct: 538 RPNSQHY 544



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 124/257 (48%), Gaps = 43/257 (16%)

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
           +D   +  A+++  + G     + +  ++ ++S     V  N +I  Y + G  E A  +
Sbjct: 57  SDIKEWNVAISSYMRTGRCSEALRVFKRMPRWS----SVSYNAMISGYLRNGEFELARML 112

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F EM ++D++SWN +I    RN NL  A     R+P  D  S+N +++G AQ G ++DA 
Sbjct: 113 FDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDAR 172

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   MP  N  SWN++L+ YV  +++ EA  LFG  ++                     
Sbjct: 173 RVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSREN--------------------- 211

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
              W ++  +C               LL  + K  ++  A   F S+  +++V+WN +IT
Sbjct: 212 ---WALVSWNC---------------LLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIIT 253

Query: 342 GYARNGDLTKVIELFEQ 358
           GYA+NG++ +  +LF++
Sbjct: 254 GYAQNGEIDEARQLFDE 270



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 89/169 (52%), Gaps = 2/169 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH  ++K G+ +  FV  AL+  Y K  S+ +A+ +F E+    +VSWN++I+GY + 
Sbjct: 424 KQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 483

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA-IHSKIVKYSLERGVVI 141
           G   +AL  F  ++R  +  D  +  + L+AC   G +  G    H+    Y +      
Sbjct: 484 GFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQH 543

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLELA 189
             C++D+ G+ G +E+A  +   M  + D   W +++ AS  +GN ELA
Sbjct: 544 YACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELA 592



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 16/161 (9%)

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
           D+ I   +  +  Y + G+   A  +F+ + R + V++NAMI+GY RNG+      LF++
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG- 417
           +   RDL        NV+      +    K  E FE M       P  + C     L G 
Sbjct: 116 MPE-RDL-----VSWNVMIKGYVRNRNLGKARELFERM-------PERDVCSWNTILSGY 162

Query: 418 -QKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
            Q G V  A+R+   +   +  V W ALLSA    S L+ A
Sbjct: 163 AQNGCVDDARRVFDRMPEKN-DVSWNALLSAYVQNSKLEEA 202


>gi|356541211|ref|XP_003539074.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Glycine max]
          Length = 548

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 162/501 (32%), Positives = 263/501 (52%), Gaps = 11/501 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           ++LH +++ +GF     V++ L+ FY     L+ A K+F +IP  +V  W +LI    + 
Sbjct: 47  KKLHAHLVTNGFARFNVVASNLVSFYTCCGQLSHARKLFDKIPTTNVRRWIALIGSCARC 106

Query: 83  GKYRKALNLFVELERSEIYADAYSFT--SALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           G Y  AL +F E++  +     Y F   S L ACG +G    G  IH  I+K S E    
Sbjct: 107 GFYDHALAVFSEMQAVQGLTPNYVFVIPSVLKACGHVGDRITGEKIHGFILKCSFELDSF 166

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP--- 197
           +++ LI MY KC  VEDA  VF  M  KD ++ N+V+A   + G    A G +  +    
Sbjct: 167 VSSSLIVMYSKCAKVEDARKVFDGMTVKDTVALNAVVAGYVQQGAANEALGLVESMKLMG 226

Query: 198 -NPDTISYNEVINGIAQFGDI----EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEAL 252
             P+ +++N +I+G +Q GD     E   ++++    P+  SW S+++G+V   R  EA 
Sbjct: 227 LKPNVVTWNSLISGFSQKGDQGRVSEIFRLMIADGVEPDVVSWTSVISGFVQNFRNKEAF 286

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
             F +M S        T S +L   A  + ++ G  IH   +  G++  I V SAL+DMY
Sbjct: 287 DTFKQMLSHGFHPTSATISALLPACATAARVSVGREIHGYALVTGVEGDIYVRSALVDMY 346

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
           +KCG +  A ++F  +  KN VTWN++I G+A +G   + IELF Q++     + D +TF
Sbjct: 347 AKCGFISEARNLFSRMPEKNTVTWNSIIFGFANHGYCEEAIELFNQMEKEGVAKLDHLTF 406

Query: 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
              L ACSH    F+     F+ M + Y I+P +EH   M+ L+G+ G++  A  MI+ +
Sbjct: 407 TAALTACSHVG-DFELGQRLFKIMQEKYSIEPRLEHYACMVDLLGRAGKLHEAYCMIKTM 465

Query: 433 GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVAS 492
                  VW ALL+A      +++A ++A  +++LE +S    ++L ++Y   G W    
Sbjct: 466 PIEPDLFVWGALLAACRNHRHVELAEVAAMHLMELEPESAANPLLLSSVYADAGKWGKFE 525

Query: 493 VMRNFMRERGLRKEAGCSWIE 513
            ++  +++  LRK  G SWIE
Sbjct: 526 RVKKRIKKGKLRKLQGLSWIE 546



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 108/193 (55%), Gaps = 5/193 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +  LL A +     +  +++H Y L +G   +++V +AL+  Y K   +++A  +
Sbjct: 299 PTSATISALLPACATAARVSVGREIHGYALVTGVEGDIYVRSALVDMYAKCGFISEARNL 358

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA-DAYSFTSALAACGQLGS 119
           F  +P+ + V+WNS+I G+   G   +A+ LF ++E+  +   D  +FT+AL AC  +G 
Sbjct: 359 FSRMPEKNTVTWNSIIFGFANHGYCEEAIELFNQMEKEGVAKLDHLTFTAALTACSHVGD 418

Query: 120 LQLGMAIHSKIV--KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSV 176
            +LG  +  KI+  KYS+E  +    C++D+ G+ G + +A  +   M I+ D+  W ++
Sbjct: 419 FELGQRLF-KIMQEKYSIEPRLEHYACMVDLLGRAGKLHEAYCMIKTMPIEPDLFVWGAL 477

Query: 177 IAASARNGNLELA 189
           +AA   + ++ELA
Sbjct: 478 LAACRNHRHVELA 490



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 178/381 (46%), Gaps = 15/381 (3%)

Query: 1   PNE-YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           PN  +V+  +L+A   +G     +++H +ILK  F  + FVS++L+  Y K   + DA K
Sbjct: 127 PNYVFVIPSVLKACGHVGDRITGEKIHGFILKCSFELDSFVSSSLIVMYSKCAKVEDARK 186

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  +     V+ N++++GYVQ G   +AL L   ++   +  +  ++ S ++   Q G 
Sbjct: 187 VFDGMTVKDTVALNAVVAGYVQQGAANEALGLVESMKLMGLKPNVVTWNSLISGFSQKGD 246

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
                 I   ++   +E  VV    +I  + +    ++A   F +M+       ++ I+A
Sbjct: 247 QGRVSEIFRLMIADGVEPDVVSWTSVISGFVQNFRNKEAFDTFKQMLSHGFHPTSATISA 306

Query: 180 -------SARNGNLELAFGF-LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
                  +AR        G+ L      D    + +++  A+ G I +A  + S MP  N
Sbjct: 307 LLPACATAARVSVGREIHGYALVTGVEGDIYVRSALVDMYAKCGFISEARNLFSRMPEKN 366

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDV-PMDEYTFSTMLSGIAGLSALTWGMLIH 290
           + +WNSI+ G+ N     EA+ LF +M+ + V  +D  TF+  L+  + +     G  + 
Sbjct: 367 TVTWNSIIFGFANHGYCEEAIELFNQMEKEGVAKLDHLTFTAALTACSHVGDFELGQRLF 426

Query: 291 SCVI-KQGLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGD 348
             +  K  ++  +   + ++D+  + G++  A  M +++    +L  W A++    RN  
Sbjct: 427 KIMQEKYSIEPRLEHYACMVDLLGRAGKLHEAYCMIKTMPIEPDLFVWGALLAA-CRNHR 485

Query: 349 LTKVIELFEQLKTVRDLQPDS 369
             ++ E+      + +L+P+S
Sbjct: 486 HVELAEV--AAMHLMELEPES 504



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 119/276 (43%), Gaps = 19/276 (6%)

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           +L  G  +H+ +V     R  V+A+ L+  Y  CG +  A  +F ++   ++  W ++I 
Sbjct: 42  ALHAGKKLHAHLVTNGFARFNVVASNLVSFYTCCGQLSHARKLFDKIPTTNVRRWIALIG 101

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVI---NGIAQFGDIEDAI-------MILSSMP 228
           + AR G  + A      +     ++ N V    + +   G + D I        IL    
Sbjct: 102 SCARCGFYDHALAVFSEMQAVQGLTPNYVFVIPSVLKACGHVGDRITGEKIHGFILKCSF 161

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             +S   +S++  Y    +V +A  +F  M  KD        + +++G     A    + 
Sbjct: 162 ELDSFVSSSLIVMYSKCAKVEDARKVFDGMTVKDT----VALNAVVAGYVQQGAANEALG 217

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL----CRKNLVTWNAMITGYA 344
           +   +   GL  ++V  ++L+  +S+ G       +FR +       ++V+W ++I+G+ 
Sbjct: 218 LVESMKLMGLKPNVVTWNSLISGFSQKGDQGRVSEIFRLMIADGVEPDVVSWTSVISGFV 277

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +N    +  + F+Q+ +     P S T   +L AC+
Sbjct: 278 QNFRNKEAFDTFKQMLS-HGFHPTSATISALLPACA 312



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 1/114 (0%)

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           +++ ++   A   AL  G  +H+ ++  G     VVAS L+  Y+ CGQ+  A  +F  +
Sbjct: 29  SYAELIDMYARDRALHAGKKLHAHLVTNGFARFNVVASNLVSFYTCCGQLSHARKLFDKI 88

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL-NVLAACSH 381
              N+  W A+I   AR G     + +F +++ V+ L P+ V  + +VL AC H
Sbjct: 89  PTTNVRRWIALIGSCARCGFYDHALAVFSEMQAVQGLTPNYVFVIPSVLKACGH 142


>gi|356532922|ref|XP_003535018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Glycine max]
          Length = 611

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 168/536 (31%), Positives = 279/536 (52%), Gaps = 48/536 (8%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINS-LADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            LH ++LKSGFL++ FV+ +L+  Y K++   + A  +F  +P   V++W S+ISG+VQ 
Sbjct: 74  HLHAHVLKSGFLADRFVANSLLSLYSKLSPHFSQARALFDALPFKDVIAWTSIISGHVQK 133

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKI-VKYSLERGVVI 141
            + + A++LF+++    I  +A++ +S L AC QL +L LG  +H+ + ++       V+
Sbjct: 134 AQPKTAVHLFLQMLGQAIEPNAFTLSSILKACSQLENLHLGKTLHAVVFIRGFHSNNNVV 193

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP-- 199
           A  LIDMYG+   V+DA  VF E+ + D + W +VI+  ARN     A      + +   
Sbjct: 194 ACALIDMYGRSRVVDDARKVFDELPEPDYVCWTAVISTLARNDRFREAVRVFFAMHDGGL 253

Query: 200 ----DTISYNEVINGIAQF-----------------------------------GDIEDA 220
               D  ++  ++N                                        G++  A
Sbjct: 254 GLEVDGFTFGTLLNACGNLGWLRMGREVHGKVVTLGMKGNVFVESSLLDMYGKCGEVGCA 313

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
            ++   +   N  +  ++L  Y +       L L  E +S    +D Y+F T++   +GL
Sbjct: 314 RVVFDGLEEKNEVALTAMLGVYCHNGECGSVLGLVREWRSM---VDVYSFGTIIRACSGL 370

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           +A+  G  +H   +++G    +VV SAL+D+Y+KCG V+ A  +F  +  +NL+TWNAMI
Sbjct: 371 AAVRQGNEVHCQYVRRGGWRDVVVESALVDLYAKCGSVDFAYRLFSRMEARNLITWNAMI 430

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
            G+A+NG   + +ELFE++     ++PD ++F+NVL ACSH  +  D+   YF+ M ++Y
Sbjct: 431 GGFAQNGRGQEGVELFEEM-VKEGVRPDWISFVNVLFACSHNGL-VDQGRRYFDLMRREY 488

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
           GI+P V H   MI ++G+   +  A+ ++           W  LL A   CSD   A   
Sbjct: 489 GIRPGVVHYTCMIDILGRAELIEEAESLLESADCRYDHSRWAVLLGACTKCSDYVTAERI 548

Query: 461 AAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           A ++I+LE D    YV+L N+Y + G W+ A  +R  M ERG++K  G SWIE E 
Sbjct: 549 AKKMIQLEPDFHLSYVLLGNIYRAVGKWNEALEIRKLMEERGVKKVPGKSWIESEK 604



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 189/410 (46%), Gaps = 46/410 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNV-FVSTALMGFYRKINSLADAHK 59
           PN + L  +L+A S L      + LH  +   GF SN   V+ AL+  Y +   + DA K
Sbjct: 153 PNAFTLSSILKACSQLENLHLGKTLHAVVFIRGFHSNNNVVACALIDMYGRSRVVDDARK 212

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEI--YADAYSFTSALAACGQL 117
           +F E+P+P  V W ++IS   ++ ++R+A+ +F  +    +    D ++F + L ACG L
Sbjct: 213 VFDELPEPDYVCWTAVISTLARNDRFREAVRVFFAMHDGGLGLEVDGFTFGTLLNACGNL 272

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK--------- 168
           G L++G  +H K+V   ++  V + + L+DMYGKCG V  A  VF  + +K         
Sbjct: 273 GWLRMGREVHGKVVTLGMKGNVFVESSLLDMYGKCGEVGCARVVFDGLEEKNEVALTAML 332

Query: 169 -----------------------DIISWNSVIA-----ASARNGNLELAFGFLHRLPNPD 200
                                  D+ S+ ++I      A+ R GN E+   ++ R    D
Sbjct: 333 GVYCHNGECGSVLGLVREWRSMVDVYSFGTIIRACSGLAAVRQGN-EVHCQYVRRGGWRD 391

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +  + +++  A+ G ++ A  + S M + N  +WN+++ G+    R  E + LF EM  
Sbjct: 392 VVVESALVDLYAKCGSVDFAYRLFSRMEARNLITWNAMIGGFAQNGRGQEGVELFEEMVK 451

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVE 319
           + V  D  +F  +L   +    +  G      + ++ G+   +V  + ++D+  +   +E
Sbjct: 452 EGVRPDWISFVNVLFACSHNGLVDQGRRYFDLMRREYGIRPGVVHYTCMIDILGRAELIE 511

Query: 320 IADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
            A+S+  S  CR +   W  ++    +  D      +    K +  L+PD
Sbjct: 512 EAESLLESADCRYDHSRWAVLLGACTKCSDYVTAERI---AKKMIQLEPD 558



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 108/225 (48%), Gaps = 7/225 (3%)

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           I +S   P+ +   S +  +     +P+AL L  + Q++   +    ++++L       +
Sbjct: 12  IFTSTVVPSRT--ESQILHHCKLGALPKALILL-KAQAQAQALKPVVYASLLQACRKAHS 68

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG-QVEIADSMFRSLCRKNLVTWNAMIT 341
              G  +H+ V+K G  A   VA++LL +YSK       A ++F +L  K+++ W ++I+
Sbjct: 69  FPLGTHLHAHVLKSGFLADRFVANSLLSLYSKLSPHFSQARALFDALPFKDVIAWTSIIS 128

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G+ +       + LF Q+   + ++P++ T  ++L ACS  +      + +     + + 
Sbjct: 129 GHVQKAQPKTAVHLFLQMLG-QAIEPNAFTLSSILKACSQLENLHLGKTLHAVVFIRGFH 187

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
               V   C++I + G+   V  A+++  EL    Y V W A++S
Sbjct: 188 SNNNVV-ACALIDMYGRSRVVDDARKVFDELPEPDY-VCWTAVIS 230


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 158/541 (29%), Positives = 289/541 (53%), Gaps = 51/541 (9%)

Query: 23  QQLHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           +++H +++ +G +   V +   L+  Y K  S+ADA ++F  + +   VSWNS+I+G  Q
Sbjct: 53  REVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQ 112

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           +G + +A+  +  + R EI   +++  S+L++C  L   +LG  IH + +K  ++  V +
Sbjct: 113 NGCFIEAVERYQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSV 172

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA-----------------RNG 184
           +N L+ +Y + G + +   +F  M + D +SWNS+I A A                 R G
Sbjct: 173 SNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAG 232

Query: 185 N--------------LELAFGFLHRLPNPDTISYN---------EVINGIAQFGDIEDAI 221
                            L+FG L +  +   + YN          +I    + G+++   
Sbjct: 233 QKLNRITFSSVLSAVSSLSFGELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCE 292

Query: 222 MILSSMPSPNSS-SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
            I S M       +WNS+++GY++   + +AL L   M      +D + ++T+LS  A +
Sbjct: 293 KIFSRMSERRDDVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASV 352

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           + L  GM +H+C ++  L++ +VV SAL+DMYSKCG+++ A   F ++  +N  +WN+MI
Sbjct: 353 ATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMI 412

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           +GYAR+G   + ++LF  +K      PD VTF+ VL+ACSH  +  ++  ++FESM+  Y
Sbjct: 413 SGYARHGQGEEALKLFANMKLDGQTPPDHVTFVGVLSACSHAGL-LEEGFKHFESMSDSY 471

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC-----SDLD 455
           G+ P +EH   M  L+G+ GE+ + +  I ++      ++WR +L   GAC        +
Sbjct: 472 GLAPRIEHFSCMADLLGRAGELDKLEDFIDKMPVKPNVLIWRTVL---GACCRANGRKAE 528

Query: 456 VARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           + + +A  + +LE ++   YV+L N+Y + G W+     R  M++  ++KEAG SW+ ++
Sbjct: 529 LGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMK 588

Query: 516 N 516
           +
Sbjct: 589 D 589



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 170/392 (43%), Gaps = 45/392 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  + L   L + + L W    QQ+H   LK G   NV VS ALM  Y +   L +  K+
Sbjct: 133 PGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKI 192

Query: 61  FVEIPQPSVVSWNSLISGYVQSGK-YRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F  +P+   VSWNS+I     S +   +A+  F+   R+    +  +F+S L+A   L  
Sbjct: 193 FSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSF 252

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIA 178
            +LG  IH   +KY++       N LI  YGKCG ++    +F  M + +D ++WNS+I+
Sbjct: 253 GELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMIS 312

Query: 179 ASARN----GNLELAFGFLHRLPNPDTISYNEVINGIA---------------------- 212
               N      L+L +  L      D+  Y  V++  A                      
Sbjct: 313 GYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLES 372

Query: 213 -------------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                        + G ++ A+   ++MP  NS SWNS+++GY    +  EAL LF  M+
Sbjct: 373 DVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANMK 432

Query: 260 -SKDVPMDEYTFSTMLSGIAGLSALTWGML-IHSCVIKQGLDASIVVASALLDMYSKCGQ 317
                P D  TF  +LS  +    L  G     S     GL   I   S + D+  + G+
Sbjct: 433 LDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGE 492

Query: 318 VE-IADSMFRSLCRKNLVTWNAMITGYAR-NG 347
           ++ + D + +   + N++ W  ++    R NG
Sbjct: 493 LDKLEDFIDKMPVKPNVLIWRTVLGACCRANG 524


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 158/536 (29%), Positives = 291/536 (54%), Gaps = 45/536 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++HC +LK GF  +V+++ + + FY +   ++ A  +F  +    + +WN++ISG+  +
Sbjct: 159 RKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLN 218

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           GK  +AL +F E+    +  D+ + +S L  C QL  +  G+ IH   +K  LE  + + 
Sbjct: 219 GKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVC 278

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
           N LI+MY K G +  A  +F +M  +DI+SWNS++AA  +N    +A G  +++ +    
Sbjct: 279 NALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVV 338

Query: 199 PDTISY------------------------------------NEVINGIAQFGDIEDAIM 222
           PD ++                                     N +I+  A+ G I+ A  
Sbjct: 339 PDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARK 398

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ--SKDVPMDEYTFSTMLSGIAGL 280
           +   +P  +  SWNS++TGY       EA+ ++  M+  S  VP ++ T+ ++L+  + L
Sbjct: 399 VFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVP-NQGTWVSILTAHSQL 457

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
            AL  GM  H  +IK  L   I V++ L+DMY KCG++  A S+F  +  ++ V+WNA+I
Sbjct: 458 GALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAII 517

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           + +  +G   K ++LF+++++   ++PD +TF+++L+ACSH+ +  D+    F+ M + Y
Sbjct: 518 SCHGLHGYGLKAVKLFKEMQS-EGVKPDHITFVSLLSACSHSGL-VDEGQWCFQLMQETY 575

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
           GI+P+++H   M+ L G+ G + +A   ++ +       VW ALL A     ++++ R  
Sbjct: 576 GIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTV 635

Query: 461 AAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +  ++K+E ++   YV+L N+Y   G+W+    +R+  R+RGL+K  G S IEV+ 
Sbjct: 636 SDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDK 691



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 213/468 (45%), Gaps = 47/468 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH  ++ SG   ++F+S  L+  Y  +  +  A   F +I    V +WNS+IS Y + 
Sbjct: 60  KQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARI 119

Query: 83  GKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           G +  A++ F E L  S + +D Y+F   + ACG L     G  +H  ++K   E  V I
Sbjct: 120 GHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVLKLGFECDVYI 176

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN--- 198
           A   I  Y + G V  A  +F  M+ +DI +WN++I+    NG +  A      +     
Sbjct: 177 AASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSV 236

Query: 199 -----------PDTISYNEVINGI-------------------------AQFGDIEDAIM 222
                      P  +  +++I+G+                         A+FG++  A  
Sbjct: 237 SMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAET 296

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           I + M   +  SWNS+L  +    +   AL ++ +M S  V  D  T  ++ S  A L  
Sbjct: 297 IFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGN 356

Query: 283 LTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
                 IH  V ++      I + +A++DMY+K G ++ A  +F  L  K++++WN++IT
Sbjct: 357 FLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLIT 416

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GY++NG   + I+++  ++      P+  T++++L A S        +  + + +     
Sbjct: 417 GYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLY 476

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
               V  C  ++ + G+ G++  A  +  E+   S  V W A++S  G
Sbjct: 477 FDIFVSTC--LVDMYGKCGKLADALSLFYEVPHQS-SVSWNAIISCHG 521



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 152/320 (47%), Gaps = 46/320 (14%)

Query: 93  VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC 152
           VE E+ EI      F      C ++    L   +H+ +V     + + ++  LI+ Y   
Sbjct: 37  VENEKREI-----DFNRIFLYCTKV---HLAKQLHALLVVSGKTQSIFLSAKLINRYAFL 88

Query: 153 GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE---------LAFGFL---HRLPNP- 199
           G +  A   F ++  KD+ +WNS+I+A AR G+           L+  FL   H    P 
Sbjct: 89  GDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPV 148

Query: 200 ------------------------DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSW 235
                                   D       I+  ++FG +  A  +  +M   +  +W
Sbjct: 149 IRACGNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTW 208

Query: 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
           N++++G+    +V EAL +F EM+ K V MD  T S++L     L  +  G+LIH   IK
Sbjct: 209 NAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIK 268

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
            GL+  + V +AL++MY+K G++  A+++F  +  +++V+WN+++  + +N      + +
Sbjct: 269 LGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGV 328

Query: 356 FEQLKTVRDLQPDSVTFLNV 375
           + ++ ++  + PD +T +++
Sbjct: 329 YNKMHSI-GVVPDLLTLVSL 347



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 2/190 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+     +L A S LG      + H  ++K+    ++FVST L+  Y K   LADA  +
Sbjct: 442 PNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSL 501

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P  S VSWN++IS +   G   KA+ LF E++   +  D  +F S L+AC   G +
Sbjct: 502 FYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLV 561

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G      + + Y +   +    C++D++G+ G +E A      M +  D+  W +++ 
Sbjct: 562 DEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLG 621

Query: 179 ASARNGNLEL 188
           A   + N+EL
Sbjct: 622 ACRIHENVEL 631


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 167/558 (29%), Positives = 284/558 (50%), Gaps = 43/558 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + L  +  A+S L      +Q H   +K+    +VF +++L+  Y K   + +A  +
Sbjct: 114 PNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDL 173

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEI--YADAYSFTSALAACGQLG 118
           F E+P+ + VSW ++ISGY       +A  LF  +   E     + + FTS L+A     
Sbjct: 174 FDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYM 233

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            +  G  +HS  +K  L   V +AN L+ MY KCGS+EDA+  F    +K+ I+W++++ 
Sbjct: 234 LVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVT 293

Query: 179 ASARNGNLELAFGFLHRLPN----PDTISYNEVINGI----------------------- 211
             A+ G+ + A    + +      P   +   VIN                         
Sbjct: 294 GFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGYEL 353

Query: 212 ------------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                       A+ G I DA      +  P+   W SI+TGYV       AL+L+G+MQ
Sbjct: 354 QLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQ 413

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
              V  ++ T +++L   + L+AL  G  +H+ +IK      I + SAL  MY+KCG ++
Sbjct: 414 LGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCGSLD 473

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
               +F  +  +++++WNAMI+G ++NG   + +ELFE++  +   +PD+VTF+N+L+AC
Sbjct: 474 DGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKM-CLEGTKPDNVTFVNLLSAC 532

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH  +  D+   YF+ M  ++ I PTVEH   M+ ++ + G++  A+  I          
Sbjct: 533 SHMGL-VDRGWVYFKMMFDEFNIAPTVEHYACMVDILSRAGKLHEAKEFIESATVDHGLC 591

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +WR LL+AS    D D+   +  ++++L       YV+L ++YT+ G W+    +R  M+
Sbjct: 592 LWRILLAASKNHRDYDLGAYAGEKLMELGSLESSAYVLLSSIYTALGKWEDVERVRGMMK 651

Query: 500 ERGLRKEAGCSWIEVENV 517
            RG+ KE GCSWIE++++
Sbjct: 652 ARGVTKEPGCSWIELKSL 669



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 192/404 (47%), Gaps = 49/404 (12%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           LH  IL +G  S+  ++ +L+  Y K +  + A+ +F  I    VVSWN LI+ + Q   
Sbjct: 32  LHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINNKDVVSWNCLINAFSQQQA 91

Query: 85  YRKALN---LFVEL--ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
           +  +L+   LF +L      I  +A++ T    A   L   + G   H+  VK +    V
Sbjct: 92  HAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACSHDV 151

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL--- 196
             A+ L++MY K G V +A  +F EM +++ +SW ++I+  A     + AF     +   
Sbjct: 152 FAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHE 211

Query: 197 ---PNPDTISYNEVINGIAQF-----------------------------------GDIE 218
               N +   +  V++ +  +                                   G +E
Sbjct: 212 EKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLE 271

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGI 277
           DA+       + NS +W++++TG+       +AL LF +M QS ++P  E+T   +++  
Sbjct: 272 DALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELP-SEFTLVGVINAC 330

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
           +   A+  G  +H   +K G +  + V SAL+DMY+KCG +  A   F  + + ++V W 
Sbjct: 331 SDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWT 390

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           ++ITGY +NGD    + L+ +++ +  + P+ +T  +VL ACS+
Sbjct: 391 SIITGYVQNGDYEGALNLYGKMQ-LGGVIPNDLTMASVLKACSN 433



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 148/317 (46%), Gaps = 47/317 (14%)

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
           AL  C +   L+ G A+H++I+         IAN LI++Y KC     A  VF  + +KD
Sbjct: 16  ALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINNKD 75

Query: 170 IISWNSVIAASARNGNLELAFGFLHR-----------LPNPDTIS--------------- 203
           ++SWN +I A ++      +   +H            +PN  T++               
Sbjct: 76  VVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSRAG 135

Query: 204 ------------------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245
                              + ++N   + G + +A  +   MP  N+ SW ++++GY ++
Sbjct: 136 RQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQ 195

Query: 246 NRVPEALHLFGEM--QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV 303
               EA  LF  M  + K    +E+ F+++LS +     +  G  +HS  +K GL   + 
Sbjct: 196 ELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVS 255

Query: 304 VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363
           VA+AL+ MY KCG +E A   F     KN +TW+AM+TG+A+ GD  K ++LF  +    
Sbjct: 256 VANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSG 315

Query: 364 DLQPDSVTFLNVLAACS 380
           +L P   T + V+ ACS
Sbjct: 316 EL-PSEFTLVGVINACS 331



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 9/259 (3%)

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN-RVP--EALHLFGE--MQ 259
           N +IN  A+      A ++  S+ + +  SWN ++  +  +    P    +HLF +  M 
Sbjct: 49  NSLINLYAKCSHFSKANLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMA 108

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            K +  + +T + + +  + LS    G   H+  +K      +  AS+LL+MY K G V 
Sbjct: 109 HKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVF 168

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK-TVRDLQPDSVTFLNVLAA 378
            A  +F  +  +N V+W  MI+GYA      +  ELF+ ++   +    +   F +VL+A
Sbjct: 169 EARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSA 228

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
              T            S+    G+   V    +++ +  + G +  A +   EL      
Sbjct: 229 L--TCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTF-ELSGNKNS 285

Query: 439 VVWRALLSASGACSDLDVA 457
           + W A+++      D D A
Sbjct: 286 ITWSAMVTGFAQFGDSDKA 304


>gi|15240572|ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g55740, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 21; Flags: Precursor
 gi|9758608|dbj|BAB09241.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332009292|gb|AED96675.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 830

 Score =  267 bits (683), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 158/524 (30%), Positives = 284/524 (54%), Gaps = 13/524 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +   L AS+++G     +Q H   + +G   +  + T+L+ FY K+  +  A  +
Sbjct: 272 PTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMV 331

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  VV+WN +ISGYVQ G    A+ +   +   ++  D  +  + ++A  +  +L
Sbjct: 332 FDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENL 391

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +    +++S E  +V+A+ ++DMY KCGS+ DA  VF   ++KD+I WN+++AA 
Sbjct: 392 KLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAY 451

Query: 181 ARNG----NLELAFGF-LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PN 231
           A +G     L L +G  L  +P P+ I++N +I  + + G +++A  +   M S    PN
Sbjct: 452 AESGLSGEALRLFYGMQLEGVP-PNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPN 510

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SW +++ G V      EA+    +MQ   +  + ++ +  LS  A L++L  G  IH 
Sbjct: 511 LISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHG 570

Query: 292 CVIKQGLDASIV-VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
            +I+    +S+V + ++L+DMY+KCG +  A+ +F S     L   NAMI+ YA  G+L 
Sbjct: 571 YIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLK 630

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + I L+  L+ V  L+PD++T  NVL+AC+H     ++  E F  +     +KP +EH  
Sbjct: 631 EAIALYRSLEGV-GLKPDNITITNVLSACNHAG-DINQAIEIFTDIVSKRSMKPCLEHYG 688

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            M+ L+   GE  +A R+I E+ F     + ++L+++       ++    + ++++ E +
Sbjct: 689 LMVDLLASAGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPE 748

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           +   YV + N Y   G+WD    MR  M+ +GL+K+ GCSWI++
Sbjct: 749 NSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQI 792



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 139/515 (26%), Positives = 242/515 (46%), Gaps = 49/515 (9%)

Query: 23  QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H  ILK+G  +  N ++ T L+ FY K ++L  A  +F ++   +V SW ++I    
Sbjct: 90  KQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKC 149

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + G    AL  FVE+  +EI+ D +   +   ACG L   + G  +H  +VK  LE  V 
Sbjct: 150 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVF 209

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
           +A+ L DMYGKCG ++DA  VF E+ D++ ++WN+++    +NG  E A      +    
Sbjct: 210 VASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQG 269

Query: 197 --PNPDTISYN-------------------EVINGI--------------AQFGDIEDAI 221
             P   T+S                      ++NG+               + G IE A 
Sbjct: 270 VEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAE 329

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           M+   M   +  +WN I++GYV +  V +A+++   M+ + +  D  T +T++S  A   
Sbjct: 330 MVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTE 389

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  +    I+   ++ IV+AS ++DMY+KCG +  A  +F S   K+L+ WN ++ 
Sbjct: 390 NLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLA 449

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            YA +G   + + LF  ++ +  + P+ +T+ N++      +   D+  + F  M +  G
Sbjct: 450 AYAESGLSGEALRLFYGMQ-LEGVPPNVITW-NLIILSLLRNGQVDEAKDMFLQM-QSSG 506

Query: 402 IKPTVEHCCSMIRLMGQKG---EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           I P +    +M+  M Q G   E     R ++E G           LSA    + L + R
Sbjct: 507 IIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGR 566

Query: 459 ISAAEVIKLEGDSDYVYV--MLCNLYTSHGNWDVA 491
                +I+    S  V +   L ++Y   G+ + A
Sbjct: 567 TIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKA 601



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/425 (25%), Positives = 192/425 (45%), Gaps = 81/425 (19%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +V+ ++ +A   L W  + + +H Y++KSG    VFV+++L   Y K   L DA K+
Sbjct: 171 PDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKV 230

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EIP  + V+WN+L+ GYVQ+GK  +A+ LF ++ +  +     + ++ L+A   +G +
Sbjct: 231 FDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGV 290

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI--- 177
           + G   H+  +   +E   ++   L++ Y K G +E A  VF  M +KD+++WN +I   
Sbjct: 291 EEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGY 350

Query: 178 --------------------------------AASARNGNLELA-----FGFLHRLPNPD 200
                                           +A+AR  NL+L      +   H   + D
Sbjct: 351 VQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFES-D 409

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +  + V++  A+ G I DA  +  S    +   WN++L  Y       EAL LF  MQ 
Sbjct: 410 IVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQL 469

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           + VP +                +TW ++I S +                    + GQV+ 
Sbjct: 470 EGVPPN---------------VITWNLIILSLL--------------------RNGQVDE 494

Query: 321 ADSMFRSLCR----KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           A  MF  +       NL++W  M+ G  +NG   + I    +++    L+P++ +    L
Sbjct: 495 AKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQE-SGLRPNAFSITVAL 553

Query: 377 AACSH 381
           +AC+H
Sbjct: 554 SACAH 558



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 99/227 (43%), Gaps = 22/227 (9%)

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
           SP+S+S+   ++       + EAL L  EM  +++ +    +  +L G      L+ G  
Sbjct: 32  SPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQ 91

Query: 289 IHSCVIKQG--LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR- 345
           IH+ ++K G     +  + + L+  Y+KC  +EIA+ +F  L  +N+ +W A+I    R 
Sbjct: 92  IHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRI 151

Query: 346 ---NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
               G L   +E+ E      ++ PD+    NV  AC             F      Y +
Sbjct: 152 GLCEGALMGFVEMLEN-----EIFPDNFVVPNVCKACGALKW------SRFGRGVHGYVV 200

Query: 403 KPTVEHCC----SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
           K  +E C     S+  + G+ G +  A ++  E+      V W AL+
Sbjct: 201 KSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIP-DRNAVAWNALM 246


>gi|347954472|gb|AEP33736.1| chlororespiratory reduction 21, partial [Raphanus sativus]
          Length = 806

 Score =  267 bits (683), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 154/525 (29%), Positives = 285/525 (54%), Gaps = 13/525 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +   L AS+++      +Q H   + +G   +  + T+++ FY K+  +  A  +
Sbjct: 247 PTRVTVSTCLSASANMCGVGEGKQSHAVAVVNGLEMDNILGTSVLNFYCKVGLIEYAEMV 306

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VV+WN LISGYVQ G    A+ +   +   ++  D  + ++ ++A  +  + 
Sbjct: 307 FDRMIGKDVVTWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSAAARTQNS 366

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +    +++S E  + +A+ +IDMY KCGS+ DA  VF   + KD+I WN+++AA 
Sbjct: 367 KLGKEVQCYCIRHSFESDIGLASTVIDMYAKCGSIVDAKRVFDSTVQKDLILWNTLLAAY 426

Query: 181 ARNG----NLELAFGF-LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PN 231
           A +G     L L +   L  +P P+ I++N +I  + + G +++A  +   M S    P 
Sbjct: 427 AESGLSGEALRLFYEMQLESVP-PNAITWNLIILSLFRNGQVDEAKEMFLQMQSSGIVPT 485

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SW +++ G V      EA+H   +MQ   +  + ++ +  LS  A L++L  G  +H 
Sbjct: 486 LVSWTTMMNGLVQNGCSEEAVHYLRKMQESGLRPNVFSITVALSACANLASLHLGRSVHG 545

Query: 292 CVIKQGLDASIV-VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
            +I+  L +S V + +AL+DMY+KCG +  A+ +F+      L  +NAMI+ YA +G++ 
Sbjct: 546 YIIRNQLHSSSVSIETALIDMYAKCGDISKAEKVFKRKSYSELPLFNAMISAYALSGNVK 605

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + I+L+  L+ +  ++PD++TF NVL+AC+H     ++  E F  M   +G++P +EH  
Sbjct: 606 EAIDLYRSLEDM-GIKPDNITFTNVLSACNHAG-DINQAIEIFSDMVSKHGMEPCLEHYG 663

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            M+ L+   GE  +A R++ E+ +     + ++LL         ++    + ++++ E D
Sbjct: 664 LMVDLLASAGETEKALRLMEEMPYKPDARMIQSLLVTCNEEHKTELVDYLSRQLLESEPD 723

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           +   YV + N Y   G+WD    MR  M+++GL+K+ GCSWI+++
Sbjct: 724 NSGNYVTISNAYAGEGSWDEVVKMREMMKDKGLKKKPGCSWIQIK 768



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 137/525 (26%), Positives = 243/525 (46%), Gaps = 52/525 (9%)

Query: 23  QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H  ILK+G  +  N ++ T L+ FY K ++   A  +F ++   +V SW ++I    
Sbjct: 64  RQIHARILKNGEFYAKNEYIETKLVIFYAKCDAHEIAETLFSKLRVRNVFSWAAIIGVKC 123

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + G    AL  FVE+ + EI+ D +   +   ACG L     G  IH  + K  L    V
Sbjct: 124 RVGLAEGALMGFVEMLKDEIFPDNFVVPNVCKACGALQWSGFGRGIHGYVAKSGLYGDCV 183

Query: 141 -IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL--- 196
            +A+ L DMYGKCG ++DA  VF E+ ++++++WN+++    +NG  E A   +  +   
Sbjct: 184 FVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREE 243

Query: 197 ---PNPDTISY---------------------------------NEVINGIAQFGDIEDA 220
              P   T+S                                    V+N   + G IE A
Sbjct: 244 GVEPTRVTVSTCLSASANMCGVGEGKQSHAVAVVNGLEMDNILGTSVLNFYCKVGLIEYA 303

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
            M+   M   +  +WN +++GYV +  V +A+ +   M+ + +  D  T ST++S  A  
Sbjct: 304 EMVFDRMIGKDVVTWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSAAART 363

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
                G  +    I+   ++ I +AS ++DMY+KCG +  A  +F S  +K+L+ WN ++
Sbjct: 364 QNSKLGKEVQCYCIRHSFESDIGLASTVIDMYAKCGSIVDAKRVFDSTVQKDLILWNTLL 423

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
             YA +G   + + LF +++ +  + P+++T+ N++      +   D+  E F  M +  
Sbjct: 424 AAYAESGLSGEALRLFYEMQ-LESVPPNAITW-NLIILSLFRNGQVDEAKEMFLQM-QSS 480

Query: 401 GIKPTVEHCCSMIRLMGQKG---EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
           GI PT+    +M+  + Q G   E     R ++E G           LSA    + L + 
Sbjct: 481 GIVPTLVSWTTMMNGLVQNGCSEEAVHYLRKMQESGLRPNVFSITVALSACANLASLHLG 540

Query: 458 RISAAEVIK--LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           R     +I+  L   S  +   L ++Y   G  D++   + F R+
Sbjct: 541 RSVHGYIIRNQLHSSSVSIETALIDMYAKCG--DISKAEKVFKRK 583



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 11/139 (7%)

Query: 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG--LDASIVV 304
            + EAL L  EM  ++V +    +  +L G         G  IH+ ++K G     +  +
Sbjct: 24  EIREALSLVTEMDFRNVRIGPEIYGEILQGCVYERDFHTGRQIHARILKNGEFYAKNEYI 83

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR----NGDLTKVIELFEQLK 360
            + L+  Y+KC   EIA+++F  L  +N+ +W A+I    R     G L   +E+ +   
Sbjct: 84  ETKLVIFYAKCDAHEIAETLFSKLRVRNVFSWAAIIGVKCRVGLAEGALMGFVEMLKD-- 141

Query: 361 TVRDLQPDSVTFLNVLAAC 379
              ++ PD+    NV  AC
Sbjct: 142 ---EIFPDNFVVPNVCKAC 157


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  267 bits (683), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 154/497 (30%), Positives = 266/497 (53%), Gaps = 4/497 (0%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYR-KINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           +++H  ++ +G + + F++T  +  Y     ++  A  +FV I  P   SW ++I G+V+
Sbjct: 44  KKIHAQLIITGQIKDTFIATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGFVE 103

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           +    KAL  +  + +  +  + ++F   L A G   S Q G  +H K+VK      V  
Sbjct: 104 AKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFT 163

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
            N LI MY KCGS+ DA  +F EM + ++++WN++I      G+ E A      +P  + 
Sbjct: 164 RNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMPERNV 223

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
            S+N V+ G ++ G ++ A  +   MP  +  SW S+++ YV   R  EAL LF EM   
Sbjct: 224 GSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLA 283

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  D    +++LS  A + AL  G  IH+ + +  L   + + +AL+DMY+KCG ++ A
Sbjct: 284 GVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTA 343

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F ++ RKNL +WNAM++G A +G     +ELF+Q+++   + P+ +TF+ VL+ACSH
Sbjct: 344 FGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMEST-GVGPNDITFVAVLSACSH 402

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
                ++  + F  M K++ I P VEH   M+ ++ ++G +  A+ MIR +      V+W
Sbjct: 403 IG-SVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLEPNVVIW 461

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL+A       +V       + KL  +    YV+L N++ +   W+     R  M++ 
Sbjct: 462 GALLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQM 521

Query: 502 GLRKE-AGCSWIEVENV 517
           G+ K+  G S IE+++V
Sbjct: 522 GVEKKIPGYSSIELDSV 538



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 130/258 (50%), Gaps = 14/258 (5%)

Query: 5   VLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEI 64
           ++  +L A + +G     + +H Y+ +S   ++VF+ TAL+  Y K   +  A  +F  +
Sbjct: 291 IITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVFNTM 350

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
           P+ ++ SWN+++SG    G    AL LF ++E + +  +  +F + L+AC  +GS++ G 
Sbjct: 351 PRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVLSACSHIGSVEEGW 410

Query: 125 AIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASAR 182
              +++ K +++   V    C++D+  + G + +A  +   M ++ +++ W +++ A   
Sbjct: 411 KKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLEPNVVIWGALLNACKV 470

Query: 183 NGNL---ELAFGFLHRLPNPDTISY---NEVINGIAQFGDIEDAIMILSSM------PSP 230
           +G     E   G++ +L + D   Y   + +    +Q+ ++E    ++  M      P  
Sbjct: 471 HGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQMGVEKKIPGY 530

Query: 231 NSSSWNSILTGYVNRNRV 248
           +S   +S++  +   +R+
Sbjct: 531 SSIELDSVVHDFFAEDRL 548


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 151/509 (29%), Positives = 258/509 (50%), Gaps = 34/509 (6%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFL-SNVFVSTALMGFYRKINSLADAHKMFVEIPQP 67
           LL+A S L       ++H    K GF  ++ F+ +AL+  Y     + DA  +F ++   
Sbjct: 121 LLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHR 180

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
            VV+WN +I GY Q+  Y   L L+ E++ S    DA    + L+AC   G+L  G AIH
Sbjct: 181 DVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIH 240

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
             I       G  I   L++MY  CG++  A  V+ +                       
Sbjct: 241 QFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQ----------------------- 277

Query: 188 LAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
                   LP+   +    +++G A+ G ++DA  I   M   +   W+++++GY    +
Sbjct: 278 --------LPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQ 329

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307
             EAL LF EMQ + +  D+ T  +++S  A + AL     IH+   K G   ++ + +A
Sbjct: 330 PLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNA 389

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           L+DMY+KCG +  A  +F ++ RKN+++W++MI  +A +GD    I LF ++K  ++++P
Sbjct: 390 LIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKE-QNIEP 448

Query: 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQR 427
           + VTF+ VL ACSH  +  ++  ++F SM  ++ I P  EH   M+ L  +   + +A  
Sbjct: 449 NGVTFIGVLYACSHAGL-VEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAME 507

Query: 428 MIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGN 487
           +I  + F    ++W +L+SA     ++++   +A  +++LE D D   V+L N+Y     
Sbjct: 508 LIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKR 567

Query: 488 WDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           WD   ++R  M+ +G+ KE  CS IEV N
Sbjct: 568 WDDVGLVRKLMKHKGVSKEKACSRIEVNN 596



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 97/191 (50%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  +  ++ A +++G     + +H Y  K+GF   + ++ AL+  Y K  +L  A ++
Sbjct: 347 PDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREV 406

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+ +V+SW+S+I+ +   G    A+ LF  ++   I  +  +F   L AC   G +
Sbjct: 407 FENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLV 466

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G    S ++ ++ +        C++D+Y +   +  A+ +   M    ++I W S+++
Sbjct: 467 EEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMS 526

Query: 179 ASARNGNLELA 189
           A   +G +EL 
Sbjct: 527 ACQNHGEIELG 537


>gi|255559020|ref|XP_002520533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540375|gb|EEF41946.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 547

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 159/500 (31%), Positives = 265/500 (53%), Gaps = 10/500 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + LH  ++ SG  S+   ++ L+ FY +   L+   K+F  IP+P+      LI  Y + 
Sbjct: 49  KHLHARLIVSGLASSNNFASKLISFYTETRQLSIVRKLFDRIPKPNFYQRTVLIGAYSRH 108

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G Y+  L++F E++   +  + +   S L ACG +  LQ G  +HS I+++  E  VV+ 
Sbjct: 109 GFYQDVLDVFSEMQNERLRPNKFVIPSVLRACGHVFDLQTGKILHSVILRHLFESDVVVN 168

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
             LIDMY +C  VE A  VF  M +KD+++ N+++   A+NG  +  F  + ++      
Sbjct: 169 TALIDMYSRCRHVEKARKVFDGMQEKDLVALNAMVLGYAQNGFAKEGFLLVEQMQMLDIK 228

Query: 199 PDTISYNEVINGIAQFGD--IEDAIMILSSMP--SPNSSSWNSILTGYVNRNRVPEALHL 254
           P+ +++N +I+G AQ GD  +   +  L SM    P+  SW S+++ +V  +    A   
Sbjct: 229 PNLVTWNTLISGFAQAGDKVMVQELFGLMSMHGFEPDVISWTSVISRFVQNSHNEAAFAA 288

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F +M       +  T S++L   A L+ +  G  +H      G++  I V SA++DMYSK
Sbjct: 289 FKQMLQHGAYPNSATISSLLPACASLANVRHGRELHGYAFAIGVEEDIYVRSAIVDMYSK 348

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG +  A  +F  +  ++ VTWN+MI GYA +G   + IELF Q++     + D ++F  
Sbjct: 349 CGLISEARMLFSKMPERHTVTWNSMIFGYANHGYCDEAIELFNQMEKTEAKKIDHLSFTA 408

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           VL ACSH  +  +     F  M + Y I P +EH   MI L+G+ G++  A  MI+ +  
Sbjct: 409 VLTACSHGRL-VELGQSLFLLMHEKYKIVPRLEHYACMIDLLGRAGKLSEAYDMIKTMPV 467

Query: 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494
                VW ALL A     ++D+A I+A  + +LE  +    ++L NLY   G+W+  + +
Sbjct: 468 EPDLFVWGALLGACRQHGEIDLAEIAARHLAELEPRNAGNNMLLSNLYADAGSWENVAKL 527

Query: 495 RNFMRERGLRKEAGCSWIEV 514
           +   R+R LRK +  SWI++
Sbjct: 528 KMGKRKR-LRKFSAYSWIQL 546



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 104/192 (54%), Gaps = 3/192 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  LL A + L    + ++LH Y    G   +++V +A++  Y K   +++A  +
Sbjct: 299 PNSATISSLLPACASLANVRHGRELHGYAFAIGVEEDIYVRSAIVDMYSKCGLISEARML 358

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA-DAYSFTSALAACGQLGS 119
           F ++P+   V+WNS+I GY   G   +A+ LF ++E++E    D  SFT+ L AC     
Sbjct: 359 FSKMPERHTVTWNSMIFGYANHGYCDEAIELFNQMEKTEAKKIDHLSFTAVLTACSHGRL 418

Query: 120 LQLGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
           ++LG ++   +  KY +   +    C+ID+ G+ G + +A  +   M ++ D+  W +++
Sbjct: 419 VELGQSLFLLMHEKYKIVPRLEHYACMIDLLGRAGKLSEAYDMIKTMPVEPDLFVWGALL 478

Query: 178 AASARNGNLELA 189
            A  ++G ++LA
Sbjct: 479 GACRQHGEIDLA 490



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
           +TF  ++       AL  G  +H+ +I  GL +S   AS L+  Y++  Q+ I   +F  
Sbjct: 30  HTFDELIKTYTRDHALNQGKHLHARLIVSGLASSNNFASKLISFYTETRQLSIVRKLFDR 89

Query: 328 LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           + + N      +I  Y+R+G    V+++F +++  R L+P+     +VL AC H 
Sbjct: 90  IPKPNFYQRTVLIGAYSRHGFYQDVLDVFSEMQNER-LRPNKFVIPSVLRACGHV 143


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 155/534 (29%), Positives = 280/534 (52%), Gaps = 42/534 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  +++ G+   V V+ + +  Y K  S+  A +MF ++ +  ++SWN++ISG  +S
Sbjct: 317 KQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARS 376

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQL-GSLQLGMAIHSKIVKYSLERGVVI 141
           G    +L LF++L RS +  D ++ TS L AC  L  S  +G  +H+  +K  +     +
Sbjct: 377 GLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFV 436

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA---FGFLH-RLP 197
           +  LID+Y K G +E+A  +F      D+ SWN+++     + N   A   F  +H R  
Sbjct: 437 STALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGE 496

Query: 198 NPDTISYNE-------------------------------VINGIAQF----GDIEDAIM 222
             D I++                                 VI+GI       G+++ A  
Sbjct: 497 KADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARK 556

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           + + +PSP+  +W ++++G V      +AL  + +M+   V  DEYTF+T++   + L+A
Sbjct: 557 VFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTA 616

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G  IH+ ++K        V ++L+DMY+KCG +E A  +FR +  +++  WNAMI G
Sbjct: 617 LEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVG 676

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
            A++G+  + +  F ++K+ R + PD VTF+ VL+ACSH+ +  D     F+SM K YG+
Sbjct: 677 LAQHGNAEEALNFFNEMKS-RGVTPDRVTFIGVLSACSHSGLTSDAYKN-FDSMQKTYGV 734

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
           +P +EH   ++  + + G +  A++++  + F +   ++R LL+A     D +     A 
Sbjct: 735 EPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAE 794

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           ++  ++      YV+L N+Y +   W+ A   RN M+   ++KE G SWI+++N
Sbjct: 795 KLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKN 848



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 198/420 (47%), Gaps = 49/420 (11%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSN-VFVSTALMG------FYRKINSL-ADAHKM 60
           +++A  ++G       L     +SG   + V V T LMG      F R++  + A A K+
Sbjct: 194 MMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKL 253

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           FV      V  WN  +S Y+Q+G+  +A++ F ++ +S +  D+ ++   L+    L  L
Sbjct: 254 FVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHL 313

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IH  +V++  ++ V +AN  I+MY K GSV  A  +FG+M + D+ISWN+VI+  
Sbjct: 314 ELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGC 373

Query: 181 ARNG----NLELAFGFLHRLPNPDTISYNEVINGIAQF---------------------- 214
           AR+G    +L L    L     PD  +   V+   +                        
Sbjct: 374 ARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLD 433

Query: 215 --------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                         G +E+A ++  +    + +SWN+++ G+   +   EAL LF  M  
Sbjct: 434 SFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHE 493

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +    D+ TF+        L  L  G  IH+ VIK      + V S +LDMY KCG+++ 
Sbjct: 494 RGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKS 553

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  +   + V W  +I+G   NG+  + +  + Q++ +  +QPD  TF  ++ ACS
Sbjct: 554 ARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMR-LAGVQPDEYTFATLVKACS 612



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 187/397 (47%), Gaps = 27/397 (6%)

Query: 7   FHLLR---ASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
           F +LR   A SDL      ++ H  I+ SG   + +V+  L+  Y K  SL  A K+F  
Sbjct: 17  FSILRHAIADSDL---ILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDI 73

Query: 64  IPQPS--VVSWNSLISGYVQSG------KYRKALNLFVELERSEIYADAYSFTSALAACG 115
            PQ    +V++N++++ Y  +G      K  +A ++F  L +S +    ++ +     C 
Sbjct: 74  TPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCL 133

Query: 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175
             GS     A+    VK  L+  V +A  L+++Y K   + +A  +F  M  +D++ WN 
Sbjct: 134 LYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNV 193

Query: 176 VIAASARNGNLELAFGF---LHRLP-NPDTISYNEVINGIAQFGDIEDAIMILSSMPSP- 230
           ++ A    G  +   G     HR    PD +S   ++ G+ +    E  +  + +  +  
Sbjct: 194 MMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKL 253

Query: 231 -------NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
                  + + WN  L+ Y+      EA+  F +M    VP D  T+  +LS +A L+ L
Sbjct: 254 FVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHL 313

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH  V++ G D  + VA++ ++MY K G V  A  MF  +   +L++WN +I+G 
Sbjct: 314 ELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGC 373

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           AR+G     + LF  L     L PD  T  +VL ACS
Sbjct: 374 ARSGLEECSLRLFIDLLR-SGLLPDQFTITSVLRACS 409



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 176/371 (47%), Gaps = 45/371 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYC--QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           P+++ +  +LRA S L  ++YC  +Q+H   LK+G + + FVSTAL+  Y K   + +A 
Sbjct: 396 PDQFTITSVLRACSSLE-ESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAE 454

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
            +F       + SWN+++ G+  S  YR+AL LF  +      AD  +F +A  A G L 
Sbjct: 455 LLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLV 514

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            LQ G  IH+ ++K      + + + ++DMY KCG ++ A  VF ++   D ++W +VI+
Sbjct: 515 RLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVIS 574

Query: 179 ASARNGNLELAFGFLHRLP----NPDTISY------------------------------ 204
               NG  E A    H++      PD  ++                              
Sbjct: 575 GCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAF 634

Query: 205 -----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                  +++  A+ G+IEDA  +   M + + + WN+++ G        EAL+ F EM+
Sbjct: 635 DPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMK 694

Query: 260 SKDVPMDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           S+ V  D  TF  +LS    +GL++  +     S     G++  I   S L+D  S+ G 
Sbjct: 695 SRGVTPDRVTFIGVLSACSHSGLTSDAYKNF-DSMQKTYGVEPEIEHYSCLVDALSRAGH 753

Query: 318 VEIADSMFRSL 328
           ++ A+ +  S+
Sbjct: 754 IQEAEKVVSSM 764



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 176/375 (46%), Gaps = 14/375 (3%)

Query: 17  GWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLI 76
           G  +  + L  Y +K G   +VFV+ AL+  Y K   + +A  +F  +P   VV WN ++
Sbjct: 136 GSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMM 195

Query: 77  SGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG----SLQLGMAIHSKIVK 132
             YV+ G   + L LF    RS +  D  S  + L   G+       L+   A  +K+  
Sbjct: 196 KAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFV 255

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK----DIISWNSVIAASARNGNLEL 188
              +  V + N  +  Y + G   +A+  F +MI      D +++  +++  A   +LEL
Sbjct: 256 CDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLEL 315

Query: 189 A---FGFLHRLPNPDTISY-NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
                G + R      +S  N  IN   + G +  A  +   M   +  SWN++++G   
Sbjct: 316 GKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCAR 375

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL-SALTWGMLIHSCVIKQGLDASIV 303
                 +L LF ++    +  D++T +++L   + L  +   G  +H+C +K G+     
Sbjct: 376 SGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSF 435

Query: 304 VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363
           V++AL+D+YSK G++E A+ +F +    +L +WNAM+ G+  + +  + + LF  L   R
Sbjct: 436 VSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLF-SLMHER 494

Query: 364 DLQPDSVTFLNVLAA 378
             + D +TF N   A
Sbjct: 495 GEKADQITFANAAKA 509


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 156/536 (29%), Positives = 276/536 (51%), Gaps = 45/536 (8%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKI--NSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           ++H +++K+  L    V+  L+     +   S+  A  +F +I +P   ++N +I G+  
Sbjct: 42  EIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTL 101

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
                +A+ LF E+  + +  D ++F   L  C +L +L  G  IH+ I+K        +
Sbjct: 102 KQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFV 161

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
            N LI MY  CG VE A  VF EM ++++ +WNS+ A   ++GN E      H +   D 
Sbjct: 162 KNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELD- 220

Query: 202 ISYNEV----------------------------------------INGIAQFGDIEDAI 221
           I ++EV                                        ++  A+ G ++ A 
Sbjct: 221 IRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTAR 280

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   M   +  +W+++++GY   +R  EAL LF EMQ  ++  +E T  ++LS  A L 
Sbjct: 281 RLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLG 340

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL  G  +H  + K+ +  ++ + +AL+D Y+KCG VE +  +F  +  KN+++W  +I 
Sbjct: 341 ALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQ 400

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G A NG   K +E F  L   ++++P+ VTF+ VL+ACSH  +  D+  + F SM++D+G
Sbjct: 401 GLASNGQGKKALEYF-YLMLEKNVEPNDVTFIGVLSACSHAGL-VDEGRDLFVSMSRDFG 458

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I+P +EH   M+ ++G+ G +  A + I+ +      V+WR LL++     ++++   S 
Sbjct: 459 IEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESL 518

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
            ++I LE      Y++L N+Y S G W+ A  +R  M+E+G++K  GCS IE++ V
Sbjct: 519 KQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGV 574



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/463 (24%), Positives = 209/463 (45%), Gaps = 57/463 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+    +L+  S L   +  +Q+H  I+K GF S+ FV   L+  Y     +  A ++
Sbjct: 122 PDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRV 181

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+ + +V +WNS+ +GY +SG + + + LF E+   +I  D  +  S L ACG+L  L
Sbjct: 182 FDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADL 241

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  I+  + +  L+    +   L+DMY KCG V+ A  +F +M  +D+++W+++I+  
Sbjct: 242 ELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGY 301

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGI------------------------- 211
           ++      A    H +     +P+ I+   +++                           
Sbjct: 302 SQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTV 361

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     A+ G +E +I +   MP  N  SW  ++ G  +  +  +AL  F  M  K
Sbjct: 362 TLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEK 421

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +V  ++ TF  +LS  +    +  G  L  S     G++  I     ++D+  + G +E 
Sbjct: 422 NVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEE 481

Query: 321 ADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQ-LKTVRDLQP----DSVTFLN 374
           A    +++  + N V W  ++     +  + K +E+ E+ LK +  L+P    D +   N
Sbjct: 482 AFQFIKNMPIQPNAVIWRTLLA----SCKVHKNVEIGEESLKQLIILEPTHSGDYILLSN 537

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417
           + A+    +       E      K+ GIK T    CS+I L G
Sbjct: 538 IYASVGRWEDALKVRGEM-----KEKGIKKTP--GCSLIELDG 573


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 151/504 (29%), Positives = 265/504 (52%), Gaps = 40/504 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFV--EIPQPSVVSWNSLISGYV 80
           +Q+H +I+++G     +V T L+    K++    ++ + V  ++  P+   W ++I GY 
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK-IVKYSLERGV 139
             G   ++ N +  + R  +   +++F++   ACG   ++ LG  +H++ I+       +
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDL 178

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            + N +ID+Y KCG +  A  VF EM ++D++SW  +I A                    
Sbjct: 179 YVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVA-------------------- 218

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                       A++GD+E A  +   +PS +  +W +++TGY    R  EAL  F +MQ
Sbjct: 219 -----------YAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQ 267

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS--IVVASALLDMYSKCGQ 317
              +  DE T + ++S  A L A+     I     + G   S  +VV SAL+DMYSKCG 
Sbjct: 268 DVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGS 327

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVL 376
            + A  +F  +  +N+ ++++MI GYA +G     ++LF + LKT  +++P+ VTF+ +L
Sbjct: 328 PDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKT--EIRPNKVTFIGIL 385

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
           +ACSH  +  ++  + F  M K +G+ P+ +H   M+ L+G+ G +  A  +++ +    
Sbjct: 386 SACSHAGL-VEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEP 444

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
            G VW ALL A     + D+A+I+A E+ KLE +    Y++L N+Y S G W+  S +R 
Sbjct: 445 NGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRK 504

Query: 497 FMRERGLRKEAGCSWIEVENVAAH 520
            +RE+G +K  GCSW E +N   H
Sbjct: 505 VIREKGFKKNPGCSWFEGKNGEIH 528


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 156/534 (29%), Positives = 278/534 (52%), Gaps = 42/534 (7%)

Query: 23   QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            +Q+H  +++SG    V V   L+  Y K  S++ A  +F ++ +  ++SWN++ISG   S
Sbjct: 955  KQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLS 1014

Query: 83   GKYRKALNLFVELERSEIYADAYSFTSALAACGQL-GSLQLGMAIHSKIVKYSLERGVVI 141
            G    ++ +FV L R  +  D ++  S L AC  L G   L   IH+  +K  +     +
Sbjct: 1015 GLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFV 1074

Query: 142  ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI------------------------ 177
            +  LID+Y K G +E+A  +F      D+ SWN+++                        
Sbjct: 1075 STALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGE 1134

Query: 178  ---------AASARNGNLELAFG------FLHRLPNPDTISYNEVINGIAQFGDIEDAIM 222
                     AA A  G + L  G       + R  N D    + V++   + G++E A  
Sbjct: 1135 RSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARR 1194

Query: 223  ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
            + S +PSP+  +W ++++G V   +   AL  + +M+   V  DEYTF+T++   + L+A
Sbjct: 1195 VFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTA 1254

Query: 283  LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
            L  G  IH+ ++K        V ++L+DMY+KCG +E A  +F+    + + +WNAMI G
Sbjct: 1255 LEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVG 1314

Query: 343  YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
             A++G+  + ++ F+ +K+ R + PD VTF+ VL+ACSH+ +   +  E F SM K+YGI
Sbjct: 1315 LAQHGNAKEALQFFKYMKS-RGVMPDRVTFIGVLSACSHSGL-VSEAYENFYSMQKNYGI 1372

Query: 403  KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
            +P +EH   ++  + + G +  A+++I  + F +   ++R LL+A     D +  +  A 
Sbjct: 1373 EPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAE 1432

Query: 463  EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            +++ LE      YV+L N+Y +   W+  +  RN MR+  ++K+ G SW++++N
Sbjct: 1433 KLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKN 1486



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 170/352 (48%), Gaps = 41/352 (11%)

Query: 69   VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
            V+ WN  +S ++Q G+  +A++ FV++  S +  D  +F   L     L  L+LG  IH 
Sbjct: 900  VIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHG 959

Query: 129  KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
             +++  L++ V + NCLI+MY K GSV  A  VFG+M + D+ISWN++I+    +G  E 
Sbjct: 960  IVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEEC 1019

Query: 189  AFG-FLHRLPN---PDTISYNEVINGIAQF------------------------------ 214
            + G F+H L +   PD  +   V+   +                                
Sbjct: 1020 SVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALI 1079

Query: 215  ------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268
                  G +E+A  +  +    + +SWN+I+ GY+     P+AL L+  MQ      D+ 
Sbjct: 1080 DVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQI 1139

Query: 269  TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
            T         GL  L  G  IH+ V+K+G +  + V S +LDMY KCG++E A  +F  +
Sbjct: 1140 TLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEI 1199

Query: 329  CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
               + V W  MI+G   NG     +  + Q++  + +QPD  TF  ++ ACS
Sbjct: 1200 PSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSK-VQPDEYTFATLVKACS 1250



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 119/395 (30%), Positives = 189/395 (47%), Gaps = 28/395 (7%)

Query: 7    FHLLR---ASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
            F +LR   A+SDL   +  ++ H  IL SG   + FV+  L+  Y K  SL+ A K+F  
Sbjct: 660  FSILRQAIAASDL---SLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDT 716

Query: 64   IPQPS--VVSWNSLISGYV-QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
             P  +  +V+WN+++S     + K     +LF  L RS +    ++       C    S 
Sbjct: 717  TPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASP 776

Query: 121  QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
                ++H   VK  L+  V +A  L+++Y K G + +A  +F  M  +D++ WN ++ A 
Sbjct: 777  SASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAY 836

Query: 181  ARNGNLE----LAFGFLHRLP-NPDTISYNEV---------INGIAQFGDIEDAIMILSS 226
              +  LE    L F   HR    PD ++   +         I  + QF      + +   
Sbjct: 837  V-DTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDD 895

Query: 227  MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
              S +   WN  L+ ++ R    EA+  F +M +  V  D  TF  ML+ +AGL+ L  G
Sbjct: 896  DGS-DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELG 954

Query: 287  MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
              IH  V++ GLD  + V + L++MY K G V  A S+F  +   +L++WN MI+G   +
Sbjct: 955  KQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLS 1014

Query: 347  GDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACS 380
            G     + +F  L  +RD L PD  T  +VL ACS
Sbjct: 1015 GLEECSVGMFVHL--LRDSLLPDQFTVASVLRACS 1047



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 174/370 (47%), Gaps = 43/370 (11%)

Query: 1    PNEYVLFHLLRASSDLGWDTY-CQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
            P+++ +  +LRA S L    Y   Q+H   +K+G + + FVSTAL+  Y K   + +A  
Sbjct: 1034 PDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEF 1093

Query: 60   MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
            +FV      + SWN+++ GY+ SG + KAL L++ ++ S   +D  +  +A  A G L  
Sbjct: 1094 LFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVG 1153

Query: 120  LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            L+ G  IH+ +VK      + + + ++DMY KCG +E A  VF E+   D ++W ++I+ 
Sbjct: 1154 LKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISG 1213

Query: 180  SARNGNLELAFGFLHRLP----NPDTISY------------------------------- 204
               NG  E A    H++      PD  ++                               
Sbjct: 1214 CVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFD 1273

Query: 205  ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                  +++  A+ G+IEDA  +     +   +SWN+++ G        EAL  F  M+S
Sbjct: 1274 PFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKS 1333

Query: 261  KDVPMDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
            + V  D  TF  +LS    +GL +  +    +S     G++  I   S L+D  S+ G++
Sbjct: 1334 RGVMPDRVTFIGVLSACSHSGLVSEAYENF-YSMQKNYGIEPEIEHYSCLVDALSRAGRI 1392

Query: 319  EIADSMFRSL 328
            E A+ +  S+
Sbjct: 1393 EEAEKVISSM 1402



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 177/369 (47%), Gaps = 14/369 (3%)

Query: 23   QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            + LH Y +K G   +VFV+ AL+  Y K   + +A  +F  +    VV WN ++  YV +
Sbjct: 780  ESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDT 839

Query: 83   GKYRKALNLFVELERSEIYADAYSFT--SALAACGQ-LGSLQLGMAIHSKIVKYSLE-RG 138
                +A+ LF E  R+    D  +    S +  C + +  L+   A  +K+  Y  +   
Sbjct: 840  CLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSD 899

Query: 139  VVIANCLIDMYGKCGSVEDAIGVFGEMIDK----DIISWNSVIAASARNGNLELA---FG 191
            V++ N  +  + + G   +A+  F +MI+     D +++  ++   A    LEL     G
Sbjct: 900  VIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHG 959

Query: 192  FLHRLPNPDTISY-NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE 250
             + R      +S  N +IN   + G +  A  +   M   +  SWN++++G         
Sbjct: 960  IVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEEC 1019

Query: 251  ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW-GMLIHSCVIKQGLDASIVVASALL 309
            ++ +F  +    +  D++T +++L   + L    +    IH+C +K G+     V++AL+
Sbjct: 1020 SVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALI 1079

Query: 310  DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
            D+YSK G++E A+ +F +    +L +WNA++ GY  +GD  K + L+  ++   + + D 
Sbjct: 1080 DVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGE-RSDQ 1138

Query: 370  VTFLNVLAA 378
            +T +N   A
Sbjct: 1139 ITLVNAAKA 1147


>gi|356506341|ref|XP_003521943.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Glycine max]
          Length = 895

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 165/540 (30%), Positives = 278/540 (51%), Gaps = 46/540 (8%)

Query: 16  LGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSL 75
            GW     QLH  ++K G    VF+  AL+  Y +   L +A ++F E+P+  +VSWN++
Sbjct: 193 FGW-----QLHSLVVKCGLGCEVFIGNALVTMYSRWGMLDEARRVFDEMPERDLVSWNAM 247

Query: 76  ISGYVQSGKYR--KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY 133
           ISGY Q GK    +A+ LFV + R  +  D  S T A++ACG + +L+LG  IH    K 
Sbjct: 248 ISGYAQEGKCYGLEAVLLFVNMVRHGMLIDHVSLTGAVSACGHMKNLELGRQIHGLTQKV 307

Query: 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA-----------ASAR 182
                V + N L+  Y KC   +DA  VF  + +++++SW ++I+           A   
Sbjct: 308 GYGTHVSVCNVLMSTYSKCEVPKDAKAVFESISNRNVVSWTTMISIDEEDAVSLFNAMRV 367

Query: 183 NG---NLELAFGFLHRLPNPDTISYNEVINGI--------------------AQFGDIED 219
           NG   N     G +H +   + ++    I+G+                    A+F  I++
Sbjct: 368 NGVYPNDVTFIGLIHAVTIRNLVTEGLTIHGLCIKSCFLSEQTVSNSFITMYAKFECIQE 427

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
           +  I   +    + SWN++++GY       EAL  +     K++  ++YTF ++L+ IA 
Sbjct: 428 STKIFEELNCRETVSWNALISGYAQNGSYKEALLTYLS-AVKEIKPNQYTFGSVLNAIAA 486

Query: 280 LS--ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
               +L  G   HS ++K GL    +V+ ALLDMY K G +  +  +F     +    W 
Sbjct: 487 AEDISLNHGKSCHSHLLKLGLGTDPIVSGALLDMYGKRGDIIESQRVFNETLERTQFAWT 546

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397
           A+I+ YAR+GD   V+ L+ +++    + PDS+TFL+VLAAC    +  D     F+SM 
Sbjct: 547 AIISAYARHGDFESVMSLYTEMER-EGINPDSITFLSVLAACCRKGM-VDAGHRVFDSMV 604

Query: 398 KDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
           K + I+PT EH   M+ ++G+ G +  A+ ++ ++  G    V ++LL +     ++++A
Sbjct: 605 KKHSIEPTSEHYSIMVDMLGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCRLHGNMEMA 664

Query: 458 RISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
                 +I+++  S   YV++ NLY   G W+  + +R  MR RG++KE G SW++V NV
Sbjct: 665 EKVVGRLIEMDPASSGPYVLMANLYAEKGKWEKVAEVRRGMRGRGVKKEVGFSWVDVSNV 724



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 125/475 (26%), Positives = 224/475 (47%), Gaps = 56/475 (11%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H + + SGF+S V VS +LM  Y K  +   A  +F  +  P +VSWN+++SG+ +S 
Sbjct: 98  QIHGFAVCSGFVSFVTVSNSLMKMYCKSGNFGKALIVFENLSHPDIVSWNTVLSGFEES- 156

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
               ALN    +    I  D  ++TSALA C        G  +HS +VK  L   V I N
Sbjct: 157 --VDALNFARSMHYCGIAFDPVTYTSALAFCWGDHGFLFGWQLHSLVVKCGLGCEVFIGN 214

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN---LELAFGFLHRLPNP- 199
            L+ MY + G +++A  VF EM ++D++SWN++I+  A+ G    LE    F++ + +  
Sbjct: 215 ALVTMYSRWGMLDEARRVFDEMPERDLVSWNAMISGYAQEGKCYGLEAVLLFVNMVRHGM 274

Query: 200 --DTISYNEVINGIAQFGDIE-----------------------------------DAIM 222
             D +S    ++      ++E                                   DA  
Sbjct: 275 LIDHVSLTGAVSACGHMKNLELGRQIHGLTQKVGYGTHVSVCNVLMSTYSKCEVPKDAKA 334

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           +  S+ + N  SW ++++  ++     +A+ LF  M+   V  ++ TF  ++  +   + 
Sbjct: 335 VFESISNRNVVSWTTMIS--IDEE---DAVSLFNAMRVNGVYPNDVTFIGLIHAVTIRNL 389

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           +T G+ IH   IK    +   V+++ + MY+K   ++ +  +F  L  +  V+WNA+I+G
Sbjct: 390 VTEGLTIHGLCIKSCFLSEQTVSNSFITMYAKFECIQESTKIFEELNCRETVSWNALISG 449

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL-AACSHTDIPFDKVSEYFESMTK-DY 400
           YA+NG   +   L   L  V++++P+  TF +VL A  +  DI  +        + K   
Sbjct: 450 YAQNGSYKEA--LLTYLSAVKEIKPNQYTFGSVLNAIAAAEDISLNHGKSCHSHLLKLGL 507

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLD 455
           G  P V    +++ + G++G++  +QR+  E         W A++SA     D +
Sbjct: 508 GTDPIVS--GALLDMYGKRGDIIESQRVFNET-LERTQFAWTAIISAYARHGDFE 559



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 153/322 (47%), Gaps = 30/322 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+     L+ A +     T    +H   +KS FLS   VS + +  Y K   + ++ K+
Sbjct: 372 PNDVTFIGLIHAVTIRNLVTEGLTIHGLCIKSCFLSEQTVSNSFITMYAKFECIQESTKI 431

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG-- 118
           F E+     VSWN+LISGY Q+G Y++AL  ++   + EI  + Y+F S L A       
Sbjct: 432 FEELNCRETVSWNALISGYAQNGSYKEALLTYLSAVK-EIKPNQYTFGSVLNAIAAAEDI 490

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           SL  G + HS ++K  L    +++  L+DMYGK G + ++  VF E +++   +W ++I+
Sbjct: 491 SLNHGKSCHSHLLKLGLGTDPIVSGALLDMYGKRGDIIESQRVFNETLERTQFAWTAIIS 550

Query: 179 ASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS-- 232
           A AR+G+ E        +     NPD+I++  V+    + G ++    +  SM   +S  
Sbjct: 551 AYARHGDFESVMSLYTEMEREGINPDSITFLSVLAACCRKGMVDAGHRVFDSMVKKHSIE 610

Query: 233 --SSWNSILTGYVNR-NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
             S   SI+   + R  R+ EA  L  +                + G  GLS L    L+
Sbjct: 611 PTSEHYSIMVDMLGRVGRLDEAEELMHQ----------------IPGGPGLSVLQ--SLL 652

Query: 290 HSCVIKQGLDASIVVASALLDM 311
            SC +   ++ +  V   L++M
Sbjct: 653 GSCRLHGNMEMAEKVVGRLIEM 674



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/457 (22%), Positives = 194/457 (42%), Gaps = 50/457 (10%)

Query: 51  INSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSA 110
            ++L   H  F  IP P+  S N  +   + S    +AL  F    +     +    T A
Sbjct: 24  FHALKHDHHQFDFIPHPNAASVNHSMLNCLHSRLPFQALTAFKNHFQLHSLENVDEVTVA 83

Query: 111 LAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI 170
           L+     G  +LG  IH   V       V ++N L+ MY K G+   A+ VF  +   DI
Sbjct: 84  LSLKACQGESKLGCQIHGFAVCSGFVSFVTVSNSLMKMYCKSGNFGKALIVFENLSHPDI 143

Query: 171 ISWNSVIAASARN------------------------------GNLELAFGF-LHRLP-- 197
           +SWN+V++    +                              G+    FG+ LH L   
Sbjct: 144 VSWNTVLSGFEESVDALNFARSMHYCGIAFDPVTYTSALAFCWGDHGFLFGWQLHSLVVK 203

Query: 198 ---NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV--PEAL 252
                +    N ++   +++G +++A  +   MP  +  SWN++++GY    +    EA+
Sbjct: 204 CGLGCEVFIGNALVTMYSRWGMLDEARRVFDEMPERDLVSWNAMISGYAQEGKCYGLEAV 263

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
            LF  M    + +D  + +  +S    +  L  G  IH    K G    + V + L+  Y
Sbjct: 264 LLFVNMVRHGMLIDHVSLTGAVSACGHMKNLELGRQIHGLTQKVGYGTHVSVCNVLMSTY 323

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
           SKC   + A ++F S+  +N+V+W  MI+      D    + LF  ++ V  + P+ VTF
Sbjct: 324 SKCEVPKDAKAVFESISNRNVVSWTTMIS-----IDEEDAVSLFNAMR-VNGVYPNDVTF 377

Query: 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
           + ++ A +  ++  + ++ +   +   +  + TV +  S I +  +   +  + ++  EL
Sbjct: 378 IGLIHAVTIRNLVTEGLTIHGLCIKSCFLSEQTVSN--SFITMYAKFECIQESTKIFEEL 435

Query: 433 GFGSYGVVWRALLSA---SGACSDLDVARISAAEVIK 466
                 V W AL+S    +G+  +  +  +SA + IK
Sbjct: 436 NCRET-VSWNALISGYAQNGSYKEALLTYLSAVKEIK 471



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 110/208 (52%), Gaps = 6/208 (2%)

Query: 1   PNEYVLFHLLRA---SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
           PN+Y    +L A   + D+  + + +  H ++LK G  ++  VS AL+  Y K   + ++
Sbjct: 472 PNQYTFGSVLNAIAAAEDISLN-HGKSCHSHLLKLGLGTDPIVSGALLDMYGKRGDIIES 530

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
            ++F E  + +  +W ++IS Y + G +   ++L+ E+ER  I  D+ +F S LAAC + 
Sbjct: 531 QRVFNETLERTQFAWTAIISAYARHGDFESVMSLYTEMEREGINPDSITFLSVLAACCRK 590

Query: 118 GSLQLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNS 175
           G +  G  +   +V K+S+E      + ++DM G+ G +++A  +  ++     +S   S
Sbjct: 591 GMVDAGHRVFDSMVKKHSIEPTSEHYSIMVDMLGRVGRLDEAEELMHQIPGGPGLSVLQS 650

Query: 176 VIAASARNGNLELAFGFLHRLPNPDTIS 203
           ++ +   +GN+E+A   + RL   D  S
Sbjct: 651 LLGSCRLHGNMEMAEKVVGRLIEMDPAS 678


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 159/556 (28%), Positives = 294/556 (52%), Gaps = 42/556 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N++V   LL+    +     C  +H Y+ K G  ++ FV TAL+  Y    ++  A ++F
Sbjct: 103 NQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVF 162

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             I    +VSW  +++ Y ++  +  +L LF ++       + ++ ++AL +C  L + +
Sbjct: 163 DGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFK 222

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           +G ++H   +K   +R + +   L+++Y K G + +A   F EM   D+I W+ +I+  A
Sbjct: 223 VGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYA 282

Query: 182 RNGNLELAFGFLHRLPN-----PDTISY-------------------------------- 204
           ++   + A     R+       P+  ++                                
Sbjct: 283 QSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNV 342

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +++  A+ G+IE+++ + +     N  +WN+I+ GYV      +AL+LF  M   
Sbjct: 343 FVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGL 402

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           D+   E T+S++L   A L AL  G  IHS  IK   +   VVA++L+DMY+KCG+++ A
Sbjct: 403 DIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDA 462

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F  + +++ V+WNA+I GY+ +G   + + LF+ ++   + +P+ +TF+ VL+ACS+
Sbjct: 463 RLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQ-SNSKPNKLTFVGVLSACSN 521

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  DK   +F+SM +DYGI+P +EH   M+ L+G+ G+   A ++I E+ F    +VW
Sbjct: 522 AGL-LDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVW 580

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           RALL A     +LD+ ++ A  V+++E   D  +V+L N+Y +   WD  + +R  M+++
Sbjct: 581 RALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKK 640

Query: 502 GLRKEAGCSWIEVENV 517
            ++KE G SW+E + V
Sbjct: 641 KVKKEPGLSWVENQGV 656



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/396 (30%), Positives = 195/396 (49%), Gaps = 41/396 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + LHC+ILK G   ++F    L+  Y     L DA K+F E+P  + VS+ +L  G+ +S
Sbjct: 23  KSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRS 82

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            ++++A  L + L R     + + FT+ L     +      +++H+ + K   +    + 
Sbjct: 83  HQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVG 142

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------ 196
             LID Y  CG+V+ A  VF  +  KD++SW  ++A  A N   E +     ++      
Sbjct: 143 TALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYR 202

Query: 197 PNPDTISYN-EVINGIAQF--------------------------------GDIEDAIMI 223
           PN  TIS   +  NG+  F                                G+I +A   
Sbjct: 203 PNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQF 262

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLSA 282
              MP  +   W+ +++ Y   ++  EAL LF  M QS  V  + +TF+++L   A L  
Sbjct: 263 FEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVL 322

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G  IHSCV+K GLD+++ V++AL+D+Y+KCG++E +  +F     KN V WN +I G
Sbjct: 323 LNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVG 382

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           Y + GD  K + LF  +  + D+QP  VT+ +VL A
Sbjct: 383 YVQLGDGEKALNLFSNMLGL-DIQPTEVTYSSVLRA 417



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 189/396 (47%), Gaps = 44/396 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + +   L++ + L      + +H   LK  +  +++V  AL+  Y K   +A+A + 
Sbjct: 203 PNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQF 262

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA-DAYSFTSALAACGQLGS 119
           F E+P+  ++ W+ +IS Y QS K ++AL LF  + +S +   + ++F S L AC  L  
Sbjct: 263 FEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVL 322

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L LG  IHS ++K  L+  V ++N L+D+Y KCG +E+++ +F    +K+ ++WN++I  
Sbjct: 323 LNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVG 382

Query: 180 SARNGNLELAFGF----------------------------------LHRLP-----NPD 200
             + G+ E A                                     +H L      N D
Sbjct: 383 YVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKD 442

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
           ++  N +I+  A+ G I+DA +    M   +  SWN+++ GY       EAL+LF  MQ 
Sbjct: 443 SVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQ 502

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVE 319
            +   ++ TF  +LS  +    L  G      +++  G++  I   + ++ +  + GQ +
Sbjct: 503 SNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFD 562

Query: 320 IADSMFRSL-CRKNLVTWNAMITGYA--RNGDLTKV 352
            A  +   +  + +++ W A++      +N DL KV
Sbjct: 563 EAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKV 598



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 151/320 (47%), Gaps = 27/320 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +    +L+A + L       Q+H  +LK G  SNVFVS ALM  Y K   + ++ K+
Sbjct: 305 PNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKL 364

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    + + V+WN++I GYVQ G   KALNLF  +   +I     +++S L A   L +L
Sbjct: 365 FTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVAL 424

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IHS  +K    +  V+AN LIDMY KCG ++DA   F +M  +D +SWN++I   
Sbjct: 425 EPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGY 484

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
           + +G    A      +      P+ +++  V++  +  G ++       SM       P 
Sbjct: 485 SIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPC 544

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  ++       +  EA+ L GE     +P                S + W  L+ +
Sbjct: 545 IEHYTCMVWLLGRSGQFDEAVKLIGE-----IPFQP-------------SVMVWRALLGA 586

Query: 292 CVIKQGLDASIVVASALLDM 311
           CVI + LD   V A  +L+M
Sbjct: 587 CVIHKNLDLGKVCAQRVLEM 606



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 109/233 (46%), Gaps = 3/233 (1%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           D  + N ++N    FG +EDA  +   MP  N+ S+ ++  G+   ++   A  L   + 
Sbjct: 37  DLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLF 96

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            +   ++++ F+T+L  +  +      + +H+ V K G  A   V +AL+D YS CG V+
Sbjct: 97  REGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVD 156

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F  +  K++V+W  M+  YA N      + LF Q++ +   +P++ T    L +C
Sbjct: 157 AARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMR-IMGYRPNNFTISAALKSC 215

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
           +   +   KV +              +    +++ L  + GE+  AQ+   E+
Sbjct: 216 N--GLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEM 266


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 164/533 (30%), Positives = 274/533 (51%), Gaps = 47/533 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + LH   + SGF ++ FV++AL   Y  ++   DA K+F  +P P  V WN+L++G   S
Sbjct: 143 RPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLSGS 202

Query: 83  GKYRKALNLFVELERS-EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
               +AL  FV +  +  +  D+ +  S L A  ++ +  +G  +H+   K  L +   +
Sbjct: 203 ----EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHV 258

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----- 196
              LI +Y KCG +E A  +F  M   D++++N++I+  + NG +  +      L     
Sbjct: 259 VTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGL 318

Query: 197 -PNPDTISY---------NEVINGI------------------------AQFGDIEDAIM 222
            P+  T+           +E + G                          +F D++ A  
Sbjct: 319 RPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARR 378

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
              +MP     SWN++++GY        A+ LF +MQ+ +V  +  T S+ LS  A L A
Sbjct: 379 AFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGA 438

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L+ G  +H  +  + L+ ++ V +AL+DMY KCG +  A  +F S+  KN+V+WN MI+G
Sbjct: 439 LSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISG 498

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           Y  +G   + ++L++ +     L P S TFL+VL ACSH  +   + +  F SMT DYGI
Sbjct: 499 YGLHGQGAEALKLYKDMMDAH-LHPTSSTFLSVLYACSHGGL-VKEGTTVFRSMTSDYGI 556

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV-VWRALLSASGACSDLDVARISA 461
            P +EHC  M+ L+G+ G++  A  +I E    + G  +W ALL A     D D+A++++
Sbjct: 557 TPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLAS 616

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
            ++ +LE ++   YV+L NLYTS   +  A+V+R   + R L K  GC+ IE+
Sbjct: 617 QKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEI 669



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 160/315 (50%), Gaps = 16/315 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  L+   S  G +     LH +++K+G  +N  VSTAL   Y + N +  A + 
Sbjct: 320 PSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRA 379

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+ ++ SWN++ISGY Q+G    A+ LF +++   +  +  + +SAL+AC QLG+L
Sbjct: 380 FDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGAL 439

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  +H  I    LE  V +   LIDMY KCGS+ +A  +F  M +K+++SWN +I+  
Sbjct: 440 SLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGY 499

Query: 181 ARNGN----LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
             +G     L+L    +    +P + ++  V+   +  G +++   +  SM     +S  
Sbjct: 500 GLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSM-----TSDY 554

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
            I  G  +   + + L   G+++     + E+  S +  GI       WG L+ +C++ +
Sbjct: 555 GITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGI-------WGALLGACMVHK 607

Query: 297 GLDASIVVASALLDM 311
             D + + +  L ++
Sbjct: 608 DGDLAKLASQKLFEL 622



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/423 (23%), Positives = 183/423 (43%), Gaps = 53/423 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L A++++   T  + +H +  K G   +  V T L+  Y K   +  A  +
Sbjct: 219 PDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHL 278

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +  P +V++N+LISGY  +G    ++ LF EL    +   + +  + +      G  
Sbjct: 279 FDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHE 338

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            L   +H+ +VK  L+    ++  L  +Y +   ++ A   F  M +K + SWN++I+  
Sbjct: 339 PLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGY 398

Query: 181 ARNGNLELAFGFLHRL------PNPDTIS----------------------YNE------ 206
           A+NG  E+A     ++      PNP TIS                       NE      
Sbjct: 399 AQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNV 458

Query: 207 -----VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                +I+   + G I +A  I  SM + N  SWN +++GY    +  EAL L+ +M   
Sbjct: 459 YVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDA 518

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLI-HSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            +     TF ++L   +    +  G  +  S     G+   I   + ++D+  + GQ++ 
Sbjct: 519 HLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKE 578

Query: 321 ADSMFRSLCRKNLVT--WNAMITG--YARNGDLTKVI--ELFEQLKTVRDLQPDSVTFLN 374
           A  +     +  +    W A++      ++GDL K+   +LFE       L+P++  +  
Sbjct: 579 AFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFE-------LEPENTGYYV 631

Query: 375 VLA 377
           +L+
Sbjct: 632 LLS 634


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/523 (31%), Positives = 269/523 (51%), Gaps = 35/523 (6%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N   L  L +A + +      +++H + LK GF S +FVS AL+  Y     L  A KMF
Sbjct: 115 NNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMF 174

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +    +VSWN+LI GY Q  KY++ L LF  +  + I ADA +    + AC  LG  +
Sbjct: 175 DGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWE 234

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
              ++   I + +LE  V + N LIDMYG                               
Sbjct: 235 FADSMVKYIKENNLEIDVYLGNTLIDMYG------------------------------- 263

Query: 182 RNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTG 241
           R    ELA G   R+   + +S+N ++ G A+ G++  A  +  +MP  +  SW S++TG
Sbjct: 264 RRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITG 323

Query: 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
           Y   ++  +A+ LF EM +  V  D+ T +++LS  A L  L  G  +H  + + G+ A 
Sbjct: 324 YSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQAD 383

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
           I V ++L+DMY KCG VE A  +F  +  K+ V+W ++I+G A NG     ++LF Q+  
Sbjct: 384 IYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQM-- 441

Query: 362 VRD-LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
           +R+ +QP   TF+ +L AC+H  +  +K  EYFESM   +G+ P ++H   ++ L+ + G
Sbjct: 442 LREGVQPTHGTFVGILLACAHAGL-VNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSG 500

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
            + +A   I+++      VVWR LLSA     ++ +A I+   +++L+      YV+L N
Sbjct: 501 NIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSN 560

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAHSSN 523
            Y     WD A  MR  M +  ++K +G S IEV+ + ++ S 
Sbjct: 561 TYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVDGMVSNYSQ 603



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 124/248 (50%), Gaps = 14/248 (5%)

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275
           ++  A ++ + +  P    WN ++ G    +   EA+H++  M  + +  +  T   +  
Sbjct: 65  NLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFK 124

Query: 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335
             A +S +  G  IH   +K G ++ + V++AL+ MY+ CGQ+  A  MF  +  ++LV+
Sbjct: 125 ACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVS 184

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT-DIPF-DKVSEYF 393
           WN +I GY++     +V+ LF+ + T  +++ D+VT + ++ ACSH  D  F D + +Y 
Sbjct: 185 WNTLICGYSQYNKYKEVLRLFDAM-TAANIKADAVTMVKIILACSHLGDWEFADSMVKYI 243

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM---IRELGFGSYGVVWRALLSASGA 450
               K+  ++  V    ++I + G++     AQ +   +RE       V W AL+     
Sbjct: 244 ----KENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNI----VSWNALVMGHAK 295

Query: 451 CSDLDVAR 458
             +L  AR
Sbjct: 296 VGNLTAAR 303



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 113/244 (46%), Gaps = 10/244 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  +  +L A + LG       +H YI + G  ++++V  +L+  Y K   +  A ++
Sbjct: 347 PDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEV 406

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     VSW S+ISG   +G    AL+LF ++ R  +     +F   L AC   G +
Sbjct: 407 FHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLV 466

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G+     +   + L   +    C++D+  + G+++ A     +M I  D++ W  +++
Sbjct: 467 NKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLS 526

Query: 179 ASARNGNL---ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDA-----IMILSSMPSP 230
           A   +GN+   E+A   L  L   D+ +Y  + N  A     +DA     +M  S +  P
Sbjct: 527 ACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKP 586

Query: 231 NSSS 234
           + SS
Sbjct: 587 SGSS 590


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 158/553 (28%), Positives = 287/553 (51%), Gaps = 39/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y +  ++ A ++ G      Q+H  ++K GF +   V  +L+    K   L DA  +
Sbjct: 201 PDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVV 260

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     VSWNS+I+G+V +G+  +A   F  ++ +       +F S + +C  L  L
Sbjct: 261 FDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKEL 320

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIAA 179
            L   +H K +K  L     +   L+    KC  ++DA  +F  M   + ++SW ++I+ 
Sbjct: 321 GLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISG 380

Query: 180 SARNGNLELA---FGFLHR---LPNPDTIS--------------YNEVI----------- 208
             +NG+ + A   F  + R    PN  T S              + EVI           
Sbjct: 381 YLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEIHAEVIKTNYEKSSSVG 440

Query: 209 ----NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
               +   + G+I DA+ +   + + +  +W+++L GY       EA  +F ++  + + 
Sbjct: 441 TALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIK 500

Query: 265 MDEYTFSTMLSG-IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
            +E+TF ++++   A  +++  G   H+  IK  L+ ++ V+S+L+ +Y+K G +E A  
Sbjct: 501 PNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHE 560

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F+    ++LV+WN+MI+GYA++G   K +E+FE+++  R+L+ D++TF+ V++AC+H  
Sbjct: 561 IFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQK-RNLEVDAITFIGVISACAHAG 619

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
           +   K   YF  M  D+ I PT+EH   MI L  + G + +A  +I  + F     VWR 
Sbjct: 620 L-VGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRI 678

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           +L+AS    ++++ +++A ++I LE      YV+L N+Y + GNW     +R  M +R +
Sbjct: 679 VLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRV 738

Query: 504 RKEAGCSWIEVEN 516
           +KE G SWIEV+N
Sbjct: 739 KKEPGYSWIEVKN 751



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 223/475 (46%), Gaps = 54/475 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y +  +L   +     T  +Q+HC  +K G + ++ V  +L+  Y K  ++ D  ++
Sbjct: 100 PDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRV 159

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+    VVSWNSL++GY  +    +   LF  ++      D Y+ ++ +AA    G++
Sbjct: 160 FDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAV 219

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +GM IH+ +VK   E   ++ N LI M  K G + DA  VF  M +KD +SWNS+IA  
Sbjct: 220 AIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGH 279

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQF---------------------- 214
             NG    AF   + +      P   ++  VI   A                        
Sbjct: 280 VINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQ 339

Query: 215 -------------GDIEDAIMILSSMPSPNS-SSWNSILTGYVNRNRVPEALHLFGEMQS 260
                         +I+DA  + S M    S  SW ++++GY+      +A++LF  M+ 
Sbjct: 340 NVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRR 399

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           + V  + +T+ST+L+    +    +   IH+ VIK   + S  V +ALLD + K G +  
Sbjct: 400 EGVKPNHFTYSTILT----VQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISD 455

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  +  K+++ W+AM+ GYA+ G+  +  ++F QL T   ++P+  TF +++ AC+
Sbjct: 456 AVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQL-TREGIKPNEFTFCSIINACT 514

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHC----CSMIRLMGQKGEVWRAQRMIRE 431
                 ++  ++       Y IK  + +      S++ L  ++G +  A  + + 
Sbjct: 515 APTASVEQGKQFHA-----YAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKR 564



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 178/363 (49%), Gaps = 45/363 (12%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A ++F + P   +   N L+  Y +  + ++AL+LFV L RS +  D+Y+ +  L+ C  
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS- 175
             +  +G  +H + VK  L   + + N L+DMY K G+V D   VF EM D+D++SWNS 
Sbjct: 115 SFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSL 174

Query: 176 ----------------------------------VIAASARNGNLELAFGFLHRLP---- 197
                                             VIAA A  G + +    +H L     
Sbjct: 175 LTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQ-IHALVVKLG 233

Query: 198 -NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
              + +  N +I+ +++ G + DA ++  +M + +S SWNS++ G+V   +  EA   F 
Sbjct: 234 FETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFN 293

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
            MQ         TF++++   A L  L    ++H   +K GL  +  V +AL+   +KC 
Sbjct: 294 NMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCK 353

Query: 317 QVEIADSMFRSLCR--KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           +++ A S+F SL    +++V+W AMI+GY +NGD  + + LF  ++    ++P+  T+  
Sbjct: 354 EIDDAFSLF-SLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRR-EGVKPNHFTYST 411

Query: 375 VLA 377
           +L 
Sbjct: 412 ILT 414


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 164/537 (30%), Positives = 287/537 (53%), Gaps = 48/537 (8%)

Query: 25  LHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           +H ++L++G     + VS  L+  Y K  ++  A K+F  +     +SWN++IS   Q+G
Sbjct: 401 VHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNG 460

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
              +A+  +  + +S I    ++  S+L++C  L  L  G  +H   VK+ L+    ++N
Sbjct: 461 NCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSN 520

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA-----------------RNGNL 186
            L+ MYG+CG++ D   VF  M + D +SWN+++   A                 R G +
Sbjct: 521 VLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLI 580

Query: 187 ELAFGFLHRLP--NP---------------------DTISYNEVINGIAQFGDIEDAIMI 223
                F++ L   +P                     D +  N +I+  A+ GD+     +
Sbjct: 581 PNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHL 640

Query: 224 LSSMPSPNSS-SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
            ++M     + SWNS+++GY+    + EA+     M      MD  TFS +L+  A ++A
Sbjct: 641 FTNMSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAA 700

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  GM +H+  I+  L++ +VV SAL+DMYSKCG+V+ A  +F S+ ++N  +WN+MI+G
Sbjct: 701 LERGMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISG 760

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           YAR+G   K IE+FE++   R+  PD VTF++VL+ACSH  +  ++  EYFE M  D+GI
Sbjct: 761 YARHGLGRKAIEIFEEMLRSRE-SPDHVTFVSVLSACSHAGL-VERGLEYFE-MMPDHGI 817

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA---SGACSDLDVARI 459
            P +EH   +I L+G+ G++ + +  I+ +      ++WR +L A   S   S++D+ R 
Sbjct: 818 LPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGRE 877

Query: 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           ++  ++++E  +   YV+  N + + G W+  +  R  MR+   +KEAG SW+ + +
Sbjct: 878 ASRVLLEIEPQNPVNYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLND 934



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 109/433 (25%), Positives = 198/433 (45%), Gaps = 65/433 (15%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65
           L  LLR   D       + LH  ++K G   ++F+   L+  Y K   LA A ++F E+P
Sbjct: 67  LLPLLRRGGDANSP---ENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMP 123

Query: 66  QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA----DAYSFTSALAACGQLGSLQ 121
           + + VSW  L+SGYV  G   +A  +F  + R E+ A     +++F + L AC   G  +
Sbjct: 124 ERNAVSWTCLVSGYVLHGIAEEAFRVFRAMLR-EVQAGCRPTSFTFGTLLRACQDGGPDR 182

Query: 122 LGMA--IHSKIVKYSLERGVVIANCLIDMYGKC--GSVEDAIGVFGEMIDKDIISWNSVI 177
           LG A  +H  + K        + N LI MYG C  G    A  VF     +D+I+WN+++
Sbjct: 183 LGFAVQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALM 242

Query: 178 AASARNGNLELAFGFLHRL----------PNPDTISY----------------------- 204
           +  A+ G++   F     +          P   T                          
Sbjct: 243 SVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVL 302

Query: 205 -----------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
                      + +++  A+ G  ++A  I  S+   N+ + N ++ G V ++   EA+ 
Sbjct: 303 KSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVK 362

Query: 254 LF-GEMQSKDVPMDEYTFSTMLSGIAGLS----ALTWGMLIHSCVIKQGL-DASIVVASA 307
           +F G   + DV  D  T+  +LS +A  S     L  G ++H  +++ GL D  I V++ 
Sbjct: 363 IFVGTRNTVDVNAD--TYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNG 420

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           L++MY+KCG +E A  +F+ +   + ++WN +I+   +NG+  + +  +  ++    + P
Sbjct: 421 LVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQ-SCISP 479

Query: 368 DSVTFLNVLAACS 380
            +   ++ L++C+
Sbjct: 480 SNFALISSLSSCA 492



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 121/233 (51%), Gaps = 5/233 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+    +LL A S L      +Q+H  ++K G + +  V  AL+  Y K   +     +
Sbjct: 581 PNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHL 640

Query: 61  FVEIP-QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F  +  +   +SWNS+ISGY+ +G  ++A++    +  S    D  +F+  L AC  + +
Sbjct: 641 FTNMSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAA 700

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+ GM +H+  ++  LE  VV+ + L+DMY KCG V+ A  +F  M  ++  SWNS+I+ 
Sbjct: 701 LERGMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISG 760

Query: 180 SARNG----NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP 228
            AR+G     +E+    L    +PD +++  V++  +  G +E  +     MP
Sbjct: 761 YARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMP 813



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 189/414 (45%), Gaps = 48/414 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + L   L + + L   T  QQ+HC  +K G   +  VS  L+  Y +  +++D  K+
Sbjct: 479 PSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKV 538

Query: 61  FVEIPQPSVVSWNSLISGYVQSGK--YRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           F  + +   VSWN+++ G + S +    + + +F  + R  +  +  +F + LAA   L 
Sbjct: 539 FNSMAEHDEVSWNTMM-GVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLS 597

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVI 177
            L+LG  +H+ ++K+ +    V+ N LI  Y K G +     +F  M D +D ISWNS+I
Sbjct: 598 VLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMI 657

Query: 178 AASARNGNLE----------------------------------------LAFGFLHRLP 197
           +    NGNL+                                         AFG    L 
Sbjct: 658 SGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLE 717

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
           + D +  + +++  ++ G ++ A  + +SM   N  SWNS+++GY       +A+ +F E
Sbjct: 718 S-DVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEE 776

Query: 258 M-QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           M +S++ P D  TF ++LS  +    +  G+     +   G+   I   S ++D+  + G
Sbjct: 777 MLRSRESP-DHVTFVSVLSACSHAGLVERGLEYFEMMPDHGILPQIEHYSCVIDLLGRAG 835

Query: 317 QVE-IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
           +++ I + + R     N + W  ++    ++ D + +    E  + + +++P +
Sbjct: 836 KIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQN 889


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 159/557 (28%), Positives = 288/557 (51%), Gaps = 47/557 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL-SNVFVSTALMGFYRKINSLADAHK 59
           P+ +    L+RA+     +    QLH   L+ G +  +VF S +L+  Y +   +++A+K
Sbjct: 68  PDGFTFPSLIRAAPS---NASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYK 124

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F E+ +  V +WN+++SG  ++ +  +A+ LF  +    +  D  + +S L  C  LG 
Sbjct: 125 VFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGD 184

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
             L + +H   VK+ L++ + + N LID+YGK G +E+A  VF  M  +D+++WNS+I+ 
Sbjct: 185 QVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISG 244

Query: 180 SARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGD------------------- 216
             + G    A      +     +PD ++   + + IAQ GD                   
Sbjct: 245 CEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVD 304

Query: 217 -----------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                            IE A  +  SMP  +S SWN+++TGY+      EA+  +G MQ
Sbjct: 305 DIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQ 364

Query: 260 SKD-VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
             + +   + TF ++L   + L AL  GM +H+  IK GL+  + V + L+D+Y+KCG++
Sbjct: 365 KHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKL 424

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
             A  +F  + R++   WNA+I+G   +G   + + LF +++    ++PD VTF+++LAA
Sbjct: 425 AEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQ-EGIKPDHVTFVSLLAA 483

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH  +  D+   +F+ M   Y I P  +H   M  ++G+ G++  A   I+ +      
Sbjct: 484 CSHAGL-VDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDS 542

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
            VW ALL A     ++++ ++++  + +L+ ++   YV++ N+Y   G WD    +R+ +
Sbjct: 543 AVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLV 602

Query: 499 RERGLRKEAGCSWIEVE 515
           R + L+K  G S IEV+
Sbjct: 603 RRQNLQKTPGWSSIEVK 619


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 156/534 (29%), Positives = 274/534 (51%), Gaps = 42/534 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H   L+    S++ V+T LM  Y K      A ++F  +    +V+W+++I+  VQ+
Sbjct: 349 KEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQT 408

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   +AL+LF E++  ++  +  +  S L AC  L  L+LG +IH   VK  ++  +   
Sbjct: 409 GYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTG 468

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
             L+ MY KCG    A+  F  M  +DI++WNS+I   A+ G+   A    ++L     N
Sbjct: 469 TALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAIN 528

Query: 199 PDTISYNEVINGIAQFGDIEDAIMI-------------------------LSSMPS---- 229
           PD  +   V+   A   D++    I                           S+PS    
Sbjct: 529 PDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFL 588

Query: 230 -------PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
                   +  +WN I+  Y+      EA+  F +M+ ++   +  TF ++L   A L+A
Sbjct: 589 FNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAA 648

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
              GM  H+C+I+ G  ++ +V ++L+DMY+KCGQ++ ++ +F  +  K+ V+WNAM++G
Sbjct: 649 FREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSG 708

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           YA +G   + I LF  ++  + +Q DSV+F++VL+AC H  +  ++  + F SM+  Y I
Sbjct: 709 YAVHGHGDRAIALFSLMQESQ-VQIDSVSFVSVLSACRHAGL-VEEGRKIFHSMSDKYHI 766

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
           KP +EH   M+ L+G+ G        I+ +       VW ALL +    S++ +  ++  
Sbjct: 767 KPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALD 826

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++KLE  +   +V+L ++Y   G W  A   R+ M + GL+K  GCSW+E++N
Sbjct: 827 HLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKN 880



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 195/394 (49%), Gaps = 39/394 (9%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H  I+ SGF  +  + T L+  Y   +    A  +F   P PS + WNS+I  Y +S 
Sbjct: 50  QIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSK 108

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           +Y +AL ++  +    +  D Y+FT  L AC    +LQ G+  H +I +  LER V I  
Sbjct: 109 QYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGA 168

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NP 199
            L+DMY K G ++ A  VF +M  +D+++WN++IA  +++ +   A  F   +      P
Sbjct: 169 GLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEP 228

Query: 200 DTISYNEVINGIAQF---------------------------------GDIEDAIMILSS 226
            ++S   +  GI +                                  GD++ A  +   
Sbjct: 229 SSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQ 288

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           M   +  SW +++ GY +     E L LF +M+  +V +++ +  +     A    L  G
Sbjct: 289 MVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKG 348

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
             IH C ++Q +D+ I+VA+ L+ MY+KCG+ E A  +F  L  ++LV W+A+I    + 
Sbjct: 349 KEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQT 408

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           G   + + LF++++  + ++P+ VT +++L AC+
Sbjct: 409 GYPEEALSLFQEMQN-QKMKPNRVTLMSILPACA 441



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 133/565 (23%), Positives = 247/565 (43%), Gaps = 89/565 (15%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L +L      L     C+ +H Y+ +  F S V  S  L+  Y K   +  A ++
Sbjct: 228 PSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAV--SNGLIDLYSKCGDVDVARRV 285

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++     VSW ++++GY  +G + + L LF +++   +  +  S  SA  A  +   L
Sbjct: 286 FDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDL 345

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH   ++  ++  +++A  L+ MY KCG  E A  +F  +  +D+++W+++IAA 
Sbjct: 346 EKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAAL 405

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQF---------------------- 214
            + G  E A      + N    P+ ++   ++   A                        
Sbjct: 406 VQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDL 465

Query: 215 -------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                        G    A+   + M S +  +WNS++ GY        A+ +F +++  
Sbjct: 466 STGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLS 525

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D  T   ++   A L+ L  G  IH  ++K G ++   V +AL+DMY+KCG +  A
Sbjct: 526 AINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSA 585

Query: 322 DSMF-RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           + +F ++   K+ VTWN +I  Y +NG   + I  F Q++ + +  P+SVTF++VL A +
Sbjct: 586 EFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMR-LENFHPNSVTFVSVLPAAA 644

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           +       ++ + E M           H C                  I ++GF S  +V
Sbjct: 645 Y-------LAAFREGMAF---------HAC------------------IIQMGFLSNTLV 670

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNL----YTSHGNWDVASVMRN 496
             +L+     C  LD +        KL  + D+   +  N     Y  HG+ D A  + +
Sbjct: 671 GNSLIDMYAKCGQLDYSE-------KLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFS 723

Query: 497 FMRERGLRKEAGCSWIEVENVAAHS 521
            M+E  ++ ++  S++ V +   H+
Sbjct: 724 LMQESQVQIDS-VSFVSVLSACRHA 747



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 162/357 (45%), Gaps = 41/357 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  +L A +DL      + +HC+ +K+   S++   TAL+  Y K      A   
Sbjct: 428 PNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTT 487

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    +V+WNSLI+GY Q G    A+++F +L  S I  DA +    + AC  L  L
Sbjct: 488 FNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDL 547

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
             G  IH  IVK   E    + N LIDMY KCGS+  A  +F +    KD ++WN +IAA
Sbjct: 548 DQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607

Query: 180 SARNGNLELAFGFLH--RLPN--PDTISY------------------------------- 204
             +NG+ + A    H  RL N  P+++++                               
Sbjct: 608 YMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSN 667

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +I+  A+ G ++ +  + + M   ++ SWN++L+GY        A+ LF  MQ 
Sbjct: 668 TLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQE 727

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLI-HSCVIKQGLDASIVVASALLDMYSKCG 316
             V +D  +F ++LS       +  G  I HS   K  +   +   + ++D+  + G
Sbjct: 728 SQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAG 784


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 153/484 (31%), Positives = 255/484 (52%), Gaps = 49/484 (10%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL 95
            NV   TA++G Y + N ++DA K+F E+P  +VVSWN++I GY Q+G+   A+ LF ++
Sbjct: 128 KNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKM 187

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
                                                   ER VV  N ++ M  +CG +
Sbjct: 188 P---------------------------------------ERNVVSWNTVMSMLAQCGRI 208

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFG 215
           E+A  +F  M ++D+ISW ++IA     G L+ A     R+P  D  S+N +I G+ Q G
Sbjct: 209 EEARRLFDRMPERDVISWTAMIA-----GLLDEALDLFERMPERDLPSWNTMITGLIQNG 263

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD-VPMDEYTFSTML 274
           D+  A  + + MP  N  SW +++TG V      EAL +F  M S +    ++ TF ++L
Sbjct: 264 DLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVL 323

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS--LCRKN 332
              + L+ L  G  +H  + K     S  V SAL++MYSKCG++  A  MF      +++
Sbjct: 324 GACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRD 383

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           LV+WN +I  YA +G   + I  F++++     +PD VT++ +L+ACSH  +  ++  +Y
Sbjct: 384 LVSWNGIIAAYAHHGYGKEAINFFKEMRK-SGFKPDDVTYVGLLSACSHAGL-VEEGLKY 441

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
           F+ + KD  I    +H   ++ L G+ G +  A   I  L       VW ALL+     +
Sbjct: 442 FDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHA 501

Query: 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           ++ + + +A +++++E ++   Y++L N+Y S G W  A+ +R  M+++GL+K+ GCSWI
Sbjct: 502 NVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWI 561

Query: 513 EVEN 516
           EV N
Sbjct: 562 EVGN 565



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 135/281 (48%), Gaps = 45/281 (16%)

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF 192
           ++++  V   N +I    K G + +A  +F EM + D+I+W +VI+   + G +E A   
Sbjct: 61  FTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRL 120

Query: 193 LHR--------------------------------LPNPDTISYNEVINGIAQFGDIEDA 220
             R                                +PN + +S+N +I+G AQ G I+ A
Sbjct: 121 FDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSA 180

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
           + +   MP  N  SWN++++      R+ EA  LF  M  +DV     +++ M++G+   
Sbjct: 181 MYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDV----ISWTAMIAGL--- 233

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
             L   + +   + ++ L +   + + L+    + G +  A  +F  + +KN+++W  MI
Sbjct: 234 --LDEALDLFERMPERDLPSWNTMITGLI----QNGDLRRARKLFNEMPKKNVISWTTMI 287

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           TG  + G+  + +++F ++ +    +P+  TF++VL ACS+
Sbjct: 288 TGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSN 328



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 99/196 (50%), Gaps = 10/196 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+     +L A S+L      QQ+H  I K+ +  + FV +AL+  Y K   L  A KM
Sbjct: 314 PNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKM 373

Query: 61  FVE--IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           F +    Q  +VSWN +I+ Y   G  ++A+N F E+ +S    D  ++   L+AC   G
Sbjct: 374 FDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAG 433

Query: 119 SLQLGMAIHSKIVKYSLERGVVIAN----CLIDMYGKCGSVEDAIGVFGEMIDKDIIS-W 173
            ++ G+    ++VK   +R +++      CL+D+ G+ G +++A G    +  K     W
Sbjct: 434 LVEEGLKYFDELVK---DRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVW 490

Query: 174 NSVIAASARNGNLELA 189
            +++A    + N+++ 
Sbjct: 491 GALLAGCNVHANVKIG 506



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 140/325 (43%), Gaps = 57/325 (17%)

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
           N +I  +++ G I +A  +   M  P+  +W ++++GY+    + EA  LF  + +K   
Sbjct: 71  NWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKK-- 128

Query: 265 MDEYTFSTMLSG----------------IAGLSALTWGMLIHSCVIKQGLDAS------- 301
            +  T++ M+ G                +   + ++W  +I        +D++       
Sbjct: 129 -NVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKM 187

Query: 302 ----IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
               +V  + ++ M ++CG++E A  +F  +  +++++W AMI G      L + ++LFE
Sbjct: 188 PERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGL-----LDEALDLFE 242

Query: 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417
           ++   RDL P   T +  L    + D+   +  + F  M K   I  T     +MI    
Sbjct: 243 RMPE-RDL-PSWNTMITGL--IQNGDL--RRARKLFNEMPKKNVISWT-----TMITGCV 291

Query: 418 QKGEVWRAQRMI-RELGFGSYGVVWRALLSASGACSDL-------DVARISAAEVIKLEG 469
           Q+GE   A ++  R L            +S  GACS+L        V +I +  V +   
Sbjct: 292 QEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQ--- 348

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVM 494
           DS +V   L N+Y+  G    A  M
Sbjct: 349 DSTFVVSALINMYSKCGELGTARKM 373


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 172/558 (30%), Positives = 277/558 (49%), Gaps = 47/558 (8%)

Query: 2   NEY--VLFHL-LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           NEY  V+F + L+A S+L      ++LHC I+K G   + FV T L+  Y K   + D+ 
Sbjct: 134 NEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGS-PDSFVLTGLVDMYAKCREVEDSR 192

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           ++F EI   +VV W S+I GYVQ+   ++ L LF  +    +  + Y+  S + AC +LG
Sbjct: 193 RVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLG 252

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           +L  G  +H  ++K   +    +   L+D+Y KCG + DA  VF E+   D++SW ++I 
Sbjct: 253 ALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIV 312

Query: 179 ASARNGNLELAFGFL--HRLPN--PDTISYNEVINGIAQFGD------------------ 216
             A+ G    A       R  +  P+T++ + V++  AQ G                   
Sbjct: 313 GYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSED 372

Query: 217 ----------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                           I DA  +  ++   +  +WNSI++GY       EAL LF +M+S
Sbjct: 373 ATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRS 432

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVE 319
             V  D  T  ++LS  A + A   G  +H   IK G L  S+ V +ALL+ Y+KCG  E
Sbjct: 433 DSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAE 492

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVLAA 378
            A  +F  +  KN +TW+AMI GY   GD ++ +ELF + LK    L+P+ V F  +L+A
Sbjct: 493 SARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLK--EKLEPNEVIFTTILSA 550

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH+ +   +   YF +M + Y   P+++H   M+ L+ + G +  A   I ++      
Sbjct: 551 CSHSGM-LGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDV 609

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
            +  A L      S  D+  ++   +++L  D    YV++ NLY S G W  A+ +   M
Sbjct: 610 SLLGAFLHGCRLHSRFDLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVMELM 669

Query: 499 RERGLRKEAGCSWIEVEN 516
           ++RGL K  G S +++E 
Sbjct: 670 KQRGLAKLPGWSLVDIET 687



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 146/313 (46%), Gaps = 43/313 (13%)

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
           S L  C  + SL+    IH+ +V + L   ++    L+ +YG  G VE A  +F  + + 
Sbjct: 44  SLLGICKTVSSLR---KIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNP 100

Query: 169 DIISWNSVIAASARNGNLELAFGF-----------------------------------L 193
           D+ SW  +I     N +      F                                   L
Sbjct: 101 DLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKL 160

Query: 194 H----RLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
           H    ++ +PD+     +++  A+  ++ED+  +   +   N   W S++ GYV  + + 
Sbjct: 161 HCQIVKVGSPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLK 220

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
           E L LF  M+   V  ++YT  ++++    L AL  G  +H  VIK G D +  + + LL
Sbjct: 221 EGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLL 280

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
           D+Y KCG +  A S+F  L   +LV+W AMI GYA+ G   + ++LF   +  +DL P++
Sbjct: 281 DLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTD-ERWKDLLPNT 339

Query: 370 VTFLNVLAACSHT 382
           VT  +VL+AC+ T
Sbjct: 340 VTTSSVLSACAQT 352



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 85/161 (52%), Gaps = 2/161 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHK 59
           P+   L  +L A + +G       LH Y +K+G LS +V+V TAL+ FY K      A  
Sbjct: 437 PDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARV 496

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F E+ + + ++W+++I GY   G   ++L LF ++ + ++  +   FT+ L+AC   G 
Sbjct: 497 IFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGM 556

Query: 120 LQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAI 159
           L  G    + + + Y+    +    C++D+  + G +E+A+
Sbjct: 557 LGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEAL 597


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 161/554 (29%), Positives = 283/554 (51%), Gaps = 41/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +    +L A +D        Q+H  I+K+GF    FV  AL+  Y K   + DA  +
Sbjct: 203 PNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAV 262

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     V+WN +I GY   G Y +   +F  +  + +      F +AL  C Q   L
Sbjct: 263 FDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQREL 322

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID--KDIISWNSVIA 178
                +H  +VK   E    I   L+  Y KC SV++A  +F  M D   ++++W ++I 
Sbjct: 323 NFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFS-MADAAHNVVTWTAMIG 381

Query: 179 ASARNGNLELAFGFLHRLPN----PDTISYNEVING-----IAQF--------------- 214
              +N N + A     ++      P+  +Y+ V+ G     ++Q                
Sbjct: 382 GFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSV 441

Query: 215 -----------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
                      G++ ++  +  S+P+ +  +W+++LTG        +A+ +F ++  + V
Sbjct: 442 ATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGV 501

Query: 264 PMDEYTFSTMLSGIAGLSA-LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
             +EYTFS++++  +  +A +  G  IH+  +K G   ++ V+SALL MYSK G +E A+
Sbjct: 502 KPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAE 561

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F     +++V+WN+MITGY ++GD  K +E+F+ ++  + L  D VTF+ VL AC+H 
Sbjct: 562 KVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQN-QGLPLDDVTFIGVLTACTHA 620

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  ++  +YF  M KDY I    EH   M+ L  + G   +A  +I  + F +   +WR
Sbjct: 621 GL-VEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWR 679

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
            LL+A     +L++ +++A +++ L+ +    YV+L N++   GNW+  + +R  M ER 
Sbjct: 680 TLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERK 739

Query: 503 LRKEAGCSWIEVEN 516
           ++KEAGCSWIE++N
Sbjct: 740 VKKEAGCSWIEIKN 753



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 132/475 (27%), Positives = 226/475 (47%), Gaps = 59/475 (12%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+HC  LKSGFL +V V T+L+  Y K     D   +F E+   +VVSW SL+SGY ++
Sbjct: 124 RQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARN 183

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   + ++L  +++   +  + ++F + L A      ++ G+ +H+ IVK   E    + 
Sbjct: 184 GLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVC 243

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------ 196
           N LI MY K   V DA  VF  M+ +D ++WN +I   A  G     F   HR+      
Sbjct: 244 NALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVK 303

Query: 197 -------------PNPDTISYNE------VINGIAQFGDIEDAIMILSSMPSP------- 230
                             +++ +      V NG     DI  A+M+  S  S        
Sbjct: 304 LSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKL 363

Query: 231 --------NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
                   N  +W +++ G+V  N   +A+ LF +M  + V  + +T+ST+L+G    S 
Sbjct: 364 FSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPS-SL 422

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L+    +H+ +IK   +    VA+ALLD Y K G V  +  +F S+  K++V W+AM+TG
Sbjct: 423 LSQ---LHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTG 479

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
            A+  D  K +E+F QL     ++P+  TF +V+ ACS +    +   +   +  K  G 
Sbjct: 480 LAQTRDSEKAMEVFIQL-VKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKS-GK 537

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMI-----REL--------GFGSYGVVWRAL 444
              +    +++ +  +KG +  A+++      R++        G+G +G   +AL
Sbjct: 538 SNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKAL 592



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 119/471 (25%), Positives = 210/471 (44%), Gaps = 53/471 (11%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           AH++F E P   +  +N L+  + ++   R+AL+LF +L  S +  D  + + AL  CG 
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           L    +G  +H + +K      V +   L+DMY K    ED  G+F EM  K+++SW S+
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 177 IAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIE-------------- 218
           ++  ARNG  +     ++++     NP+  ++  V+  +A    IE              
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 219 ---------------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
                                DA  +  SM   +S +WN ++ GY       E   +F  
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M+   V +    F T L   +    L +   +H  V+K G + +  + +AL+  YSKC  
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSS 356

Query: 318 VEIADSMFR-SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           V+ A  +F  +    N+VTW AMI G+ +N +  K ++LF Q+ +   ++P+  T+  VL
Sbjct: 357 VDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQM-SREGVRPNHFTYSTVL 415

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIK-PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           A       P   +S+    + K Y  K P+V    +++    + G V  + R+   +   
Sbjct: 416 AG-----KPSSLLSQLHAQIIKAYYEKVPSV--ATALLDAYVKTGNVVESARVFYSIPAK 468

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEG--DSDYVYVMLCNLYTS 484
              V W A+L+      D + A     +++K EG   ++Y +  + N  +S
Sbjct: 469 DI-VAWSAMLTGLAQTRDSEKAMEVFIQLVK-EGVKPNEYTFSSVINACSS 517



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 1/202 (0%)

Query: 183 NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGY 242
           NG L+ +   +    +P    Y++ +  I+       A  +    P  + S +N +L  +
Sbjct: 20  NGRLQSSIHHIKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDF 79

Query: 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
              N   EALHLF ++ S  + +D  T S  L     L     G  +H   +K G    +
Sbjct: 80  SRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDV 139

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
            V ++L+DMY K    E    +F  +  KN+V+W ++++GYARNG   +VI L  Q++ +
Sbjct: 140 SVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQ-M 198

Query: 363 RDLQPDSVTFLNVLAACSHTDI 384
             + P+  TF  VL A +   I
Sbjct: 199 EGVNPNGFTFATVLGALADESI 220


>gi|347954462|gb|AEP33731.1| chlororespiratory reduction 21, partial [Crucihimalaya wallichii]
          Length = 830

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 156/526 (29%), Positives = 289/526 (54%), Gaps = 15/526 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +   L AS+++G     +Q H   + +G   +  + T+L+ FY K+  +  A  +
Sbjct: 272 PSRVTVSTCLSASANMGGVAEGKQSHAIAILNGLELDNILGTSLLNFYCKVGLIEYAEMI 331

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VV+WN LISGYVQ G    A+ +   +    +  D  + ++ ++A  +  +L
Sbjct: 332 FDRMFDKDVVTWNLLISGYVQQGLVEDAIYMCQLMRLENLKYDCVTLSTLMSAAARTKNL 391

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +    +++SLE  +V+A+  +DMY KCGS+ DA  VF   ++KD+I WN+++AA 
Sbjct: 392 KFGKEVQCYCIRHSLESDIVLASITMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAY 451

Query: 181 ARNG----NLELAFGF-LHRLPNPDTISYNEVINGIAQFGDIEDA----IMILSSMPSPN 231
           A +G     L L +   L  +P P+ I++N +I  + + G++ +A    + + SS  SPN
Sbjct: 452 AESGLSGEALRLFYEMQLESVP-PNVITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPN 510

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SW +++ G V      EA+    +MQ   +  + ++ +  LS  A L++L +G  IH 
Sbjct: 511 LISWTTMMNGMVQNGCSEEAILFLRKMQDSGLRPNAFSITVALSASANLASLHFGRSIHG 570

Query: 292 CVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
            +++     +S+ + ++L+DMY+KCG +  A+ +F S     L  +NAMI+ YA  G++ 
Sbjct: 571 YIVRNLQHSSSVSIETSLVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVK 630

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHT-DIPFDKVSEYFESMTKDYGIKPTVEHC 409
           + I L+  L+ + + +PD++TF ++L+AC+H  DI  ++  E F  M   +G+KP +EH 
Sbjct: 631 EAITLYRSLEDMGN-KPDNITFTSLLSACNHVGDI--NQAIEIFTDMVSKHGVKPCLEHY 687

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469
             M+ L+   GE  RA ++I E+ +     + ++L+++       ++    +  +++ E 
Sbjct: 688 GLMVDLLASAGETDRALKLIEEMPYKPDARMIQSLVASCNKQHKSELVEYFSRHLLESEP 747

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           ++   YV + N Y   G+WD    MR+ M+ +GL K  GCSWI+++
Sbjct: 748 ENSGNYVTISNAYAVEGSWDEVVKMRDMMKAKGLTKNPGCSWIQIK 793



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/481 (27%), Positives = 235/481 (48%), Gaps = 49/481 (10%)

Query: 23  QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H  ILK+G  +  N ++ T L+ FY K ++L  A  +F ++   +V SW ++I    
Sbjct: 90  KQIHARILKNGDFYAGNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKC 149

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + G    AL  FVE+  +EI+ D +   +   ACG L   + G  +H  +VK  LE  V 
Sbjct: 150 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVF 209

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
           +A+ L DMYGKCG ++DA  VF E+ ++++++WN+++    +NG  E A   L  +    
Sbjct: 210 VASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALLVGYVQNGMNEEAIRLLSDMRKDG 269

Query: 197 --PNPDTISY---------------------------------NEVINGIAQFGDIEDAI 221
             P+  T+S                                    ++N   + G IE A 
Sbjct: 270 VEPSRVTVSTCLSASANMGGVAEGKQSHAIAILNGLELDNILGTSLLNFYCKVGLIEYAE 329

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           MI   M   +  +WN +++GYV +  V +A+++   M+ +++  D  T ST++S  A   
Sbjct: 330 MIFDRMFDKDVVTWNLLISGYVQQGLVEDAIYMCQLMRLENLKYDCVTLSTLMSAAARTK 389

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L +G  +    I+  L++ IV+AS  +DMY+KCG +  A  +F S   K+L+ WN ++ 
Sbjct: 390 NLKFGKEVQCYCIRHSLESDIVLASITMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLA 449

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTF-LNVLAACSHTDIPFDKVSEYFESMTKDY 400
            YA +G   + + LF +++ +  + P+ +T+ L +L+   + ++  ++  E F  M +  
Sbjct: 450 AYAESGLSGEALRLFYEMQ-LESVPPNVITWNLIILSLLRNGEV--NEAKEMFLQM-QSS 505

Query: 401 GIKPTVEHCCSMIRLMGQKG---EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
           GI P +    +M+  M Q G   E     R +++ G           LSAS   + L   
Sbjct: 506 GISPNLISWTTMMNGMVQNGCSEEAILFLRKMQDSGLRPNAFSITVALSASANLASLHFG 565

Query: 458 R 458
           R
Sbjct: 566 R 566



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 214/481 (44%), Gaps = 89/481 (18%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +V+ ++ +A   L W  + + +H Y++K+G    VFV+++L   Y K   L DA K+
Sbjct: 171 PDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKV 230

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EIP+ +VV+WN+L+ GYVQ+G   +A+ L  ++ +  +     + ++ L+A   +G +
Sbjct: 231 FDEIPERNVVAWNALLVGYVQNGMNEEAIRLLSDMRKDGVEPSRVTVSTCLSASANMGGV 290

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN------ 174
             G   H+  +   LE   ++   L++ Y K G +E A  +F  M DKD+++WN      
Sbjct: 291 AEGKQSHAIAILNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFDKDVVTWNLLISGY 350

Query: 175 -----------------------------SVIAASARNGNLELA-----FGFLHRLPNPD 200
                                        ++++A+AR  NL+       +   H L + D
Sbjct: 351 VQQGLVEDAIYMCQLMRLENLKYDCVTLSTLMSAAARTKNLKFGKEVQCYCIRHSLES-D 409

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +  +  ++  A+ G I DA  +  S    +   WN++L  Y       EAL LF EMQ 
Sbjct: 410 IVLASITMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYEMQL 469

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           + VP +                +TW ++I S +                    + G+V  
Sbjct: 470 ESVPPN---------------VITWNLIILSLL--------------------RNGEVNE 494

Query: 321 ADSMFRSL----CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           A  MF  +       NL++W  M+ G  +NG   + I    +++    L+P++ +    L
Sbjct: 495 AKEMFLQMQSSGISPNLISWTTMMNGMVQNGCSEEAILFLRKMQD-SGLRPNAFSITVAL 553

Query: 377 AACSH-TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           +A ++   + F +    +      +    ++E   S++ +  + G++ +A+R+     FG
Sbjct: 554 SASANLASLHFGRSIHGYIVRNLQHSSSVSIE--TSLVDMYAKCGDINKAERV-----FG 606

Query: 436 S 436
           S
Sbjct: 607 S 607



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 22/227 (9%)

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
           +P+S+S+   ++       + EAL L  +M  +++ +    +  +L G      L  G  
Sbjct: 32  NPSSTSYFHRVSSLCKNGEIKEALSLVTKMDFRNLRIGPEIYGEILQGCVYERDLCTGKQ 91

Query: 289 IHSCVIKQG--LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR- 345
           IH+ ++K G     +  + + L+  Y+KC  +EIA  +F  L  +N+ +W A+I    R 
Sbjct: 92  IHARILKNGDFYAGNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRI 151

Query: 346 ---NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
               G L   +E+ E      ++ PD+    NV  AC             F      Y +
Sbjct: 152 GLCEGALMGFVEMLEN-----EIFPDNFVVPNVCKACGALQW------SRFGRGVHGYVV 200

Query: 403 KPTVEHCC----SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
           K  +E C     S+  + G+ G +  A+++  E+   +  V W ALL
Sbjct: 201 KAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV-VAWNALL 246


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 169/561 (30%), Positives = 291/561 (51%), Gaps = 51/561 (9%)

Query: 1   PNEYVLFHLLRA---SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
           P+++    +++A   SSD+G     +QLH  ++K    S++    AL+  Y + N ++DA
Sbjct: 166 PDQFAFGSIIKACASSSDVGLG---KQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDA 222

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE-LERSEIYADAYSFTSALAACGQ 116
            ++F  IP   ++SW+S+I+G+ Q G   +AL+   E L     + + Y F S+L AC  
Sbjct: 223 SRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSS 282

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANC-LIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175
           L     G  IH   +K  L  G  IA C L DMY +CG +  A  VF ++   D  SWN 
Sbjct: 283 LLRPDYGSQIHGLCIKSELA-GNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNV 341

Query: 176 VIAASARNGNLELAFGFLHRLPN----PDTISYNEVING----------------IAQFG 215
           +IA  A NG  + A     ++ +    PD IS   ++                  I ++G
Sbjct: 342 IIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWG 401

Query: 216 DIEDAIMILSSMP--------------------SPNSSSWNSILTGYVNRNRVPEALHLF 255
            + D  +  S +                     + +S SWN+ILT  +   +  E L LF
Sbjct: 402 FLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLF 461

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
             M   +   D  T   +L G   +S+L  G  +H   +K GL     + + L+DMY+KC
Sbjct: 462 KLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKC 521

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G +  A  +F S+  +++V+W+ +I GYA++G   + + LF+++K+   ++P+ VTF+ V
Sbjct: 522 GSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSA-GIEPNHVTFVGV 580

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L ACSH  +  + +  Y  +M  ++GI PT EHC  ++ L+ + G +  A+R I E+   
Sbjct: 581 LTACSHVGLVEEGLKLY-ATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLE 639

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
              VVW+ LLSA     ++ +A+ +A  ++K++  +   +V+LC+++ S GNW+ A+++R
Sbjct: 640 PDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLR 699

Query: 496 NFMRERGLRKEAGCSWIEVEN 516
           + M++  ++K  G SWIE+E+
Sbjct: 700 SSMKKHDVKKIPGQSWIEIED 720



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 220/452 (48%), Gaps = 52/452 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H +IL S    +  ++  ++  Y K  SL DA ++F  +P+ ++VS+ S+I+GY Q+
Sbjct: 87  RKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQN 146

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+  +A+ L++++ + ++  D ++F S + AC     + LG  +H++++K      ++  
Sbjct: 147 GQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQ 206

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-------NLE--LAFGFL 193
           N LI MY +   + DA  VF  +  KD+ISW+S+IA  ++ G       +L+  L+FG  
Sbjct: 207 NALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVF 266

Query: 194 H--------------RLPNPDTISYNEVINGI--------------------AQFGDIED 219
           H               L  PD   Y   I+G+                    A+ G +  
Sbjct: 267 HPNEYIFGSSLKACSSLLRPD---YGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNS 323

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
           A  +   +  P+++SWN I+ G  N     EA+ +F +M+S     D  +  ++L     
Sbjct: 324 ARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTK 383

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL--VTWN 337
             AL+ GM IHS +IK G  A + V ++LL MY+ C  +    ++F    R N   V+WN
Sbjct: 384 PMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDF-RNNADSVSWN 442

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397
            ++T   ++    +++ LF +L  V + +PD +T  N+L  C   +I   K+       +
Sbjct: 443 TILTACLQHEQPVEMLRLF-KLMLVSECEPDHITMGNLLRGC--VEISSLKLGSQVHCYS 499

Query: 398 KDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429
              G+ P       +I +  + G + +A+R+ 
Sbjct: 500 LKTGLAPEQFIKNGLIDMYAKCGSLGQARRIF 531



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 176/416 (42%), Gaps = 44/416 (10%)

Query: 73  NSLISGYVQSGKYRKALNLF-VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIV 131
           N  I+   +S  YR+AL  F    + S       ++ S + AC    SL  G  IH  I+
Sbjct: 35  NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHIL 94

Query: 132 KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LE 187
             + +   ++ N ++ MYGKCGS+ DA  VF  M +++++S+ SVI   ++NG     + 
Sbjct: 95  NSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIR 154

Query: 188 LAFGFLHRLPNPDTISYNEVINGIA----------------------------------- 212
           L    L     PD  ++  +I   A                                   
Sbjct: 155 LYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYV 214

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV-PMDEYTFS 271
           +F  + DA  +   +P  +  SW+SI+ G+       EAL    EM S  V   +EY F 
Sbjct: 215 RFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFG 274

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
           + L   + L    +G  IH   IK  L  + +   +L DMY++CG +  A  +F  + R 
Sbjct: 275 SSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERP 334

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE 391
           +  +WN +I G A NG   + + +F Q+++     PD+++  ++L  C+ T         
Sbjct: 335 DTASWNVIIAGLANNGYADEAVSVFSQMRS-SGFIPDAISLRSLL--CAQTKPMALSQGM 391

Query: 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
              S    +G    +  C S++ +     +++    +  +    +  V W  +L+A
Sbjct: 392 QIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTA 447


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 150/481 (31%), Positives = 255/481 (53%), Gaps = 33/481 (6%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           N+  S +++    K+  + +A K+F E+ +  +VSW++LISGY Q+G Y +AL +F+E+ 
Sbjct: 237 NIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMN 296

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
            + +  D     S L+AC  L  ++ G  IH  +++  +E  V + N LI MY   G + 
Sbjct: 297 ANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIM 356

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           DA  +F                    NG+            N D IS+N +I+G  + G 
Sbjct: 357 DAQKLF--------------------NGS-----------HNLDQISWNSMISGCMKCGS 385

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           +E A  +   MP  +  SW+++++GY   +   E L LF EMQ   +  DE    +++S 
Sbjct: 386 VEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISA 445

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
              L+AL  G  +H+ + K GL  ++++ + LLDMY KCG VE A  +F  +  K + +W
Sbjct: 446 CTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSW 505

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           NA+I G A NG + + +++F ++K    + P+ +TF+ VL AC H  +  D+   +F SM
Sbjct: 506 NALIIGLAVNGLVERSLDMFSEMKN-NGVIPNEITFMGVLGACRHMGL-VDEGRCHFASM 563

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
            + +GI+P V+H   M+ L+G+ G +  A+++I  +        W ALL A     D ++
Sbjct: 564 IEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEM 623

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
                 ++I+L+ D D  +V+L N++ S G+W+    +R  M+++G+ K  GCS IE   
Sbjct: 624 GERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANG 683

Query: 517 V 517
           V
Sbjct: 684 V 684



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 199/383 (51%), Gaps = 34/383 (8%)

Query: 32  SGFLSNVFVSTALMGFYR--KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKAL 89
           +GF+S+ F ++ L+ F        L  + ++F  I   +   WN+++  Y+QS    KAL
Sbjct: 67  TGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKAL 126

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
            L+  + ++ +  D Y++   + AC        G  IH  ++K   +  V + N LI+MY
Sbjct: 127 LLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMY 186

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVIN 209
             CG++ DA  +F E    D +SWNS++A   + G++E A     ++P  + ++ N +I 
Sbjct: 187 AVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIV 246

Query: 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
            + + G + +A  + + M   +  SW+++++GY       EAL +F EM +  + +DE  
Sbjct: 247 LLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVV 306

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS---------------- 313
             ++LS  A LS +  G +IH  VI+ G+++ + + +AL+ MYS                
Sbjct: 307 VVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSH 366

Query: 314 ---------------KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
                          KCG VE A ++F  +  K++V+W+A+I+GYA++   ++ + LF +
Sbjct: 367 NLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHE 426

Query: 359 LKTVRDLQPDSVTFLNVLAACSH 381
           ++ +  ++PD    ++V++AC+H
Sbjct: 427 MQ-LGQIRPDETILVSVISACTH 448



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 118/261 (45%), Gaps = 35/261 (13%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +E V+  +L A + L      + +H  +++ G  S V +  AL+  Y     + DA K+F
Sbjct: 303 DEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLF 362

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKA-------------------------------LN 90
                   +SWNS+ISG ++ G   KA                               L 
Sbjct: 363 NGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLA 422

Query: 91  LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
           LF E++  +I  D     S ++AC  L +L  G  +H+ I K  L+  V++   L+DMY 
Sbjct: 423 LFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYM 482

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNE 206
           KCG VE+A+ VF  M +K + SWN++I   A NG +E +      + N    P+ I++  
Sbjct: 483 KCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMG 542

Query: 207 VINGIAQFGDIEDAIMILSSM 227
           V+      G +++     +SM
Sbjct: 543 VLGACRHMGLVDEGRCHFASM 563



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 118/232 (50%), Gaps = 5/232 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E +L  ++ A + L      + +H YI K+G   NV + T L+  Y K   + +A ++
Sbjct: 434 PDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEV 493

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  V SWN+LI G   +G   ++L++F E++ + +  +  +F   L AC  +G +
Sbjct: 494 FNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLV 553

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G     S I K+ +E  V    C++D+ G+ G + +A  +   M +  D+ +W +++ 
Sbjct: 554 DEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLG 613

Query: 179 ASARNGNLELAFGFLHRLP--NPDTISYNEVINGI-AQFGDIEDAIMILSSM 227
           A  ++G+ E+      +L    PD   ++ +++ I A  GD ED + +   M
Sbjct: 614 ACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMM 665


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 173/542 (31%), Positives = 279/542 (51%), Gaps = 52/542 (9%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS--VVSWNSLISG 78
           +  Q+H  ++ +  LS  F+   L+  Y K  S+     +F   P  S  VVSW SLI+ 
Sbjct: 45  HATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSAPDDSKNVVSWTSLITQ 104

Query: 79  YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
             +  +  KAL  F  + RS +Y + Y+F++ L+AC    +   G  +HS + K+     
Sbjct: 105 LTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAE 164

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF-----L 193
           V + + L+DMY KC  +  A  VF EM  ++++SWN++I    +N   + A  F     L
Sbjct: 165 VFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLL 224

Query: 194 HRLPNPDTISYNEVINGIAQFGDIE----------------------------------- 218
             L   D +S++ V +  A  G++E                                   
Sbjct: 225 ENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFN 284

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
           D   + S+  + +  +WN ++  YV  +   +A + F  M+ K    DE ++S++L   A
Sbjct: 285 DVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCA 344

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            L+AL  G LIH+ +I+ G   ++ VAS+L+ MY+KCG +  A  +F     +N+V W A
Sbjct: 345 NLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTA 404

Query: 339 MITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACSHTDIPFDKVSE---YFE 394
           +I    ++G    V+ELFEQ+  +R+ ++PD +TF++VL+ACSHT     +V E   YF 
Sbjct: 405 IIAACQQHGHANWVVELFEQM--LREGIKPDYITFVSVLSACSHTG----RVEEGFFYFN 458

Query: 395 SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDL 454
           SM K +GI P  EH   ++ L+ + GE+ RA+R I  +       VW ALLSA    S+L
Sbjct: 459 SMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNL 518

Query: 455 DVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
            + +  A ++  LE D+   YV+LCN+ T +G  + A  +R  M   G+RKE GCSWI++
Sbjct: 519 IMGKEVALKLFDLEPDNPGNYVLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDI 578

Query: 515 EN 516
           +N
Sbjct: 579 KN 580



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 195/399 (48%), Gaps = 23/399 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y    +L A +D     + +Q+H  + K GFL+ VFV +AL+  Y K   +  A K+
Sbjct: 128 PNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKV 187

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA-DAYSFTSALAACGQLGS 119
           F E+P  ++VSWN++I G++Q+  Y +A+  F  L    + A D  SF+S  +AC   G+
Sbjct: 188 FEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGN 247

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+ G  +H   +K  +   V I N L DMYGKCG   D   +F     +D+++WN +I A
Sbjct: 248 LEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMA 307

Query: 180 SARNGNLELA---FGFLHRLPN-PDTISYNEVINGIAQFGDIEDAIM----ILSSMPSPN 231
              N N E A   F  + R  + PD  SY+ V++  A    +    +    I+ S    N
Sbjct: 308 YVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKN 367

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
               +S++T Y     + +A  +F E + ++V      ++ +++         W + +  
Sbjct: 368 LRVASSLITMYAKCGSLVDAFQIFEETEDRNV----VCWTAIIAACQQHGHANWVVELFE 423

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV-----TWNAMITGYARN 346
            ++++G+    +   ++L   S  G+VE     F S+ + + +      +  ++   +R 
Sbjct: 424 QMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRA 483

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC-SHTDI 384
           G+L +     E +     ++PD+  +  +L+AC +H+++
Sbjct: 484 GELDRAKRFIELMP----IKPDASVWGALLSACRNHSNL 518


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 163/536 (30%), Positives = 270/536 (50%), Gaps = 43/536 (8%)

Query: 23  QQLHCYILKSGFL-SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           QQLH +++    L +N +++T L  FY     ++ A  +F  I   +   WN +I GY  
Sbjct: 79  QQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYAS 138

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           +G   K+L L+ E+      AD +++   L ACG L  +++G  +HS++V   LE  + +
Sbjct: 139 NGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYV 198

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF----------- 190
            N L+ MY K G +  A  VF  M ++D+ SWN++I+  A+N +   AF           
Sbjct: 199 GNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGL 258

Query: 191 --------GFLHRLPNPDTISYNEVINGIAQFGDIE---------------------DAI 221
                   G L    +   +   +VI+G A    I                      DA 
Sbjct: 259 FADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDAR 318

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   +   ++ SWNS++ GY       E+L LF  M       D+ TF  +L     ++
Sbjct: 319 RLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIA 378

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL +GM IHS ++K+G DA+ +V +AL+DMYSKCG +  +  +F  +  K+LV+W+AM+ 
Sbjct: 379 ALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVA 438

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GY  +G   + I + + +K    + PD+  F ++L+ACSH  +  +   E F  M K+Y 
Sbjct: 439 GYGLHGRGREAISILDGMKA-NSVIPDNGVFTSILSACSHAGLVVEG-KEIFYKMEKEYN 496

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           +KP + H   M+ L+G+ G +  A  +IR +       +W ALL+AS    ++ +A ISA
Sbjct: 497 VKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISA 556

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
            +V  +       Y+ L N+Y +   WD    +R  +R +GL+K  GCS+IE++N+
Sbjct: 557 QKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNM 612



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 105/450 (23%), Positives = 197/450 (43%), Gaps = 50/450 (11%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           +L+A  DL      +++H  ++  G  S+++V  +L+  Y K   +  A  +F  + +  
Sbjct: 167 VLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERD 226

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           + SWN++ISGY ++     A  +F  + ++ ++AD  +    L+AC  L +++ G  IH 
Sbjct: 227 LTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHG 286

Query: 129 KIVKYSL-ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
             V+ S+        N LI+MY  C  + DA  +F  +  KD +SWNS+I   ARNG+  
Sbjct: 287 YAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAF 346

Query: 188 LAFGFLHRLP----NPDTISYNEVINGIAQF----------------------------- 214
            +     R+      PD +++  V+    Q                              
Sbjct: 347 ESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALV 406

Query: 215 ------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268
                 G +  +  +   MP  +  SW++++ GY    R  EA+ +   M++  V  D  
Sbjct: 407 DMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNG 466

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRS 327
            F+++LS  +    +  G  I   + K+  +  ++   S ++D+  + G ++ A  + R+
Sbjct: 467 VFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRT 526

Query: 328 L-CRKNLVTWNAMITGYARNGDLTKVIELFE-QLKTVRDLQPDSVTFLNVLAACSHTDIP 385
           +  +     W A++T       L K I+L E   + V D+ P  V+    L+     +  
Sbjct: 527 MEIKPTSDIWAALLTA----SRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKR 582

Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415
           +D V E   +M +  G+K +    CS I L
Sbjct: 583 WDDV-ERVRAMVRRKGLKKSPG--CSFIEL 609



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 109/193 (56%), Gaps = 6/193 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++     +L A   +    Y   +H Y++K GF +N  V TAL+  Y K  SLA + ++
Sbjct: 362 PDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRV 421

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P  S+VSW+++++GY   G+ R+A+++   ++ + +  D   FTS L+AC   G +
Sbjct: 422 FDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLV 481

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK---DIISWNSV 176
             G  I  K+ K Y+++  +   +C++D+ G+ G +++A  +   M  K   DI  W ++
Sbjct: 482 VEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDI--WAAL 539

Query: 177 IAASARNGNLELA 189
           + AS  + N++LA
Sbjct: 540 LTASRLHKNIKLA 552


>gi|226531396|ref|NP_001147435.1| methyltransferase small domain [Zea mays]
 gi|195611352|gb|ACG27506.1| methyltransferase small domain [Zea mays]
          Length = 601

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 162/512 (31%), Positives = 268/512 (52%), Gaps = 38/512 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++     LLR+   L   +  +Q+H +++ SG  S V++  +L+  Y     +  A  M
Sbjct: 122 PDQQTFLALLRSVEHL---SAGRQVHAHVVVSGLHSRVYLRNSLIKMYIDAGDVETAELM 178

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F        VS N ++SGYV  G   KAL  F ++    I  D Y+  + L  CG+L + 
Sbjct: 179 FRSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVVDQYTAVALLTCCGRLKNE 238

Query: 121 QLGMAIHSKIVKY--SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            +G ++H  IV+   + + G+++ N L+DMY KCG +  A  +FGE  +KD ISW     
Sbjct: 239 LIGRSVHGVIVRRMDAGDHGLILVNALLDMYAKCGRMNAAKTIFGEAGEKDAISW----- 293

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
                                     N +++G    G ++ A    S  PS +  SWN++
Sbjct: 294 --------------------------NTMVSGFVNAGMLDLASRFFSEAPSRDLISWNAL 327

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           L GY       E + LF +M +  V +D+ T  T++S  AG  +L     +H  V+K+  
Sbjct: 328 LAGYARYKGFNEVMKLFHDMLASCVNLDKVTAVTLISAAAGKGSLNHAKSVHGWVVKEFG 387

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
                +ASAL+DMY KCG V+IA  +F     K++  W AMI+G A NG  T+ +ELF +
Sbjct: 388 HQDAFLASALVDMYCKCGNVKIAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFWK 447

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           ++T   + P+ VT L VL+ACSH+ +  D+  + F++M + Y I+P +EH   M+ L+ +
Sbjct: 448 MQT-EVVAPNGVTLLAVLSACSHSGL-LDEGCKIFDAMKQRYSIEPGIEHFGCMVDLLAR 505

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G +  A  + R +       +W ++L+AS A  +++VA I++ E+++L+   +  YV+L
Sbjct: 506 SGRLIDALALARRMQMRPSRSIWGSILNASLAGQNIEVAEIASKELLRLDPAEEGGYVLL 565

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEAGCS 510
            NL+ + G+W+ +  +R  M  +GLRK AG S
Sbjct: 566 SNLHAAGGHWNHSDKVRQNMERKGLRKLAGAS 597


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 160/519 (30%), Positives = 268/519 (51%), Gaps = 37/519 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++    L++A ++       + +H   +K+ F  +VFV  +L+ FY     L  A+ +
Sbjct: 238 PNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLV 297

Query: 61  F--VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           F  +E     +VSWNS+++G+VQ G   KAL+LF  +    ++ +A +  S ++AC +  
Sbjct: 298 FEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTM 357

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           +L LG  +   I +  +   + + N  IDM+ KCG VE                      
Sbjct: 358 NLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVE---------------------- 395

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
                    +A G    +   D +S+  +I+G A+  +   A  I  SMP  +  +WN +
Sbjct: 396 ---------IARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVL 446

Query: 239 LTGYVNRNRVPEALHLFGEMQ--SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           ++GY    R  EAL +F E+Q        D+ T  + LS  A L A+  G  IH  + K+
Sbjct: 447 ISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKE 506

Query: 297 GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
            +  +  +A++L+DMYSK G VE A  +F S+  K++  W+AMI G A +G     IELF
Sbjct: 507 RIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELF 566

Query: 357 EQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLM 416
             ++  + ++P+SVTF N+L ACSH+ +  D+    F+ M + YG+ P  +H   M+ ++
Sbjct: 567 LDMQETQ-VKPNSVTFTNLLCACSHSGL-VDEGKRLFDEMERVYGVVPKTKHYSCMVDVL 624

Query: 417 GQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476
           G+ G +  A + I  +       VW ALL A     +L++A  + + ++++E  +   YV
Sbjct: 625 GRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYV 684

Query: 477 MLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           +L NLY   G+W+  S +R  MR+ GL+KE GCS IE++
Sbjct: 685 LLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEID 723


>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 803

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 161/531 (30%), Positives = 280/531 (52%), Gaps = 39/531 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H  ++K  F+S+V+V  +L+  Y K+    DA K+F E+P+  +VSWNS+ISGY+  
Sbjct: 146 KKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIVSWNSMISGYLAL 205

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG-VVI 141
               ++L LF E+ +     D +S  SAL AC  + S  +G  +H   V+  +E G V++
Sbjct: 206 EDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHAVRSRIETGDVMV 265

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP---- 197
              ++DMY K G V  A  +F  +I ++I++WN +I   ARN  +  AF    ++     
Sbjct: 266 MTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDAFLCFQKMSEQNG 325

Query: 198 -NPDTISY-----------NEVINGIA--------------------QFGDIEDAIMILS 225
             PD I+               I+G A                    ++G ++ A +I  
Sbjct: 326 LQPDVITLINLLPACAILEGRTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFD 385

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
            +   N  SWNSI+  YV   +   AL LF ++    +  D  T +++L   A   +L+ 
Sbjct: 386 RIAEKNLISWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIASILPAYAESLSLSE 445

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  IH+ ++K    ++ ++ ++L+ MY+ CG +E A   F  +  K++V+WN++I  YA 
Sbjct: 446 GRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAYAV 505

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
           +G     + LF ++     + P+  TF ++LAACS + +  D+  EYFESM ++YGI P 
Sbjct: 506 HGFGRISVCLFSEM-IASKVDPNKSTFASLLAACSISGM-VDEGWEYFESMKREYGIDPG 563

Query: 406 VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465
           +EH   M+ L+G+ G    A+R IRE+ F     +W +LL+AS   +D+ VA  +A ++ 
Sbjct: 564 IEHYGYMLDLIGRTGNFSSAKRFIREMPFLPTARIWGSLLNASRNHNDITVAEFAAEQIF 623

Query: 466 KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           K+E D+   YV+L N+Y     W+  + ++  M  +G+ + +  S +E ++
Sbjct: 624 KMEHDNTGCYVLLLNMYAEARRWEDVNRIKLLMESKGISRTSSRSTVEAKS 674



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 186/385 (48%), Gaps = 47/385 (12%)

Query: 35  LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE 94
           L++  ++ AL GF      + DA ++F E+ +     WN +I G+   G Y +AL L+  
Sbjct: 58  LNDPALTRALRGFADS-GLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCR 116

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           +  S + AD++++   + +   + SL+ G  IH+ ++K      V + N LI +Y K G 
Sbjct: 117 MVFSGVKADSFTYPFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGC 176

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAA--SARNG-------NLELAFGF------------- 192
             DA  VF EM ++DI+SWNS+I+   +  +G          L FGF             
Sbjct: 177 SWDAEKVFEEMPERDIVSWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGA 236

Query: 193 ------------LH------RLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSS 234
                       LH      R+   D +    +++  +++G++  A  I   +   N  +
Sbjct: 237 CSHVYSPNMGKELHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFKCIIQRNIVA 296

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKD-VPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           WN ++  Y   +RV +A   F +M  ++ +  D  T   +L   A L     G  IH   
Sbjct: 297 WNVLIGCYARNSRVTDAFLCFQKMSEQNGLQPDVITLINLLPACAILE----GRTIHGYA 352

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
           +++G    IV+ +AL+DMY + GQ++ A+ +F  +  KNL++WN++I  Y +NG     +
Sbjct: 353 MRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQNGKNYSAL 412

Query: 354 ELFEQLKTVRDLQPDSVTFLNVLAA 378
           ELF++L     L PDS T  ++L A
Sbjct: 413 ELFQKLWD-SSLLPDSTTIASILPA 436



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 132/292 (45%), Gaps = 45/292 (15%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L +LL A + L   T    +H Y ++ GFL ++ + TAL+  Y +   L  A  +
Sbjct: 328 PDVITLINLLPACAILEGRT----IHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVI 383

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I + +++SWNS+I+ YVQ+GK   AL LF +L  S +  D+ +  S L A  +  SL
Sbjct: 384 FDRIAEKNLISWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIASILPAYAESLSL 443

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH+ IVK       +I N L+ MY  CG +EDA   F  ++ KD++SWNS+I A 
Sbjct: 444 SEGRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAY 503

Query: 181 ARNGNLELAFGFLHRL------PNPDTIS------------------------------- 203
           A +G   ++      +      PN  T +                               
Sbjct: 504 AVHGFGRISVCLFSEMIASKVDPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPG 563

Query: 204 ---YNEVINGIAQFGDIEDAIMILSSMPS-PNSSSWNSILTGYVNRNRVPEA 251
              Y  +++ I + G+   A   +  MP  P +  W S+L    N N +  A
Sbjct: 564 IEHYGYMLDLIGRTGNFSSAKRFIREMPFLPTARIWGSLLNASRNHNDITVA 615



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 117/231 (50%), Gaps = 18/231 (7%)

Query: 208 INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
           + G A  G +EDA+ +   M   ++  WN ++ G+ +     EAL L+  M    V  D 
Sbjct: 67  LRGFADSGLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVKADS 126

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
           +T+  ++  + G+S+L  G  IH+ VIK    + + V ++L+ +Y K G    A+ +F  
Sbjct: 127 FTYPFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEE 186

Query: 328 LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387
           +  +++V+WN+MI+GY    D  + + LF+++      +PD  + ++ L ACSH   P  
Sbjct: 187 MPERDIVSWNSMISGYLALEDGFRSLMLFKEMLKF-GFKPDRFSTMSALGACSHVYSP-- 243

Query: 388 KVSEYFESMTKD---YGIKPTVEH-----CCSMIRLMGQKGEVWRAQRMIR 430
                  +M K+   + ++  +E        S++ +  + GEV  A+R+ +
Sbjct: 244 -------NMGKELHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFK 287


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 158/560 (28%), Positives = 288/560 (51%), Gaps = 42/560 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL A + +G      QLH + +K+G  +++ +  +L+  Y K   +  AHK 
Sbjct: 360 PDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKF 419

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F+     ++V WN ++  Y Q      +  +F +++   +  + +++ S L  C  LG+L
Sbjct: 420 FLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGAL 479

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IH+ ++K   +  V + + LIDMY K G +  A+ +   + + D++SW ++IA  
Sbjct: 480 YLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGY 539

Query: 181 ARNGNLELAFGFL----HRLPNPDTISY-------------------------------- 204
            ++     A        +R    D I +                                
Sbjct: 540 VQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADL 599

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+  A+ G I++A +    +   N+ SWNS+++G        EAL +F  M   
Sbjct: 600 SINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRT 659

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           +  ++ +T+ + +S  A L+ +  G  IHS V+K G D+   V+++L+ +Y+K G +  A
Sbjct: 660 EAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDA 719

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F  +  +N+++WNAMITGY+++G   + + LFE++K V  + P+ VTF+ VL+ACSH
Sbjct: 720 WREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMK-VCGIMPNHVTFVGVLSACSH 778

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  + + +YFESM K + + P  EH   ++ L+G+ G++ RA   I+E+   +  ++W
Sbjct: 779 IGLVKEGL-DYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIW 837

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LLSA     ++++   +A  +++LE +    YV++ N+Y     W      R  M++R
Sbjct: 838 RTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDR 897

Query: 502 GLRKEAGCSWIEVENVAAHS 521
           G++KE G SWIEV+N A H+
Sbjct: 898 GVKKEPGRSWIEVKN-AVHA 916



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 199/398 (50%), Gaps = 39/398 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  YVL  +L AS+ +      +QLHC ++K GF S  +V   L+  Y +   L  A ++
Sbjct: 259 PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERI 318

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     VS+NSLISG VQ G   +AL LF +++R  +  D  +  S L+AC  +G+L
Sbjct: 319 FSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGAL 378

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             GM +HS  +K  +   +++   L+D+Y KC  VE A   F     ++I+ WN ++ A 
Sbjct: 379 HKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAY 438

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEV----------------------------- 207
            +  NL  +F    ++      P+  +Y  +                             
Sbjct: 439 GQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNV 498

Query: 208 ------INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                 I+  A++G +  A+ IL  +P  +  SW +++ GYV  +   EAL LF EM+ +
Sbjct: 499 YVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYR 558

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D   F++ +S  AG+ AL  G  IH+     G  A + + +AL+ +Y++CG+++ A
Sbjct: 559 GIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEA 618

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
              F  +  KN ++WN++++G A++G   + +++F ++
Sbjct: 619 YLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRM 656



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/488 (24%), Positives = 230/488 (47%), Gaps = 46/488 (9%)

Query: 1   PNEYVLFHLLRA--SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           PN Y    +L+A    D+ ++ Y +Q+H      GF S+  V+  L+  Y K   +  A 
Sbjct: 157 PNGYTFAGVLKACVGGDIAFN-YVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAK 215

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           K+F  I    +V+W ++ISG  Q+G   +A+ LF ++  SEI+   Y  +S L+A  ++ 
Sbjct: 216 KVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQ 275

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
             +LG  +H  ++K+       + N L+ +Y +   +  A  +F  M  +D +S+NS+I+
Sbjct: 276 LFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLIS 335

Query: 179 ASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFG------------------- 215
              + G  + A     ++      PD I+   +++  A  G                   
Sbjct: 336 GLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSA 395

Query: 216 ----------------DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                           D+E A     +  + N   WN +L  Y   + + ++  +F +MQ
Sbjct: 396 DIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQ 455

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            + +  +++T+ ++L     L AL  G  IH+ VIK G   ++ V S L+DMY+K GQ+ 
Sbjct: 456 MEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLA 515

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           +A  + R L   ++V+W AMI GY ++   ++ ++LFE+++  R +Q D++ F + ++AC
Sbjct: 516 LALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEME-YRGIQFDNIGFASAISAC 574

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +           + +S    +G   ++ +  ++I L  + G +  A     ++G     +
Sbjct: 575 AGIRALRQGQQIHAQSYAAGFGADLSINN--ALISLYARCGRIQEAYLAFEKIG-DKNNI 631

Query: 440 VWRALLSA 447
            W +L+S 
Sbjct: 632 SWNSLVSG 639



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 219/464 (47%), Gaps = 44/464 (9%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           +LHC I KSGF     +  +L+  Y +      A K+F E    SV SWN +I  +V   
Sbjct: 79  RLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQK 138

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAAC-GQLGSLQLGMAIHSKIVKYSLERGVVIA 142
              +   LF  +    I  + Y+F   L AC G   +      +HS+   Y  +   ++A
Sbjct: 139 SNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVA 198

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE---LAFGFLHR---L 196
           N LID+Y K G +E A  VF  +  KDI++W ++I+  ++NG  E   L F  +H     
Sbjct: 199 NLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIF 258

Query: 197 PNPDTIS---------------------------YNE--VINGI----AQFGDIEDAIMI 223
           P P  +S                           ++E  V NG+    ++   +  A  I
Sbjct: 259 PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERI 318

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
            S+M S +  S+NS+++G V +     AL LF +MQ   +  D  T +++LS  A + AL
Sbjct: 319 FSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGAL 378

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             GM +HS  IK G+ A I++  +LLD+YSKC  VE A   F +   +N+V WN M+  Y
Sbjct: 379 HKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAY 438

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
            +  +L+   E+F Q++ +  + P+  T+ ++L  C  T +    + E   +     G +
Sbjct: 439 GQLDNLSDSFEIFRQMQ-MEGMIPNQFTYPSILRTC--TSLGALYLGEQIHTHVIKTGFQ 495

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
             V  C  +I +  + G++  A R++R L      V W A+++ 
Sbjct: 496 LNVYVCSVLIDMYAKYGQLALALRILRRLPEDDV-VSWTAMIAG 538



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 161/344 (46%), Gaps = 46/344 (13%)

Query: 79  YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
           +++ GK  K + L   +E   + ++  ++   L  C   GSL   M +H +I K   +  
Sbjct: 34  HMEQGK-SKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGE 92

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA-SARNGNLELAFGFLHRL- 196
            ++ + L+D Y + G    A+ VF E  ++ + SWN +I    A+  N ++ F    R+ 
Sbjct: 93  PLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQV-FCLFRRML 151

Query: 197 -----PNPDT------------ISYNEV----------------------INGIAQFGDI 217
                PN  T            I++N V                      I+  ++ G I
Sbjct: 152 AEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYI 211

Query: 218 EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277
           E A  + + +   +  +W ++++G        EA+ LF +M + ++    Y  S++LS  
Sbjct: 212 ESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSAS 271

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
             +     G  +H  VIK G  +   V + L+ +YS+  ++  A+ +F ++  ++ V++N
Sbjct: 272 TKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYN 331

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACS 380
           ++I+G  + G   + +ELF +++  RD L+PD +T  ++L+AC+
Sbjct: 332 SLISGLVQQGFSDRALELFTKMQ--RDCLKPDCITVASLLSACA 373


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 163/545 (29%), Positives = 272/545 (49%), Gaps = 79/545 (14%)

Query: 19  DTYCQQLHCYILKSGFLSNVFVSTALMGFYRK------INS---LADAHKMFVEIP---- 65
           +T+CQQLHC + K G LS   V  ALM  Y        +NS   +A A K+F E P    
Sbjct: 147 ETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRR 206

Query: 66  -QPS----------------------------VVSWNSLISGYVQSGKYRKALNLFVELE 96
            +P+                             V+WN++ISGYV  G Y +A +L   + 
Sbjct: 207 DEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMH 266

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG----VVIANCLIDMYGKC 152
              I  D Y++TS ++A    G   +G  +H+ +++  ++      + + N LI +Y +C
Sbjct: 267 SLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRC 326

Query: 153 GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIA 212
           G + +A  VF +M                               P  D +S+N +++G  
Sbjct: 327 GKLVEARRVFDKM-------------------------------PVKDLVSWNAILSGCV 355

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
               IE+A  I   MP  +  +W  +++G        E L LF +M+ + +   +Y ++ 
Sbjct: 356 NARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAG 415

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332
            ++  + L +L  G  +HS +I+ G D+S+ V +AL+ MYS+CG VE AD++F ++   +
Sbjct: 416 AIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVD 475

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
            V+WNAMI   A++G   + I+L+E++    D+ PD +TFL +L+ACSH  +   +   Y
Sbjct: 476 SVSWNAMIAALAQHGHGVQAIQLYEKMLK-EDILPDRITFLTILSACSHAGL-VKEGRHY 533

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
           F++M   YGI P  +H   +I L+ + G    A+ +   + F     +W ALL+      
Sbjct: 534 FDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHG 593

Query: 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           ++++   +A  +++L    D  Y+ L N+Y + G WD  + +R  MRERG++KE GCSWI
Sbjct: 594 NMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWI 653

Query: 513 EVENV 517
           EVEN+
Sbjct: 654 EVENM 658



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 101/439 (23%), Positives = 191/439 (43%), Gaps = 90/439 (20%)

Query: 11  RASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVV 70
           R  + L   ++ + +H +IL SGF     +   L+  Y K  ++  A  +F +IP+P +V
Sbjct: 4   RYLAQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIV 63

Query: 71  ---------------------------------SWNSLISGYVQSGKYRKALNLFVELER 97
                                            S+N++I+ +  S     AL LFV+++R
Sbjct: 64  AATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKR 123

Query: 98  SEIYADAYSFTSALAACGQLGSLQLG-MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
                D ++F+S L A   +   +     +H ++ K+       + N L+  Y  C S  
Sbjct: 124 LGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCAS-- 181

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
                   +++      + V+ A+AR    E   G        D  ++  +I G  +  D
Sbjct: 182 ------SPLVN------SCVLMAAARKLFDEAPPG------RRDEPAWTTIIAGYVRNDD 223

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           +  A  +L  M    + +WN++++GYV+R    EA  L   M S  + +DEYT+++++S 
Sbjct: 224 LVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISA 283

Query: 277 IAGLSALTWGMLIHSCVIKQGLDAS----IVVASALLDMYSKCGQ--------------- 317
            +       G  +H+ V++  +  S    + V +AL+ +Y++CG+               
Sbjct: 284 ASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKD 343

Query: 318 ----------------VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
                           +E A+S+FR +  ++L+TW  MI+G A+NG   + ++LF Q+K 
Sbjct: 344 LVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMK- 402

Query: 362 VRDLQPDSVTFLNVLAACS 380
           +  L+P    +   +A+CS
Sbjct: 403 LEGLEPCDYAYAGAIASCS 421



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 128/265 (48%), Gaps = 39/265 (14%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSN----VFVSTALMGFYRKINSLADA 57
           +EY    ++ A+S+ G     +Q+H Y+L++    +    + V+ AL+  Y +   L +A
Sbjct: 273 DEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEA 332

Query: 58  HKMFVEIPQPSVVSWNS-------------------------------LISGYVQSGKYR 86
            ++F ++P   +VSWN+                               +ISG  Q+G   
Sbjct: 333 RRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGE 392

Query: 87  KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
           + L LF +++   +    Y++  A+A+C  LGSL  G  +HS+I++   +  + + N LI
Sbjct: 393 EGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALI 452

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTI 202
            MY +CG VE A  VF  M   D +SWN++IAA A++G+   A     ++      PD I
Sbjct: 453 TMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRI 512

Query: 203 SYNEVINGIAQFGDIEDAIMILSSM 227
           ++  +++  +  G +++      +M
Sbjct: 513 TFLTILSACSHAGLVKEGRHYFDTM 537


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 162/506 (32%), Positives = 259/506 (51%), Gaps = 38/506 (7%)

Query: 12  ASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVS 71
           ++SDL W  +   LH  IL+     ++     L+  Y K   L  A ++F  + +   +S
Sbjct: 290 STSDLKWGAH---LHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHIS 346

Query: 72  WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIV 131
           WNSLI+G V  G    AL LF ++ RS +  D +   + L  C        G  +H   +
Sbjct: 347 WNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTI 406

Query: 132 KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG 191
           K  +     + N +I MY KCG  + A  VF  M                          
Sbjct: 407 KSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLM-------------------------- 440

Query: 192 FLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEA 251
                P  +TIS+  +I   ++ GDI  A      MP  N  +WNS+L+ YV      E 
Sbjct: 441 -----PLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEG 495

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           L L+  M+S  V  D  TF+T +   A L+ +  GM + +   K GL  ++ VA++++ M
Sbjct: 496 LKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTM 555

Query: 312 YSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ-LKTVRDLQPDSV 370
           YS+CG ++ A + F S+  K+L++WNAM+  +A+NG   KVI+ FE  LKT  + +P+ +
Sbjct: 556 YSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKT--ECKPNHI 613

Query: 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
           ++++VL+ CSH  +  +    YF+SMT+ +GI PT EH   M+ L+G+ G + +A+ +I 
Sbjct: 614 SYVSVLSGCSHMGLVAEG-KHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIE 672

Query: 431 ELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490
            + F     VW ALL +     DL +A  +A ++++L+ +    YV+L N+Y+  G  D 
Sbjct: 673 GMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDN 732

Query: 491 ASVMRNFMRERGLRKEAGCSWIEVEN 516
            + MR  M+ +G+R   GCSWIEV+N
Sbjct: 733 VADMRKLMKVKGIRTSRGCSWIEVDN 758



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 192/428 (44%), Gaps = 41/428 (9%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQ--PSVVSWNSLISGYVQSGKYRKALNLFVE 94
           N+F    ++      + ++DA K+F E+P      VSW ++ISGY Q+G + ++   F  
Sbjct: 73  NIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSL 132

Query: 95  LERSEIYA----DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
           + R         D +SFTS + ACG LG  +L + +H+ + K        I N ++ MY 
Sbjct: 133 MIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYV 192

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVING 210
           KCG V                               +LA      +  P    +N +I G
Sbjct: 193 KCGDV-------------------------------DLAETVFFDIERPSLFCWNSMIYG 221

Query: 211 IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
            +Q      A+ I + MP  +  SWN++++ +       + L +F EM ++    +  T+
Sbjct: 222 YSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTY 281

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
            ++LS  A  S L WG  +H+ +++      +V  + L+DMY+KCG +++A  +F+SL  
Sbjct: 282 GSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLRE 341

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
            + ++WN++ITG    G     + LF Q++    +  D      +L  CS  D  +    
Sbjct: 342 HDHISWNSLITGVVHFGLGEDALILFNQMRR-SSVVLDEFILPTILGVCSGPD--YASTG 398

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450
           E     T   G+  +     ++I +  + G+  +A  + R +   +  + W A+++A   
Sbjct: 399 ELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRN-TISWTAMITAFSR 457

Query: 451 CSDLDVAR 458
             D+  AR
Sbjct: 458 SGDIGKAR 465



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 168/386 (43%), Gaps = 93/386 (24%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKI---------- 51
           +E++L  +L   S   + +  + LH Y +KSG  S+  V  A++  Y K           
Sbjct: 378 DEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVF 437

Query: 52  ---------------------NSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALN 90
                                  +  A   F  +P+ ++V+WNS++S YVQ+G   + L 
Sbjct: 438 RLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLK 497

Query: 91  LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
           L+V +  + +  D  +FT+++ AC  L  ++LGM + +   K+ L   V +AN ++ MY 
Sbjct: 498 LYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYS 557

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVING 210
           +CG +++A   F  + DKD+ISWN+++AA A+NG                         G
Sbjct: 558 RCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNG------------------------LG 593

Query: 211 IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS--KDVPMDEY 268
           I      ED   +L +   PN  S+ S+L+G  +   V E  H F  M       P +E+
Sbjct: 594 IKVIDTFED---MLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEH 650

Query: 269 TFSTM--LSGIAGL---------------SALTWGMLIHSCVIKQGLDASIVVASALLD- 310
            FS M  L G AGL               +A  W  L+ SC +   L  +   A  L++ 
Sbjct: 651 -FSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMEL 709

Query: 311 -------------MYSKCGQVE-IAD 322
                        MYS+ G+++ +AD
Sbjct: 710 DVEGSEGYVLLSNMYSESGELDNVAD 735



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 173/413 (41%), Gaps = 80/413 (19%)

Query: 95  LERSEIYADAY---SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGK 151
           ++ S+ + DA+   SFT          S  +   +H++++   L+  + + N L+ MY  
Sbjct: 4   MQISQKFYDAFKQCSFTHK--------SPHIARKLHAQLILSGLDSSLFLLNNLLHMYSN 55

Query: 152 CGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP--NPDTISYNEVIN 209
           CG   DA  VF E   ++I +WN++I A   +  +  A      +P    D++S+  +I+
Sbjct: 56  CGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMIS 115

Query: 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
           G +Q G    +    S M    +    +                            D ++
Sbjct: 116 GYSQNGFHSRSFETFSLMIRDTNDGGKNY---------------------------DPFS 148

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           F++++     L      + +H+ V K G      + ++++ MY KCG V++A+++F  + 
Sbjct: 149 FTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIE 208

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389
           R +L  WN+MI GY++     K +++F ++      + D V++  +++  S         
Sbjct: 209 RPSLFCWNSMIYGYSQMYGPYKALQIFNRMP-----ERDEVSWNTLISIFSQ-------- 255

Query: 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
                     +G++     C +M   M  +G             F +YG V    LSA  
Sbjct: 256 --------HGFGVQ-----CLAMFVEMCNQG---------FSPNFMTYGSV----LSACA 289

Query: 450 ACSDLDVARISAAEVIKLEGDSDYVYVM-LCNLYTSHGNWDVASVMRNFMRER 501
           + SDL       A ++++E   D V+   L ++Y   G  D+A  +   +RE 
Sbjct: 290 STSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREH 342


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 165/556 (29%), Positives = 274/556 (49%), Gaps = 40/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++    +LL A +        +++H   ++ G  S++ V TAL+    +   +  A + 
Sbjct: 227 PDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQA 286

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I    VV +N+LI+   Q G   +A   +  +    +  +  ++ S L AC    +L
Sbjct: 287 FKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKAL 346

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IHS I +      V I N LI MY +CG +  A  +F  M  +D+ISWN++IA  
Sbjct: 347 EAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGY 406

Query: 181 ARNGNLELAF----------------GFLHRL---PNPDTISYNEVIN------GIAQFG 215
           AR  +   A                  FLH L    N    +  ++I+      GI   G
Sbjct: 407 ARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNG 466

Query: 216 DIEDAIM--------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
            + +A+M              +     + +  SWNS++ G+        A  LF EMQ++
Sbjct: 467 HLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNE 526

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           ++  D  TF+++LSG     AL  G  IH  + + GL   + + +AL++MY +CG ++ A
Sbjct: 527 ELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDA 586

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            ++F SL  +++++W AMI G A  G+  K IELF Q++      PD  TF ++L+AC+H
Sbjct: 587 RNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNH 646

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  +   + F SM  +YG+ PT+EH   ++ L+G+      A+ +I ++ F     VW
Sbjct: 647 AGLVLEGY-QIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVW 705

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
             LL A     ++ +A  +A   +KL   +  VY++L N+Y + G WD  + +R  M  R
Sbjct: 706 ETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGR 765

Query: 502 GLRKEAGCSWIEVENV 517
           G+RKE G SWIEV+N+
Sbjct: 766 GIRKEPGRSWIEVDNI 781



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 108/399 (27%), Positives = 210/399 (52%), Gaps = 40/399 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H  ++++G   ++F+S  L+  Y K  S+ DAH++F E+P+  V+SWNSLIS Y Q 
Sbjct: 47  KRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQ 106

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G  +KA  LF E++ +    +  ++ S L AC     L+ G  IHS+I+K   +R   + 
Sbjct: 107 GFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQ 166

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
           N L+ MYGKCG +  A  VF  +  +D++S+N+++   A+   ++   G   ++     +
Sbjct: 167 NSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGIS 226

Query: 199 PDTISYNEVINGIA-----------------------------------QFGDIEDAIMI 223
           PD ++Y  +++                                      + GD++ A   
Sbjct: 227 PDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQA 286

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +   +   +N+++          EA   +  M+S  V ++  T+ ++L+  +   AL
Sbjct: 287 FKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKAL 346

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G LIHS + + G  + + + +AL+ MY++CG +  A  +F ++ +++L++WNA+I GY
Sbjct: 347 EAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGY 406

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           AR  D  + + L++Q+++   ++P  VTFL++L+AC+++
Sbjct: 407 ARREDRGEAMRLYKQMQS-EGVKPGRVTFLHLLSACANS 444



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 156/319 (48%), Gaps = 44/319 (13%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
           D  ++ + L  C +   L     IH+++V+  +   + ++N LI+MY KC SV DA  VF
Sbjct: 26  DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 163 GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISY-------------- 204
            EM  +D+ISWNS+I+  A+ G  + AF     + N    P+ I+Y              
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145

Query: 205 ---------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYV 243
                                N +++   + GD+  A  + + +   +  S+N++L  Y 
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205

Query: 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV 303
            +  V E L LFG+M S+ +  D+ T+  +L      S L  G  IH   +++GL++ I 
Sbjct: 206 QKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIR 265

Query: 304 VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363
           V +AL+ M  +CG V+ A   F+ +  +++V +NA+I   A++G     +E FEQ   +R
Sbjct: 266 VGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHG---HNVEAFEQYYRMR 322

Query: 364 D--LQPDSVTFLNVLAACS 380
              +  +  T+L++L ACS
Sbjct: 323 SDGVALNRTTYLSILNACS 341



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 96/182 (52%), Gaps = 5/182 (2%)

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
           P+   +    Q +    D  T+  +L        L     IH+ +++ G+   I +++ L
Sbjct: 9   PDREDVSNTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLL 68

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           ++MY KC  V  A  +F+ + R+++++WN++I+ YA+ G   K  +LFE+++      P+
Sbjct: 69  INMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNA-GFIPN 127

Query: 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTK-DYGIKPTVEHCCSMIRLMGQKGEVWRAQR 427
            +T++++L AC ++    +   +    + K  Y   P V++  S++ + G+ G++ RA++
Sbjct: 128 KITYISILTAC-YSPAELENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRARQ 184

Query: 428 MI 429
           + 
Sbjct: 185 VF 186


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 163/566 (28%), Positives = 286/566 (50%), Gaps = 45/566 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVF--VSTALMGFYRKINSLADAH 58
           P+      LL   +D        Q+H + +K GF +N F  VS  L+  Y ++  L  A 
Sbjct: 145 PDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLAC 204

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
            +F EIP+   V++N+LI+GY + G Y ++++LF+++ +S      ++F+  L A   L 
Sbjct: 205 VLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLH 264

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
              LG  +H+  V     R   + N ++D Y K   V +   +F EM + D +S+N VI+
Sbjct: 265 DFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVIS 324

Query: 179 ASARNGNLELAFGFLHR-------------------------------------LPNPDT 201
           + ++    E +  F                                        L   D+
Sbjct: 325 SYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADS 384

Query: 202 ISY--NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           I +  N +++  A+    E+A +I  S+P   + SW ++++GYV +      L LF +M+
Sbjct: 385 ILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMR 444

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
             ++  D+ TF+T+L   A  ++L  G  +H+ +I+ G   ++   S L+DMY+KCG ++
Sbjct: 445 GSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIK 504

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F  +  +N V+WNA+I+ +A NGD    I  F ++     LQPDSV+ L VL AC
Sbjct: 505 DAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKM-IESGLQPDSVSILGVLTAC 563

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH     ++ +EYF++M+  YGI P  +H   M+ L+G+ G    A++++ E+ F    +
Sbjct: 564 SHCGF-VEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEI 622

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSD-YVYVMLCNLYTSHGNWDVASVMRNFM 498
           +W ++L+A     +  +A  +A ++  +E   D   YV + N+Y + G W+    ++  M
Sbjct: 623 MWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAM 682

Query: 499 RERGLRKEAGCSWIEVEN-VAAHSSN 523
           RERG++K    SW+EV + +   SSN
Sbjct: 683 RERGIKKVPAYSWVEVNHKIHVFSSN 708



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 118/526 (22%), Positives = 228/526 (43%), Gaps = 82/526 (15%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++   I+K+GF ++   S  ++    +   ++ A K++ E+P  + VS N++ISG+V++
Sbjct: 33  RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT 92

Query: 83  G-------------------------------KYRKALNLFVELERSE--IYADAYSFTS 109
           G                                + +A  LF ++ RS      D  +FT+
Sbjct: 93  GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTT 152

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERG--VVIANCLIDMYGKCGSVEDAIGVFGEMID 167
            L  C           +H+  VK   +    + ++N L+  Y +   ++ A  +F E+ +
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE 212

Query: 168 KDIISWNSVIAASARNG----NLELAFGFLHRLPNPDTISYNEVINGIAQFGD------- 216
           KD +++N++I    ++G    ++ L          P   +++ V+  +    D       
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQL 272

Query: 217 ----------------------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRV 248
                                       + +  M+   MP  +  S+N +++ Y   ++ 
Sbjct: 273 HALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQY 332

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
             +LH F EMQ        + F+TMLS  A LS+L  G  +H   +    D+ + V ++L
Sbjct: 333 EASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSL 392

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           +DMY+KC   E A+ +F+SL ++  V+W A+I+GY + G     ++LF +++   +L+ D
Sbjct: 393 VDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRG-SNLRAD 451

Query: 369 SVTFLNVL-AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQR 427
             TF  VL A+ S   +   K    F   +   G    V     ++ +  + G +  A +
Sbjct: 452 QSTFATVLKASASFASLLLGKQLHAFIIRS---GNLENVFSGSGLVDMYAKCGSIKDAVQ 508

Query: 428 MIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK--LEGDS 471
           +  E+      V W AL+SA     D + A  + A++I+  L+ DS
Sbjct: 509 VFEEMP-DRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDS 553


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 162/496 (32%), Positives = 275/496 (55%), Gaps = 11/496 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYR---KINSLADAHKMFVEIPQPSVVSWNSLISGY 79
           +Q+H  ++K+  L++ F  + L+ F         L  A  +F  I  P+   + +LI G+
Sbjct: 23  RQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGF 82

Query: 80  VQSGKYRKALNLFVELERSEIYADA--YSFTSALAACGQLGSLQLGMAIHSKIVKYSLER 137
             +    ++L L+  +     Y+    +S  S L ACG+L +   G  +H +++K  L  
Sbjct: 83  SDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWF 142

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
              + N ++ MY   G +E A  VF  M ++D++SWNS+IA   + G +ELA      +P
Sbjct: 143 DPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMP 202

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP-EALHLFG 256
             D +S N +I+G  + G  E A  +  +M   +  +W S+++ YV +NR P +AL LF 
Sbjct: 203 ERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYV-QNRCPMKALDLFR 261

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD-ASIVVASALLDMYSKC 315
           EM S  +  D     ++LS IA L  +  G  +H+ V    ++ +S  + SAL+DMYSKC
Sbjct: 262 EMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKC 321

Query: 316 GQVEIADSMFRSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           G +E A  +FRS+  R+N+  WN+MI+G A +G   + +++F +++ + D++P+ +TFL 
Sbjct: 322 GYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERM-DIEPNEITFLG 380

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           +L+ CSH  +  ++   YFESM + Y I P ++H   MI L G+ G +  A  +I+ + F
Sbjct: 381 LLSTCSHGGL-VEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPF 439

Query: 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494
            +  + W+A+LSAS     +++ + +A   I+L  D    YV+L N+Y   G WD  + +
Sbjct: 440 EADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKI 499

Query: 495 RNFMRERGLRKEAGCS 510
           R  MR+RG++K AGCS
Sbjct: 500 RLMMRQRGVKKIAGCS 515


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 158/534 (29%), Positives = 276/534 (51%), Gaps = 42/534 (7%)

Query: 23   QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            +Q+H  +++SG    V V   L+  Y K  S++ A  +F ++ +  +VSWN++ISG   S
Sbjct: 926  KQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALS 985

Query: 83   GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS-LQLGMAIHSKIVKYSLERGVVI 141
            G    ++ +FV+L R  +  D ++  S L AC  LG    L   IH+  +K  +     +
Sbjct: 986  GLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFV 1045

Query: 142  ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI------------------------ 177
            +  LID+Y K G +E+A  +F      D+ SWN+++                        
Sbjct: 1046 STTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGE 1105

Query: 178  ---------AASARNGNLELAFG------FLHRLPNPDTISYNEVINGIAQFGDIEDAIM 222
                     AA A  G + L  G       + R  N D    + V++   + G++E A  
Sbjct: 1106 RANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARR 1165

Query: 223  ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
            I + +PSP+  +W ++++G V   +   AL  +  M+   V  DEYTF+T++   + L+A
Sbjct: 1166 IFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTA 1225

Query: 283  LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
            L  G  IH+  +K        V ++L+DMY+KCG +E A  +F+      + +WNAMI G
Sbjct: 1226 LEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVG 1285

Query: 343  YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
             A++G+  + ++ FE++K+ R + PD VTF+ VL+ACSH+ +   +  E F SM K YGI
Sbjct: 1286 LAQHGNAEEALQFFEEMKS-RGVTPDRVTFIGVLSACSHSGL-VSEAYENFYSMQKIYGI 1343

Query: 403  KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
            +P +EH   ++  + + G +  A+++I  + F +   ++R LL+A     D +  +  A 
Sbjct: 1344 EPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAE 1403

Query: 463  EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            +++ LE      YV+L N+Y +   W+  +  RN MR+  ++K+ G SW++++N
Sbjct: 1404 KLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKN 1457



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 167/352 (47%), Gaps = 41/352 (11%)

Query: 69   VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
            V++WN  +S ++Q G+  +A++ FV++  S +  D  +F   L+    L  L+LG  IH 
Sbjct: 871  VIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHG 930

Query: 129  KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
             +V+  L++ V + NCLI+MY K GSV  A  VF +M + D++SWN++I+  A +G  E 
Sbjct: 931  IVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEEC 990

Query: 189  AFGFLHRLPN----PDTISYNEVINGIAQF------------------------------ 214
            + G    L      PD  +   V+   +                                
Sbjct: 991  SVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLI 1050

Query: 215  ------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268
                  G +E+A  +  +    + +SWN+++ GY+     P+AL L+  MQ      ++ 
Sbjct: 1051 DVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQI 1110

Query: 269  TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
            T +       GL  L  G  I + V+K+G +  + V S +LDMY KCG++E A  +F  +
Sbjct: 1111 TLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEI 1170

Query: 329  CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
               + V W  MI+G   NG     +  +  ++  + +QPD  TF  ++ ACS
Sbjct: 1171 PSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSK-VQPDEYTFATLVKACS 1221



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 188/397 (47%), Gaps = 31/397 (7%)

Query: 7    FHLLR---ASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
            F +LR   A+SDL      ++ H  IL SG   + F++  L+  Y K  SL+ A K+F  
Sbjct: 630  FSILRHAIAASDL---PLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDT 686

Query: 64   IPQPS--VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             P  S  +V+WN+++S +    K R   +LF  L RS + A  ++       C    S  
Sbjct: 687  TPDTSRDLVTWNAILSAHAD--KARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPS 744

Query: 122  LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
               ++H   VK  L+  V +A  L+++Y K G + +A  +F  M  +D++ WN ++ A  
Sbjct: 745  AAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYV 804

Query: 182  RNGNLE----LAFGFLHRLP-NPDTISYNEVINGIAQFGDI------------EDAIMIL 224
              G LE    L F   +R    PD ++   +   +    ++                M  
Sbjct: 805  DTG-LEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYD 863

Query: 225  SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
                  +  +WN  L+ ++ R    EA+  F +M +  V  D  TF  MLS +AGL+ L 
Sbjct: 864  DDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLE 923

Query: 285  WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
             G  IH  V++ GLD  + V + L++MY K G V  A ++F  +   +LV+WN MI+G A
Sbjct: 924  LGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCA 983

Query: 345  RNGDLTKVIELFEQLKTVR-DLQPDSVTFLNVLAACS 380
             +G     + +F  L  +R  L PD  T  +VL ACS
Sbjct: 984  LSGLEECSVGMFVDL--LRGGLLPDQFTVASVLRACS 1018



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 172/370 (46%), Gaps = 43/370 (11%)

Query: 1    PNEYVLFHLLRASSDLGWDTY-CQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
            P+++ +  +LRA S LG   +   Q+H   +K+G + + FVST L+  Y K   + +A  
Sbjct: 1005 PDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEF 1064

Query: 60   MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
            +FV      + SWN+++ GY+ SG + KAL L++ ++ S   A+  +  +A  A G L  
Sbjct: 1065 LFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVG 1124

Query: 120  LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            L+ G  I + +VK      + + + ++DMY KCG +E A  +F E+   D ++W ++I+ 
Sbjct: 1125 LKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISG 1184

Query: 180  SARNGNLELAFGFLHRLP----NPDTISY------------------------------- 204
               NG  E A    H +      PD  ++                               
Sbjct: 1185 CVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFD 1244

Query: 205  ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                  +++  A+ G+IEDA  +     +   +SWN+++ G        EAL  F EM+S
Sbjct: 1245 PFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKS 1304

Query: 261  KDVPMDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
            + V  D  TF  +LS    +GL +  +    +S     G++  I   S L+D  S+ G++
Sbjct: 1305 RGVTPDRVTFIGVLSACSHSGLVSEAYENF-YSMQKIYGIEPEIEHYSCLVDALSRAGRI 1363

Query: 319  EIADSMFRSL 328
              A+ +  S+
Sbjct: 1364 REAEKVISSM 1373



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 167/352 (47%), Gaps = 17/352 (4%)

Query: 22   CQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
             + LH Y +K G   +VFV+ AL+  Y K   + +A  +F  +    VV WN ++  YV 
Sbjct: 746  AESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVD 805

Query: 82   SGKYRKALNLFVELERSEIYADAYSF-TSALAACGQLGSLQLGM----AIHSKIVKYSLE 136
            +G   +AL LF E  R+ +  D  +  T A     +   L+  +    A  +K+  Y  +
Sbjct: 806  TGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDD 865

Query: 137  ---RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK----DIISWNSVIAASARNGNLELA 189
                 V+  N  +  + + G   +A+  F +MI+     D +++  +++  A    LEL 
Sbjct: 866  DDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELG 925

Query: 190  ---FGFLHRLPNPDTISY-NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245
                G + R      +S  N +IN   + G +  A  +   M   +  SWN++++G    
Sbjct: 926  KQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALS 985

Query: 246  NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL-SALTWGMLIHSCVIKQGLDASIVV 304
                 ++ +F ++    +  D++T +++L   + L         IH+C +K G+     V
Sbjct: 986  GLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFV 1045

Query: 305  ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
            ++ L+D+YSK G++E A+ +F +    +L +WNAM+ GY  +GD  K + L+
Sbjct: 1046 STTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLY 1097


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 154/504 (30%), Positives = 263/504 (52%), Gaps = 40/504 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP----QPSVVSWNSLISG 78
           +Q+H ++L+ G   + ++ T L+    K+    D +   V  P     P +  W ++I G
Sbjct: 67  KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFL--WTAVIRG 124

Query: 79  YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
           Y   GK+ +A+ ++  + + EI   +++F++ L ACG +G L LG   H++  +      
Sbjct: 125 YTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCF 184

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN 198
           V + N +IDMY KCGS+  A  VF EM                               P 
Sbjct: 185 VYVGNTMIDMYVKCGSIVCARKVFDEM-------------------------------PE 213

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
            D IS+ E+I   A+ G++E A  +  S+P+ +  +W +++TG+    +  EAL  F  M
Sbjct: 214 RDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRM 273

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS--IVVASALLDMYSKCG 316
           +   +  DE T +  +S  A L A  +         K G   S  +V+ SAL+DMYSKCG
Sbjct: 274 EKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCG 333

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            VE A ++F S+  KN+ ++++MI G A +G   + ++LF  + T   ++P++VTF+  L
Sbjct: 334 NVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGAL 393

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
            ACSH+ +  D+  + F SM + +G++PT +H   M+ L+G+ G +  A  +I+ +    
Sbjct: 394 TACSHSGL-VDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEP 452

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
           +G VW ALL A    ++ D+A I+A  + +LE D    Y++L N+Y+S G+W     +R 
Sbjct: 453 HGGVWGALLGACRIHNNPDIAEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRK 512

Query: 497 FMRERGLRKEAGCSWIEVENVAAH 520
            ++E+GL+K    SW+  +N   H
Sbjct: 513 LIKEKGLKKTPAVSWVVDKNGQMH 536



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG--QVEIADSM 324
           E   S+++S +     L     IH  V+++GLD S  + + L+   +K G         +
Sbjct: 47  ELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRV 106

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
              +  +N   W A+I GY   G   + I ++  ++   ++ P S TF  +L AC
Sbjct: 107 IEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRK-EEITPVSFTFSALLKAC 160


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 159/556 (28%), Positives = 284/556 (51%), Gaps = 42/556 (7%)

Query: 1   PNEYVLFHLLRAS--SDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           PN      +L AS  +  G   + +++H +  K+GF+S++ V  AL+  Y K  S+ DA 
Sbjct: 230 PNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDAR 289

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
            +F  +    V+SWN++I G  Q+G   +A  +F+++++     D+ ++ S L      G
Sbjct: 290 LVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTG 349

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           + +    +H   V+  L   + + +  + MY +CGS++DA  +F ++  +++ +WN++I 
Sbjct: 350 AWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIG 409

Query: 179 ASARN--GNLELAFGFLHRLPN--PDTISY------------------------------ 204
             A+   G   L+     R     PD  ++                              
Sbjct: 410 GVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVD 469

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +++  A+ G+   A  +   M   N ++W  +++G        EA  LF +M  
Sbjct: 470 LRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLR 529

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           + +  D  T+ ++LS  A   AL W   +HS  +  GL + + V +AL+ MY+KCG V+ 
Sbjct: 530 EGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDD 589

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  +  +++ +W  MI G A++G     ++LF ++K +   +P+  +F+ VL+ACS
Sbjct: 590 ARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMK-LEGFKPNGYSFVAVLSACS 648

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H  +  D+    F S+T+DYGI+PT+EH   M+ L+G+ G++  A+  I  +        
Sbjct: 649 HAGL-VDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAP 707

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W ALL A     +L++A  +A E +KL+  S   YV+L N+Y + GNW+   ++R+ M+ 
Sbjct: 708 WGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQR 767

Query: 501 RGLRKEAGCSWIEVEN 516
           RG+RKE G SWIEV+N
Sbjct: 768 RGIRKEPGRSWIEVDN 783



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 118/419 (28%), Positives = 206/419 (49%), Gaps = 42/419 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE     +L+A        + +++H +I++SGF S+V V TAL+  Y K  S+ DA  +
Sbjct: 28  PNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLI 87

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ + +V+SW  +I G    G+ ++A + F++++R     ++Y++ S L A    G+L
Sbjct: 88  FDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGAL 147

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +    +HS  V   L   + + N L+ MY K GS++DA  VF  M+++DI SW  +I   
Sbjct: 148 EWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGL 207

Query: 181 ARNGNLELAFGFLHRLPN----PDTISY-------------------------------- 204
           A++G  + AF    ++      P+  +Y                                
Sbjct: 208 AQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFIS 267

Query: 205 -----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                N +I+  A+ G I+DA ++   M   +  SWN+++ G        EA  +F +MQ
Sbjct: 268 DLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQ 327

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            +    D  T+ ++L+      A  W   +H   ++ GL + + V SA + MY +CG ++
Sbjct: 328 QEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSID 387

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            A  +F  L  +N+ TWNAMI G A+     + + LF Q++      PD+ TF+N+L+A
Sbjct: 388 DAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRR-EGFFPDATTFVNILSA 445



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 164/346 (47%), Gaps = 48/346 (13%)

Query: 75  LISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS 134
           +I GY + G    A+ ++ ++ R     +  ++ S L AC    SL+ G  IH+ I++  
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 135 LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH 194
            +  V +   L++MY KCGS++DA  +F +M+++++ISW  +I   A  G  + AF   H
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAF---H 117

Query: 195 RLPN-------PDTISYNEVING-----------------------------------IA 212
           R          P++ +Y  ++N                                     A
Sbjct: 118 RFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYA 177

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
           + G I+DA ++   M   +  SW  ++ G     R  EA  LF +M+      +  T+ +
Sbjct: 178 KSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLS 237

Query: 273 ML--SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
           +L  S I    AL W   +H    K G  + + V +AL+ MY+KCG ++ A  +F  +C 
Sbjct: 238 ILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCD 297

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           +++++WNAMI G A+NG   +   +F +++      PDS T+L++L
Sbjct: 298 RDVISWNAMIGGLAQNGCGHEAFTIFLKMQQ-EGFVPDSTTYLSLL 342



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 9/246 (3%)

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDK----DIISWNSVIAASARNGNLE----LAFGFLHRL 196
           +I  Y + G  EDA+ V+ +M  +    + I++ S++ A     +L+    +    +   
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
              D      ++N   + G I+DA +I   M   N  SW  ++ G  +  R  EA H F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           +MQ +    + YT+ ++L+  A   AL W   +HS  +  GL   + V +AL+ MY+K G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            ++ A  +F  +  +++ +W  MI G A++G   +   LF Q++    L P+  T+L++L
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCL-PNLTTYLSIL 239

Query: 377 AACSHT 382
            A + T
Sbjct: 240 NASAIT 245


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 156/534 (29%), Positives = 273/534 (51%), Gaps = 42/534 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H   L+    S++ V+T LM  Y K      A ++F  +    +V+W+++I+  VQ+
Sbjct: 349 KEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQT 408

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   +AL+LF E++  ++  +  +  S L AC  L  L+LG +IH   VK  ++  +   
Sbjct: 409 GYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTG 468

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
             L+ MY KCG    A+  F  M  +DI++WNS+I   A+ G+   A    ++L     N
Sbjct: 469 TALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAIN 528

Query: 199 PDTISYNEVINGIAQFGDIEDAIMI-------------------------LSSMPS---- 229
           PD  +   V+   A   D++    I                           S+PS    
Sbjct: 529 PDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFL 588

Query: 230 -------PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
                   +  +WN I+  Y+      EA+  F +M+ ++   +  TF ++L   A L+A
Sbjct: 589 FNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAA 648

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
              GM  H+C+I+ G  ++ +V ++L+DMY+KCGQ+  ++ +F  +  K+ V+WNAM++G
Sbjct: 649 FREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSG 708

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           YA +G   + I LF  ++  + +Q DSV+F++VL+AC H  +  ++  + F SM+  Y I
Sbjct: 709 YAVHGHGDRAIALFSLMQESQ-VQIDSVSFVSVLSACRHXGL-VEEGRKIFHSMSDKYHI 766

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
           KP +EH   M+ L+G+ G        I+ +       VW ALL +    S++ +  ++  
Sbjct: 767 KPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALD 826

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++KLE  +   +V+L ++Y   G W  A   R+ M + GL+K  GCSW+E++N
Sbjct: 827 HLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKN 880



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 195/394 (49%), Gaps = 39/394 (9%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H  I+ SGF  +  + T L+  Y   +    A  +F   P PS + WNS+I  Y +S 
Sbjct: 50  QIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSK 108

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           +Y +AL ++  +    +  D Y+FT  L AC    +LQ G+  H +I +  LER V I  
Sbjct: 109 QYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGA 168

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NP 199
            L+DMY K G ++ A  VF +M  +D+++WN++IA  +++ +   A  F   +      P
Sbjct: 169 GLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEP 228

Query: 200 DTISYNEVINGIAQF---------------------------------GDIEDAIMILSS 226
            ++S   +  GI +                                  GD++ A  +   
Sbjct: 229 SSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQ 288

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           M   +  SW +++ GY +     E L LF +M+  +V +++ +  +     A    L  G
Sbjct: 289 MVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKG 348

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
             IH C ++Q +D+ I+VA+ L+ MY+KCG+ E A  +F  L  ++LV W+A+I    + 
Sbjct: 349 KEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQT 408

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           G   + + LF++++  + ++P+ VT +++L AC+
Sbjct: 409 GYPEEALSLFQEMQN-QKMKPNRVTLMSILPACA 441



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 117/487 (24%), Positives = 222/487 (45%), Gaps = 46/487 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L +L      L     C+ +H Y+ +  F S V  S  L+  Y K   +  A ++
Sbjct: 228 PSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAV--SNGLIDLYSKCGDVDVARRV 285

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++     VSW ++++GY  +G + + L LF +++   +  +  S  SA  A  +   L
Sbjct: 286 FDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDL 345

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH   ++  ++  +++A  L+ MY KCG  E A  +F  +  +D+++W+++IAA 
Sbjct: 346 EKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAAL 405

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQF---------------------- 214
            + G  E A      + N    P+ ++   ++   A                        
Sbjct: 406 VQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDL 465

Query: 215 -------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                        G    A+   + M S +  +WNS++ GY        A+ +F +++  
Sbjct: 466 STGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLS 525

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D  T   ++   A L+ L  G  IH  ++K G ++   V +AL+DMY+KCG +  A
Sbjct: 526 AINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSA 585

Query: 322 DSMF-RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           + +F ++   K+ VTWN +I  Y +NG   + I  F Q++ + +  P+SVTF++VL A +
Sbjct: 586 EFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMR-LENFHPNSVTFVSVLPAAA 644

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           +     + ++  F +     G         S+I +  + G++  ++++  E+      V 
Sbjct: 645 YLAAFREGMA--FHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKD-TVS 701

Query: 441 WRALLSA 447
           W A+LS 
Sbjct: 702 WNAMLSG 708



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 161/357 (45%), Gaps = 41/357 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  +L A +DL      + +HC+ +K+   S++   TAL+  Y K      A   
Sbjct: 428 PNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTT 487

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    +V+WNSLI+GY Q G    A+++F +L  S I  DA +    + AC  L  L
Sbjct: 488 FNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDL 547

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
             G  IH  IVK   E    + N LIDMY KCGS+  A  +F +    KD ++WN +IAA
Sbjct: 548 DQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607

Query: 180 SARNGNLELAFGFLH--RLPN--PDTISY------------------------------- 204
             +NG+ + A    H  RL N  P+++++                               
Sbjct: 608 YMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSN 667

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +I+  A+ G +  +  + + M   ++ SWN++L+GY        A+ LF  MQ 
Sbjct: 668 TLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQE 727

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLI-HSCVIKQGLDASIVVASALLDMYSKCG 316
             V +D  +F ++LS       +  G  I HS   K  +   +   + ++D+  + G
Sbjct: 728 SQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAG 784


>gi|347954452|gb|AEP33726.1| chlororespiratory reduction 21, partial [Aethionema cordifolium]
          Length = 618

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 153/523 (29%), Positives = 278/523 (53%), Gaps = 11/523 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +   L AS+ +G     +Q H   + +G   +  + T+++ FY K+  +  A  +
Sbjct: 57  PTRVTVSTCLSASAHMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIECAEMI 116

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ +  VV+WN LISGYVQ G    A+     +    +  D  + ++ ++A      L
Sbjct: 117 FDKMIEKDVVTWNLLISGYVQQGLIEDAIYKCKLMRLENLKFDCVTISTLMSAAAHTQDL 176

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  +    ++ SLE  +V A+  +DMY KCG + DA  VF   + KD++ WN+++AA 
Sbjct: 177 NLGKQLQCYCLRNSLESDIVSASTTVDMYAKCGRILDAKKVFDSTVHKDLMLWNTLLAAY 236

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDA----IMILSSMPSPNS 232
           A + +   A    + +      P+ IS+N +I  + + G + +A    + I S+  SPN 
Sbjct: 237 AESSHSGEALRLFYEMQLESVTPNVISWNLIILSLLRXGQVTEAKXMFLQIQSTGISPNL 296

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
            SW +++ G V      EA+  F +MQ   +  + ++ +  LS  + L++L +G  IH  
Sbjct: 297 ISWTTLMNGLVQNGYSEEAIMYFKKMQESGLRPNPFSXTVALSACSNLASLHFGRSIHGY 356

Query: 293 VIK-QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
           +I+ Q    S+ + ++LLDMY+KCG +  A+ +F +     L  +NAMI+ Y   G + +
Sbjct: 357 IIRNQWHSGSVSLETSLLDMYAKCGDINKAERVFGNKLYSELPLYNAMISAYGLYGKVEE 416

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411
            I L+  L+ + D++PD++TF N+L+AC+HT    ++  + F  M   +G++P +EH   
Sbjct: 417 AITLYRDLEAL-DIKPDNITFTNLLSACNHTG-SVNQAIQIFTDMVSKHGMQPCLEHYGL 474

Query: 412 MIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471
           M+ L    GE+  A R+++++ +     + ++LL+        ++    +  +++ E D+
Sbjct: 475 MVDLFASSGEIEEALRIVKDMPYEPDARMIQSLLAYCKKEHKTELVDYLSKYLLESEPDN 534

Query: 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
              YV + N Y + GNW+    MR  M+E+GL+K+ GCSWI+V
Sbjct: 535 SGNYVTISNAYAAGGNWEEVMKMREMMKEKGLKKKPGCSWIQV 577



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 163/378 (43%), Gaps = 79/378 (20%)

Query: 47  FYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYS 106
            Y K   L DA K+F  +P+ +VV+WNSL+ GYVQ+G   +A+ L  ++    I     +
Sbjct: 2   MYGKCGILDDARKVFDRMPERNVVAWNSLMVGYVQNGMNEEAIRLLSDMMNEGIEPTRVT 61

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
            ++ L+A   +G ++ G   H+  +   LE   ++   +++ Y K G +E A  +F +MI
Sbjct: 62  VSTCLSASAHMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIECAEMIFDKMI 121

Query: 167 DKDIISWNSVIAASARNGNLELAF--GFLHRLPN-------------------------- 198
           +KD+++WN +I+   + G +E A     L RL N                          
Sbjct: 122 EKDVVTWNLLISGYVQQGLIEDAIYKCKLMRLENLKFDCVTISTLMSAAAHTQDLNLGKQ 181

Query: 199 -----------PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
                       D +S +  ++  A+ G I DA  +  S    +   WN++L  Y   + 
Sbjct: 182 LQCYCLRNSLESDIVSASTTVDMYAKCGRILDAKKVFDSTVHKDLMLWNTLLAAYAESSH 241

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307
             EAL LF EMQ + V  +                ++W ++I S +              
Sbjct: 242 SGEALRLFYEMQLESVTPN---------------VISWNLIILSLL-------------- 272

Query: 308 LLDMYSKCGQVEIADSMFRSL----CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363
                 + GQV  A  MF  +       NL++W  ++ G  +NG   + I  F++++   
Sbjct: 273 ------RXGQVTEAKXMFLQIQSTGISPNLISWTTLMNGLVQNGYSEEAIMYFKKMQE-S 325

Query: 364 DLQPDSVTFLNVLAACSH 381
            L+P+  +    L+ACS+
Sbjct: 326 GLRPNPFSXTVALSACSN 343



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 126/265 (47%), Gaps = 40/265 (15%)

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP------- 199
           DMYGKCG ++DA  VF  M ++++++WNS++    +NG  E A   L  + N        
Sbjct: 1   DMYGKCGILDDARKVFDRMPERNVVAWNSLMVGYVQNGMNEEAIRLLSDMMNEGIEPTRV 60

Query: 200 --------------------------------DTISYNEVINGIAQFGDIEDAIMILSSM 227
                                           D I    ++N   + G IE A MI   M
Sbjct: 61  TVSTCLSASAHMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIECAEMIFDKM 120

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
              +  +WN +++GYV +  + +A++    M+ +++  D  T ST++S  A    L  G 
Sbjct: 121 IEKDVVTWNLLISGYVQQGLIEDAIYKCKLMRLENLKFDCVTISTLMSAAAHTQDLNLGK 180

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
            +    ++  L++ IV AS  +DMY+KCG++  A  +F S   K+L+ WN ++  YA + 
Sbjct: 181 QLQCYCLRNSLESDIVSASTTVDMYAKCGRILDAKKVFDSTVHKDLMLWNTLLAAYAESS 240

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTF 372
              + + LF +++ +  + P+ +++
Sbjct: 241 HSGEALRLFYEMQ-LESVTPNVISW 264



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 1/168 (0%)

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G ++DA  +   MP  N  +WNS++ GYV      EA+ L  +M ++ +     T ST L
Sbjct: 7   GILDDARKVFDRMPERNVVAWNSLMVGYVQNGMNEEAIRLLSDMMNEGIEPTRVTVSTCL 66

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
           S  A +  +  G   H+  I  GL+   ++ +++L+ Y K G +E A+ +F  +  K++V
Sbjct: 67  SASAHMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIECAEMIFDKMIEKDVV 126

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           TWN +I+GY + G +   I    +L  + +L+ D VT   +++A +HT
Sbjct: 127 TWNLLISGYVQQGLIEDAIYKC-KLMRLENLKFDCVTISTLMSAAAHT 173


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 144/494 (29%), Positives = 269/494 (54%), Gaps = 31/494 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H  I+ +GF +++ V+TAL+  Y K  S  +A ++F ++ +  +VSWN +I  YV +
Sbjct: 227 RKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLN 286

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G + +AL L+ +L+         +F S L AC  + +L  G  +HS I++  L+  V +A
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVA 346

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
             L++MY KCGS+E+A  VF  M ++D ++W+++I A A NG     +G           
Sbjct: 347 TALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNG-----YG----------- 390

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ-SK 261
                        D   A  +   + S ++ SWN+++T YV       A+ +F EM  + 
Sbjct: 391 ------------KDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAA 438

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D  TF  +L   A L  L+    +H+ + +  L++++VV + L++MY++CG +E A
Sbjct: 439 GLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEA 498

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           + +F +   K +V+W AM+  +++ G   + ++LF+++  +  ++PD VT+ ++L  C+H
Sbjct: 499 ERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMD-LEGVKPDDVTYTSILFVCTH 557

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
                ++   YF  M + + + PT +H  +M+ L+G+ G ++ A+ ++  + F    V W
Sbjct: 558 GG-SLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAW 616

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
              L+A      L++   +A  V +L+  S   Y+ + N+Y +HG W+  + +R  M ER
Sbjct: 617 MTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEER 676

Query: 502 GLRKEAGCSWIEVE 515
           GL+K  G S+IEV+
Sbjct: 677 GLKKLPGLSFIEVD 690



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/454 (27%), Positives = 210/454 (46%), Gaps = 77/454 (16%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      +L + S  G     + LH  I  S F  +  V  AL+  Y K +SL DA  +
Sbjct: 5   PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 61  F--VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           F  ++  Q +VVSWN++I+ Y Q+G   +AL L+  +    +  D  +F S L AC    
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC---S 121

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           SL  G  IH+++    L+    +AN L+ MY + GSV DA  +F  +  +D  SWN+VI 
Sbjct: 122 SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVIL 181

Query: 179 ASARNGNLELAFGFLHRLP---NPDTISYNEVINGIA----------------------- 212
           A +++G+   A      +     P++ +Y  VI+G +                       
Sbjct: 182 AHSQSGDWSGALRIFKEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTD 241

Query: 213 ------------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                       + G   +A  +   M   +  SWN ++  YV      EAL L+ ++  
Sbjct: 242 LVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDM 301

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +     + TF ++L   + + AL  G L+HS ++++GLD+ + VA+AL++MY+KCG +E 
Sbjct: 302 EGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEE 361

Query: 321 ADSMFRS----------------------------------LCRKNLVTWNAMITGYARN 346
           A  +F +                                  L  ++ ++WNAMIT Y +N
Sbjct: 362 ARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQN 421

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           G     +++F ++     L+PD+VTF+ VL AC+
Sbjct: 422 GCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACA 455



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 181/383 (47%), Gaps = 43/383 (11%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
           D  +F + L +C   G +  G A+H +I     ER  ++ N LI MYGKC S+ DA  VF
Sbjct: 6   DNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVF 65

Query: 163 GEM--IDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISY------------ 204
             M    ++++SWN++IAA A+NG+   A     R+       D +++            
Sbjct: 66  ESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ 125

Query: 205 --------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
                               N ++   A+FG + DA  +  S+ + + +SWN+++  +  
Sbjct: 126 GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQ 185

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV 304
                 AL +F EM+  DV  +  T+  ++SG +    L  G  IH+ ++  G D  +VV
Sbjct: 186 SGDWSGALRIFKEMKC-DVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVV 244

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
           A+AL++MY KCG    A  +F  + ++++V+WN MI  Y  NGD  + +EL+++L  +  
Sbjct: 245 ATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLD-MEG 303

Query: 365 LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424
            +    TF+++L ACS   +          S   + G+   V    +++ +  + G +  
Sbjct: 304 FKRTKATFVSILGACS--SVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEE 361

Query: 425 AQRMIRELGFGSYGVVWRALLSA 447
           A+++   +      V W  L+ A
Sbjct: 362 ARKVFNAMK-NRDAVAWSTLIGA 383



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 2/205 (0%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      +L A + LG  +  + LH  I +S   SNV V+  L+  Y +  SL +A ++
Sbjct: 442 PDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERL 501

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    + +VVSW ++++ + Q G+Y +AL+LF E++   +  D  ++TS L  C   GSL
Sbjct: 502 FAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSL 561

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G    + + + ++L         ++D+ G+ G + DA  +   M  + D ++W + + 
Sbjct: 562 EQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLT 621

Query: 179 ASARNGNLELAFGFLHRLPNPDTIS 203
           A   +G LEL      R+   D  S
Sbjct: 622 ACRIHGKLELGEAAAERVYELDPSS 646


>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
 gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
 gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 154/492 (31%), Positives = 252/492 (51%), Gaps = 36/492 (7%)

Query: 27  CYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYR 86
           C +     L N++    ++  Y K   L  A  +F  +P+  VVSWN+++ GY Q G   
Sbjct: 102 CKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLH 161

Query: 87  KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
           +AL  + E  RS I  + +SF   L AC +   LQL    H +++       VV++  +I
Sbjct: 162 EALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSII 221

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNE 206
           D Y KCG +E A   F EM  KDI  W ++I+                            
Sbjct: 222 DAYAKCGQMESAKRCFDEMTVKDIHIWTTLIS---------------------------- 253

Query: 207 VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
              G A+ GD+E A  +   MP  N  SW +++ GYV +     AL LF +M +  V  +
Sbjct: 254 ---GYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPE 310

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
           ++TFS+ L   A +++L  G  IH  +I+  +  + +V S+L+DMYSK G +E ++ +FR
Sbjct: 311 QFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFR 370

Query: 327 SLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
            +C  + + V WN MI+  A++G   K + + + +   R +QP+  T + +L ACSH+ +
Sbjct: 371 -ICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFR-VQPNRTTLVVILNACSHSGL 428

Query: 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRAL 444
             ++   +FESMT  +GI P  EH   +I L+G+ G      R I E+ F     +W A+
Sbjct: 429 -VEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAI 487

Query: 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504
           L       + ++ + +A E+IKL+ +S   Y++L ++Y  HG W++   +R  M++R + 
Sbjct: 488 LGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVN 547

Query: 505 KEAGCSWIEVEN 516
           KE   SWIE+E 
Sbjct: 548 KEKAVSWIEIEK 559



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 170/407 (41%), Gaps = 66/407 (16%)

Query: 73  NSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132
            S +S +    +  +A++    L +  I        S L  CG   SL+ G  IH  +  
Sbjct: 15  QSFLSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKI 74

Query: 133 YSLER-GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG 191
              +R   +++N LI MY KCG   DA  VF +M  +++ SWN++++   ++G L  A  
Sbjct: 75  TGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARV 134

Query: 192 FLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEA 251
               +P  D +S+N ++ G AQ G++                                EA
Sbjct: 135 VFDSMPERDVVSWNTMVIGYAQDGNLH-------------------------------EA 163

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           L  + E +   +  +E++F+ +L+       L      H  V+  G  +++V++ +++D 
Sbjct: 164 LWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDA 223

Query: 312 YSKCGQ-------------------------------VEIADSMFRSLCRKNLVTWNAMI 340
           Y+KCGQ                               +E A+ +F  +  KN V+W A+I
Sbjct: 224 YAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALI 283

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
            GY R G   + ++LF ++  +  ++P+  TF + L  C+   I   +  +         
Sbjct: 284 AGYVRQGSGNRALDLFRKMIAL-GVKPEQFTFSSCL--CASASIASLRHGKEIHGYMIRT 340

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
            ++P      S+I +  + G +  ++R+ R        V W  ++SA
Sbjct: 341 NVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISA 387



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 119/262 (45%), Gaps = 36/262 (13%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE+    LL A          +Q H  +L +GFLSNV +S +++  Y K   +  A + F
Sbjct: 178 NEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCF 237

Query: 62  VEIPQPSVVSWNSLIS-------------------------------GYVQSGKYRKALN 90
            E+    +  W +LIS                               GYV+ G   +AL+
Sbjct: 238 DEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALD 297

Query: 91  LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
           LF ++    +  + ++F+S L A   + SL+ G  IH  +++ ++    ++ + LIDMY 
Sbjct: 298 LFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYS 357

Query: 151 KCGSVEDAIGVFGEMIDK-DIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYN 205
           K GS+E +  VF    DK D + WN++I+A A++G    A   L  +      P+  +  
Sbjct: 358 KSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLV 417

Query: 206 EVINGIAQFGDIEDAIMILSSM 227
            ++N  +  G +E+ +    SM
Sbjct: 418 VILNACSHSGLVEEGLRWFESM 439



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 91/192 (47%), Gaps = 3/192 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P ++     L AS+ +    + +++H Y++++    N  V ++L+  Y K  SL  + ++
Sbjct: 309 PEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERV 368

Query: 61  F-VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F +   +   V WN++IS   Q G   KAL +  ++ +  +  +  +    L AC   G 
Sbjct: 369 FRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGL 428

Query: 120 LQLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
           ++ G+    S  V++ +        CLID+ G+ G  ++ +    EM  + D   WN+++
Sbjct: 429 VEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAIL 488

Query: 178 AASARNGNLELA 189
                +GN EL 
Sbjct: 489 GVCRIHGNEELG 500


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 162/551 (29%), Positives = 270/551 (49%), Gaps = 66/551 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+  VL  +++  + L      +Q+HC+ L SG   +  V ++L+  Y + + L DA  +
Sbjct: 72  PDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNV 131

Query: 61  FVEIPQPSVV-----------------------------------SWNSLISGYVQSGKY 85
           F ++PQP VV                                   SWN +ISG+ +SG Y
Sbjct: 132 FDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSY 191

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
             A+ +F  +    +  D  S +S L A G L    +G+ IH  ++K  L     + + L
Sbjct: 192 LDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSAL 251

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYN 205
           IDMYGKC    +  GVF EM + D+ + N+++   +RNG ++ A     +    D     
Sbjct: 252 IDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDL---- 307

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
                                    N  SW S++       +  EAL LF EMQ + V  
Sbjct: 308 -------------------------NVVSWTSMIASCSQNGKDMEALELFREMQIEGVKP 342

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           +  T   +L     ++AL  G   H   ++ G+   + V SAL+DMY+KCG++  +   F
Sbjct: 343 NSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCF 402

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
             +  +NLV+WN+++ GYA +G   + I +FE ++     +PD V+F  VL+AC+   + 
Sbjct: 403 DMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQ-KPDHVSFTCVLSACTQGGLT 461

Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
            ++   YF+SM++++G++  +EH   M+ L+G+ G +  A  MI+++ F     VW ALL
Sbjct: 462 -EEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALL 520

Query: 446 SASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505
           S+    + +D+  I+A  V +LE  +   Y++L N+Y S   W    ++R+ MR RGL+K
Sbjct: 521 SSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKK 580

Query: 506 EAGCSWIEVEN 516
             G SWIE++N
Sbjct: 581 NPGYSWIEIKN 591



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 158/353 (44%), Gaps = 36/353 (10%)

Query: 53  SLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALA 112
           SL+ AH   ++    + +S    I  + +   +   + +F  +    I  D+    + + 
Sbjct: 27  SLSQAHAHILK----TGISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIK 82

Query: 113 ACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS 172
            C  L +LQ G  +H   +   L    V+ + L+ MY +   ++DA  VF ++    +++
Sbjct: 83  TCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVT 142

Query: 173 WNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
            +++I+  AR G          R+     + Y     G+                   N 
Sbjct: 143 SSALISRFARKG----------RVKETKELFYQTRDLGVEL-----------------NL 175

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
            SWN +++G+       +A+ +F  M  + +  D  + S++L  +  L     G+ IH  
Sbjct: 176 VSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCY 235

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           VIKQGL     V SAL+DMY KC        +F  +   ++   NA++TG +RNG +   
Sbjct: 236 VIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNA 295

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
           +E+F+Q K + DL  + V++ +++A+CS      + + E F  M  + G+KP 
Sbjct: 296 LEVFKQFKGM-DL--NVVSWTSMIASCSQNGKDMEAL-ELFREMQIE-GVKPN 343



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 111/240 (46%), Gaps = 17/240 (7%)

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
           N     + +F  M ++ +  D     T++   A LSAL  G  +H   +  GL    VV 
Sbjct: 53  NHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVL 112

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           S+LL MY +   ++ A ++F  L +  +VT +A+I+ +AR G + +  ELF Q    RDL
Sbjct: 113 SSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQ---TRDL 169

Query: 366 --QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW 423
             + + V++  +++  + +    D V   F++M  + G+KP      S++  +G      
Sbjct: 170 GVELNLVSWNGMISGFNRSGSYLDAVL-MFQNMHLE-GLKPDGTSVSSVLPAVGDLDMPL 227

Query: 424 RAQRM---IRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
              ++   + + G G    V  AL+   G C+        A+E+  +  + D V V  CN
Sbjct: 228 MGIQIHCYVIKQGLGPDKFVVSALIDMYGKCA-------CASEMSGVFNEMDEVDVGACN 280


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 158/556 (28%), Positives = 280/556 (50%), Gaps = 41/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL A S +G     +QLH Y+LK+G   +  +  +L+  Y K   + +A ++
Sbjct: 242 PDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQI 301

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    + +VV WN ++  Y Q     K+ ++F  +  + +  + +++   L  C   G +
Sbjct: 302 FDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEI 361

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IHS  +K   +  + ++  LIDMY K G ++ A  +   + +KD++SW S+IA  
Sbjct: 362 GLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGY 421

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVI---------------------------- 208
            ++   + A      +      PD I     I                            
Sbjct: 422 VQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADV 481

Query: 209 ---NGI----AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              NG+    A+ G  ++A     ++      +WN +++G+       EAL +F +M   
Sbjct: 482 SIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQA 541

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
               + +TF + +S  A L+ +  G  IH+ VIK G  +   +++AL+ +Y KCG +E A
Sbjct: 542 GAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDA 601

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F  + ++N V+WN +IT  +++G   + ++LF+Q+K  + L+P  VTF+ VL ACSH
Sbjct: 602 KMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQ-QGLKPSDVTFVGVLTACSH 660

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  + +  YF+SM+ ++GI P  +H   ++ ++G+ G++ RA+R + E+   +  +VW
Sbjct: 661 VGLVEEGLC-YFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVW 719

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LLSA     +L++   +A  +++LE      YV+L N Y   G W     +R  M++R
Sbjct: 720 RTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDR 779

Query: 502 GLRKEAGCSWIEVENV 517
           G+RKE G SWIEV+NV
Sbjct: 780 GVRKEPGRSWIEVKNV 795



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 121/466 (25%), Positives = 223/466 (47%), Gaps = 44/466 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  YVL  +L A +        + +H  + K GF S  FV  AL+  Y +  S   A ++
Sbjct: 141 PTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRV 200

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++     V++N+LISG+ Q G   +AL +F E++ S +  D+ +  S LAAC  +G L
Sbjct: 201 FCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDL 260

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +HS ++K  +    ++   L+D+Y K G +E+A+ +F      +++ WN ++ A 
Sbjct: 261 RKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAY 320

Query: 181 ARNGNLELAFGFLHRL------PNPDT-------------ISYNEVINGI---------- 211
            +  +L  +F   +R+      PN  T             I   E I+ +          
Sbjct: 321 GQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDM 380

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     +++G ++ A  IL  +   +  SW S++ GYV      EAL  F EMQ+ 
Sbjct: 381 YVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQAC 440

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D    ++ +S  AG+ A+  G  IH+ V   G  A + + + L+ +Y++CG  + A
Sbjct: 441 GIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEA 500

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            S F ++  K  +TWN +I+G+A++G   + +++F ++      + +  TF++ ++A ++
Sbjct: 501 FSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQA-GAKYNVFTFVSSISASAN 559

Query: 382 -TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426
             DI   K  +   +     G     E   ++I L G+ G +  A+
Sbjct: 560 LADI---KQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAK 602



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 186/396 (46%), Gaps = 40/396 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           ++H   +  G      +   L+  Y K   +  A ++F E+     VSW +++SGY Q+G
Sbjct: 63  EIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNG 122

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
              +A+ L+ E+ RS +    Y  +S L+AC +    QLG  IH ++ K        + N
Sbjct: 123 LGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGN 182

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NP 199
            LI +Y +C S   A  VF +M+  D +++N++I+  A+ G+ + A G    +     +P
Sbjct: 183 ALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSP 242

Query: 200 DTI------------------------------SYNEVING-----IAQFGDIEDAIMIL 224
           D++                              S + ++ G       + GDIE+A+ I 
Sbjct: 243 DSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIF 302

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
            S    N   WN +L  Y   + + ++  +F  M +  V  +++T+  ML        + 
Sbjct: 303 DSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIG 362

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  IHS  IK G  + + V+  L+DMYSK G ++ A  +   +  K++V+W +MI GY 
Sbjct: 363 LGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYV 422

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           ++    + +E F++++    + PD++   + ++AC+
Sbjct: 423 QHEFCKEALETFKEMQAC-GIWPDNIGLASAISACA 457


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 162/553 (29%), Positives = 279/553 (50%), Gaps = 68/553 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +VL +L +  ++L      +Q+HC    SG   + FV  ++   Y +   + DA K+
Sbjct: 114 PDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKV 173

Query: 61  FVEIP-----------------------------------QPSVVSWNSLISGYVQSGKY 85
           F  +                                    + ++VSWN ++SG+ +SG +
Sbjct: 174 FDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYH 233

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
           ++A+ +F ++       D  + +S L + G    L +G  IH  ++K  L +   + + +
Sbjct: 234 KEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAM 293

Query: 146 IDMYGKCGSVEDAIGVFG--EMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS 203
           IDMYGK G V   I +F   EM++  +   N+ I   +RNG ++ A              
Sbjct: 294 IDMYGKSGHVYGIISLFNQFEMMEAGVC--NAYITGLSRNGLVDKA-------------- 337

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
                  +  F   ++  M L      N  SW SI+ G     +  EAL LF EMQ   V
Sbjct: 338 -------LEMFELFKEQTMEL------NVVSWTSIIAGCAQNGKDIEALELFREMQVAGV 384

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             +  T  +ML     ++AL  G   H   ++  L  ++ V SAL+DMY+KCG++ ++  
Sbjct: 385 KPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQI 444

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F  +  KNLV WN+++ G++ +G   +V+ +FE L   R L+PD ++F ++L+AC    
Sbjct: 445 VFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTR-LKPDFISFTSLLSACGQVG 503

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
           +  D+  +YF+ M+++YGIKP +EH   M+ L+G+ G++  A  +I+E+ F     VW A
Sbjct: 504 LT-DEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGA 562

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           LL++    +++D+A I+A ++  LE ++   YV+L N+Y + G W     +RN M   GL
Sbjct: 563 LLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGL 622

Query: 504 RKEAGCSWIEVEN 516
           +K  GCSWI+V+N
Sbjct: 623 KKNPGCSWIQVKN 635



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 133/497 (26%), Positives = 221/497 (44%), Gaps = 67/497 (13%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q H  ILKSG  ++ ++S  L+  Y   N   DA  +   IP P++ S++SLI    ++ 
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
            + +++ +F  +    +  D++   +    C +L + ++G  IH       L+    +  
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS 203
            +  MY +CG + DA  VF  M DKD+++ ++++ A AR G L                 
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCL----------------- 198

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPS----PNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                         E+ + ILS M S     N  SWN IL+G+       EA+ +F ++ 
Sbjct: 199 --------------EEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIH 244

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
                 D+ T S++L  +     L  G LIH  VIKQGL     V SA++DMY K G V 
Sbjct: 245 HLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVY 304

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
              S+F           NA ITG +RNG + K +E+FE  K  + ++ + V++ +++A C
Sbjct: 305 GIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKE-QTMELNVVSWTSIIAGC 363

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG--SY 437
           +      + + E F  M +  G+KP      SM+   G           I  LG G  ++
Sbjct: 364 AQNGKDIEAL-ELFREM-QVAGVKPNHVTIPSMLPACGN----------IAALGHGRSTH 411

Query: 438 GVVWR-----------ALLSASGACSDLDVARISAAEVIKLEGDSDYV-YVMLCNLYTSH 485
           G   R           AL+     C  +++++I    V  +    + V +  L N ++ H
Sbjct: 412 GFAVRVHLLDNVHVGSALIDMYAKCGRINLSQI----VFNMMPTKNLVCWNSLMNGFSMH 467

Query: 486 GNW-DVASVMRNFMRER 501
           G   +V S+  + MR R
Sbjct: 468 GKAKEVMSIFESLMRTR 484


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 164/555 (29%), Positives = 282/555 (50%), Gaps = 68/555 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+ L  ++ A + L   +  + +H Y++K G+  + F + AL+  Y K+  LADA  +
Sbjct: 256 PNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISV 315

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +I QP +VSWN++I+G V    + +AL L  +++R                       
Sbjct: 316 FEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQ---------------------- 353

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA- 179
                +HS ++K  +E  + ++  L+DMY KC  +EDA   F  + +KD+I+WN++I+  
Sbjct: 354 -----LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGY 408

Query: 180 -------SARNGNLEL---AFGF-----------------------LHRLP-----NPDT 201
                   A +  +E+     GF                       +H L      + D 
Sbjct: 409 SQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDI 468

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+   +   +EDA  I       +  S+ S++T Y    +  EAL LF EMQ  
Sbjct: 469 YVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDM 528

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           ++  D +  S++L+  A LSA   G  +H  ++K G    I   ++L++MY+KCG ++ A
Sbjct: 529 ELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDA 588

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F  L  + +V+W+AMI G A++G   + ++LF Q+     + P+ +T ++VL AC+H
Sbjct: 589 GRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLK-EGVSPNHITLVSVLGACNH 647

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +   +   YFESM + +G KP  EH   MI L+G+ G++  A  ++ ++ F +   VW
Sbjct: 648 AGL-VTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVW 706

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL A+    D+++ R +A  +  LE +    +V+L N+Y S G W+  + +R  MR+ 
Sbjct: 707 GALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDS 766

Query: 502 GLRKEAGCSWIEVEN 516
            ++KE G SWIEV++
Sbjct: 767 KVKKEPGMSWIEVKD 781



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 139/457 (30%), Positives = 235/457 (51%), Gaps = 18/457 (3%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE+    +L+A S +      +Q+H  ++ SGF  +VFV+  L+  Y K +   D+ ++F
Sbjct: 156 NEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLF 215

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            EIP+ +VVSWN+L S YVQ     +A+ LF E+  S I  + +S +S + AC  L    
Sbjct: 216 DEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSS 275

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  IH  ++K   +     AN L+DMY K G + DAI VF ++   DI+SWN+VIA   
Sbjct: 276 RGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCV 335

Query: 182 RNGNLELAFGFLHRLP------------NPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
            + + E A   L ++               D      +++  ++   +EDA M  + +P 
Sbjct: 336 LHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPE 395

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            +  +WN+I++GY       EAL LF EM  + +  ++ T ST+L   AGL  +     +
Sbjct: 396 KDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQV 455

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H   +K G  + I V ++L+D Y KC  VE A+ +F      +LV++ +MIT YA+ G  
Sbjct: 456 HGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQG 515

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409
            + ++LF +++ + +L+PD     ++L AC++    F++  +    + K YG    +   
Sbjct: 516 EEALKLFLEMQDM-ELKPDRFVCSSLLNACANLS-AFEQGKQLHVHILK-YGFVLDIFAG 572

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVV-WRALL 445
            S++ +  + G +  A R   EL     G+V W A++
Sbjct: 573 NSLVNMYAKCGSIDDAGRAFSEL--TERGIVSWSAMI 607



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/451 (24%), Positives = 199/451 (44%), Gaps = 69/451 (15%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H +I KSG   +  +   L+  Y K      A K+  E  +P +VSW++LISGY Q+G
Sbjct: 77  QIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNG 136

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
               AL  F E+    +  + ++F+S L AC  +  L++G  +H  +V    E  V +AN
Sbjct: 137 LGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVAN 196

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------P 197
            L+ MY KC    D+  +F E+ +++++SWN++ +   +      A G  + +      P
Sbjct: 197 TLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKP 256

Query: 198 NP---------------------------------DTISYNEVINGIAQFGDIEDAIMIL 224
           N                                  D  S N +++  A+ GD+ DAI + 
Sbjct: 257 NEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVF 316

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             +  P+  SWN+++ G V      +AL L G+M+ +                       
Sbjct: 317 EKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQ----------------------- 353

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
               +HS ++K  +++ + V+  L+DMYSKC  +E A   F  L  K+L+ WNA+I+GY+
Sbjct: 354 ----LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYS 409

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           +  +  + + LF ++     +  +  T   +L + +   +    V      ++   G   
Sbjct: 410 QYWEDMEALSLFVEMHK-EGIGFNQTTLSTILKSTAGLQVV--HVCRQVHGLSVKSGFHS 466

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
            +    S+I   G+   V  A+R+  E   G
Sbjct: 467 DIYVVNSLIDSYGKCSHVEDAERIFEECTIG 497



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 152/335 (45%), Gaps = 45/335 (13%)

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
           P P ++     +  + +  +    LNL   +++      + S++  L+ C    SL+ G+
Sbjct: 23  PAPKLIQ---TVPQFSEDPQTTAILNL---IDKGNFTPTSVSYSKLLSQCCTTKSLRPGL 76

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN- 183
            IH+ I K  L     I N LI++Y KC     A  +  E  + D++SW+++I+  A+N 
Sbjct: 77  QIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNG 136

Query: 184 --GNLELAFGFLHRLP------------------------------------NPDTISYN 205
             G   +AF  +H L                                       D    N
Sbjct: 137 LGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVAN 196

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
            ++   A+  +  D+  +   +P  N  SWN++ + YV  +   EA+ LF EM    +  
Sbjct: 197 TLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKP 256

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           +E++ S+M++   GL   + G +IH  +IK G D     A+AL+DMY+K G +  A S+F
Sbjct: 257 NEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVF 316

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
             + + ++V+WNA+I G   +    + +EL  Q+K
Sbjct: 317 EKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK 351



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 1/112 (0%)

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           ++S +LS      +L  G+ IH+ + K GL     + + L+++YSKC     A  +    
Sbjct: 58  SYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDES 117

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
              +LV+W+A+I+GYA+NG     +  F ++  +  ++ +  TF +VL ACS
Sbjct: 118 SEPDLVSWSALISGYAQNGLGGGALMAFHEMHLL-GVKCNEFTFSSVLKACS 168


>gi|242038163|ref|XP_002466476.1| hypothetical protein SORBIDRAFT_01g008465 [Sorghum bicolor]
 gi|241920330|gb|EER93474.1| hypothetical protein SORBIDRAFT_01g008465 [Sorghum bicolor]
          Length = 599

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 164/510 (32%), Positives = 269/510 (52%), Gaps = 40/510 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E     LLR+   L   +  +Q+H +++ SGF S V++  +L+  Y     +  A  M
Sbjct: 125 PDEQTFLALLRSVERL---SAGRQVHAHVVVSGFHSRVYLRNSLIKMYIDAGDVETAELM 181

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F        VS N ++SGYV  G   KAL  F ++    I AD Y+  + L  CG+L ++
Sbjct: 182 FRSALVLDTVSCNIMLSGYVNEGCSLKALCFFRDMASRGIVADRYTAVALLTCCGRLKTV 241

Query: 121 QLGMAIHSKIVKYSLERG---VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
            LG ++H  IV+  ++ G   +++ N L+DMY KCG +  A  VFGE  +KD ISWN++ 
Sbjct: 242 LLGRSVHGVIVR-RMDAGDNWLILVNALLDMYAKCGRMNAAERVFGEASEKDGISWNTM- 299

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
                                         ++G A  G ++ A    S  PS +  SWN+
Sbjct: 300 ------------------------------VSGFANAGMLDLASRFFSEAPSRDLISWNA 329

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           +L GY       E + LF +M +  V  D+ T  T++S  AG  +L     IH  V+KQ 
Sbjct: 330 LLAGYARYKGFNEVMKLFHDMLASCVNPDKVTAVTLISVAAGKGSLNHAKSIHGWVVKQF 389

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
                 +ASAL+DM+ KCG V++A  +F     K++  W AMI+G A NG  T+ +ELF 
Sbjct: 390 GHQDAFLASALVDMHCKCGNVKVAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFW 449

Query: 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417
           +++T   + P+ VT L VL+ACSH  +  D+     ++M + Y I+P +EH   M+ L+ 
Sbjct: 450 KMQT-EAIAPNGVTLLAVLSACSHAGL-LDEGCRILDAMKQKYSIEPGIEHFGCMVDLLA 507

Query: 418 QKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477
           + G++  A  + R +       +W ++L+AS A  + +VA I++ E+++L+ + +  YV+
Sbjct: 508 RSGKLIDALALARRMPMRPSRSIWGSILNASLAGQNTEVAEIASKELLRLDPEDEGGYVL 567

Query: 478 LCNLYTSHGNWDVASVMRNFMRERGLRKEA 507
           L NLY + G+W+ +  +R  M+ +G++K A
Sbjct: 568 LSNLYAAGGHWNHSDEVRQNMKRKGVKKSA 597


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 158/519 (30%), Positives = 268/519 (51%), Gaps = 49/519 (9%)

Query: 6   LFHLLRASSDLGWDT----YCQ----QLHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
           +F  +   +D+ W+     Y Q    +  C + KS     +     L+G + K   + +A
Sbjct: 179 VFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEA 238

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
            + F  +    VVSWN++I+GY QSGK  +A  LF E        D +++T+ ++     
Sbjct: 239 RQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE----SPVQDVFTWTAMVS----- 289

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
           G +Q  M                              VE+A  +F +M +++ +SWN+++
Sbjct: 290 GYIQNRM------------------------------VEEARELFDKMPERNEVSWNAML 319

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
           A   +   +E+A      +P  +  ++N +I G AQ G I +A  +   MP  +  SW +
Sbjct: 320 AGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAA 379

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           ++ GY       EAL LF +M+ +   ++  +FS+ LS  A + AL  G  +H  ++K G
Sbjct: 380 MIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGG 439

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
            +    V +ALL MY KCG +E A+ +F+ +  K++V+WN MI GY+R+G     +  FE
Sbjct: 440 YETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFE 499

Query: 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417
            +K    L+PD  T + VL+ACSHT +  DK  +YF +MT+DYG+ P  +H   M+ L+G
Sbjct: 500 SMKR-EGLKPDDATMVAVLSACSHTGL-VDKGRQYFYTMTQDYGVMPNSQHYACMVDLLG 557

Query: 418 QKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477
           + G +  A  +++ + F     +W  LL AS    + ++A  +A ++  +E ++  +YV+
Sbjct: 558 RAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVL 617

Query: 478 LCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           L NLY S G W     +R  MR++G++K  G SWIE++N
Sbjct: 618 LSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQN 656



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 180/354 (50%), Gaps = 22/354 (6%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           Y +     +A ++F  +P+ S VS+N +ISGY+++G++  A  LF E+       D  S+
Sbjct: 74  YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPER----DLVSW 129

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
              +   G + +  LG A   ++ +   ER V   N ++  Y + G V+DA  VF  M +
Sbjct: 130 NVMIK--GYVRNRNLGKA--RELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPE 185

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           K+ +SWN++++A  +N  +E A        N   +S+N ++ G  +   I +A     SM
Sbjct: 186 KNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM 245

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
              +  SWN+I+TGY    ++ EA  LF E   +DV    +T++ M+SG      +    
Sbjct: 246 NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV----FTWTAMVSGYIQNRMVEEAR 301

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
            +   + ++    + V  +A+L  Y +  ++E+A  +F  +  +N+ TWN MITGYA+ G
Sbjct: 302 ELFDKMPER----NEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCG 357

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            +++   LF+++      + D V++  ++A  S +   F+ +   F  M ++ G
Sbjct: 358 KISEAKNLFDKMP-----KRDPVSWAAMIAGYSQSGHSFEAL-RLFVQMEREGG 405



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 133/283 (46%), Gaps = 27/283 (9%)

Query: 92  FVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS-----------KIVKYSLERGVV 140
           F  L+R+       S T  L  CG     +  +AI S           ++ K       V
Sbjct: 37  FHSLKRATQTQIQKSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSV 96

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
             N +I  Y + G  E A  +F EM ++D++SWN +I    RN NL  A      +P  D
Sbjct: 97  SYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERD 156

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
             S+N +++G AQ G ++DA  +   MP  N  SWN++L+ YV  +++ EA  LF   ++
Sbjct: 157 VCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSREN 216

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA----SIVVASALLDMYSKCG 316
             +     +++ +L G      +           +Q  D+     +V  + ++  Y++ G
Sbjct: 217 WAL----VSWNCLLGGFVKKKKIV--------EARQFFDSMNVRDVVSWNTIITGYAQSG 264

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           +++ A  +F     +++ TW AM++GY +N  + +  ELF+++
Sbjct: 265 KIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM 307


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 160/508 (31%), Positives = 259/508 (50%), Gaps = 41/508 (8%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGF--YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           Q+H   + +G  S+ FV++ ++ F       S+  A  +F  I +P +   N+LI  Y  
Sbjct: 53  QIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAF 112

Query: 82  SGKYRKALNLFVEL-ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           S     A+  + E+ E S ++ D ++F   L AC ++ SL+LG AIHS + K      V 
Sbjct: 113 SPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVS 172

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           ++N L+ MY  CG +E A  VF                                R P  D
Sbjct: 173 VSNFLVQMYASCGLIESAGLVFD-------------------------------RTPECD 201

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
             S+N +I G  + G  + A  +  +MP  +  SW+ ++ GYV  +R  E L LF +M  
Sbjct: 202 GASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMG 261

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           + +  +E      LS  A L A+  G  I   + ++ +  ++ + +AL+DMYSKCG VE 
Sbjct: 262 EKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVER 321

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  +  KN++ W+AMI G A NG     + LF Q++ ++ ++P+ VTF+ +L ACS
Sbjct: 322 ALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQME-MQGVKPNEVTFIGILNACS 380

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H+ +  D+   +F SMT  YG+KP   H C M+ L G+ G + +AQ +I+ + F     +
Sbjct: 381 HSKL-VDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAI 439

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W ALL+A     D ++       +++L+ +    YV+L N+Y + G WD  + +R  MRE
Sbjct: 440 WGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRE 499

Query: 501 RGLRKEAGCSWIEV-----ENVAAHSSN 523
           R + K  GCS+I++     E VA  SS+
Sbjct: 500 RQVSKTPGCSFIDLGDTIHEFVAGDSSH 527



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE VL + L A + LG     Q +  Y+ +      V + TAL+  Y K  S+  A ++
Sbjct: 266 PNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEV 325

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ + +V++W+++I+G   +G+ + ALNLF ++E   +  +  +F   L AC     +
Sbjct: 326 FHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLV 385

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIA 178
             G +  HS    Y L+       C++D+YG+ G ++ A  V   M  K +   W +++ 
Sbjct: 386 DEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLN 445

Query: 179 ASARNGNLELA 189
           A   +G+ EL 
Sbjct: 446 ACRIHGDTELG 456


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 140/495 (28%), Positives = 267/495 (53%), Gaps = 36/495 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGF-YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           Q++H  ++K+G   +   ++ ++ F       +  A+ +F +I  P++  WN++I G+ Q
Sbjct: 13  QKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIRGFSQ 72

Query: 82  SGKYRKALNLFVEL--ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
           S     A++LF+++            ++ S   A  QLG    G  +H +++K  LE   
Sbjct: 73  SSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQ 132

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            I N +++MY  CG + +A  +F      D+++WN++I                      
Sbjct: 133 FIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMII--------------------- 171

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                     G+A+ G+I+ +  +   M   N+ SWNS+++GYV + R  EA+ LF  MQ
Sbjct: 172 ----------GLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQ 221

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            + +   E+T  ++L+  A L AL  G  IH  ++K     + +V +A++DMYSKCG ++
Sbjct: 222 EEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSID 281

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F+S  +K L  WN++I G A +G   + + LF +L++  +L+PD V+F+ VL AC
Sbjct: 282 KALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLES-SNLKPDHVSFIGVLTAC 340

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +H  +  D+  +YF  M++ Y I+P+++H   M+ ++G+ G +  A+ +I+ +      +
Sbjct: 341 NHAGM-VDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAI 399

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W +LLS+     ++++A+ +A  V +L+ +    +++L N+Y +H +++ A   R  ++
Sbjct: 400 IWGSLLSSCREYGNIEMAKQAAKRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLK 459

Query: 500 ERGLRKEAGCSWIEV 514
           E+ + KE GCS IEV
Sbjct: 460 EKQMDKEPGCSLIEV 474



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+ +  LL A + LG     + +H YI+K+ F  N  V TA++  Y K  S+  A ++
Sbjct: 227 PSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQV 286

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F   P+  +  WNSLI G   SG+  +A+ LF +LE S +  D  SF   L AC   G +
Sbjct: 287 FKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMV 346

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
                    + + Y +E  +   +C++D+ G+ G +E+A  +   M ++ D I W S+++
Sbjct: 347 DRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLS 406

Query: 179 ASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAI 221
           +    GN+E+A     R+    PN ++ S+  + N  A     E+AI
Sbjct: 407 SCREYGNIEMAKQAAKRVNELDPN-ESSSFILLSNVYAAHNHFEEAI 452


>gi|8671867|gb|AAF78430.1|AC018748_9 Contains similarity to glycerine-rich protein from Nicotiana glauca
           gb|AF151215 and contains multiple PPR PF|01535 repeats
           [Arabidopsis thaliana]
          Length = 816

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 151/478 (31%), Positives = 260/478 (54%), Gaps = 9/478 (1%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYADAYS 106
           Y K+  + DA  +F  + + +V++W ++I GY ++G +     LF+ + +  ++  ++ +
Sbjct: 218 YCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNT 277

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
                 AC      + G  IH  + +  LE  + + N L+ MY K G + +A  VFG M 
Sbjct: 278 LAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMK 337

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
           +KD +SWNS+I    +   +  A+    ++P  D +S+ ++I G +  G+I   + +   
Sbjct: 338 NKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGM 397

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           MP  ++ +W ++++ +V+     EAL  F +M  K+V  + YTFS++LS  A L+ L  G
Sbjct: 398 MPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEG 457

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
           + IH  V+K  +   + V ++L+ MY KCG    A  +F  +   N+V++N MI+GY+ N
Sbjct: 458 LQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYN 517

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           G   K ++LF  L++    +P+ VTFL +L+AC H     D   +YF+SM   Y I+P  
Sbjct: 518 GFGKKALKLFSMLES-SGKEPNGVTFLALLSACVHVGY-VDLGWKYFKSMKSSYNIEPGP 575

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
           +H   M+ L+G+ G +  A  +I  +    +  VW +LLSAS     +D+A ++A ++I+
Sbjct: 576 DHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIE 635

Query: 467 LEGDSDYVYVMLCNLYTSHG-NWDVASVMRNFMRERGLRKEAGCSWI----EVENVAA 519
           LE DS   YV+L  LY+  G N D   +M N  + + ++K+ G SWI    EV N  A
Sbjct: 636 LEPDSATPYVVLSQLYSIIGKNRDCDRIM-NIKKSKRIKKDPGSSWIILKGEVHNFLA 692



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 109/469 (23%), Positives = 205/469 (43%), Gaps = 27/469 (5%)

Query: 34  FLSNVFVSTALMGFYRKIN------SLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRK 87
           FL     STA+     +I+      +L +A  +F ++   S+VSW ++IS Y ++GK  K
Sbjct: 40  FLETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSK 99

Query: 88  ALNLFVELERSEIYADAYSFTSALAACGQLG-SLQLGMAIHSKIVKYSLERGVVIANCLI 146
           A  +F E+      +     T+ +     LG + +L   I         E+  V    +I
Sbjct: 100 AWQVFDEMPVRVTTSYNAMITAMIKNKCDLGKAYELFCDIP--------EKNAVSYATMI 151

Query: 147 DMYGKCGSVEDAIGVFGEMIDK--DIISWNSVIAASARNGNLELAFGFLHRLPNPDTISY 204
             + + G  ++A  ++ E   K  D ++ N +++   R G    A      +   + +S 
Sbjct: 152 TGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSC 211

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDV 263
           + +++G  + G I DA  +   M   N  +W +++ GY       +   LF  M Q  DV
Sbjct: 212 SSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDV 271

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
            ++  T + M            G  IH  V +  L+  + + ++L+ MYSK G +  A +
Sbjct: 272 KVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKA 331

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F  +  K+ V+WN++ITG  +   +++  ELFE++        D V++ +++   S   
Sbjct: 332 VFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPG-----KDMVSWTDMIKGFSGKG 386

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
               K  E F  M +   I  T      +     ++   W  + + +E+   SY   + +
Sbjct: 387 -EISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSY--TFSS 443

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDY-VYVMLCNLYTSHGNWDVA 491
           +LSA+ + +DL         V+K+   +D  V   L ++Y   GN + A
Sbjct: 444 VLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDA 492



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 104/191 (54%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y    +L A++ L       Q+H  ++K   ++++ V  +L+  Y K  +  DA+K+
Sbjct: 436 PNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKI 495

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I +P++VS+N++ISGY  +G  +KAL LF  LE S    +  +F + L+AC  +G +
Sbjct: 496 FSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYV 555

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNSVIA 178
            LG     S    Y++E G     C++D+ G+ G ++DA  +   M  K     W S+++
Sbjct: 556 DLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLS 615

Query: 179 ASARNGNLELA 189
           AS  +  ++LA
Sbjct: 616 ASKTHLRVDLA 626



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 177/395 (44%), Gaps = 39/395 (9%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N   L  + +A  D        Q+H  + +     ++F+  +LM  Y K+  + +A  +F
Sbjct: 274 NSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVF 333

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA-----DAYSFTSALAACGQ 116
             +     VSWNSLI+G VQ  +  +A  LF ++   ++ +       +S    ++ C +
Sbjct: 334 GVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVE 393

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII----S 172
           L     GM           E+  +    +I  +   G  E+A+  F +M+ K++     +
Sbjct: 394 L----FGMMP---------EKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYT 440

Query: 173 WNSVIAASARNGNLELAFGFLHRLPNPDTIS----YNEVINGIAQFGDIEDAIMILSSMP 228
           ++SV++A+A   +L        R+   + ++     N +++   + G+  DA  I S + 
Sbjct: 441 FSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCIS 500

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI--AGLSALTWG 286
            PN  S+N++++GY       +AL LF  ++S     +  TF  +LS     G   L W 
Sbjct: 501 EPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWK 560

Query: 287 M---LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITG 342
               +  S  I+ G D      + ++D+  + G ++ A ++  ++ C+ +   W ++++ 
Sbjct: 561 YFKSMKSSYNIEPGPDH----YACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSA 616

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
            ++      + EL    K + +L+PDS T   VL+
Sbjct: 617 -SKTHLRVDLAEL--AAKKLIELEPDSATPYVVLS 648


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 162/553 (29%), Positives = 271/553 (49%), Gaps = 76/553 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++Y L  +LR  S LG     + +H Y++K+GF SNV+V   L+  Y K   +++A  +
Sbjct: 210 PSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEIL 269

Query: 61  F--VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           F  +   + + V W ++++GY Q+G   KA+  F  +    + ++ ++F S L AC  + 
Sbjct: 270 FKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVS 329

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           +   G  +H  IV+        + + L+DMY KCG +  A  V   M D D++SWNS+I 
Sbjct: 330 AHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIV 389

Query: 179 ASARNGNLE---LAFGFLH-RLPNPDTISYNEVINGI----------------------- 211
              R+G  E   L F  +H R    D  ++  V+N                         
Sbjct: 390 GCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLNCCIVGRIDGKSVHCLVIKTGFENYK 449

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     A+  D+  A  +   M   +  SW S++TGY       E+L  F +M+  
Sbjct: 450 LVSNALVDMYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRIS 509

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  D++  +++LS  A L+ L +G  +HS  IK GL +S+ V ++L+ MY+KCG ++ A
Sbjct: 510 GVSPDQFIVASILSACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDA 569

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           D++F S+  ++++TW A+I GYARNG     ++ F+Q+K +                   
Sbjct: 570 DAIFVSMHVRDVITWTALIVGYARNGKGRDSLKYFQQMKKI------------------- 610

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
                             YGI+P  EH   MI L G+ G++  A+ ++ ++       VW
Sbjct: 611 ------------------YGIEPGPEHYACMIDLFGRLGKLDEAKEILNQMDVKPDATVW 652

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           +ALL+A     +L++   +A  + +LE  +   YVML N+Y +   WD A+ +R  M+ +
Sbjct: 653 KALLAACRVHGNLELGERAATNLFELEPMNAMPYVMLSNMYLAARKWDDAAKIRRLMKSK 712

Query: 502 GLRKEAGCSWIEV 514
           G+ KE GCSWIE+
Sbjct: 713 GITKEPGCSWIEM 725



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 207/456 (45%), Gaps = 80/456 (17%)

Query: 9   LLRASSDLGWD---TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65
           LL AS  L  D   T  QQ+  + +   + S +F S  L+    K   + DA ++F ++ 
Sbjct: 84  LLSASPSLNEDSDDTGVQQVVMHNIADSYQS-IFHSNQLLNGLSKSGQIDDARELFDKML 142

Query: 66  QPSVVSWNS-------------------------------LISGYVQSGKYRKALNLFVE 94
           Q    +WN+                               LISGY + G+  +A +LF  
Sbjct: 143 QRDEYTWNTMVSGYANVGRLVEARELFNGFSSRSSITWSSLISGYCRFGRQAEAFDLFKR 202

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           +         Y+  S L  C  LG +Q G  IH  +VK   E  V +   L+DMY KC  
Sbjct: 203 MRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRH 262

Query: 155 VEDAIGVF-GEMIDK-DIISWNSVIAASARNGNLELA---FGFLH-------RLPNPDTI 202
           + +A  +F G   +K + + W +++   A+NG+   A   F ++H       +   P  +
Sbjct: 263 ISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSIL 322

Query: 203 S---------YNEVINGI--------------------AQFGDIEDAIMILSSMPSPNSS 233
           +         + E ++G                     A+ GD+  A  +L +M   +  
Sbjct: 323 TACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVV 382

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           SWNS++ G V      EA+ LF +M ++++ +D YTF ++L+    +     G  +H  V
Sbjct: 383 SWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLN--CCIVGRIDGKSVHCLV 440

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
           IK G +   +V++AL+DMY+K   +  A ++F  +  K++++W +++TGY +NG   + +
Sbjct: 441 IKTGFENYKLVSNALVDMYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESL 500

Query: 354 ELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIPFDK 388
           + F  ++ +  + PD     ++L+AC+  T + F K
Sbjct: 501 KTFCDMR-ISGVSPDQFIVASILSACAELTLLEFGK 535


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 162/553 (29%), Positives = 279/553 (50%), Gaps = 68/553 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +VL +L +  ++L      +Q+HC    SG   + FV  ++   Y +   + DA K+
Sbjct: 114 PDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKV 173

Query: 61  FVEIP-----------------------------------QPSVVSWNSLISGYVQSGKY 85
           F  +                                    + ++VSWN ++SG+ +SG +
Sbjct: 174 FDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYH 233

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
           ++A+ +F ++       D  + +S L + G    L +G  IH  ++K  L +   + + +
Sbjct: 234 KEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAM 293

Query: 146 IDMYGKCGSVEDAIGVFG--EMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS 203
           IDMYGK G V   I +F   EM++  +   N+ I   +RNG ++ A              
Sbjct: 294 IDMYGKSGHVYGIISLFNQFEMMEAGVC--NAYITGLSRNGLVDKA-------------- 337

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
                  +  F   ++  M L      N  SW SI+ G     +  EAL LF EMQ   V
Sbjct: 338 -------LEMFELFKEQTMEL------NVVSWTSIIAGCAQNGKDIEALELFREMQVAGV 384

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             +  T  +ML     ++AL  G   H   ++  L  ++ V SAL+DMY+KCG++ ++  
Sbjct: 385 KPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQI 444

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F  +  KNLV WN+++ G++ +G   +V+ +FE L   R L+PD ++F ++L+AC    
Sbjct: 445 VFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTR-LKPDFISFTSLLSACGQVG 503

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
           +  D+  +YF+ M+++YGIKP +EH   M+ L+G+ G++  A  +I+E+ F     VW A
Sbjct: 504 LT-DEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGA 562

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           LL++    +++D+A I+A ++  LE ++   YV+L N+Y + G W     +RN M   GL
Sbjct: 563 LLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGL 622

Query: 504 RKEAGCSWIEVEN 516
           +K  GCSWI+V+N
Sbjct: 623 KKNPGCSWIQVKN 635



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 133/497 (26%), Positives = 221/497 (44%), Gaps = 67/497 (13%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q H  ILKSG  ++ ++S  L+  Y   N   DA  +   IP P++ S++SLI    ++ 
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
            + +++ +F  +    +  D++   +    C +L + ++G  IH       L+    +  
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS 203
            +  MY +CG + DA  VF  M DKD+++ ++++ A AR G L                 
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCL----------------- 198

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPS----PNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                         E+ + ILS M S     N  SWN IL+G+       EA+ +F ++ 
Sbjct: 199 --------------EEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIH 244

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
                 D+ T S++L  +     L  G LIH  VIKQGL     V SA++DMY K G V 
Sbjct: 245 HLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVY 304

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
              S+F           NA ITG +RNG + K +E+FE  K  + ++ + V++ +++A C
Sbjct: 305 GIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKE-QTMELNVVSWTSIIAGC 363

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG--SY 437
           +      + + E F  M +  G+KP      SM+   G           I  LG G  ++
Sbjct: 364 AQNGKDIEAL-ELFREM-QVAGVKPNHVTIPSMLPACGN----------IAALGHGRSTH 411

Query: 438 GVVWR-----------ALLSASGACSDLDVARISAAEVIKLEGDSDYV-YVMLCNLYTSH 485
           G   R           AL+     C  +++++I    V  +    + V +  L N ++ H
Sbjct: 412 GFAVRVHLLDNVHVGSALIDMYAKCGRINLSQI----VFNMMPTKNLVCWNSLMNGFSMH 467

Query: 486 GNW-DVASVMRNFMRER 501
           G   +V S+  + MR R
Sbjct: 468 GKAKEVMSIFESLMRTR 484


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 152/518 (29%), Positives = 267/518 (51%), Gaps = 34/518 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    LL+A +        + +H +++K G   N  V+T+L+  Y      A A  +
Sbjct: 41  PDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARAL 100

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ-LGS 119
             E  + + V WN+LISG+ +  ++ +A   FV++ R+       ++ S L+ACG+  G 
Sbjct: 101 LSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGD 160

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           + LGM +H ++V   +   + + N L+DMY +C  +E A  +F  M  + ++SW S+++ 
Sbjct: 161 VLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLS- 219

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
                                         G+ + G +++A  +   MP  ++ SW +++
Sbjct: 220 ------------------------------GLTRLGRVDEARDLFGRMPERDTVSWTAMI 249

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            GYV   R  EAL +F EMQ  +V  DE+T  ++++  A L AL  G  +   + +QG+ 
Sbjct: 250 DGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIK 309

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
               V +AL+DMYSKCG +E A  +F+ +  ++  TW A+I G A NG   + IE+F ++
Sbjct: 310 MDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRM 369

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
             V +  PD VTF+ VL AC+H  +  DK  E+F SM + Y I P V H   +I L G+ 
Sbjct: 370 IGVSE-TPDEVTFIGVLTACTHAGL-VDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRA 427

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G++  A   I ++       +W  LL+A     + ++  +    +++++ ++  VY +L 
Sbjct: 428 GKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLS 487

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           N+Y     W+    +R+ + E+G++KE GCS IE+  +
Sbjct: 488 NIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGI 525



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 1/130 (0%)

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
           +A+  +  M ++    D YTF  +L  +A  S+      +H+ V+K G+  +  VA++L+
Sbjct: 26  DAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLV 85

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
             Y+  G    A ++     R   V WNA+I+G+ R     +    F  +       P  
Sbjct: 86  TAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARA-GAAPTP 144

Query: 370 VTFLNVLAAC 379
           VT+++VL+AC
Sbjct: 145 VTYVSVLSAC 154


>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
 gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
          Length = 834

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 163/533 (30%), Positives = 264/533 (49%), Gaps = 64/533 (12%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH + +K+ F S+  V TA++  Y K +SL DA + F  +P  +V + N+++ G V++
Sbjct: 265 RQLHAHAIKNKFSSDRVVGTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRT 324

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   +A+ LF  + RS I     S +   +AC ++    +                V + 
Sbjct: 325 GLGAEAMQLFQFMTRSGIGFGVVSLSGVFSACAEVKGFDVD---------------VCVR 369

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PN 198
           N ++D+YGKC ++ +A  VF EM  +D +SWN++IAA  +N   E     L+ +      
Sbjct: 370 NAILDLYGKCKALVEAYLVFQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGME 429

Query: 199 PDTISYNEVINGIA-----------------------------------QFGDIEDAIMI 223
            D  +Y  V+   A                                   + G I +A+ +
Sbjct: 430 ADDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKL 489

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +      SWNSI+ G+    +  EA   F EM    V  D +T++T+L   A L+ +
Sbjct: 490 HDRIGGQELVSWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATI 549

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH  +IKQ +     ++S L+DMY+KCG +  +  MF  + + + V+WNAMI GY
Sbjct: 550 ELGKQIHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQKLDFVSWNAMICGY 609

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A +G   + +E+FE+ +   ++ P+  TF+ VL ACSH  +  D    YF  MT  Y ++
Sbjct: 610 ALHGQGFEALEMFERTQKA-NVAPNHATFVAVLRACSHVGL-LDDGCRYFHLMTSRYKLE 667

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           P +EH       MG +     A + IR +   +  V+W+ LLS      D++VA  +A+ 
Sbjct: 668 PQLEH----FACMGPQ----EALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASN 719

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           V++L+ D   VY++L N+Y   G W   S  R  MR+  L+KE GCSWIEV++
Sbjct: 720 VLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQS 772



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 182/410 (44%), Gaps = 69/410 (16%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---------------- 66
           Q  H  +L SGF+  +FVS  L+  Y +    A AH +F  +P                 
Sbjct: 51  QAAHARMLVSGFVPTMFVSNCLLQMYARCGGAAHAHGVFDTMPHRDTVSWNTMLTAYAHM 110

Query: 67  ---------------PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSAL 111
                          P VVSWN+L+SGY Q G +R  + L +E+ R  +  D  +    L
Sbjct: 111 GDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVGLSIEMARCGVAPDRTTLAVLL 170

Query: 112 AACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII 171
            ACG L  L LG+ IH+  VK  LE  V   + L+DMYGKC S+EDA+  F  M +++ +
Sbjct: 171 KACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYGKCRSLEDALHFFHGMGERNSV 230

Query: 172 SWNSVIAASARNGNLELAFGFL-----------------HRLPNP---DTISYNEVINGI 211
           SW +VIA   +N         L                 H + N    D +    +++  
Sbjct: 231 SWGAVIAGCVQNEQYMRGLELLCRCKAITCLSTARQLHAHAIKNKFSSDRVVGTAIVDVY 290

Query: 212 AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271
           A+   + DA      +P+    + N+++ G V      EA+ LF  M             
Sbjct: 291 AKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFMTR----------- 339

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
              SGI G   ++   +  +C   +G D  + V +A+LD+Y KC  +  A  +F+ + ++
Sbjct: 340 ---SGI-GFGVVSLSGVFSACAEVKGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQR 395

Query: 332 NLVTWNAMITGYARNGDLT-KVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           + V+WN +I    +N      ++ L E L++   ++ D  T+ +VL AC+
Sbjct: 396 DSVSWNTIIAALEQNECYEDTIVHLNEMLRS--GMEADDFTYGSVLKACA 443



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 181/406 (44%), Gaps = 46/406 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  LL+A   L       Q+H   +K+G   +V   +AL+  Y K  SL DA   
Sbjct: 161 PDRTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYGKCRSLEDALHF 220

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + + + VSW ++I+G VQ+ +Y + L L                   L  C  +  L
Sbjct: 221 FHGMGERNSVSWGAVIAGCVQNEQYMRGLEL-------------------LCRCKAITCL 261

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
                +H+  +K       V+   ++D+Y K  S+ DA   F  + +  + + N+++   
Sbjct: 262 STARQLHAHAIKNKFSSDRVVGTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGL 321

Query: 181 ARNG----NLELAFGFLHRLP---------------------NPDTISYNEVINGIAQFG 215
            R G     ++L F F+ R                       + D    N +++   +  
Sbjct: 322 VRTGLGAEAMQL-FQFMTRSGIGFGVVSLSGVFSACAEVKGFDVDVCVRNAILDLYGKCK 380

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275
            + +A ++   M   +S SWN+I+          + +    EM    +  D++T+ ++L 
Sbjct: 381 ALVEAYLVFQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLK 440

Query: 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335
             AGL +L +G+++H   IK GL     V+S ++DMY KCG +  A  +   +  + LV+
Sbjct: 441 ACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRIGGQELVS 500

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           WN++I G++ N    +  + F ++  +  ++PD  T+  VL +C++
Sbjct: 501 WNSIIAGFSLNKQSEEAQKFFSEMLDM-GVKPDHFTYATVLDSCAN 545



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 120/259 (46%), Gaps = 33/259 (12%)

Query: 106 SFTSALAACGQLG--SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
           +F+     C   G  +L  G A H++++       + ++NCL+ MY +CG    A GVF 
Sbjct: 31  TFSHVYQLCASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYARCGGAAHAHGVFD 90

Query: 164 EMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMI 223
            M  +D +SWN+++ A A  G+  +A   L  +P+PD +S+N                  
Sbjct: 91  TMPHRDTVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWN------------------ 132

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
                        ++L+GY  R    + + L  EM    V  D  T + +L    GL  L
Sbjct: 133 -------------ALLSGYCQRGMFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDL 179

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G+ IH+  +K GL+  +   SAL+DMY KC  +E A   F  +  +N V+W A+I G 
Sbjct: 180 ALGVQIHALAVKTGLEMDVRAGSALVDMYGKCRSLEDALHFFHGMGERNSVSWGAVIAGC 239

Query: 344 ARNGDLTKVIELFEQLKTV 362
            +N    + +EL  + K +
Sbjct: 240 VQNEQYMRGLELLCRCKAI 258



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 144/314 (45%), Gaps = 25/314 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +++    +L+A + L    Y   +H   +KSG   + FVS+ ++  Y K   + +A K+ 
Sbjct: 431 DDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLH 490

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             I    +VSWNS+I+G+  + +  +A   F E+    +  D +++ + L +C  L +++
Sbjct: 491 DRIGGQELVSWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIE 550

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           LG  IH +I+K  +     I++ L+DMY KCG++ D+  +F ++   D +SWN++I   A
Sbjct: 551 LGKQIHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQKLDFVSWNAMICGYA 610

Query: 182 RNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
            +G    A     R       P+  ++  V+   +  G ++D       M S        
Sbjct: 611 LHGQGFEALEMFERTQKANVAPNHATFVAVLRACSHVGLLDDGCRYFHLMTS-------- 662

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
                  R ++   L  F  M     P +   F   +   A   A+ W  L+  C I+Q 
Sbjct: 663 -------RYKLEPQLEHFACMG----PQEALKFIRSMPLEA--DAVIWKTLLSICKIRQD 709

Query: 298 LDASIVVASALLDM 311
           ++ +   AS +L +
Sbjct: 710 VEVAETAASNVLRL 723



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 93/191 (48%), Gaps = 10/191 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    +L + ++L      +Q+H  I+K   L + F+S+ L+  Y K  ++ D+  M
Sbjct: 531 PDHFTYATVLDSCANLATIELGKQIHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLM 590

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ +   VSWN++I GY   G+  +AL +F   +++ +  +  +F + L AC  +G L
Sbjct: 591 FEKVQKLDFVSWNAMICGYALHGQGFEALEMFERTQKANVAPNHATFVAVLRACSHVGLL 650

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G    H    +Y LE  +         +  C   ++A+     M ++ D + W ++++
Sbjct: 651 DDGCRYFHLMTSRYKLEPQL--------EHFACMGPQEALKFIRSMPLEADAVIWKTLLS 702

Query: 179 ASARNGNLELA 189
                 ++E+A
Sbjct: 703 ICKIRQDVEVA 713



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%)

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           TG++ R+  P         Q+  +    ++    L   AG SAL  G   H+ ++  G  
Sbjct: 4   TGHITRSLSPGCPGRPTPAQAAFLATATFSHVYQLCASAGHSALATGQAAHARMLVSGFV 63

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
            ++ V++ LL MY++CG    A  +F ++  ++ V+WN M+T YA  GD
Sbjct: 64  PTMFVSNCLLQMYARCGGAAHAHGVFDTMPHRDTVSWNTMLTAYAHMGD 112


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 151/451 (33%), Positives = 238/451 (52%), Gaps = 29/451 (6%)

Query: 66  QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA 125
           +P+V++WN L+SG  +SG+ R A+   V +       DA   + AL+A G +G + +G  
Sbjct: 118 EPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQ 177

Query: 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN 185
           +H  +VK        +A  LIDMYGKCG  ++ + VF E    D+ S N+++A  +RN  
Sbjct: 178 LHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQ 237

Query: 186 LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245
           +  A                 V  GI                   N  SW SI+   V  
Sbjct: 238 VSEALRLFREF----------VGRGIEL-----------------NVVSWTSIVACCVQN 270

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
            R  EA+ LF EMQS+ +  +  T   +L   A ++AL  G   H   +++G    I V 
Sbjct: 271 GRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVG 330

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           SAL+DMY+KCG+V  A  +F ++  +N+V+WNAMI GYA +G+    + LF  +++ ++ 
Sbjct: 331 SALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKE- 389

Query: 366 QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425
           +PD VTF  VL ACS      +  S YF  M   +GI P +EH   M+ L+G+ G++  A
Sbjct: 390 KPDLVTFTCVLGACSQAGWTEEGRS-YFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDA 448

Query: 426 QRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485
             +I ++ F   G +W +LL +     ++ +A ++A  + +LE ++   YV+L N+Y S 
Sbjct: 449 YDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASK 508

Query: 486 GNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
             WD  + +R+ M+  GL+KE GCSWIE++N
Sbjct: 509 KMWDGVNRLRDMMKTVGLKKEKGCSWIEIKN 539



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 102/191 (53%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  +L A +++    + +  HC+ L+ GF  +++V +AL+  Y K   + DA  +
Sbjct: 290 PNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMI 349

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P  +VVSWN++I GY   G+   A+ LF  ++ S+   D  +FT  L AC Q G  
Sbjct: 350 FEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWT 409

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G +  +++  K+ +   +    C++ + G+ G ++DA  +  +M  + D   W S++ 
Sbjct: 410 EEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLG 469

Query: 179 ASARNGNLELA 189
           +   +GN+ LA
Sbjct: 470 SCRVHGNVVLA 480



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 127/275 (46%), Gaps = 38/275 (13%)

Query: 135 LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH 194
           + R   +A+ L+  Y + G+  DA  V   M  + ++ W+++IAA A +G+ E A+G L 
Sbjct: 51  VSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLE 110

Query: 195 RLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE 250
           R+ +    P+ I++N +++G+ + G   DA++ L                          
Sbjct: 111 RMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALV------------------------- 145

Query: 251 ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLD 310
                  M  +    D    S  LS +  +  +  G  +H  V+K G      VA+AL+D
Sbjct: 146 ------RMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALID 199

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370
           MY KCG+ +    +F      ++ + NA++ G +RN  +++ + LF +    R ++ + V
Sbjct: 200 MYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREF-VGRGIELNVV 258

Query: 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
           ++ +++A C       + V  + E  ++  GI+P 
Sbjct: 259 SWTSIVACCVQNGRDLEAVDLFREMQSE--GIEPN 291



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 146/346 (42%), Gaps = 62/346 (17%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKIN----------------- 52
           L A  D+G     +QLH Y++K+G   +  V+TAL+  Y K                   
Sbjct: 163 LSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDV 222

Query: 53  --------------SLADAHKMFVEIP----QPSVVSWNSLISGYVQSGKYRKALNLFVE 94
                          +++A ++F E      + +VVSW S+++  VQ+G+  +A++LF E
Sbjct: 223 ASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFRE 282

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           ++   I  ++ +    L A   + +L  G + H   ++      + + + L+DMY KCG 
Sbjct: 283 MQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGR 342

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVING 210
           V DA  +F  M  ++++SWN++I   A +G  E A      + +    PD +++  V+  
Sbjct: 343 VRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGA 402

Query: 211 IAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
            +Q G  E+     + M      SP    +  ++T      ++ +A  +  +M     P 
Sbjct: 403 CSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQM-----PF 457

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           +                  WG L+ SC +   +  + V A  L  +
Sbjct: 458 EP-------------DGCIWGSLLGSCRVHGNVVLAEVAAENLFQL 490


>gi|334183275|ref|NP_175765.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806499|sp|Q9C8L6.2|PPR80_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g53600, mitochondrial; Flags: Precursor
 gi|332194847|gb|AEE32968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 717

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 151/478 (31%), Positives = 260/478 (54%), Gaps = 9/478 (1%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYADAYS 106
           Y K+  + DA  +F  + + +V++W ++I GY ++G +     LF+ + +  ++  ++ +
Sbjct: 218 YCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNT 277

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
                 AC      + G  IH  + +  LE  + + N L+ MY K G + +A  VFG M 
Sbjct: 278 LAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMK 337

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
           +KD +SWNS+I    +   +  A+    ++P  D +S+ ++I G +  G+I   + +   
Sbjct: 338 NKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGM 397

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           MP  ++ +W ++++ +V+     EAL  F +M  K+V  + YTFS++LS  A L+ L  G
Sbjct: 398 MPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEG 457

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
           + IH  V+K  +   + V ++L+ MY KCG    A  +F  +   N+V++N MI+GY+ N
Sbjct: 458 LQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYN 517

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           G   K ++LF  L++    +P+ VTFL +L+AC H     D   +YF+SM   Y I+P  
Sbjct: 518 GFGKKALKLFSMLES-SGKEPNGVTFLALLSACVHVGY-VDLGWKYFKSMKSSYNIEPGP 575

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
           +H   M+ L+G+ G +  A  +I  +    +  VW +LLSAS     +D+A ++A ++I+
Sbjct: 576 DHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIE 635

Query: 467 LEGDSDYVYVMLCNLYTSHG-NWDVASVMRNFMRERGLRKEAGCSWI----EVENVAA 519
           LE DS   YV+L  LY+  G N D   +M N  + + ++K+ G SWI    EV N  A
Sbjct: 636 LEPDSATPYVVLSQLYSIIGKNRDCDRIM-NIKKSKRIKKDPGSSWIILKGEVHNFLA 692



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 109/469 (23%), Positives = 205/469 (43%), Gaps = 27/469 (5%)

Query: 34  FLSNVFVSTALMGFYRKIN------SLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRK 87
           FL     STA+     +I+      +L +A  +F ++   S+VSW ++IS Y ++GK  K
Sbjct: 40  FLETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSK 99

Query: 88  ALNLFVELERSEIYADAYSFTSALAACGQLG-SLQLGMAIHSKIVKYSLERGVVIANCLI 146
           A  +F E+      +     T+ +     LG + +L   I         E+  V    +I
Sbjct: 100 AWQVFDEMPVRVTTSYNAMITAMIKNKCDLGKAYELFCDIP--------EKNAVSYATMI 151

Query: 147 DMYGKCGSVEDAIGVFGEMIDK--DIISWNSVIAASARNGNLELAFGFLHRLPNPDTISY 204
             + + G  ++A  ++ E   K  D ++ N +++   R G    A      +   + +S 
Sbjct: 152 TGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSC 211

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDV 263
           + +++G  + G I DA  +   M   N  +W +++ GY       +   LF  M Q  DV
Sbjct: 212 SSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDV 271

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
            ++  T + M            G  IH  V +  L+  + + ++L+ MYSK G +  A +
Sbjct: 272 KVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKA 331

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F  +  K+ V+WN++ITG  +   +++  ELFE++        D V++ +++   S   
Sbjct: 332 VFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPG-----KDMVSWTDMIKGFSGKG 386

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
               K  E F  M +   I  T      +     ++   W  + + +E+   SY   + +
Sbjct: 387 -EISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSY--TFSS 443

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDY-VYVMLCNLYTSHGNWDVA 491
           +LSA+ + +DL         V+K+   +D  V   L ++Y   GN + A
Sbjct: 444 VLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDA 492



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 104/191 (54%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y    +L A++ L       Q+H  ++K   ++++ V  +L+  Y K  +  DA+K+
Sbjct: 436 PNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKI 495

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I +P++VS+N++ISGY  +G  +KAL LF  LE S    +  +F + L+AC  +G +
Sbjct: 496 FSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYV 555

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNSVIA 178
            LG     S    Y++E G     C++D+ G+ G ++DA  +   M  K     W S+++
Sbjct: 556 DLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLS 615

Query: 179 ASARNGNLELA 189
           AS  +  ++LA
Sbjct: 616 ASKTHLRVDLA 626



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 177/395 (44%), Gaps = 39/395 (9%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N   L  + +A  D        Q+H  + +     ++F+  +LM  Y K+  + +A  +F
Sbjct: 274 NSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVF 333

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA-----DAYSFTSALAACGQ 116
             +     VSWNSLI+G VQ  +  +A  LF ++   ++ +       +S    ++ C +
Sbjct: 334 GVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVE 393

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII----S 172
           L     GM           E+  +    +I  +   G  E+A+  F +M+ K++     +
Sbjct: 394 L----FGMMP---------EKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYT 440

Query: 173 WNSVIAASARNGNLELAFGFLHRLPNPDTIS----YNEVINGIAQFGDIEDAIMILSSMP 228
           ++SV++A+A   +L        R+   + ++     N +++   + G+  DA  I S + 
Sbjct: 441 FSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCIS 500

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI--AGLSALTWG 286
            PN  S+N++++GY       +AL LF  ++S     +  TF  +LS     G   L W 
Sbjct: 501 EPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWK 560

Query: 287 M---LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITG 342
               +  S  I+ G D      + ++D+  + G ++ A ++  ++ C+ +   W ++++ 
Sbjct: 561 YFKSMKSSYNIEPGPDH----YACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSA 616

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
            ++      + EL    K + +L+PDS T   VL+
Sbjct: 617 -SKTHLRVDLAEL--AAKKLIELEPDSATPYVVLS 648


>gi|12324033|gb|AAG51982.1|AC024260_20 hypothetical protein; 70922-66390 [Arabidopsis thaliana]
          Length = 839

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 151/478 (31%), Positives = 260/478 (54%), Gaps = 9/478 (1%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYADAYS 106
           Y K+  + DA  +F  + + +V++W ++I GY ++G +     LF+ + +  ++  ++ +
Sbjct: 218 YCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNT 277

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
                 AC      + G  IH  + +  LE  + + N L+ MY K G + +A  VFG M 
Sbjct: 278 LAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMK 337

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
           +KD +SWNS+I    +   +  A+    ++P  D +S+ ++I G +  G+I   + +   
Sbjct: 338 NKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGM 397

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           MP  ++ +W ++++ +V+     EAL  F +M  K+V  + YTFS++LS  A L+ L  G
Sbjct: 398 MPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEG 457

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
           + IH  V+K  +   + V ++L+ MY KCG    A  +F  +   N+V++N MI+GY+ N
Sbjct: 458 LQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYN 517

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           G   K ++LF  L++    +P+ VTFL +L+AC H     D   +YF+SM   Y I+P  
Sbjct: 518 GFGKKALKLFSMLES-SGKEPNGVTFLALLSACVHVGY-VDLGWKYFKSMKSSYNIEPGP 575

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
           +H   M+ L+G+ G +  A  +I  +    +  VW +LLSAS     +D+A ++A ++I+
Sbjct: 576 DHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIE 635

Query: 467 LEGDSDYVYVMLCNLYTSHG-NWDVASVMRNFMRERGLRKEAGCSWI----EVENVAA 519
           LE DS   YV+L  LY+  G N D   +M N  + + ++K+ G SWI    EV N  A
Sbjct: 636 LEPDSATPYVVLSQLYSIIGKNRDCDRIM-NIKKSKRIKKDPGSSWIILKGEVHNFLA 692



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 109/469 (23%), Positives = 205/469 (43%), Gaps = 27/469 (5%)

Query: 34  FLSNVFVSTALMGFYRKIN------SLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRK 87
           FL     STA+     +I+      +L +A  +F ++   S+VSW ++IS Y ++GK  K
Sbjct: 40  FLETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSK 99

Query: 88  ALNLFVELERSEIYADAYSFTSALAACGQLG-SLQLGMAIHSKIVKYSLERGVVIANCLI 146
           A  +F E+      +     T+ +     LG + +L   I         E+  V    +I
Sbjct: 100 AWQVFDEMPVRVTTSYNAMITAMIKNKCDLGKAYELFCDIP--------EKNAVSYATMI 151

Query: 147 DMYGKCGSVEDAIGVFGEMIDK--DIISWNSVIAASARNGNLELAFGFLHRLPNPDTISY 204
             + + G  ++A  ++ E   K  D ++ N +++   R G    A      +   + +S 
Sbjct: 152 TGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSC 211

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDV 263
           + +++G  + G I DA  +   M   N  +W +++ GY       +   LF  M Q  DV
Sbjct: 212 SSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDV 271

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
            ++  T + M            G  IH  V +  L+  + + ++L+ MYSK G +  A +
Sbjct: 272 KVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKA 331

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F  +  K+ V+WN++ITG  +   +++  ELFE++        D V++ +++   S   
Sbjct: 332 VFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPG-----KDMVSWTDMIKGFSGKG 386

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
               K  E F  M +   I  T      +     ++   W  + + +E+   SY   + +
Sbjct: 387 -EISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSY--TFSS 443

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDY-VYVMLCNLYTSHGNWDVA 491
           +LSA+ + +DL         V+K+   +D  V   L ++Y   GN + A
Sbjct: 444 VLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDA 492



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 104/191 (54%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y    +L A++ L       Q+H  ++K   ++++ V  +L+  Y K  +  DA+K+
Sbjct: 436 PNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKI 495

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I +P++VS+N++ISGY  +G  +KAL LF  LE S    +  +F + L+AC  +G +
Sbjct: 496 FSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYV 555

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNSVIA 178
            LG     S    Y++E G     C++D+ G+ G ++DA  +   M  K     W S+++
Sbjct: 556 DLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLS 615

Query: 179 ASARNGNLELA 189
           AS  +  ++LA
Sbjct: 616 ASKTHLRVDLA 626



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 177/395 (44%), Gaps = 39/395 (9%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N   L  + +A  D        Q+H  + +     ++F+  +LM  Y K+  + +A  +F
Sbjct: 274 NSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVF 333

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA-----DAYSFTSALAACGQ 116
             +     VSWNSLI+G VQ  +  +A  LF ++   ++ +       +S    ++ C +
Sbjct: 334 GVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVE 393

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII----S 172
           L     GM           E+  +    +I  +   G  E+A+  F +M+ K++     +
Sbjct: 394 L----FGMMP---------EKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYT 440

Query: 173 WNSVIAASARNGNLELAFGFLHRLPNPDTIS----YNEVINGIAQFGDIEDAIMILSSMP 228
           ++SV++A+A   +L        R+   + ++     N +++   + G+  DA  I S + 
Sbjct: 441 FSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCIS 500

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI--AGLSALTWG 286
            PN  S+N++++GY       +AL LF  ++S     +  TF  +LS     G   L W 
Sbjct: 501 EPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWK 560

Query: 287 M---LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITG 342
               +  S  I+ G D      + ++D+  + G ++ A ++  ++ C+ +   W ++++ 
Sbjct: 561 YFKSMKSSYNIEPGPDH----YACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSA 616

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
            ++      + EL    K + +L+PDS T   VL+
Sbjct: 617 -SKTHLRVDLAEL--AAKKLIELEPDSATPYVVLS 648


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 164/504 (32%), Positives = 263/504 (52%), Gaps = 36/504 (7%)

Query: 19  DTYC-QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLIS 77
           D  C   +H  +LK GF S+++VS AL+  Y     L  A K+F E+P+  +VSWNSL+ 
Sbjct: 92  DVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVC 151

Query: 78  GYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER 137
           GY Q  ++R+ L +F  +  + +  DA +    + AC  LG   +  A+   I + ++E 
Sbjct: 152 GYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEI 211

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
            V + N LIDMYG+ G V  A GVF      D + W +++                    
Sbjct: 212 DVYLGNTLIDMYGRRGLVHLARGVF------DQMQWRNLV-------------------- 245

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
                S+N +I G  + G++  A  +  +M   +  SW +++T Y    +  EAL LF E
Sbjct: 246 -----SWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKE 300

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M    V  DE T +++LS  A   +L  G   H  + K  + A I V +AL+DMY KCG 
Sbjct: 301 MMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGV 360

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL-QPDSVTFLNVL 376
           VE A  +F+ + +K+ V+W ++I+G A NG     ++ F ++  +R++ QP    F+ +L
Sbjct: 361 VEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRM--LREVVQPSHGAFVGIL 418

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
            AC+H  +  DK  EYFESM K YG+KP ++H   ++ L+ + G + RA   I+E+    
Sbjct: 419 LACAHAGL-VDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTP 477

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
             V+WR LLSAS    ++ +A I+  ++++L+  +   YV+  N Y     W+ A  MR 
Sbjct: 478 DVVIWRILLSASQVHGNIPLAEIATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMRE 537

Query: 497 FMRERGLRKEAGCSWIEVENVAAH 520
            M +  ++K +G S IE+E    H
Sbjct: 538 LMEKSNVQKPSGSSCIEMELQNGH 561



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 5/236 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +  +L A +  G     +  H YI K    ++++V  AL+  Y K   +  A ++
Sbjct: 308 PDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEV 367

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+ +   VSW S+ISG   +G    AL+ F  + R  +     +F   L AC   G +
Sbjct: 368 FKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLV 427

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G+     + K Y L+  +    C++D+  + G+++ A     EM +  D++ W  +++
Sbjct: 428 DKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLS 487

Query: 179 ASARNGNL---ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
           AS  +GN+   E+A   L  L   ++ +Y    N  A     EDA+ +   M   N
Sbjct: 488 ASQVHGNIPLAEIATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMRELMEKSN 543


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  264 bits (675), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 154/503 (30%), Positives = 268/503 (53%), Gaps = 9/503 (1%)

Query: 21  YCQQLHCYI-LKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79
           Y ++LH  I +     SN  +   LM  Y           +F EIP+ +VV +N +I  Y
Sbjct: 53  YLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSY 112

Query: 80  VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
           V +  Y  AL +F  +    I  D Y++   L A      L +GM IH+ +V+  L+  V
Sbjct: 113 VNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNV 172

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP-- 197
            + N LI MYGKCG + +A  V  +M  +D++SWNS++A  ARNG  + A      +   
Sbjct: 173 FVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELL 232

Query: 198 --NPDTISYNEVINGIAQ--FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
              PD  +   ++  +      ++     +   + + +  SWN ++  Y+N +   EA+ 
Sbjct: 233 GLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVD 292

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
           +F +M+   V  D  + +++L     LSAL  G  IH  V+++ L  ++++ +AL+DMY+
Sbjct: 293 IFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYA 352

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           KCG +E A  +F  +  +++V+W +MI+ Y  NG     + LF +++ +  L PDS+ F+
Sbjct: 353 KCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDL-GLNPDSIAFV 411

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
           +VL+ACSH  +  D+   YF+ MT++  I P +EH   M+ L+G+ G+V  A   I+++ 
Sbjct: 412 SVLSACSHAGL-LDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMP 470

Query: 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
                 VW ALLSA    S++ +  ++A ++ +L  +    YV+L N+Y   G W+  + 
Sbjct: 471 MEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTT 530

Query: 494 MRNFMRERGLRKEAGCSWIEVEN 516
           +R+ M+ +G++K  G S  E++N
Sbjct: 531 VRSIMKTKGIKKMPGVSNFELDN 553



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 130/277 (46%), Gaps = 24/277 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  +L A  DL      +++H Y+++     N+ +  AL+  Y K   L  A ++
Sbjct: 304 PDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREV 363

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++    VVSW S+IS Y  +GK R A++LF  ++   +  D+ +F S L+AC   G L
Sbjct: 364 FDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLL 423

Query: 121 QLG------MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISW 173
             G      M    KIV   +E  V    C++D+ G+ G V++A G   +M ++ +   W
Sbjct: 424 DEGRYYFKLMTEECKIVP-RIEHFV----CMVDLLGRAGQVDEAYGFIKQMPMEPNERVW 478

Query: 174 NSVIAASARNGNLELAFGFLHRLPN--PDTISYNEVINGI-AQFGDIEDAIMILSSMPS- 229
            ++++A     N+ +      +L    P+   Y  +++ I A+ G  ED   + S M + 
Sbjct: 479 GALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTK 538

Query: 230 -----PNSSSW---NSILTGYVNRNRVPEALHLFGEM 258
                P  S++   N + T        P++  ++ E+
Sbjct: 539 GIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEEL 575


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  264 bits (675), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 150/504 (29%), Positives = 264/504 (52%), Gaps = 40/504 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFV--EIPQPSVVSWNSLISGYV 80
           +Q+H +I+++G     +V T L+    K++    ++ + V  ++  P+   W ++I GY 
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK-IVKYSLERGV 139
             G   ++ N +  + R  +   +++F++   ACG   ++ LG  +H++ I+       +
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDL 178

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            + N +ID+Y KCG +  A  VF EM ++D++SW  +I A                    
Sbjct: 179 YVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVA-------------------- 218

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                       A++GD+E A  +   +P  +  +W +++TGY    R  EAL  F +MQ
Sbjct: 219 -----------YAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQ 267

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS--IVVASALLDMYSKCGQ 317
              +  DE T + ++S  A L A+     I     + G   S  +VV SAL+DMYSKCG 
Sbjct: 268 DVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGS 327

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVL 376
            + A  +F  +  +N+ ++++MI GYA +G     ++LF + LKT  +++P+ VTF+ +L
Sbjct: 328 PDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKT--EIRPNKVTFIGIL 385

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
           +ACSH  +  ++  + F  M K +G+ P+ +H   M+ L+G+ G +  A  +++ +    
Sbjct: 386 SACSHAGL-VEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEP 444

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
            G VW ALL A     + D+A+I+A E+ KLE +    Y++L N+Y S G W+  S +R 
Sbjct: 445 NGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRK 504

Query: 497 FMRERGLRKEAGCSWIEVENVAAH 520
            +RE+G +K  GCSW E +N   H
Sbjct: 505 VIREKGFKKNPGCSWFEGKNGEIH 528


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  264 bits (675), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 153/475 (32%), Positives = 257/475 (54%), Gaps = 10/475 (2%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
             ++  Y +   + +A  +F    +  V+SWN+L+SGYVQ GK  +A  LF  +      
Sbjct: 41  NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGR--- 97

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            D  S+   ++   + G     M    ++   +  R V     ++  Y + G +E+A  V
Sbjct: 98  -DVVSWNIMVSGYARRGD----MVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRV 152

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F  M +++ +SWN+++AA  +   ++ A    + +P  +  S+N ++ G AQ G +E+A 
Sbjct: 153 FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAK 212

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +  +MP  ++ SW ++L  Y       E L LF EM      ++   F+ +LS  A ++
Sbjct: 213 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 272

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL  GM +H  +I+ G      V +ALL MY KCG +E A + F  +  +++V+WN MI 
Sbjct: 273 ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIA 332

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYAR+G   + +E+F+ ++T    +PD +T + VLAACSH+ +  +K   YF SM  D+G
Sbjct: 333 GYARHGFGKEALEIFDMMRTT-STKPDDITLVGVLAACSHSGL-VEKGISYFYSMHHDFG 390

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           +    EH   MI L+G+ G +  A  +++++ F     +W ALL AS    + ++ R +A
Sbjct: 391 VTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAA 450

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++ +LE ++  +YV+L N+Y S G W  A  MR  M ERG++K  G SWIEV+N
Sbjct: 451 EKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQN 505



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 122/256 (47%), Gaps = 16/256 (6%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV     ++  Y +   L +A  +F  +PQ   VSW ++++ Y Q G   + L LF+E+ 
Sbjct: 191 NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG 250

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           R   + +  +F   L+ C  + +L+ GM +H ++++     G  + N L+ MY KCG++E
Sbjct: 251 RCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNME 310

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIA 212
           DA   F EM ++D++SWN++IA  AR+G  + A      +      PD I+   V+   +
Sbjct: 311 DARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACS 370

Query: 213 QFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
             G +E  I    SM      +     +  ++       R+ EA  L      KD+P + 
Sbjct: 371 HSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLM-----KDMPFE- 424

Query: 268 YTFSTMLSGIAGLSAL 283
              STM   + G S +
Sbjct: 425 -PDSTMWGALLGASRI 439



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 13/245 (5%)

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196
           R  V  N +I  +   G V  A   F    +KD +SWN ++AA  RNG +E A G  +  
Sbjct: 4   RDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR 63

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
              D IS+N +++G  Q+G + +A  +   MP  +  SWN +++GY  R  + EA  LF 
Sbjct: 64  TEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD 123

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
               +DV    +T++ ++SG A    L     +   + ++    + V  +A++  Y +  
Sbjct: 124 AAPVRDV----FTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRR 175

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            ++ A  +F  +  +N+ +WN M+TGYA+ G L +   +F+ +      Q D+V++  +L
Sbjct: 176 MMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP-----QKDAVSWAAML 230

Query: 377 AACSH 381
           AA S 
Sbjct: 231 AAYSQ 235



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 127/256 (49%), Gaps = 31/256 (12%)

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
           E+  V  N ++  Y + G VE+A G+F    + D+ISWN++++   + G +  A     R
Sbjct: 34  EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDR 93

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           +P  D +S+N +++G A+ GD+ +A  +  + P  +  +W ++++GY     + EA  +F
Sbjct: 94  MPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF 153

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS-----------IVV 304
             M  ++                   A++W  ++ + + ++ +D +           +  
Sbjct: 154 DAMPERN-------------------AVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS 194

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
            + +L  Y++ G +E A ++F ++ +K+ V+W AM+  Y++ G   + ++LF ++    +
Sbjct: 195 WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGE 254

Query: 365 LQPDSVTFLNVLAACS 380
               S  F  VL+ C+
Sbjct: 255 WVNRS-AFACVLSTCA 269



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 87/168 (51%), Gaps = 2/168 (1%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QLH  ++++G+    FV  AL+  Y K  ++ DA   F E+ +  VVSWN++I+GY + G
Sbjct: 279 QLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHG 338

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA-IHSKIVKYSLERGVVIA 142
             ++AL +F  +  +    D  +    LAAC   G ++ G++  +S    + +       
Sbjct: 339 FGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHY 398

Query: 143 NCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLELA 189
            C+ID+ G+ G + +A  +  +M  + D   W +++ AS  + N EL 
Sbjct: 399 TCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELG 446



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 116/262 (44%), Gaps = 26/262 (9%)

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           +P  D+++YN +I+  A  G +  A       P  ++ SWN +L  YV   RV EA  LF
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA-SALLDMYSK 314
                 DV     +++ ++SG      + WG +  +  +   +    VV+ + ++  Y++
Sbjct: 61  NSRTEWDV----ISWNALMSGY-----VQWGKMSEARELFDRMPGRDVVSWNIMVSGYAR 111

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFL 373
            G +  A  +F +   +++ TW A+++GYA+NG       + E+ + V D  P+ +    
Sbjct: 112 RGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNG-------MLEEARRVFDAMPERNAVSW 164

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
           N + A        D+  E F  M         V    +M+    Q G +  A+ +   + 
Sbjct: 165 NAMVAAYIQRRMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMP 219

Query: 434 FGSYGVVWRALLSA--SGACSD 453
                V W A+L+A   G CS+
Sbjct: 220 QKD-AVSWAAMLAAYSQGGCSE 240


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  264 bits (675), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 154/554 (27%), Positives = 282/554 (50%), Gaps = 44/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++     L A +DLG     +Q+H   +++GF  + ++ + L+  Y +  SL  A ++
Sbjct: 112 PNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEV 171

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +  P VV + SLIS + ++G++  A    +++ +  +  + ++ T+ L AC ++   
Sbjct: 172 FDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV--- 228

Query: 121 QLGMAIHSKIVKYSLERG--VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            LG  IH  ++K    R   V  +  LID Y + G  + A  VF  +  K+++SW S++ 
Sbjct: 229 -LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQ 287

Query: 179 ASARNGNLELAFGFLHRL------PNPDTISY---------------------------- 204
              R+G LE A      +      PN   +S                             
Sbjct: 288 LYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIR 347

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +++   + G +E+   +L+ + +P+  SW + ++         +A+ L  +M S+ 
Sbjct: 348 VSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEG 407

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
              + Y FS++LS  A +++L  GM  H   +K G D+ I   +AL++MYSKCGQ+  A 
Sbjct: 408 FTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSAR 467

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
             F  +   ++ +WN++I G+A++GD  K +E+F ++++   ++PD  TFL VL  C+H+
Sbjct: 468 LAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRS-NGIKPDDSTFLGVLMGCNHS 526

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  ++   +F  M   Y   P   H   MI ++G+ G    A RMI ++ F    ++W+
Sbjct: 527 GM-VEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWK 585

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
            LL++     +LD+ +++A  +++L       YV++ N+Y  HG W+ A  +R  M E G
Sbjct: 586 TLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETG 645

Query: 503 LRKEAGCSWIEVEN 516
           ++K+AGCSWIE+ N
Sbjct: 646 VKKDAGCSWIEINN 659



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 184/368 (50%), Gaps = 41/368 (11%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           K   LADA  +F  +P+ +VV+W S++SGY ++G+   AL +F ++  S +  + ++  +
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
           AL AC  LG+L+ G  +HS  V+        I +CLI+MY +CGS+  A  VF  M   D
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 170 IISWNSVIAASARNGNLELAFGFLHRL------PNPDTI--------------------- 202
           ++ + S+I+A  RNG  ELA   L ++      PN  T+                     
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIK 239

Query: 203 ----------SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEAL 252
                     S   +I+  ++ G+ + A  +  S+   N  SW S++  Y+   R+ EAL
Sbjct: 240 KIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEAL 299

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
            +FG+M S+ V  +E+  S +L G  G  ++  G  +H   IK  L   I V++ALL MY
Sbjct: 300 QVFGDMISEGVDPNEFALSIVL-GACG--SIGLGRQLHCSAIKHDLITDIRVSNALLSMY 356

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
            + G VE  ++M   +   +LV+W   I+   +NG   K I L  Q+ +     P+   F
Sbjct: 357 GRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHS-EGFTPNGYAF 415

Query: 373 LNVLAACS 380
            +VL++C+
Sbjct: 416 SSVLSSCA 423



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 101/203 (49%), Gaps = 13/203 (6%)

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
           AA+A NG  E          +PD +   + +N + + G + DA+ +   MP  N  +W S
Sbjct: 35  AAAADNGCAE----------SPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTS 84

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           +++GY    R   AL +F +M    V  +++  +  L   A L AL  G  +HS  ++ G
Sbjct: 85  VMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAG 144

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE-LF 356
                 + S L++MYS+CG +  A  +F  +   ++V + ++I+ + RNG+     E L 
Sbjct: 145 FAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALI 204

Query: 357 EQLKTVRDLQPDSVTFLNVLAAC 379
           + LK  + L+P+  T   +L AC
Sbjct: 205 QMLK--QGLKPNEHTMTTILTAC 225


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  264 bits (675), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 153/475 (32%), Positives = 257/475 (54%), Gaps = 10/475 (2%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
             ++  Y +   + +A  +F    +  V+SWN+L+SGYVQ GK  +A  LF  +      
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGR--- 222

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            D  S+   ++   + G     M    ++   +  R V     ++  Y + G +E+A  V
Sbjct: 223 -DVVSWNIMVSGYARRGD----MVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRV 277

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F  M +++ +SWN+++AA  +   ++ A    + +P  +  S+N ++ G AQ G +E+A 
Sbjct: 278 FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAK 337

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +  +MP  ++ SW ++L  Y       E L LF EM      ++   F+ +LS  A ++
Sbjct: 338 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 397

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL  GM +H  +I+ G      V +ALL MY KCG +E A + F  +  +++V+WN MI 
Sbjct: 398 ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIA 457

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYAR+G   + +E+F+ ++T    +PD +T + VLAACSH+ +  +K   YF SM  D+G
Sbjct: 458 GYARHGFGKEALEIFDMMRTT-STKPDDITLVGVLAACSHSGL-VEKGISYFYSMHHDFG 515

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           +    EH   MI L+G+ G +  A  +++++ F     +W ALL AS    + ++ R +A
Sbjct: 516 VTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAA 575

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++ +LE ++  +YV+L N+Y S G W  A  MR  M ERG++K  G SWIEV+N
Sbjct: 576 EKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQN 630



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 171/345 (49%), Gaps = 23/345 (6%)

Query: 38  VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER 97
           V  S   +  + +   +ADA ++F  +P+ S  ++N++++GY  +G+   A +LF  + R
Sbjct: 38  VIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR 97

Query: 98  SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED 157
                D YS+ + L A     SL     +  ++      R  V  N +I  +   G V  
Sbjct: 98  P----DNYSYNTLLHALAVSSSLADARGLFDEMPV----RDSVTYNVMISSHANHGLVSL 149

Query: 158 AIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDI 217
           A   F    +KD +SWN ++AA  RNG +E A G  +     D IS+N +++G  Q+G +
Sbjct: 150 ARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKM 209

Query: 218 EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277
            +A  +   MP  +  SWN +++GY  R  + EA  LF     +DV    +T++ ++SG 
Sbjct: 210 SEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGY 265

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVA-SALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
           A       GML  +  +   +     V+ +A++  Y +   ++ A  +F  +  +N+ +W
Sbjct: 266 A-----QNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 320

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           N M+TGYA+ G L +   +F+ +      Q D+V++  +LAA S 
Sbjct: 321 NTMLTGYAQAGMLEEAKAVFDTMP-----QKDAVSWAAMLAAYSQ 360



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 101/195 (51%), Gaps = 4/195 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV     ++  Y +   L +A  +F  +PQ   VSW ++++ Y Q G   + L LF+E+ 
Sbjct: 316 NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG 375

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           R   + +  +F   L+ C  + +L+ GM +H ++++     G  + N L+ MY KCG++E
Sbjct: 376 RCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNME 435

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIA 212
           DA   F EM ++D++SWN++IA  AR+G  + A      +      PD I+   V+   +
Sbjct: 436 DARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACS 495

Query: 213 QFGDIEDAIMILSSM 227
             G +E  I    SM
Sbjct: 496 HSGLVEKGISYFYSM 510



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 162/350 (46%), Gaps = 39/350 (11%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
            A++  Y     L  A  +F  IP+P   S+N+L+     S     A  LF E+      
Sbjct: 73  NAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMP----V 128

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            D+ ++   +++    G + L           + E+  V  N ++  Y + G VE+A G+
Sbjct: 129 RDSVTYNVMISSHANHGLVSLA----RHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGL 184

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F    + D+ISWN++++   + G +  A     R+P  D +S+N +++G A+ GD+ +A 
Sbjct: 185 FNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEAR 244

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +  + P  +  +W ++++GY     + EA  +F  M  ++                   
Sbjct: 245 RLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERN------------------- 285

Query: 282 ALTWGMLIHSCVIKQGLDAS-----------IVVASALLDMYSKCGQVEIADSMFRSLCR 330
           A++W  ++ + + ++ +D +           +   + +L  Y++ G +E A ++F ++ +
Sbjct: 286 AVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ 345

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           K+ V+W AM+  Y++ G   + ++LF ++    +    S  F  VL+ C+
Sbjct: 346 KDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRS-AFACVLSTCA 394



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 35/244 (14%)

Query: 135 LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH 194
           LE  V+ +N  I  + + G V DA  +F  M  +   ++N+++A  + NG L LA     
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 195 RLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
            +P PD  SYN +++ +A    + DA  +   MP  +S ++N +++ + N   V  A H 
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHY 153

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTW-GMLIHSCVIKQG------------LDAS 301
           F     KD                   A++W GML  +  ++ G             +  
Sbjct: 154 FDLAPEKD-------------------AVSWNGML--AAYVRNGRVEEARGLFNSRTEWD 192

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
           ++  +AL+  Y + G++  A  +F  +  +++V+WN M++GYAR GD+ +   LF+    
Sbjct: 193 VISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDA-AP 251

Query: 362 VRDL 365
           VRD+
Sbjct: 252 VRDV 255



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 2/167 (1%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QLH  ++++G+    FV  AL+  Y K  ++ DA   F E+ +  VVSWN++I+GY + G
Sbjct: 404 QLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHG 463

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA-IHSKIVKYSLERGVVIA 142
             ++AL +F  +  +    D  +    LAAC   G ++ G++  +S    + +       
Sbjct: 464 FGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHY 523

Query: 143 NCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLEL 188
            C+ID+ G+ G + +A  +  +M  + D   W +++ AS  + N EL
Sbjct: 524 TCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPEL 570


>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g42920, chloroplastic; Flags: Precursor
 gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
 gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  264 bits (675), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 155/506 (30%), Positives = 266/506 (52%), Gaps = 42/506 (8%)

Query: 19  DTYC------QQLHCYILKSGFLSNVFVSTALMGFY-RKINSLADAHKMFVEIPQPSVVS 71
           DT C      +Q+H  ++K+G +S+   ++ ++ F     + +  A+ +F  I   +   
Sbjct: 32  DTQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFV 91

Query: 72  WNSLISGYVQSGKYRKALNLFVEL--ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
           WN++I G+ +S     A+++F+++      +     ++ S   A G+LG  + G  +H  
Sbjct: 92  WNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGM 151

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
           ++K  LE    I N ++ MY  CG + +A  +F  MI  D+++WNS+I            
Sbjct: 152 VIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIM----------- 200

Query: 190 FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
                               G A+ G I+ A  +   MP  N  SWNS+++G+V   R  
Sbjct: 201 --------------------GFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFK 240

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
           +AL +F EMQ KDV  D +T  ++L+  A L A   G  IH  +++   + + +V +AL+
Sbjct: 241 DALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALI 300

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
           DMY KCG +E   ++F    +K L  WN+MI G A NG   + ++LF +L+    L+PDS
Sbjct: 301 DMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELER-SGLEPDS 359

Query: 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429
           V+F+ VL AC+H+     +  E+F  M + Y I+P+++H   M+ ++G  G +  A+ +I
Sbjct: 360 VSFIGVLTACAHSG-EVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALI 418

Query: 430 RELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD 489
           + +      V+W +LLSA     ++++A+ +A  + KL+ D    YV+L N Y S+G ++
Sbjct: 419 KNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFE 478

Query: 490 VASVMRNFMRERGLRKEAGCSWIEVE 515
            A   R  M+ER + KE GCS IEV+
Sbjct: 479 EAVEQRLLMKERQMEKEVGCSSIEVD 504



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 156/365 (42%), Gaps = 60/365 (16%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P       + +A   LG     +QLH  ++K G   + F+   ++  Y     L +A ++
Sbjct: 124 PQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRI 183

Query: 61  FVEIPQPSVVSWNS-------------------------------LISGYVQSGKYRKAL 89
           F+ +    VV+WNS                               +ISG+V++G+++ AL
Sbjct: 184 FLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDAL 243

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
           ++F E++  ++  D ++  S L AC  LG+ + G  IH  IV+   E   ++   LIDMY
Sbjct: 244 DMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMY 303

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYN 205
            KCG +E+ + VF     K +  WNS+I   A NG  E A      L      PD++S+ 
Sbjct: 304 CKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFI 363

Query: 206 EVINGIAQFGDIEDA-----IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            V+   A  G++  A     +M    M  P+   +  ++        + EA  L      
Sbjct: 364 GVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALI----- 418

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL--LDMYSKCGQV 318
           K++P++E T             + W  L+ +C     ++ +   A  L  LD    CG V
Sbjct: 419 KNMPVEEDT-------------VIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYV 465

Query: 319 EIADS 323
            ++++
Sbjct: 466 LLSNA 470



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 5/226 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + +  LL A + LG     + +H YI+++ F  N  V TAL+  Y K   + +   +
Sbjct: 256 PDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNV 315

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F   P+  +  WNS+I G   +G   +A++LF ELERS +  D+ SF   L AC   G +
Sbjct: 316 FECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEV 375

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
                    +  KY +E  +     ++++ G  G +E+A  +   M +++D + W+S+++
Sbjct: 376 HRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLS 435

Query: 179 ASARNGNLEL---AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           A  + GN+E+   A   L +L   +T  Y  + N  A +G  E+A+
Sbjct: 436 ACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAV 481


>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 769

 Score =  264 bits (675), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 169/558 (30%), Positives = 286/558 (51%), Gaps = 45/558 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +++A +  G     +QLH  ++K    S++    AL+  Y + N ++DA K+
Sbjct: 163 PDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKV 222

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLGS 119
           F  IP   ++SW+S+I+G+ Q G   +AL+   E L     + + Y F S+L AC  L  
Sbjct: 223 FYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLR 282

Query: 120 LQLGMAIHSKIVKYSLERGVVIANC-LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
              G  IH   +K  L  G  IA C L DMY +CG ++ A  VF ++   D  SWN +IA
Sbjct: 283 PDYGSQIHGLCIKLELT-GNAIAGCSLCDMYARCGFLDSARRVFNQIERPDTASWNVIIA 341

Query: 179 ASARNGNLELAFGFLHRLPN----PDTISYNEVING----------------IAQFGDIE 218
             A NG  + A      + N    PD IS   ++                  I + G + 
Sbjct: 342 GLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGMQIHSFIIKCGFLA 401

Query: 219 D-----AIMILSSMPS---------------PNSSSWNSILTGYVNRNRVPEALHLFGEM 258
           D     +++ + +  S                +S SWN+ILT  +   +  E L LF  M
Sbjct: 402 DLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQHEQPVEMLRLFKLM 461

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
              +   D  T   +L G   +S+L  G  +H    K GL     + + L+DMY+KCG +
Sbjct: 462 LVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGSL 521

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
             A  +F S+   ++V+W+ +I GYA++G   + + LF ++K+   ++P+ VTF+ VL A
Sbjct: 522 RQARRIFDSMDNGDVVSWSTLIVGYAQSGFGEEALILFREMKS-SGIEPNHVTFVGVLTA 580

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH  +  + +  Y   M  ++GI PT EHC  ++ L+ + G +  A+R I E+      
Sbjct: 581 CSHVGLVEEGLKLY-AIMQTEHGISPTKEHCSCVVDLLARAGHLNEAERFIDEMKLEPDV 639

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
           VVW+ LLSA     ++D+A+ +A  ++K++  +   +V+LC+++ S GNW+ A+++R+ M
Sbjct: 640 VVWKTLLSACKTQGNVDLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWEDAALLRSSM 699

Query: 499 RERGLRKEAGCSWIEVEN 516
           ++  ++K  G SWI+VE+
Sbjct: 700 KKHDVKKIPGQSWIDVED 717



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 205/401 (51%), Gaps = 48/401 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H +IL S    +  ++  ++  Y K  SL DA ++F  +P+ ++VS+ S+I+GY Q+
Sbjct: 84  RKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQN 143

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+  +A+ L++++ ++++  D ++F S + AC   G + LG  +H++++K      ++  
Sbjct: 144 GQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQ 203

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-------NLE--LAFGFL 193
           N LI MY +   + DA  VF  +  KD+ISW+S+IA  ++ G       +L+  L+FG  
Sbjct: 204 NALIAMYVRFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVF 263

Query: 194 H--------------RLPNPDTISYNEVINGI--------------------AQFGDIED 219
           H               L  PD   Y   I+G+                    A+ G ++ 
Sbjct: 264 HPNEYIFGSSLKACSSLLRPD---YGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDS 320

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
           A  + + +  P+++SWN I+ G  N     EA+ +F EM++     D  +  ++L     
Sbjct: 321 ARRVFNQIERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTK 380

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK-NLVTWNA 338
             AL  GM IHS +IK G  A + V ++LL MY+ C  +    ++F     K + V+WNA
Sbjct: 381 PMALCQGMQIHSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNA 440

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           ++T   ++    +++ LF +L  V + +PD +T  N+L  C
Sbjct: 441 ILTACLQHEQPVEMLRLF-KLMLVSECEPDHITMGNLLRGC 480



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 154/347 (44%), Gaps = 42/347 (12%)

Query: 73  NSLISGYVQSGKYRKALNLF-VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIV 131
           N  I+   ++  YR+AL  F    + S       ++ S + AC    SL  G  IH  I+
Sbjct: 32  NDHINSLCRNSFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHIL 91

Query: 132 KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LE 187
             + +   ++ N ++ MYGKCGS+ DA  VF  M +++++S+ SVI   ++NG     + 
Sbjct: 92  NSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQEAEAIT 151

Query: 188 LAFGFLHRLPNPDTISYNEVINGIAQFGDI------------------------------ 217
           L    L     PD  ++  +I   A  GD+                              
Sbjct: 152 LYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYV 211

Query: 218 -----EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV-PMDEYTFS 271
                 DA  +   +P+ +  SW+SI+ G+       EAL    EM S  V   +EY F 
Sbjct: 212 RFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFG 271

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
           + L   + L    +G  IH   IK  L  + +   +L DMY++CG ++ A  +F  + R 
Sbjct: 272 SSLKACSSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIERP 331

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           +  +WN +I G A NG   + + +F +++      PD+++  ++L A
Sbjct: 332 DTASWNVIIAGLANNGYADEAVSVFSEMRN-SGFIPDAISLRSLLCA 377


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  264 bits (675), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 153/473 (32%), Positives = 257/473 (54%), Gaps = 10/473 (2%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD 103
           ++  Y +   + +A  +F    +  V+SWN+L+SGYVQ GK  +A  LF  +       D
Sbjct: 168 MLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGR----D 223

Query: 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
             S+   ++   + G     M    ++   +  R V     ++  Y + G +E+A  VF 
Sbjct: 224 VVSWNIMVSGYARRGD----MVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFD 279

Query: 164 EMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMI 223
            M +++ +SWN+++AA  +   ++ A    + +P  +  S+N ++ G AQ G +E+A  +
Sbjct: 280 AMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAV 339

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
             +MP  ++ SW ++L  Y       E L LF EM      ++   F+ +LS  A ++AL
Sbjct: 340 FDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAAL 399

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             GM +H  +I+ G      V +ALL MY KCG +E A + F  +  +++V+WN MI GY
Sbjct: 400 ECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGY 459

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           AR+G   + +E+F+ ++T    +PD +T + VLAACSH+ +  +K   YF SM  D+G+ 
Sbjct: 460 ARHGFGKEALEIFDMMRTT-STKPDDITLVGVLAACSHSGL-VEKGISYFYSMHHDFGVT 517

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
              EH   MI L+G+ G +  A  +++++ F     +W ALL AS    + ++ R +A +
Sbjct: 518 AKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEK 577

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           + +LE ++  +YV+L N+Y S G W  A  MR  M ERG++K  G SWIEV+N
Sbjct: 578 IFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQN 630



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 171/345 (49%), Gaps = 23/345 (6%)

Query: 38  VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER 97
           V  S   +  + +   +ADA ++F  +P+ S  ++N++++GY  +G+   A +LF  + R
Sbjct: 38  VIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR 97

Query: 98  SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED 157
                D YS+ + L A     SL     +  ++      R  V  N +I  +   G V  
Sbjct: 98  P----DNYSYNTLLHALAVSSSLADARGLFDEMPV----RDSVTYNVMISSHANHGLVSL 149

Query: 158 AIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDI 217
           A   F    +KD +SWN ++AA  RNG +E A G  +     D IS+N +++G  Q+G +
Sbjct: 150 ARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKM 209

Query: 218 EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277
            +A  +   MP  +  SWN +++GY  R  + EA  LF     +DV    +T++ ++SG 
Sbjct: 210 SEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGY 265

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVA-SALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
           A       GML  +  +   +     V+ +A++  Y +   ++ A  +F  +  +N+ +W
Sbjct: 266 A-----QNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 320

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           N M+TGYA+ G L +   +F+ +      Q D+V++  +LAA S 
Sbjct: 321 NTMLTGYAQAGMLEEAKAVFDTMP-----QKDAVSWAAMLAAYSQ 360



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 101/195 (51%), Gaps = 4/195 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV     ++  Y +   L +A  +F  +PQ   VSW ++++ Y Q G   + L LF+E+ 
Sbjct: 316 NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG 375

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           R   + +  +F   L+ C  + +L+ GM +H ++++     G  + N L+ MY KCG++E
Sbjct: 376 RCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNME 435

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIA 212
           DA   F EM ++D++SWN++IA  AR+G  + A      +      PD I+   V+   +
Sbjct: 436 DARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACS 495

Query: 213 QFGDIEDAIMILSSM 227
             G +E  I    SM
Sbjct: 496 HSGLVEKGISYFYSM 510



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 162/350 (46%), Gaps = 39/350 (11%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
            A++  Y     L  A  +F  IP+P   S+N+L+     S     A  LF E+      
Sbjct: 73  NAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMP----V 128

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            D+ ++   +++    G + L           + E+  V  N ++  Y + G VE+A G+
Sbjct: 129 RDSVTYNVMISSHANHGLVSLA----RHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGL 184

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F    + D+ISWN++++   + G +  A     R+P  D +S+N +++G A+ GD+ +A 
Sbjct: 185 FNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEAR 244

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +  + P  +  +W ++++GY     + EA  +F  M  ++                   
Sbjct: 245 RLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERN------------------- 285

Query: 282 ALTWGMLIHSCVIKQGLDAS-----------IVVASALLDMYSKCGQVEIADSMFRSLCR 330
           A++W  ++ + + ++ +D +           +   + +L  Y++ G +E A ++F ++ +
Sbjct: 286 AVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ 345

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           K+ V+W AM+  Y++ G   + ++LF ++    +    S  F  VL+ C+
Sbjct: 346 KDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRS-AFACVLSTCA 394



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 35/244 (14%)

Query: 135 LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH 194
           LE  V+ +N  I  + + G V DA  +F  M  +   ++N+++A  + NG L LA     
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 195 RLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
            +P PD  SYN +++ +A    + DA  +   MP  +S ++N +++ + N   V  A H 
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHY 153

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTW-GMLIHSCVIKQG------------LDAS 301
           F     KD                   A++W GML  +  ++ G             +  
Sbjct: 154 FDLAPEKD-------------------AVSWNGML--AAYVRNGRVEEARGLFNSRTEWD 192

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
           ++  +AL+  Y + G++  A  +F  +  +++V+WN M++GYAR GD+ +   LF+    
Sbjct: 193 VISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDA-AP 251

Query: 362 VRDL 365
           VRD+
Sbjct: 252 VRDV 255



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 2/167 (1%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QLH  ++++G+    FV  AL+  Y K  ++ DA   F E+ +  VVSWN++I+GY + G
Sbjct: 404 QLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHG 463

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA-IHSKIVKYSLERGVVIA 142
             ++AL +F  +  +    D  +    LAAC   G ++ G++  +S    + +       
Sbjct: 464 FGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHY 523

Query: 143 NCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLEL 188
            C+ID+ G+ G + +A  +  +M  + D   W +++ AS  + N EL
Sbjct: 524 TCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPEL 570


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  264 bits (674), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 157/544 (28%), Positives = 283/544 (52%), Gaps = 41/544 (7%)

Query: 12  ASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVS 71
           A+ +LG +   +Q+H   +K+  + +VFV ++L+ FY K+  + +A K+F  +P+ ++VS
Sbjct: 121 AALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVS 180

Query: 72  WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIV 131
           W ++ISGY      ++AL +F  +   E   + + FTS L+A      +  G  +H  +V
Sbjct: 181 WTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVV 240

Query: 132 KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG 191
           K  +   V + N L+ MY KCG++  ++ +F    DK+ I+W+++I   ++ G+   A  
Sbjct: 241 KNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALK 300

Query: 192 FLHRL------PNPDTI---------------------------------SYNEVINGIA 212
              ++      P+  T+                                 +   +++  A
Sbjct: 301 LFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYA 360

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
           +FG   DA      +  P+   W SI+ GYV   +  EAL ++G MQ + +  +E T ++
Sbjct: 361 KFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMAS 420

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332
           +L   + L+AL  G  IH+  IK GL   + + SAL  MY+KCG +E    +FR + +++
Sbjct: 421 VLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRD 480

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           +V+WNAMI+G ++NG   + +ELFE+++ +   +PD +TF+ VL+ACSH  I   +   Y
Sbjct: 481 IVSWNAMISGLSQNGHGREALELFEEMR-LEGTKPDHITFVTVLSACSHMGI-VKRGWAY 538

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
           F  M  ++ + P VEH   M+ ++ + G++  A+  I          +WR LL A     
Sbjct: 539 FNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDHGMCLWRILLPACRNHC 598

Query: 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           + ++   +  ++++L       YV+L ++YT+ G       +R  M+ RG+RKE GCSWI
Sbjct: 599 NYELGAYAGEKLMELGSRESSAYVLLSSIYTAMGRLADVVRVRRMMKVRGVRKETGCSWI 658

Query: 513 EVEN 516
           E+++
Sbjct: 659 ELKS 662



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 130/222 (58%), Gaps = 4/222 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+ L  +L+A SD+      +Q H Y+LKSG+ + ++ +TAL+  Y K     DA K 
Sbjct: 312 PSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKG 371

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +P +V W S+I+GYVQ+GK  +AL+++  ++  +I  +  +  S L AC  L +L
Sbjct: 372 FDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAAL 431

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH++ +KY L   + I + L  MY KCGS+E+ + +F  M+ +DI+SWN++I+  
Sbjct: 432 EQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGL 491

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIE 218
           ++NG+   A      +      PD I++  V++  +  G ++
Sbjct: 492 SQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIVK 533



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 208/451 (46%), Gaps = 50/451 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNV-FVSTALMGFYRKINSLADAHK 59
           P     ++LL   +D       Q LH +I+K  +LS+  +++  L+ FY K   L  A  
Sbjct: 5   PQNRSFYNLLIQYADQKSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKL 64

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER----SEIYADAYSFTSAL-AAC 114
           +F  +   +VVS+N LI G   +G   K  N  +EL R    + I  DA++F     AA 
Sbjct: 65  VFENLKHKNVVSYNCLIHGLSHNGS--KGSNFVLELFRRMIANNILPDAHTFPGVFTAAA 122

Query: 115 GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN 174
             LG       +H   +K +    V + + L++ Y K G V +A  +F  M +++++SW 
Sbjct: 123 LNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWT 182

Query: 175 SVIAASARN-----------------GNL-ELAF-GFLHRLPNPDTISYNE------VIN 209
           ++I+  A                   GNL E  F   L  L  P+ +   +      V N
Sbjct: 183 TMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKN 242

Query: 210 GIAQF--------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           G+ +F              G++  ++M+       N+ +W++++TGY       +AL LF
Sbjct: 243 GVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLF 302

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
            +M        E+T   +L   + ++A+  G   H  ++K G +  I  A+AL+DMY+K 
Sbjct: 303 SKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKF 362

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G    A   F  L   +LV W ++I GY +NG   + + ++ +++ +R + P+ +T  +V
Sbjct: 363 GFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQ-MRKILPNELTMASV 421

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           L ACS  ++   +  +   + T  YG+ P +
Sbjct: 422 LKACS--NLAALEQGKQIHARTIKYGLGPEL 450



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 162/371 (43%), Gaps = 50/371 (13%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE+V   +L A     +    +Q+HC ++K+G L  V V  AL+  Y K  +L  +  +F
Sbjct: 212 NEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLF 271

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
                 + ++W++LI+GY Q+G   KAL LF ++  +      ++    L AC  + +++
Sbjct: 272 EMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIE 331

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G   H  ++K   E  +  A  L+DMY K G   DA   F  +++ D++ W S+IA   
Sbjct: 332 EGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYV 391

Query: 182 RNGNLELAFGFLHR------LPN------------------------PDTISY------- 204
           +NG  E A     R      LPN                          TI Y       
Sbjct: 392 QNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELS 451

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             + +    A+ G +E+ ++I   M   +  SWN++++G        EAL LF EM+ + 
Sbjct: 452 IRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEG 511

Query: 263 VPMDEYTFSTMLSGIAGLSALTWG------MLIHSCVIKQGLDASIVVASALLDMYSKCG 316
              D  TF T+LS  + +  +  G      M    C++ +     +   + ++D+ S+ G
Sbjct: 512 TKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPR-----VEHYACMVDVLSRAG 566

Query: 317 QVEIADSMFRS 327
           ++  A     S
Sbjct: 567 KLNEAKEFIES 577



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  +  +L+A S+L      +Q+H   +K G    + + +AL   Y K  SL +   +
Sbjct: 413 PNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLI 472

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + Q  +VSWN++ISG  Q+G  R+AL LF E+       D  +F + L+AC  +G +
Sbjct: 473 FRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIV 532

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIG-VFGEMIDKDIISWNSVIA 178
           + G A  + +  ++ L   V    C++D+  + G + +A   +   +ID  +  W  ++ 
Sbjct: 533 KRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDHGMCLWRILLP 592

Query: 179 ASARNGNLELA 189
           A   + N EL 
Sbjct: 593 ACRNHCNYELG 603



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 4/120 (3%)

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-QGLDASIVVASALLDMYSKCGQVEIAD 322
           P    +F  +L   A   +L  G ++H+ +IK   L +   +A+ L+  Y+KCG +  A 
Sbjct: 4   PPQNRSFYNLLIQYADQKSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAK 63

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTK--VIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            +F +L  KN+V++N +I G + NG      V+ELF ++    ++ PD+ TF  V  A +
Sbjct: 64  LVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRM-IANNILPDAHTFPGVFTAAA 122


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  264 bits (674), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 165/554 (29%), Positives = 271/554 (48%), Gaps = 70/554 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++    +LR  S        +Q+H + +K+ F SN FV T L+  Y K   + +A  +
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYL 195

Query: 61  FVEIP-QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F   P + + V W ++++GY Q+G   KA+  F ++    I  + ++F S L ACG + +
Sbjct: 196 FELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISA 255

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
              G  +H  IV+      V + + L+DMY KCG + +A  +   M   D +SWNS+I  
Sbjct: 256 CGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVG 315

Query: 180 SARNGNLELA---FGFLH-RLPNPDTISYNEVINGIAQFGDIEDAIMILS---------- 225
             R G  E A   F  +H R    D  +Y  V+N  +   D+ +A+ + S          
Sbjct: 316 CVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAY 375

Query: 226 -------------------------SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                                     M   +  SW S++TG V+     EAL LF EM+ 
Sbjct: 376 KLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRI 435

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             +  D+   + +LS  A L+ L +G  +H+  +K GL +S+ V ++L+ MY+KCG +E 
Sbjct: 436 MGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIED 495

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A+ +F S+  ++++TW A+I GYA+NG       L E  ++                   
Sbjct: 496 ANKVFDSMEIQDVITWTALIVGYAQNGRGRDHAGLVEHGRS------------------- 536

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
                      YF+SM + YGIKP  EH   MI L+G+ G++  A+ ++ ++       V
Sbjct: 537 -----------YFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATV 585

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W+ALL+A     ++++   +A  + +LE  +   YV+L NLY++ G W+ A+  R  M+ 
Sbjct: 586 WKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKL 645

Query: 501 RGLRKEAGCSWIEV 514
           RG+ KE GCSWIE+
Sbjct: 646 RGVSKEPGCSWIEM 659



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 190/388 (48%), Gaps = 42/388 (10%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
             ++G Y     L +A K+F E P  S ++W+SLISGY + G   +AL LF E++     
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            + +++ S L  C     L+ G  IH+  +K   +    +   L+DMY KC  + +A  +
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYL 195

Query: 162 FGEMIDK-DIISWNSVIAASARNGNLELA----------------FGFLHRLPNPDTISY 204
           F    DK + + W +++   ++NG+   A                F F   L    +IS 
Sbjct: 196 FELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISA 255

Query: 205 -----------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTG 241
                                  + +++  ++ GD+ +A  +L +M   +  SWNS++ G
Sbjct: 256 CGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVG 315

Query: 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
            V +    EAL LF  M  + + +DE+T+ ++L+  + +  +   M +HS ++K G +A 
Sbjct: 316 CVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAY 375

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
            +V +AL+DMY+K G  + A  +F  +  K++++W +++TG   NG   + + LF +++ 
Sbjct: 376 KLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMR- 434

Query: 362 VRDLQPDSVTFLNVLAACSH-TDIPFDK 388
           +  + PD +    VL+AC+  T + F K
Sbjct: 435 IMGIHPDQIVIAAVLSACAELTVLEFGK 462



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 130/275 (47%), Gaps = 35/275 (12%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
           +T +   C QL   +L   I   +           +N ++    KCG V+DA  +F  M 
Sbjct: 9   YTFSRKVCHQLEHTELNHHIRRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDARKLFDVMP 68

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFG-DIEDAIMILS 225
           D+D  SWN++I A A +G L  A    +  P    I+++ +I+G  ++G D+E       
Sbjct: 69  DRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVE------- 121

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
                                    AL LF EMQ +    +++T+ ++L   +    L  
Sbjct: 122 -------------------------ALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEK 156

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR-SLCRKNLVTWNAMITGYA 344
           G  IH+  IK   D++  V + L+DMY+KC  +  A+ +F  +  ++N V W AM+TGY+
Sbjct: 157 GKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYS 216

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           +NGD  K IE F  ++    ++ +  TF ++L AC
Sbjct: 217 QNGDGHKAIECFRDMRG-EGIECNQFTFPSILTAC 250


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  264 bits (674), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 162/533 (30%), Positives = 277/533 (51%), Gaps = 47/533 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + LH   + +G+ ++ FV++AL   Y K++   DA K+F  +P P  + WN+L++G   S
Sbjct: 134 RTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPGS 193

Query: 83  GKYRKALNLFVEL-ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
               +AL  FV + +   +  D+ +  S+L A  +   + +G  +H   VK  L     +
Sbjct: 194 ----EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHV 249

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP---- 197
              L+ +Y KCG ++ A  +F  M + D++++N++I+  + NG +E +      L     
Sbjct: 250 VTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGW 309

Query: 198 NPDTISYNEVINGIAQFG-----------------------------------DIEDAIM 222
            P++ +   VI   + FG                                   D+E A  
Sbjct: 310 RPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARS 369

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           I  +M      SWN++++GY        A+ LF  MQ  +V  +  T S+ LS  A L A
Sbjct: 370 IFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGA 429

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L+ G  +H  + K+ L+ ++ V +AL+DMY+KCG +  A S+F  +  KN+V+WNAMI+G
Sbjct: 430 LSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISG 489

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           Y  +G   + ++L++ +   R L P S TFL+V+ ACSH  +  D+  + F  MT +Y I
Sbjct: 490 YGLHGQGAEALKLYKDMLDARIL-PTSSTFLSVIYACSHGGL-VDEGQKVFRVMTNEYRI 547

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV-VWRALLSASGACSDLDVARISA 461
            P +EHC  M+ L+G+ G++  A  +I E    + G  VW ALL A     + D+A++++
Sbjct: 548 TPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLAS 607

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
            ++ +L+ ++   YV+L NLYTS  ++  A+V+R   + R L K  GC+ IE+
Sbjct: 608 QKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEI 660



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 157/323 (48%), Gaps = 26/323 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  ++   S  G +   + LH +++K+   ++  VSTAL   Y ++N +  A  +
Sbjct: 311 PNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSI 370

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + + ++ SWN++ISGY Q+G    A+ LF  ++   +  +  + +S L+AC  LG+L
Sbjct: 371 FDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGAL 430

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  +H  I K  LE  V +   LIDMY KCGS+ +A  +F  M +K+++SWN++I+  
Sbjct: 431 SLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGY 490

Query: 181 ARNGN----LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
             +G     L+L    L     P + ++  VI   +  G +++   +   M      +P 
Sbjct: 491 GLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPG 550

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
                 ++       ++ EAL L          + E+  S +  G+       WG L+ +
Sbjct: 551 IEHCTCMVDLLGRAGKLNEALEL----------ISEFPQSAIGPGV-------WGALLGA 593

Query: 292 CVIKQGLDASIVVASALLDMYSK 314
           C++ +  D + + +  L ++ S+
Sbjct: 594 CMVHKNSDLAKLASQKLFELDSE 616



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 95/403 (23%), Positives = 175/403 (43%), Gaps = 46/403 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L   LRA+++       + +H Y +K G   +  V T LM  Y K   +  A  +
Sbjct: 210 PDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFL 269

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +  P +V++N+LISGY  +G    ++ LF EL  S    ++ +  + +      G  
Sbjct: 270 FDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHE 329

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            L   +H+ +VK  L+   +++  L  +Y +   +E A  +F  M++K + SWN++I+  
Sbjct: 330 LLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGY 389

Query: 181 ARNGNLELA---FGFLHRL---PNPDTIS------------------------------- 203
           A+NG  E+A   F  +  L   PNP TIS                               
Sbjct: 390 AQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNV 449

Query: 204 --YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                +I+  A+ G I +A  I   M + N  SWN++++GY    +  EAL L+ +M   
Sbjct: 450 YVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDA 509

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEI 320
            +     TF +++   +    +  G  +   +  +  +   I   + ++D+  + G++  
Sbjct: 510 RILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNE 569

Query: 321 ADSMFRSLCRKNL--VTWNAMITG--YARNGDLTKVI--ELFE 357
           A  +     +  +    W A++      +N DL K+   +LFE
Sbjct: 570 ALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFE 612


>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 891

 Score =  264 bits (674), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 160/485 (32%), Positives = 268/485 (55%), Gaps = 13/485 (2%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL 95
            +V V TA++  Y K+N + +A ++F E+P  +VVSWN++I GY ++G+ ++AL+LF  +
Sbjct: 106 KSVIVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRM 165

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
               + +   +  +ALA CG++   +       ++     ER VV    ++    K G V
Sbjct: 166 PERNVVS-WNTVMTALAHCGRIDDAE-------RLFNEMRERDVVSWTTMVAGLSKNGRV 217

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFG 215
           + A  VF +M  ++++SWN++IA  A+NG  + A     R+P  D  S+N ++ G  Q G
Sbjct: 218 DAAREVFDKMPIRNVVSWNAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNG 277

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD-VPMDEYTFSTML 274
           D+  A  +  +MP  N  +W +++TGYV      EAL LF +MQ+ D +     TF T+L
Sbjct: 278 DLNRAEQLFHAMPQKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVL 337

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC--RKN 332
              + L+ L  G  IH  + K     S  V SAL++MYSKCG   +A  MF        +
Sbjct: 338 GACSDLAGLPEGQQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMD 397

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           L+ WN MI  YA +G   + I LF +++ +   Q + VT++ +L ACSH  + FD+  +Y
Sbjct: 398 LIAWNGMIAAYAHHGYGNEAINLFNKMQEL-GFQANDVTYVGLLTACSHAGL-FDEGFKY 455

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
           F+ + K+  I+   +H   +I L G+ G +  A  +I  LG      +W ALL+      
Sbjct: 456 FDELLKNRYIQVREDHYTCLIDLCGRAGRLDEALNIIEGLGKEVSLSLWGALLAGCSVHG 515

Query: 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           + D+ ++ A +V+K+E ++   Y++  N+Y S G  + A+ +R  M+++GL+K+ GCSWI
Sbjct: 516 NADIGKLVADKVLKMEPENADTYLLASNMYASVGMREEAANVRMKMKKKGLKKQPGCSWI 575

Query: 513 EVENV 517
           +V N 
Sbjct: 576 DVGNT 580



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 192/393 (48%), Gaps = 49/393 (12%)

Query: 56  DAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACG 115
           +A K+F E+ +     W ++ISGY++ G   +A  LF   +R +       +T+ ++   
Sbjct: 63  EARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLF---DRPDAQKSVIVWTAMVSGYI 119

Query: 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175
           ++  ++    + +++      R VV  N +ID Y + G  ++A+ +FG M +++++SWN+
Sbjct: 120 KMNRIEEAERLFNEMPV----RNVVSWNTMIDGYARNGRTQEALDLFGRMPERNVVSWNT 175

Query: 176 VIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSW 235
           V+ A A  G ++ A    + +   D +S+  ++ G+++ G ++ A  +   MP  N  SW
Sbjct: 176 VMTALAHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKMPIRNVVSW 235

Query: 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
           N+++ GY    R  EAL LF  M  +D+P    +++TM++G                   
Sbjct: 236 NAMIAGYAQNGRFDEALKLFERMPERDMP----SWNTMVTG------------------- 272

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
                           + + G +  A+ +F ++ +KN++TW AM+TGY ++G   + ++L
Sbjct: 273 ----------------FIQNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQHGLSEEALKL 316

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415
           F +++    L+P + TF+ VL ACS  D+      +    M      + +     ++I +
Sbjct: 317 FNKMQANDGLKPTTGTFVTVLGACS--DLAGLPEGQQIHQMISKTVFQESTYVVSALINM 374

Query: 416 MGQKGEVWRAQRMIRELGFGSYGVV-WRALLSA 447
             + G+   A++M  +   G   ++ W  +++A
Sbjct: 375 YSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAA 407



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 122/329 (37%), Gaps = 79/329 (24%)

Query: 35  LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE 94
           + NV    A++  Y +     +A K+F  +P+  + SWN++++G++Q+G   +A  LF  
Sbjct: 229 IRNVVSWNAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFHA 288

Query: 95  LERSEIYA--------------------------------DAYSFTSALAACGQLGSLQL 122
           + +  +                                     +F + L AC  L  L  
Sbjct: 289 MPQKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPE 348

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID--KDIISWNSVIAAS 180
           G  IH  I K   +    + + LI+MY KCG    A  +F + +    D+I+WN +IAA 
Sbjct: 349 GQQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAY 408

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           A +G     +G             NE IN   +  ++             N  ++  +LT
Sbjct: 409 AHHG-----YG-------------NEAINLFNKMQELG---------FQANDVTYVGLLT 441

Query: 241 GYVNRNRVPEALHLFGEMQSK---DVPMDEYTFSTMLSGIAG---------------LSA 282
              +     E    F E+       V  D YT    L G AG               +S 
Sbjct: 442 ACSHAGLFDEGFKYFDELLKNRYIQVREDHYTCLIDLCGRAGRLDEALNIIEGLGKEVSL 501

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDM 311
             WG L+  C +    D   +VA  +L M
Sbjct: 502 SLWGALLAGCSVHGNADIGKLVADKVLKM 530



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 12/197 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P       +L A SDL      QQ+H  I K+ F  + +V +AL+  Y K      A KM
Sbjct: 328 PTTGTFVTVLGACSDLAGLPEGQQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKM 387

Query: 61  FVE--IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           F +       +++WN +I+ Y   G   +A+NLF +++     A+  ++   L AC   G
Sbjct: 388 FDDGLSGHMDLIAWNGMIAAYAHHGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAG 447

Query: 119 SLQLGMAIHSKIVKYSLERGVVIA----NCLIDMYGKCGSVEDAIGVFGEMIDKDI--IS 172
               G     +++K    R + +      CLID+ G+ G +++A+ +  E + K++    
Sbjct: 448 LFDEGFKYFDELLK---NRYIQVREDHYTCLIDLCGRAGRLDEALNII-EGLGKEVSLSL 503

Query: 173 WNSVIAASARNGNLELA 189
           W +++A  + +GN ++ 
Sbjct: 504 WGALLAGCSVHGNADIG 520



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 72/361 (19%), Positives = 149/361 (41%), Gaps = 93/361 (25%)

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL------------------------- 239
           N  I+ + + G + +A  +   M   +S  W +++                         
Sbjct: 49  NYFISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFDRPDAQKSV 108

Query: 240 -------TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
                  +GY+  NR+ EA  LF EM  ++V     +++TM+ G A        + +   
Sbjct: 109 IVWTAMVSGYIKMNRIEEAERLFNEMPVRNV----VSWNTMIDGYARNGRTQEALDLFGR 164

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           + ++ + +   V +AL    + CG+++ A+ +F  +  +++V+W  M+ G ++NG +   
Sbjct: 165 MPERNVVSWNTVMTAL----AHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDAA 220

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412
            E+F+++  +R+     V   N + A    +  FD+  + FE M      +  +    +M
Sbjct: 221 REVFDKM-PIRN-----VVSWNAMIAGYAQNGRFDEALKLFERMP-----ERDMPSWNTM 269

Query: 413 IRLMGQKGEVWRAQRMIREL-------------GFGSYGVVWRAL--------------- 444
           +    Q G++ RA+++   +             G+  +G+   AL               
Sbjct: 270 VTGFIQNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPT 329

Query: 445 ----LSASGACSDL-------DVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
               ++  GACSDL        + ++ +  V +   +S YV   L N+Y+  G++ VA  
Sbjct: 330 TGTFVTVLGACSDLAGLPEGQQIHQMISKTVFQ---ESTYVVSALINMYSKCGDFHVAKK 386

Query: 494 M 494
           M
Sbjct: 387 M 387


>gi|356510733|ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 649

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 161/494 (32%), Positives = 270/494 (54%), Gaps = 29/494 (5%)

Query: 32  SGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNL 91
           +GFL N  V +A+ GF+R +             P+    S  +LISG V++G+   A  +
Sbjct: 173 TGFLLNGDVESAV-GFFRTM-------------PEHDSTSLCALISGLVRNGELDLAAGI 218

Query: 92  FVELERSEIYAD--AYSFTSALAACGQLGSLQLGMAIHSKIV---------KYSLERGVV 140
             E    +   D   +++ + +A  GQ G ++    +   I          K    R VV
Sbjct: 219 LRECGNGDDGKDDLVHAYNTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGKRRFRRNVV 278

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
             N ++  Y K G +  A  +F  M+++D  SWN++I+   +  N+E A      +P+PD
Sbjct: 279 SWNSMMMCYVKAGDIVFARELFDRMVERDNCSWNTLISCYVQISNMEEASKLFREMPSPD 338

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +S+N +I+G+AQ GD+  A      MP  N  SWN+I+ GY        A+ LF EMQ 
Sbjct: 339 VLSWNSIISGLAQKGDLNLAKDFFERMPHKNLISWNTIIAGYEKNEDYKGAIKLFSEMQL 398

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +    D++T S+++S   GL  L  G  +H  V K  L  S  + ++L+ MYS+CG +  
Sbjct: 399 EGERPDKHTLSSVISVSTGLVDLYLGKQLHQLVTKTVLPDS-PINNSLITMYSRCGAIVD 457

Query: 321 ADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           A ++F  +   K+++TWNAMI GYA +G   + +ELF+ +K ++ + P  +TF++VL AC
Sbjct: 458 ACTVFNEIKLYKDVITWNAMIGGYASHGSAAEALELFKLMKRLK-IHPTYITFISVLNAC 516

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +H  +  ++    F+SM  DYGI+P VEH  S++ ++G++G++  A  +I  + F     
Sbjct: 517 AHAGL-VEEGWRQFKSMINDYGIEPRVEHFASLVDILGRQGQLQEAMDLINTMPFKPDKA 575

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           VW ALL A    +++++A ++A  +I+LE +S   YV+L N+Y + G WD A  +R  M 
Sbjct: 576 VWGALLGACRVHNNVELALVAADALIRLEPESSAPYVLLYNMYANLGQWDDAESVRVLME 635

Query: 500 ERGLRKEAGCSWIE 513
           E+ ++K+AG SW++
Sbjct: 636 EKNVKKQAGYSWVD 649



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 107/465 (23%), Positives = 202/465 (43%), Gaps = 76/465 (16%)

Query: 54  LADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
           +++A  +F  + +   V+WNS+ISGYVQ  +  +A  LF E+ R ++ +     +   + 
Sbjct: 54  ISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEMPRRDVVSWNLIVSGYFSC 113

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISW 173
           CG    ++ G     ++ +   +R  V  N +I  Y K G ++ A+ +F  M + + +S+
Sbjct: 114 CGSR-FVEEG----RRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPEHNAVSY 168

Query: 174 NSVIAASARNGNLELAFGFLHRLPNPDTIS------------------------------ 203
           N+VI     NG++E A GF   +P  D+ S                              
Sbjct: 169 NAVITGFLLNGDVESAVGFFRTMPEHDSTSLCALISGLVRNGELDLAAGILRECGNGDDG 228

Query: 204 -------YNEVINGIAQFGDIEDAIMILSSMPSP-------------NSSSWNSILTGYV 243
                  YN +I G  Q G +E+A  +   +P               N  SWNS++  YV
Sbjct: 229 KDDLVHAYNTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMCYV 288

Query: 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV 303
               +  A  LF  M    V  D  +++T++S    +S     M   S + ++     ++
Sbjct: 289 KAGDIVFARELFDRM----VERDNCSWNTLISCYVQIS----NMEEASKLFREMPSPDVL 340

Query: 304 VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363
             ++++   ++ G + +A   F  +  KNL++WN +I GY +N D    I+LF +++ + 
Sbjct: 341 SWNSIISGLAQKGDLNLAKDFFERMPHKNLISWNTIIAGYEKNEDYKGAIKLFSEMQ-LE 399

Query: 364 DLQPDSVTFLNVLAACSH-TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422
             +PD  T  +V++  +   D+   K  +  + +TK   + P      S+I +  + G +
Sbjct: 400 GERPDKHTLSSVISVSTGLVDLYLGK--QLHQLVTKT--VLPDSPINNSLITMYSRCGAI 455

Query: 423 WRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
             A  +  E+      + W A++    +         SAAE ++L
Sbjct: 456 VDACTVFNEIKLYKDVITWNAMIGGYASHG-------SAAEALEL 493



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 147/325 (45%), Gaps = 28/325 (8%)

Query: 31  KSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALN 90
           K  F  NV    ++M  Y K   +  A ++F  + +    SWN+LIS YVQ     +A  
Sbjct: 270 KRRFRRNVVSWNSMMMCYVKAGDIVFARELFDRMVERDNCSWNTLISCYVQISNMEEASK 329

Query: 91  LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
           LF E+       D  S+ S ++   Q G L L      ++      + ++  N +I  Y 
Sbjct: 330 LFREMPS----PDVLSWNSIISGLAQKGDLNLAKDFFERMP----HKNLISWNTIIAGYE 381

Query: 151 KCGSVEDAIGVFGEM------IDKDIISWNSVIAASARNGNLELAFGF-LHRLPN----P 199
           K    + AI +F EM       DK  +S  SVI+ S   G ++L  G  LH+L      P
Sbjct: 382 KNEDYKGAIKLFSEMQLEGERPDKHTLS--SVISVST--GLVDLYLGKQLHQLVTKTVLP 437

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMP-SPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
           D+   N +I   ++ G I DA  + + +    +  +WN+++ GY +     EAL LF  M
Sbjct: 438 DSPINNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGSAAEALELFKLM 497

Query: 259 QSKDVPMDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           +   +     TF ++L+    AGL    W     S +   G++  +   ++L+D+  + G
Sbjct: 498 KRLKIHPTYITFISVLNACAHAGLVEEGWRQF-KSMINDYGIEPRVEHFASLVDILGRQG 556

Query: 317 QVEIADSMFRSLC-RKNLVTWNAMI 340
           Q++ A  +  ++  + +   W A++
Sbjct: 557 QLQEAMDLINTMPFKPDKAVWGALL 581


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 153/499 (30%), Positives = 265/499 (53%), Gaps = 42/499 (8%)

Query: 23  QQLHCYILKSGFL-SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           + +HC   K GF+  +V V  AL+  Y    SL DA K+F E+    VVSW +L+ GY +
Sbjct: 150 EAIHCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYAR 209

Query: 82  SGKYRKALNLFVELERSEI-YADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
            G   +A  +F  +  +   + +  +  +A +A GQ+G L LG  +H  +V+  +   V 
Sbjct: 210 GGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVN 269

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           + N L+DM+GKCG V  A  +F  M  KD+ SW S+++A                     
Sbjct: 270 LENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSA--------------------- 308

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                      A+ GD+E+A  +   +P+ N+ SW+ ++  Y   N   EA+ +F +M +
Sbjct: 309 ----------YAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIA 358

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC-VIKQGLDASIVVASALLDMYSKCGQVE 319
             V   + T  ++LS  A L  L  G  ++   ++   ++ ++ +++A +DM++KCG V 
Sbjct: 359 AGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVG 418

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +FR++  KN+V+WN MI  +A +G   + + LF++ K +  + PD +T++ VL+AC
Sbjct: 419 AASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAI-GIFPDEITYIGVLSAC 477

Query: 380 SHTDIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
           SH+ +    VSE   +F+ M   YGI+P  EH   MI L+G+ G +  A  + R +  G+
Sbjct: 478 SHSGL----VSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLEEAFEVARSMPVGA 533

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
               W ALL+A     ++++ + +A +++ L+     +YV++  +Y S   W    ++R 
Sbjct: 534 DEAGWGALLNACRMHGNVEIGKCAADKLVGLDPSDSGIYVLMSQIYASKSKWGQVKMIRT 593

Query: 497 FMRERGLRKEAGCSWIEVE 515
            MR+RG++K  GCS IEV+
Sbjct: 594 VMRDRGVKKNPGCSSIEVD 612



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 104/229 (45%), Gaps = 6/229 (2%)

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
           PN+    +++ G++   +   AL LF  +    +P D  T   + +  A  ++ +    I
Sbjct: 95  PNAYMLATMMRGFLRAGKPAHALALFRRVLRDRLPADARTI--VFAVKAATTSSSPAEAI 152

Query: 290 HSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           H    K+G +  S++V +AL+ MY+    +  A  +F  +  +++V+W  ++ GYAR G 
Sbjct: 153 HCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGL 212

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
             +   +F ++       P+ VT   V AA +   I    +         + G++ +V  
Sbjct: 213 PDEAWRVFCRMVVAGGGWPNEVTL--VAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNL 270

Query: 409 CCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
             +++ + G+ G V  A+ +   +        W +++SA   C DL+ A
Sbjct: 271 ENALVDMFGKCGCVASAKEIFDGMPIKDV-YSWTSMVSAYAKCGDLENA 318


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 163/524 (31%), Positives = 286/524 (54%), Gaps = 20/524 (3%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE + F+ L  SS      + + LH  ++ +G + ++F+ST L+  Y  +  ++ +   F
Sbjct: 17  NEEIDFNFLFDSSTK--TPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTF 74

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER-SEIYADAYSFTSALAACGQLGSL 120
            +IPQ  V +WNS+IS YV +G + +A+  F +L   SEI  D Y+F   L ACG L   
Sbjct: 75  DQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD- 133

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH    K   +  V +A  LI MY + G    A  +F +M  +D+ SWN++I+  
Sbjct: 134 --GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGL 191

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEV---------INGIAQFGDIEDAIMILSSMPSPN 231
            +NGN   A   L  +   + I  N V         ++  A+ G ++ A  +   +P  +
Sbjct: 192 IQNGNAAQALDVLDEM-RLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKD 250

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQS-KDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
             SWN+++TGY       EA+ ++  M+  K++  ++ T+ ++L   A + AL  GM IH
Sbjct: 251 VISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIH 310

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
             VIK  L   + VA+ L+D+Y KCG++  A S+F  + +++ VTWNA+I+ +  +G   
Sbjct: 311 GRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAE 370

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           K ++LF ++     ++PD VTF+++L+ACSH+   F +  ++   + ++YGIKP+++H  
Sbjct: 371 KTLKLFGEMLD-EGVKPDHVTFVSLLSACSHSG--FVEEGKWCFRLMQEYGIKPSLKHYG 427

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            M+ L+G+ G +  A   I+++       +W ALL A     ++++ + ++  + +++  
Sbjct: 428 CMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSK 487

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           +   YV+L N+Y + G W+    +R+  RERGL+K  G S IEV
Sbjct: 488 NVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEV 531



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 168/366 (45%), Gaps = 52/366 (14%)

Query: 30  LKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKAL 89
           +K  F++ V +    +  Y K+  L  AHK+F  IP   V+SWN+LI+GY Q+G   +A+
Sbjct: 212 IKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAI 271

Query: 90  NLFVELER-SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
            ++  +E   EI  +  ++ S L A   +G+LQ GM IH +++K +L   V +A CLID+
Sbjct: 272 EVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDV 331

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISY 204
           YGKCG + DA+ +F ++  +  ++WN++I+    +G+ E        + +    PD +++
Sbjct: 332 YGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTF 391

Query: 205 NEVINGIAQFGDIEDAIMILSSMP----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
             +++  +  G +E+       M      P+   +  ++   + R    E  + F     
Sbjct: 392 VSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVD-LLGRAGYLEMAYDF----I 446

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLD---------- 310
           KD+P+                A  WG L+ +C I   ++     +  L +          
Sbjct: 447 KDMPLQP-------------DASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYV 493

Query: 311 ----MYSKCGQVEIADSMFRSLCR----KNLVTWNAMITG------YARNGDLTKVIELF 356
               +Y+  G+ E  D + RSL R    K    W+ +         Y  N    K  E++
Sbjct: 494 LLSNIYANVGKWEGVDKV-RSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIY 552

Query: 357 EQLKTV 362
           E+L+ +
Sbjct: 553 EELRVL 558



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 97/190 (51%), Gaps = 1/190 (0%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+     +L A + +G      ++H  ++K+    +VFV+T L+  Y K   L DA  +
Sbjct: 285 PNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSL 344

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++PQ S V+WN++IS +   G   K L LF E+    +  D  +F S L+AC   G +
Sbjct: 345 FYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFV 404

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
           + G      + +Y ++  +    C++D+ G+ G +E A     +M +  D   W +++ A
Sbjct: 405 EEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGA 464

Query: 180 SARNGNLELA 189
              +GN+EL 
Sbjct: 465 CRIHGNIELG 474


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 157/519 (30%), Positives = 263/519 (50%), Gaps = 39/519 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      LL+AS  L   +   Q+HC+ + +G     ++   LM  Y +   +  A+++
Sbjct: 128 PNRSTFLFLLQASKFL---SQVMQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQV 184

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++  P  VS+N +I GY + G   +AL    E+    +  D ++    L  CG+LG  
Sbjct: 185 FQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDA 244

Query: 121 QLGMAIHSKIVKYSLER--GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           QLG ++H+ I +  L +   +++ N L+DMY KC  +  A  +F  ++ KD         
Sbjct: 245 QLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKD--------- 295

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
                                 TIS+N +I G A+ G++E A      MP  +  SWNSI
Sbjct: 296 ----------------------TISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSI 333

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           + GY  +        LF  M ++++  D  T   ++S  A + AL  G  IH  V++  +
Sbjct: 334 IAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQM 393

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
                + SA +DMY KCG ++ A  +FR +  K++  W  MITG+A +G  +K ++LF +
Sbjct: 394 KIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYE 453

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           ++    + P+ VTF+ VL ACSH+     +    F SM + YGI+P VEH   ++ L+G+
Sbjct: 454 MQEY--VMPNQVTFVAVLTACSHSGF-VSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGR 510

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G     + +I  +       +W A+LSA  A  ++++A I+  E++KLE + +  YV+L
Sbjct: 511 SGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGNIEIAEIAGKELLKLEPEKEGGYVLL 570

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
            N+Y + G W  +  +R  M  RG++K AGCS + V+ +
Sbjct: 571 SNIYATSGRWKHSDKIREIMESRGVKKTAGCSSVVVDGI 609



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 110/258 (42%), Gaps = 69/258 (26%)

Query: 176 VIAASARNGNLELA-FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIM--ILSSMPSPNS 232
           + +A     NL++A   F H  P+P+   YN +I+ ++   +   A    +LSS   PN 
Sbjct: 71  LFSAITHPENLDMAVLLFRHHTPHPNLYIYNTMISALSLSLNQSFAFYNSLLSSCIYPNR 130

Query: 233 SSW------------------NSILTG--------------YVNRNRVPEALHLFGEMQS 260
           S++                  ++I+TG              Y+   ++  A  +F +M +
Sbjct: 131 STFLFLLQASKFLSQVMQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAA 190

Query: 261 KD-------------------------------VPMDEYTFSTMLSGIAGLSALTWGMLI 289
            D                               +  DE+T   +L     L     G  +
Sbjct: 191 PDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSV 250

Query: 290 HSCVIKQGL--DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
           H+ + ++GL   +++++ +ALLDMY KC ++ IA S+F  + RK+ ++WN MI GYA+ G
Sbjct: 251 HAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVG 310

Query: 348 DLTKVIELFEQLKTVRDL 365
           +L      FE +   RDL
Sbjct: 311 NLEIAHNFFEDMPC-RDL 327


>gi|297847764|ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337605|gb|EFH68022.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 828

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 148/467 (31%), Positives = 254/467 (54%), Gaps = 5/467 (1%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYADAYS 106
           Y K+  + DA  +F  +P+ +V++W ++I GY ++G +     LF+ + +  ++  ++ +
Sbjct: 218 YCKMGRILDARSLFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNT 277

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
                 AC      + G  IH  + +  LE  + + N LI MY K G + +A  VFG M 
Sbjct: 278 LAVMFRACRDFFRYREGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVFGVMK 337

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
            KD +SWNS+I    +   +  A+    ++P  D +S+ ++I G +  G+I   + +   
Sbjct: 338 YKDSVSWNSLITGLVQREQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGM 397

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           MP  +  +W ++++ +V+     EAL  F +M  K V  + YTFS++LS  A L+ L  G
Sbjct: 398 MPEKDDITWTAMISAFVSNGYYEEALCWFHKMLRKQVCPNSYTFSSVLSATASLADLIEG 457

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
           + IH  V+K  +   + V ++L+ MY KCG    A  +F  +   N+V++N MI+G++ N
Sbjct: 458 LQIHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGFSYN 517

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           G   + ++LF  L++    +P+ VTFL +L+AC H     D   +YF+SM   YGI+P  
Sbjct: 518 GFGKEAVKLFSMLESTGK-EPNGVTFLALLSACVHVGY-VDLGWKYFKSMKFSYGIEPGP 575

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
           +H   M+ L G+ G +  A  +I  +    +  VW +LLSAS     +D+A ++A ++I+
Sbjct: 576 DHYACMVDLFGRSGLLDEAYNLISTMPCEPHSGVWGSLLSASKTHLRVDLAELAAKKLIE 635

Query: 467 LEGDSDYVYVMLCNLYTSHG-NWDVASVMRNFMRERGLRKEAGCSWI 512
           LE DS   YV+L  LY+  G N D   +M N  + + ++K+ G SWI
Sbjct: 636 LEPDSATPYVVLSQLYSMVGKNSDCDRIM-NIKKSKRIKKDPGSSWI 681



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 9/239 (3%)

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
           N  I    + G++++A  +F +M  + I+SWN++I+A A NG +  A+     +P   T 
Sbjct: 54  NSQISKLARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSKAWQVFDEMPVRATT 113

Query: 203 SYNEVING-IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           SYN +I   I    D+  A  +   +P  N+ S+ +++TG+V   R  EA  L+ E   K
Sbjct: 114 SYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAECLYAETPVK 173

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA-SALLDMYSKCGQVEI 320
               D    + +LSG   L    W   +    + +G+    VV+ S+++D Y K G++  
Sbjct: 174 F--RDPVASNVLLSGY--LRVGKWNEAVR---VFEGMAVKEVVSYSSMVDGYCKMGRILD 226

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           A S+F  +  +N++TW AMI GY + G       LF +++   D++ +S T   +  AC
Sbjct: 227 ARSLFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMFRAC 285



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 109/494 (22%), Positives = 208/494 (42%), Gaps = 77/494 (15%)

Query: 34  FLSNVFVSTALMGFYRKINSLA------DAHKMFVEIPQPSVVSWNSLISGYVQSGKYRK 87
           FL     STA+     +I+ LA      +A  +F ++   S+VSWN++IS Y ++GK  K
Sbjct: 40  FLETTTTSTAIFQCNSQISKLARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSK 99

Query: 88  ALNLFVEL-----------------------ERSEIYAD-----AYSFTSALAACGQLGS 119
           A  +F E+                       +  E++ D     A S+ + +    + G 
Sbjct: 100 AWQVFDEMPVRATTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGR 159

Query: 120 LQLGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
                 ++++  VK+   R  V +N L+  Y + G   +A+ VF  M  K+++S++S++ 
Sbjct: 160 FDEAECLYAETPVKF---RDPVASNVLLSGYLRVGKWNEAVRVFEGMAVKEVVSYSSMVD 216

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
              + G +  A     R+P  + I++  +I+G  + G  ED   +   M           
Sbjct: 217 GYCKMGRILDARSLFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRM----------- 265

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
                               Q  DV ++  T + M            G  IH  + +  L
Sbjct: 266 -------------------RQEGDVRVNSNTLAVMFRACRDFFRYREGSQIHGLLSRMPL 306

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
           +  + + ++L+ MYSK G +  A ++F  +  K+ V+WN++ITG  +   +++  ELFE+
Sbjct: 307 EFDLFLGNSLISMYSKLGYMGEAKAVFGVMKYKDSVSWNSLITGLVQREQISEAYELFEK 366

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           +        D V++ +++   S       K  E F  M +   I  T      +     +
Sbjct: 367 MPG-----KDMVSWTDMIKGFSGKG-EISKCVELFGMMPEKDDITWTAMISAFVSNGYYE 420

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY-VYVM 477
           +   W  + + +++   SY   + ++LSA+ + +DL         V+K+   +D  V   
Sbjct: 421 EALCWFHKMLRKQVCPNSY--TFSSVLSATASLADLIEGLQIHGRVVKMNMANDLSVQNS 478

Query: 478 LCNLYTSHGNWDVA 491
           L ++Y   GN + A
Sbjct: 479 LVSMYCKCGNTNDA 492



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 103/191 (53%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y    +L A++ L       Q+H  ++K    +++ V  +L+  Y K  +  DA+K+
Sbjct: 436 PNSYTFSSVLSATASLADLIEGLQIHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDAYKI 495

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I +P++VS+N++ISG+  +G  ++A+ LF  LE +    +  +F + L+AC  +G +
Sbjct: 496 FSCISEPNIVSYNTMISGFSYNGFGKEAVKLFSMLESTGKEPNGVTFLALLSACVHVGYV 555

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
            LG     S    Y +E G     C++D++G+ G +++A  +   M  +     W S+++
Sbjct: 556 DLGWKYFKSMKFSYGIEPGPDHYACMVDLFGRSGLLDEAYNLISTMPCEPHSGVWGSLLS 615

Query: 179 ASARNGNLELA 189
           AS  +  ++LA
Sbjct: 616 ASKTHLRVDLA 626



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/418 (20%), Positives = 166/418 (39%), Gaps = 85/418 (20%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N   L  + RA  D        Q+H  + +     ++F+  +L+  Y K+  + +A  +F
Sbjct: 274 NSNTLAVMFRACRDFFRYREGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVF 333

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +     VSWNSLI+G VQ  +  +A  LF ++       D  S+T             
Sbjct: 334 GVMKYKDSVSWNSLITGLVQREQISEAYELFEKMPGK----DMVSWTD------------ 377

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
                                  +I  +   G +   + +FG M +KD I+W ++I+A  
Sbjct: 378 -----------------------MIKGFSGKGEISKCVELFGMMPEKDDITWTAMISAFV 414

Query: 182 RNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDI-------------------- 217
            NG  E A  + H++      P++ +++ V++  A   D+                    
Sbjct: 415 SNGYYEEALCWFHKMLRKQVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNMANDLS 474

Query: 218 ---------------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                           DA  I S +  PN  S+N++++G+       EA+ LF  ++S  
Sbjct: 475 VQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGFSYNGFGKEAVKLFSMLESTG 534

Query: 263 VPMDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
              +  TF  +LS     G   L W     S     G++      + ++D++ + G ++ 
Sbjct: 535 KEPNGVTFLALLSACVHVGYVDLGWKYF-KSMKFSYGIEPGPDHYACMVDLFGRSGLLDE 593

Query: 321 ADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           A ++  ++ C  +   W ++++  ++      + EL    K + +L+PDS T   VL+
Sbjct: 594 AYNLISTMPCEPHSGVWGSLLSA-SKTHLRVDLAEL--AAKKLIELEPDSATPYVVLS 648


>gi|297818116|ref|XP_002876941.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322779|gb|EFH53200.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 652

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 168/546 (30%), Positives = 279/546 (51%), Gaps = 51/546 (9%)

Query: 15  DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNS 74
           DLG     +Q+H  ++K G+  NV+V ++L+  Y K   + DA   F+EI +P+ VSWN+
Sbjct: 64  DLG-----EQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWNA 118

Query: 75  LISGYVQSGKYRKALNLFVELE-RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY 133
           LI+G+VQ    + A  L   +E ++ +  D  +F   L          L   +H+K++K 
Sbjct: 119 LIAGFVQVRDTKTAFWLLGLMEMKAAVTMDDGTFAPLLTLLDDPMFCNLLKQVHAKVLKL 178

Query: 134 SLERGVVIANCLIDMYGKCGSVEDAIGVF-GEMIDKDIISWNSVIAASARNGNLELAFGF 192
            LE  + I N +I  Y  CG V DA  VF G    KD+ISWNS+IA  +++   E AF  
Sbjct: 179 GLEHEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAFEL 238

Query: 193 ---LHR-LPNPDTISY-----------------------------------NEVINGIAQ 213
              +HR     D  +Y                                   N +I+   Q
Sbjct: 239 FTEMHRNWIETDIYTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYIQ 298

Query: 214 F--GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271
           F  G ++DA+ +  S+   +  SWNSI+TG+       +A+  F  ++S ++ +D+Y FS
Sbjct: 299 FPTGVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAFS 358

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
            +L   + L+ L  G   H+   K   +++  V S+L+ MYSKCG +E A   F  +  K
Sbjct: 359 AVLRSCSDLATLQLGQQTHALATKSSFESNEFVTSSLILMYSKCGVIENARKCFEQISSK 418

Query: 332 -NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
            N + WNAMI GYA++G     ++LF Q+   ++++ D VTF  +L ACSHT +  + + 
Sbjct: 419 HNTIAWNAMILGYAQHGSGQVSLDLFSQMCN-QNVKLDHVTFTAILTACSHTGLIQEGL- 476

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450
           E   SM   Y I+P +EH  + + L+G+ G V + + +I  +      +V +  L    A
Sbjct: 477 ELLNSMEPVYKIQPRMEHYAAAVDLLGRAGLVNKVKELIESMPLNPDPMVLKTFLGVCRA 536

Query: 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCS 510
           C ++++A   A  ++++E +  + YV L ++Y+    W+  + ++  M+ERG++K  G S
Sbjct: 537 CGEIEMATQVANHLLEIEPEDHFAYVSLSHMYSDLKKWEEKANVKKMMKERGVKKVPGWS 596

Query: 511 WIEVEN 516
           WIE+ N
Sbjct: 597 WIEIRN 602



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 204/430 (47%), Gaps = 46/430 (10%)

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           ++F E+PQ   VSWN++ISGY   GK   +  LF +++R   Y D YSF+  L       
Sbjct: 2   RLFDEMPQRDSVSWNTMISGYTSCGKLENSWCLFTDMKRCGCYVDGYSFSRLLKGIASAK 61

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
              LG  +H  +VK   E  V + + L+DMY KC  VEDA G F E+++ + +SWN++IA
Sbjct: 62  RFDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWNALIA 121

Query: 179 ASARNGNLELAFGFLHRLPNPDTISY---------------------------------- 204
              +  + + AF  L  +     ++                                   
Sbjct: 122 GFVQVRDTKTAFWLLGLMEMKAAVTMDDGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLE 181

Query: 205 ------NEVINGIAQFGDIEDAIMILSSM-PSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
                 N +I+  A  G + DA  +   +  S +  SWNS++ G     +   A  LF E
Sbjct: 182 HEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAFELFTE 241

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK--C 315
           M    +  D YT++ ++S  +G    ++G  +H  VIK+GL+    V++AL+ MY +   
Sbjct: 242 MHRNWIETDIYTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYIQFPT 301

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G ++ A S+F SL  K+LV+WN+++TG+++NG     ++ F  L++  +++ D   F  V
Sbjct: 302 GVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRS-SNIEVDDYAFSAV 360

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L +CS  D+   ++ +   ++      +       S+I +  + G +  A++   ++   
Sbjct: 361 LRSCS--DLATLQLGQQTHALATKSSFESNEFVTSSLILMYSKCGVIENARKCFEQISSK 418

Query: 436 SYGVVWRALL 445
              + W A++
Sbjct: 419 HNTIAWNAMI 428



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 121/231 (52%), Gaps = 7/231 (3%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINS--LADAHKMF 61
           Y    ++ A S     ++ + LH  ++K G      VS AL+  Y +  +  + DA  +F
Sbjct: 252 YTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYIQFPTGVMKDALSLF 311

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +    +VSWNS+++G+ Q+G    A+  F  L  S I  D Y+F++ L +C  L +LQ
Sbjct: 312 ESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAFSAVLRSCSDLATLQ 371

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIAAS 180
           LG   H+   K S E    + + LI MY KCG +E+A   F ++  K + I+WN++I   
Sbjct: 372 LGQQTHALATKSSFESNEFVTSSLILMYSKCGVIENARKCFEQISSKHNTIAWNAMILGY 431

Query: 181 ARNGNLELAFGFLHRLPNP----DTISYNEVINGIAQFGDIEDAIMILSSM 227
           A++G+ +++     ++ N     D +++  ++   +  G I++ + +L+SM
Sbjct: 432 AQHGSGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNSM 482



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 109/225 (48%), Gaps = 2/225 (0%)

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           +   MP  +S SWN++++GY +  ++  +  LF +M+     +D Y+FS +L GIA    
Sbjct: 3   LFDEMPQRDSVSWNTMISGYTSCGKLENSWCLFTDMKRCGCYVDGYSFSRLLKGIASAKR 62

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
              G  +H  V+K G + ++ V S+L+DMY+KC +VE A   F  +   N V+WNA+I G
Sbjct: 63  FDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWNALIAG 122

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           + +  D      L   ++    +  D  TF  +L      D  F  + +   +     G+
Sbjct: 123 FVQVRDTKTAFWLLGLMEMKAAVTMDDGTFAPLLTLLD--DPMFCNLLKQVHAKVLKLGL 180

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
           +  +  C +MI      G V  A+R+   LG     + W ++++ 
Sbjct: 181 EHEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAG 225



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 3/191 (1%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           ++Y    +LR+ SDL      QQ H    KS F SN FV+++L+  Y K   + +A K F
Sbjct: 353 DDYAFSAVLRSCSDLATLQLGQQTHALATKSSFESNEFVTSSLILMYSKCGVIENARKCF 412

Query: 62  VEI-PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            +I  + + ++WN++I GY Q G  + +L+LF ++    +  D  +FT+ L AC   G +
Sbjct: 413 EQISSKHNTIAWNAMILGYAQHGSGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLI 472

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           Q G+ + + +   Y ++  +      +D+ G+ G V     +   M ++ D +   + + 
Sbjct: 473 QEGLELLNSMEPVYKIQPRMEHYAAAVDLLGRAGLVNKVKELIESMPLNPDPMVLKTFLG 532

Query: 179 ASARNGNLELA 189
                G +E+A
Sbjct: 533 VCRACGEIEMA 543


>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 923

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 165/536 (30%), Positives = 269/536 (50%), Gaps = 49/536 (9%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H   + SG   +V +  AL+  Y     L +A  +F  + +  V+SWN++IS YVQS  
Sbjct: 268 IHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNS 327

Query: 85  YRKALNLFVEL-ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
             +AL    +L +  E   ++ +F+SAL AC    +L  G  IH+ I++ SL+  ++I N
Sbjct: 328 CVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGN 387

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA-------------- 189
            L+ MY KC S+ED   VF  M   D++S N +    A   ++  A              
Sbjct: 388 SLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKP 447

Query: 190 --------------FGFLHRLPNP------------DTISYNEVINGIAQFGDIEDAIMI 223
                          G LH    P            D    N +I   A  GD+E +  I
Sbjct: 448 NYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGI 507

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
            S + + +  SWN+I+   V   R  EA+ LF + Q     +D +  +  LS  A L++L
Sbjct: 508 FSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASL 567

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL---CRKNLVTWNAMI 340
             GM +H   +K GLD    V +A +DMY KCG++   D M ++L     +    WN +I
Sbjct: 568 EEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKM---DCMLKTLPDPAHRPTQCWNTLI 624

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           +GYAR G   +  + F+ + +V   +PD VTF+ +L+ACSH  +  DK  +Y+ SM   +
Sbjct: 625 SGYARYGYFKEAEDTFKHMVSVGQ-KPDYVTFVALLSACSHAGL-IDKGMDYYNSMAPTF 682

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
           G+ P ++HC  ++ L+G+ G+   A++ I E+      ++WR+LLS+S    +LD+ R +
Sbjct: 683 GVSPGIKHCVCIVDLLGRLGKFAEAEKFIDEMPVLPNDLIWRSLLSSSRTHKNLDIGRKA 742

Query: 461 AAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           A  +++L+   D  YV+L NLY ++  W     +R+ M+   L K   CSW++++N
Sbjct: 743 AKNLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMKTIKLNKRPACSWLKLKN 798



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 197/419 (47%), Gaps = 44/419 (10%)

Query: 4   YVLFHLLRASSDLGWD--TYC-QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           + L  L+ A    GW     C   +H    ++G + NV++ TAL+  Y     + +A ++
Sbjct: 42  FALASLVTACEHRGWQEGAACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRL 101

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+PQ +VVSW +++     +G   +AL  +  + +  +  +A +  + ++ CG L   
Sbjct: 102 FWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDE 161

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G+ + + +V   L   V +AN LI M+G    V+DA  +F  M ++D ISWN++I+  
Sbjct: 162 VAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMY 221

Query: 181 ARNGNLELAFGFL----HRLPNPDTISY-------------------------------- 204
           +        F  L    H    PD  +                                 
Sbjct: 222 SHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSV 281

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE-MQS 260
              N ++N  +  G +++A  +  +M   +  SWN++++ YV  N   EAL   G+ +Q+
Sbjct: 282 PLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQT 341

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            + P +  TFS+ L   +   AL  G  IH+ ++++ L   +++ ++LL MYSKC  +E 
Sbjct: 342 DEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMED 401

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            + +F S+   ++V+ N +  GYA   D+   + +F  ++    ++P+ +T +N+   C
Sbjct: 402 TERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGT-GIKPNYITMINLQGTC 459



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 172/374 (45%), Gaps = 41/374 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+  +++ SG L++V V+ +L+  +  +  + DA ++F  + +   +SWN++IS Y    
Sbjct: 166 QVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEE 225

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
            Y K   +  ++   E+  D  +  S ++ C     + LG  IHS  V   L   V + N
Sbjct: 226 VYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLIN 285

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------- 196
            L++MY   G +++A  +F  M  +D+ISWN++I++  ++ +   A   L +L       
Sbjct: 286 ALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGP 345

Query: 197 PNPDTISY---------------------------------NEVINGIAQFGDIEDAIMI 223
           PN  T S                                  N ++   ++   +ED   +
Sbjct: 346 PNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERV 405

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
             SMP  +  S N +  GY     V  A+ +F  M+   +  +  T   +      L  L
Sbjct: 406 FESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDL 465

Query: 284 -TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
            ++GM +H+ V + GL +   + ++L+ MY+ CG +E +  +F  +  K++++WNA+I  
Sbjct: 466 HSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAIIAA 525

Query: 343 YARNGDLTKVIELF 356
             R+G   + I+LF
Sbjct: 526 NVRHGRGEEAIKLF 539



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 166/359 (46%), Gaps = 42/359 (11%)

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG---SL 120
           +P  +  SW + +SG  + G    A  L   +   ++    ++  S + AC   G     
Sbjct: 1   MPHRTSSSWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGA 60

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G AIH+   +  L   V I   L+ +YG  G V +A  +F EM  ++++SW +++ A 
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVAL 120

Query: 181 ARNGNLELAFGFLHRLPNPDT-------------------------ISYNEVING----- 210
           + NG +E A     R+                              ++ + V++G     
Sbjct: 121 SSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHV 180

Query: 211 ------IAQFGD---IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                 I  FG+   ++DA  +   M   +  SWN++++ Y +     +   +  +M+  
Sbjct: 181 SVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHG 240

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           +V  D  T  +++S  A    +  G  IHS  +  GL  S+ + +AL++MYS  G+++ A
Sbjct: 241 EVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEA 300

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +S+FR++ R+++++WN MI+ Y ++    + +E   QL    +  P+S+TF + L ACS
Sbjct: 301 ESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACS 359



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 115/232 (49%), Gaps = 5/232 (2%)

Query: 1   PNEYVLFHLLRASSDLG-WDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           PN   + +L      LG   +Y   LH Y+ ++G LS+ +++ +L+  Y     L  +  
Sbjct: 447 PNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTG 506

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  I   SV+SWN++I+  V+ G+  +A+ LF++ + +    D +     L++   L S
Sbjct: 507 IFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLAS 566

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+ GM +H   VK  L+    + N  +DMYGKCG ++  +    +   +    WN++I+ 
Sbjct: 567 LEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQCWNTLISG 626

Query: 180 SARNGNL-ELAFGFLHRLP---NPDTISYNEVINGIAQFGDIEDAIMILSSM 227
            AR G   E    F H +     PD +++  +++  +  G I+  +   +SM
Sbjct: 627 YARYGYFKEAEDTFKHMVSVGQKPDYVTFVALLSACSHAGLIDKGMDYYNSM 678


>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 164/558 (29%), Positives = 286/558 (51%), Gaps = 51/558 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+    +  A + L +  +  QLH  ++K+ F SN+FV+ AL+  Y K  +L +A K 
Sbjct: 408 PDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQ 467

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     VSWN++I GYVQ     +A  +F  +  + +  D  S  S ++AC  +   
Sbjct: 468 FEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEF 527

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G   H  +VK  L+      + LIDMY KCG V  A  VF  M  ++++S N++IA  
Sbjct: 528 KQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGY 587

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVING----------------IAQFGDIEDA 220
             + +LE A      +      P  +++  +++G                + ++G +  +
Sbjct: 588 TMS-HLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSS 646

Query: 221 IMI--------------------LSSMPSPNS-SSWNSILTGYVNRNRVPEALHLFGEMQ 259
            M+                     S +  P     W ++++GY  +N   +AL  +  M+
Sbjct: 647 EMVCVSLLCMYMNSQRFADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMR 706

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           S ++  D+ TF+++L   AG+S+L  G  +HS +   G +   +  S+L+DMY+KCG V+
Sbjct: 707 SDNILPDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVK 766

Query: 320 IADSMFRSLCRKN-LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            +  +F  + R+N +++WN+MI G A+NG   + +E+F+Q++  + + PD VTFL VL+A
Sbjct: 767 GSLQVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQ-QSIIPDEVTFLGVLSA 825

Query: 379 CSHTDIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           CSH      +VSE    F+ M  +Y ++P V+H   M+ ++G+ G +  A+  I +LG  
Sbjct: 826 CSHA----GRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCK 881

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
           +  ++W  LL A     D    + +A ++++L+  S   YV+L  LY    NW  A  +R
Sbjct: 882 ADPMLWSTLLGACRKHGDEVRGKRAANKLMELKPQSSSSYVLLSGLYAESENWSGADSLR 941

Query: 496 NFMRERGLRKEAGCSWIE 513
             M+ +G++K  G SWIE
Sbjct: 942 REMKLKGVKKLPGYSWIE 959



 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 192/360 (53%), Gaps = 5/360 (1%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H   LK G      +   ++  Y K  ++  A K F  + +  V +WNS++S Y+  G 
Sbjct: 63  IHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGL 122

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           +   +  FV +    +  + ++F   L+AC  L  +  G  +H  + K            
Sbjct: 123 FATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGG 182

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA---FGFLHRLPN-PD 200
           LIDMY KC ++ DA  VF   ++ D +SW ++IA   R+G    A   F  + R+ + PD
Sbjct: 183 LIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPD 242

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            I+   VIN     G + DA  + + +P+PN  +WN +++G+  R    EA+  F E++ 
Sbjct: 243 QIALVTVINAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKK 302

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             +     +  ++LS IA LS L +G ++H+  IK+GLD ++ V SAL++MY+KC +++ 
Sbjct: 303 TGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDA 362

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F SL  +N+V WNAM+ G+A+NG   +V+E F  +K     QPD  TF ++ +AC+
Sbjct: 363 AKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKR-HGPQPDEFTFTSIFSACA 421



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 226/478 (47%), Gaps = 45/478 (9%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           +L A + L    Y   +H   +K G   NV+V +AL+  Y K + +  A ++F  + + +
Sbjct: 315 VLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERN 374

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           +V WN+++ G+ Q+G  ++ +  F  ++R     D ++FTS  +AC  L  L  G  +H+
Sbjct: 375 IVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHT 434

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
            ++K      + +AN L+DMY K G++++A   F  M   D +SWN++I    +    + 
Sbjct: 435 VMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDE 494

Query: 189 AFGFLHRLPN----PDTISYNEVINGIAQFGDIED------------------------- 219
           AF    R+ +    PD +S   +++  A   + +                          
Sbjct: 495 AFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLID 554

Query: 220 ----------AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
                     A  +  SMP  N  S N+++ GY   + + EA+HLF E+Q   +   E T
Sbjct: 555 MYVKCGVVLAARDVFYSMPYRNVVSINALIAGYT-MSHLEEAIHLFQEIQMVGLKPTEVT 613

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           F+ +L G  G   L  G  IH  V+K G L +S +V  +LL MY    +   ++++F  L
Sbjct: 614 FAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYMNSQRFADSETLFSEL 673

Query: 329 -CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387
              K LV W A+I+GYA+     K ++ ++ +++  ++ PD  TF +VL AC+   +   
Sbjct: 674 QYPKGLVVWTALISGYAQQNHHEKALQFYQHMRS-DNILPDQATFASVLRACA--GMSSL 730

Query: 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
           +  +   S+    G       C S+I +  + G+V  + ++  E+   +  + W +++
Sbjct: 731 QTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSVISWNSMI 788



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 188/390 (48%), Gaps = 15/390 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+    +L A S L    Y +Q+HC + K GF    F    L+  Y K  +L DA  +
Sbjct: 140 PNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDARLV 199

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F        VSW +LI+GYV+ G   +A+ +F +++R     D  +  + + A   LG L
Sbjct: 200 FDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVALGRL 259

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII----SWNSV 176
                + ++I   +    VV  N +I  + K G  E+AI  F E+    +     S  SV
Sbjct: 260 ADARKLFTQIPNPN----VVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSV 315

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYN-----EVINGIAQFGDIEDAIMILSSMPSPN 231
           ++A A    L      +H     + +  N      ++N  A+   ++ A  + +S+   N
Sbjct: 316 LSAIASLSMLNYG-SMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERN 374

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              WN++L G+       E +  F  M+      DE+TF+++ S  A L  L +G  +H+
Sbjct: 375 IVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHT 434

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
            +IK    +++ VA+AL+DMY+K G ++ A   F  +   + V+WNA+I GY +     +
Sbjct: 435 VMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDE 494

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              +F ++ +   + PD V+  ++++AC++
Sbjct: 495 AFFMFRRMVS-NGVLPDEVSLASIVSACAN 523



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 2/112 (1%)

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
           A L AL+   +IHS  +K G+    ++ + ++D+Y KCG V+ A   F  L +K++  WN
Sbjct: 52  AVLQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWN 111

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIPFDK 388
           ++++ Y  +G    V++ F  +     ++P+  TF  VL+ACS   DI + K
Sbjct: 112 SVLSMYLDHGLFATVVQSFVCMWN-HGVRPNEFTFAMVLSACSGLQDINYGK 162


>gi|414872719|tpg|DAA51276.1| TPA: methyltransferase small domain protein [Zea mays]
          Length = 601

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 160/512 (31%), Positives = 266/512 (51%), Gaps = 38/512 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++     LLR+   L   +  +Q+H +++ SG  S V++  +L+  Y     +  A  M
Sbjct: 122 PDQQTFLALLRSVERL---SAGRQVHAHVVVSGLHSRVYLRNSLIKMYIDAGDVETAELM 178

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F        VS N ++SGYV  G   KAL  F ++    I  D Y+  + L  CG+L + 
Sbjct: 179 FRSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVVDQYTAVALLTCCGRLKNE 238

Query: 121 QLGMAIHSKIVKY--SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            +G ++H  IV+   + + G+++ N L+DMY KCG +  A  +FGE  +KD ISW     
Sbjct: 239 LIGRSVHGVIVRRMDAGDHGLILVNALLDMYAKCGRMNAAKTIFGETGEKDAISW----- 293

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
                                     N +++G    G ++ A    S  PS +  SWN++
Sbjct: 294 --------------------------NTMVSGFVNAGMLDLASRFFSEAPSRDLISWNAL 327

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           L GY       E + LF +M +  V +D+ T  T++S   G  +L     +H  V+K+  
Sbjct: 328 LAGYARYKSFNEVMKLFHDMVASCVNLDKVTAVTLISAATGKGSLNHAKSVHGWVVKEFD 387

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
                +ASAL+DMY KCG V+ A  +F     K++  W AMI+G A NG  T+ +ELF +
Sbjct: 388 HQDAFLASALVDMYCKCGNVKTAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFCK 447

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           ++T   + P+ VT L VL+ACSH+ +  D+  + F++M + Y I+P +EH   M+ L+ +
Sbjct: 448 MQT-EVVAPNGVTLLAVLSACSHSGL-LDEGCKIFDAMKQRYSIEPGIEHFGCMVDLLAR 505

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G +  A  + R +       +W ++L+AS A  +++VA I++ E+++L+   +  YV+L
Sbjct: 506 SGRLIDALALARRMPMRPSRSIWGSILNASLAGQNIEVAEIASKELLRLDPAEEGGYVLL 565

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEAGCS 510
            NL+ + G+W+ +  +R  M  +GLRK AG S
Sbjct: 566 SNLHAAGGHWNHSDKVRQIMERKGLRKLAGAS 597


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 152/474 (32%), Positives = 255/474 (53%), Gaps = 34/474 (7%)

Query: 43  ALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA 102
           A++  Y +   + +A ++F  +P  + +SW  +I+GY Q+G+  +AL+L   L R+ +  
Sbjct: 357 AMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLP 416

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
              S TS+  AC  +G+L+ G  +HS  VK   +    + N LI MYGKC ++E    VF
Sbjct: 417 SLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVF 476

Query: 163 GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIM 222
             M  K                               DT+S+N  I  + Q   +EDA  
Sbjct: 477 NRMRVK-------------------------------DTVSWNSFIAALVQNNMLEDARH 505

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           I  +M S +  SW +I++ Y    R  EA+  F  M  +    +    + +LS   GL +
Sbjct: 506 IFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGS 565

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
              G  IH+  IK G+D+ ++VA+AL+ MY KCG  + +  +F S+  +++ TWN  ITG
Sbjct: 566 AKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCAD-SHKVFDSMEERDIFTWNTFITG 624

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
            A++G   + I+++E +++V  L P+ VTF+ +L ACSH  +  D+  ++F+SM++DYG+
Sbjct: 625 CAQHGLGREAIKMYEHMESVGVL-PNEVTFVGLLNACSHAGL-VDEGWQFFKSMSRDYGL 682

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
            P +EH   M+ L+G+ G+V  A++ I ++      V+W ALL A     + ++ R +A 
Sbjct: 683 TPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAE 742

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           ++   E  +   YVML N+Y+S G W   + +R  M++RG+ KE GCSW+++ N
Sbjct: 743 KLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRN 796



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/446 (24%), Positives = 203/446 (45%), Gaps = 50/446 (11%)

Query: 53  SLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALA 112
            + DA  +F ++PQ ++V+W  +ISGYV+  ++ K  ++F  +       D  +F S L+
Sbjct: 172 QMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLS 231

Query: 113 ACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED-AIGVFGEMIDKDII 171
           A   L  L +   +   ++K   E  VVI   ++++Y +  S  D AI  F  M++++  
Sbjct: 232 AVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEY 291

Query: 172 SWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
           +W+++IAA +  G ++ A     R P     S   ++ G+A+ G I +A ++   +P P 
Sbjct: 292 TWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIPDPI 351

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG------------ 279
             SWN+++TGY+    V EA  LF  M  ++      +++ M++G A             
Sbjct: 352 VVSWNAMITGYMQNGMVDEAKELFDRMPFRNT----ISWAGMIAGYAQNGRSEEALDLLQ 407

Query: 280 -----------------------LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
                                  + AL  G  +HS  +K G   +  V +AL+ MY KC 
Sbjct: 408 ALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCR 467

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            +E    +F  +  K+ V+WN+ I    +N  L     +F+ +     L  D V++  ++
Sbjct: 468 NMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNM-----LSRDVVSWTTII 522

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR---ELG 433
           +A +  +   D+  E+F++M  ++  KP       ++ + G  G     Q++     + G
Sbjct: 523 SAYAQAE-RGDEAVEFFKTMLHEHE-KPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHG 580

Query: 434 FGSYGVVWRALLSASGACSDLDVARI 459
             S  +V  AL+S    C   D  ++
Sbjct: 581 MDSELIVANALMSMYFKCGCADSHKV 606



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 173/391 (44%), Gaps = 61/391 (15%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           ++  L +A ++F  +P   +++WNS+IS Y  SG           LE + I  DA S  +
Sbjct: 45  RLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGM----------LEDARILFDAISGGN 94

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
                                        V  A  L+  Y + G V DA  VF  M +++
Sbjct: 95  -----------------------------VRTATILLSGYARLGRVLDARRVFDGMPERN 125

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
            ++WN++++   +NG++ +A      +P+ D  S+N ++ G      + DA  +   MP 
Sbjct: 126 TVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQ 185

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            N  +W  +++GYV   +  +   +F  M  +    D+  F+++LS + GL  L    ++
Sbjct: 186 RNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVL 245

Query: 290 HSCVIKQGLDASIVVASALLDMYSK-CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
              V+K G ++ +V+ +++L++Y++    ++IA   F  +  +N  TW+ MI   +  G 
Sbjct: 246 RPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGR 305

Query: 349 LTKVIELF--EQLKTVRDLQPDSVTFLNVLAAC---SHTDIPFDKVSEYFESMTKDYGIK 403
           +   I ++  + +K++    P     L  LA C   +   I F+++ +            
Sbjct: 306 IDAAIAVYGRDPVKSI----PSQTALLTGLARCGRITEARILFEQIPD------------ 349

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           P V    +MI    Q G V  A+ +   + F
Sbjct: 350 PIVVSWNAMITGYMQNGMVDEAKELFDRMPF 380



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 113/251 (45%), Gaps = 36/251 (14%)

Query: 12  ASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVS 71
           A S +G     +Q+H   +K+G   N +V  AL+  Y K  ++    ++F  +     VS
Sbjct: 427 ACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVS 486

Query: 72  WNSLISGYVQSGKYRKALNLFVELERSEI---------YADAYS---------------- 106
           WNS I+  VQ+     A ++F  +   ++         YA A                  
Sbjct: 487 WNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHE 546

Query: 107 ------FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIG 160
                  T  L+ CG LGS +LG  IH+  +K+ ++  +++AN L+ MY KCG   D+  
Sbjct: 547 KPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCA-DSHK 605

Query: 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGD 216
           VF  M ++DI +WN+ I   A++G    A      + +    P+ +++  ++N  +  G 
Sbjct: 606 VFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGL 665

Query: 217 IEDAIMILSSM 227
           +++      SM
Sbjct: 666 VDEGWQFFKSM 676



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 149/333 (44%), Gaps = 58/333 (17%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV  +T L+  Y ++  + DA ++F  +P+ + V+WN+++S YVQ+G    A  LF    
Sbjct: 94  NVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLF---- 149

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
                 DA                                R V   N ++  Y     + 
Sbjct: 150 ------DAMP-----------------------------SRDVTSWNSMVTGYCHSRQMV 174

Query: 157 DAIGVFGEMIDKDIISWNSVIAASAR---NGNLELAFGFLHRL-PNPDTISYNEV---IN 209
           DA  +F +M  +++++W  +I+   R   +G     F  +H    +PD  ++  V   + 
Sbjct: 175 DAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVT 234

Query: 210 GIAQFGDIED-AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268
           G+   G +E    ++L +    +     SIL  Y    R   AL +  +     V  +EY
Sbjct: 235 GLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYT---RDASALDIAIKFFDGMVERNEY 291

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA--SIVVASALLDMYSKCGQVEIADSMFR 326
           T+STM      ++AL+ G  I + +   G D   SI   +ALL   ++CG++  A  +F 
Sbjct: 292 TWSTM------IAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFE 345

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            +    +V+WNAMITGY +NG + +  ELF+++
Sbjct: 346 QIPDPIVVSWNAMITGYMQNGMVDEAKELFDRM 378



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 3/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN  +L  LL     LG     QQ+H   +K G  S + V+ ALM  Y K    AD+HK+
Sbjct: 548 PNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGC-ADSHKV 606

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  + +WN+ I+G  Q G  R+A+ ++  +E   +  +  +F   L AC   G +
Sbjct: 607 FDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLV 666

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G      + + Y L   +    C++D+ G+ G V+ A     +M I+ D + W++++ 
Sbjct: 667 DEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLG 726

Query: 179 ASARNGNLELA 189
           A   + N E+ 
Sbjct: 727 ACKIHKNAEIG 737



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 129/304 (42%), Gaps = 49/304 (16%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           D  +++  I  +A+ G + +A  +  +MP  +  +WNS+++ Y N   + +A  LF    
Sbjct: 32  DKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILF---- 87

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
                            I+G                     ++  A+ LL  Y++ G+V 
Sbjct: 88  ---------------DAISG--------------------GNVRTATILLSGYARLGRVL 112

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F  +  +N V WNAM++ Y +NGD+T    LF+ + +      D  ++ +++   
Sbjct: 113 DARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPS-----RDVTSWNSMVTGY 167

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
            H+    D  +  F+ M +   +  TV      +R+  Q G+ W   RM+   G      
Sbjct: 168 CHSRQMVDAWN-LFKQMPQRNLVTWTV-MISGYVRI-EQHGKGWDIFRMMHHEGASPDQS 224

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY-VMLCNLYTSHGN-WDVASVMRNF 497
            + ++LSA     DL V  +    V+K   +SD V    + N+YT   +  D+A    + 
Sbjct: 225 NFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDG 284

Query: 498 MRER 501
           M ER
Sbjct: 285 MVER 288



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 94/215 (43%), Gaps = 39/215 (18%)

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           AR G L  A      +P+ D I++N +I+     G +EDA ++  ++   N  +   +L+
Sbjct: 44  ARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLS 103

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GY    RV +A  +F  M  ++                    + W  ++ SC ++ G   
Sbjct: 104 GYARLGRVLDARRVFDGMPERNT-------------------VAWNAMV-SCYVQNG--- 140

Query: 301 SIVVASALLD-MYSK------------CGQVEIADS--MFRSLCRKNLVTWNAMITGYAR 345
            I +A  L D M S+            C   ++ D+  +F+ + ++NLVTW  MI+GY R
Sbjct: 141 DITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVR 200

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
                K  ++F  +       PD   F +VL+A +
Sbjct: 201 IEQHGKGWDIFRMMHH-EGASPDQSNFASVLSAVT 234


>gi|414867972|tpg|DAA46529.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 993

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 165/536 (30%), Positives = 269/536 (50%), Gaps = 49/536 (9%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H   + SG   +V +  AL+  Y     L +A  +F  + +  V+SWN++IS YVQS  
Sbjct: 268 IHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNS 327

Query: 85  YRKALNLFVEL-ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
             +AL    +L +  E   ++ +F+SAL AC    +L  G  IH+ I++ SL+  ++I N
Sbjct: 328 CVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGN 387

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA-------------- 189
            L+ MY KC S+ED   VF  M   D++S N +    A   ++  A              
Sbjct: 388 SLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKP 447

Query: 190 --------------FGFLHRLPNP------------DTISYNEVINGIAQFGDIEDAIMI 223
                          G LH    P            D    N +I   A  GD+E +  I
Sbjct: 448 NYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGI 507

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
            S + + +  SWN+I+   V   R  EA+ LF + Q     +D +  +  LS  A L++L
Sbjct: 508 FSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASL 567

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL---CRKNLVTWNAMI 340
             GM +H   +K GLD    V +A +DMY KCG++   D M ++L     +    WN +I
Sbjct: 568 EEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKM---DCMLKTLPDPAHRPTQCWNTLI 624

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           +GYAR G   +  + F+ + +V   +PD VTF+ +L+ACSH  +  DK  +Y+ SM   +
Sbjct: 625 SGYARYGYFKEAEDTFKHMVSVGQ-KPDYVTFVALLSACSHAGL-IDKGMDYYNSMAPTF 682

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
           G+ P ++HC  ++ L+G+ G+   A++ I E+      ++WR+LLS+S    +LD+ R +
Sbjct: 683 GVSPGIKHCVCIVDLLGRLGKFAEAEKFIDEMPVLPNDLIWRSLLSSSRTHKNLDIGRKA 742

Query: 461 AAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           A  +++L+   D  YV+L NLY ++  W     +R+ M+   L K   CSW++++N
Sbjct: 743 AKNLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMKTIKLNKRPACSWLKLKN 798



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 197/419 (47%), Gaps = 44/419 (10%)

Query: 4   YVLFHLLRASSDLGWD--TYC-QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           + L  L+ A    GW     C   +H    ++G + NV++ TAL+  Y     + +A ++
Sbjct: 42  FALASLVTACEHRGWQEGAACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRL 101

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+PQ +VVSW +++     +G   +AL  +  + +  +  +A +  + ++ CG L   
Sbjct: 102 FWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDE 161

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G+ + + +V   L   V +AN LI M+G    V+DA  +F  M ++D ISWN++I+  
Sbjct: 162 VAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMY 221

Query: 181 ARNGNLELAFGFL----HRLPNPDTISY-------------------------------- 204
           +        F  L    H    PD  +                                 
Sbjct: 222 SHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSV 281

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE-MQS 260
              N ++N  +  G +++A  +  +M   +  SWN++++ YV  N   EAL   G+ +Q+
Sbjct: 282 PLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQT 341

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            + P +  TFS+ L   +   AL  G  IH+ ++++ L   +++ ++LL MYSKC  +E 
Sbjct: 342 DEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMED 401

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            + +F S+   ++V+ N +  GYA   D+   + +F  ++    ++P+ +T +N+   C
Sbjct: 402 TERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGT-GIKPNYITMINLQGTC 459



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 172/374 (45%), Gaps = 41/374 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+  +++ SG L++V V+ +L+  +  +  + DA ++F  + +   +SWN++IS Y    
Sbjct: 166 QVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEE 225

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
            Y K   +  ++   E+  D  +  S ++ C     + LG  IHS  V   L   V + N
Sbjct: 226 VYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLIN 285

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------- 196
            L++MY   G +++A  +F  M  +D+ISWN++I++  ++ +   A   L +L       
Sbjct: 286 ALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGP 345

Query: 197 PNPDTISY---------------------------------NEVINGIAQFGDIEDAIMI 223
           PN  T S                                  N ++   ++   +ED   +
Sbjct: 346 PNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERV 405

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
             SMP  +  S N +  GY     V  A+ +F  M+   +  +  T   +      L  L
Sbjct: 406 FESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDL 465

Query: 284 -TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
            ++GM +H+ V + GL +   + ++L+ MY+ CG +E +  +F  +  K++++WNA+I  
Sbjct: 466 HSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAIIAA 525

Query: 343 YARNGDLTKVIELF 356
             R+G   + I+LF
Sbjct: 526 NVRHGRGEEAIKLF 539



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 166/359 (46%), Gaps = 42/359 (11%)

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG---SL 120
           +P  +  SW + +SG  + G    A  L   +   ++    ++  S + AC   G     
Sbjct: 1   MPHRTSSSWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGA 60

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G AIH+   +  L   V I   L+ +YG  G V +A  +F EM  ++++SW +++ A 
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVAL 120

Query: 181 ARNGNLELAFGFLHRLPNPDT-------------------------ISYNEVING----- 210
           + NG +E A     R+                              ++ + V++G     
Sbjct: 121 SSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHV 180

Query: 211 ------IAQFGD---IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                 I  FG+   ++DA  +   M   +  SWN++++ Y +     +   +  +M+  
Sbjct: 181 SVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHG 240

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           +V  D  T  +++S  A    +  G  IHS  +  GL  S+ + +AL++MYS  G+++ A
Sbjct: 241 EVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEA 300

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +S+FR++ R+++++WN MI+ Y ++    + +E   QL    +  P+S+TF + L ACS
Sbjct: 301 ESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACS 359



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 115/232 (49%), Gaps = 5/232 (2%)

Query: 1   PNEYVLFHLLRASSDLG-WDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           PN   + +L      LG   +Y   LH Y+ ++G LS+ +++ +L+  Y     L  +  
Sbjct: 447 PNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTG 506

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  I   SV+SWN++I+  V+ G+  +A+ LF++ + +    D +     L++   L S
Sbjct: 507 IFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLAS 566

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+ GM +H   VK  L+    + N  +DMYGKCG ++  +    +   +    WN++I+ 
Sbjct: 567 LEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQCWNTLISG 626

Query: 180 SARNGNL-ELAFGFLHRLP---NPDTISYNEVINGIAQFGDIEDAIMILSSM 227
            AR G   E    F H +     PD +++  +++  +  G I+  +   +SM
Sbjct: 627 YARYGYFKEAEDTFKHMVSVGQKPDYVTFVALLSACSHAGLIDKGMDYYNSM 678


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 154/554 (27%), Positives = 282/554 (50%), Gaps = 44/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++     L A +DLG     +Q+H   +++GF  + ++ + L+  Y +  SL  A ++
Sbjct: 39  PNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEV 98

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +  P VV + SLIS + ++G++  A    +++ +  +  + ++ T+ L AC ++   
Sbjct: 99  FDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV--- 155

Query: 121 QLGMAIHSKIVKYSLERG--VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            LG  IH  ++K    R   V  +  LID Y + G  + A  VF  +  K+++SW S++ 
Sbjct: 156 -LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQ 214

Query: 179 ASARNGNLELAFGFLHRL------PNPDTISY---------------------------- 204
              R+G LE A      +      PN   +S                             
Sbjct: 215 LYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIR 274

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +++   + G +E+   +L+ + +P+  SW + ++         +A+ L  +M S+ 
Sbjct: 275 VSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEG 334

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
              + Y FS++LS  A +++L  GM  H   +K G D+ I   +AL++MYSKCGQ+  A 
Sbjct: 335 FTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSAR 394

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
             F  +   ++ +WN++I G+A++GD  K +E+F ++++   ++PD  TFL VL  C+H+
Sbjct: 395 LAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRS-NGIKPDDSTFLGVLMGCNHS 453

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  ++   +F  M   Y   P   H   MI ++G+ G    A RMI ++ F    ++W+
Sbjct: 454 GM-VEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWK 512

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
            LL++     +LD+ +++A  +++L       YV++ N+Y  HG W+ A  +R  M E G
Sbjct: 513 TLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETG 572

Query: 503 LRKEAGCSWIEVEN 516
           ++K+AGCSWIE+ N
Sbjct: 573 VKKDAGCSWIEINN 586



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 177/354 (50%), Gaps = 41/354 (11%)

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
           +P+ +VV+W S++SGY ++G+   AL +F ++  S +  + ++  +AL AC  LG+L+ G
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
             +HS  V+        I +CLI+MY +CGS+  A  VF  M   D++ + S+I+A  RN
Sbjct: 61  EQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRN 120

Query: 184 GNLELAFGFLHRL------PNPDTI-------------------------------SYNE 206
           G  ELA   L ++      PN  T+                               S   
Sbjct: 121 GEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTA 180

Query: 207 VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
           +I+  ++ G+ + A  +  S+   N  SW S++  Y+   R+ EAL +FG+M S+ V  +
Sbjct: 181 LIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPN 240

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
           E+  S +L G  G  ++  G  +H   IK  L   I V++ALL MY + G VE  ++M  
Sbjct: 241 EFALSIVL-GACG--SIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLN 297

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            +   +LV+W   I+   +NG   K I L  Q+ +     P+   F +VL++C+
Sbjct: 298 KIENPDLVSWTTAISANFQNGFGEKAIALLCQMHS-EGFTPNGYAFSSVLSSCA 350


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 154/503 (30%), Positives = 268/503 (53%), Gaps = 9/503 (1%)

Query: 21   YCQQLHCYI-LKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79
            Y ++LH  I +     SN  +   LM  Y           +F EIP+ +VV +N +I  Y
Sbjct: 1042 YLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSY 1101

Query: 80   VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
            V +  Y  AL +F  +    I  D Y++   L A      L +GM IH+ +V+  L+  V
Sbjct: 1102 VNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNV 1161

Query: 140  VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP-- 197
             + N LI MYGKCG + +A  V  ZM  +D++SWNS++A  ARNG  + A      +   
Sbjct: 1162 FVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELL 1221

Query: 198  --NPDTISYNEVINGIAQ--FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
               PD  +   ++  +      ++     +   + + +  SWN ++  Y+N +   EA+ 
Sbjct: 1222 GLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVD 1281

Query: 254  LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
            +F +M+   V  D  + +++L     LSAL  G  IH  V+++ L  ++++ +AL+DMY+
Sbjct: 1282 IFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYA 1341

Query: 314  KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
            KCG +E A  +F  +  +++V+W +MI+ Y  NG     + LF +++ +  L PDS+ F+
Sbjct: 1342 KCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDL-GLNPDSIAFV 1400

Query: 374  NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
            +VL+ACSH  +  D+   YF+ MT++  I P +EH   M+ L+G+ G+V  A   I+++ 
Sbjct: 1401 SVLSACSHAGL-LDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMP 1459

Query: 434  FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
                  VW ALLSA    S++ +  ++A ++ +L  +    YV+L N+Y   G W+  + 
Sbjct: 1460 MEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTT 1519

Query: 494  MRNFMRERGLRKEAGCSWIEVEN 516
            +R+ M+ +G++K  G S  E++N
Sbjct: 1520 VRSIMKTKGIKKMPGVSNFELDN 1542



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 132/278 (47%), Gaps = 26/278 (9%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
            P+   +  +L A  DL      +++H Y+++     N+ +  AL+  Y K   L  A ++
Sbjct: 1293 PDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREV 1352

Query: 61   FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            F ++    VVSW S+IS Y  +GK R A++LF  ++   +  D+ +F S L+AC   G L
Sbjct: 1353 FDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLL 1412

Query: 121  QLG------MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISW 173
              G      M    KIV   +E  V    C++D+ G+ G V++A G   +M ++ +   W
Sbjct: 1413 DEGRYYFKLMTEECKIVP-RIEHFV----CMVDLLGRAGQVDEAYGFIKQMPMEPNERVW 1467

Query: 174  NSVIAASARNGNL---ELAFGFLHRLPNPDTISYNEVINGI-AQFGDIEDAIMILSSMPS 229
             ++++A     N+    LA   L +L  P+   Y  +++ I A+ G  ED   + S M +
Sbjct: 1468 GALLSACRVYSNMIIGLLAADQLFQL-CPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKT 1526

Query: 230  ------PNSSSW---NSILTGYVNRNRVPEALHLFGEM 258
                  P  S++   N + T        P++  ++ E+
Sbjct: 1527 KGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEEL 1564


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 154/554 (27%), Positives = 282/554 (50%), Gaps = 44/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++     L A +DLG     +Q+H   +++GF  + ++ + L+  Y +  SL  A ++
Sbjct: 112 PNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEV 171

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +  P VV + SLIS + ++G++  A    +++ +  +  + ++ T+ L AC ++   
Sbjct: 172 FDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV--- 228

Query: 121 QLGMAIHSKIVKYSLERG--VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            LG  IH  ++K    R   V  +  LID Y + G  + A  VF  +  K+++SW S++ 
Sbjct: 229 -LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQ 287

Query: 179 ASARNGNLELAFGFLHRL------PNPDTISY---------------------------- 204
              R+G LE A      +      PN   +S                             
Sbjct: 288 LYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIR 347

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +++   + G +E+   +L+ + +P+  SW + ++         +A+ L  +M S+ 
Sbjct: 348 VSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEG 407

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
              + Y FS++LS  A +++L  GM  H   +K G D+ I   +AL++MYSKCGQ+  A 
Sbjct: 408 FTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSAR 467

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
             F  +   ++ +WN++I G+A++GD  K +E+F ++++   ++PD  TFL VL  C+H+
Sbjct: 468 LAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRS-NGIKPDDSTFLGVLMGCNHS 526

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  ++   +F  M   Y   P   H   MI ++G+ G    A RMI ++ F    ++W+
Sbjct: 527 GM-VEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWK 585

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
            LL++     +LD+ +++A  +++L       YV++ N+Y  HG W+ A  +R  M E G
Sbjct: 586 TLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETG 645

Query: 503 LRKEAGCSWIEVEN 516
           ++K+AGCSWIE+ N
Sbjct: 646 VKKDAGCSWIEINN 659



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 184/368 (50%), Gaps = 41/368 (11%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           K   LADA  +F  +P+ +VV+W S++SGY ++G+   AL +F ++  S +  + ++  +
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
           AL AC  LG+L+ G  +HS  V+        I +CLI+MY +CGS+  A  VF  M   D
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 170 IISWNSVIAASARNGNLELAFGFLHRL------PNPDTI--------------------- 202
           ++ + S+I+A  RNG  ELA   L ++      PN  T+                     
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIK 239

Query: 203 ----------SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEAL 252
                     S   +I+  ++ G+ + A  +  S+   N  SW S++  Y+   R+ EAL
Sbjct: 240 KIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEAL 299

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
            +FG+M S+ V  +E+  S +L G  G  ++  G  +H   IK  L   I V++ALL MY
Sbjct: 300 QVFGDMISEGVDPNEFALSIVL-GACG--SIGLGRQLHCSAIKHDLITDIRVSNALLSMY 356

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
            + G VE  ++M   +   +LV+W   I+   +NG   K I L  Q+ +     P+   F
Sbjct: 357 GRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHS-EGFTPNGYAF 415

Query: 373 LNVLAACS 380
            +VL++C+
Sbjct: 416 SSVLSSCA 423



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 101/203 (49%), Gaps = 13/203 (6%)

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
           AA+A NG  E          +PD +   + +N + + G + DA+ +   MP  N  +W S
Sbjct: 35  AAAADNGCAE----------SPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTS 84

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           +++GY    R   AL +F +M    V  +++  +  L   A L AL  G  +HS  ++ G
Sbjct: 85  VMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAG 144

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE-LF 356
                 + S L++MYS+CG +  A  +F  +   ++V + ++I+ + RNG+     E L 
Sbjct: 145 FAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALI 204

Query: 357 EQLKTVRDLQPDSVTFLNVLAAC 379
           + LK  + L+P+  T   +L AC
Sbjct: 205 QMLK--QGLKPNEHTMTTILTAC 225


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 160/561 (28%), Positives = 288/561 (51%), Gaps = 52/561 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    ++++   L      + +H  I+  GF +++FVST+L+  Y K+ S+ D++ +
Sbjct: 219 PDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWV 278

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + + + VSWN++ISG   +G + +A +LFV ++      + Y+  S   A G+L  +
Sbjct: 279 FNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDV 338

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS------WN 174
            +G  + +   +  +E  V++   LIDMY KCGS+ DA  VF    D + I+      WN
Sbjct: 339 NMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVF----DTNFINCGVNTPWN 394

Query: 175 SVIAASARNG----NLELAFGFLHRLPNPDTISYNEVINGIA-----QFGDI-------- 217
           ++I+  +++G     LEL           D  +Y  V N IA     QFG +        
Sbjct: 395 AMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKC 454

Query: 218 -----------------------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
                                  ED   +   M   +  SW +++T Y   +   EAL  
Sbjct: 455 GLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALAT 514

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F  M+ +    +++TFS++L   A L  L +G  +H  + K GLD    + SAL+DMY+K
Sbjct: 515 FCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAK 574

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG +  A  +F  +   ++V+W A+I+GYA++G +   ++LF +++ +  ++ ++VT L 
Sbjct: 575 CGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRME-LSGIKANAVTLLC 633

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           VL ACSH  +  + +  YF+ M   YG+ P +EH   +I L+G+ G +  A   IR++  
Sbjct: 634 VLFACSHGGMVEEGLF-YFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPM 692

Query: 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494
               +VW+ LL       ++++  I+A +++ +  +    YV+L N Y   G+++    +
Sbjct: 693 EPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSL 752

Query: 495 RNFMRERGLRKEAGCSWIEVE 515
           RN M+++G++KE G SWI V+
Sbjct: 753 RNVMKDQGVKKEPGYSWISVK 773



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 201/421 (47%), Gaps = 49/421 (11%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCYILKSGF----LSNVFVSTALMGFYRKINSLADAHKMF 61
           L  +LR  ++ G     + +H  +LKS F    L  +F   A +  Y K +    A  +F
Sbjct: 121 LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHV--YSKCSEFRAACGVF 178

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            E+PQ +V SW  +I G  + G +      F E+  S I  D +++++ + +C  L SL+
Sbjct: 179 DEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLE 238

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           LG  +H++IV       + ++  L++MY K GS+ED+  VF  M + + +SWN++I+   
Sbjct: 239 LGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCT 298

Query: 182 RNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGD---------------IEDAIM 222
            NG    AF    R+ N    P+  +   V   + +  D               IE  ++
Sbjct: 299 SNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVL 358

Query: 223 ILSSMPSPNS----------------------SSWNSILTGYVNRNRVPEALHLFGEMQS 260
           + +++    S                      + WN++++GY       EAL L+ +M  
Sbjct: 359 VGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQ 418

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV-VASALLDMYSKCGQVE 319
             +  D YT+ ++ + IA   +L +G ++H  V+K GLD  +V V +A+ D YSKCG +E
Sbjct: 419 NGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLE 478

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
               +F  +  +++V+W  ++T Y+++    + +  F  ++      P+  TF +VL +C
Sbjct: 479 DVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMRE-EGFAPNQFTFSSVLISC 537

Query: 380 S 380
           +
Sbjct: 538 A 538



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 118/249 (47%), Gaps = 8/249 (3%)

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           + +N   +  ++  +   A  +   MP  N  SW  ++ G        +    F EM + 
Sbjct: 156 VLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNS 215

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D++ +S ++    GL +L  G ++H+ ++ +G    I V+++LL+MY+K G +E +
Sbjct: 216 GILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDS 275

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +   N V+WNAMI+G   NG   +  +LF ++K      P+  T ++V  A   
Sbjct: 276 YWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKN-GACTPNMYTLVSVSKAVGK 334

Query: 382 -TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV- 439
             D+   K     ++   + GI+  V    ++I +  + G +  A R + +  F + GV 
Sbjct: 335 LVDVNMGK---EVQNCASELGIEGNVLVGTALIDMYSKCGSLHDA-RSVFDTNFINCGVN 390

Query: 440 -VWRALLSA 447
             W A++S 
Sbjct: 391 TPWNAMISG 399


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 155/522 (29%), Positives = 272/522 (52%), Gaps = 40/522 (7%)

Query: 1   PNEYVLFHLL----RASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLAD 56
           P+ Y    LL    RA+   G     + +H ++++ G   N  V+++L+  Y      A 
Sbjct: 17  PDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVAAYTAGGDGAA 76

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A  +  E   P  V+WN+LISG+ + G++ ++   FV++ R+       ++ S L+ACG+
Sbjct: 77  ARALVGECDTP--VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGK 134

Query: 117 -LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175
               + LGM +H ++V   +   + + N L+DMY +C  +  A  VF  M  + ++SW S
Sbjct: 135 GTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTS 194

Query: 176 VIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSW 235
           +++                               G+A+ G +++A  +   MP  ++ SW
Sbjct: 195 LLS-------------------------------GLARLGQVDEARDLFDRMPERDTVSW 223

Query: 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
            +++ GYV   R  EAL +F EMQ  +V  DE+T  ++++  A L AL  G  +   + +
Sbjct: 224 TAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSR 283

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
           QG+     V +AL+DMYSKCG +E A  +F+ +  ++  TW A+I G A NG   + IE+
Sbjct: 284 QGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEM 343

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415
           F ++  V +  PD VTF+ VL AC+H  +  DK  E+F SM + Y I P V H   +I L
Sbjct: 344 FHRMIRVSE-TPDEVTFIGVLTACTHAGL-VDKGREFFLSMIEAYNIAPNVVHYGCIIDL 401

Query: 416 MGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475
           +G+ G++  A   I ++       +W  LL+A     + ++  + A  +++L+ ++  VY
Sbjct: 402 LGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVY 461

Query: 476 VMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           ++L N+Y     W+    +R+ + E+G++KE GCS IE++ +
Sbjct: 462 ILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGI 503



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 7/134 (5%)

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIA----GLSALTWGMLIHSCVIKQGLDASIVVA 305
           +A+  +  M ++    D YTF  +L  +A    G  +      +H+ V++ G+  +  VA
Sbjct: 2   DAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVA 61

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           S+L+  Y+  G    A ++         V WNA+I+G+ R G   +    F  +      
Sbjct: 62  SSLVAAYTAGGDGAAARALVGEC--DTPVAWNALISGHNRGGRFGESCGSFVDMARA-GA 118

Query: 366 QPDSVTFLNVLAAC 379
            P  VT+++VL+AC
Sbjct: 119 APTPVTYVSVLSAC 132


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 161/557 (28%), Positives = 282/557 (50%), Gaps = 42/557 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+Y    +L+A S L       ++H +    G  S+VFV TAL+ FY K   L +A ++
Sbjct: 107 PNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRL 166

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VV+WN++I+G    G    A+ L ++++   I  ++ +    L   G+  +L
Sbjct: 167 FSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKAL 226

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G A+H   V+ S + GVV+   L+DMY KC  +  A  +F  M  ++ +SW+++I   
Sbjct: 227 GHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGY 286

Query: 181 ARNGNLELAFGFLHRL-------PNP---------------------------------D 200
             +  ++ A     ++       P P                                 D
Sbjct: 287 VXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLD 346

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +  N +++  A+ G I+DAI     M   +S S+++I++G V       AL +F  MQ 
Sbjct: 347 ILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQL 406

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             +  D  T   +L   + L+AL  G   H  +I +G     ++ +AL+DMYSKCG++  
Sbjct: 407 SGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISF 466

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  + R ++V+WNAMI GY  +G   + + LF  L  +  L+PD +TF+ +L++CS
Sbjct: 467 AREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLAL-GLKPDDITFICLLSSCS 525

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H+ +  +    +F++M++D+ I P +EHC  M+ ++G+ G +  A   IR + F     +
Sbjct: 526 HSGLVMEG-RLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRI 584

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W ALLSA     ++++    + ++  L  +S   +V+L N+Y++ G WD A+ +R   ++
Sbjct: 585 WSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKD 644

Query: 501 RGLRKEAGCSWIEVENV 517
            GL+K  GCSWIE+  +
Sbjct: 645 WGLKKIPGCSWIEINGI 661



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 204/421 (48%), Gaps = 45/421 (10%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N Y+  HLL A       T  +++H + LK+   ++  V   L   Y   N +  A ++F
Sbjct: 9   NNYL--HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            EIP PSV+ WN +I  Y  +G +  A++L+  +    +  + Y++   L AC  L +++
Sbjct: 67  DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G+ IHS    + LE  V +   L+D Y KCG + +A  +F  M  +D+++WN++IA  +
Sbjct: 127 DGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 182 RNGNLELAFGFLHRL------PNPDTI-------------SYNEVINGIAQFGDIEDAIM 222
             G  + A   + ++      PN  TI              + + ++G       ++ ++
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVV 246

Query: 223 --------------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                               I   M   N  SW++++ GYV  + + EAL LF +M  KD
Sbjct: 247 VGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKD 306

Query: 263 VPMD--EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             MD    T  ++L   A L+ L+ G  +H  +IK G    I++ + LL MY+KCG ++ 
Sbjct: 307 A-MDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDD 365

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A   F  +  K+ V+++A+++G  +NG+    + +F  ++ +  + PD  T L VL ACS
Sbjct: 366 AIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQ-LSGIDPDLTTMLGVLPACS 424

Query: 381 H 381
           H
Sbjct: 425 H 425


>gi|147801011|emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]
          Length = 711

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 150/530 (28%), Positives = 277/530 (52%), Gaps = 42/530 (7%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H +++ +GF S++ ++T L+ FY K+  +  A  +F  +P+ SVVSW +++SGY Q+G+
Sbjct: 173 IHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGR 232

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           + KA  LF ++    + A+ +++ SAL AC  L  L +G+ +   I K      + + + 
Sbjct: 233 FEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSA 292

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PD 200
           L+D + KCG +EDA  +FG M+++D++SWN++I   A  G  + +F     +      PD
Sbjct: 293 LVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPD 352

Query: 201 TISYNEV-----------------------------------INGIAQFGDIEDAIMILS 225
             +   V                                   IN  A+ G +  A  +  
Sbjct: 353 CYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRK 412

Query: 226 SMPSPNSSSWNSILTGYVNRNRVP-EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
            M   +  S  +++TGY +      +AL LF EM   ++ MD+    +ML+  A L++  
Sbjct: 413 GMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFA 472

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  IH+  +K      + + +AL+DMY+K G++E A   F  +  KN+++W ++I+GYA
Sbjct: 473 LGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYA 532

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           ++G     + L++++++ +  +P+ VTFL++L ACSHT +  +   E F +M   Y IKP
Sbjct: 533 KHGYGHMAVSLYKKMES-KGFKPNDVTFLSLLFACSHTGLTAEGC-ECFNNMVNKYNIKP 590

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
             EH   M+ L  ++G +  A  ++ ++       +W A+L AS     + + + +A+ +
Sbjct: 591 RAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNL 650

Query: 465 IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
             ++ ++   YV+L ++Y++ G WD A  +R  M ER  +K AG S+ + 
Sbjct: 651 FNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQA 700



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 132/271 (48%), Gaps = 10/271 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y L  +LRAS++ G      Q+H  I + G+ S   V+  L+  Y K  SL  A  +
Sbjct: 351 PDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDL 410

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYR-KALNLFVELERSEIYADAYSFTSALAACGQLGS 119
              + +  + S  +LI+GY   G Y   AL+LF E+ +  I  D     S L  C  L S
Sbjct: 411 RKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLAS 470

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
             LG  IH+  +KY     V + N LIDMY K G +EDA   F EM +K++ISW S+I+ 
Sbjct: 471 FALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISG 530

Query: 180 SARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPS-----P 230
            A++G   +A     ++ +    P+ +++  ++   +  G   +     ++M +     P
Sbjct: 531 YAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKP 590

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
            +  ++ ++  +  +  + EA +L  ++  K
Sbjct: 591 RAEHYSCMVDLFARQGLLEEAYNLLCKIDIK 621



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 175/428 (40%), Gaps = 61/428 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
            N++     LRA + L       Q+   I K  F+ N+FV +AL+ F+ K   + DA  +
Sbjct: 250 ANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYL 309

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  VVSWN++I GY   G    +  +F  + R  +  D Y+  S L A  + G L
Sbjct: 310 FGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGL 369

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +   IH  I +       ++   LI+ Y K GS+  A  +   M+ KD+ S  ++I   
Sbjct: 370 IIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGY 429

Query: 181 ARNG---------------------------------NL-ELAFGF------LHRLPNPD 200
           A  G                                 NL   A G       L   P+ D
Sbjct: 430 AHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYD 489

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +I+  A+ G+IEDA      M   N  SW S+++GY        A+ L+ +M+S
Sbjct: 490 VAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMES 549

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           K    ++ TF ++L   +       G    ++ V K  +       S ++D++++ G +E
Sbjct: 550 KGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLE 609

Query: 320 IADSMFRSLC----RKNLVTWNAM-----ITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370
            A   +  LC    + N   W A+     I GY   G         E    + ++QP++ 
Sbjct: 610 EA---YNLLCKIDIKHNASLWGAILGASSIYGYMSLGK--------EAASNLFNMQPENS 658

Query: 371 TFLNVLAA 378
               VLA+
Sbjct: 659 VNYVVLAS 666



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 153/365 (41%), Gaps = 44/365 (12%)

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR 182
           G  IH+ ++       + +   LI  Y K G V  A  VF  M ++ ++SW ++++  ++
Sbjct: 170 GHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQ 229

Query: 183 NGNLELAFGFL----HRLPNPDTISYNEVIN----------GI----------------- 211
           NG  E AF       H     +  +Y   +           GI                 
Sbjct: 230 NGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFV 289

Query: 212 --------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
                   ++ G +EDA  +  +M   +  SWN+++ GY  +    ++  +F  M    +
Sbjct: 290 KSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGL 349

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             D YT  ++L   A    L     IH  + + G  +  +V   L++ Y+K G +  A  
Sbjct: 350 VPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKD 409

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLT-KVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           + + + +K+L +  A+ITGYA  G  +   ++LF+++  + ++  D V   ++L  C+  
Sbjct: 410 LRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQM-NIGMDDVILCSMLNICA-- 466

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
           ++    +     +    Y     V    ++I +  + GE+  A+R   E+   +  + W 
Sbjct: 467 NLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNV-ISWT 525

Query: 443 ALLSA 447
           +L+S 
Sbjct: 526 SLISG 530



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           A   G LIH+ +I  G  + + + + L+  Y K G V  A ++F  +  +++V+W AM++
Sbjct: 166 AKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVS 225

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           GY++NG   K   LF  ++    ++ +  T+ + L AC+
Sbjct: 226 GYSQNGRFEKAFVLFSDMRHC-GVKANQFTYGSALRACT 263


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 161/557 (28%), Positives = 282/557 (50%), Gaps = 42/557 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+Y    +L+A S L       ++H +    G  S+VFV TAL+ FY K   L +A ++
Sbjct: 107 PNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRL 166

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VV+WN++I+G    G    A+ L ++++   I  ++ +    L   G+  +L
Sbjct: 167 FSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKAL 226

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G A+H   V+ S + GVV+   L+DMY KC  +  A  +F  M  ++ +SW+++I   
Sbjct: 227 GHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGY 286

Query: 181 ARNGNLELAFGFLHRL-------PNP---------------------------------D 200
             +  ++ A     ++       P P                                 D
Sbjct: 287 VASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLD 346

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +  N +++  A+ G I+DAI     M   +S S+++I++G V       AL +F  MQ 
Sbjct: 347 ILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQL 406

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             +  D  T   +L   + L+AL  G   H  +I +G     ++ +AL+DMYSKCG++  
Sbjct: 407 SGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISF 466

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  + R ++V+WNAMI GY  +G   + + LF  L  +  L+PD +TF+ +L++CS
Sbjct: 467 AREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLAL-GLKPDDITFICLLSSCS 525

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H+ +  +    +F++M++D+ I P +EHC  M+ ++G+ G +  A   IR + F     +
Sbjct: 526 HSGLVMEG-RLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRI 584

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W ALLSA     ++++    + ++  L  +S   +V+L N+Y++ G WD A+ +R   ++
Sbjct: 585 WSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKD 644

Query: 501 RGLRKEAGCSWIEVENV 517
            GL+K  GCSWIE+  +
Sbjct: 645 WGLKKIPGCSWIEINGI 661



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 204/421 (48%), Gaps = 45/421 (10%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N Y+  HLL A       T  +++H + LK+   ++  V   L   Y   N +  A ++F
Sbjct: 9   NNYL--HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            EIP PSV+ WN +I  Y  +G +  A++L+  +    +  + Y++   L AC  L +++
Sbjct: 67  DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G+ IHS    + LE  V +   L+D Y KCG + +A  +F  M  +D+++WN++IA  +
Sbjct: 127 DGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 182 RNGNLELAFGFLHRL------PNPDTI-------------SYNEVINGIAQFGDIEDAIM 222
             G  + A   + ++      PN  TI              + + ++G       ++ ++
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVV 246

Query: 223 --------------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                               I   M   N  SW++++ GYV  + + EAL LF +M  KD
Sbjct: 247 VGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKD 306

Query: 263 VPMD--EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             MD    T  ++L   A L+ L+ G  +H  +IK G    I++ + LL MY+KCG ++ 
Sbjct: 307 A-MDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDD 365

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A   F  +  K+ V+++A+++G  +NG+    + +F  ++ +  + PD  T L VL ACS
Sbjct: 366 AIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQ-LSGIDPDLTTMLGVLPACS 424

Query: 381 H 381
           H
Sbjct: 425 H 425


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 160/561 (28%), Positives = 288/561 (51%), Gaps = 52/561 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    ++++   L      + +H  I+  GF +++FVST+L+  Y K+ S+ D++ +
Sbjct: 165 PDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWV 224

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + + + VSWN++ISG   +G + +A +LFV ++      + Y+  S   A G+L  +
Sbjct: 225 FNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDV 284

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS------WN 174
            +G  + +   +  +E  V++   LIDMY KCGS+ DA  VF    D + I+      WN
Sbjct: 285 NMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVF----DTNFINCGVNTPWN 340

Query: 175 SVIAASARNG----NLELAFGFLHRLPNPDTISYNEVINGIA-----QFGDI-------- 217
           ++I+  +++G     LEL           D  +Y  V N IA     QFG +        
Sbjct: 341 AMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKC 400

Query: 218 -----------------------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
                                  ED   +   M   +  SW +++T Y   +   EAL  
Sbjct: 401 GLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALAT 460

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F  M+ +    +++TFS++L   A L  L +G  +H  + K GLD    + SAL+DMY+K
Sbjct: 461 FCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAK 520

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG +  A  +F  +   ++V+W A+I+GYA++G +   ++LF +++ +  ++ ++VT L 
Sbjct: 521 CGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRME-LSGIKANAVTLLC 579

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           VL ACSH  +  + +  YF+ M   YG+ P +EH   +I L+G+ G +  A   IR++  
Sbjct: 580 VLFACSHGGMVEEGLF-YFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPM 638

Query: 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494
               +VW+ LL       ++++  I+A +++ +  +    YV+L N Y   G+++    +
Sbjct: 639 EPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSL 698

Query: 495 RNFMRERGLRKEAGCSWIEVE 515
           RN M+++G++KE G SWI V+
Sbjct: 699 RNVMKDQGVKKEPGYSWISVK 719



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 201/421 (47%), Gaps = 49/421 (11%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCYILKSGF----LSNVFVSTALMGFYRKINSLADAHKMF 61
           L  +LR  ++ G     + +H  +LKS F    L  +F   A +  Y K +    A  +F
Sbjct: 67  LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHV--YSKCSEFRAACGVF 124

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            E+PQ +V SW  +I G  + G +      F E+  S I  D +++++ + +C  L SL+
Sbjct: 125 DEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLE 184

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           LG  +H++IV       + ++  L++MY K GS+ED+  VF  M + + +SWN++I+   
Sbjct: 185 LGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCT 244

Query: 182 RNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGD---------------IEDAIM 222
            NG    AF    R+ N    P+  +   V   + +  D               IE  ++
Sbjct: 245 SNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVL 304

Query: 223 ILSSMPSPNS----------------------SSWNSILTGYVNRNRVPEALHLFGEMQS 260
           + +++    S                      + WN++++GY       EAL L+ +M  
Sbjct: 305 VGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQ 364

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV-VASALLDMYSKCGQVE 319
             +  D YT+ ++ + IA   +L +G ++H  V+K GLD  +V V +A+ D YSKCG +E
Sbjct: 365 NGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLE 424

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
               +F  +  +++V+W  ++T Y+++    + +  F  ++      P+  TF +VL +C
Sbjct: 425 DVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMRE-EGFAPNQFTFSSVLISC 483

Query: 380 S 380
           +
Sbjct: 484 A 484



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 117/247 (47%), Gaps = 8/247 (3%)

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
           +N   +  ++  +   A  +   MP  N  SW  ++ G        +    F EM +  +
Sbjct: 104 FNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGI 163

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             D++ +S ++    GL +L  G ++H+ ++ +G    I V+++LL+MY+K G +E +  
Sbjct: 164 LPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYW 223

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-T 382
           +F  +   N V+WNAMI+G   NG   +  +LF ++K      P+  T ++V  A     
Sbjct: 224 VFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKN-GACTPNMYTLVSVSKAVGKLV 282

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV--V 440
           D+   K     ++   + GI+  V    ++I +  + G +  A R + +  F + GV   
Sbjct: 283 DVNMGK---EVQNCASELGIEGNVLVGTALIDMYSKCGSLHDA-RSVFDTNFINCGVNTP 338

Query: 441 WRALLSA 447
           W A++S 
Sbjct: 339 WNAMISG 345


>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 160/532 (30%), Positives = 268/532 (50%), Gaps = 48/532 (9%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKIN-SLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q H +++KSG  ++  V  +L+  Y K+   + +  ++F  +     +SW S++SGYV S
Sbjct: 81  QFHAHVVKSGLETDRNVGNSLLSLYFKLGPDMRETRRVFDGMFVKDAISWTSMMSGYVAS 140

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            ++ KAL +FVE+    +  + ++ +SA+ AC +LG ++LG   H  ++ +  E   VI+
Sbjct: 141 KEHVKALEVFVEMVSFGLQPNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWNHVIS 200

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN------------------- 183
           + L  MYG      DA  VF EM + D+I W +V++A ++N                   
Sbjct: 201 STLAYMYGVNKEPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGL 260

Query: 184 -------GNLELAFGFLHRLPNPDTISYNEVINGI--------------AQFGDIEDAIM 222
                  G +  A G L RL     I    + NGI               + G + +A  
Sbjct: 261 VPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREARQ 320

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           + + MP  N  SW+++L GY       +A+ +F EM+ KD+    Y F T+L   AGL+A
Sbjct: 321 VFNGMPRKNIVSWSALLGGYCQNGEHEKAIEMFREMEEKDL----YCFGTVLKACAGLAA 376

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           +  G  IH   +++G   +++V SAL+D+Y K G ++ A  ++  +  +N++TWNAM++ 
Sbjct: 377 VRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDYASRVYSKMSVRNMITWNAMLSA 436

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
            A+NG   + +  F  +   + ++PD ++F+ VL AC HT +  ++   YF  M K YGI
Sbjct: 437 LAQNGRGEEAVSFFNDM-VKKGIKPDYISFIAVLTACGHTGL-VEEGRNYFALMAKSYGI 494

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDL-DVARISA 461
           KP  EH   MI L+G+ G    A+ ++      +   +W  LL    A +D   +A   A
Sbjct: 495 KPGTEHYSCMIDLLGRAGLFEEAENLLDRAECRNDASLWGVLLGPCAANTDASSIAERIA 554

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
             +++LE      YV+L N+Y + G    A  +R  M  RG+ K  G SWI+
Sbjct: 555 KRMMELEPKYHMSYVLLSNMYKAIGRHGDALKIRKLMVRRGVAKTVGQSWID 606



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/405 (25%), Positives = 184/405 (45%), Gaps = 40/405 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++ L   ++A  +LG     +  H  ++  GF  N  +S+ L   Y       DA ++
Sbjct: 160 PNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKEPVDARRV 219

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGS 119
           F E+P+P V+ W +++S + ++  Y +AL LF  + R + +  D  +F + L ACG L  
Sbjct: 220 FDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRR 279

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+ G  IH K++   +   VV+ + L+DMYGK GSV +A  VF  M  K+I+SW++++  
Sbjct: 280 LKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGG 339

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQ-------------------FGD--IE 218
             +NG  E A      +   D   +  V+   A                    FG+  +E
Sbjct: 340 YCQNGEHEKAIEMFREMEEKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVE 399

Query: 219 DAIM--------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
            A++              + S M   N  +WN++L+      R  EA+  F +M  K + 
Sbjct: 400 SALIDLYGKSGCIDYASRVYSKMSVRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIK 459

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADS 323
            D  +F  +L+       +  G    + + K  G+       S ++D+  + G  E A++
Sbjct: 460 PDYISFIAVLTACGHTGLVEEGRNYFALMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAEN 519

Query: 324 MF-RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           +  R+ CR +   W  ++   A N D + + E     K + +L+P
Sbjct: 520 LLDRAECRNDASLWGVLLGPCAANTDASSIAERIA--KRMMELEP 562



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 180/406 (44%), Gaps = 49/406 (12%)

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+   A+ +      SEI A +  + S L  C ++ S   G+  H+ +VK  LE    + 
Sbjct: 39  GQLTDAIRILNSTHSSEISAKSNLYASLLQTCRKVFSFIHGLQFHAHVVKSGLETDRNVG 98

Query: 143 NCLIDMYGKCG-SVEDAIGVFGEMIDKDIISWNSV----IAASARNGNLELAFGFLHRLP 197
           N L+ +Y K G  + +   VF  M  KD ISW S+    +A+      LE+    +    
Sbjct: 99  NSLLSLYFKLGPDMRETRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVSFGL 158

Query: 198 NPDTISYNEVINGIAQFGDIE-----------------------------------DAIM 222
            P+  + +  +    + G++                                    DA  
Sbjct: 159 QPNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKEPVDARR 218

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLS 281
           +   MP P+   W ++L+ +   +   EAL LF  M + K +  D  TF T+L+    L 
Sbjct: 219 VFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLR 278

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  IH  +I  G+ +++VV S+LLDMY K G V  A  +F  + RKN+V+W+A++ 
Sbjct: 279 RLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLG 338

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GY +NG+  K IE+F +++     + D   F  VL AC+   +   ++ +         G
Sbjct: 339 GYCQNGEHEKAIEMFREME-----EKDLYCFGTVLKACA--GLAAVRLGKEIHGQYVRRG 391

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
               V    ++I L G+ G +  A R+  ++   +  + W A+LSA
Sbjct: 392 CFGNVIVESALIDLYGKSGCIDYASRVYSKMSVRNM-ITWNAMLSA 436



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/229 (20%), Positives = 106/229 (46%), Gaps = 5/229 (2%)

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
           A + L+   S ++ +  S +       ++ +A+ +     S ++      ++++L     
Sbjct: 13  ASLCLTPSNSSSAPTKQSRILELCKLGQLTDAIRILNSTHSSEISAKSNLYASLLQTCRK 72

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG-QVEIADSMFRSLCRKNLVTWNA 338
           + +   G+  H+ V+K GL+    V ++LL +Y K G  +     +F  +  K+ ++W +
Sbjct: 73  VFSFIHGLQFHAHVVKSGLETDRNVGNSLLSLYFKLGPDMRETRRVFDGMFVKDAISWTS 132

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           M++GY  + +  K +E+F ++ +   LQP+  T  + + AC   ++   ++   F  +  
Sbjct: 133 MMSGYVASKEHVKALEVFVEMVSF-GLQPNKFTLSSAVKAC--FELGEVRLGRCFHGVVI 189

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
            +G +       ++  + G   E   A+R+  E+      + W A+LSA
Sbjct: 190 THGFEWNHVISSTLAYMYGVNKEPVDARRVFDEMPEPDV-ICWTAVLSA 237


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 170/570 (29%), Positives = 291/570 (51%), Gaps = 61/570 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDT---YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
           P+ + L  ++ A S+L         +Q+H Y L+ G L N F+   L+  Y K+  LA +
Sbjct: 197 PSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL-NSFIINTLVAMYGKLGKLASS 255

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
             +        +V+WN+++S   Q+ +  +AL    E+    +  D ++ +S L AC  L
Sbjct: 256 KVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHL 315

Query: 118 GSLQLGMAIHSKIVKY-SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
             L+ G  +H+  +K  SL+    + + L+DMY  C  V     VF  M D+ I  WN++
Sbjct: 316 EMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAM 375

Query: 177 IAASARNGN----------LELAFGFL------------------------------HRL 196
           IA  ++N +          +E + G L                               R 
Sbjct: 376 IAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRG 435

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
            + D    N +++  ++ G I+ A+ I   M   +  +WN+++TGYV      +AL L  
Sbjct: 436 LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLH 495

Query: 257 EMQSKD-----------VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
           +MQ+ +           +  +  T  T+L   A LSAL  G  IH+  IK  L   + V 
Sbjct: 496 KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG 555

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           SAL+DMY+KCG ++++  +F  + +KN++TWN +I  Y  +G+  + I+L  ++  V+ +
Sbjct: 556 SALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLL-RMMMVQGV 614

Query: 366 QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425
           +P+ VTF++V AACSH+ +  D+    F  M  DYG++P+ +H   ++ L+G+ G +  A
Sbjct: 615 KPNEVTFISVFAACSHSGM-VDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEA 673

Query: 426 QRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483
            +++  +   F   G  W +LL AS   ++L++  I+A  +I+LE +    YV+L N+Y+
Sbjct: 674 YQLMNMMPRDFNKAG-AWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYS 732

Query: 484 SHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
           S G WD A+ +R  M+E+G+RKE GCSWIE
Sbjct: 733 SAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 199/435 (45%), Gaps = 56/435 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGF-LSNVFVSTALMGFYRKINSLADAHK 59
           P+ Y    LL+A +DL      +Q+H ++ K G+ + +V V+  L+  YRK       +K
Sbjct: 95  PDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYK 154

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  I + + VSWNSLIS      K+  AL  F  +    +   +++  S + AC  L  
Sbjct: 155 VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL-P 213

Query: 120 LQLGMAIHSKIVKYSLERGVV---IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           +  G+ +  ++  Y L +G +   I N L+ MYGK G +  +  + G    +D+++WN+V
Sbjct: 214 MPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTV 273

Query: 177 IAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQF----------------GD 216
           +++  +N  L  A  +L  +      PD  + + V+   +                  G 
Sbjct: 274 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGS 333

Query: 217 IEDAIMILSS--------------------MPSPNSSSWNSILTGYVNRNRVPEALHLF- 255
           +++   + S+                    M       WN+++ GY       EAL LF 
Sbjct: 334 LDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI 393

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
           G  +S  +  +  T + ++       A +    IH  V+K+GLD    V + L+DMYS+ 
Sbjct: 394 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL 453

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR----------DL 365
           G+++IA  +F  +  ++LVTWN MITGY  +      + L  +++ +            L
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513

Query: 366 QPDSVTFLNVLAACS 380
           +P+S+T + +L +C+
Sbjct: 514 KPNSITLMTILPSCA 528



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 159/351 (45%), Gaps = 43/351 (12%)

Query: 72  WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIV 131
           W  L+   V+S   R+A+  +V++    I  D Y+F + L A   L  ++LG  IH+ + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 132 KYSLE-RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF 190
           K+      V +AN L+++Y KCG       VF  + +++ +SWNS+I++       E+A 
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 191 GFLH----------------------RLPNPDTISYNE---------------VINGI-- 211
                                      LP P+ +   +               +IN +  
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA 244

Query: 212 --AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
              + G +  + ++L S    +  +WN++L+      ++ EAL    EM  + V  DE+T
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 304

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSL 328
            S++L   + L  L  G  +H+  +K G LD +  V SAL+DMY  C QV     +F  +
Sbjct: 305 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM 364

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
             + +  WNAMI GY++N    + + LF  ++    L  +S T   V+ AC
Sbjct: 365 FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC 415



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 2/152 (1%)

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
           W  +L   V  N + EA+  + +M    +  D Y F  +L  +A L  +  G  IH+ V 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 295 KQGLDA-SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
           K G    S+ VA+ L+++Y KCG       +F  +  +N V+WN++I+           +
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 354 ELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
           E F  +    +++P S T ++V+ ACS+  +P
Sbjct: 185 EAFRCMLD-ENVEPSSFTLVSVVTACSNLPMP 215


>gi|413938252|gb|AFW72803.1| hypothetical protein ZEAMMB73_565260 [Zea mays]
          Length = 709

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 156/531 (29%), Positives = 282/531 (53%), Gaps = 16/531 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+    +++A      +   + +H Y++  GF  + FV  +L+  Y K+  +A A ++
Sbjct: 136 PNEFTAAAVVQACGLARDERLARMVHGYLVAGGFCDDPFVLGSLVNMYAKVGDVASARRL 195

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            + +P   VVSW +++SG V +    +AL +F+ +    +  +  +  S + AC  +G+ 
Sbjct: 196 LLGLPCRDVVSWTAIVSGCVLNAMLEEALGVFLMMLEDGVLPNNVTMLSVIQACALMGAS 255

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI--------DKDIIS 172
           +L   +H+ +V   LE    + N LI MY K G VE+AI +F            ++D+++
Sbjct: 256 ELFGPVHALVVLLELEHDASVVNSLIMMYAKNGFVEEAIRLFKGFYLKTGSVCSNEDVLA 315

Query: 173 ---WNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
              +   I+ S +NG   L    +     P     N ++   A+F  I+ A+++   M  
Sbjct: 316 AVLYGCTISGSVKNGE-GLHAHTIKMGAFPSISVENSLMGMYARFEQIDAALLVFEGMEV 374

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSK---DVPMDEYTFSTMLSGIAGLSALTWG 286
            +  SWN+I++     +RV EA+ +F  + +     +  D  T  +ML   +    L  G
Sbjct: 375 KDIVSWNTIISCLAKTDRVNEAMDIFSVLHAAAGGGLAPDFVTVLSMLQACSNAGLLHQG 434

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
            ++H  V+K G    + + +AL+ MY+K G+++ A+ +F  +  K+LV+WN+MI  Y  +
Sbjct: 435 QMLHGYVMKSGFVYDVSICNALISMYAKLGRIDFAEMIFERMDIKDLVSWNSMINAYGMH 494

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           GD    + +F QLK      P+++TF++V++ACSH+ +   +  + FESM +D+GI+P++
Sbjct: 495 GDGHSALRVFHQLKDAGTPAPNAITFVSVISACSHSGL-VSEGHKCFESMGRDHGIEPSM 553

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
           +H   ++ L+G+ G    A++ IR++       +W  LL+A     ++D+A  +A E+  
Sbjct: 554 DHYACVVDLLGRSGRFAEAEQFIRDMPVRPDSTIWGPLLAACQLHGNVDLAEKAAKELSA 613

Query: 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           LE +SD   V L N Y S G W  A+ +R+ MR  GLRKE G S+++V  V
Sbjct: 614 LEPESDIWRVSLSNTYASVGRWRDAAKIRSEMRRVGLRKETGWSFVDVGGV 664



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 115/472 (24%), Positives = 215/472 (45%), Gaps = 31/472 (6%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSN----VFVSTALMGFYRKINSLADAHKMFVEI 64
           LLR +++         LH  +LKSG L +    +  + +L+  Y +   L+ A ++  E+
Sbjct: 29  LLRGAAERRDTALTSALHAALLKSGALRSRQAPLAAANSLLHAYLQCGLLSRALRLLDEM 88

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVEL--------ERSEIYADAYSFTSA--LAAC 114
           P+    ++  LIS + + G    AL  F+++        E  +       FT+A  + AC
Sbjct: 89  PRRDAATYAPLISAHCRLGAPLDALRAFLDMLAWGCSDEEGVDDVVRPNEFTAAAVVQAC 148

Query: 115 GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN 174
           G     +L   +H  +V         +   L++MY K G V  A  +   +  +D++SW 
Sbjct: 149 GLARDERLARMVHGYLVAGGFCDDPFVLGSLVNMYAKVGDVASARRLLLGLPCRDVVSWT 208

Query: 175 SVIAASARNGNLELAFG-FLHRLPN---PDTISYNEVINGIAQFGDIE-----DAIMILS 225
           ++++    N  LE A G FL  L +   P+ ++   VI   A  G  E      A+++L 
Sbjct: 209 AIVSGCVLNAMLEEALGVFLMMLEDGVLPNNVTMLSVIQACALMGASELFGPVHALVVLL 268

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGE--MQSKDVPMDEYTFSTMLSGIAGLSAL 283
            +   ++S  NS++  Y     V EA+ LF    +++  V  +E   + +L G     ++
Sbjct: 269 ELEH-DASVVNSLIMMYAKNGFVEEAIRLFKGFYLKTGSVCSNEDVLAAVLYGCTISGSV 327

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H+  IK G   SI V ++L+ MY++  Q++ A  +F  +  K++V+WN +I+  
Sbjct: 328 KNGEGLHAHTIKMGAFPSISVENSLMGMYARFEQIDAALLVFEGMEVKDIVSWNTIISCL 387

Query: 344 ARNGDLTKVIELFEQLKTVR--DLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           A+   + + +++F  L       L PD VT L++L ACS+  +      +         G
Sbjct: 388 AKTDRVNEAMDIFSVLHAAAGGGLAPDFVTVLSMLQACSNAGLLHQ--GQMLHGYVMKSG 445

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD 453
               V  C ++I +  + G +  A+ +   +      V W ++++A G   D
Sbjct: 446 FVYDVSICNALISMYAKLGRIDFAEMIFERMDIKDL-VSWNSMINAYGMHGD 496


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 170/570 (29%), Positives = 291/570 (51%), Gaps = 61/570 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDT---YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
           P+ + L  ++ A S+L         +Q+H Y L+ G L N F+   L+  Y K+  LA +
Sbjct: 197 PSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL-NSFIINTLVAMYGKLGKLASS 255

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
             +        +V+WN+++S   Q+ +  +AL    E+    +  D ++ +S L AC  L
Sbjct: 256 KVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHL 315

Query: 118 GSLQLGMAIHSKIVKY-SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
             L+ G  +H+  +K  SL+    + + L+DMY  C  V     VF  M D+ I  WN++
Sbjct: 316 EMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAM 375

Query: 177 IAASARNGN----------LELAFGFL------------------------------HRL 196
           IA  ++N +          +E + G L                               R 
Sbjct: 376 IAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRG 435

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
            + D    N +++  ++ G I+ A+ I   M   +  +WN+++TGYV      +AL L  
Sbjct: 436 LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLH 495

Query: 257 EMQSKD-----------VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
           +MQ+ +           +  +  T  T+L   A LSAL  G  IH+  IK  L   + V 
Sbjct: 496 KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG 555

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           SAL+DMY+KCG ++++  +F  + +KN++TWN +I  Y  +G+  + I+L  ++  V+ +
Sbjct: 556 SALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLL-RMMMVQGV 614

Query: 366 QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425
           +P+ VTF++V AACSH+ +  D+    F  M  DYG++P+ +H   ++ L+G+ G +  A
Sbjct: 615 KPNEVTFISVFAACSHSGM-VDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEA 673

Query: 426 QRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483
            +++  +   F   G  W +LL AS   ++L++  I+A  +I+LE +    YV+L N+Y+
Sbjct: 674 YQLMNMMPRDFNKAG-AWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYS 732

Query: 484 SHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
           S G WD A+ +R  M+E+G+RKE GCSWIE
Sbjct: 733 SAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 199/435 (45%), Gaps = 56/435 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGF-LSNVFVSTALMGFYRKINSLADAHK 59
           P+ Y    LL+A +DL      +Q+H ++ K G+ + +V V+  L+  YRK       +K
Sbjct: 95  PDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYK 154

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  I + + VSWNSLIS      K+  AL  F  +    +   +++  S + AC  L  
Sbjct: 155 VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL-P 213

Query: 120 LQLGMAIHSKIVKYSLERGVV---IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           +  G+ +  ++  Y L +G +   I N L+ MYGK G +  +  + G    +D+++WN+V
Sbjct: 214 MPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTV 273

Query: 177 IAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQF----------------GD 216
           +++  +N  L  A  +L  +      PD  + + V+   +                  G 
Sbjct: 274 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGS 333

Query: 217 IEDAIMILSS--------------------MPSPNSSSWNSILTGYVNRNRVPEALHLF- 255
           +++   + S+                    M       WN+++ GY       EAL LF 
Sbjct: 334 LDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI 393

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
           G  +S  +  +  T + ++       A +    IH  V+K+GLD    V + L+DMYS+ 
Sbjct: 394 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL 453

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR----------DL 365
           G+++IA  +F  +  ++LVTWN MITGY  +      + L  +++ +            L
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513

Query: 366 QPDSVTFLNVLAACS 380
           +P+S+T + +L +C+
Sbjct: 514 KPNSITLMTILPSCA 528



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 159/351 (45%), Gaps = 43/351 (12%)

Query: 72  WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIV 131
           W  L+   V+S   R+A+  +V++    I  D Y+F + L A   L  ++LG  IH+ + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 132 KYSLE-RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF 190
           K+      V +AN L+++Y KCG       VF  + +++ +SWNS+I++       E+A 
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 191 GFLH----------------------RLPNPDTISYNE---------------VINGI-- 211
                                      LP P+ +   +               +IN +  
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA 244

Query: 212 --AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
              + G +  + ++L S    +  +WN++L+      ++ EAL    EM  + V  DE+T
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 304

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSL 328
            S++L   + L  L  G  +H+  +K G LD +  V SAL+DMY  C QV     +F  +
Sbjct: 305 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM 364

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
             + +  WNAMI GY++N    + + LF  ++    L  +S T   V+ AC
Sbjct: 365 FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC 415



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 2/152 (1%)

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
           W  +L   V  N + EA+  + +M    +  D Y F  +L  +A L  +  G  IH+ V 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 295 KQGLDA-SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
           K G    S+ VA+ L+++Y KCG       +F  +  +N V+WN++I+           +
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 354 ELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
           E F  +    +++P S T ++V+ ACS+  +P
Sbjct: 185 EAFRCMLD-ENVEPSSFTLVSVVTACSNLPMP 215


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 149/475 (31%), Positives = 264/475 (55%), Gaps = 11/475 (2%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           T L GF R    + +A K+F  +P  +VVSWN++I+ YVQ  +  +A+ LF E      Y
Sbjct: 240 TMLCGFARH-GKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKETP----Y 294

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            D  S+T+ +    ++G L     +++++    +     + + LI    + G +++A  V
Sbjct: 295 KDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGLI----QNGRIDEASQV 350

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F ++  +D I WNS+IA   ++G +  A     ++P  + +S+N +I+G AQ G+++ A 
Sbjct: 351 FSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAGEMDRAT 410

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            I  +M   N  SWNS++TG++      +AL     M  +    D+ TF+  LS  A L+
Sbjct: 411 EIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLA 470

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL  G  +H  ++K G    + V++AL+ MY+KCG V+ A+ +F+ +   +L++WN++I+
Sbjct: 471 ALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLIS 530

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYA NG   +    FEQ+ +   + PD VTF+ +L+ACSH  +    V + F+ M + + 
Sbjct: 531 GYALNGYANEAFWAFEQMSSEGTV-PDEVTFIGMLSACSHAGLTNQGV-DLFKCMIEGFA 588

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I+P  EH   ++ L+G+ G +  A  ++R +   +   +W +LL+A     ++++ +I+A
Sbjct: 589 IEPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKVKANAGLWGSLLAACRVHKNMELGKIAA 648

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
             +++LE  +   Y+ L N++   G W+    +R  MRER   K  GCSWIEV+N
Sbjct: 649 LRLLELEPHNASNYITLSNMHAEAGRWEDVERLRVLMRERRAGKLPGCSWIEVQN 703



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 191/387 (49%), Gaps = 54/387 (13%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF-VELERSEI 100
            +++  + K   ++DA ++F ++ Q ++VSWN++I+GY+ +    +A  LF +  ER   
Sbjct: 52  NSMVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAER--- 108

Query: 101 YADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIG 160
             D +S+   +    + G L+    +  ++V   L+      N +I  Y K G  +DA  
Sbjct: 109 --DNFSWALMITCYTRKGMLEKARELF-ELVPDKLD--TACWNAMIAGYAKKGRFDDAEK 163

Query: 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------------------------ 196
           VF +M  KD++S+NS++A   +NG + LA  F  R+                        
Sbjct: 164 VFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSA 223

Query: 197 -------PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
                  P+P+ +S+  ++ G A+ G I +A  +   MP  N  SWN+++  YV   ++ 
Sbjct: 224 WELFEKIPDPNAVSWVTMLCGFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQID 283

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
           EA+ LF E   KD      +++TM++G   +  L     +++ +  + + A   + S L+
Sbjct: 284 EAVKLFKETPYKDC----VSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGLI 339

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
               + G+++ A  +F  L +++ + WN+MI GY ++G +++ + LF Q+        ++
Sbjct: 340 ----QNGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPV-----KNA 390

Query: 370 VTFLNVLAACSHTDIPFDKVSEYFESM 396
           V++  +++  +      D+ +E FE+M
Sbjct: 391 VSWNTMISGYAQAG-EMDRATEIFEAM 416



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 115/225 (51%), Gaps = 7/225 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++      L + ++L      +QLH  ILKSG+++++FVS AL+  Y K   +  A K+
Sbjct: 454 PDQSTFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKV 513

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +I    ++SWNSLISGY  +G   +A   F ++       D  +F   L+AC   G  
Sbjct: 514 FKDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLT 573

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVF-GEMIDKDIISWNSVIA 178
             G+ +   +++ +++E      +CL+D+ G+ G +E+A  +  G  +  +   W S++A
Sbjct: 574 NQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKVKANAGLWGSLLA 633

Query: 179 ASARNGNLEL----AFGFLHRLPNPDTISYNEVINGIAQFGDIED 219
           A   + N+EL    A   L   P+ +  +Y  + N  A+ G  ED
Sbjct: 634 ACRVHKNMELGKIAALRLLELEPH-NASNYITLSNMHAEAGRWED 677



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 118/240 (49%), Gaps = 12/240 (5%)

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196
           + V   N  I   GK G +++A  VF  +I K+  ++NS++   A+NG +  A     ++
Sbjct: 15  KNVFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKM 74

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
              + +S+N +I G      +E+A  +   M   ++ SW  ++T Y  +  + +A  LF 
Sbjct: 75  SQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKARELFE 134

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
            +  K   +D   ++ M++G A              V ++     +V  +++L  Y++ G
Sbjct: 135 LVPDK---LDTACWNAMIAGYAKKGRFDDA----EKVFEKMPVKDLVSYNSMLAGYTQNG 187

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           ++ +A   F  +  +N+V+WN M+ G+  N DL    ELFE++       P++V+++ +L
Sbjct: 188 KMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIP-----DPNAVSWVTML 242



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 152/337 (45%), Gaps = 30/337 (8%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL 95
            +V   TALM    +   + +A ++F ++ +   + WNS+I+GY QSG+  +ALNLF   
Sbjct: 326 KDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRMSEALNLF--- 382

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
            R     +A S+ + ++   Q G +       ++I +    R V+  N LI  + + G  
Sbjct: 383 -RQMPVKNAVSWNTMISGYAQAGEMDRA----TEIFEAMGVRNVISWNSLITGFLQNGLY 437

Query: 156 EDAI------GVFGEMIDKDIISWN-------SVIAASARNGNLELAFGFLHRLPNPDTI 202
            DA+      G  G+  D+   + +       + +    +   L L  G+++     D  
Sbjct: 438 LDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELILKSGYIN-----DLF 492

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +I   A+ G ++ A  +   +   +  SWNS+++GY       EA   F +M S+ 
Sbjct: 493 VSNALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEG 552

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIA 321
              DE TF  MLS  +       G+ +  C+I+   ++      S L+D+  + G++E A
Sbjct: 553 TVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEA 612

Query: 322 DSMFRSL-CRKNLVTWNAMITG--YARNGDLTKVIEL 355
            ++ R +  + N   W +++      +N +L K+  L
Sbjct: 613 FNIVRGMKVKANAGLWGSLLAACRVHKNMELGKIAAL 649


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 170/570 (29%), Positives = 291/570 (51%), Gaps = 61/570 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDT---YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
           P+ + L  ++ A S+L         +Q+H Y L+ G L N F+   L+  Y K+  LA +
Sbjct: 110 PSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL-NSFIINTLVAMYGKLGKLASS 168

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
             +        +V+WN+++S   Q+ +  +AL    E+    +  D ++ +S L AC  L
Sbjct: 169 KVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHL 228

Query: 118 GSLQLGMAIHSKIVKY-SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
             L+ G  +H+  +K  SL+    + + L+DMY  C  V     VF  M D+ I  WN++
Sbjct: 229 EMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAM 288

Query: 177 IAASARNGN----------LELAFGFL------------------------------HRL 196
           IA  ++N +          +E + G L                               R 
Sbjct: 289 IAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRG 348

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
            + D    N +++  ++ G I+ A+ I   M   +  +WN+++TGYV      +AL L  
Sbjct: 349 LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLH 408

Query: 257 EMQSKD-----------VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
           +MQ+ +           +  +  T  T+L   A LSAL  G  IH+  IK  L   + V 
Sbjct: 409 KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG 468

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           SAL+DMY+KCG ++++  +F  + +KN++TWN +I  Y  +G+  + I+L  ++  V+ +
Sbjct: 469 SALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLL-RMMMVQGV 527

Query: 366 QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425
           +P+ VTF++V AACSH+ +  D+    F  M  DYG++P+ +H   ++ L+G+ G +  A
Sbjct: 528 KPNEVTFISVFAACSHSGM-VDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEA 586

Query: 426 QRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483
            +++  +   F   G  W +LL AS   ++L++  I+A  +I+LE +    YV+L N+Y+
Sbjct: 587 YQLMNMMPRDFNKAG-AWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYS 645

Query: 484 SHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
           S G WD A+ +R  M+E+G+RKE GCSWIE
Sbjct: 646 SAGLWDKATEVRRNMKEQGVRKEPGCSWIE 675



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 199/435 (45%), Gaps = 56/435 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGF-LSNVFVSTALMGFYRKINSLADAHK 59
           P+ Y    LL+A +DL      +Q+H ++ K G+ + +V V+  L+  YRK       +K
Sbjct: 8   PDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYK 67

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  I + + VSWNSLIS      K+  AL  F  +    +   +++  S + AC  L  
Sbjct: 68  VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL-P 126

Query: 120 LQLGMAIHSKIVKYSLERGVV---IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           +  G+ +  ++  Y L +G +   I N L+ MYGK G +  +  + G    +D+++WN+V
Sbjct: 127 MPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTV 186

Query: 177 IAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQF----------------GD 216
           +++  +N  L  A  +L  +      PD  + + V+   +                  G 
Sbjct: 187 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGS 246

Query: 217 IEDAIMILSS--------------------MPSPNSSSWNSILTGYVNRNRVPEALHLF- 255
           +++   + S+                    M       WN+++ GY       EAL LF 
Sbjct: 247 LDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI 306

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
           G  +S  +  +  T + ++       A +    IH  V+K+GLD    V + L+DMYS+ 
Sbjct: 307 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL 366

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR----------DL 365
           G+++IA  +F  +  ++LVTWN MITGY  +      + L  +++ +            L
Sbjct: 367 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 426

Query: 366 QPDSVTFLNVLAACS 380
           +P+S+T + +L +C+
Sbjct: 427 KPNSITLMTILPSCA 441



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 145/323 (44%), Gaps = 43/323 (13%)

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE-RGVVIANCLIDMYGKCGSVEDA 158
           I  D Y+F + L A   L  ++LG  IH+ + K+      V +AN L+++Y KCG     
Sbjct: 6   IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 65

Query: 159 IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH----------------------RL 196
             VF  + +++ +SWNS+I++       E+A                            L
Sbjct: 66  YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 125

Query: 197 PNPDTISYNE---------------VINGI----AQFGDIEDAIMILSSMPSPNSSSWNS 237
           P P+ +   +               +IN +     + G +  + ++L S    +  +WN+
Sbjct: 126 PMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 185

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           +L+      ++ EAL    EM  + V  DE+T S++L   + L  L  G  +H+  +K G
Sbjct: 186 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 245

Query: 298 -LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
            LD +  V SAL+DMY  C QV     +F  +  + +  WNAMI GY++N    + + LF
Sbjct: 246 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 305

Query: 357 EQLKTVRDLQPDSVTFLNVLAAC 379
             ++    L  +S T   V+ AC
Sbjct: 306 IGMEESAGLLANSTTMAGVVPAC 328



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA-SIVVASALLDMYSKCGQVEIADSM 324
           D Y F  +L  +A L  +  G  IH+ V K G    S+ VA+ L+++Y KCG       +
Sbjct: 9   DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 68

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
           F  +  +N V+WN++I+           +E F  +    +++P S T ++V+ ACS+  +
Sbjct: 69  FDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD-ENVEPSSFTLVSVVTACSNLPM 127

Query: 385 P 385
           P
Sbjct: 128 P 128


>gi|224087027|ref|XP_002308034.1| predicted protein [Populus trichocarpa]
 gi|222854010|gb|EEE91557.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 160/556 (28%), Positives = 293/556 (52%), Gaps = 46/556 (8%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE+    +L+A SD+G     +Q+H +++KSGF  NVFV T+L+  Y +  +  +A K+F
Sbjct: 9   NEHTCVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGNFDEAEKVF 68

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +    +   N +I  Y ++G  ++A+ +F+ L    +  + Y+FT+ ++ C    +++
Sbjct: 69  NGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTC----NVE 124

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  +H   VKY +     + N +I MYGK G VE+A  +F  M  K++ISW ++I+   
Sbjct: 125 EGKQLHGLAVKYGVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLISWTALISGYT 184

Query: 182 RNG-----------------------------------NLELA---FGFLHRLPNPDTIS 203
           RNG                                   NL+L     G + +L  P  I+
Sbjct: 185 RNGYGEKAVDGFLELRGCGVECDSGLLATILDGCSECKNLDLGTQIHGLVIKLGYPCDIN 244

Query: 204 Y-NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF-GEMQSK 261
               +I+  A+  + + A  + + +   +++S+N+IL G++  +   E   +F  +++  
Sbjct: 245 IGTALIDLYAKCKNFQSARTVFNGLSPRSTASFNAILVGFIENDSNEEDPMVFLSQLRLA 304

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D  +FS +LS  A  ++L  G  +H+  IK G    I V++AL+ MY+KCG VE A
Sbjct: 305 GIKPDSVSFSRLLSLSANRASLVKGRGLHAYSIKTGFAGHISVSNALITMYAKCGIVEDA 364

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F S+   + ++WNA+I+ Y+ +G   K + L+++++  +   PD +T L +L AC++
Sbjct: 365 YQAFNSMSANDCISWNAIISAYSLHGQGEKALLLYQEMEE-KGFTPDEITILVILQACTY 423

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           + +  D +   F +M   YGI+P +EH   M+ L+G+ G + +A  +I    F    ++W
Sbjct: 424 SGLSEDGL-HLFNTMESKYGIQPLLEHYACMVDLLGRAGYLSQAMDIINRSPFSESTLLW 482

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R L++    C DL++ ++++  ++ L  D    YV++ N+Y   G  D AS +R  M++ 
Sbjct: 483 RTLVNVCKLCGDLNLGKLASKHLLDLSPDEAGSYVLVSNIYAGEGMIDEASKVRTTMKDL 542

Query: 502 GLRKEAGCSWIEVENV 517
            L KEAG SW+E++N+
Sbjct: 543 KLSKEAGSSWVEIDNM 558


>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
          Length = 546

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 144/507 (28%), Positives = 263/507 (51%), Gaps = 19/507 (3%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  I++ G   + F+ +  +     +++ +    +F  +  PS V WN+ I GY ++
Sbjct: 42  EQVHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSEN 101

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
                 ++LF+ ++RS+   D +++ S + AC ++  ++ G+A H   V+  +   V + 
Sbjct: 102 YSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVM 161

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
             LID+YGKCG +  A  VF EM +++++SW ++IA  A   +L  A      +P  + +
Sbjct: 162 TSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAV 221

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
           S+N +I+G  + GD+  A  +   MP  N  S+ +++ GY     +  A  +F E   +D
Sbjct: 222 SWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERD 281

Query: 263 ----------------VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV-VA 305
                           V  DE+   +++S  + + +L     +   V K  +D     V 
Sbjct: 282 VVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVI 341

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           +AL+DM +KCG ++ A  +F  + +++L+++ +M+ G + +G   + + LF ++     L
Sbjct: 342 AALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLN-EGL 400

Query: 366 QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425
            PD V F  +L ACS   +  D+   YFESM  DY I P+ +H   M+ L+G+ G +  A
Sbjct: 401 TPDDVAFTVILTACSRAGL-VDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEA 459

Query: 426 QRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485
             +++ +    +   W ALL A     D+++  + A ++ +LE  +   YV+L N+Y + 
Sbjct: 460 YELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAA 519

Query: 486 GNWDVASVMRNFMRERGLRKEAGCSWI 512
             W   S++RN MRERG+RK  GCSWI
Sbjct: 520 EQWLDVSLLRNKMRERGIRKIPGCSWI 546


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 172/567 (30%), Positives = 287/567 (50%), Gaps = 47/567 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +    + +A + L     C+ +H +++KS F S+VFV TA +  + K NS+  A K+
Sbjct: 50  PNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKV 109

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+    +WN+++SG+ QSG   KA +LF E+  +EI  D+ +  + + +     SL
Sbjct: 110 FERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSL 169

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI---DKDIISWNSVI 177
           +L  A+H+  ++  ++  V +AN  I  YGKCG ++ A  VF E I   D+ ++SWNS+ 
Sbjct: 170 KLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVF-EAIDRGDRTVVSWNSMF 228

Query: 178 AASARNGNLELAFGFLHRL-------------------PNPDTISYNEVING-------- 210
            A +  G    AFG    +                    NP+T++   +I+         
Sbjct: 229 KAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTD 288

Query: 211 ---------IAQFGDIED---AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
                    I+ +   ED   A ++   M S    SW  +++GY  +  + EAL LF  M
Sbjct: 289 QDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAM 348

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA-SIVVASALLDMYSKCGQ 317
                  D  T  +++SG     +L  G  I +     G    ++++ +AL+DMYSKCG 
Sbjct: 349 IKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGS 408

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +  A  +F +   K +VTW  MI GYA NG   + ++LF ++  + D +P+ +TFL VL 
Sbjct: 409 IHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDL-DYKPNHITFLAVLQ 467

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           AC+H+    +K  EYF  M + Y I P ++H   M+ L+G+KG++  A  +IR +     
Sbjct: 468 ACAHSG-SLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPD 526

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497
             +W ALL+A     ++ +A  +A  +  LE      YV + N+Y + G WD  + +R+ 
Sbjct: 527 AGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSI 586

Query: 498 MRERGLRKEAGCSWIEVENVAAHSSNI 524
           M++R ++K  G S I+V N   HS  +
Sbjct: 587 MKQRNIKKYPGESVIQV-NGKNHSFTV 612



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 172/401 (42%), Gaps = 45/401 (11%)

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
           SV +WN  I   V      ++L LF E++R     + ++F     AC +L  +     +H
Sbjct: 16  SVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVH 75

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
           + ++K      V +    +DM+ KC SV+ A  VF  M ++D  +WN++++   ++G+ +
Sbjct: 76  AHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTD 135

Query: 188 LAFGFLHRLP----NPDTISY-----------------------------------NEVI 208
            AF     +      PD+++                                    N  I
Sbjct: 136 KAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWI 195

Query: 209 NGIAQFGDIEDAIMILSSMPSPNSS--SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
           +   + GD++ A ++  ++   + +  SWNS+   Y       +A  L+  M  ++   D
Sbjct: 196 STYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPD 255

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
             TF  + +       LT G LIHS  I  G D  I   +  + MYSK      A  +F 
Sbjct: 256 LSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFD 315

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
            +  +  V+W  MI+GYA  GD+ + + LF  +    + +PD VT L++++ C       
Sbjct: 316 IMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGE-KPDLVTLLSLISGCG--KFGS 372

Query: 387 DKVSEYFESMTKDYGIK-PTVEHCCSMIRLMGQKGEVWRAQ 426
            +  ++ ++    YG K   V  C ++I +  + G +  A+
Sbjct: 373 LETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEAR 413



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 111/219 (50%), Gaps = 10/219 (4%)

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
           ++WN  +   VNRN   E+L LF EM+      + +TF  +    A L+ +    ++H+ 
Sbjct: 18  NAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAH 77

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           +IK    + + V +A +DM+ KC  V+ A  +F  +  ++  TWNAM++G+ ++G   K 
Sbjct: 78  LIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKA 137

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK---DYGIKPTVEHC 409
             LF +++ + ++ PDSVT + ++ + S     F+K  +  E+M       G+   V   
Sbjct: 138 FSLFREMR-LNEITPDSVTVMTLIQSAS-----FEKSLKLLEAMHAVGIRLGVDVQVTVA 191

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVV-WRALLSA 447
            + I   G+ G++  A+ +   +  G   VV W ++  A
Sbjct: 192 NTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKA 230


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 159/539 (29%), Positives = 282/539 (52%), Gaps = 50/539 (9%)

Query: 23   QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            +Q+H   +KSG  S+V V+ +L+  Y K+     A ++F ++    ++SWNS+IS   QS
Sbjct: 924  KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 983

Query: 83   GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV-- 140
                +++NLF++L    +  D ++  S L AC    SL  G+ I  +I  ++L+ G +  
Sbjct: 984  SLEEESVNLFIDLLHEGLKPDHFTLASVLRACS---SLIDGLNISRQIHVHALKTGNIAD 1040

Query: 141  --IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV----IAASARNGNLELAFGFLH 194
              +A  LID+Y K G +E+A  +F    D D+  WN++    I  +     LEL F  +H
Sbjct: 1041 SFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALEL-FSLIH 1099

Query: 195  R----------------------LPNPDTISYNEVINGIA--------------QFGDIE 218
            +                      L     I  + +  G                + GD+ 
Sbjct: 1100 KSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMV 1159

Query: 219  DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
            +A ++ + + +P+  +W S+++G V+     +AL ++  M+   V  DEYTF+T++   +
Sbjct: 1160 NAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASS 1219

Query: 279  GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
             ++AL  G  +H+ VIK    +   V ++L+DMY+KCG +E A  +F+ +  +N+  WNA
Sbjct: 1220 CVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNA 1279

Query: 339  MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
            M+ G A++G+  + + LF+ +K+   ++PD V+F+ +L+ACSH  +   +  EY  SM  
Sbjct: 1280 MLVGLAQHGNAEEAVNLFKSMKS-HGIEPDRVSFIGILSACSHAGLT-SEAYEYLHSMPN 1337

Query: 399  DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
            DYGI+P +EH   ++  +G+ G V  A ++I  + F +   + RALL A     D++  +
Sbjct: 1338 DYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGK 1397

Query: 459  ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
              AA +  LE      YV+L N+Y +   WD  +  R  M+ + ++K+ G SWI+V+N+
Sbjct: 1398 RVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNM 1456



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 177/374 (47%), Gaps = 20/374 (5%)

Query: 26   HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS--- 82
            H  I+ SG   + F+S  L+  Y K  SL+ A ++F   P+  +V+WN+++  Y  S   
Sbjct: 644  HARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDS 703

Query: 83   --GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
              G  ++ L+LF  L  S       +    L  C   G L     +H   +K  LE  V 
Sbjct: 704  NDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVF 763

Query: 141  IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF---LHRLP 197
            ++  L+++Y KCG + DA  +F  M ++D++ WN ++    + G  + AF      HR  
Sbjct: 764  VSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSG 823

Query: 198  -NPDTISYNEVINGIAQFGDIED----------AIMILSSMPSPNSSSWNSILTGYVNRN 246
              PD  S   ++NG+++    E           A  +  S  +P+   WN  L+  +   
Sbjct: 824  LRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKLSECLWAG 883

Query: 247  RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
                A+  F  M   ++  D  T   +L+ +AG   L  G  +H   +K GLD+ + VA+
Sbjct: 884  DNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVAN 943

Query: 307  ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
            +L++MYSK G    A  +F  +   +L++WN+MI+  A++    + + LF  L     L+
Sbjct: 944  SLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDL-LHEGLK 1002

Query: 367  PDSVTFLNVLAACS 380
            PD  T  +VL ACS
Sbjct: 1003 PDHFTLASVLRACS 1016



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 180/393 (45%), Gaps = 46/393 (11%)

Query: 1    PNEYVLFHLLRASSDL--GWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
            P+ + L  +LRA S L  G +   +Q+H + LK+G +++ FV+T L+  Y K   + +A 
Sbjct: 1003 PDHFTLASVLRACSSLIDGLNI-SRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAE 1061

Query: 59   KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
             +F       +  WN+++ GY+     +KAL LF  + +S   +D  +  +A  ACG L 
Sbjct: 1062 FLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLV 1121

Query: 119  SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
             L  G  IH+  +K   +  + + + ++DMY KCG + +A  VF  +   D ++W S+I+
Sbjct: 1122 LLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMIS 1181

Query: 179  ASARNGNLELAFGFLHRLPN----PDTISYNEVING------------------------ 210
                NGN + A    HR+      PD  ++  +I                          
Sbjct: 1182 GCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVS 1241

Query: 211  -----------IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                        A+ G+IEDA  +   M   N + WN++L G        EA++LF  M+
Sbjct: 1242 DPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMK 1301

Query: 260  SKDVPMDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
            S  +  D  +F  +LS    AGL++  +  L HS     G++  I   S L+D   + G 
Sbjct: 1302 SHGIEPDRVSFIGILSACSHAGLTSEAYEYL-HSMPNDYGIEPEIEHYSCLVDALGRAGL 1360

Query: 318  VEIADSMFRSLCRKNLVTWNAMITGYAR-NGDL 349
            V+ AD +  ++  K   + N  + G  R  GD+
Sbjct: 1361 VQEADKVIETMPFKASASINRALLGACRIQGDV 1393



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 143/565 (25%), Positives = 235/565 (41%), Gaps = 71/565 (12%)

Query: 6    LFHLLRASSDLGWDTY------------------CQQLHCYILKSGFLSNVFVSTALMGF 47
            LF LLRAS  LG  T                    + +H Y +K G   +VFVS AL+  
Sbjct: 714  LFRLLRAS--LGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNI 771

Query: 48   YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
            Y K   + DA  +F  + +  VV WN ++ GYVQ G  ++A  LF E  RS +  D +S 
Sbjct: 772  YSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSV 831

Query: 108  TSALAACGQLGSLQ---LGMAIHSKIVKYSLERGVVIANCLIDMYGKC-------GSVED 157
               L    ++   +   L   + +   K SL        C      +C       G++E 
Sbjct: 832  QLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIEC 891

Query: 158  AIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP-----NPDTISYNEVINGIA 212
             + + G  ID D ++   V+AA A   +LEL    +H +      + D    N ++N  +
Sbjct: 892  FVNMNGLNIDYDAVTLLVVLAAVAGTDDLELG-KQVHGIAVKSGLDSDVSVANSLVNMYS 950

Query: 213  QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
            + G    A  + + M   +  SWNS+++     +   E+++LF ++  + +  D +T ++
Sbjct: 951  KMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLAS 1010

Query: 273  MLSGIAGL-SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
            +L   + L   L     IH   +K G  A   VA+ L+D+YSK G++E A+ +F++    
Sbjct: 1011 VLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDL 1070

Query: 332  NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC-------SHTDI 384
            +L  WNAM+ GY    D  K +ELF  +    + + D +T      AC           I
Sbjct: 1071 DLACWNAMMFGYIIGNDGKKALELFSLIHKSGE-KSDQITLATAAKACGCLVLLDQGKQI 1129

Query: 385  PFDKVSEYFES-MTKDYGIKPTVEHCCSMIRL------------------------MGQK 419
                +   F+S +  + GI      C  M+                           G +
Sbjct: 1130 HAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNE 1189

Query: 420  GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD-YVYVML 478
             +  R    +R+         +  L+ AS   + L+  R   A VIKL+  SD +V   L
Sbjct: 1190 DQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSL 1249

Query: 479  CNLYTSHGNWDVASVMRNFMRERGL 503
             ++Y   GN + A  +   M  R +
Sbjct: 1250 VDMYAKCGNIEDAYRLFKKMNVRNI 1274



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 101/198 (51%), Gaps = 2/198 (1%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
            P+EY    L++ASS +      +QLH  ++K   +S+ FV T+L+  Y K  ++ DA+++
Sbjct: 1206 PDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRL 1265

Query: 61   FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG-S 119
            F ++   ++  WN+++ G  Q G   +A+NLF  ++   I  D  SF   L+AC   G +
Sbjct: 1266 FKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLT 1325

Query: 120  LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
             +    +HS    Y +E  +   +CL+D  G+ G V++A  V   M  K   S N  +  
Sbjct: 1326 SEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLG 1385

Query: 180  SAR-NGNLELAFGFLHRL 196
            + R  G++E       RL
Sbjct: 1386 ACRIQGDVETGKRVAARL 1403



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 88/421 (20%), Positives = 165/421 (39%), Gaps = 87/421 (20%)

Query: 119  SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            +L LG   H++IV         ++N L+ MY KCGS+  A  VF    ++D+++WN+++ 
Sbjct: 636  NLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILG 695

Query: 179  ASA-----RNGN----------LELAFGFLHRLP-NP----------------------- 199
            A A      +GN          L  + G   R+   P                       
Sbjct: 696  AYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIK 755

Query: 200  -----DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
                 D      ++N  ++ G + DA ++   M   +   WN +L GYV      EA  L
Sbjct: 756  IGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQL 815

Query: 255  FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
            F E     +  DE++   +L+G+   S + W             D    +A     + + 
Sbjct: 816  FSEFHRSGLRPDEFSVQLILNGV---SEVNW-------------DEGKWLAD---QVQAY 856

Query: 315  CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
              ++ ++D      C      WN  ++     GD    IE F  +  + ++  D+VT L 
Sbjct: 857  AAKLSLSDDNPDVFC------WNKKLSECLWAGDNWGAIECFVNMNGL-NIDYDAVTLLV 909

Query: 375  VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
            VLAA + TD    ++ +    +    G+   V    S++ +  + G  + A+ +  ++  
Sbjct: 910  VLAAVAGTDDL--ELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKH 967

Query: 435  GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494
                + W +++S+    S              LE +S  +++ L +      ++ +ASV+
Sbjct: 968  LDL-ISWNSMISSCAQSS--------------LEEESVNLFIDLLHEGLKPDHFTLASVL 1012

Query: 495  R 495
            R
Sbjct: 1013 R 1013


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 157/535 (29%), Positives = 273/535 (51%), Gaps = 41/535 (7%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           + + LH + +KSG + +VFVS+AL+  Y K+  +    ++F ++   +VVSW ++I+G V
Sbjct: 142 FGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLV 201

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
            +G   + L  F E+ RS++  D+++F  AL A      L  G AIH++ +K   +    
Sbjct: 202 HAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSF 261

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
           + N L  MY KCG  +  + +F +M   D++SW ++I+   + G  E A     R+    
Sbjct: 262 VINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSY 321

Query: 197 --PNPDTISY---------------------------------NEVINGIAQFGDIEDAI 221
             PN  T +                                  N +I   ++ G ++ A 
Sbjct: 322 VSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSAS 381

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           ++   +   +  SW++I++ Y       EA      M+ +    +E+  S++LS    ++
Sbjct: 382 LVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMA 441

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  +H+ ++  G+D   +V SA++ MYSKCG V+ A  +F  +   ++++W AMI 
Sbjct: 442 LLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMIN 501

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYA +G   + I LFE++ +V  L+PD V F+ VL AC+H  +  D    YF  MT  Y 
Sbjct: 502 GYAEHGYSQEAINLFEKISSV-GLKPDYVMFIGVLTACNHAGM-VDLGFYYFMLMTNVYR 559

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I P+ EH   +I L+ + G +  A+ +IR + F +  VVW  LL A     D+D  R +A
Sbjct: 560 ISPSKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTA 619

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++++L+ +S   ++ L N+Y + G W  A+ +R  M+ +G+ KE G SW+ V +
Sbjct: 620 EQLLQLDPNSAGTHITLANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVND 674



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 178/372 (47%), Gaps = 45/372 (12%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYADAYSFT 108
           K   L  A  MF ++     +SW +LI+GYV +    +AL LF  +        D +  +
Sbjct: 69  KQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMIS 128

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
            AL AC    ++  G  +H   VK  L   V +++ LIDMY K G +E    VF +M+ +
Sbjct: 129 VALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTR 188

Query: 169 DIISWNSVIAASARNG-NLELAFGF---------------------------LH--RLPN 198
           +++SW ++IA     G N+E    F                           LH  +  +
Sbjct: 189 NVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIH 248

Query: 199 PDTIS--YNE---VINGIAQF----GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
             TI   ++E   VIN +A      G  +  + +   M  P+  SW ++++ YV      
Sbjct: 249 TQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEE 308

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
            A+  F  M+   V  ++YTF+ ++S  A L+A  WG  IH  V++ GL  ++ VA++++
Sbjct: 309 HAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSII 368

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR--DLQP 367
            +YSKCG ++ A  +F  + RK++++W+ +I+ Y++ G      E F+ L  +R    +P
Sbjct: 369 TLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGG---YAKEAFDYLSWMRREGPKP 425

Query: 368 DSVTFLNVLAAC 379
           +     +VL+ C
Sbjct: 426 NEFALSSVLSVC 437



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 194/416 (46%), Gaps = 52/416 (12%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV 69
           L+AS+D     + + +H   +K GF  + FV   L   Y K        ++F ++  P V
Sbjct: 232 LKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDV 291

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
           VSW +LIS YVQ G+   A+  F  + +S +  + Y+F + +++C  L + + G  IH  
Sbjct: 292 VSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGH 351

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
           +++  L   + +AN +I +Y KCG ++ A  VF  +  KDIISW+++I+  ++ G  + A
Sbjct: 352 VLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEA 411

Query: 190 FGFLHRL----PNPDTIS-----------------------------------YNEVING 210
           F +L  +    P P+  +                                   ++ +I+ 
Sbjct: 412 FDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISM 471

Query: 211 IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
            ++ G +++A  I + M   +  SW +++ GY       EA++LF ++ S  +  D   F
Sbjct: 472 YSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMF 531

Query: 271 STMLSGI--AGLSALT-WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
             +L+    AG+  L  +  ++ + V +  +  S      L+D+  + G++  A+ + RS
Sbjct: 532 IGVLTACNHAGMVDLGFYYFMLMTNVYR--ISPSKEHYGCLIDLLCRAGRLSEAEHIIRS 589

Query: 328 L-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS----VTFLNVLAA 378
           +    + V W+ ++     +GD+ +     EQL     L P+S    +T  N+ AA
Sbjct: 590 MPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQL---LQLDPNSAGTHITLANIYAA 642



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 140/283 (49%), Gaps = 12/283 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+Y    ++ + ++L    + +Q+H ++L+ G ++ + V+ +++  Y K   L  A  +
Sbjct: 324 PNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLV 383

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I +  ++SW+++IS Y Q G  ++A +    + R     + ++ +S L+ CG +  L
Sbjct: 384 FHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALL 443

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H+ ++   ++   ++ + +I MY KCGSV++A  +F  M   DIISW ++I   
Sbjct: 444 EQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGY 503

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A +G  + A     ++ +    PD + +  V+      G ++        M      SP+
Sbjct: 504 AEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPS 563

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
              +  ++       R+ EA H+   ++S     D+  +ST+L
Sbjct: 564 KEHYGCLIDLLCRAGRLSEAEHI---IRSMPFHTDDVVWSTLL 603



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 1/149 (0%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           + +  N  +  + + G +  A  +   M   +  SW +++ GYVN +   EAL LF  M 
Sbjct: 56  NMLELNSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMW 115

Query: 260 SKDVPM-DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
               P  D++  S  L   A    + +G L+H   +K GL  S+ V+SAL+DMY K G++
Sbjct: 116 VHPGPQRDQFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKI 175

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNG 347
           E    +F  +  +N+V+W A+I G    G
Sbjct: 176 EQGCRVFEKMMTRNVVSWTAIIAGLVHAG 204


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 152/475 (32%), Positives = 256/475 (53%), Gaps = 10/475 (2%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
             ++  Y +   + +A  +F    +   +SWN+L+SGYVQ GK  +A  LF  +      
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGR--- 222

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            D  S+   ++   + G     M    ++   +  R V     ++  Y + G +E+A  V
Sbjct: 223 -DVVSWNIMVSGYARRGD----MVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRV 277

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F  M +++ +SWN+++AA  +   ++ A    + +P  +  S+N ++ G AQ G +E+A 
Sbjct: 278 FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAK 337

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +  +MP  ++ SW ++L  Y       E L LF EM      ++   F+ +LS  A ++
Sbjct: 338 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 397

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL  GM +H  +I+ G      V +ALL MY KCG +E A + F  +  +++V+WN MI 
Sbjct: 398 ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIA 457

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYAR+G   + +E+F+ ++T    +PD +T + VLAACSH+ +  +K   YF SM  D+G
Sbjct: 458 GYARHGFGKEALEIFDMMRTT-STKPDDITLVGVLAACSHSGL-VEKGISYFYSMHHDFG 515

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           +    EH   MI L+G+ G +  A  +++++ F     +W ALL AS    + ++ R +A
Sbjct: 516 VTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAA 575

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++ +LE ++  +YV+L N+Y S G W  A  MR  M ERG++K  G SWIEV+N
Sbjct: 576 EKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQN 630



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 171/345 (49%), Gaps = 23/345 (6%)

Query: 38  VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER 97
           V  S   +  + +   +ADA ++F  +P+ S  ++N++++GY  +G+   A +LF  + R
Sbjct: 38  VIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR 97

Query: 98  SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED 157
                D YS+ + L A     SL     +  ++      R  V  N +I  +   G V  
Sbjct: 98  P----DNYSYNTLLHALAVSSSLADARGLFDEMPV----RDSVTYNVMISSHANHGLVSL 149

Query: 158 AIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDI 217
           A   F    +KD +SWN ++AA  RNG +E A G  +     D IS+N +++G  Q+G +
Sbjct: 150 ARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKM 209

Query: 218 EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277
            +A  +   MP  +  SWN +++GY  R  + EA  LF     +DV    +T++ ++SG 
Sbjct: 210 SEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGY 265

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVA-SALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
           A       GML  +  +   +     V+ +A++  Y +   ++ A  +F  +  +N+ +W
Sbjct: 266 A-----QNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 320

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           N M+TGYA+ G L +   +F+ +      Q D+V++  +LAA S 
Sbjct: 321 NTMLTGYAQAGMLEEAKAVFDTMP-----QKDAVSWAAMLAAYSQ 360



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 101/195 (51%), Gaps = 4/195 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV     ++  Y +   L +A  +F  +PQ   VSW ++++ Y Q G   + L LF+E+ 
Sbjct: 316 NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG 375

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           R   + +  +F   L+ C  + +L+ GM +H ++++     G  + N L+ MY KCG++E
Sbjct: 376 RCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNME 435

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIA 212
           DA   F EM ++D++SWN++IA  AR+G  + A      +      PD I+   V+   +
Sbjct: 436 DARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACS 495

Query: 213 QFGDIEDAIMILSSM 227
             G +E  I    SM
Sbjct: 496 HSGLVEKGISYFYSM 510



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 115/244 (47%), Gaps = 35/244 (14%)

Query: 135 LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH 194
           LE  V+ +N  I  + + G V DA  +F  M  +   ++N+++A  + NG L LA     
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 195 RLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
            +P PD  SYN +++ +A    + DA  +   MP  +S ++N +++ + N   V  A H 
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHY 153

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTW-GMLIHSCVIKQG------------LDAS 301
           F     KD                   A++W GML  +  ++ G             +  
Sbjct: 154 FDLAPEKD-------------------AVSWNGML--AAYVRNGRVEEARGLFNSRTEWD 192

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
            +  +AL+  Y + G++  A  +F  +  +++V+WN M++GYAR GD+ +   LF+    
Sbjct: 193 AISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDA-AP 251

Query: 362 VRDL 365
           VRD+
Sbjct: 252 VRDV 255



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 2/167 (1%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QLH  ++++G+    FV  AL+  Y K  ++ DA   F E+ +  VVSWN++I+GY + G
Sbjct: 404 QLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHG 463

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA-IHSKIVKYSLERGVVIA 142
             ++AL +F  +  +    D  +    LAAC   G ++ G++  +S    + +       
Sbjct: 464 FGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHY 523

Query: 143 NCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLEL 188
            C+ID+ G+ G + +A  +  +M  + D   W +++ AS  + N EL
Sbjct: 524 TCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPEL 570


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 155/557 (27%), Positives = 275/557 (49%), Gaps = 79/557 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++Y L  +LRA S L      + +HCY +K    +N+FV+T L+  Y K   L +A  +
Sbjct: 132 PSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYL 191

Query: 61  FVEIP-QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F  +P + + V W ++++GY Q+G+  KA+  F E+    + ++ ++F S L AC  + +
Sbjct: 192 FFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISA 251

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
              G  +H  I+       V + + L+DMY KCG +  A  +   M   D++ WNS+I  
Sbjct: 252 YAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVG 311

Query: 180 SARNGNLELAFGFLHRLPNPD--------------------------------------- 200
              +G +E A    H++ N D                                       
Sbjct: 312 CVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDAC 371

Query: 201 -TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
            T+S N +++  A+ G++  A+ + + +   +  SW S++TGYV+     +AL LF +M+
Sbjct: 372 KTVS-NALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMR 430

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           +  V +D++  + + S  A L+ + +G  +H+  IK    + +   ++L+ MY+KCG +E
Sbjct: 431 TARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLE 490

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F S+  +N+++W A+I GYA+NG       L E  ++                  
Sbjct: 491 DAIRVFDSMETRNVISWTAIIVGYAQNG-------LVETGQS------------------ 525

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
                       YFESM K YGIKP  +H   MI L+G+ G++  A+ ++  +       
Sbjct: 526 ------------YFESMEKVYGIKPASDHYACMIDLLGRAGKINEAEHLLNRMDVEPDAT 573

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W++LLSA     +L++   +   +IKLE  +   YV+L N+++  G W+ A+ +R  M+
Sbjct: 574 IWKSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMK 633

Query: 500 ERGLRKEAGCSWIEVEN 516
             G+ KE G SWIE+++
Sbjct: 634 TMGINKEPGYSWIEMKS 650



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 187/386 (48%), Gaps = 42/386 (10%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD 103
           ++  Y  + +L +A K+F E P  + ++W+SL+SGY ++G   + L  F ++        
Sbjct: 74  MISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPS 133

Query: 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
            Y+  S L AC  L  L  G  IH   +K  LE  + +A  L+DMY KC  + +A  +F 
Sbjct: 134 QYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFF 193

Query: 164 EMID-KDIISWNSVIAASARNGNLELAFGFLHRLPN------------------------ 198
            + D K+ + W +++   A+NG    A      + N                        
Sbjct: 194 SLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYA 253

Query: 199 ---------------PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYV 243
                          P+    + +++  A+ GD+  A MIL +M   +   WNS++ G V
Sbjct: 254 FGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCV 313

Query: 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV 303
               + EAL LF +M ++D+ +D++T+ ++L  +A    L  G  +HS  IK G DA   
Sbjct: 314 THGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKT 373

Query: 304 VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363
           V++AL+DMY+K G +  A  +F  +  K++++W +++TGY  NG   K ++LF  ++T R
Sbjct: 374 VSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTAR 433

Query: 364 DLQPDSVTFLNVLAACSH-TDIPFDK 388
            +  D      V +AC+  T I F +
Sbjct: 434 -VDLDQFVVACVFSACAELTVIEFGR 458



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 122/208 (58%), Gaps = 2/208 (0%)

Query: 174 NSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS 233
           N +++  ++NG ++ A     ++P  D  ++N +I+  A  G++ +A  + +  P  NS 
Sbjct: 41  NQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNSI 100

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           +W+S+++GY       E L  F +M S      +YT  ++L   + LS L  G +IH   
Sbjct: 101 TWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYA 160

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC-RKNLVTWNAMITGYARNGDLTKV 352
           IK  L+A+I VA+ L+DMYSKC  +  A+ +F SL  RKN V W AM+TGYA+NG+  K 
Sbjct: 161 IKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKA 220

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACS 380
           I+ F++++  + ++ +  TF ++L AC+
Sbjct: 221 IQCFKEMRN-QGMESNHFTFPSILTACT 247



 Score = 38.5 bits (88), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
           ++ LL   SK G+V+ A  +F  +  ++  TWN MI+ YA  G+L +  +LF +
Sbjct: 40  SNQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNE 93


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 153/501 (30%), Positives = 268/501 (53%), Gaps = 35/501 (6%)

Query: 16  LGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSL 75
           LGW    +QLH  +++S    + +V++AL+  Y K  S  +A ++F  +   + VSW  L
Sbjct: 276 LGWG---KQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVL 332

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135
           I G +Q   + K++ LF ++    +  D ++  + ++ C     L LG  +HS  +K   
Sbjct: 333 IGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGH 392

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
            R +V++N LI +Y KCG +++A  VF  M ++DI+SW S+I A ++ GN+  A  F   
Sbjct: 393 NRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDG 452

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           +   + I++N ++    Q G  ED + + S+M                            
Sbjct: 453 MATRNAITWNAMLGAYIQHGAEEDGLKMYSAM---------------------------- 484

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
             +  KDV  D  T+ T+  G A + A   G  I    +K GL  ++ VA+A + MYSKC
Sbjct: 485 --LSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKC 542

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G++  A  +F  L  K++V+WNAMITGY+++G   +  + F+ + + +  +PD ++++ V
Sbjct: 543 GRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLS-KGAKPDYISYVAV 601

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L+ CSH+ +   +   YF+ MT+ +GI P +EH   M+ L+G+ G +  A+ +I ++   
Sbjct: 602 LSGCSHSGL-VQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMK 660

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
               VW ALLSA     + ++A ++A  V +L+      Y++L  +Y+  G  D ++ +R
Sbjct: 661 PTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVR 720

Query: 496 NFMRERGLRKEAGCSWIEVEN 516
             MR++G++K  G SW+EVEN
Sbjct: 721 KLMRDKGIKKNPGYSWMEVEN 741



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/546 (22%), Positives = 238/546 (43%), Gaps = 111/546 (20%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF-VEIPQPS 68
           LR+    G     + LH  ++  G  S VF+   L+  Y    +L+DA ++   +I +P+
Sbjct: 27  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 86

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEI------YADAYSFTSALAACGQLGSLQL 122
           V++ N +++GY + G    A  LF  + R ++       +D      +  +CG LG  +L
Sbjct: 87  VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCREL 146

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCG----------------------------- 153
              +     K+       +   L+DM+ +CG                             
Sbjct: 147 APQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAK 206

Query: 154 --SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF---LHR------------- 195
              ++ AI  F +M ++D++SWN +IAA +++G +  A G    +HR             
Sbjct: 207 LYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSS 266

Query: 196 -----------------------LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
                                  LP  D    + +I   A+ G  ++A  + +S+   NS
Sbjct: 267 LTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNS 326

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
            SW  ++ G +      +++ LF +M+++ + +D++  +T++SG      L  G  +HS 
Sbjct: 327 VSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSL 386

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
            +K G + +IVV+++L+ +Y+KCG ++ A+ +F S+  +++V+W +MIT Y++ G++ K 
Sbjct: 387 CLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKA 446

Query: 353 IELFEQLKT-------------------------------VRDLQPDSVTFLNVLAACSH 381
            E F+ + T                                +D+ PD VT++ +   C+ 
Sbjct: 447 REFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCA- 505

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
            DI  +K+ +     T   G+   V    + I +  + G +  AQ++  +L  G   V W
Sbjct: 506 -DIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLF-DLLNGKDVVSW 563

Query: 442 RALLSA 447
            A+++ 
Sbjct: 564 NAMITG 569



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 142/338 (42%), Gaps = 77/338 (22%)

Query: 101 YADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIG 160
           +A   +   AL +CG  G+L    A+H ++V   L   V + N L+  Y  CG++ DA  
Sbjct: 17  HAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARR 76

Query: 161 VF-GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFG---- 215
           +   ++ + ++I+ N ++   A+ G+L  A     R+P  D  S+N +++  ++      
Sbjct: 77  LLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWM 136

Query: 216 ---------------------------DIEDAIM--------------ILSSMPSPNSSS 234
                                      D+E A++              + S +  P    
Sbjct: 137 SCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFC 196

Query: 235 WNSILTGYV-------------------------------NRNRVPEALHLFGEMQSKDV 263
            NS+L GY                                   RV EAL L  EM  K V
Sbjct: 197 RNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGV 256

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
            +D  T+++ L+  A L +L WG  +H+ VI+        VASAL+++Y+KCG  + A  
Sbjct: 257 RLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKR 316

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
           +F SL  +N V+W  +I G  +    +K +ELF Q++ 
Sbjct: 317 VFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRA 354



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 113/232 (48%), Gaps = 5/232 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      L R  +D+G +    Q+  + +K+G + NV V+ A +  Y K   +++A K+
Sbjct: 492 PDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKL 551

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VVSWN++I+GY Q G  ++A   F ++       D  S+ + L+ C   G +
Sbjct: 552 FDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLV 611

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNSVIA 178
           Q G      + + + +  G+   +C++D+ G+ G + +A  +  +M  K     W ++++
Sbjct: 612 QEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLS 671

Query: 179 ASARNGN---LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           A   +GN    ELA   +  L +PD+ SY  +    +  G  +D+  +   M
Sbjct: 672 ACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLM 723


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 157/560 (28%), Positives = 287/560 (51%), Gaps = 42/560 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL A + +G      QLH + +K+G  +++ +  +L+  Y K   +  AHK 
Sbjct: 360 PDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKF 419

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F+     ++V WN ++  Y Q      +  +F +++   +  + +++ S L  C  LG+L
Sbjct: 420 FLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGAL 479

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IH+ ++K   +  V + + LIDMY K G +  A+ +   + + D++SW ++IA  
Sbjct: 480 YLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGY 539

Query: 181 ARNGNLELAFGFL----HRLPNPDTISY-------------------------------- 204
            ++     A        +R    D I +                                
Sbjct: 540 VQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADL 599

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+  A+ G I++A +    +   N+ SWNS+++G        EAL +F  M   
Sbjct: 600 SINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRT 659

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           +  ++ +T+ + +S  A L+ +  G  IHS V+K G D+   V+++L+ +Y+K G +  A
Sbjct: 660 EAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDA 719

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F  +  +N+++WNAMITGY+++G   + + LFE++K V  + P+ VTF+ VL+ACSH
Sbjct: 720 WREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMK-VCGIMPNHVTFVGVLSACSH 778

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  + + +YFESM K + + P  EH   ++ L+G+ G++ RA   I+E+   +  ++W
Sbjct: 779 IGLVKEGL-DYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIW 837

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LLSA     ++++   +A  +++LE +    YV++ N+Y     W      R  M++ 
Sbjct: 838 RTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDX 897

Query: 502 GLRKEAGCSWIEVENVAAHS 521
           G++KE G SWIEV+N A H+
Sbjct: 898 GVKKEPGRSWIEVKN-AVHA 916



 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 199/398 (50%), Gaps = 39/398 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  YVL  +L AS+ +      +QLHC ++K GF S  +V   L+  Y +   L  A ++
Sbjct: 259 PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERI 318

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     VS+NSLISG VQ G   +AL LF +++R  +  D  +  S L+AC  +G+L
Sbjct: 319 FSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGAL 378

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             GM +HS  +K  +   +++   L+D+Y KC  VE A   F     ++I+ WN ++ A 
Sbjct: 379 HKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAY 438

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEV----------------------------- 207
            +  NL  +F    ++      P+  +Y  +                             
Sbjct: 439 GQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNV 498

Query: 208 ------INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                 I+  A++G +  A+ IL  +P  +  SW +++ GYV  +   EAL LF EM+ +
Sbjct: 499 YVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYR 558

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D   F++ +S  AG+ AL  G  IH+     G  A + + +AL+ +Y++CG+++ A
Sbjct: 559 GIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEA 618

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
              F  +  KN ++WN++++G A++G   + +++F ++
Sbjct: 619 YLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRM 656



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/488 (24%), Positives = 229/488 (46%), Gaps = 46/488 (9%)

Query: 1   PNEYVLFHLLRA--SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           PN Y    +L+A    D+ ++ Y +Q+H      GF S+  V+  L+  Y K   +  A 
Sbjct: 157 PNGYTFAGVLKACVGGDIAFN-YVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAK 215

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           K+F  I    +V+W ++ISG  Q+G   +A+ LF ++  SEI+   Y  +S L+A  ++ 
Sbjct: 216 KVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQ 275

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
             +LG  +H  ++K+       + N L+ +Y +   +  A  +F  M  +D +S+NS+I+
Sbjct: 276 LFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLIS 335

Query: 179 ASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFG------------------- 215
              + G  + A     ++      PD I+   +++  A  G                   
Sbjct: 336 GLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSA 395

Query: 216 ----------------DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                           D+E A        + N   WN +L  Y   + + ++  +F +MQ
Sbjct: 396 DIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQ 455

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            + +  +++T+ ++L     L AL  G  IH+ VIK G   ++ V S L+DMY+K GQ+ 
Sbjct: 456 MEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLA 515

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           +A  + R L   ++V+W AMI GY ++   ++ ++LFE+++  R +Q D++ F + ++AC
Sbjct: 516 LALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEME-YRGIQFDNIGFASAISAC 574

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +           + +S    +G   ++ +  ++I L  + G +  A     ++G     +
Sbjct: 575 AGIRALRQGQQIHAQSYAAGFGADLSINN--ALISLYARCGRIQEAYLAFEKIG-DKNNI 631

Query: 440 VWRALLSA 447
            W +L+S 
Sbjct: 632 SWNSLVSG 639



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 218/464 (46%), Gaps = 44/464 (9%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           +LHC I KSGF     +  +L+  Y +      A K+F E    SV SWN +I  +V   
Sbjct: 79  RLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQK 138

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAAC-GQLGSLQLGMAIHSKIVKYSLERGVVIA 142
              +   LF  +    I  + Y+F   L AC G   +      +HS+   Y  +   ++A
Sbjct: 139 SNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVA 198

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE---LAFGFLHR---L 196
           N LID+Y K G +E A  VF  +  KDI++W ++I+  ++NG  E   L F  +H     
Sbjct: 199 NLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIF 258

Query: 197 PNPDTIS---------------------------YNE--VINGI----AQFGDIEDAIMI 223
           P P  +S                           ++E  V NG+    ++   +  A  I
Sbjct: 259 PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERI 318

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
            S+M S +  S+NS+++G V +     AL LF +MQ   +  D  T +++LS  A + AL
Sbjct: 319 FSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGAL 378

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             GM +HS  IK G+ A I++  +LLD+YSKC  VE A   F     +N+V WN M+  Y
Sbjct: 379 HKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAY 438

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
            +  +L+   E+F Q++ +  + P+  T+ ++L  C  T +    + E   +     G +
Sbjct: 439 GQLDNLSDSFEIFRQMQ-MEGMIPNQFTYPSILRTC--TSLGALYLGEQIHTHVIKTGFQ 495

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
             V  C  +I +  + G++  A R++R L      V W A+++ 
Sbjct: 496 LNVYVCSVLIDMYAKYGQLALALRILRRLPEDDV-VSWTAMIAG 538



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 161/344 (46%), Gaps = 46/344 (13%)

Query: 79  YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
           +++ GK  K + L   +E   + ++  ++   L  C   GSL   M +H +I K   +  
Sbjct: 34  HMEQGK-SKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGE 92

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA-SARNGNLELAFGFLHRL- 196
            ++ + L+D Y + G    A+ VF E  ++ + SWN +I    A+  N ++ F    R+ 
Sbjct: 93  PLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQV-FCLFRRML 151

Query: 197 -----PNPDT------------ISYNEV----------------------INGIAQFGDI 217
                PN  T            I++N V                      I+  ++ G I
Sbjct: 152 AEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYI 211

Query: 218 EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277
           E A  + + +   +  +W ++++G        EA+ LF +M + ++    Y  S++LS  
Sbjct: 212 ESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSAS 271

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
             +     G  +H  VIK G  +   V + L+ +YS+  ++  A+ +F ++  ++ V++N
Sbjct: 272 TKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYN 331

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACS 380
           ++I+G  + G   + +ELF +++  RD L+PD +T  ++L+AC+
Sbjct: 332 SLISGLVQQGFSDRALELFTKMQ--RDCLKPDCITVASLLSACA 373


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1724

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 150/529 (28%), Positives = 277/529 (52%), Gaps = 42/529 (7%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H +++ +GF S++ ++T L+ FY K+  +  A  +F  +P+ SVVSW +++SGY Q+G+
Sbjct: 52  IHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGR 111

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           + KA  LF ++    + A+ +++ SAL AC  L  L +G+ +   I K      + + + 
Sbjct: 112 FEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSA 171

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PD 200
           L+D + KCG +EDA  +FG M+++D++SWN++I   A  G  + +F     +      PD
Sbjct: 172 LVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPD 231

Query: 201 TISYNEV-----------------------------------INGIAQFGDIEDAIMILS 225
             +   V                                   IN  A+ G +  A  +  
Sbjct: 232 CYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRK 291

Query: 226 SMPSPNSSSWNSILTGYVNRNRVP-EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
            M   +  S  +++TGY +      +AL LF EM   ++ MD+    +ML+  A L++  
Sbjct: 292 GMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFA 351

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  IH+  +K      + + +AL+DMY+K G++E A   F  +  KN+++W ++I+GYA
Sbjct: 352 LGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYA 411

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           ++G     + L++++++ +  +P+ VTFL++L ACSHT +  +   E F +M   Y IKP
Sbjct: 412 KHGYGHMAVSLYKKMES-KGFKPNDVTFLSLLFACSHTGLTAEGC-ECFNNMVNKYNIKP 469

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
             EH   M+ L  ++G +  A  ++ ++       +W A+L AS     + + + +A+ +
Sbjct: 470 RAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNL 529

Query: 465 IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
             ++ ++   YV+L ++Y++ G WD A  +R  M ER  +K AG S+ +
Sbjct: 530 FNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQ 578



 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 148/532 (27%), Positives = 266/532 (50%), Gaps = 42/532 (7%)

Query: 25   LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
            +H  ++K G  SNV +   L+  Y +     DA  +F  + +  ++SWNS+++ YVQ GK
Sbjct: 1070 IHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGK 1129

Query: 85   YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
                L +  EL +     +  +F SALAAC     L     +H+ I+       +++ N 
Sbjct: 1130 CLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNA 1189

Query: 145  LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG------------- 191
            L+ MYGK G + +A  V   M   D ++WN++I   A N     A               
Sbjct: 1190 LVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPAN 1249

Query: 192  -----------------FLHRLP----------NPDTISYNEVINGIAQFGDIEDAIMIL 224
                               H +P            D    N +I   A+ GD+  +  I 
Sbjct: 1250 YITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIF 1309

Query: 225  SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
              + + +  +WN+++    +     EAL +FGEM++  V +D+++FS  L+  A L+ L 
Sbjct: 1310 DGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLE 1369

Query: 285  WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
             G  +H  VIK G ++ + V +A +DMY KCG++     M      ++ ++WN +I+ +A
Sbjct: 1370 EGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFA 1429

Query: 345  RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
            R+G   K  E F ++  +   +PD VTF+++L+AC+H  +  D+   Y++SMT+++G+ P
Sbjct: 1430 RHGCFQKARETFHEMLKLGP-KPDHVTFVSLLSACNHGGL-VDEGLAYYDSMTREFGVFP 1487

Query: 405  TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
             +EHC  +I L+G+ G +  A+  I+E+      + WR+LL+A     +L++AR +A  +
Sbjct: 1488 GIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHL 1547

Query: 465  IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++L+   D  YV+  N+  + G W+    +R  M    ++K+  CSW+++++
Sbjct: 1548 LELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKD 1599



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 215/423 (50%), Gaps = 41/423 (9%)

Query: 1    PNEYVLFHLLRASSDLGW-DTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
            PN +++  L+ A S  G+      Q+H +++K+G L +V+V TAL+ FY  I  + +A K
Sbjct: 843  PNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQK 902

Query: 60   MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
            +F E+P  +VVSW SL+ GY  SG   + LN++  + +  +  +  +F +  ++CG L  
Sbjct: 903  LFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLED 962

Query: 120  LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
              LG  +   I++Y  E  V +AN LI M+    SVE+A  VF  M + DIISWN++I+A
Sbjct: 963  QVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISA 1022

Query: 180  SARNGNLELA---FGFLHRLPNP----------------DTISYNEVINGI--------- 211
             A +G    +   F ++  L N                 D + +   I+G+         
Sbjct: 1023 YAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSN 1082

Query: 212  -----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                       ++ G  EDA ++  +M   +  SWNS++  YV   +  + L +  E+  
Sbjct: 1083 VCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQ 1142

Query: 261  KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
                M+  TF++ L+  +    L    ++H+ +I  G    ++V +AL+ MY K G +  
Sbjct: 1143 MGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMME 1202

Query: 321  ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            A  + +++ + + VTWNA+I G+A N +  + ++ ++ ++  + +  + +T ++VL ACS
Sbjct: 1203 AKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIRE-KGIPANYITMVSVLGACS 1261

Query: 381  HTD 383
              D
Sbjct: 1262 APD 1264



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 113/500 (22%), Positives = 235/500 (47%), Gaps = 45/500 (9%)

Query: 10   LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV 69
            L+  S++      + LH + +       +F +  L+  Y K  ++  A  +F E+   + 
Sbjct: 751  LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 810

Query: 70   VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL-QLGMAIHS 128
             SW++++SGYV+ G Y +A+ LF ++    +  + +   S + AC + G +   G  +H 
Sbjct: 811  ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHG 870

Query: 129  KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
             +VK  +   V +   L+  YG  G V +A  +F EM D +++SW S++   + +GN   
Sbjct: 871  FVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGE 930

Query: 189  AFGFLHRLPN--------------------------------------PDTISY-NEVIN 209
                  R+                                         D++S  N +I+
Sbjct: 931  VLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLIS 990

Query: 210  GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
              + F  +E+A  +   M   +  SWN++++ Y +     E+L  F  M+      +  T
Sbjct: 991  MFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTT 1050

Query: 270  FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
             S++LS  + +  L WG  IH  V+K GLD+++ + + LL +YS+ G+ E A+ +F+++ 
Sbjct: 1051 LSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMT 1110

Query: 330  RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389
             ++L++WN+M+  Y ++G     +++  +L  +  +  + VTF + LAACS+ +   +  
Sbjct: 1111 ERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVM-NHVTFASALAACSNPECLIE-- 1167

Query: 390  SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
            S+   ++    G    +    +++ + G+ G +  A+++++ +      V W AL+    
Sbjct: 1168 SKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDR-VTWNALIGGHA 1226

Query: 450  ACSDLDVARISAAEVIKLEG 469
               + + A + A ++I+ +G
Sbjct: 1227 ENEEPNEA-VKAYKLIREKG 1245



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 132/271 (48%), Gaps = 10/271 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y L  +LRAS++ G      Q+H  I + G+ S   V+  L+  Y K  SL  A  +
Sbjct: 230 PDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDL 289

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYR-KALNLFVELERSEIYADAYSFTSALAACGQLGS 119
              + +  + S  +LI+GY   G Y   AL+LF E+ +  I  D     S L  C  L S
Sbjct: 290 RKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLAS 349

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
             LG  IH+  +KY     V + N LIDMY K G +EDA   F EM +K++ISW S+I+ 
Sbjct: 350 FALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISG 409

Query: 180 SARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPS-----P 230
            A++G   +A     ++ +    P+ +++  ++   +  G   +     ++M +     P
Sbjct: 410 YAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKP 469

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
            +  ++ ++  +  +  + EA +L  ++  K
Sbjct: 470 RAEHYSCMVDLFARQGLLEEAYNLLCKIDIK 500



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 175/424 (41%), Gaps = 55/424 (12%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N++     LRA + L       Q+   I K  F+ N+FV +AL+ F+ K   + DA  +F
Sbjct: 130 NQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLF 189

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             + +  VVSWN++I GY   G    +  +F  + R  +  D Y+  S L A  + G L 
Sbjct: 190 GTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLI 249

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           +   IH  I +       ++   LI+ Y K GS+  A  +   M+ KD+ S  ++I   A
Sbjct: 250 IANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYA 309

Query: 182 RNG---------------------------------NL-ELAFGF------LHRLPNPDT 201
             G                                 NL   A G       L   P+ D 
Sbjct: 310 HEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDV 369

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+  A+ G+IEDA      M   N  SW S+++GY        A+ L+ +M+SK
Sbjct: 370 AMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESK 429

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
               ++ TF ++L   +       G    ++ V K  +       S ++D++++ G +E 
Sbjct: 430 GFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEE 489

Query: 321 ADSMFRSL-CRKNLVTWNAM-----ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           A ++   +  + N   W A+     I GY   G         E    + ++QP++     
Sbjct: 490 AYNLLCKIDIKHNASLWGAILGASSIYGYMSLGK--------EAASNLFNMQPENSVNYV 541

Query: 375 VLAA 378
           VLA+
Sbjct: 542 VLAS 545



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 115/230 (50%), Gaps = 11/230 (4%)

Query: 10   LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP-- 67
            L A+++L      QQLH  ++K GF S++ V+ A M  Y K   + D  KM   +PQP  
Sbjct: 1359 LAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKM---LPQPIN 1415

Query: 68   -SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI 126
             S +SWN LIS + + G ++KA   F E+ +     D  +F S L+AC   G +  G+A 
Sbjct: 1416 RSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAY 1475

Query: 127  HSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNG 184
            +  + + + +  G+    C+ID+ G+ G +  A G   EM +  + ++W S++AA   +G
Sbjct: 1476 YDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHG 1535

Query: 185  NLELAFG---FLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
            NLELA      L  L   D  +Y    N  A  G  ED   +   M S N
Sbjct: 1536 NLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNN 1585



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 85/405 (20%), Positives = 167/405 (41%), Gaps = 47/405 (11%)

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+  +AL L   L  +    D   +   L  C    + + G  IH+ ++       + + 
Sbjct: 12  GRLAEALKL---LSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLN 68

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL----HRLPN 198
             LI  Y K G V  A  VF  M ++ ++SW ++++  ++NG  E AF       H    
Sbjct: 69  TKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVK 128

Query: 199 PDTISYNEVIN----------GI-------------------------AQFGDIEDAIMI 223
            +  +Y   +           GI                         ++ G +EDA  +
Sbjct: 129 ANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYL 188

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
             +M   +  SWN+++ GY  +    ++  +F  M    +  D YT  ++L   A    L
Sbjct: 189 FGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGL 248

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
                IH  + + G  +  +V   L++ Y+K G +  A  + + + +K+L +  A+ITGY
Sbjct: 249 IIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGY 308

Query: 344 ARNGDLT-KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           A  G  +   ++LF+++  + ++  D V   ++L  C+  ++    +     +    Y  
Sbjct: 309 AHEGIYSVDALDLFKEMNQM-NIGMDDVILCSMLNICA--NLASFALGTQIHAFALKYQP 365

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
              V    ++I +  + GE+  A+R   E+   +  + W +L+S 
Sbjct: 366 SYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNV-ISWTSLISG 409



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 4/137 (2%)

Query: 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV 303
           N  R+ EAL L   + S    +D   +  +L       A   G LIH+ +I  G  + + 
Sbjct: 10  NLGRLAEALKL---LSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLH 66

Query: 304 VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363
           + + L+  Y K G V  A ++F  +  +++V+W AM++GY++NG   K   LF  ++   
Sbjct: 67  LNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHC- 125

Query: 364 DLQPDSVTFLNVLAACS 380
            ++ +  T+ + L AC+
Sbjct: 126 GVKANQFTYGSALRACT 142


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 165/542 (30%), Positives = 287/542 (52%), Gaps = 53/542 (9%)

Query: 23   QQLHCYILKSGFLSN-VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
            +++H +++++G   N V +   L+  Y K  ++ADA  +F  + +   VSWNSLISG  Q
Sbjct: 879  REVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQ 938

Query: 82   SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
            +     A   F+ + R+      ++  S L++C  LG + LG  IH   +K  L+  V +
Sbjct: 939  NECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSV 998

Query: 142  ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA---------SARNGNLELAFG- 191
            +N L+ +Y + G   + + VF  M + D +SWNSVI A          A    LE+  G 
Sbjct: 999  SNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGG 1058

Query: 192  -------FLHRLPNPDTISYNEVINGI-----------------------AQFGDIEDAI 221
                   F++ L    ++S +EV + I                        + G++ +  
Sbjct: 1059 WGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECE 1118

Query: 222  MILSSM-PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             I + M  + +  SWNS+++GY++   + +A+ L   M  K   +D +TF+T+LS  A +
Sbjct: 1119 KIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASV 1178

Query: 281  SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
            + L  GM +H+C I+  +++ +VV SAL+DMYSKCG+++ A   F  +  +N+ +WN+MI
Sbjct: 1179 ATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMI 1238

Query: 341  TGYARNGDLTKVIELFEQLKTVRDLQPDSVT-FLNVLAACSHTDIPFDKVSEYFESMTKD 399
            +GYAR+G   K ++LF ++  +    PD V   L VL+ACSH     ++  E+F+SM++ 
Sbjct: 1239 SGYARHGHGEKALKLFTRM-MLDGQPPDHVAPLLGVLSACSHVGF-VEEGFEHFKSMSEV 1296

Query: 400  YGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC-----SDL 454
            Y + P VEH   M+ L+G+ G++      I  +      ++WR +L   GAC      + 
Sbjct: 1297 YRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVL---GACCRANGRNT 1353

Query: 455  DVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
            ++ R +A  +++LE  +   YV+L N+Y S   W+  +  R  M+E  ++KEAGCSW+ +
Sbjct: 1354 ELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARXAMKEAAVKKEAGCSWVTM 1413

Query: 515  EN 516
            ++
Sbjct: 1414 KD 1415



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 198/411 (48%), Gaps = 55/411 (13%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           ++LH   +K GF+ N+F+S  L+  Y +I  L  A K+F E+   ++V+W  LISGY Q+
Sbjct: 564 RELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQN 623

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLG--SLQLGMAIHSKIVKYSLERGVV 140
           GK  +A   F ++ R+    + Y+F SAL AC + G    +LG+ IH  I K      VV
Sbjct: 624 GKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVV 683

Query: 141 IANCLIDMYGKC-GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP-- 197
           + N LI MYG C  S  DA  VF  +  ++ ISWNS+I+  +R G+   A+     +   
Sbjct: 684 VCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKE 743

Query: 198 ------NPDTISYNEVI-------------------------------------NGIAQF 214
                  P+  ++  +I                                     +G A+F
Sbjct: 744 GLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARF 803

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G  +DA  I   M   N  S N ++ G V + +   A  +F EM+   V ++  ++  +L
Sbjct: 804 GLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDL-VGINSDSYVVLL 862

Query: 275 SGIAGLSALTWGML----IHSCVIKQGL-DASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           S  +  S L  G      +H+ VI+ GL D  + + + L++MY+K G +  A S+F  + 
Sbjct: 863 SAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMV 922

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            K+ V+WN++I+G  +N       E F +++    + P + T ++ L++C+
Sbjct: 923 EKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSM-PSNFTLISTLSSCA 972



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 173/407 (42%), Gaps = 65/407 (15%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
            P+ + L   L + + LGW    +Q+HC  LK G  ++V VS AL+  Y +     +  K+
Sbjct: 959  PSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKV 1018

Query: 61   FVEIPQPSVVSWNSLISGYVQS-GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
            F  +P+   VSWNS+I     S     +A+  F+E+ R        +F + L+A   L  
Sbjct: 1019 FSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSL 1078

Query: 120  LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIA 178
             ++   IH+ ++KY L     I N L+  YGKCG + +   +F  M + +D +SWNS+I+
Sbjct: 1079 HEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMIS 1138

Query: 179  ASARN----GNLELAFGFLHRLPNPDTISYNEVINGIA---------------------- 212
                N      ++L +  + +    D+ ++  V++  A                      
Sbjct: 1139 GYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERGMEVHACGIRACMES 1198

Query: 213  -------------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                         + G I+ A      MP  N  SWNS+++GY       +AL LF  M 
Sbjct: 1199 DVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMM 1258

Query: 260  SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG------------LDASIVVASA 307
                P D       L G+  LSA +     H   +++G            L   +   S 
Sbjct: 1259 LDGQPPDHV---APLLGV--LSACS-----HVGFVEEGFEHFKSMSEVYRLSPRVEHFSC 1308

Query: 308  LLDMYSKCGQV-EIADSMFRSLCRKNLVTWNAMITGYAR-NGDLTKV 352
            ++D+  + G++ E+ D +     + N++ W  ++    R NG  T++
Sbjct: 1309 MVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTEL 1355



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           TF ++++   G         +H   IK G   ++ +++ L+++Y + G +  A  +F  +
Sbjct: 546 TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEM 605

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR-DLQPDSVTFLNVLAACSHT 382
             +NLVTW  +I+GY +NG   +    F  +  VR    P+   F + L AC  +
Sbjct: 606 SNRNLVTWACLISGYTQNGKPDEACARFRDM--VRAGFIPNHYAFGSALRACQES 658


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 153/501 (30%), Positives = 268/501 (53%), Gaps = 35/501 (6%)

Query: 16  LGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSL 75
           LGW    +QLH  +++S    + +V++AL+  Y K  S  +A ++F  +   + VSW  L
Sbjct: 286 LGWG---KQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVL 342

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135
           I G +Q   + K++ LF ++    +  D ++  + ++ C     L LG  +HS  +K   
Sbjct: 343 IGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGH 402

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
            R +V++N LI +Y KCG +++A  VF  M ++DI+SW S+I A ++ GN+  A  F   
Sbjct: 403 NRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDG 462

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           +   + I++N ++    Q G  ED + + S+M                            
Sbjct: 463 MATRNAITWNAMLGAYIQHGAEEDGLKMYSAM---------------------------- 494

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
             +  KDV  D  T+ T+  G A + A   G  I    +K GL  ++ VA+A + MYSKC
Sbjct: 495 --LSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKC 552

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G++  A  +F  L  K++V+WNAMITGY+++G   +  + F+ + + +  +PD ++++ V
Sbjct: 553 GRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLS-KGAKPDYISYVAV 611

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L+ CSH+ +   +   YF+ MT+ +GI P +EH   M+ L+G+ G +  A+ +I ++   
Sbjct: 612 LSGCSHSGL-VQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMK 670

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
               VW ALLSA     + ++A ++A  V +L+      Y++L  +Y+  G  D ++ +R
Sbjct: 671 PTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVR 730

Query: 496 NFMRERGLRKEAGCSWIEVEN 516
             MR++G++K  G SW+EVEN
Sbjct: 731 KLMRDKGIKKNPGYSWMEVEN 751



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 155/325 (47%), Gaps = 32/325 (9%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV     +M  Y K  SL+DA ++F  +P+  V SWN+L+SGY Q+ ++   L  FV + 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 97  RS-EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
           RS +   +A++F   + +CG LG  +L   +     K+       +   L+DM+ +CG V
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYV 189

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFG 215
           + A  +F +                               +  P     N ++ G A+  
Sbjct: 190 DFASRLFSQ-------------------------------IERPTIFCRNSMLAGYAKLY 218

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275
            I+ AI     M   +  SWN ++       RV EAL L  EM  K V +D  T+++ L+
Sbjct: 219 GIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLT 278

Query: 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335
             A L +L WG  +H+ VI+        VASAL+++Y+KCG  + A  +F SL  +N V+
Sbjct: 279 ACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVS 338

Query: 336 WNAMITGYARNGDLTKVIELFEQLK 360
           W  +I G  +    +K +ELF Q++
Sbjct: 339 WTVLIGGSLQYECFSKSVELFNQMR 363



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 113/232 (48%), Gaps = 5/232 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      L R  +D+G +    Q+  + +K+G + NV V+ A +  Y K   +++A K+
Sbjct: 502 PDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKL 561

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VVSWN++I+GY Q G  ++A   F ++       D  S+ + L+ C   G +
Sbjct: 562 FDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLV 621

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNSVIA 178
           Q G      + + + +  G+   +C++D+ G+ G + +A  +  +M  K     W ++++
Sbjct: 622 QEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLS 681

Query: 179 ASARNGN---LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           A   +GN    ELA   +  L +PD+ SY  +    +  G  +D+  +   M
Sbjct: 682 ACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLM 733



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 119/279 (42%), Gaps = 38/279 (13%)

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF-GE 164
           +   AL +CG  G+L    A+H ++V   L   V + N L+  Y  CG++ DA  +   +
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRAD 65

Query: 165 MIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMIL 224
           + + ++I+ N ++   A+ G+L  A     R+P  D  S                     
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVAS--------------------- 104

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLSAL 283
                     WN++++GY    R  + L  F  M +S D   + +TF  ++     L   
Sbjct: 105 ----------WNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCR 154

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
                +     K        V +AL+DM+ +CG V+ A  +F  + R  +   N+M+ GY
Sbjct: 155 ELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGY 214

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           A+   +   IE FE +      + D V++  ++AA S +
Sbjct: 215 AKLYGIDHAIEYFEDMA-----ERDVVSWNMMIAALSQS 248


>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 163/544 (29%), Positives = 276/544 (50%), Gaps = 52/544 (9%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q++H +I+K+G   + F+ T L+  Y K  ++  A K+F E+P+ +VVSW +L++GYV  
Sbjct: 89  QKIHAHIVKTGAHKDAFLMTFLVNVYAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHD 148

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            K   A+ +F E+  +  Y   Y+  +AL+A   L S +LG  IH   +KY +E    I 
Sbjct: 149 SKPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHSKELGKQIHGYSIKYRIEFDASIG 208

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------ 196
           N L  +Y KCGS+E A+  F  + DK++ISW +VI+A   NG       F   +      
Sbjct: 209 NSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVE 268

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMIL-------SSMPSPNS----------------- 232
           PN  T++    +  + Q  DI   I  L       S++P  NS                 
Sbjct: 269 PNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKL 328

Query: 233 ---------SSWNSILTGYVNRNRVP-----------EALHLFGEMQSKDVPMDEYTFST 272
                     +WN+++ G+                  EAL +F ++    +  D +TFS+
Sbjct: 329 FDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFSS 388

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332
           +LS  + L AL  G  +H+  IK G  + +VV +AL++MY+KCG +E A   F  +  + 
Sbjct: 389 VLSVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVEMSIRT 448

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           L++W +MITGYA+NG   + + LFE ++ +  ++P+ +TF+ VL+ACSH  +  D+  +Y
Sbjct: 449 LISWTSMITGYAQNGQPQQALLLFEDMR-LAGVRPNKITFVGVLSACSHAGM-VDEALDY 506

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
           F+ M  +Y I P ++H   +I +  + G +  A   I+E+       +W  L++   +  
Sbjct: 507 FQMMKNEYKITPVMDHYACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIAGCRSQG 566

Query: 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
            L++   +A +++ L+      Y +L N+Y S G W   S +R  M+E  L +    SWI
Sbjct: 567 KLELGFYAAEQLLNLKPKDTETYNLLLNMYLSAGKWKEVSRVRKMMKEEKLGRLKDWSWI 626

Query: 513 EVEN 516
            +++
Sbjct: 627 SIKD 630



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 117/432 (27%), Positives = 188/432 (43%), Gaps = 63/432 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  Y L   L ASSDL      +Q+H Y +K     +  +  +L   Y K  SL  A K 
Sbjct: 168 PTNYTLGTALSASSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKA 227

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I   +V+SW ++IS +  +G+    L  FVE+    +  + ++ TSAL+ C  + SL
Sbjct: 228 FRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSL 287

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +G  IHS  +K   E  + I N ++ +Y KCG + +A  +F EM    +++WN++IA  
Sbjct: 288 DIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGH 347

Query: 181 ARNGNL---ELA-----------FGFLHRLP-NPDTISY--------------------- 204
           AR  +    +LA           F  L+R    PD  ++                     
Sbjct: 348 ARMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHA 407

Query: 205 --------NEVINGIA------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE 250
                   ++V+ G A      + G IE A      M      SW S++TGY    +  +
Sbjct: 408 QTIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMITGYAQNGQPQQ 467

Query: 251 ALHLFGEMQSKDVPMDEYTFSTMLSGI--AGL--SALTW-GMLIHSCVIKQGLDASIVVA 305
           AL LF +M+   V  ++ TF  +LS    AG+   AL +  M+ +   I   +D      
Sbjct: 468 ALLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITPVMDH----Y 523

Query: 306 SALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
           + L+DM+ + G+++ A    + +    N   W+ +I G    G L       EQL    +
Sbjct: 524 ACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGKLELGFYAAEQL---LN 580

Query: 365 LQPDSVTFLNVL 376
           L+P      N+L
Sbjct: 581 LKPKDTETYNLL 592


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 160/555 (28%), Positives = 275/555 (49%), Gaps = 53/555 (9%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65
           L  L  A +DL      + +H  +   G       +TAL   Y K     DA ++F  +P
Sbjct: 231 LLKLCAARADLATG---RAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMP 287

Query: 66  QPSVVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGSLQLGM 124
               V+WN+L++GY ++G    A+ + V ++  +    DA +  S L AC    +L    
Sbjct: 288 ARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACR 347

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
            +H+  V+   +  V ++  ++D+Y KCG+V+ A  VF  M D++ +SWN++I   A NG
Sbjct: 348 EVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENG 407

Query: 185 NLELAFGFLHRLPNPDT----ISYNEVINGIAQFGDIED--------------------- 219
           +   A     R+         +S    ++   + G +++                     
Sbjct: 408 DATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMN 467

Query: 220 --------------AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
                         A  +   +      SWN+++ G        +A+ LF  MQ ++V  
Sbjct: 468 ALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKP 527

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           D +T  +++  +A +S       IH   I+  LD  + V +AL+DMY+KCG+V IA S+F
Sbjct: 528 DSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLF 587

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
            S   ++++TWNAMI GY  +G     +ELFE++K+   + P+  TFL+VL+ACSH  + 
Sbjct: 588 NSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKV-PNETTFLSVLSACSHAGL- 645

Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA----QRMIRELGFGSYGVVW 441
            D+  EYF SM +DYG++P +EH  +M+ L+G+ G++  A    Q+M  E G   YG   
Sbjct: 646 VDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYG--- 702

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            A+L A     ++++A  SA  + +LE +    +V+L N+Y +   W   + +R  M ++
Sbjct: 703 -AMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKK 761

Query: 502 GLRKEAGCSWIEVEN 516
           GL+K  G S ++++N
Sbjct: 762 GLQKTPGWSIVQLKN 776



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 147/321 (45%), Gaps = 41/321 (12%)

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
           +FTS L  C     L  G A+H+++    L    + A  L +MY KC    DA  VF  M
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRL-----PNPDTISYNEVINGIA-------- 212
             +D ++WN+++A  ARNG  E A G + R+       PD ++   V+   A        
Sbjct: 287 PARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGAC 346

Query: 213 ---------------------------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245
                                      + G ++ A  +   M   NS SWN+++ GY   
Sbjct: 347 REVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAEN 406

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
               EAL LF  M  + V + + +    L     L  L  G  +H  +++ GL++++ V 
Sbjct: 407 GDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVM 466

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           +AL+ MY KC + ++A  +F  L  K  V+WNAMI G  +NG     + LF +++ + ++
Sbjct: 467 NALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQ-LENV 525

Query: 366 QPDSVTFLNVLAACSHTDIPF 386
           +PDS T ++++ A +    P 
Sbjct: 526 KPDSFTLVSIIPALADISDPL 546



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 195/418 (46%), Gaps = 44/418 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L A +D      C+++H + ++ GF   V VSTA++  Y K  ++  A K+
Sbjct: 325 PDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKV 384

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   + VSWN++I GY ++G   +AL LF  +    +     S  +AL ACG+LG L
Sbjct: 385 FDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFL 444

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H  +V+  LE  V + N LI MY KC   + A  VF E+  K  +SWN++I   
Sbjct: 445 DEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGC 504

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGD---------------IEDAI 221
            +NG+ E A     R+      PD+ +   +I  +A   D               ++  +
Sbjct: 505 TQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDV 564

Query: 222 MILSSMPSP--------------NSS------SWNSILTGYVNRNRVPEALHLFGEMQSK 261
            +L+++                 NS+      +WN+++ GY +      A+ LF EM+S 
Sbjct: 565 YVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSS 624

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEI 320
               +E TF ++LS  +    +  G    S + +  GL+  +     ++D+  + G++  
Sbjct: 625 GKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHE 684

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ-LKTVRDLQPDSVTFLNVLA 377
           A S  + +  +  ++    + G  +   L K +EL E+  + + +L+P+   +  +LA
Sbjct: 685 AWSFIQKMPMEPGISVYGAMLGACK---LHKNVELAEESAQRIFELEPEEGVYHVLLA 739



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 10/163 (6%)

Query: 227 MPSPNSSSWNSI-------LTGYVNRNRVPEALHLFGEMQ--SKDVPMDEYTFSTMLSGI 277
           +PSP +++ ++        L    +R+ +  AL  F  M   S   P+   TF+++L   
Sbjct: 177 LPSPITAATHAAPDDHHARLRAAASRSDLRGALAAFAAMSPASGSGPVLR-TFTSLLKLC 235

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
           A  + L  G  +H+ +  +GL    + A+AL +MY+KC +   A  +F  +  ++ V WN
Sbjct: 236 AARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWN 295

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A++ GYARNG     + +  +++     +PD+VT ++VL AC+
Sbjct: 296 ALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACA 338


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 162/549 (29%), Positives = 282/549 (51%), Gaps = 45/549 (8%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N Y +  +L A ++        QLH +I K+GF  +  VS+AL+  Y KI  +  + ++F
Sbjct: 348 NNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVF 407

Query: 62  VEIPQ-PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            E+    ++  W  +IS + QSG   +A+ LF  + +  +  D +  +S L+    + SL
Sbjct: 408 REMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSI---IDSL 464

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IH  I+K  L   + + + L  MY KCGS+E++  VF +M DKD +SW S+I   
Sbjct: 465 SLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGF 524

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNE------------------------------ 206
           + + + E A      +      PD ++                                 
Sbjct: 525 SEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVGKEV 584

Query: 207 -----VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                ++N  ++ G I  A  +   +P  +  S +S+++GY     + +AL LF E++  
Sbjct: 585 LVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMA 644

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           D+ +D +T S+++  +A L++L  G  +H+CV K GL+A + V S+L+ MYSKCG ++  
Sbjct: 645 DLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDEC 704

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  + + +L++W AMI  YA++G   + +++++ ++     +PDSVTF+ VL+ACSH
Sbjct: 705 HKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRK-EGTKPDSVTFVGVLSACSH 763

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  +  S +  SM K+YGI+P   H   M+ L+G+ G +  A+R I  +      ++W
Sbjct: 764 NGMVEEGYS-HLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFINNMPIEPDALLW 822

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
             LL+A     D+++ R++A  VI+LE      YV L N+    G W+    +R+ M   
Sbjct: 823 GILLAACKVHGDIELGRLAAKRVIELEPCEAGAYVTLSNICADMGWWEDVMKIRSLMEGT 882

Query: 502 GLRKEAGCS 510
           G++KE G S
Sbjct: 883 GVKKEPGWS 891



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 202/394 (51%), Gaps = 42/394 (10%)

Query: 25  LHCYILKSGFL-SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           LH + LK+  L SN F++ +LMG+Y K NS+  A ++F + P P+V+SWN LISG  Q+ 
Sbjct: 67  LHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNF 126

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
            +  +   F ++  S    + +++ S L+AC  LGS   G  ++S  +K        +  
Sbjct: 127 SFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRA 186

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPNP 199
            +ID++ K  S EDA+ VF +++ ++++ WN++I+ + +N      L+L      R   P
Sbjct: 187 GMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMP 246

Query: 200 DTISYNEVINGIA-----QFG------------------------------DIEDAIMIL 224
           ++ +++ ++   A     +FG                              D++ A+   
Sbjct: 247 NSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEF 306

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             MP  N  SW +I++G+V ++    A H F EM+     ++ YT +++L+       + 
Sbjct: 307 LRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIK 366

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGY 343
             + +HS + K G      V+SAL++MYSK G V++++ +FR +   KNL  W  MI+ +
Sbjct: 367 EAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAF 426

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           A++G   + +ELF+++     L+PD     +VL+
Sbjct: 427 AQSGSTGRAVELFQRMLQ-EGLRPDKFCSSSVLS 459



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 206/420 (49%), Gaps = 44/420 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++    +L A + LG   Y + ++   LK+GF SN +V   ++  + K+ S  DA ++
Sbjct: 145 PNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRV 204

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++   +VV WN++ISG V++ +   AL+LF ++       ++++F+S L AC  L  L
Sbjct: 205 FQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEEL 264

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +   ++K      V +   +ID+Y KC  ++ A+  F  M  ++++SW ++I+  
Sbjct: 265 EFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGF 324

Query: 181 ARNGNLELAFGFLHRL-------------------PNP--------------------DT 201
            +  +   AF F   +                     P                    D+
Sbjct: 325 VQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDS 384

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPS-PNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
              + +IN  ++ G ++ +  +   M S  N + W  +++ +        A+ LF  M  
Sbjct: 385 NVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQ 444

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           + +  D++  S++LS I  LS    G LIH  ++K GL   I V S+L  MYSKCG +E 
Sbjct: 445 EGLRPDKFCSSSVLSIIDSLSL---GRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEE 501

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           + ++F  +  K+ V+W +MITG++ +    + ++LF ++  + +++PD +T    L ACS
Sbjct: 502 SYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREM-LLEEIRPDQMTLTAALTACS 560



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 154/315 (48%), Gaps = 17/315 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  L   L A S L      +++H Y L++     V V  AL+  Y K  ++  A ++
Sbjct: 547 PDQMTLTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRV 606

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +PQ    S +SL+SGY Q+G    AL LF E+  ++++ D+++ +S + A   L SL
Sbjct: 607 FDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSL 666

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +G  +H+ + K  L   V + + L+ MY KCGS+++   VF ++   D+ISW ++I + 
Sbjct: 667 DIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSY 726

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
           A++G    A      +      PD++++  V++  +  G +E+    L+SM         
Sbjct: 727 AQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKE-----Y 781

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
            I  GY +   + + L   G ++  +  ++               AL WG+L+ +C +  
Sbjct: 782 GIEPGYYHYACMVDLLGRSGRLKEAERFINNMPIEP--------DALLWGILLAACKVHG 833

Query: 297 GLDASIVVASALLDM 311
            ++   + A  ++++
Sbjct: 834 DIELGRLAAKRVIEL 848



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 95/181 (52%), Gaps = 1/181 (0%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           +T   N ++    +   +  A+ +    P PN  SWN +++G        ++   F +M+
Sbjct: 80  NTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFSFEDSWRNFCKMR 139

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
                 +++T+ ++LS    L +  +G L++S  +K G  ++  V + ++D+++K    E
Sbjct: 140 FSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFE 199

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F+ +  +N+V WNA+I+G  +N +    ++LF Q+   R   P+S TF ++L AC
Sbjct: 200 DALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQM-CCRFFMPNSFTFSSILTAC 258

Query: 380 S 380
           +
Sbjct: 259 A 259


>gi|347954468|gb|AEP33734.1| chlororespiratory reduction 21, partial [Lepidium virginicum]
          Length = 788

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 150/525 (28%), Positives = 287/525 (54%), Gaps = 13/525 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +   L AS+++      +Q H   + +G   +  + T+++ FY K+  +  A  +
Sbjct: 232 PTRVTVSTCLSASANIRGIEEGKQSHAIAIVNGLEMDNILGTSILNFYCKVGLVEYAEMI 291

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  VV+WN LISGYVQ G    A+++   +    +  D+ + ++ ++A  +  +L
Sbjct: 292 FDRMIEKDVVTWNLLISGYVQQGLVDDAIHMCKLMRLENLRYDSVTLSTLMSAAARTHNL 351

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +    +++  E  +V+A+  +DMY KCGS+ DA  VF   ++KD+I WN+++AA 
Sbjct: 352 KLGKEVQCYCIRHCFESEIVLASTAVDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAY 411

Query: 181 ARNG----NLELAFGF-LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PN 231
           A +G     L L +   L  +P P+ I++N +I  + + G +++A  +   M S    PN
Sbjct: 412 ADSGLSGEALRLFYDMQLESVP-PNMITWNSIILSLLRNGQVDEAKEMFLQMQSSGIFPN 470

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SW +++ G V      EA++   +MQ   +  + ++ +  LS  A L++L +G  IH 
Sbjct: 471 LISWTTMMNGLVQNGCSEEAINFLRKMQESGLRPNSFSITVALSACAHLASLNFGRSIHG 530

Query: 292 CVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
            +I+     +S+   ++L+DMY+KCG +  A+  F S     L  +NAMI+ YA  G++ 
Sbjct: 531 YIIRNLQHSSSVSFVTSLVDMYAKCGDINQAEKAFGSKLYDELPLYNAMISAYALYGNMK 590

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + I L+ +L+ +  ++PDS+TF ++L+ACSH       ++  F  M   +G+KP +EH  
Sbjct: 591 EAIALYRRLEDMA-IKPDSITFTSLLSACSHAGDIVQAIN-IFTEMVSKHGMKPCLEHYG 648

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            M+ L+   GE  +A  +I+E+ +     + ++L++++      ++    + ++++ E +
Sbjct: 649 LMVDLLASSGETNKALELIKEMPYKPDARMIQSLVASNNKQHKTELVDYLSKQLLESEPE 708

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           +   YV + N +   G+WD    MR  M+ +GL+K+ GCSWI+++
Sbjct: 709 NSGNYVTISNAFAIEGSWDEVVKMREMMKAKGLKKKPGCSWIQIK 753



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/515 (26%), Positives = 238/515 (46%), Gaps = 49/515 (9%)

Query: 23  QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           QQ+H  ILK+G  +  N ++ T L+ FY K +++  A  +F  +   +V SW ++I    
Sbjct: 50  QQIHARILKNGDFYARNQYIETKLLIFYAKCDAIEVAQNLFSRLRVRNVFSWAAIIGLKC 109

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + G    AL  FVE+  + +  D Y   +   ACG L     G  +H  +VK  L   V 
Sbjct: 110 RIGLCEGALTGFVEMIENGVLPDNYVVPNVCKACGALQWTWFGRGVHGYLVKAGLHDCVF 169

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
           +A+ L DMYGKCG + DA  VF ++ ++++++WN+++    +NG  E A   L  +    
Sbjct: 170 VASSLADMYGKCGVLNDARKVFDKIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEG 229

Query: 197 --PNPDTISY---------------------------------NEVINGIAQFGDIEDAI 221
             P   T+S                                    ++N   + G +E A 
Sbjct: 230 IEPTRVTVSTCLSASANIRGIEEGKQSHAIAIVNGLEMDNILGTSILNFYCKVGLVEYAE 289

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           MI   M   +  +WN +++GYV +  V +A+H+   M+ +++  D  T ST++S  A   
Sbjct: 290 MIFDRMIEKDVVTWNLLISGYVQQGLVDDAIHMCKLMRLENLRYDSVTLSTLMSAAARTH 349

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  +    I+   ++ IV+AS  +DMY+KCG +  A  +F S   K+L+ WN ++ 
Sbjct: 350 NLKLGKEVQCYCIRHCFESEIVLASTAVDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLA 409

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            YA +G   + + LF  ++ +  + P+ +T+ +++ +        D+  E F  M +  G
Sbjct: 410 AYADSGLSGEALRLFYDMQ-LESVPPNMITWNSIILSLLRNG-QVDEAKEMFLQM-QSSG 466

Query: 402 IKPTVEHCCSMIRLMGQKG---EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           I P +    +M+  + Q G   E     R ++E G           LSA    + L+  R
Sbjct: 467 IFPNLISWTTMMNGLVQNGCSEEAINFLRKMQESGLRPNSFSITVALSACAHLASLNFGR 526

Query: 459 ISAAEVIK-LEGDSDYVYVM-LCNLYTSHGNWDVA 491
                +I+ L+  S   +V  L ++Y   G+ + A
Sbjct: 527 SIHGYIIRNLQHSSSVSFVTSLVDMYAKCGDINQA 561



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 191/424 (45%), Gaps = 79/424 (18%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ YV+ ++ +A   L W  + + +H Y++K+G    VFV+++L   Y K   L DA K+
Sbjct: 131 PDNYVVPNVCKACGALQWTWFGRGVHGYLVKAGLHDCVFVASSLADMYGKCGVLNDARKV 190

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +IP+ +VV+WN+L+ GYVQ+G   +A+ L  ++ +  I     + ++ L+A   +  +
Sbjct: 191 FDKIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANIRGI 250

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN------ 174
           + G   H+  +   LE   ++   +++ Y K G VE A  +F  MI+KD+++WN      
Sbjct: 251 EEGKQSHAIAIVNGLEMDNILGTSILNFYCKVGLVEYAEMIFDRMIEKDVVTWNLLISGY 310

Query: 175 -----------------------------SVIAASARNGNLELAFGF----LHRLPNPDT 201
                                        ++++A+AR  NL+L        +      + 
Sbjct: 311 VQQGLVDDAIHMCKLMRLENLRYDSVTLSTLMSAAARTHNLKLGKEVQCYCIRHCFESEI 370

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           +  +  ++  A+ G I DA  +  S    +   WN++L  Y +     EAL LF +MQ +
Sbjct: 371 VLASTAVDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYADSGLSGEALRLFYDMQLE 430

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            VP +                +TW  +I S +                    + GQV+ A
Sbjct: 431 SVPPN---------------MITWNSIILSLL--------------------RNGQVDEA 455

Query: 322 DSMFRSLCRK----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
             MF  +       NL++W  M+ G  +NG   + I    +++    L+P+S +    L+
Sbjct: 456 KEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAINFLRKMQE-SGLRPNSFSITVALS 514

Query: 378 ACSH 381
           AC+H
Sbjct: 515 ACAH 518



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 151/348 (43%), Gaps = 42/348 (12%)

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS- 134
           +S   + G+ R+AL L  E+E   +      +   L  C     L  G  IH++I+K   
Sbjct: 2   VSSLCKHGEIREALRLVKEMEFRNVRIGPEIYGEILQGCVYERDLCTGQQIHARILKNGD 61

Query: 135 -LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF-GF 192
              R   I   L+  Y KC ++E A  +F  +  +++ SW ++I    R G  E A  GF
Sbjct: 62  FYARNQYIETKLLIFYAKCDAIEVAQNLFSRLRVRNVFSWAAIIGLKCRIGLCEGALTGF 121

Query: 193 LHRLPN---PDTISYNEVINGIAQF----------------------------------- 214
           +  + N   PD      V                                          
Sbjct: 122 VEMIENGVLPDNYVVPNVCKACGALQWTWFGRGVHGYLVKAGLHDCVFVASSLADMYGKC 181

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G + DA  +   +P  N  +WN+++ GYV      EA+ L  +M+ + +     T ST L
Sbjct: 182 GVLNDARKVFDKIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCL 241

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
           S  A +  +  G   H+  I  GL+   ++ +++L+ Y K G VE A+ +F  +  K++V
Sbjct: 242 SASANIRGIEEGKQSHAIAIVNGLEMDNILGTSILNFYCKVGLVEYAEMIFDRMIEKDVV 301

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           TWN +I+GY + G +   I +  +L  + +L+ DSVT   +++A + T
Sbjct: 302 TWNLLISGYVQQGLVDDAIHMC-KLMRLENLRYDSVTLSTLMSAAART 348


>gi|125587880|gb|EAZ28544.1| hypothetical protein OsJ_12524 [Oryza sativa Japonica Group]
          Length = 559

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 155/509 (30%), Positives = 262/509 (51%), Gaps = 36/509 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E     LL+ S D    +  +Q+H +++ +G  S V++  +L+  Y     +  A  M
Sbjct: 10  PDEQTFLSLLK-SVDAERRSVGKQVHAHVVVTGLHSRVYLRNSLIKMYLDAGDVEAAEAM 68

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F   P    VS N ++SGYV+ G   KAL  F  +    I  D Y+  + LA CG+L   
Sbjct: 69  FRCAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIGVDQYTAVALLACCGRLKKA 128

Query: 121 QLGMAIHSKIVKY--SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            LG ++H  +V+     +RG++++N L+DMY KCG +  A+ VF E  ++D ISW     
Sbjct: 129 VLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMRVFDEAGERDGISW----- 183

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
                                     N ++ G A  G ++ A       P+ +  SWN++
Sbjct: 184 --------------------------NTMVAGFANAGLLDLASKYFGEAPARDIISWNAL 217

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           L GY         + LF +M +  V  D+ T  T++S +AG   L     +H  V+K+  
Sbjct: 218 LAGYARYEEFSATMILFHDMLASSVIPDKVTAVTLISAVAGKGTLNSARSVHGWVVKEHG 277

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
                +ASAL+DMY KCG +++A ++F     K++  W AMI+G A +G     ++LF +
Sbjct: 278 TQDSFLASALVDMYCKCGSIKLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWK 337

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           ++     +P+ VT + VL+ACSH  + FD+  + F+++ + + I+P VEH   M+ L+ +
Sbjct: 338 MQA-EGTEPNGVTLVAVLSACSHAGL-FDEGCKIFDTLKQRFNIEPGVEHFGCMVDLLAR 395

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G +  A  + R +       +W ++LSAS AC + +VA I++ E++ LE   +  YV+L
Sbjct: 396 SGRLSDAVDLARRMPMKPSRSIWGSILSASSACQNTEVAEIASKELLCLEPAEEGGYVLL 455

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEA 507
            N+Y + G W+ ++ +R  M  +G+RK A
Sbjct: 456 SNMYAAEGQWNYSNEVRENMERKGVRKSA 484


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 165/562 (29%), Positives = 276/562 (49%), Gaps = 80/562 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDT-YCQQLHCYILKSGF---------LSNVFVSTALMGFYRK 50
           P+++    +L AS+ + +D   C Q+H  ++K G          L +V+V  A       
Sbjct: 145 PDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSS 204

Query: 51  INSLADAHKMFVEIP--------------------------------QPSVVSWNSLISG 78
            + +A A K+F E+P                                QP + +WN++ISG
Sbjct: 205 SSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGI-AWNAMISG 263

Query: 79  YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL--E 136
           Y+  G +  AL LF ++    +  D  ++TS ++AC   G   LG  +H+ I+K  L  +
Sbjct: 264 YLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPD 323

Query: 137 RGVV--IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH 194
           R  +  + N LI +Y K G V+ A  +F EM                             
Sbjct: 324 RDFLLSVGNTLITLYWKYGKVDGARKIFYEM----------------------------- 354

Query: 195 RLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
             P  D I++N +++G    G +E+A    + MP  N  +W  +++G        +AL L
Sbjct: 355 --PVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKL 412

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F +M+      ++Y F+  ++  + L AL  G  +H+ ++  G D+++ V +A++ MY++
Sbjct: 413 FNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYAR 472

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG VE A +MF ++   + V+WN+MI    ++G   K IEL+EQ+     + PD  TFL 
Sbjct: 473 CGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLK-EGILPDRRTFLT 531

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           VL+ACSH  +  ++ + YF SM ++YGI P  +H   MI L  + G+   A+ +I  + F
Sbjct: 532 VLSACSHAGL-VEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPF 590

Query: 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494
            +   +W ALL+      ++D+   +A ++ KL    D  YV+L N+Y S G W+  +  
Sbjct: 591 EARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVART 650

Query: 495 RNFMRERGLRKEAGCSWIEVEN 516
           R  MR+RG++KE  CSW EVEN
Sbjct: 651 RKLMRDRGVKKEPACSWTEVEN 672



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 177/436 (40%), Gaps = 110/436 (25%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVS----------- 71
           + +H +++ SGF     +   L+  Y K +    A K+F EIPQP V++           
Sbjct: 33  RTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSAL 92

Query: 72  ----------------------WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
                                 +N++I+GY        A+ LF  +  +    D ++F S
Sbjct: 93  GNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFAS 152

Query: 110 ALAA----------CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159
            L+A          CGQ+         H  +VK+ +E    + N L+ +Y KC S     
Sbjct: 153 VLSASTLIFYDERQCGQM---------HGTVVKFGIEIFPAVLNALLSVYVKCASSPLVS 203

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIED 219
                         +S + ASAR             +P  +   +  +I G  + GD+  
Sbjct: 204 --------------SSSLMASARK--------LFDEMPKRNEFIWTTLITGYVRNGDLTG 241

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
           A  IL +M      +WN++++GY++     +AL LF +M+   V +DE T+++++S  A 
Sbjct: 242 AREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACAD 301

Query: 280 LSALTWGMLIHSCVIKQGLDA-----------------------------------SIVV 304
                 G  +H+ ++K  L+                                     I+ 
Sbjct: 302 GGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIIT 361

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
            + LL  Y   G++E A S F  +  KNL+TW  MI+G A+NG   + ++LF Q+K +  
Sbjct: 362 WNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMK-LDG 420

Query: 365 LQPDSVTFLNVLAACS 380
            +P+   F   + ACS
Sbjct: 421 YEPNDYAFAGAITACS 436



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 115/274 (41%), Gaps = 45/274 (16%)

Query: 99  EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
            + A+ Y     L     L S  L   +H  ++    +    I N LID+Y K      A
Sbjct: 8   RVLANRYFAQLNLCCPQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYA 67

Query: 159 IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP--NPDTISYNEVINGIAQFGD 216
             +F E+   D+I+  ++I A +  GNL++A    +  P    DT+ YN +I        
Sbjct: 68  RKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMI-------- 119

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
                                  TGY + N    A+ LF  M+  +   D++TF+++LS 
Sbjct: 120 -----------------------TGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSA 156

Query: 277 --IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI---------ADSMF 325
             +        G + H  V+K G++    V +ALL +Y KC    +         A  +F
Sbjct: 157 STLIFYDERQCGQM-HGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLF 215

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
             + ++N   W  +ITGY RNGDLT   E+ + +
Sbjct: 216 DEMPKRNEFIWTTLITGYVRNGDLTGAREILDTM 249



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 123/282 (43%), Gaps = 16/282 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+Y     + A S LG     +QLH  I+  G  S + V  A++  Y +   +  A  M
Sbjct: 423 PNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTM 482

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F+ +P    VSWNS+I+   Q G   KA+ L+ ++ +  I  D  +F + L+AC   G +
Sbjct: 483 FLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLV 542

Query: 121 QLG-MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G    +S +  Y +  G      +ID++ + G   DA  V   M  +     W +++A
Sbjct: 543 EEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLA 602

Query: 179 ASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDA-----IMILSSMPS 229
               +GN++L      +L    P  D  +Y  + N  A  G   D      +M    +  
Sbjct: 603 GCRTHGNMDLGIEAAEKLFKLIPQHDG-TYVLLSNMYASLGRWNDVARTRKLMRDRGVKK 661

Query: 230 PNSSSW----NSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
             + SW    N +    V+    PE L ++  ++  ++ M +
Sbjct: 662 EPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKK 703


>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 163/557 (29%), Positives = 283/557 (50%), Gaps = 67/557 (12%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFY---------RKI----------------------NS 53
           +HC +LKSG  S   V +AL+ FY         R++                      N 
Sbjct: 120 IHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNV 179

Query: 54  LADAHKMFVEIPQPSVVSWNSLISGYVQSGK-YRKALNLFVELERS-EIYADAYSFTSAL 111
           + DA  +FV++P+  VV+W +LISG+ ++G    KAL +F  + RS E   + ++F   +
Sbjct: 180 MDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVV 239

Query: 112 AACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII 171
            ACG+LG L +G  +H  ++K  LE    I   L++ Y +C +++DA+ V   +++  + 
Sbjct: 240 RACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLN 299

Query: 172 SWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP--- 228
           + NS+I      G +E A    + +   + +SYN +I G A  G ++D+  +   MP   
Sbjct: 300 ALNSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRT 359

Query: 229 -----------------------------SPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                                          +  +WNS+++GY++  +  EAL L+  M 
Sbjct: 360 IFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMH 419

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
              +   + TFS +    + L +L  G L+H+ +IK   ++++ V ++L+DMYSKCG + 
Sbjct: 420 RLSIQQTQSTFSALFHACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIM 479

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A + F S+   N+  W A+I G+A +G  ++ I LF+++   + L P+  TF+ VL+AC
Sbjct: 480 EAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDRM-IEQGLAPNGATFVGVLSAC 538

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           S   +  ++  + F SM + Y + PT+EH   ++ L+G+ G +  A+  I+++   + GV
Sbjct: 539 SRAGL-VNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGV 597

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           VW ALLSA     DL+V    A ++   +      YV+L N+Y   G W    ++R  +R
Sbjct: 598 VWGALLSACWFWMDLEVGERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILR 657

Query: 500 ERGLRKEAGCSWIEVEN 516
              ++K+ GCSWIE+ N
Sbjct: 658 GFKVKKDPGCSWIELNN 674



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 117/514 (22%), Positives = 213/514 (41%), Gaps = 73/514 (14%)

Query: 9   LLRASSDLGWD-TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP 67
           L++AS    W     ++   Y      LS +  +   +  Y K + L  A ++F ++PQ 
Sbjct: 2   LIKASISKAWKHQRLKEFKLYTAHQSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQR 61

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
           +VVSWN++IS Y + G++ +AL L   + RS +     +F+S L+ C +L  L+ G  IH
Sbjct: 62  TVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIH 121

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
             ++K   E   ++ + L+  Y  C  + +A  VF  ++ ++ + W+ ++        ++
Sbjct: 122 CLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMD 181

Query: 188 LAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
            A     ++P  D +++  +I+G ++ GD                               
Sbjct: 182 DALSVFVKMPRRDVVAWTTLISGFSKNGD------------------------------G 211

Query: 248 VPEALHLFG-EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
             +AL +F   M+S +   +E+TF  ++     L  L+ G  +H  ++K GL+    +  
Sbjct: 212 CGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGG 271

Query: 307 ALLDMYSKC-------------------------------GQVEIADSMFRSLCRKNLVT 335
           AL++ Y +C                               G++E A+ +F  +   N V+
Sbjct: 272 ALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPVS 331

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF-LNVLAACSHTDIPFDKVSEYFE 394
           +N MI GYA  G +     LFE++       P    F  N + +    +   DK  E FE
Sbjct: 332 YNLMIKGYAVGGQMDDSKRLFEKM-------PCRTIFSSNTMISVYSRNGEIDKALELFE 384

Query: 395 SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDL 454
             TK+     T     S     GQ  E  +    +  L        + AL  A      L
Sbjct: 385 E-TKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSL 443

Query: 455 DVARISAAEVIKLEGDSD-YVYVMLCNLYTSHGN 487
              ++  A +IK   +S+ YV   L ++Y+  G+
Sbjct: 444 HQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGS 477



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 7/221 (3%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           L  A S LG     Q LH +++K+ F SNV+V T+L+  Y K  S+ +A   FV I  P+
Sbjct: 433 LFHACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPN 492

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI-H 127
           V +W +LI+G+   G   +A++LF  +    +  +  +F   L+AC + G +  GM I H
Sbjct: 493 VAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFH 552

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNL 186
           S    YS+   +    C++D+ G+ G + +A     +M ++ D + W ++++A     +L
Sbjct: 553 SMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDL 612

Query: 187 ELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMI 223
           E+      ++    P P + SY  + N  A  G   + +M+
Sbjct: 613 EVGERVAEKMFSFDPKPIS-SYVILSNIYAGLGRWREKMMV 652


>gi|15228117|ref|NP_181268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216848|sp|Q9ZUT5.1|PP191_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37310
 gi|4056485|gb|AAC98051.1| hypothetical protein [Arabidopsis thaliana]
 gi|110741249|dbj|BAF02175.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254288|gb|AEC09382.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 149/508 (29%), Positives = 259/508 (50%), Gaps = 34/508 (6%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV 69
           L    D    +  +Q+H ++++ GF S+VFV   ++ +Y K +++  A K+F E+ +  V
Sbjct: 139 LSGCDDFWLGSLARQVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDV 198

Query: 70  VSWNSLISGYVQSGKYRKALNLF-VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           VSWNS+ISGY QSG +     ++   L  S+   +  +  S   ACGQ   L  G+ +H 
Sbjct: 199 VSWNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHK 258

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
           K+++  ++  + + N +I  Y KCG                               +L+ 
Sbjct: 259 KMIENHIQMDLSLCNAVIGFYAKCG-------------------------------SLDY 287

Query: 189 AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV 248
           A      +   D+++Y  +I+G    G +++A+ + S M S   S+WN++++G +  N  
Sbjct: 288 ARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHH 347

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
            E ++ F EM       +  T S++L  +   S L  G  IH+  I+ G D +I V +++
Sbjct: 348 EEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSI 407

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           +D Y+K G +  A  +F +   ++L+ W A+IT YA +GD      LF+Q++ +   +PD
Sbjct: 408 IDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSLFDQMQCL-GTKPD 466

Query: 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM 428
            VT   VL+A +H+    D     F+SM   Y I+P VEH   M+ ++ + G++  A   
Sbjct: 467 DVTLTAVLSAFAHSGDS-DMAQHIFDSMLTKYDIEPGVEHYACMVSVLSRAGKLSDAMEF 525

Query: 429 IRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW 488
           I ++       VW ALL+ +    DL++AR +   + ++E ++   Y ++ NLYT  G W
Sbjct: 526 ISKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEMEPENTGNYTIMANLYTQAGRW 585

Query: 489 DVASVMRNFMRERGLRKEAGCSWIEVEN 516
           + A ++RN M+  GL+K  G SWIE E 
Sbjct: 586 EEAEMVRNKMKRIGLKKIPGTSWIETEK 613



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 124/264 (46%), Gaps = 28/264 (10%)

Query: 194 HRLP---------------NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
           HRLP                PD    +++I+   +      A+ +   +   N+ S+N++
Sbjct: 35  HRLPLHVLQLHARIVVFSIKPDNFLASKLISFYTRQDRFRQALHVFDEITVRNAFSYNAL 94

Query: 239 LTGYVNRNRVPEALHLF-----GEMQSKDVPM-DEYTFSTMLSGIAGLSALTWGML---I 289
           L  Y +R    +A  LF         S D    D  + S +L  ++G      G L   +
Sbjct: 95  LIAYTSREMYFDAFSLFLSWIGSSCYSSDAARPDSISISCVLKALSGCDDFWLGSLARQV 154

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H  VI+ G D+ + V + ++  Y+KC  +E A  +F  +  +++V+WN+MI+GY+++G  
Sbjct: 155 HGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSGSF 214

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIPFDKVSEYFESMTKDYGIKPTVEH 408
               ++++ +    D +P+ VT ++V  AC   +D+ F    E  + M +++ I+  +  
Sbjct: 215 EDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGL--EVHKKMIENH-IQMDLSL 271

Query: 409 CCSMIRLMGQKGEVWRAQRMIREL 432
           C ++I    + G +  A+ +  E+
Sbjct: 272 CNAVIGFYAKCGSLDYARALFDEM 295



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 147/354 (41%), Gaps = 64/354 (18%)

Query: 1   PNEYVLFHLLRA---SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
           PN   +  + +A   SSDL    +  ++H  ++++    ++ +  A++GFY K  SL  A
Sbjct: 232 PNGVTVISVFQACGQSSDL---IFGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYA 288

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE--------------------- 96
             +F E+ +   V++ ++ISGY+  G  ++A+ LF E+E                     
Sbjct: 289 RALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHE 348

Query: 97  ----------RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
                     R     +  + +S L +     +L+ G  IH+  ++   +  + +   +I
Sbjct: 349 EVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSII 408

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTI 202
           D Y K G +  A  VF    D+ +I+W ++I A A +G+ + A     ++      PD +
Sbjct: 409 DNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDV 468

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPS-----PNSSSWNSILTGYVNRNRVPEALHLFGE 257
           +   V++  A  GD + A  I  SM +     P    +  +++      ++ +A+    +
Sbjct: 469 TLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVLSRAGKLSDAMEFISK 528

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           M     P+D               A  WG L++   +   L+ +      L +M
Sbjct: 529 M-----PIDPI-------------AKVWGALLNGASVLGDLEIARFACDRLFEM 564


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 151/504 (29%), Positives = 275/504 (54%), Gaps = 10/504 (1%)

Query: 20  TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLAD----AHKMFVEIPQPSVVSWNSL 75
           T  +Q+H  +LK G  S+ F++  L+  +    SL+D    A ++F   P P V   N+L
Sbjct: 19  TTFKQIHANVLKLGLESDPFIAGKLL--HHCAISLSDSLDYACRLFRYTPNPDVFMHNTL 76

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYA-DAYSFTSALAACGQLGSLQLGMAIHSKIVKYS 134
           I G  +S + + +L  F+E+ R+     D++SF   + A   L S+++G+ +H + + + 
Sbjct: 77  IRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALVHG 136

Query: 135 LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH 194
           L+  + +   LI MYG+CG V  A  VF EM + + I+WN+++ A  R G+++       
Sbjct: 137 LDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFD 196

Query: 195 RLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
            +P  + +S+N ++ G  + G++E A  +   MP  +  SW++++ G+ +     EA   
Sbjct: 197 LMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSF 256

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F E+Q K +  +E + + +LS  A   AL +G ++H  + K GL   + V +ALLD YSK
Sbjct: 257 FRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSK 316

Query: 315 CGQVEIADSMF-RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           CG V +A  +F R +  +N+V+W +M+   A +G   + I +F +++    ++PD + F+
Sbjct: 317 CGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEE-SGIRPDEIAFI 375

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
           ++L ACSH  +  ++  EYF+ M   Y I+P++EH   M+ L G+ G++ +A   + ++ 
Sbjct: 376 SLLYACSHAGL-VEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMP 434

Query: 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
                ++WR LL A     D+ +A      + +L+ ++   +V+L N Y   G W  A+ 
Sbjct: 435 IPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAAS 494

Query: 494 MRNFMRERGLRKEAGCSWIEVENV 517
           +R  M E+ + K  G S IEV+ +
Sbjct: 495 VRRSMTEQRITKTPGWSMIEVDKI 518



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  L  +L A +  G   + + LH +I KSG    V V+ AL+  Y K  ++  A  +
Sbjct: 267 PNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLV 326

Query: 61  FVEI-PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F  I  + ++VSW S+++     G   +A+ +F ++E S I  D  +F S L AC   G 
Sbjct: 327 FERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGL 386

Query: 120 LQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
           ++ G     K+   Y++E  +    C++D+YG+ G ++ A     +M I    I W +++
Sbjct: 387 VEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLL 446

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVI---NGIAQFGDIEDAIMILSSM 227
            A + +G+++LA     RL   D  + ++ +   N  A  G  +DA  +  SM
Sbjct: 447 GACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSM 499


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 152/556 (27%), Positives = 282/556 (50%), Gaps = 44/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +L+    L        +H  I+  GF S+ FVSTAL+  Y K+  + D++K+
Sbjct: 169 PDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKV 228

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + + +VVSWN++I+G+  +  Y  A +LF+ +    +  DA +F     A G L  +
Sbjct: 229 FNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDV 288

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGE--MIDKDIISWNSVIA 178
                +    ++  ++   ++   LIDM  KCGS+++A  +F    +  +    WN++I+
Sbjct: 289 NKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMIS 348

Query: 179 ASARNGNLELAFGFLHRLPNPDT------------------------------------I 202
              R+G  E A     ++   D                                     +
Sbjct: 349 GYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEV 408

Query: 203 SY----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
           +Y    N V N  A+ G +ED   + + M   +  SW S++T Y   +   +A+ +F  M
Sbjct: 409 NYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNM 468

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           +++ +  +++TFS++L   A L  L +G  +H  + K GLD    + SAL+DMY+KCG +
Sbjct: 469 RAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCL 528

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
             A  +F  +   + V+W A+I G+A++G +   ++LF ++  +  ++P++VTFL VL A
Sbjct: 529 GDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQL-GVEPNAVTFLCVLFA 587

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH  +  + + +YF+ M K YG+ P +EH   ++ L+ + G +  A   I  +      
Sbjct: 588 CSHGGLVEEGL-QYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNE 646

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
           +VW+ LL A     ++++  ++A +++  + ++   YV+L N Y   G++     +R+ M
Sbjct: 647 MVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLM 706

Query: 499 RERGLRKEAGCSWIEV 514
           +E+G++KE GCSWI V
Sbjct: 707 KEQGVKKEPGCSWISV 722



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 205/420 (48%), Gaps = 45/420 (10%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCYILKSGFLSN--VFVSTALMGFYRKINSLADAHKMFVE 63
           L  LLR   D  +    + +H ++LKS F ++  + +   +   Y K + +  A ++F +
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
           + Q +  SW  LI+G  ++G +      F E++   I+ D ++++  L  C  L S++LG
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
             +H++IV         ++  L++MY K   +ED+  VF  M + +++SWN++I     N
Sbjct: 191 NMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSN 250

Query: 184 GNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDA---------------IMIL 224
                AF    R+      PD  ++  V   I    D+  A                ++ 
Sbjct: 251 DLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVG 310

Query: 225 SSMPSPNS----------------------SSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
           +++   NS                      + WN++++GY+      +AL LF +M   D
Sbjct: 311 TALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQND 370

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV-VASALLDMYSKCGQVEIA 321
           + +D YT+ ++ + IA L  L+ G  +H+  IK GL+ + V +++A+ + Y+KCG +E  
Sbjct: 371 IYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDV 430

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  ++L++W +++T Y++  +  K IE+F  ++    + P+  TF +VL +C++
Sbjct: 431 RKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRA-EGIAPNQFTFSSVLVSCAN 489


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 164/553 (29%), Positives = 278/553 (50%), Gaps = 40/553 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N Y     L+   D  +      +H  +LKS   ++V+V+ AL+  Y K   + DA ++F
Sbjct: 247 NTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVF 306

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +     VSWN+L+SG VQ+  Y  ALN F +++ S    D  S  + +AA G+ G+L 
Sbjct: 307 ESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLL 366

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  +H+  ++  L+  + I N L+DMY KC  V+     F  M +KD+ISW ++IA  A
Sbjct: 367 KGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYA 426

Query: 182 RN-------------------------GNLELA-------------FGFLHRLPNPDTIS 203
           +N                         G++  A              G++ +    D + 
Sbjct: 427 QNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIML 486

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
            N ++N   + G I+ A     S+ S +  SW S++T  V+     EAL LF  ++  ++
Sbjct: 487 QNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNI 546

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             D     + LS  A LS+L  G  IH  +I++G      +AS+L+DMY+ CG VE +  
Sbjct: 547 QPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRK 606

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           MF S+ +++L+ W +MI     +G   K I LF+++ T +++ PD +TFL +L ACSH+ 
Sbjct: 607 MFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKM-TDQNVIPDHITFLALLYACSHSG 665

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
           +  +    +FE M   Y ++P  EH   M+ L+ +   +  A   +R +       +W A
Sbjct: 666 LMVEG-KRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCA 724

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           LL A    S+ ++  ++A E+++ + ++   Y ++ N++ + G W+    +R  M+  GL
Sbjct: 725 LLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGL 784

Query: 504 RKEAGCSWIEVEN 516
           +K  GCSWIEV+N
Sbjct: 785 KKNPGCSWIEVDN 797



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 127/399 (31%), Positives = 199/399 (49%), Gaps = 44/399 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           QQLH  +LKS    + F++T L+  Y K  SL DA K+F E+ + ++ SWN+L+  +V S
Sbjct: 66  QQLHALLLKSHL--SAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSS 123

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           GKY +A+ L+ ++    +  DA +F S L ACG LG  +LG  IH   VK      V + 
Sbjct: 124 GKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVC 183

Query: 143 NCLIDMYGKCGSVEDAIGVF-GEMIDK-DIISWNSVIAASARNGNLELAFGFLHRLPN-- 198
           N LI MYGKCG +  A  +F G M++K D +SWNS+I+A    GN   A     R+    
Sbjct: 184 NALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVG 243

Query: 199 -------------------------------------PDTISYNEVINGIAQFGDIEDAI 221
                                                 D    N +I   A+ G +EDA 
Sbjct: 244 VASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAG 303

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +  SM   +  SWN++L+G V      +AL+ F +MQ+     D+ +   +++      
Sbjct: 304 RVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSG 363

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  +H+  I+ GLD+++ + + L+DMY+KC  V+     F  +  K+L++W  +I 
Sbjct: 364 NLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIA 423

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           GYA+N    + I LF +++ V+ +  D +   +VL ACS
Sbjct: 424 GYAQNEFHLEAINLFRKVQ-VKGMDVDPMMIGSVLRACS 461



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 201/411 (48%), Gaps = 43/411 (10%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF--VEIPQ 66
           +L+A   LG      ++H   +K G+   VFV  AL+  Y K   L  A  +F  + + +
Sbjct: 151 VLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEK 210

Query: 67  PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI 126
              VSWNS+IS +V  G   +AL+LF  ++   + ++ Y+F +AL        ++LGM I
Sbjct: 211 EDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGI 270

Query: 127 HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNL 186
           H  ++K +    V +AN LI MY KCG +EDA  VF  M+ +D +SWN++++   +N   
Sbjct: 271 HGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELY 330

Query: 187 ELAFGFLHRLPN----PDTISYNEVI---------------------NGIAQFGDIEDAI 221
             A  +   + N    PD +S   +I                     NG+     I + +
Sbjct: 331 SDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTL 390

Query: 222 M--------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
           +                  M   +  SW +I+ GY       EA++LF ++Q K + +D 
Sbjct: 391 VDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDP 450

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
               ++L   +GL +  +   IH  V K+ L A I++ +A++++Y + G ++ A   F S
Sbjct: 451 MMIGSVLRACSGLKSRNFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHIDYARRAFES 509

Query: 328 LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           +  K++V+W +MIT    NG   + +ELF  LK   ++QPDS+  ++ L+A
Sbjct: 510 IRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQT-NIQPDSIAIISALSA 559



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 93/204 (45%), Gaps = 4/204 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +   L A+++L      +++H ++++ GF     ++++L+  Y    ++ ++ KM
Sbjct: 548 PDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKM 607

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + Q  ++ W S+I+     G   KA+ LF ++    +  D  +F + L AC   G +
Sbjct: 608 FHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLM 667

Query: 121 QLGMAIHSKIVK--YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
             G     +I+K  Y LE       C++D+  +  S+E+A      M I      W +++
Sbjct: 668 VEGKRFF-EIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALL 726

Query: 178 AASARNGNLELAFGFLHRLPNPDT 201
            A   + N EL       L   DT
Sbjct: 727 GACHIHSNKELGELAAKELLQSDT 750


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 152/480 (31%), Positives = 259/480 (53%), Gaps = 10/480 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV     ++  +     + +A  +F E+P  ++VSWN++I  YV+  +   A  LF+E+ 
Sbjct: 232 NVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMP 291

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
                 D+ S+T+ +    ++G L     I + ++ Y   + +     +I+ Y + G ++
Sbjct: 292 EK----DSVSWTAMINGYVRVGKLLQAREILN-LMPY---KNIAAQTAMINGYLQSGRMD 343

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           +A  +F ++  +D + WNS+I   A  G  + A      +   D +S+N +I   AQ G 
Sbjct: 344 EANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQ 403

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           ++ A+ + + M   N  SWNS++TGYV      EAL+ F  M+ +    D+ T    L  
Sbjct: 404 MDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRA 463

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            A L+AL  G+ +H   IK G    + V +A+L MY+K G+V  A+++F  +  K++V+W
Sbjct: 464 SANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSW 523

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           N++I GYA NG   + +ELFE +  +R + PD VTF  +L+AC+H     D+    F+SM
Sbjct: 524 NSLIAGYALNGCGKEAVELFEVM-PLRGIIPDEVTFTGLLSACNHGGF-VDQGLNLFKSM 581

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
           T+ Y IKP  EH   +I L+G+ G +  A  +++ +   S   +W ALL A     +L++
Sbjct: 582 TETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLEL 641

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           A+ SA  ++ LE  +   YV+L N++   G WD+   +R  M+E    K+ GCSWIE++N
Sbjct: 642 AKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAEKQPGCSWIEIDN 701



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 197/385 (51%), Gaps = 36/385 (9%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           N+    +++  Y K   +A+A ++F  +PQ ++VSWNS+I+GY+ +     A  LF  + 
Sbjct: 45  NIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMF 104

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           + +IY    S+T  +    ++G L+    + + +     ++  V  N LI  Y K     
Sbjct: 105 KRDIY----SWTLMITCYTRIGELEKARELFNLLPD---KQDTVCRNALIAGYAKKRLFR 157

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           +A  +F EM+ K+++SWNS+++   +NG ++L   F   +   + +S+N +++G    GD
Sbjct: 158 EAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGD 217

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP-----MDEYTFS 271
           ++ A M    +P+PN  SW ++L+G+ +  R+ EA +LF EM +K++      +  Y   
Sbjct: 218 LDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRE 277

Query: 272 TMLSGIAGL-------SALTWGMLIHSCV-IKQGLDA----------SIVVASALLDMYS 313
             +     L        +++W  +I+  V + + L A          +I   +A+++ Y 
Sbjct: 278 NQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYL 337

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           + G+++ A+ +F  +  ++ V WN+MITGYA  G   + + LF+++     +  D V++ 
Sbjct: 338 QSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEM-----VCKDMVSWN 392

Query: 374 NVLAACSHTDIPFDKVSEYFESMTK 398
            ++AA +      DK  E F  M +
Sbjct: 393 TMIAAYAQAG-QMDKALEMFNEMQE 416



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 127/253 (50%), Gaps = 14/253 (5%)

Query: 131 VKYSLERG--VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
           VK   E+G  V   N  I   G+ G +E+A+ VF +M +++I+++NS+I+A A+NG +  
Sbjct: 5   VKSIGEKGSYVFTQNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIAN 64

Query: 189 AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV 248
           A      +P  + +S+N +I G      +EDA  +   M   +  SW  ++T Y     +
Sbjct: 65  ARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGEL 124

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
            +A  LF  +  K    D    + +++G A              +  + L  ++V  +++
Sbjct: 125 EKARELFNLLPDKQ---DTVCRNALIAGYAKKRLFREA----KKLFDEMLVKNVVSWNSI 177

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           L  Y+K G++++    F ++  +N+V+WN M+ GY   GDL      F+++ T     P+
Sbjct: 178 LSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPT-----PN 232

Query: 369 SVTFLNVLAACSH 381
            V+++ +L+  +H
Sbjct: 233 VVSWVTMLSGFAH 245



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  +   LRAS++L       QLH   +K+GF +++FV  A++  Y K   + +A  +
Sbjct: 452 PDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENV 511

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EI    VVSWNSLI+GY  +G  ++A+ LF  +    I  D  +FT  L+AC   G +
Sbjct: 512 FAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFV 571

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS---WNSV 176
             G+ +   + + YS++       C+I++ G+ G +E+A+ +   M  K + S   W ++
Sbjct: 572 DQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGM--KTVSSAKIWGAL 629

Query: 177 IAASARNGNLELA 189
           + A   + NLELA
Sbjct: 630 LWACRIHHNLELA 642


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 163/554 (29%), Positives = 279/554 (50%), Gaps = 44/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +LR    +      +++H ++++ G+  ++ V  AL+  Y K   +  A  +
Sbjct: 194 PDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLL 253

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+  ++SWN++ISGY ++G   + L LF  +    +  D  + TS ++AC  LG  
Sbjct: 254 FDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDR 313

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IH+ ++       + + N L  MY   GS  +A  +F  M  KDI+SW ++I+  
Sbjct: 314 RLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGY 373

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGD-------------------- 216
             N   + A      +      PD I+   V++  A  GD                    
Sbjct: 374 EYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYV 433

Query: 217 ---------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                          I+ A+ I  ++P  N  SW SI+ G    NR  EAL    +M+  
Sbjct: 434 IVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMT 493

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
             P +  T +  L+  A + AL  G  IH+ V++ G+     + +ALLDMY +CG++  A
Sbjct: 494 LQP-NAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTA 552

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            S F S  +K++ +WN ++TGY+  G  + V+ELF+++   R ++PD +TF+++L  CS 
Sbjct: 553 WSQFNSQ-KKDVTSWNILLTGYSERGQGSMVVELFDRMVKSR-VRPDEITFISLLCGCSK 610

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           + +    +  YF  M +DYG+ P ++H   ++ L+G+ GE+  A + I+++       VW
Sbjct: 611 SQMVRQGLM-YFSKM-EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVW 668

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL+A      +D+  +SA  + +L+  S   Y++LCNLY   G W   + +R  M+E 
Sbjct: 669 GALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKEN 728

Query: 502 GLRKEAGCSWIEVE 515
           GL  +AGCSW+EV+
Sbjct: 729 GLTVDAGCSWVEVK 742



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 176/372 (47%), Gaps = 44/372 (11%)

Query: 38  VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE-LE 96
           V +  A +  + +  +L DA  +F ++ + ++ SWN L+ GY + G + +A+ L+   L 
Sbjct: 129 VELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLW 188

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
              +  D Y+F   L  CG +  L  G  +H  +V+Y  E  + + N LI MY KCG V+
Sbjct: 189 VGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVK 248

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLPNPDTISYNEVINGIA 212
            A  +F  M  +DIISWN++I+    NG     LEL F       +PD ++   VI+   
Sbjct: 249 SARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACE 308

Query: 213 QFGDI-----------------------------------EDAIMILSSMPSPNSSSWNS 237
             GD                                     +A  + S M   +  SW +
Sbjct: 309 LLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTT 368

Query: 238 ILTGYVNRNRVPE-ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           +++GY   N +P+ A+  +  M    V  DE T + +LS  A L  L  G+ +H   IK 
Sbjct: 369 MISGY-EYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKA 427

Query: 297 GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
            L + ++VA+ L++MYSKC  ++ A  +F ++ RKN+++W ++I G   N    + +   
Sbjct: 428 RLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFL 487

Query: 357 EQLKTVRDLQPD 368
            Q+K    LQP+
Sbjct: 488 RQMKMT--LQPN 497



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 151/345 (43%), Gaps = 41/345 (11%)

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135
           + G   +GK  +A+ L   ++   +  D   F + +  C    + + G  ++S  +    
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMS 125

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
             GV + N  + M+ + G++ DA  VFG+M ++++ SWN ++   A+ G  + A    HR
Sbjct: 126 SLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHR 185

Query: 196 L-----PNPDTISY-----------------------------------NEVINGIAQFG 215
           +       PD  ++                                   N +I    + G
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCG 245

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275
           D++ A ++   MP  +  SWN++++GY       E L LF  M+   V  D  T ++++S
Sbjct: 246 DVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVIS 305

Query: 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335
               L     G  IH+ VI  G    I V ++L  MY   G    A+ +F  + RK++V+
Sbjct: 306 ACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVS 365

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           W  MI+GY  N    K I+ +  +     ++PD +T   VL+AC+
Sbjct: 366 WTTMISGYEYNFLPDKAIDTYRMMDQ-DSVKPDEITVAAVLSACA 409



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 6/218 (2%)

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           L G     ++ EA+ L   MQ   V +DE  F  ++       A   G  ++S  +    
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMS 125

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
              + + +A L M+ + G +  A  +F  +  +NL +WN ++ GYA+ G   + + L+ +
Sbjct: 126 SLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHR 185

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           +  V  ++PD  TF  VL  C    IP     +        YG +  ++   ++I +  +
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCG--GIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVK 243

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSA---SGACSD 453
            G+V  A+ +   +      + W A++S    +G C +
Sbjct: 244 CGDVKSARLLFDRMPRRDI-ISWNAMISGYFENGMCHE 280


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 167/553 (30%), Positives = 275/553 (49%), Gaps = 41/553 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N Y    +L+  ++L      ++LH  +LKSG   N+  + AL+  Y K   +  A ++F
Sbjct: 265 NSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCN-ALLVMYTKCGRVDSALRVF 323

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            EI +   +SWNS++S YVQ+G Y +A+    E+ R     D     S  +A G LG L 
Sbjct: 324 REIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLL 383

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  +H+  +K  L+    + N L+DMY KC  +E +  VF  M  KD ISW ++I   A
Sbjct: 384 NGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYA 443

Query: 182 RNGN--------------------------LELAFGF--------LH----RLPNPDTIS 203
           ++                            LE   G         LH    R    D + 
Sbjct: 444 QSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVV 503

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
            N +I+   + G++  ++ +  ++   +  +W S++  Y N   + EAL LF EMQS DV
Sbjct: 504 KNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDV 563

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             D     ++L  I GLS+L  G  +H  +I++       + S+L+DMYS CG +  A  
Sbjct: 564 QPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALK 623

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F ++  K++V W AMI     +G   + I+LF+++     + PD V+FL +L ACSH+ 
Sbjct: 624 VFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQT-GVTPDHVSFLALLYACSHSK 682

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
           +  ++   Y + M   Y ++P  EH   ++ L+G+ G+   A   I+ +      VVW +
Sbjct: 683 L-VNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCS 741

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           LL A     + ++A ++A  +++LE D+   YV++ N++   G W+ A  +R  + ERGL
Sbjct: 742 LLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGL 801

Query: 504 RKEAGCSWIEVEN 516
           RK+  CSWIE+ N
Sbjct: 802 RKDPACSWIEIGN 814



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 126/419 (30%), Positives = 214/419 (51%), Gaps = 45/419 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQ-QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P+   L  +L+AS   G D  C  ++H   +K G   + FV+ AL+  Y K   L  A +
Sbjct: 162 PDGCTLASVLKASGVEG-DGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMR 220

Query: 60  MFVEIPQ-PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           +F  +     V SWNS+ISG +Q+G + +AL+LF  ++R+ +  ++Y+    L  C +L 
Sbjct: 221 VFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELA 280

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            L LG  +H+ ++K   E  +   N L+ MY KCG V+ A+ VF E+ +KD ISWNS+++
Sbjct: 281 QLNLGRELHAALLKSGSEVNIQ-CNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLS 339

Query: 179 ASARNG-------------------------NLELAFGFLHRLPNPDTI---SYNEVING 210
              +NG                         +L  A G L  L N   +   +  + ++ 
Sbjct: 340 CYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDS 399

Query: 211 IAQFGD-----------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
             Q G+           IE +  +   M   +  SW +I+T Y   +R  EAL +F E Q
Sbjct: 400 DTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQ 459

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            + + +D     ++L   +GL  +     +H   I+ GL   +VV + ++D+Y +CG+V 
Sbjct: 460 KEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVY 518

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            +  MF ++ +K++VTW +MI  YA +G L + + LF ++++  D+QPDSV  +++L A
Sbjct: 519 HSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQST-DVQPDSVALVSILGA 576



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 184/401 (45%), Gaps = 45/401 (11%)

Query: 24  QLHCYILKSGFLS--NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           Q+H + + +G L   + F++T L+  Y K   +ADA  +F  +   +V SWN+LI  Y+ 
Sbjct: 79  QVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLS 138

Query: 82  SGKYRKALNLFVELERSE---IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
           SG   +AL ++  +  S    +  D  +  S L A G  G  + G  +H   VK+ L+R 
Sbjct: 139 SGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRS 198

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIAASARNGNLELAFGFLHRLP 197
             +AN LI MY KCG ++ A+ VF  M D +D+ SWNS+I+   +NG    A      + 
Sbjct: 199 TFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQ 258

Query: 198 NP-------DTISYNEVINGIAQF-------------------------------GDIED 219
                     T+   +V   +AQ                                G ++ 
Sbjct: 259 RAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLVMYTKCGRVDS 318

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
           A+ +   +   +  SWNS+L+ YV      EA+    EM       D     ++ S +  
Sbjct: 319 ALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGH 378

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
           L  L  G  +H+  IKQ LD+   V + L+DMY KC  +E +  +F  +  K+ ++W  +
Sbjct: 379 LGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTI 438

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           IT YA++    + +E+F + +    ++ D +   ++L ACS
Sbjct: 439 ITCYAQSSRHIEALEIFREAQK-EGIKVDPMMIGSILEACS 478



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 101/225 (44%), Gaps = 5/225 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L A   L      +++H ++++  F     + ++L+  Y    SL+ A K+
Sbjct: 565 PDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKV 624

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    +V W ++I+     G  ++A++LF  + ++ +  D  SF + L AC     +
Sbjct: 625 FNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLV 684

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G   +   +  Y LE       C++D+ G+ G  E+A      M +    + W S++ 
Sbjct: 685 NEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLG 744

Query: 179 ASARNGNLELAFGFLHRL--PNPDTI-SYNEVINGIAQFGDIEDA 220
           A   + N ELA    +RL    PD   +Y  V N  A+ G   +A
Sbjct: 745 ACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNA 789



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 11/157 (7%)

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           S P P S      L        + +AL L         P  E+ +  +L  +A   A+  
Sbjct: 24  SPPDPTS------LKQLCKEGNLRQALRLLTSQTPGRSPPQEH-YGWVLDLVAAKKAVAQ 76

Query: 286 GMLIHSCVIKQG-LDASI-VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
           G+ +H+  +  G L+     +A+ LL MY KCG+V  A  +F  +  + + +WNA+I  Y
Sbjct: 77  GVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAY 136

Query: 344 ARNGDLTKVIELFE--QLKTVRDLQPDSVTFLNVLAA 378
             +G   + + ++   +L     + PD  T  +VL A
Sbjct: 137 LSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKA 173


>gi|15226879|ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099187|sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g35030, mitochondrial; Flags: Precursor
 gi|3033399|gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana]
 gi|209414526|gb|ACI46503.1| At2g35030 [Arabidopsis thaliana]
 gi|330253957|gb|AEC09051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 157/486 (32%), Positives = 266/486 (54%), Gaps = 21/486 (4%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL 95
            NV   TA++  Y +   L+ A  +F E+P+ +VVSWN++I GY QSG+  KAL LF E+
Sbjct: 107 KNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEM 166

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
               I     S+ S + A  Q G +   M +  ++ +    R VV    ++D   K G V
Sbjct: 167 PERNIV----SWNSMVKALVQRGRIDEAMNLFERMPR----RDVVSWTAMVDGLAKNGKV 218

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFG 215
           ++A  +F  M +++IISWN++I   A+N  ++ A      +P  D  S+N +I G  +  
Sbjct: 219 DEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNR 278

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTML 274
           ++  A  +   MP  N  SW +++TGYV      EAL++F +M +   V  +  T+ ++L
Sbjct: 279 EMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSIL 338

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS--LCRKN 332
           S  + L+ L  G  IH  + K     + +V SALL+MYSK G++  A  MF +  +C+++
Sbjct: 339 SACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRD 398

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           L++WN+MI  YA +G   + IE++ Q++     +P +VT+LN+L ACSH  +  +K  E+
Sbjct: 399 LISWNSMIAVYAHHGHGKEAIEMYNQMRK-HGFKPSAVTYLNLLFACSHAGL-VEKGMEF 456

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR----ELGFGSYGVVWRALLSAS 448
           F+ + +D  +    EH   ++ L G+ G +      I      L    YG    A+LSA 
Sbjct: 457 FKDLVRDESLPLREEHYTCLVDLCGRAGRLKDVTNFINCDDARLSRSFYG----AILSAC 512

Query: 449 GACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAG 508
              +++ +A+    +V++   D    YV++ N+Y ++G  + A+ MR  M+E+GL+K+ G
Sbjct: 513 NVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPG 572

Query: 509 CSWIEV 514
           CSW++V
Sbjct: 573 CSWVKV 578



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      +L A SDL      QQ+H  I KS    N  V++AL+  Y K   L  A KM
Sbjct: 329 PNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKM 388

Query: 61  FVE--IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           F    + Q  ++SWNS+I+ Y   G  ++A+ ++ ++ +      A ++ + L AC   G
Sbjct: 389 FDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAG 448

Query: 119 SLQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVED 157
            ++ GM     +V+  SL        CL+D+ G+ G ++D
Sbjct: 449 LVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKD 488


>gi|30017569|gb|AAP12991.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|40539031|gb|AAR87288.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711017|gb|ABF98812.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 676

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 155/509 (30%), Positives = 262/509 (51%), Gaps = 36/509 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E     LL+ S D    +  +Q+H +++ +G  S V++  +L+  Y     +  A  M
Sbjct: 127 PDEQTFLSLLK-SVDAERRSVGKQVHAHVVVTGLHSRVYLRNSLIKMYLDAGDVEAAEAM 185

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F   P    VS N ++SGYV+ G   KAL  F  +    I  D Y+  + LA CG+L   
Sbjct: 186 FRCAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIGVDQYTAVALLACCGRLKKA 245

Query: 121 QLGMAIHSKIVKY--SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            LG ++H  +V+     +RG++++N L+DMY KCG +  A+ VF E  ++D ISW     
Sbjct: 246 VLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMRVFDEAGERDGISW----- 300

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
                                     N ++ G A  G ++ A       P+ +  SWN++
Sbjct: 301 --------------------------NTMVAGFANAGLLDLASKYFGEAPARDIISWNAL 334

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           L GY         + LF +M +  V  D+ T  T++S +AG   L     +H  V+K+  
Sbjct: 335 LAGYARYEEFSATMILFHDMLASSVIPDKVTAVTLISAVAGKGTLNSARSVHGWVVKEHG 394

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
                +ASAL+DMY KCG +++A ++F     K++  W AMI+G A +G     ++LF +
Sbjct: 395 TQDSFLASALVDMYCKCGSIKLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWK 454

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           ++     +P+ VT + VL+ACSH  + FD+  + F+++ + + I+P VEH   M+ L+ +
Sbjct: 455 MQA-EGTEPNGVTLVAVLSACSHAGL-FDEGCKIFDTLKQRFNIEPGVEHFGCMVDLLAR 512

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G +  A  + R +       +W ++LSAS AC + +VA I++ E++ LE   +  YV+L
Sbjct: 513 SGRLSDAVDLARRMPMKPSRSIWGSILSASSACQNTEVAEIASKELLCLEPAEEGGYVLL 572

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEA 507
            N+Y + G W+ ++ +R  M  +G+RK A
Sbjct: 573 SNMYAAEGQWNYSNEVRENMERKGVRKSA 601


>gi|357118286|ref|XP_003560887.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Brachypodium distachyon]
          Length = 676

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 156/520 (30%), Positives = 272/520 (52%), Gaps = 55/520 (10%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-------- 95
           L+G Y +   + +A K+F E+PQ +V SWN++++G+  +G+  KAL++F  +        
Sbjct: 132 LLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQVNKALDMFDAMPVKDSASL 191

Query: 96  --------------ERSEIYA------------DAYSFTSALAACGQLGSLQLGMAIHSK 129
                         E  E+              DAY+  + +AA GQ+G +     +   
Sbjct: 192 GTLVSGFIKNGRLHEAEELLTKRLRVTDMDEAVDAYN--TLIAAYGQVGRVSDARRLFDM 249

Query: 130 IVKYSLE----------RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           I +   +          R VV  N ++  Y + G V  A  +F EM DKD++SWN++IA 
Sbjct: 250 IPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREIFNEMPDKDLVSWNTMIAG 309

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
             +  ++E A      +P+PD +S+N +I G  Q GD+E A      MP   + SWN+++
Sbjct: 310 YTKVSDMEEAEKLFWEMPDPDIVSWNLIIRGFTQKGDVEHARGFFDRMPERGTISWNTMI 369

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           +GY        A+ LF +M       D +TFS++L+  A L  L  G  +H  + K  L 
Sbjct: 370 SGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAACASLPMLRLGAQLHQLIEKSFL- 428

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
                ++AL+ MYS+ G +  A+++F+ + +K+LV+WNA+I GY  +G  T+ ++LFE +
Sbjct: 429 PDTATSNALMTMYSRGGALTDAEAIFKQMPQKDLVSWNALIGGYEHHGCATEALQLFEDM 488

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRLM 416
           ++ R + P  +TF+++L+AC +  +    VSE    F++M  +Y I   +EH  +++ L+
Sbjct: 489 RSAR-VMPTHITFISLLSACGNAGL----VSEGWMVFDTMIHEYSIAARIEHYAALVNLI 543

Query: 417 GQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476
           G+ G++  A  +I  +       VW A L A  A  +  +A ++A  + K++ +S   YV
Sbjct: 544 GRHGQLDDALEVINSMPIAPDRSVWGAFLGACTAKKNELLAHMAAKALSKIDPESSAPYV 603

Query: 477 MLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           ++ NL+   G W  ASV+R  M ++G+ K  G SWI++ +
Sbjct: 604 LIHNLHAHEGRWGSASVVREEMEQQGIHKHPGYSWIDLHD 643



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 151/305 (49%), Gaps = 20/305 (6%)

Query: 34  FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFV 93
           F  NV    ++M  Y +   +  A ++F E+P   +VSWN++I+GY +     +A  LF 
Sbjct: 265 FARNVVSWNSMMTCYIRTGDVCSAREIFNEMPDKDLVSWNTMIAGYTKVSDMEEAEKLFW 324

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
           E+   +I     S+   +    Q G ++       ++     ERG +  N +I  Y + G
Sbjct: 325 EMPDPDI----VSWNLIIRGFTQKGDVEHARGFFDRMP----ERGTISWNTMISGYEQNG 376

Query: 154 SVEDAIGVFGEMID----KDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYN 205
             + AI +F +M++     D  +++SV+AA A    L L    LH+L      PDT + N
Sbjct: 377 HYDGAIELFTKMLEAGGTPDRHTFSSVLAACASLPMLRLG-AQLHQLIEKSFLPDTATSN 435

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
            ++   ++ G + DA  I   MP  +  SWN+++ GY +     EAL LF +M+S  V  
Sbjct: 436 ALMTMYSRGGALTDAEAIFKQMPQKDLVSWNALIGGYEHHGCATEALQLFEDMRSARVMP 495

Query: 266 DEYTFSTMLS--GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
              TF ++LS  G AGL +  W M+  + + +  + A I   +AL+++  + GQ++ A  
Sbjct: 496 THITFISLLSACGNAGLVSEGW-MVFDTMIHEYSIAARIEHYAALVNLIGRHGQLDDALE 554

Query: 324 MFRSL 328
           +  S+
Sbjct: 555 VINSM 559



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 179/442 (40%), Gaps = 82/442 (18%)

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ-LGS 119
           F  +P  SVV+WNS ++   +      A   F  +       DA S+ + LAA  + L S
Sbjct: 53  FDALPARSVVTWNSFLAALARGRDVAAARAFFASMP----VRDAVSWNTLLAAYSRSLNS 108

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
             L  A   ++     +R  V  N L+  Y + G + +A  +F EM  +++ SWN+++  
Sbjct: 109 EHLAAA--RRLFDEMPQRDAVTWNTLLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTG 166

Query: 180 SARNGNLELAFGFLHRLPNPDTIS------------------------------------ 203
               G +  A      +P  D+ S                                    
Sbjct: 167 FFSAGQVNKALDMFDAMPVKDSASLGTLVSGFIKNGRLHEAEELLTKRLRVTDMDEAVDA 226

Query: 204 YNEVINGIAQFGDIEDAIMILSSMP--------------SPNSSSWNSILTGYVNRNRVP 249
           YN +I    Q G + DA  +   +P              + N  SWNS++T Y+    V 
Sbjct: 227 YNTLIAAYGQVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVC 286

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS------ALTWGMLIHSCVIKQGLDASIV 303
            A  +F EM  KD+     +++TM++G   +S       L W M           D  IV
Sbjct: 287 SAREIFNEMPDKDL----VSWNTMIAGYTKVSDMEEAEKLFWEM----------PDPDIV 332

Query: 304 VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363
             + ++  +++ G VE A   F  +  +  ++WN MI+GY +NG     IELF ++    
Sbjct: 333 SWNLIIRGFTQKGDVEHARGFFDRMPERGTISWNTMISGYEQNGHYDGAIELFTKMLEAG 392

Query: 364 DLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW 423
              PD  TF +VLAAC+   +P  ++      + +     P      +++ +  + G + 
Sbjct: 393 G-TPDRHTFSSVLAACA--SLPMLRLGAQLHQLIEK-SFLPDTATSNALMTMYSRGGALT 448

Query: 424 RAQRMIRELGFGSYGVVWRALL 445
            A+ + +++      V W AL+
Sbjct: 449 DAEAIFKQMPQKDL-VSWNALI 469



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 95/191 (49%), Gaps = 3/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    +L A + L       QLH  I KS FL +   S ALM  Y +  +L DA  +
Sbjct: 395 PDRHTFSSVLAACASLPMLRLGAQLHQLIEKS-FLPDTATSNALMTMYSRGGALTDAEAI 453

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++PQ  +VSWN+LI GY   G   +AL LF ++  + +     +F S L+ACG  G +
Sbjct: 454 FKQMPQKDLVSWNALIGGYEHHGCATEALQLFEDMRSARVMPTHITFISLLSACGNAGLV 513

Query: 121 QLG-MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G M   + I +YS+   +     L+++ G+ G ++DA+ V   M I  D   W + + 
Sbjct: 514 SEGWMVFDTMIHEYSIAARIEHYAALVNLIGRHGQLDDALEVINSMPIAPDRSVWGAFLG 573

Query: 179 ASARNGNLELA 189
           A     N  LA
Sbjct: 574 ACTAKKNELLA 584


>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
          Length = 632

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 157/483 (32%), Positives = 254/483 (52%), Gaps = 36/483 (7%)

Query: 23  QQLHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           + +HC  LK GF+  +V V  AL+ FY    SL DA K+F E+P+  VVSW +L+ GY +
Sbjct: 162 EAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYAR 221

Query: 82  SGKYRKALNLFVELER-SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           +G   +A  LF  +     +  +A +  +A++A GQ+G L  G+ +H  + +  + R V 
Sbjct: 222 AGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVN 281

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           + N L+DM+GKCG V  A  VF  M  KD+ SW S++                       
Sbjct: 282 LDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMV----------------------- 318

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                   N  A+ GD+E A  +   MP  N  SW+ ++  Y   N+  EA+ LF EM +
Sbjct: 319 --------NAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIA 370

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIH-SCVIKQGLDASIVVASALLDMYSKCGQVE 319
             V   + T  ++LS  A L  L  G  I+ + ++   +  ++ + +AL+DM++KCG V 
Sbjct: 371 AGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVG 430

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F  +  +N+V+WN MI  +A +G   + I LFEQLK   ++ PD +TFL +LA+C
Sbjct: 431 EASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKG-ENIVPDQITFLGLLASC 489

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH+ +   +   YF+ M   Y I+P VEH   MI L+G+ G +  A  + R +   +   
Sbjct: 490 SHSGL-VSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEA 548

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
            W ALL+A     ++++    A ++++L+     +YV++  +Y S   WD   ++R  MR
Sbjct: 549 GWGALLNACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMR 608

Query: 500 ERG 502
           +RG
Sbjct: 609 DRG 611



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 147/352 (41%), Gaps = 59/352 (16%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L   + A   +G   +   LH Y+ + G   +V +  AL+  + K   +  A ++
Sbjct: 243 PNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREV 302

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA-----DAYS--------- 106
           F  +    V SW S+++ Y + G    A  LF ++ R  + +      AYS         
Sbjct: 303 FDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAV 362

Query: 107 -----------------FTSALAACGQLGSLQLGMAIHSK-IVKYSLERGVVIANCLIDM 148
                              S L+AC QLG L LG  I+   IV   +   V + N LIDM
Sbjct: 363 WLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDM 422

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISY 204
           + KCG V +A  +F EM +++++SWN++I A A +G  E A     +L      PD I++
Sbjct: 423 FAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITF 482

Query: 205 NEVINGIAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
             ++   +  G + +       M       P    +  ++        + EA  +     
Sbjct: 483 LGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEV----- 537

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           ++ +PM+        +  AG     WG L+++C +   ++    VA  L+++
Sbjct: 538 ARGMPME--------ADEAG-----WGALLNACRMHGNVEIGACVADKLVEL 576


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 164/551 (29%), Positives = 282/551 (51%), Gaps = 43/551 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQL-HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           +++V+   L+A + LG + Y  +L H + +KSG +++VFVS+AL+  Y K+        +
Sbjct: 150 DQFVVSVALKACA-LGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSV 208

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   +VVSW ++I G V +G     L+ F E+ RS++  D+++F  AL A  + G L
Sbjct: 209 FENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLL 268

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G AIH++ +K        + N L  MY KC   +  + +FG+M   D++SW ++I   
Sbjct: 269 HYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTY 328

Query: 181 ARNGNLELAFGFLHRL------PNPDTISY------------------------------ 204
            + G+ E A     R+      PN  T +                               
Sbjct: 329 VQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVDAL 388

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I   ++ G +++A ++   M   +  SW++I++ Y   +   EA +    M  +
Sbjct: 389 SVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSRE 448

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
               +E+  +++LS    ++ L  G  +H+  +  GLD   +V SAL+ MYS+ G ++ A
Sbjct: 449 GPKPNEFALASVLSVCGSMALLEPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQEA 508

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F S+   ++V+W AMI GYA +G   + I LFE + +V  L PD VTF+ +L AC+H
Sbjct: 509 SKIFDSIKNNDIVSWTAMINGYAEHGYSQEAISLFENISSV-GLMPDYVTFIGILTACNH 567

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  D    Y++ MT +Y I P+ EH   +I L+ + G +  A+ M+R + F    VVW
Sbjct: 568 AGL-VDLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRLSEAEHMVRNMPFPCDDVVW 626

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
             LL A     DLD A  +A ++++L  +S   ++ L N+Y++ G  + A+ +R  M+ +
Sbjct: 627 STLLRACRDHGDLDRAIWAAEQMLRLHPNSAGAHITLANIYSASGRREEAAHVRKLMKSK 686

Query: 502 GLRKEAGCSWI 512
           G+ KE G SWI
Sbjct: 687 GVIKEPGWSWI 697



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 198/440 (45%), Gaps = 48/440 (10%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYADAYSFT 108
           K+  + +A  MF ++     +SW +LI+GYV +    +AL LF  +   S +  D +  +
Sbjct: 96  KLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQKDQFVVS 155

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
            AL AC    ++  G  +H   VK  L   V +++ L+DMY K G  E    VF  M  +
Sbjct: 156 VALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTTR 215

Query: 169 DIISWNSVIAASARNG----------------------NLELAF------GFLH--RLPN 198
           +++SW +VI      G                         +A       G LH  +  +
Sbjct: 216 NVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAIH 275

Query: 199 PDTIS--YNEVINGIAQFGDI------EDAIM-ILSSMPSPNSSSWNSILTGYVNRNRVP 249
             TI   +NE    +   G +       D +M +   M +P+  SW +++  YV      
Sbjct: 276 AQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQMGDEE 335

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
            AL  F  M+  DV  +EYTF++++S  A L+   WG  IH   ++ GL  ++ V+++++
Sbjct: 336 RALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVDALSVSNSII 395

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
            +YSKCG ++ A  +F  + RK++++W+ +I+ Y +     +       + +    +P+ 
Sbjct: 396 TLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWM-SREGPKPNE 454

Query: 370 VTFLNVLAACSHTDI--PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQR 427
               +VL+ C    +  P  +V  Y   +  D+    T+ H  ++I +  + G +  A +
Sbjct: 455 FALASVLSVCGSMALLEPGKQVHAYALCIGLDH---ETMVH-SALISMYSRSGNLQEASK 510

Query: 428 MIRELGFGSYGVVWRALLSA 447
           +   +      V W A+++ 
Sbjct: 511 IFDSIKNNDI-VSWTAMING 529



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 136/283 (48%), Gaps = 12/283 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNEY    ++ A ++L    + +Q+H + L+ G +  + VS +++  Y K   L +A  +
Sbjct: 351 PNEYTFASVISACANLAITKWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLV 410

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  ++SW+++IS Y Q    ++A N    + R     + ++  S L+ CG +  L
Sbjct: 411 FDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALL 470

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H+  +   L+   ++ + LI MY + G++++A  +F  + + DI+SW ++I   
Sbjct: 471 EPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGY 530

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVIN-----GIAQFGDIEDAIMILSSMPSPN 231
           A +G  + A      + +    PD +++  ++      G+   G     +M      +P+
Sbjct: 531 AEHGYSQEAISLFENISSVGLMPDYVTFIGILTACNHAGLVDLGFYYYKLMTNEYQIAPS 590

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
              +  I+       R+ EA H+   M     P D+  +ST+L
Sbjct: 591 KEHYGCIIDLLCRAGRLSEAEHMVRNMP---FPCDDVVWSTLL 630



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 2/187 (1%)

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
           P+    N  +  + + G I +A  + + M   +  SW +++ GYVN     EAL LF  M
Sbjct: 82  PNMPELNSQLKQLMKLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNM 141

Query: 259 -QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
                +  D++  S  L   A    + +G L+H   +K GL  S+ V+SAL+DMY K G+
Sbjct: 142 WVDSGLQKDQFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGK 201

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
            E   S+F ++  +N+V+W A+I G    G     +  F ++   + +  DS TF   L 
Sbjct: 202 TEQGCSVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSK-VGYDSHTFAVALK 260

Query: 378 ACSHTDI 384
           A + + +
Sbjct: 261 ASAESGL 267


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 152/556 (27%), Positives = 282/556 (50%), Gaps = 44/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +L+    L        +H  I+  GF S+ FVSTAL+  Y K+  + D++K+
Sbjct: 169 PDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKV 228

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + + +VVSWN++I+G+  +  Y  A +LF+ +    +  DA +F     A G L  +
Sbjct: 229 FNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDV 288

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGE--MIDKDIISWNSVIA 178
                +    ++  ++   ++   LIDM  KCGS+++A  +F    +  +    WN++I+
Sbjct: 289 NKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMIS 348

Query: 179 ASARNGNLELAFGFLHRLPNPDT------------------------------------I 202
              R+G  E A     ++   D                                     +
Sbjct: 349 GYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEV 408

Query: 203 SY----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
           +Y    N V N  A+ G +ED   + + M   +  SW S++T Y   +   +A+ +F  M
Sbjct: 409 NYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNM 468

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           +++ +  +++TFS++L   A L  L +G  +H  + K GLD    + SAL+DMY+KCG +
Sbjct: 469 RAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCL 528

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
             A  +F  +   + V+W A+I G+A++G +   ++LF ++  +  ++P++VTFL VL A
Sbjct: 529 GDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQL-GVEPNAVTFLCVLFA 587

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH  +  + + +YF+ M K YG+ P +EH   ++ L+ + G +  A   I  +      
Sbjct: 588 CSHGGLVEEGL-QYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNE 646

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
           +VW+ LL A     ++++  ++A +++  + ++   YV+L N Y   G++     +R+ M
Sbjct: 647 MVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVM 706

Query: 499 RERGLRKEAGCSWIEV 514
           +E+G++KE GCSWI V
Sbjct: 707 KEQGVKKEPGCSWISV 722



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 205/420 (48%), Gaps = 45/420 (10%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCYILKSGFLSN--VFVSTALMGFYRKINSLADAHKMFVE 63
           L  LLR   D  +    + +H ++LKS F ++  + +   +   Y K + +  A ++F +
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
           + Q +  SW  LI+G  ++G +      F E++   I+ D ++++  L  C  L S++LG
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
             +H++IV         ++  L++MY K   +ED+  VF  M + +++SWN++I     N
Sbjct: 191 NMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSN 250

Query: 184 GNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDA---------------IMIL 224
                AF    R+      PD  ++  V   I    D+  A                ++ 
Sbjct: 251 DLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVG 310

Query: 225 SSMPSPNS----------------------SSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
           +++   NS                      + WN++++GY+      +AL LF +M   D
Sbjct: 311 TALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQND 370

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV-VASALLDMYSKCGQVEIA 321
           + +D YT+ ++ + IA L  L+ G  +H+  IK GL+ + V +++A+ + Y+KCG +E  
Sbjct: 371 IYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDV 430

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  ++L++W +++T Y++  +  K IE+F  ++    + P+  TF +VL +C++
Sbjct: 431 RKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRA-EGIAPNQFTFSSVLVSCAN 489


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 152/480 (31%), Positives = 259/480 (53%), Gaps = 10/480 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV     ++  +     + +A  +F E+P  ++VSWN++I  YV+  +   A  LF+E+ 
Sbjct: 232 NVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMP 291

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
                 D+ S+T+ +    ++G L     I + ++ Y   + +     +I+ Y + G ++
Sbjct: 292 EK----DSVSWTAMINGYVRVGKLLQAREILN-LMPY---KNIAAQTAMINGYLQSGRMD 343

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           +A  +F ++  +D + WNS+I   A  G  + A      +   D +S+N +I   AQ G 
Sbjct: 344 EANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQ 403

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           ++ A+ + + M   N  SWNS++TGYV      EAL+ F  M+ +    D+ T    L  
Sbjct: 404 MDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRA 463

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            A L+AL  G+ +H   IK G    + V +A+L MY+K G+V  A+++F  +  K++V+W
Sbjct: 464 SANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSW 523

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           N++I GYA NG   + +ELFE +  +R + PD VTF  +L+AC+H     D+    F+SM
Sbjct: 524 NSLIAGYALNGCGKEAVELFEVM-PLRGIIPDEVTFTGLLSACNHGGF-VDQGLNLFKSM 581

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
           T+ Y IKP  EH   +I L+G+ G +  A  +++ +   S   +W ALL A     +L++
Sbjct: 582 TETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLEL 641

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           A+ SA  ++ LE  +   YV+L N++   G WD+   +R  M+E    K+ GCSWIE++N
Sbjct: 642 AKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAEKQPGCSWIEIDN 701



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 197/385 (51%), Gaps = 36/385 (9%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           N+    +++  Y K   +A+A ++F  +PQ ++VSWNS+I+GY+ +     A  LF  + 
Sbjct: 45  NIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMF 104

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           + +IY    S+T  +    ++G L+    + + +     ++  V  N LI  Y K     
Sbjct: 105 KRDIY----SWTLMITCYTRIGELEKARELFNLLPD---KQDTVCRNALIAGYAKKRLFR 157

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           +A  +F EM+ K+++SWNS+++   +NG ++L   F   +   + +S+N +++G    GD
Sbjct: 158 EAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGD 217

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP-----MDEYTFS 271
           ++ A M    +P+PN  SW ++L+G+ +  R+ EA +LF EM +K++      +  Y   
Sbjct: 218 LDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRE 277

Query: 272 TMLSGIAGL-------SALTWGMLIHSCV-IKQGLDA----------SIVVASALLDMYS 313
             +     L        +++W  +I+  V + + L A          +I   +A+++ Y 
Sbjct: 278 NQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYL 337

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           + G+++ A+ +F  +  ++ V WN+MITGYA  G   + + LF+++     +  D V++ 
Sbjct: 338 QSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEM-----VCKDMVSWN 392

Query: 374 NVLAACSHTDIPFDKVSEYFESMTK 398
            ++AA +      DK  E F  M +
Sbjct: 393 TMIAAYAQAG-QMDKALEMFNEMQE 416



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 127/253 (50%), Gaps = 14/253 (5%)

Query: 131 VKYSLERG--VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
           VK   E+G  V   N  I   G+ G +E+A+ VF +M +++I+++NS+I+A A+NG +  
Sbjct: 5   VKSIGEKGSYVFTQNLRISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIAN 64

Query: 189 AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV 248
           A      +P  + +S+N +I G      +EDA  +   M   +  SW  ++T Y     +
Sbjct: 65  ARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGEL 124

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
            +A  LF  +  K    D    + +++G A              +  + L  ++V  +++
Sbjct: 125 EKARELFNLLPDKQ---DTVCRNALIAGYAKKRLFREA----KKLFDEMLVKNVVSWNSI 177

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           L  Y+K G++++    F ++  +N+V+WN M+ GY   GDL      F+++ T     P+
Sbjct: 178 LSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPT-----PN 232

Query: 369 SVTFLNVLAACSH 381
            V+++ +L+  +H
Sbjct: 233 VVSWVTMLSGFAH 245



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  +   LRAS++L       QLH   +K+GF +++FV  A++  Y K   + +A  +
Sbjct: 452 PDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENV 511

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EI    VVSWNSLI+GY  +G  ++A+ LF  +    I  D  +FT  L+AC   G +
Sbjct: 512 FAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFV 571

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS---WNSV 176
             G+ +   + + YS++       C+I++ G+ G +E+A+ +   M  K + S   W ++
Sbjct: 572 DQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGM--KTVSSAKIWGAL 629

Query: 177 IAASARNGNLELA 189
           + A   + NLELA
Sbjct: 630 LWACRIHHNLELA 642


>gi|347954470|gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
          Length = 811

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 154/525 (29%), Positives = 287/525 (54%), Gaps = 13/525 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +   L AS+++      +Q H   + +G   +  + T+L+ FY K+  +  A  +
Sbjct: 252 PTRVTVSTCLSASANMVGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMV 311

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VV+WN LISGYVQ G    A+ +   +   ++  D  + ++ ++A  +  +L
Sbjct: 312 FDRMFDKDVVTWNLLISGYVQQGLVEDAIYMSQLMRLEKLKYDCVTLSTLMSAAARTENL 371

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +    +++SL+  +V+A+  +DMY KCGS+ DA  VF   ++KD+I WN+++AA 
Sbjct: 372 KFGKEVQCYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAY 431

Query: 181 ARNG----NLELAFGF-LHRLPNPDTISYNEVINGIAQFGDIEDA----IMILSSMPSPN 231
           A++G     L L +   L  +P P+ I++N +I  + + G++ +A    + + SS  SPN
Sbjct: 432 AQSGLSGEALRLFYEMQLESVP-PNVITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPN 490

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SW +++ G V      EA+    +MQ   +  + ++ +  LS  A L++L +G  IH 
Sbjct: 491 LISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSASANLASLHFGRSIHG 550

Query: 292 CVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
            +I+     +S+ + ++L+DMY+KCG +  A+ +F S     L  +NAMI+ YA  G++ 
Sbjct: 551 YIIRNLRHSSSVSIETSLVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVK 610

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + I L+  L+ +  ++PDSVTF ++L+AC+H     D+    F +M   +G+ P +EH  
Sbjct: 611 EAIALYRSLEDM-GIKPDSVTFTSLLSACNHAG-DIDQAVGVFTAMVLKHGMTPCLEHYG 668

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            M+ L+   GE  +A R+I E+ +     + ++L+++       ++    +  +++ E +
Sbjct: 669 LMVDLLASAGETEKAIRLIEEMPYKPDARMIQSLVASCNKQHKTELVEYLSRHLLESEPE 728

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           +   YV + N Y   G+WD    MR  M+ +GL+K+ GCSWI+++
Sbjct: 729 NSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQIK 773



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 134/481 (27%), Positives = 234/481 (48%), Gaps = 49/481 (10%)

Query: 23  QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H  ILK+G  +  N ++ T L+ FY K ++L  A  +F ++   +V SW ++I    
Sbjct: 70  KQIHARILKNGDFYARNEYIETKLVIFYAKCDALEXAEVIFSKLRVRNVFSWAAIIGVKC 129

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + G    AL  FVE+  +EI+ D +   +   ACG L   + G  +H  ++K  LE  V 
Sbjct: 130 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVIKAGLEDCVF 189

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
           +A+ L DMYGKCG ++DA  VF E+ ++++++WN+++    +NG  E A      +    
Sbjct: 190 VASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEG 249

Query: 197 --PNPDTISYN-------------------EVINGI--------------AQFGDIEDAI 221
             P   T+S                      ++NG+               + G IE A 
Sbjct: 250 VEPTRVTVSTCLSASANMVGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAE 309

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           M+   M   +  +WN +++GYV +  V +A+++   M+ + +  D  T ST++S  A   
Sbjct: 310 MVFDRMFDKDVVTWNLLISGYVQQGLVEDAIYMSQLMRLEKLKYDCVTLSTLMSAAARTE 369

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L +G  +    I+  LD  IV+AS  +DMY+KCG +  A  +F S   K+L+ WN ++ 
Sbjct: 370 NLKFGKEVQCYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLA 429

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTF-LNVLAACSHTDIPFDKVSEYFESMTKDY 400
            YA++G   + + LF +++ +  + P+ +T+ L +L+   + ++  ++  E F  M +  
Sbjct: 430 AYAQSGLSGEALRLFYEMQ-LESVPPNVITWNLIILSLLRNGEV--NEAKEMFLQM-QSS 485

Query: 401 GIKPTVEHCCSMIRLMGQKG---EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
           GI P +    +M+  M Q G   E     R ++E G           LSAS   + L   
Sbjct: 486 GISPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSASANLASLHFG 545

Query: 458 R 458
           R
Sbjct: 546 R 546



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 117/485 (24%), Positives = 215/485 (44%), Gaps = 97/485 (20%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +V+ ++ +A   L W  + + +H Y++K+G    VFV+++L   Y K   L DA K+
Sbjct: 151 PDNFVVPNVCKACGALQWSRFGRGVHGYVIKAGLEDCVFVASSLADMYGKCGVLDDARKV 210

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EIP+ +VV+WN+L+ GYVQ+G   +A+ LF ++ +  +     + ++ L+A   +  +
Sbjct: 211 FDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMVGV 270

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN------ 174
           + G   H+  +   LE   ++   L++ Y K G +E A  VF  M DKD+++WN      
Sbjct: 271 EEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMFDKDVVTWNLLISGY 330

Query: 175 -----------------------------SVIAASARNGNLELA-----FGFLHRLPNPD 200
                                        ++++A+AR  NL+       +   H L + D
Sbjct: 331 VQQGLVEDAIYMSQLMRLEKLKYDCVTLSTLMSAAARTENLKFGKEVQCYCIRHSL-DTD 389

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +  +  ++  A+ G I DA  +  S    +   WN++L  Y       EAL LF EMQ 
Sbjct: 390 IVLASTTMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAQSGLSGEALRLFYEMQL 449

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           + VP +                +TW ++I S +                    + G+V  
Sbjct: 450 ESVPPN---------------VITWNLIILSLL--------------------RNGEVNE 474

Query: 321 ADSMFRSL----CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           A  MF  +       NL++W  M+ G  +NG   + I    +++    L+P++ +    L
Sbjct: 475 AKEMFLQMQSSGISPNLISWTTMMNGMVQNGCSEEAILFLRKMQE-SGLRPNAFSITVAL 533

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIK-----PTVEHCCSMIRLMGQKGEVWRAQRMIRE 431
           +A ++        S +F      Y I+      +V    S++ +  + G++ +A+R+   
Sbjct: 534 SASANL------ASLHFGRSIHGYIIRNLRHSSSVSIETSLVDMYAKCGDINKAERV--- 584

Query: 432 LGFGS 436
             FGS
Sbjct: 585 --FGS 587



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 22/226 (9%)

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
           P+S+S+   ++       + EAL L  EM  ++  +    +   L G      L+ G  I
Sbjct: 13  PSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNXRIGPEIYGEXLQGCVYERDLSTGKQI 72

Query: 290 HSCVIKQG--LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR-- 345
           H+ ++K G     +  + + L+  Y+KC  +E A+ +F  L  +N+ +W A+I    R  
Sbjct: 73  HARILKNGDFYARNEYIETKLVIFYAKCDALEXAEVIFSKLRVRNVFSWAAIIGVKCRIG 132

Query: 346 --NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
              G L   +E+ E      ++ PD+    NV  AC             F      Y IK
Sbjct: 133 LCEGALMGFVEMLEN-----EIFPDNFVVPNVCKACGALQWS------RFGRGVHGYVIK 181

Query: 404 PTVEHCC----SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
             +E C     S+  + G+ G +  A+++  E+   +  V W AL+
Sbjct: 182 AGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV-VAWNALM 226


>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Vitis vinifera]
          Length = 729

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 154/532 (28%), Positives = 278/532 (52%), Gaps = 46/532 (8%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV---VSWNSLIS 77
           + +++H  ++K+GFL    V  AL+  Y     +ADA+++F E  + +V   +++N +I 
Sbjct: 202 FGREVHTLVIKTGFLVRASVINALLTMYFNSGKVADAYEVFEE-AESTVHDDITFNVMIG 260

Query: 78  GYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER 137
           G    G+  +AL +F E++ + +     +F S +++C    S ++   +H++ +K   E 
Sbjct: 261 GLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSSCS---SARVSHQVHAQAIKMGFEA 317

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE----LAFGFL 193
              ++N  + MY  CG++     VF  + +KD+ISWN +I   A+ GN      LAF  +
Sbjct: 318 CTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISWNIIIMNYAQ-GNFYRLAILAFLQM 376

Query: 194 HRL---PNPDTISY------------------------------NEVINGIAQFGDIEDA 220
            R    P+  TI                                N +++  ++ G IE A
Sbjct: 377 QRAGIEPDEFTIGSLLASSESLEIVKMFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQA 436

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             + ++M SPN  SWN+I++G++      + L  F E+    +  + YT S +LS  A +
Sbjct: 437 YQVFNNMSSPNLISWNTIISGFLFNGFTLQGLEQFYELLMSTLKPNAYTLSIVLSICASI 496

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           SAL  G  IH  +++ G+ +   + +AL+ MY+KCG ++ +  +F  +  +++V+WNAMI
Sbjct: 497 SALRHGKQIHGYILRSGVFSVTSLGNALITMYAKCGDLDWSLRIFNVMNGRDIVSWNAMI 556

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           + YA++G   + +  F+ ++    ++PD  TF  VL+ACSH  +  D  +  F SM  DY
Sbjct: 557 SAYAQHGKGKEAVHFFKAMQDSGGVKPDQATFTAVLSACSHAGL-VDDGTRIFNSMVNDY 615

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
           G +P  +H   ++ L+G+ G +  A+R+I          +W  L SA  A  +L + RI 
Sbjct: 616 GFEPGADHLSCIVDLLGRAGYLEEAERLINSKHLKIVSSIWWTLFSACAAHGNLRLGRIV 675

Query: 461 AAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           A  ++++E +   VYV+L N+Y + G W+ A+  R+ M++  + K+ GCSWI
Sbjct: 676 AGFLLEIEQNDPAVYVLLSNIYAAAGQWEEAANTRDLMQKTRVAKQPGCSWI 727



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 190/449 (42%), Gaps = 74/449 (16%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + L   L A ++L +     QLH Y +++G  +   V   L+ FY K   L    ++
Sbjct: 51  PDHFTLSSTLTACANLRYAASGNQLHAYSIQTGLKAYTHVGNTLLSFYAKSKDLVSVQRV 110

Query: 61  FVEIPQPSVVSW-------------------------------NSLISGYVQSGKYRKAL 89
           F EI  P V SW                               N++I+G  ++     AL
Sbjct: 111 FNEIENPDVYSWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNAIITGCAENKHTEIAL 170

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
           NLF E+ +  +  D Y+F S L+ C  L  L  G  +H+ ++K        + N L+ MY
Sbjct: 171 NLFREMHQLGVRHDKYTFASVLSLCS-LELLDFGREVHTLVIKTGFLVRASVINALLTMY 229

Query: 150 GKCGSVEDAIGVF--GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTIS 203
              G V DA  VF   E    D I++N +I   A  G  E A      +      P  ++
Sbjct: 230 FNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALIMFKEMQEACLRPTELT 289

Query: 204 Y--------------------------------NEVINGIAQFGDIEDAIMILSSMPSPN 231
           +                                N  +   +  G++    M+   +   +
Sbjct: 290 FVSVMSSCSSARVSHQVHAQAIKMGFEACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKD 349

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SWN I+  Y   N    A+  F +MQ   +  DE+T  ++L+    L  +    +  +
Sbjct: 350 LISWNIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGSLLASSESLEIVK---MFQA 406

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
            V K GL++ I V++AL+  +SK GQ+E A  +F ++   NL++WN +I+G+  NG   +
Sbjct: 407 LVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQVFNNMSSPNLISWNTIISGFLFNGFTLQ 466

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            +E F +L  +  L+P++ T   VL+ C+
Sbjct: 467 GLEQFYEL-LMSTLKPNAYTLSIVLSICA 494



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 145/315 (46%), Gaps = 36/315 (11%)

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGSLQLGMAIH 127
           ++  N L++   +S     ++ LFV++  S  +  D ++ +S L AC  L     G  +H
Sbjct: 17  LIKINQLLAELTRSHHNSASVQLFVQIHSSNYLKPDHFTLSSTLTACANLRYAASGNQLH 76

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
           +  ++  L+    + N L+  Y K                KD++S   V           
Sbjct: 77  AYSIQTGLKAYTHVGNTLLSFYAK---------------SKDLVSVQRV----------- 110

Query: 188 LAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
                 + + NPD  S+  +++   + G I  A  + +  P      WN+I+TG      
Sbjct: 111 -----FNEIENPDVYSWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNAIITGCAENKH 165

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307
              AL+LF EM    V  D+YTF+++LS +  L  L +G  +H+ VIK G      V +A
Sbjct: 166 TEIALNLFREMHQLGVRHDKYTFASVLS-LCSLELLDFGREVHTLVIKTGFLVRASVINA 224

Query: 308 LLDMYSKCGQVEIADSMFRSL--CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           LL MY   G+V  A  +F        + +T+N MI G A  G   + + +F++++    L
Sbjct: 225 LLTMYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALIMFKEMQEA-CL 283

Query: 366 QPDSVTFLNVLAACS 380
           +P  +TF++V+++CS
Sbjct: 284 RPTELTFVSVMSSCS 298



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y L  +L   + +    + +Q+H YIL+SG  S   +  AL+  Y K   L  + ++
Sbjct: 481 PNAYTLSIVLSICASISALRHGKQIHGYILRSGVFSVTSLGNALITMYAKCGDLDWSLRI 540

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS-EIYADAYSFTSALAACGQLGS 119
           F  +    +VSWN++IS Y Q GK ++A++ F  ++ S  +  D  +FT+ L+AC   G 
Sbjct: 541 FNVMNGRDIVSWNAMISAYAQHGKGKEAVHFFKAMQDSGGVKPDQATFTAVLSACSHAGL 600

Query: 120 LQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNSVI 177
           +  G  I + +V  Y  E G    +C++D+ G+ G +E+A  +      K + S W ++ 
Sbjct: 601 VDDGTRIFNSMVNDYGFEPGADHLSCIVDLLGRAGYLEEAERLINSKHLKIVSSIWWTLF 660

Query: 178 AASARNGNLELA---FGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220
           +A A +GNL L     GFL  +   D   Y  + N  A  G  E+A
Sbjct: 661 SACAAHGNLRLGRIVAGFLLEIEQNDPAVYVLLSNIYAAAGQWEEA 706


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 133/420 (31%), Positives = 240/420 (57%), Gaps = 3/420 (0%)

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           ++++   +++F+S + AC  +  L  G A+H  I KY  +  V +   L+D YG  G + 
Sbjct: 3   QAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIV 62

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           +A  VF EM ++D+ +W ++I+  AR G++  A      +P  +T S+N +I+G ++  +
Sbjct: 63  EARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRN 122

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           +E A ++ S MP+ +  SW +++  Y    +  EAL +F EMQ+  +  DE T +T++S 
Sbjct: 123 VESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISA 182

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            A L AL  G  IH   ++ G D  + + SAL+DMY+KCG ++ +  +F  L +KNL  W
Sbjct: 183 CAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCW 242

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           N++I G A +G   + + +F +++  + ++P+ VTF++VL AC+H  +  ++  + F SM
Sbjct: 243 NSIIEGLAVHGYAEEALAMFSRMQREK-IKPNGVTFISVLGACTHAGL-VEEGRKRFLSM 300

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
           ++D+ I P +EH   M+ L+G+ G +  A  ++R +      V+W ALL       +L +
Sbjct: 301 SRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKI 360

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEA-GCSWIEVE 515
           A+++  E   LE ++   Y +L N+Y     W   + +R  M+E G+ K + G SWIE++
Sbjct: 361 AQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEMD 420



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 123/246 (50%), Gaps = 42/246 (17%)

Query: 43  ALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA 102
           A++  Y ++ ++  A  +F ++P   ++SW ++I+ Y Q+ ++R+AL +F E++ + I  
Sbjct: 112 AMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDP 171

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
           D  +  + ++AC  LG+L LG  IH   ++   +  V I + LIDMY KCGS++ ++ VF
Sbjct: 172 DEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVF 231

Query: 163 GEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------PN------------------ 198
            ++  K++  WNS+I   A +G  E A     R+      PN                  
Sbjct: 232 FKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVE 291

Query: 199 ----------------PDTISYNEVINGIAQFGDIEDAIMILSSMP-SPNSSSWNSILTG 241
                           P+   Y  +++ + + G +EDA+ ++ SM   PNS  W ++L G
Sbjct: 292 EGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGG 351

Query: 242 -YVNRN 246
             ++RN
Sbjct: 352 CKLHRN 357



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 102/191 (53%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +  ++ A + LG     +++H Y ++ GF  +V++ +AL+  Y K  SL  +  +
Sbjct: 171 PDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVV 230

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ + ++  WNS+I G    G   +AL +F  ++R +I  +  +F S L AC   G +
Sbjct: 231 FFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLV 290

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G      + + +S+   +    C++D+ GK G +EDA+ +   M ++ + + W +++ 
Sbjct: 291 EEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLG 350

Query: 179 ASARNGNLELA 189
               + NL++A
Sbjct: 351 GCKLHRNLKIA 361



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 120/292 (41%), Gaps = 33/292 (11%)

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M    V    +TFS+++   + +S L +G  +H  + K G D+ + V +AL+D Y   G+
Sbjct: 1   MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT---------------V 362
           +  A  +F  +  +++  W  MI+ +AR GD++   +LF+++                 +
Sbjct: 61  IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRL 120

Query: 363 RDLQPDSVTFLNV----------LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412
           R+++   + F  +          + AC   +  F +    F  M  + GI P      ++
Sbjct: 121 RNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTN-GIDPDEVTMATI 179

Query: 413 IRLMGQKGEVWRAQRM---IRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469
           I      G +   + +     E+GF     +  AL+     C  LD + +      KL  
Sbjct: 180 ISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVV---FFKLRK 236

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAHS 521
            + + +  +      HG  + A  M + M+   + K  G ++I V     H+
Sbjct: 237 KNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKI-KPNGVTFISVLGACTHA 287


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 150/503 (29%), Positives = 262/503 (52%), Gaps = 36/503 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLAD--AHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H ++L+ G   + ++ T L+    K+    D  A ++   +   +   W ++I GY 
Sbjct: 66  KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYA 125

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
             GK+ +A+ ++  + + EI   +++F++ L ACG +  L LG   H++  +      V 
Sbjct: 126 IEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVY 185

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           + N +IDMY KC S++ A  VF EM                               P  D
Sbjct: 186 VGNTMIDMYVKCESIDCARKVFDEM-------------------------------PERD 214

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            IS+ E+I   A+ G++E A  +  S+P+ +  +W +++TG+    +  EAL  F  M+ 
Sbjct: 215 VISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEK 274

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS--IVVASALLDMYSKCGQV 318
             +  DE T +  +S  A L A  +         K G   S  +V+ SAL+DMYSKCG V
Sbjct: 275 SGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNV 334

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           E A ++F S+  KN+ T+++MI G A +G   + + LF  + T  +++P++VTF+  L A
Sbjct: 335 EEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMA 394

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH+ +  D+  + F+SM + +G++PT +H   M+ L+G+ G +  A  +I+ +    +G
Sbjct: 395 CSHSGL-VDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHG 453

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
            VW ALL A    ++ ++A I+A  + +LE D    Y++L N+Y S G+W     +R  +
Sbjct: 454 GVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLI 513

Query: 499 RERGLRKEAGCSWIEVENVAAHS 521
           +E+GL+K    SW+  +N   H 
Sbjct: 514 KEKGLKKTPAVSWVVDKNGQMHK 536



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG--QVEIADSM 324
           E   S+++S +     L     IH  V+++GLD S  + + L+   +K G      A  +
Sbjct: 46  ELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRV 105

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
              +  +N   W A+I GYA  G   + I ++  ++   ++ P S TF  +L AC
Sbjct: 106 IEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRK-EEITPVSFTFSALLKAC 159


>gi|242063912|ref|XP_002453245.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
 gi|241933076|gb|EES06221.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
          Length = 603

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 146/477 (30%), Positives = 256/477 (53%), Gaps = 15/477 (3%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           Y K   + +A ++F   P P+    N+L+SGY + G  + A +LF  ++      D  S+
Sbjct: 127 YMKRKRVREAREIFDRAPSPTTSVCNALLSGYAEHGYLKDAEDLFGRMQT----PDLVSW 182

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
            + +    + G +Q+   +  ++     E+  V    ++  Y + G V+ A  VF +M D
Sbjct: 183 NAMITGYTRAGMMQVAQRLFDEMP----EKDTVSWTAIVRGYLQNGDVDAAWKVFQDMPD 238

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           +D+++WN++++    +  L+ A      +P+ D +S+N ++ G  Q GD++ A      M
Sbjct: 239 RDVLAWNTMMSGFVVSERLDDALRLFADMPDRDLVSWNTILQGYVQQGDMDGATAWFRKM 298

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
           P  + +SWN++++GY +      AL+L  EM       D+ T+S  +S  + L+AL  G 
Sbjct: 299 PEKDEASWNTLISGYKDEG----ALNLLSEMTQGGYRPDQATWSVAISICSSLAALGCGR 354

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
           ++H C IK G +   +V S+L+ MYSKCG +  A  +F  + +++ VTWNAMI  YA +G
Sbjct: 355 MVHVCTIKTGFERDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHG 414

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407
              + + LF+++ T     PD  TFL+VL+AC+H    ++    +F SM +D+ + P  +
Sbjct: 415 LAAEALTLFDRM-TKDGFSPDHATFLSVLSACAHKGYLYEGC-HHFRSMQQDWNLIPRSD 472

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
           H   M+ L+G+ G V +A    R +        W  L S+  A  D+ +  + A  V++ 
Sbjct: 473 HYSCMVDLLGRSGFVHQAYNFTRRIPSDLQINAWETLFSSCNAHGDIQLGELVAKNVLQS 532

Query: 468 EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE-NVAAHSSN 523
                 +Y +L N+Y + G W  A+ +R  M+E+GL+KE GCSWIE++ +V + SSN
Sbjct: 533 RPSDGGMYTLLSNIYAAKGMWSSAASVRGLMKEQGLKKETGCSWIELKGDVVSFSSN 589



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 159/351 (45%), Gaps = 44/351 (12%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A ++F E+ + +V +WN +ISG V++G    A  +F  +     + ++ S+ + L    +
Sbjct: 12  ARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTMP----FRNSVSWAALLTGYAR 67

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
            G +     +  ++     +R VV  N +I  Y   G V+ A  +F  M  ++ +SW  +
Sbjct: 68  CGRVAEARELFDRMP----DRSVVSWNAMISGYLWNGMVDRARDLFDVMPARNDVSWLMM 123

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
           I+   +   +  A     R P+P T   N +++G A+ G ++DA  +   M +P+  SWN
Sbjct: 124 ISGYMKRKRVREAREIFDRAPSPTTSVCNALLSGYAEHGYLKDAEDLFGRMQTPDLVSWN 183

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG----------------IAGL 280
           +++TGY     +  A  LF EM  KD      +++ ++ G                +   
Sbjct: 184 AMITGYTRAGMMQVAQRLFDEMPEKDT----VSWTAIVRGYLQNGDVDAAWKVFQDMPDR 239

Query: 281 SALTWGMLIHSCVIKQGLDAS-----------IVVASALLDMYSKCGQVEIADSMFRSLC 329
             L W  ++   V+ + LD +           +V  + +L  Y + G ++ A + FR + 
Sbjct: 240 DVLAWNTMMSGFVVSERLDDALRLFADMPDRDLVSWNTILQGYVQQGDMDGATAWFRKMP 299

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            K+  +WN +I+GY   G L  + E+     T    +PD  T+   ++ CS
Sbjct: 300 EKDEASWNTLISGYKDEGALNLLSEM-----TQGGYRPDQATWSVAISICS 345



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 117/226 (51%), Gaps = 13/226 (5%)

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVING 210
           + G V  A  VF EM ++++ +WN +I+   RNG L  A G    +P  +++S+  ++ G
Sbjct: 5   RAGRVGAARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTMPFRNSVSWAALLTG 64

Query: 211 IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
            A+ G + +A  +   MP  +  SWN++++GY+    V  A  LF  M ++    ++ ++
Sbjct: 65  YARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLFDVMPAR----NDVSW 120

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
             M+SG      +     I      +    +  V +ALL  Y++ G ++ A+ +F  +  
Sbjct: 121 LMMISGYMKRKRVREAREI----FDRAPSPTTSVCNALLSGYAEHGYLKDAEDLFGRMQT 176

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            +LV+WNAMITGY R G +     LF+++      + D+V++  ++
Sbjct: 177 PDLVSWNAMITGYTRAGMMQVAQRLFDEMP-----EKDTVSWTAIV 217



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 4/170 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H   +K+GF  +  V ++L+  Y K   + +A ++F  I Q   V+WN++I+ Y   
Sbjct: 354 RMVHVCTIKTGFERDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYH 413

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG-MAIHSKIVKYSLERGVVI 141
           G   +AL LF  + +     D  +F S L+AC   G L  G     S    ++L      
Sbjct: 414 GLAAEALTLFDRMTKDGFSPDHATFLSVLSACAHKGYLYEGCHHFRSMQQDWNLIPRSDH 473

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKD--IISWNSVIAASARNGNLELA 189
            +C++D+ G+ G V  A   F   I  D  I +W ++ ++   +G+++L 
Sbjct: 474 YSCMVDLLGRSGFVHQAYN-FTRRIPSDLQINAWETLFSSCNAHGDIQLG 522


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 157/527 (29%), Positives = 269/527 (51%), Gaps = 35/527 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  +LK+      FV   L+  +     +  A  +F +I  P V+ +N+LI  +V++
Sbjct: 34  KQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRN 93

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            +   A ++F E++ S + AD +++   L AC     +++   IH+++ K      + + 
Sbjct: 94  SEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVP 153

Query: 143 NCLIDMYGKCG--SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           N LID Y KCG   V  A  VF  M ++D +SWNS+I    + G L  A      +P  D
Sbjct: 154 NSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERD 213

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN---------------- 244
           T+S+N +++G  + G++  A  +   MP+ N  SW++++ GY                  
Sbjct: 214 TVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPV 273

Query: 245 RNRVP---------------EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
           +N VP               +A++L+ +M+   +  D+ T  ++LS  A    L  G  +
Sbjct: 274 KNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRV 333

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H+ + +     S  V++AL+DMY+KCG +E A S+F  + RK++V+WNA+I G A +G  
Sbjct: 334 HASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHG 393

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409
            K ++LF ++K      PD VTF+ VL AC+H     D+   YF +M +DYG+ P VEH 
Sbjct: 394 EKALQLFSRMKG-EGFVPDKVTFVGVLCACTHAGF-VDEGLHYFHAMERDYGVPPEVEHY 451

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469
             M+ L+G+ G +  A R++  +      ++W  LL A    S   +A      ++K E 
Sbjct: 452 GCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSEL 511

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
                  ML N+Y + G+WD  + +R  M+   ++K +G S IEV++
Sbjct: 512 SDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDD 558



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 139/314 (44%), Gaps = 55/314 (17%)

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
           S L  C  L  ++    IH++++K +L R   +   LI  +  C  +  A+ VF ++ D 
Sbjct: 22  SDLHRCSSLNQVK---QIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDP 78

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISY-------------------- 204
           D++ +N++I A  RN    LAF     + +     D  +Y                    
Sbjct: 79  DVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIH 138

Query: 205 ---------------NEVINGIAQFG--DIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
                          N +I+   + G   +  A  +   M   ++ SWNS++ G V    
Sbjct: 139 AQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGE 198

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA-S 306
           + EA  LF EM  +D      +++T+L G      +  G +  +  + + + A  VV+ S
Sbjct: 199 LGEARRLFDEMPERDT----VSWNTILDGY-----VKAGEMNAAFELFEKMPARNVVSWS 249

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
            ++  YSK G +++A  +F  +  KNLV W  MI+GYA  G     I L+ Q++    L+
Sbjct: 250 TMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEA-GLK 308

Query: 367 PDSVTFLNVLAACS 380
            D  T +++L+AC+
Sbjct: 309 FDDGTVISILSACA 322



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 1/107 (0%)

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           +S +   S+L     IH+ V+K  L     V   L+  +S C Q+ +A ++F  +   ++
Sbjct: 21  ISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDV 80

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           + +N +I  + RN +      +F +++    +  D+ T+  +L ACS
Sbjct: 81  LLYNTLIRAHVRNSEPLLAFSVFFEMQD-SGVCADNFTYPFLLKACS 126


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 160/502 (31%), Positives = 269/502 (53%), Gaps = 46/502 (9%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKI---NSLADAHKMFVEIPQPSVVSWNSLISGY 79
           +Q H  I++ G  S+  +   L+ F  +    ++L  A K+F  IPQP    +N++I G+
Sbjct: 39  RQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYNTIIKGF 98

Query: 80  VQSG--KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER 137
           + S        L L+  + ++ +  + ++F S L AC ++   Q GM IH+ + K+    
Sbjct: 99  LHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKI---QHGMQIHAHLFKFGFGA 155

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
             V  N LI MY    ++E+A  VF                               H +P
Sbjct: 156 HSVCLNSLIHMYVTFQALEEARRVF-------------------------------HTIP 184

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
           +PD++S+  +I+G +++G I++A  I   MP  NS+SWN+++  YV  NR  EA  LF  
Sbjct: 185 HPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDR 244

Query: 258 MQSKDVP-MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           M++++   +D++  +TMLS   GL AL  G  IH  + + G++    + +A++DMY KCG
Sbjct: 245 MKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCG 304

Query: 317 QVEIADSMFRSL---CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
            +E A  +F SL   CR  + +WN MI G A +G+    I+LF++++  R + PD +TFL
Sbjct: 305 CLEKALQVFHSLPLPCRW-ISSWNCMIGGLAMHGNGEAAIQLFKEMERQR-VAPDDITFL 362

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
           N+L AC+H+ +  ++   YF  M + YGI+P +EH   M+ L+G+ G V  A+++I E+ 
Sbjct: 363 NLLTACAHSGL-VEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMP 421

Query: 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
                 V   LL A     ++++       VI+LE ++   YV+L NLY + G W+ A+ 
Sbjct: 422 VSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAK 481

Query: 494 MRNFMRERGLRKEAGCSWIEVE 515
           +R  M +RG++K  G S IE++
Sbjct: 482 VRKLMDDRGVKKAPGFSMIELQ 503



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 9/234 (3%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +++V   +L A + LG     + +H YI ++G   +  ++TA++  Y K   L  A ++F
Sbjct: 254 DKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVF 313

Query: 62  VEIPQPS--VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
             +P P   + SWN +I G    G    A+ LF E+ER  +  D  +F + L AC   G 
Sbjct: 314 HSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGL 373

Query: 120 LQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
           ++ G    S +++ Y +E  +    C++D+ G+ G V +A  +  EM +  D+    +++
Sbjct: 374 VEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLL 433

Query: 178 AASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
            A  ++ N+EL      R+    PN ++  Y  + N  A  G  EDA  +   M
Sbjct: 434 GACKKHRNIELGEEIGRRVIELEPN-NSGRYVLLANLYANAGKWEDAAKVRKLM 486


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 150/527 (28%), Positives = 270/527 (51%), Gaps = 37/527 (7%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H  +LK+    ++FV+  L+  +     LA A  +F  +P P+V  +NS+I  +  + 
Sbjct: 39  QIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNT 98

Query: 84  KYRK-ALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            +     N F +++++ ++ D +++   L AC    SL L   IH+ + K+     + + 
Sbjct: 99  SHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVP 158

Query: 143 NCLIDMYGKCGS---------------------------------VEDAIGVFGEMIDKD 169
           N LID Y +CGS                                 +E A  +F EM ++D
Sbjct: 159 NSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERD 218

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           ++SWN+++   A+ G ++ AF    R+P  + +S++ ++ G ++ GD++ A ++    P+
Sbjct: 219 MVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPA 278

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            N   W +I+ GY  +  V EA  L+G+M+   +  D+    ++L+  A    L  G  I
Sbjct: 279 KNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRI 338

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS-LCRKNLVTWNAMITGYARNGD 348
           H+ + +        V +A +DMY+KCG ++ A  +F   + +K++V+WN+MI G+A +G 
Sbjct: 339 HASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGH 398

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
             K +ELF ++      +PD+ TF+ +L AC+H  +  ++  +YF SM K YGI P VEH
Sbjct: 399 GEKALELFSRM-VPEGFEPDTYTFVGLLCACTHAGL-VNEGRKYFYSMEKVYGIVPQVEH 456

Query: 409 CCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE 468
              M+ L+G+ G +  A  ++R +      ++   LL+A    +D+D AR    ++ K+E
Sbjct: 457 YGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARAVCEQLFKVE 516

Query: 469 GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
                 Y +L N+Y   G+W   + +R  M   G +K +G S IEVE
Sbjct: 517 PTDPGNYSLLSNIYAQAGDWMNVANVRLQMMNTGGQKPSGASSIEVE 563


>gi|297827241|ref|XP_002881503.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327342|gb|EFH57762.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 669

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 151/506 (29%), Positives = 259/506 (51%), Gaps = 34/506 (6%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV 69
           L    D    +  +Q+H ++++ G  S+VFV   L+ +Y K +++  A K+F E+    V
Sbjct: 139 LSGCDDFWLGSLARQVHGFVIRGGSDSDVFVGNGLITYYTKCDNIESARKVFDEMSDRDV 198

Query: 70  VSWNSLISGYVQSGKYRKALNLF-VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           VSWNS+ISGY QSG +     L+   L  S+   +  +  S L ACGQ   L  GM +H 
Sbjct: 199 VSWNSMISGYSQSGSFEDCKKLYKAMLGCSDFKPNEVTVISVLQACGQSSDLVFGMEVHK 258

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
           K+++  ++  + + N +I  Y KC                               G+L+ 
Sbjct: 259 KMIENHIQMDLSLCNAVIGFYAKC-------------------------------GSLDY 287

Query: 189 AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV 248
           A      +   D+++Y  +I+G    G +++A+ + S M S   S+WN++++G +  N  
Sbjct: 288 ARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAVISGLMQNNHH 347

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
            E ++ F EM       +  T S++L  +   S L  G  IH+  I+ G D +I V +++
Sbjct: 348 EEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGSDNNIYVTTSI 407

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           +D Y+K G +  A  +F +   ++L+ W A+IT YA +GD      LF+Q++ +   +PD
Sbjct: 408 IDNYAKLGFLLGAQRVFDNCKDRSLIVWTAIITAYAVHGDSDSACSLFDQMQCL-GTKPD 466

Query: 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM 428
           +VT   VL+A +H+    DK    F+SM   Y I+P VEH   M+ ++ + G++  A   
Sbjct: 467 NVTLTAVLSAFAHSGDS-DKAQHIFDSMLTKYNIEPGVEHYACMVSVLSRAGKLSNAMEF 525

Query: 429 IRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW 488
           I ++       VW ALL+ +    D+++AR +   + ++E ++   Y ++ NLYT  G W
Sbjct: 526 ISKMPIEPIAKVWGALLNGASVLGDVEIARFACDRLFEMEPENTGNYTIMANLYTQAGRW 585

Query: 489 DVASVMRNFMRERGLRKEAGCSWIEV 514
           + A V+R+ M+  GL+K  G SWIE 
Sbjct: 586 EEAEVVRDKMKRIGLKKIPGTSWIET 611



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 120/244 (49%), Gaps = 13/244 (5%)

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE- 257
           PD    +++I+   +      A+ +   +   N+ S+N++L  Y +R    +A  LF   
Sbjct: 55  PDNFLASKLISFYTRQNRFHQALHVFDEITVRNAFSYNALLIAYTSREMYFDAFSLFLSW 114

Query: 258 -----MQSKDVPMDEYTFSTMLSGIAGLSALTWGML---IHSCVIKQGLDASIVVASALL 309
                  S     D  + S +L  ++G      G L   +H  VI+ G D+ + V + L+
Sbjct: 115 IGSSCYSSGAARPDSISISCVLKALSGCDDFWLGSLARQVHGFVIRGGSDSDVFVGNGLI 174

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
             Y+KC  +E A  +F  +  +++V+WN+MI+GY+++G      +L++ +    D +P+ 
Sbjct: 175 TYYTKCDNIESARKVFDEMSDRDVVSWNSMISGYSQSGSFEDCKKLYKAMLGCSDFKPNE 234

Query: 370 VTFLNVLAACSH-TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM 428
           VT ++VL AC   +D+ F    E  + M +++ I+  +  C ++I    + G +  A+ +
Sbjct: 235 VTVISVLQACGQSSDLVFGM--EVHKKMIENH-IQMDLSLCNAVIGFYAKCGSLDYARAL 291

Query: 429 IREL 432
             E+
Sbjct: 292 FDEM 295



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 119/265 (44%), Gaps = 41/265 (15%)

Query: 1   PNEYVLFHLLRA---SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
           PNE  +  +L+A   SSDL    +  ++H  ++++    ++ +  A++GFY K  SL  A
Sbjct: 232 PNEVTVISVLQACGQSSDL---VFGMEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYA 288

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE--------------------- 96
             +F E+ +   V++ ++ISGY+  G  ++A+ LF E+E                     
Sbjct: 289 RALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAVISGLMQNNHHE 348

Query: 97  ----------RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
                     R     +  + +S L +     +L+ G  IH+  ++   +  + +   +I
Sbjct: 349 EVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGSDNNIYVTTSII 408

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTI 202
           D Y K G +  A  VF    D+ +I W ++I A A +G+ + A     ++      PD +
Sbjct: 409 DNYAKLGFLLGAQRVFDNCKDRSLIVWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDNV 468

Query: 203 SYNEVINGIAQFGDIEDAIMILSSM 227
           +   V++  A  GD + A  I  SM
Sbjct: 469 TLTAVLSAFAHSGDSDKAQHIFDSM 493


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  261 bits (666), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 151/527 (28%), Positives = 268/527 (50%), Gaps = 37/527 (7%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H  +LK+    ++FV+  L+  +     LA A  +F  +P P+V  +NS+I  +  + 
Sbjct: 39  QIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNS 98

Query: 84  KYRK-ALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            +R    N F +++++ ++ D +++   L AC    SL L   IH+ + K      + + 
Sbjct: 99  SHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVP 158

Query: 143 NCLIDMYGKCGS---------------------------------VEDAIGVFGEMIDKD 169
           N LID Y +CG+                                 ++ A  +F EM D+D
Sbjct: 159 NSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRD 218

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           ++SWN+++   A+ G ++ AF    R+P  + +S++ ++ G ++ GD++ A M+    P 
Sbjct: 219 MVSWNTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPV 278

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            N   W +I+ GY  +    EA  L+G+M+   +  D+    ++L+  A    L  G  I
Sbjct: 279 KNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRI 338

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS-LCRKNLVTWNAMITGYARNGD 348
           H+ + +        V +A +DMY+KCG ++ A  +F   + +K++V+WN+MI G+A +G 
Sbjct: 339 HASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGH 398

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
             K +ELF  +      +PD+ TF+ +L AC+H  +  ++  +YF SM K YGI P VEH
Sbjct: 399 GEKALELFSWM-VQEGFEPDTYTFVGLLCACTHAGL-VNEGRKYFYSMEKVYGIVPQVEH 456

Query: 409 CCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE 468
              M+ L+G+ G +  A  ++R +      ++   LL+A    +D+D+AR    ++ KLE
Sbjct: 457 YGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFKLE 516

Query: 469 GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
                 Y +L N+Y   G+W   + +R  M+  G  K +G S IEVE
Sbjct: 517 PSDPGNYSLLSNIYAQAGDWMNVANVRLQMKNTGGEKPSGASSIEVE 563


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  261 bits (666), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 144/500 (28%), Positives = 258/500 (51%), Gaps = 38/500 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H +I+K     + F+ T ++           A+ +F  +  P+   +N++I  Y  +
Sbjct: 31  KKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHN 90

Query: 83  GKYRKALNLFVEL-----ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER 137
             Y  A+ ++ ++       + I+ D ++F   + +C  L    LG  +H  + K+  + 
Sbjct: 91  KVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKS 150

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
             V+ N L++MY KC S++DA  VF EM ++D +SWN++                     
Sbjct: 151 NTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTL--------------------- 189

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
                     I+G  + G +  A  I   M      SW +I++GY       +AL  F  
Sbjct: 190 ----------ISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRR 239

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           MQ   +  DE +  ++L   A L AL  G  IH    K G   +I V +AL++MY+KCG 
Sbjct: 240 MQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGS 299

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           ++    +F  +  +++++W+ MI G A +G   + IELF++++  + ++P+ +TF+ +L+
Sbjct: 300 IDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAK-IEPNIITFVGLLS 358

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           AC+H  +  ++   YFESM +DY I+P VEH   ++ L+G  G + +A  +I+++     
Sbjct: 359 ACAHAGL-LNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPD 417

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497
             +W +LLS+  + S+L++A I+   +++LE      YV+L NLY   G WD  S MR  
Sbjct: 418 SAIWGSLLSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKL 477

Query: 498 MRERGLRKEAGCSWIEVENV 517
           MR + ++K  GCS IEV+N+
Sbjct: 478 MRSKSMKKTPGCSSIEVDNM 497



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 162/351 (46%), Gaps = 58/351 (16%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    ++++ + L      +Q+H ++ K G  SN  V  +L+  Y K +SL DAHK+
Sbjct: 115 PDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKV 174

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEI---------------YADAY 105
           F E+ +   VSWN+LISG+V+ G+ R+A  +F E++   I               YADA 
Sbjct: 175 FEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADAL 234

Query: 106 SF----------------TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
            F                 S L AC QLG+L+LG  IH    K    R + + N LI+MY
Sbjct: 235 EFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMY 294

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYN 205
            KCGS+++   +F +M ++D+ISW+++I   A +G    A      +      P+ I++ 
Sbjct: 295 AKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFV 354

Query: 206 EVINGIAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +++  A  G + + +    SM       P    +  ++       R+ +AL L  +M  
Sbjct: 355 GLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKM-- 412

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
              PM                +  WG L+ SC     L+ +++    LL++
Sbjct: 413 ---PMKP-------------DSAIWGSLLSSCRSHSNLEIAVIAMEHLLEL 447


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  261 bits (666), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 154/537 (28%), Positives = 261/537 (48%), Gaps = 47/537 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGF--YRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H  +L++G   + F ++ ++ F   ++  SL  A  +F +IP P+  + NS+I G  
Sbjct: 5   KQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCT 64

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
               +++AL  + E+    +  D Y+F S   +C        G  IH    K        
Sbjct: 65  DKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGFASDTY 121

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
             N L++MY  CG +  A  VF +M DK ++SW ++I   A+      A     R+   +
Sbjct: 122 AQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSE 181

Query: 201 TISYNEV--INGIAQFGDIEDAIMI----------------------------------- 223
            +  NEV  +N +       D  M+                                   
Sbjct: 182 NVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLA 241

Query: 224 ---LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
                     N  SWN ++ G+V  +   EAL LF EMQ+K +  D+ T +++L     L
Sbjct: 242 RDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHL 301

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
            AL  G  +H+ + KQ +D  + + +AL+DMY+KCG +E A  +F  +  K+++TW A+I
Sbjct: 302 GALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALI 361

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
            G A  G     ++ F+++  ++ ++PD++TF+ VLAACSH     + +S +F SM+  Y
Sbjct: 362 LGLAMCGQAENALQYFDEMH-IKGVKPDAITFVGVLAACSHAGFVDEGIS-HFNSMSDTY 419

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
           GI+PT+EH   ++ ++G+ G +  A+ +I+ +       V   LL A     +L+ A  +
Sbjct: 420 GIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERA 479

Query: 461 AAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           A ++++++      YV+L N+Y S   W+ A   R  M ERG+RK  GCS IEV  V
Sbjct: 480 AKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGV 536



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 157/320 (49%), Gaps = 27/320 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  L ++L A +        +++H YI + GF  +V ++T LM  Y K   +  A  +
Sbjct: 185 PNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDL 244

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +  + ++ SWN +I+G+V+   Y +AL LF E++   I  D  +  S L AC  LG+L
Sbjct: 245 FDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGAL 304

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +H+ I K  ++  V +   L+DMY KCGS+E AI VF EM +KD+++W ++I   
Sbjct: 305 ELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGL 364

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A  G  E A  +   +      PD I++  V+   +  G +++ I   +SM       P 
Sbjct: 365 AMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPT 424

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  ++       R+ EA  L      K +PM    F  +L G+ G           +
Sbjct: 425 IEHYGGLVDILGRAGRIAEAEELI-----KSMPMAPDQF--VLGGLLG-----------A 466

Query: 292 CVIKQGLDASIVVASALLDM 311
           C I   L+A+   A  LL++
Sbjct: 467 CRIHGNLEAAERAAKQLLEI 486


>gi|302754546|ref|XP_002960697.1| hypothetical protein SELMODRAFT_73641 [Selaginella moellendorffii]
 gi|300171636|gb|EFJ38236.1| hypothetical protein SELMODRAFT_73641 [Selaginella moellendorffii]
          Length = 462

 Score =  261 bits (666), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 144/455 (31%), Positives = 253/455 (55%), Gaps = 14/455 (3%)

Query: 47  FYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYS 106
            Y K  S+ADA K+F  + +P VVS  SL+ GY ++G+ ++AL LF +L +     +A +
Sbjct: 1   MYGKCGSMADARKIFDRMQRPDVVSLTSLVLGYAENGEAQEALRLF-QLMKGGCEPNART 59

Query: 107 FTSALAACGQLGSLQLG---MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
           F + L AC  L + +     MAIHS+  +   +    IAN L+D Y KCGS+ D+  VF 
Sbjct: 60  FVAGLKACSSLAAREEAKKTMAIHSRAARAKHDSDNFIANTLVDAYAKCGSLPDSQRVFD 119

Query: 164 EMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP--------DTISYNEVINGIAQFG 215
            +  +D++SW ++I   A + + ++A      L +         D    N +++  A+ G
Sbjct: 120 RISRRDVVSWTALILGHAESDHPQVALELFSGLEDCYVNSLTFWDLFVANSLVDMYAKCG 179

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275
            + D+  +   M   +  SWNS+++GY + ++   AL LF  M+ +    D  TF   L 
Sbjct: 180 SMVDSRRVFDGMRRHDVVSWNSLISGYADNDQGEAALELFVPMELEGCAHDSRTFLASLK 239

Query: 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335
               + AL  G  +H  + + GLD+ +V+A++L+D Y KCG +  A+ +F S+  K++V 
Sbjct: 240 ACGCVGALDIGRTLHGKIRELGLDSDVVIATSLVDFYGKCGSMVDAEQVFSSIVTKDIVA 299

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACSHTDIPFDKVSEYFE 394
           WNA++TGY+R GD   + + F+++   R  ++PD VTFL VL ACSH+ +  ++   YFE
Sbjct: 300 WNALLTGYSRQGDTEALFQAFDRMMASRPRVRPDGVTFLCVLTACSHSGL-VEQGKRYFE 358

Query: 395 SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDL 454
           +M   +G+ P +EH   ++ ++G+   +  A  M++E+   +  V W  +LSA     ++
Sbjct: 359 AMKSIHGLDPGMEHYHCLVDILGRSNRLEEAVAMVKEMPVVANIVSWTTVLSACQKWKNI 418

Query: 455 DVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD 489
           +VA+++   +++L+ +     V++ N+Y S G WD
Sbjct: 419 EVAKVAFDALLELDEEQPAARVLMANIYGSVGMWD 453



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 133/243 (54%), Gaps = 12/243 (4%)

Query: 27  CYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYR 86
           CY+    F  ++FV+ +L+  Y K  S+ D+ ++F  + +  VVSWNSLISGY  + +  
Sbjct: 155 CYVNSLTFW-DLFVANSLVDMYAKCGSMVDSRRVFDGMRRHDVVSWNSLISGYADNDQGE 213

Query: 87  KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
            AL LFV +E      D+ +F ++L ACG +G+L +G  +H KI +  L+  VVIA  L+
Sbjct: 214 AALELFVPMELEGCAHDSRTFLASLKACGCVGALDIGRTLHGKIRELGLDSDVVIATSLV 273

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----P--NPD 200
           D YGKCGS+ DA  VF  ++ KDI++WN+++   +R G+ E  F    R+    P   PD
Sbjct: 274 DFYGKCGSMVDAEQVFSSIVTKDIVAWNALLTGYSRQGDTEALFQAFDRMMASRPRVRPD 333

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPS-----PNSSSWNSILTGYVNRNRVPEALHLF 255
            +++  V+   +  G +E       +M S     P    ++ ++      NR+ EA+ + 
Sbjct: 334 GVTFLCVLTACSHSGLVEQGKRYFEAMKSIHGLDPGMEHYHCLVDILGRSNRLEEAVAMV 393

Query: 256 GEM 258
            EM
Sbjct: 394 KEM 396



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 167/413 (40%), Gaps = 77/413 (18%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQ---LHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
           PN       L+A S L      ++   +H    ++   S+ F++  L+  Y K  SL D+
Sbjct: 55  PNARTFVAGLKACSSLAAREEAKKTMAIHSRAARAKHDSDNFIANTLVDAYAKCGSLPDS 114

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
            ++F  I +  VVSW +LI G+ +S   + AL LF  LE  + Y ++ +F          
Sbjct: 115 QRVFDRISRRDVVSWTALILGHAESDHPQVALELFSGLE--DCYVNSLTFWD-------- 164

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
                                + +AN L+DMY KCGS+ D+  VF  M   D++SWNS+I
Sbjct: 165 ---------------------LFVANSLVDMYAKCGSMVDSRRVFDGMRRHDVVSWNSLI 203

Query: 178 AASARNGNLELAF----------------GFLHRLP-----------------------N 198
           +  A N   E A                  FL  L                        +
Sbjct: 204 SGYADNDQGEAALELFVPMELEGCAHDSRTFLASLKACGCVGALDIGRTLHGKIRELGLD 263

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
            D +    +++   + G + DA  + SS+ + +  +WN++LTGY  +         F  M
Sbjct: 264 SDVVIATSLVDFYGKCGSMVDAEQVFSSIVTKDIVAWNALLTGYSRQGDTEALFQAFDRM 323

Query: 259 QSK--DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-QGLDASIVVASALLDMYSKC 315
            +    V  D  TF  +L+  +    +  G      +    GLD  +     L+D+  + 
Sbjct: 324 MASRPRVRPDGVTFLCVLTACSHSGLVEQGKRYFEAMKSIHGLDPGMEHYHCLVDILGRS 383

Query: 316 GQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
            ++E A +M + +    N+V+W  +++   +  ++      F+ L  + + QP
Sbjct: 384 NRLEEAVAMVKEMPVVANIVSWTTVLSACQKWKNIEVAKVAFDALLELDEEQP 436


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  261 bits (666), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 163/554 (29%), Positives = 281/554 (50%), Gaps = 44/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +LR    +      +++H ++++ G+  ++ V  AL+  Y K   +  A  +
Sbjct: 194 PDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLL 253

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+  ++SWN++ISGY ++G   + L LF  +    +  D  + TS ++AC  LG  
Sbjct: 254 FDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDR 313

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IH+ ++       + + N L  MY   GS  +A  +F  M  KDI+SW ++I+  
Sbjct: 314 RLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGY 373

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGD-------------------- 216
             N   E A      +      PD I+   V++  A  GD                    
Sbjct: 374 EYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYV 433

Query: 217 ---------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                          I+ A+ I  ++P  N  SW SI+ G    NR  EAL  F +M+  
Sbjct: 434 IVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQMKMT 493

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
             P +  T +  L+  A + AL  G  IH+ V++ G+     + +ALLDMY +CG++ IA
Sbjct: 494 LQP-NAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNIA 552

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            + F S  +K++ +WN ++TGY+  G  + V+ELF+++   R ++PD +TF+++L  C  
Sbjct: 553 WNQFNSQ-KKDVSSWNILLTGYSERGQGSVVVELFDRMVKAR-VRPDEITFISLLCGCGK 610

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           + +    +  YF  M ++YG+ P ++H   ++ L+G+ GE+  A + I+++       VW
Sbjct: 611 SQMVRQGLM-YFSKM-EEYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVW 668

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL+A     ++D+  +SA  + +L+  S   Y++LCNLY   G W   + +R  M+E 
Sbjct: 669 GALLNACRIHHNIDLGELSAQRIFELDKGSVGYYILLCNLYADCGKWREVAKVRRMMKEN 728

Query: 502 GLRKEAGCSWIEVE 515
           GL  +AGCSW+EV+
Sbjct: 729 GLTVDAGCSWVEVK 742



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 178/373 (47%), Gaps = 44/373 (11%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE-L 95
           +V +  A +  + +  +L DA  +F ++ + ++ SWN L+ GY + G + +A+ L+   L
Sbjct: 128 SVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRML 187

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
               +  D Y+F   L  CG +  L  G  +H  +V+Y  E  + + N LI MY KCG V
Sbjct: 188 WVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDV 247

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLPNPDTISYNEVINGI 211
           + A  +F  M  +DIISWN++I+    NG     L+L F       +PD ++   VI+  
Sbjct: 248 KSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISAC 307

Query: 212 AQFGDI-----------------------------------EDAIMILSSMPSPNSSSWN 236
              GD                                     +A  + S M   +  SW 
Sbjct: 308 ELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWT 367

Query: 237 SILTGYVNRNRVPE-ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
           ++++GY   N +PE A+  +  M    V  DE T + +LS  A L  L  G+ +H   IK
Sbjct: 368 TMISGY-EYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIK 426

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
             L + ++VA+ L++MYSKC  ++ A  +F ++ RKN+++W ++I G   N    + +  
Sbjct: 427 ARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIF 486

Query: 356 FEQLKTVRDLQPD 368
           F Q+K    LQP+
Sbjct: 487 FRQMKMT--LQPN 497



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 149/345 (43%), Gaps = 41/345 (11%)

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135
           + G   +GK  +A+ L   ++   +  D   F + +  C    + + G  ++S  +    
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMN 125

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
              V + N  + M+ + G++ DA  VFG+M ++++ SWN ++   A+ G  + A    HR
Sbjct: 126 SLSVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHR 185

Query: 196 L-----PNPDTISY-----------------------------------NEVINGIAQFG 215
           +       PD  ++                                   N +I    + G
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCG 245

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275
           D++ A ++   MP  +  SWN++++GY       E L LF  M+   V  D  T ++++S
Sbjct: 246 DVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVIS 305

Query: 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335
               L     G  IH+ VI  G    I V ++L  MY   G    A+ +F  +  K++V+
Sbjct: 306 ACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVS 365

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           W  MI+GY  N    K I+ +  +     ++PD +T   VL+AC+
Sbjct: 366 WTTMISGYEYNFLPEKAIDTYRMMDQ-DSVKPDEITVAAVLSACA 409


>gi|297737195|emb|CBI26396.3| unnamed protein product [Vitis vinifera]
          Length = 667

 Score =  260 bits (665), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 159/553 (28%), Positives = 281/553 (50%), Gaps = 44/553 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +E+    +L+A + L       +LH +IL +GF ++VFV TAL+  Y K      A  +F
Sbjct: 27  SEFTFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFVQTALVDVYSKCCCFHSARLVF 86

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            ++P  S+VSWNS+IS + +     ++  +  +++   +   + +FT  LA+C    SL 
Sbjct: 87  DQMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLASC----SLP 142

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G++IH  I K  L+  + +AN ++ MY +   ++ A+ VF  +  K I+SW  ++    
Sbjct: 143 QGLSIHGYITKLGLDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVSWTIILGGYL 202

Query: 182 RNGNLELAFGFLHRLP----NPDTISY--------------------------------- 204
             G++   F   +++      PD+I +                                 
Sbjct: 203 SAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHSLLLKSGFDHKDP 262

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N ++   A+  D+  A  +  ++   +   W S+++GY       EALHLF  +    
Sbjct: 263 IDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEALHLFNMLLRTA 322

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
              +E T +T+LS  A + +L  G  I   ++  GL + + V ++L+ M+ KCG ++ A 
Sbjct: 323 SRPNELTLATVLSACAEMGSLRMGEEIEQYILLNGLGSDLRVQTSLIHMFCKCGSIKKAQ 382

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           ++F  +  K+L  W+AMI GYA +G   + + LF +++    ++PD++ + +VL ACSH+
Sbjct: 383 ALFERIPNKDLAVWSAMINGYAVHGMGKEALNLFHKMQNEVGIKPDAIVYTSVLLACSHS 442

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  D + +YF SM KD+GI+P+++H   ++ L+G+ G V  A R I+E+       VW 
Sbjct: 443 GLIEDGL-KYFRSMQKDFGIEPSIQHYSCLVDLLGRAGYVELALRTIQEMPVLVQARVWA 501

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
             LSA     +L++   +A  +  LE  S   +V++ NLYTS G W  A+  R+ +  RG
Sbjct: 502 PFLSACYTHHNLELGEFAAKNLFDLEPRSTGNFVLMTNLYTSMGKWKEAAKARSIINARG 561

Query: 503 LRKEAGCSWIEVE 515
           L KE G S IE++
Sbjct: 562 LVKEPGWSQIEID 574



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 176/385 (45%), Gaps = 39/385 (10%)

Query: 98  SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED 157
           S ++   ++F   L AC +L SL+    +HS I+    +  V +   L+D+Y KC     
Sbjct: 22  SGVHGSEFTFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFVQTALVDVYSKCCCFHS 81

Query: 158 AIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR---------------------L 196
           A  VF +M  K ++SWNS+I+A  R+ +++ +FG L +                     L
Sbjct: 82  ARLVFDQMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLASCSL 141

Query: 197 PNPDTIS--------------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGY 242
           P   +I                N +++   +   I+ A+ +  ++   +  SW  IL GY
Sbjct: 142 PQGLSIHGYITKLGLDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVSWTIILGGY 201

Query: 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
           ++   V +   +F +M+ + V  D   F  ++S       L   ML+HS ++K G D   
Sbjct: 202 LSAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHSLLLKSGFDHKD 261

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
            + + L+ MY+KC  +  A  +F ++  K++  W +MI+GYA+ G   + + LF  L   
Sbjct: 262 PIDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEALHLFNMLLRT 321

Query: 363 RDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422
              +P+ +T   VL+AC+  ++   ++ E  E      G+   +    S+I +  + G +
Sbjct: 322 AS-RPNELTLATVLSACA--EMGSLRMGEEIEQYILLNGLGSDLRVQTSLIHMFCKCGSI 378

Query: 423 WRAQRMIRELGFGSYGVVWRALLSA 447
            +AQ +   +       VW A+++ 
Sbjct: 379 KKAQALFERIPNKDLA-VWSAMING 402



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 5/232 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+  V  +L+      G       +H  +LKSGF     +   L+  Y K   L  A ++
Sbjct: 224 PDSIVFVNLISCCKLSGNLLLAMLVHSLLLKSGFDHKDPIDNLLVAMYAKCKDLVSARRV 283

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + + SV  W S+ISGY Q G   +AL+LF  L R+    +  +  + L+AC ++GSL
Sbjct: 284 FDAVHEKSVFLWTSMISGYAQFGYPNEALHLFNMLLRTASRPNELTLATVLSACAEMGSL 343

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           ++G  I   I+   L   + +   LI M+ KCGS++ A  +F  + +KD+  W+++I   
Sbjct: 344 RMGEEIEQYILLNGLGSDLRVQTSLIHMFCKCGSIKKAQALFERIPNKDLAVWSAMINGY 403

Query: 181 ARNGNLELAFGFLHRLPN-----PDTISYNEVINGIAQFGDIEDAIMILSSM 227
           A +G  + A    H++ N     PD I Y  V+   +  G IED +    SM
Sbjct: 404 AVHGMGKEALNLFHKMQNEVGIKPDAIVYTSVLLACSHSGLIEDGLKYFRSM 455


>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 163/557 (29%), Positives = 281/557 (50%), Gaps = 67/557 (12%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFY---------RKI----------------------NS 53
           +HC +LKSG  S   V +AL+ FY         R++                      N 
Sbjct: 160 IHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNV 219

Query: 54  LADAHKMFVEIPQPSVVSWNSLISGYVQSGK-YRKALNLFVELERS-EIYADAYSFTSAL 111
           + DA  +FV++P+  VV+W +LISG+ ++G    KAL +F  + RS E   + ++F   +
Sbjct: 220 MDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVV 279

Query: 112 AACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII 171
            ACG+LG L +G  +H  ++K  LE    I   L++ Y +C +++DA+ V   +++  + 
Sbjct: 280 RACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLN 339

Query: 172 SWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP--- 228
           + NS+I      G +E A    + +   + +SYN +I G A  G ++D+  +   MP   
Sbjct: 340 ALNSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRT 399

Query: 229 -----------------------------SPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                                          +  +WNS+++GY++  +  EAL L+  M 
Sbjct: 400 IFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMH 459

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
              +     TFS +    + L +L  G L+H+ +IK   ++++ V ++L+DMYSKCG + 
Sbjct: 460 RLSIQQTRSTFSALFHACSCLGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIM 519

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A + F S+   N+  W A+I G+A +G  ++ I LF+ +   + L P+  TF+ VL+AC
Sbjct: 520 EAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDXM-IEQGLAPNGATFVGVLSAC 578

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           S   +  ++  + F SM + Y + PT+EH   ++ L+G+ G +  A+  I+++   + GV
Sbjct: 579 SRAGL-VNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGV 637

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           VW ALLSA     DL+V    A ++   +      YV+L N+Y   G W    ++R  +R
Sbjct: 638 VWGALLSACWFWMDLEVGERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILR 697

Query: 500 ERGLRKEAGCSWIEVEN 516
              ++K+ GCSWIE+ N
Sbjct: 698 GFKVKKDPGCSWIELNN 714



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 117/514 (22%), Positives = 213/514 (41%), Gaps = 73/514 (14%)

Query: 9   LLRASSDLGWD-TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP 67
           L++AS    W     ++   Y      LS +  +   +  Y K + L  A ++F ++PQ 
Sbjct: 42  LIKASISKAWKHQRLKEFKLYTAHQSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQR 101

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
           +VVSWN++IS Y + G++ +AL L   + RS +     +F+S L+ C +L  L+ G  IH
Sbjct: 102 TVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIH 161

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
             ++K   E   ++ + L+  Y  C  + +A  VF  ++ ++ + W+ ++        ++
Sbjct: 162 CLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMD 221

Query: 188 LAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
            A     ++P  D +++  +I+G ++ GD                               
Sbjct: 222 DALSVFVKMPRRDVVAWTTLISGFSKNGD------------------------------G 251

Query: 248 VPEALHLFG-EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
             +AL +F   M+S +   +E+TF  ++     L  L+ G  +H  ++K GL+    +  
Sbjct: 252 CGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGG 311

Query: 307 ALLDMYSKC-------------------------------GQVEIADSMFRSLCRKNLVT 335
           AL++ Y +C                               G++E A+ +F  +   N V+
Sbjct: 312 ALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPVS 371

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF-LNVLAACSHTDIPFDKVSEYFE 394
           +N MI GYA  G +     LFE++       P    F  N + +    +   DK  E FE
Sbjct: 372 YNLMIKGYAVGGQMDDSKRLFEKM-------PCRTIFSSNTMISVYSRNGEIDKALELFE 424

Query: 395 SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDL 454
             TK+     T     S     GQ  E  +    +  L        + AL  A      L
Sbjct: 425 E-TKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLGSL 483

Query: 455 DVARISAAEVIKLEGDSD-YVYVMLCNLYTSHGN 487
              ++  A +IK   +S+ YV   L ++Y+  G+
Sbjct: 484 QQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGS 517



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 10/224 (4%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65
           LFH   A S LG     Q LH +++K+ F SNV+V T+L+  Y K  S+ +A   FV I 
Sbjct: 473 LFH---ACSCLGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIF 529

Query: 66  QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA 125
            P+V +W +LI+G+   G   +A++LF  +    +  +  +F   L+AC + G +  GM 
Sbjct: 530 SPNVAAWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMK 589

Query: 126 I-HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARN 183
           I HS    YS+   +    C++D+ G+ G + +A     +M ++ D + W ++++A    
Sbjct: 590 IFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFW 649

Query: 184 GNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMI 223
            +LE+      ++    P P + SY  + N  A  G   + +M+
Sbjct: 650 MDLEVGERVAEKMFSFDPKPIS-SYVILSNIYAGLGRWREKMMV 692


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 160/549 (29%), Positives = 279/549 (50%), Gaps = 64/549 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ ++L   +++ + L      QQLH +   SGFL++  V+++L   Y K + + DA K+
Sbjct: 102 PDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKL 161

Query: 61  FVEIP-----------------------------------QPSVVSWNSLISGYVQSGKY 85
           F  +P                                   +P++VSWN +++G+  +G Y
Sbjct: 162 FDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFY 221

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
            +A+ +F  +     + D  + +  L A G L  + +G  +H  ++K  L     + + +
Sbjct: 222 DEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAM 281

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYN 205
           +DMYGKCG V++   VF E+ + +I S N+ +   +RNG ++ A                
Sbjct: 282 LDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTAL--------------- 326

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
           EV N        +D  M L      N  +W SI+       +  EAL LF +MQ+  V  
Sbjct: 327 EVFN------KFKDQKMEL------NVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEP 374

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           +  T  +++     +SAL  G  IH   +++G+   + V SAL+DMY+KCG++++A   F
Sbjct: 375 NAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCF 434

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
             +   NLV+WNA++ GYA +G   + +E+F  +      +PD VTF  VL+AC+   + 
Sbjct: 435 DKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQ-KPDLVTFTCVLSACAQNGLT 493

Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
            ++    + SM++++GI+P +EH   ++ L+ + G++  A  +I+E+ F     VW ALL
Sbjct: 494 -EEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALL 552

Query: 446 SASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505
           S+    ++L +  I+A ++  LE  +   Y++L N+Y S G WD  + +R  M+ +GLRK
Sbjct: 553 SSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRK 612

Query: 506 EAGCSWIEV 514
             G SWIEV
Sbjct: 613 NPGYSWIEV 621



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/461 (27%), Positives = 214/461 (46%), Gaps = 38/461 (8%)

Query: 6   LFHLLRA--SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH---KM 60
           +FH L    SS     +  +Q H  IL+    S+  ++T+L+ FY    SL+       +
Sbjct: 1   MFHALSQCLSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTL 60

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
              +P P++ S++SLI  + +S  +   L  F  L    +  DA+   SA+ +C  L +L
Sbjct: 61  SSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRAL 120

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H+           ++A+ L  MY KC  + DA  +F  M D+D++ W+++IA  
Sbjct: 121 DPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGY 180

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           +R G +E A                + + G  + G +E           PN  SWN +L 
Sbjct: 181 SRLGLVEEA----------------KELFGEMRSGGVE-----------PNLVSWNGMLA 213

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           G+ N     EA+ +F  M  +    D  T S +L  +  L  +  G  +H  VIKQGL +
Sbjct: 214 GFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGS 273

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
              V SA+LDMY KCG V+    +F  +    + + NA +TG +RNG +   +E+F + K
Sbjct: 274 DKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFK 333

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
             + ++ + VT+ +++A+CS      + + E F  M + YG++P      S+I   G   
Sbjct: 334 D-QKMELNVVTWTSIIASCSQNGKDLEAL-ELFRDM-QAYGVEPNAVTIPSLIPACGNIS 390

Query: 421 EVWRAQRM-IRELGFGSYGVVW--RALLSASGACSDLDVAR 458
            +   + +    L  G +  V+   AL+     C  + +AR
Sbjct: 391 ALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLAR 431


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/516 (29%), Positives = 261/516 (50%), Gaps = 35/516 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDT-YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P+ + +   L+A + L  ++   +++H +IL+ G   ++FV  AL+ FY + + L  A  
Sbjct: 105 PDRFTVTCSLKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARI 164

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF-VELERSEIYADAYSFTSALAACGQLG 118
           MF  +P+   VSWN++++GY Q G Y +   LF V L   E+  +A +  S L AC Q  
Sbjct: 165 MFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSN 224

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            L  G+ +H + V  S                               I  D+  WN+VI 
Sbjct: 225 DLTFGIEVH-RFVNES------------------------------QIKMDVSLWNAVIG 253

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
             A+ G L+ A      +P  D I+Y  +I+G    G +  A+ +      P   +WN++
Sbjct: 254 LYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAV 313

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           ++G V  NR   A+ +F  MQS     +  T +++L   +  S L  G  IH   I+   
Sbjct: 314 ISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTY 373

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
           D +I VA+A++D Y+KCG +  A  +F  +  ++L+ W ++I+ YA +GD    + LF +
Sbjct: 374 DRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYE 433

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           + T   +QPD VTF +VLAAC+H+    D+  + F  +  +YGI+P VEH   M+ ++ +
Sbjct: 434 MLT-NGIQPDQVTFTSVLAACAHSG-ELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSR 491

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G++  A   I ++       VW ALL+ +    D+++ +     + ++E ++   YV++
Sbjct: 492 AGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIM 551

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
            NLY+  G W  A  +R+ M+E  L+K  G SWIE 
Sbjct: 552 ANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIET 587



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 107/193 (55%), Gaps = 5/193 (2%)

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
           PD    +++I+  ++ G I DA  +   +P  N  SWN++   Y   N   + L LF  +
Sbjct: 36  PDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALFISYTLHNMHTDLLKLFSSL 95

Query: 259 ---QSKDVPMDEYTFSTMLSGIAGL-SALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
               S DV  D +T +  L  +A L S       +HS ++++GL+  I V +AL+  YS+
Sbjct: 96  VNSNSTDVKPDRFTVTCSLKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITFYSR 155

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           C ++ +A  MF  +  ++ V+WNAM+ GY++ G   +  ELF  + +  +++P+++T ++
Sbjct: 156 CDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVS 215

Query: 375 VLAACSHT-DIPF 386
           VL AC+ + D+ F
Sbjct: 216 VLQACAQSNDLTF 228



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 99/453 (21%), Positives = 196/453 (43%), Gaps = 60/453 (13%)

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV-IA 178
            ++G  +H+++V  S+     + + LI  Y K GS+ DA  VFG++  K+I SWN++ I+
Sbjct: 19  FRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALFIS 78

Query: 179 ASARNGNLELAFGF------------------------------------------LHRL 196
            +  N + +L   F                                          L R 
Sbjct: 79  YTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAKEVHSFILRRG 138

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
              D    N +I   ++  ++  A ++   MP  ++ SWN++L GY       E   LF 
Sbjct: 139 LEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFR 198

Query: 257 EMQSK-DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
            M S  +V  +  T  ++L   A  + LT+G+ +H  V +  +   + + +A++ +Y+KC
Sbjct: 199 VMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKC 258

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G ++ A  +F  +  K+ +T+ +MI+GY  +G + + ++LF + +     +P   T+  V
Sbjct: 259 GILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQE-----RPRLPTWNAV 313

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ----KGEVWRAQRMIRE 431
           ++     +     V + F +M + +G +P      S++ +       KG        IR 
Sbjct: 314 ISGLVQNNRQEGAV-DIFRAM-QSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRN 371

Query: 432 LGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA 491
             +     V  A++ +   C  L  A++   ++   +G S   +  + + Y  HG+ +VA
Sbjct: 372 T-YDRNIYVATAIIDSYAKCGYLHGAQLVFDQI---KGRSLIAWTSIISAYAVHGDANVA 427

Query: 492 SVMRNFMRERGLRKEAGCSWIEVENVAAHSSNI 524
             +   M   G++ +   ++  V    AHS  +
Sbjct: 428 LSLFYEMLTNGIQPDQ-VTFTSVLAACAHSGEL 459


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 165/553 (29%), Positives = 276/553 (49%), Gaps = 40/553 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N Y     L+   D  +      +H   LKS   ++V+V+ AL+  Y K   + DA ++F
Sbjct: 247 NTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVF 306

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +     VSWN+L+SG VQ+  YR ALN F +++ S    D  S  + +AA G+ G+L 
Sbjct: 307 ASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLL 366

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  +H+  ++  L+  + I N LIDMY KC  V+     F  M +KD+ISW ++IA  A
Sbjct: 367 NGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYA 426

Query: 182 RN-------------------------GNLELA-------------FGFLHRLPNPDTIS 203
           +N                         G++  A              G++ +    D + 
Sbjct: 427 QNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIML 486

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
            N ++N   + G  + A     S+ S +  SW S++T  V+     EAL LF  ++  ++
Sbjct: 487 QNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNI 546

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             D     + LS  A LS+L  G  IH  +I++G      +AS+L+DMY+ CG VE +  
Sbjct: 547 QPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRK 606

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           MF S+ +++L+ W +MI     +G   + I LF+++ T  ++ PD +TFL +L ACSH+ 
Sbjct: 607 MFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKM-TDENVIPDHITFLALLYACSHSG 665

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
           +  +    +FE M   Y ++P  EH   M+ L+ +   +  A + +R +       VW A
Sbjct: 666 LMVEG-KRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCA 724

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           LL A    S+ ++  ++A E+++ +  +   Y ++ N++ + G W+    +R  M+  GL
Sbjct: 725 LLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGL 784

Query: 504 RKEAGCSWIEVEN 516
           +K  GCSWIEV+N
Sbjct: 785 KKNPGCSWIEVDN 797



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 125/399 (31%), Positives = 199/399 (49%), Gaps = 44/399 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           QQLH  +LKS    + F++T L+  Y K  SL DA K+F E+ + ++ +WN+++  +V S
Sbjct: 66  QQLHARLLKSHL--SAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSS 123

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           GKY +A+ L+ E+    +  DA +F S L ACG LG  +LG  IH   VK      V + 
Sbjct: 124 GKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVC 183

Query: 143 NCLIDMYGKCGSVEDAIGVF-GEMIDK-DIISWNSVIAASARNGNLELAFGFLHRLPN-- 198
           N LI MYGKCG +  A  +F G M++K D +SWNS+I+A    G    A     R+    
Sbjct: 184 NALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVG 243

Query: 199 -------------------------------------PDTISYNEVINGIAQFGDIEDAI 221
                                                 D    N +I   A+ G +EDA 
Sbjct: 244 VASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAE 303

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            + +SM   +  SWN++L+G V      +AL+ F +MQ+     D+ +   +++      
Sbjct: 304 RVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSG 363

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  +H+  I+ GLD+++ + + L+DMY+KC  V+     F  +  K+L++W  +I 
Sbjct: 364 NLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIA 423

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           GYA+N    + I LF +++ V+ +  D +   +VL ACS
Sbjct: 424 GYAQNECHLEAINLFRKVQ-VKGMDVDPMMIGSVLRACS 461



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 199/411 (48%), Gaps = 43/411 (10%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF--VEIPQ 66
           +L+A   LG      ++H   +K GF   VFV  AL+  Y K   L  A  +F  + + +
Sbjct: 151 VLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEK 210

Query: 67  PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI 126
              VSWNS+IS +V  GK  +AL+LF  ++   + ++ Y+F +AL        ++LGM I
Sbjct: 211 EDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGI 270

Query: 127 HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNL 186
           H   +K +    V +AN LI MY KCG +EDA  VF  M+ +D +SWN++++   +N   
Sbjct: 271 HGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELY 330

Query: 187 ELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMI------------------- 223
             A  +   + N    PD +S   +I    + G++ +   +                   
Sbjct: 331 RDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTL 390

Query: 224 ----------------LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
                              M   +  SW +I+ GY       EA++LF ++Q K + +D 
Sbjct: 391 IDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDP 450

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
               ++L   +GL +  +   IH  V K+ L A I++ +A++++Y + G  + A   F S
Sbjct: 451 MMIGSVLRACSGLKSRNFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHRDYARRAFES 509

Query: 328 LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           +  K++V+W +MIT    NG   + +ELF  LK   ++QPDS+  ++ L+A
Sbjct: 510 IRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQT-NIQPDSIAIISALSA 559



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 108/235 (45%), Gaps = 6/235 (2%)

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G ++DA+ +   M      +WN+++  +V+  +  EA+ L+ EM+   V +D  TF ++L
Sbjct: 93  GSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVL 152

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC--RKN 332
                L     G  IH   +K G    + V +AL+ MY KCG +  A  +F  +   +++
Sbjct: 153 KACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKED 212

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
            V+WN++I+ +   G   + + LF +++ V  +  ++ TF+  L      D  F K+   
Sbjct: 213 TVSWNSIISAHVTEGKCLEALSLFRRMQEV-GVASNTYTFVAALQGVE--DPSFVKLGMG 269

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
                        V    ++I +  + G +  A+R+   +    Y V W  LLS 
Sbjct: 270 IHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDY-VSWNTLLSG 323



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 19/226 (8%)

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
           E+  S +L     + AL  G  +H+ ++K  L A   +A+ LL MY KCG ++ A  +F 
Sbjct: 46  EHAHSLLLDLCVAVKALPQGQQLHARLLKSHLSA--FLATKLLHMYEKCGSLKDAVKVFD 103

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
            +  + + TWNAM+  +  +G   + IEL+++++ V  +  D+ TF +VL AC    +  
Sbjct: 104 EMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMR-VLGVAIDACTFPSVLKACG--ALGE 160

Query: 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV-WRALL 445
            ++      +    G    V  C ++I + G+ G++  A+ +   +       V W +++
Sbjct: 161 SRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSII 220

Query: 446 SA---SGAC----------SDLDVARISAAEVIKLEGDSDYVYVML 478
           SA    G C           ++ VA  +   V  L+G  D  +V L
Sbjct: 221 SAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKL 266



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 4/204 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +   L A+++L      +++H ++++ GF     ++++L+  Y    ++ ++ KM
Sbjct: 548 PDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKM 607

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + Q  ++ W S+I+     G   +A+ LF ++    +  D  +F + L AC   G +
Sbjct: 608 FHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLM 667

Query: 121 QLGMAIHSKIVK--YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
             G     +I+K  Y LE       C++D+  +  S+E+A      M I      W +++
Sbjct: 668 VEGKRFF-EIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALL 726

Query: 178 AASARNGNLELAFGFLHRLPNPDT 201
            A   + N EL       L   DT
Sbjct: 727 GACHIHSNKELGELAAKELLQSDT 750


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 157/515 (30%), Positives = 274/515 (53%), Gaps = 35/515 (6%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL 95
           ++V V +AL+    +   LA A K+F  + + +VV W  LIS YVQ     +A+ LF++ 
Sbjct: 186 TDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDF 245

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG-- 153
                  D Y+ +S ++AC +LGS++LG+ +HS  ++  L     ++  L+DMY K    
Sbjct: 246 LEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIG 305

Query: 154 -SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE----LAFG-FLHRLPNPDTISYNEV 207
            +++ A  VF  M   D+ISW ++I+   ++G  E      FG  L+    P+ I+Y+ +
Sbjct: 306 QAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSI 365

Query: 208 INGIAQFGDIEDAIMILSSMPSPNSSS----WNSILTGYVNRNRVPEALHLFGEM----- 258
           +   A   D +    + + +   N +S     N++++ Y     + EA  +F ++     
Sbjct: 366 LKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSM 425

Query: 259 -----QSKDVPMDEY-----------TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
                + +D P+D             TF++++S  A +  LT G  +H+  +K G  +  
Sbjct: 426 IPCITEGRDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDR 485

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
            V+++L+ MYS+CG +E A   F  L  +N+++W +MI+G A++G   + + LF  +  +
Sbjct: 486 FVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDM-IL 544

Query: 363 RDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422
             ++P+ VT++ VL+ACSH  +   +  EYF SM +D+G+ P +EH   M+ L+ + G V
Sbjct: 545 TGVKPNDVTYIAVLSACSHVGL-VREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIV 603

Query: 423 WRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482
             A   I E+   +  +VW+ LL A  +  +++V  I+A  V++LE      YV+L NLY
Sbjct: 604 KEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLY 663

Query: 483 TSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
              G WD  + +R+ MR+  L KE G SW+EVEN 
Sbjct: 664 ADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENT 698



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 185/407 (45%), Gaps = 48/407 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKIN---SLADA 57
           P+ Y +  ++ A ++LG      QLH   L+ G  S+  VS  L+  Y K N   ++  A
Sbjct: 252 PDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYA 311

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSG-KYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           +K+F  +P+  V+SW +LISGYVQSG +  K + LF E+    I  +  +++S L +C  
Sbjct: 312 NKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCAS 371

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII----- 171
           +     G  +H+ ++K +      + N L+ MY + G +E+A  VF ++ ++ +I     
Sbjct: 372 ISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCITE 431

Query: 172 --------------------SWNSVIAASARNGNL---------ELAFGFLHRLPNPDTI 202
                               ++ S+I+A+A  G L          L  GF       D  
Sbjct: 432 GRDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGF-----GSDRF 486

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +++  ++ G +EDA    + +   N  SW S+++G         AL LF +M    
Sbjct: 487 VSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTG 546

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           V  ++ T+  +LS  + +  +  G     S     GL   +   + ++D+ ++ G V+ A
Sbjct: 547 VKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEA 606

Query: 322 DSMFRSLCRK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
                 +  K + + W  ++ G  R+ D  +V E+    K V +L+P
Sbjct: 607 LEFINEMPLKADALVWKTLL-GACRSHDNIEVGEI--TAKNVVELEP 650



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 153/310 (49%), Gaps = 48/310 (15%)

Query: 118 GSLQLGMAIHSKIVKYSL-ERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNS 175
           G L+LG A+H ++++  L +R  V+AN L+ +Y +CG+V  A  VF  M   +DI+SW +
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 176 VIAASARN----GNLELAFGFLHR--LPNPDTISY------------------------- 204
           + +  ARN    G+L L    L    LPN  T+                           
Sbjct: 122 MASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKM 181

Query: 205 ----------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
                     + +I+ +A+ GD+  A  +   +       W  +++ YV      EA+ L
Sbjct: 182 GLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEL 241

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F +        D YT S+M+S    L ++  G+ +HS  ++ GL +   V+  L+DMY+K
Sbjct: 242 FLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAK 301

Query: 315 C--GQ-VEIADSMFRSLCRKNLVTWNAMITGYARNG-DLTKVIELFEQLKTVRDLQPDSV 370
              GQ ++ A+ +F  + + ++++W A+I+GY ++G    KV+ LF ++     ++P+ +
Sbjct: 302 SNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLN-ESIKPNHI 360

Query: 371 TFLNVLAACS 380
           T+ ++L +C+
Sbjct: 361 TYSSILKSCA 370



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 157/360 (43%), Gaps = 49/360 (13%)

Query: 23  QQLHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHKMFVEIPQ-PSVVSWNSLISGYV 80
           + LH  +L+   L  +  V+ +L+  Y +  ++A A  +F  +     +VSW ++ S   
Sbjct: 68  RALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLA 127

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL---ER 137
           ++G  R +L L  E+  S +  +AY+  +A  AC     L   +      + + +     
Sbjct: 128 RNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFP-HELYCLVGGVVLGLVHKMGLWGT 186

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA----ASARNGNLELAFGFL 193
            V + + LIDM  + G +  A  VF  +I+K ++ W  +I+           +EL   FL
Sbjct: 187 DVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFL 246

Query: 194 HRLPNPDTISYNEVINGIAQFGDIE----------------DAIM--------------- 222
                PD  + + +I+   + G +                 DA +               
Sbjct: 247 EDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQ 306

Query: 223 -------ILSSMPSPNSSSWNSILTGYVNRN-RVPEALHLFGEMQSKDVPMDEYTFSTML 274
                  +   MP  +  SW ++++GYV    +  + + LFGEM ++ +  +  T+S++L
Sbjct: 307 AMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSIL 366

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
              A +S    G  +H+ VIK    ++  V +AL+ MY++ G +E A  +F  L  ++++
Sbjct: 367 KSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMI 426


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 164/552 (29%), Positives = 273/552 (49%), Gaps = 42/552 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+EY L   ++A   +      + +H  ++  GF S  FV+T+L+G Y K+  + D+ K+
Sbjct: 162 PDEYALSAAIQACIGVDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKV 221

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   + VSWN++ISG+V +G Y +A N F+ +   EI  +   F S   A GQLG +
Sbjct: 222 FNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDV 281

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS--WNSVIA 178
           + G  I+    +  ++  + +   LIDM+ KCG V ++  VF        ++  WN++I+
Sbjct: 282 EKGRYINRIAFEIGMQSNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMIS 341

Query: 179 ASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIE---------------- 218
               +G+ E A     R+       D  +Y   +N IA    +E                
Sbjct: 342 GFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWKSGSIG 401

Query: 219 ----DAIM--------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               +A+M              +  +    N  SW +++T Y   +   +AL +F +M+ 
Sbjct: 402 VSLCNALMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMRE 461

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
                ++ TFS +L+  A L +L +G  +HS   K G      V S L+DMY+KCG V  
Sbjct: 462 MGFQPNQVTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRD 521

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F SL   ++++W AMI+GYA++G     +ELF +++ V    P+S TFL +L ACS
Sbjct: 522 AIKVFESLKDPDVISWTAMISGYAQHGMAKDALELFRKMELVLP-NPNSATFLCLLFACS 580

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H  +  D+   YF  M + YG+ P +EH   ++ ++G+ G +  A + I ++       V
Sbjct: 581 HGGL-VDEGLRYFHLMEERYGLVPEIEHYACVVDILGRVGRLTEAWKFIMKMPIEPDEKV 639

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W  LL A     ++ +A+I+A +V+    D     V+L N Y   GN +    +RN M+ 
Sbjct: 640 WSTLLGACRVHGNIQLAKIAAQKVLSYNPDDFAALVLLSNTYREAGNIEGGLNVRNMMKS 699

Query: 501 RGLRKEAGCSWI 512
           + +RKE G SWI
Sbjct: 700 QAMRKETGMSWI 711



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 201/422 (47%), Gaps = 45/422 (10%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL--SNVFVSTALMGFYRKINSLADAHK 59
           +E  L  L+R S+D       + +H +++K   +  S   +   L+  Y K +    A +
Sbjct: 60  SETSLIELIRESADERCLKKAKSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQ 119

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F EIPQ SV SW  L+ G  ++G YR  ++ FVE+   +I  D Y+ ++A+ AC  + S
Sbjct: 120 VFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIGVDS 179

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           + +G  +H++++         +   L+ MY K G + D+  VF  + +++ +SWN++I+ 
Sbjct: 180 IVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISG 239

Query: 180 SARNGNLELAFG-FLHRLPN---PDTISYNEVINGIAQFGDIEDAIMILS---------- 225
              NG    A+  FL  L     P+   +  V   I Q GD+E    I            
Sbjct: 240 FVSNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSN 299

Query: 226 ---------------------SMPSPNSSS------WNSILTGYVNRNRVPEALHLFGEM 258
                                S+   N S       WN++++G+       EA+ LF  M
Sbjct: 300 IHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRM 359

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
              ++  D YT+ + L+ IA + +L +   +H  + K G    + + +AL+D Y+KCG++
Sbjct: 360 CQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWKSG-SIGVSLCNALMDAYAKCGEL 418

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           +    +F +    N ++W  ++T Y+++ +    + +F Q++ +   QP+ VTF  VLA+
Sbjct: 419 DAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREM-GFQPNQVTFSGVLAS 477

Query: 379 CS 380
           C+
Sbjct: 478 CA 479


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 153/550 (27%), Positives = 286/550 (52%), Gaps = 41/550 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +VL     A S LG+    +Q+H Y  ++   S+  V  AL+  Y K + L  A ++
Sbjct: 236 PDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRL 295

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   ++VSW ++I+GY+Q+    +A+++F +L ++    D ++ TS L +CG L ++
Sbjct: 296 FDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAI 355

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H+ ++K  LE    + N LIDMY KC  + +A  VF  + + D IS+N++I   
Sbjct: 356 WQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGY 415

Query: 181 ARNGNLELAFGFLHRLP----NPDTISY---------------NEVINGI---------- 211
           AR G+L  A     ++      P  +++               ++ I+G+          
Sbjct: 416 ARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDL 475

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     ++F  ++DA ++ S M + +   WN+++ G     R  EA+ LF  ++  
Sbjct: 476 YAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVS 535

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  +E+TF  +++  + L+++  G   H+ +IK G D+   +++AL+DMY+KCG +E  
Sbjct: 536 GLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFIEEG 595

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F S   K+++ WN+MI+ YA++G   + + +F  ++    ++P+ VTF++VL+AC+H
Sbjct: 596 RLLFESTLGKDVICWNSMISTYAQHGHAEEALHVFGMMEGA-GVEPNYVTFVSVLSACAH 654

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  D+   +F SM   Y ++P  EH  S++ L G+ G++  A+  I  +       +W
Sbjct: 655 AGL-VDEGLHHFNSMKTKYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPVATIW 713

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R+LLSA     ++++ R +    +  +       V++ N+Y S G W  A  +R  M   
Sbjct: 714 RSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASKGLWADAQKLRQGMDCA 773

Query: 502 GLRKEAGCSW 511
           G+ KE G SW
Sbjct: 774 GVVKEPGYSW 783



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 195/409 (47%), Gaps = 47/409 (11%)

Query: 26  HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKY 85
           H   + SG L ++F++  L+  Y K+  L DA ++F  +P  ++VSW S IS Y Q G+ 
Sbjct: 53  HARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGRE 112

Query: 86  RKALNLFVELERSEIYA------DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
             AL LF     +   +      + +   SAL AC Q  + + G  +H    K  L+  V
Sbjct: 113 DDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANV 172

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP-- 197
            +   L+++Y K G ++ A+ VF  +  ++ ++W +VI   ++ G   +A     R+   
Sbjct: 173 FVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLD 232

Query: 198 --NPDTISYNEVINGIAQFGDIED-----------------------------------A 220
              PD        +  +  G +E                                    A
Sbjct: 233 GVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLA 292

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             +  SM + N  SW +++ GY+  +   EA+ +F ++       D +  +++L+    L
Sbjct: 293 RRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSL 352

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           +A+  G  +H+ VIK  L++   V +AL+DMY+KC  +  A ++F +L   + +++NAMI
Sbjct: 353 AAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMI 412

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA-ACSHTDIPFDK 388
            GYAR GDLT  +E+F +++    L+P  +TF+++L  + S +D+   K
Sbjct: 413 EGYARLGDLTGAVEIFGKMRYC-SLKPSLLTFVSLLGVSSSRSDLELSK 460



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 196/419 (46%), Gaps = 40/419 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE++L   LRA +      + +Q+H    K G  +NVFV TAL+  Y K   +  A  +
Sbjct: 135 PNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSV 194

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P  + V+W ++I+GY Q+G+   AL LF  +    +  D +   SA +AC  LG +
Sbjct: 195 FDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFV 254

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH    + + E    + N LID+Y KC  +  A  +F  M +++++SW ++IA  
Sbjct: 255 EGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAGY 314

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQF---------------GDIE--- 218
            +N     A     +L      PD  +   ++N                     D+E   
Sbjct: 315 MQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESDE 374

Query: 219 -----------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                            +A  +  ++   ++ S+N+++ GY     +  A+ +FG+M+  
Sbjct: 375 YVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKMRYC 434

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +     TF ++L   +  S L     IH  ++K G    +   SAL+D+YSK   V+ A
Sbjct: 435 SLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDA 494

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             +F  +  +++V WNAMI G A+N    + ++LF +L+ V  L P+  TF+ ++   S
Sbjct: 495 KLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLR-VSGLTPNEFTFVALVTVAS 552


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 159/473 (33%), Positives = 252/473 (53%), Gaps = 32/473 (6%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           T ++    K+  L DA  +    P  +V+SW  LISGY ++G+  +A++ F  +    I 
Sbjct: 175 TTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIE 234

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            D  +    L+AC QL  L  G ++H  + +  +     +   LIDMY KCG +  A  V
Sbjct: 235 PDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEV 294

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F                A  R            R P     S+N +I+G  + G ++ A 
Sbjct: 295 FD---------------ALGRG-----------RRPQ----SWNAMIDGYCKLGHVDVAR 324

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   M   +  ++NS++TGY++  R+ EAL LF +M+  D+  D +T  ++L+  A L 
Sbjct: 325 YLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLG 384

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL  G  +H+C+ ++ ++  I + +ALLDMY KCG+VE A  +F+++  +++ TW+AMI 
Sbjct: 385 ALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIA 444

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G A NG     +E F  +K V   QP+SVT++ +L ACSH+ +  D+   YFE M   + 
Sbjct: 445 GLAFNGMGKAALEYFFWMK-VDGFQPNSVTYIAILTACSHSCL-LDEGRLYFEEMRLLHN 502

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I+P +EH   MI L+G+ G +  A  ++R +      V+W ++LSA     D ++AR +A
Sbjct: 503 IRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAA 562

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
             ++KLE D D VYV L N+Y     W+ AS +R  M ERG++K AG S I V
Sbjct: 563 EHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITV 615



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 158/355 (44%), Gaps = 66/355 (18%)

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ-LG 118
           +F  +P  + +   +L + +  S      L L+  + R+ +  DA++F      C +   
Sbjct: 59  LFDRMPCSTFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRA 118

Query: 119 SLQLGMAIHSKIVKYSLERGV-VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
            + L   +H+   +  L   V +++N +I MY + G   DA   F ++  KD ++W +V 
Sbjct: 119 HVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTV- 177

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
                                         I+G+A+ G ++DA  +L   P+ N  SW  
Sbjct: 178 ------------------------------ISGLAKLGLLDDAWCLLRHSPARNVISWTG 207

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           +++GY    R  EA+  F  M S  +  DE T   +LS  A L  L +G  +H  V ++G
Sbjct: 208 LISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKG 267

Query: 298 LDASIVVASALLDMYSKC--------------------------------GQVEIADSMF 325
           +  S  +  AL+DMY+KC                                G V++A  +F
Sbjct: 268 MLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLF 327

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             +  ++LVT+N++ITGY   G L + + LF Q++   DL+ D+ T +++L AC+
Sbjct: 328 DQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRR-HDLRADNFTMVSLLTACA 381



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 144/314 (45%), Gaps = 73/314 (23%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKI--------- 51
           P+E  +  LL A + L    + + LH  + + G L +  +  AL+  Y K          
Sbjct: 235 PDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEV 294

Query: 52  -------------NSLAD----------AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKA 88
                        N++ D          A  +F ++    +V++NSLI+GY+  G+ R+A
Sbjct: 295 FDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREA 354

Query: 89  LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
           L LF+++ R ++ AD ++  S L AC  LG+L  G A+H+ I +  +E  + +   L+DM
Sbjct: 355 LLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDM 414

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISY 204
           Y KCG VE+A  VF  M  +D+ +W+++IA  A NG  + A  +   +      P++++Y
Sbjct: 415 YLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTY 474

Query: 205 NEV------------------------------------INGIAQFGDIEDAIMILSSMP 228
             +                                    I+ + + G +++A+ ++ +MP
Sbjct: 475 IAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMP 534

Query: 229 -SPNSSSWNSILTG 241
             PN+  W SIL+ 
Sbjct: 535 MQPNAVIWASILSA 548



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 106/232 (45%), Gaps = 7/232 (3%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + + +  LL A + LG     + LH  I +     ++++ TAL+  Y K   + +A  +F
Sbjct: 369 DNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVF 428

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +    V +W+++I+G   +G  + AL  F  ++      ++ ++ + L AC     L 
Sbjct: 429 QAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLD 488

Query: 122 LGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
            G     ++ + +++   +    C+ID+ G+ G +++A+ +   M +  + + W S+++A
Sbjct: 489 EGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSA 548

Query: 180 SARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
              + +  LA      L    P+ D + Y ++ N        EDA  I   M
Sbjct: 549 CRVHKDANLARNAAEHLLKLEPDEDAV-YVQLYNIYIDSRQWEDASQIRRLM 599


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 248/478 (51%), Gaps = 35/478 (7%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV  S +++  + K  ++ +A K+F E+ Q  +VSW++LIS Y Q+  Y +AL LF E+ 
Sbjct: 222 NVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMN 281

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
            + I  D     S L+AC +L  +  G  +H  +VK  +E  V + N LI MY  C  V 
Sbjct: 282 ANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVV 341

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
            A  +F E    D ISWNS+                               I+G  + G+
Sbjct: 342 TAQKLFSESCCLDQISWNSM-------------------------------ISGYVKCGE 370

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           IE A  +  SMP  ++ SW+++++GY  ++R  E L LF EMQ +    DE    +++S 
Sbjct: 371 IEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISA 430

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
              L+AL  G  IH+ + K GL  +I++ + L++MY K G VE A  +F+ L  K + TW
Sbjct: 431 CTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTW 490

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           NA+I G A NG + K ++ F ++K    + P+ +TF+ VL AC H  +  D+   +F SM
Sbjct: 491 NALILGLAMNGLVDKSLKTFSEMKE-HGVTPNEITFVAVLGACRHMGL-VDEGHRHFNSM 548

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
            +++ I P ++H   M+ L+G+ G +  A+ +I  +        W ALL A     D + 
Sbjct: 549 IQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNET 608

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW-DVASVMRNFMRERGLRKEAGCSWIE 513
                 ++++L  D D   V+L N+Y S GNW DV  V R  MR+ G+ K  GCS IE
Sbjct: 609 GERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEV-RGMMRQHGVVKTPGCSMIE 665



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 220/455 (48%), Gaps = 37/455 (8%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKIN--SLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           Q+   ++ SGF  + F ++ L+ F  ++   ++  ++++F  I  P+    N+++ GY+Q
Sbjct: 44  QILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGFICNTMMKGYMQ 103

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
                KA+ ++  +  S + AD Y++     +C    +   G  I   ++K   +  V I
Sbjct: 104 RNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYI 163

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
            N LI+MY  CG++ DA  VF      D++SWNS++A     GN+E A     R+P  + 
Sbjct: 164 QNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNV 223

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           I+ N +I    + G++E+A  + + M   +  SW+++++ Y       EAL LF EM + 
Sbjct: 224 IASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNAN 283

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            + +DE    ++LS  + L  +  G L+H  V+K G++  + + +AL+ MYS C +V  A
Sbjct: 284 GIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTA 343

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE------------------------ 357
             +F   C  + ++WN+MI+GY + G++ K   LF+                        
Sbjct: 344 QKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFT 403

Query: 358 ------QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411
                 Q   +   +PD    ++V++AC+H     D+  ++  +  +  G+K  +    +
Sbjct: 404 ETLVLFQEMQIEGTKPDETILVSVISACTHL-AALDQ-GKWIHAYIRKNGLKINIILGTT 461

Query: 412 MIRLMGQKGEVWRAQRMIRELGFGSYGV-VWRALL 445
           +I +  + G V  A  + +  G    GV  W AL+
Sbjct: 462 LINMYMKLGCVEDALEVFK--GLEEKGVSTWNALI 494



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 109/215 (50%), Gaps = 4/215 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E +L  ++ A + L      + +H YI K+G   N+ + T L+  Y K+  + DA ++
Sbjct: 419 PDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEV 478

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  V +WN+LI G   +G   K+L  F E++   +  +  +F + L AC  +G +
Sbjct: 479 FKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLV 538

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G    +S I ++ +   +    C++D+ G+ G +++A  +   M +  D+ +W +++ 
Sbjct: 539 DEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLG 598

Query: 179 ASARNGNLELAFGFLHRLP--NPDTISYNEVINGI 211
           A  + G+ E       +L   +PD   +N +++ I
Sbjct: 599 ACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNI 633



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 43/233 (18%)

Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
           F +I  +  I S + +PN    N+++ GY+ RN   +A+ ++  M   +V  D YT+  +
Sbjct: 73  FININQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPIL 132

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
               +   A   G  I   V+K G D+ + + + L++MY+ CG +  A  +F      ++
Sbjct: 133 FQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDM 192

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393
           V+WN+M+ GY   G++       E+ K V D  P+     NV+A+ S             
Sbjct: 193 VSWNSMLAGYVLVGNV-------EEAKDVYDRMPER----NVIASNS------------- 228

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
                             MI L G+KG V  A ++  E+      V W AL+S
Sbjct: 229 ------------------MIVLFGKKGNVEEACKLFNEMKQKDL-VSWSALIS 262


>gi|347954474|gb|AEP33737.1| chlororespiratory reduction 21 [Nasturtium officinale]
          Length = 826

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 148/524 (28%), Positives = 279/524 (53%), Gaps = 11/524 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +   L AS+++      +Q H   + +G   +  + T+ + FY K+  +  A  +
Sbjct: 270 PTRVTVSTCLSASANMDGIEEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEMI 329

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  VV+WN LISGYVQ G    A+++   +    +  D  + ++ ++A  +  +L
Sbjct: 330 FDRMIEKDVVTWNLLISGYVQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAAARTQNL 389

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +    +++S    +V+A+  +DMY  CGS+ DA  VF  ++ KD+I WN++++  
Sbjct: 390 KLGKEVQCYCIRHSFASDIVLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWNTLLSVY 449

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PNS 232
           A +G    AF   + +      P+ I++N +I    + G + +A  I S M S    PN 
Sbjct: 450 AESGLSGEAFRLFYEMQLESVPPNAITWNLIILSFLRNGQVNEAKEIFSQMQSSGIFPNL 509

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
            SW +++ G V      EA+    +MQ   +  + ++ +  LS  + L++L +G  +H  
Sbjct: 510 VSWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACSNLASLHFGRSVHGY 569

Query: 293 VIK-QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
           +I+ Q   +S+++ ++L+DMY+KCG +  A+ +FRS    +L  +NAMI+ YA NG++ +
Sbjct: 570 IIRNQQHSSSVLIETSLVDMYAKCGDINKAEMVFRSKLCSDLPLYNAMISAYALNGNVKE 629

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411
            I L  +L+    ++PD++TF ++L+AC+H      +  E F  M   +GIKP +EH   
Sbjct: 630 AIALCRRLEDT-GIKPDNITFTSLLSACNHAG-DVSQAVEIFTDMVSKHGIKPCLEHYGL 687

Query: 412 MIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471
           M+ ++   GE  +A R+I E+ + S   + ++L+++       ++    +  +++ E ++
Sbjct: 688 MVDILASAGETDKALRLIEEMPYKSDARMIQSLVASCNMKHKTELMDFLSRHLLETEPEN 747

Query: 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
              YV + N Y   G+WD     R  M+ + L+K  GCSWI ++
Sbjct: 748 SGNYVTISNAYAVEGSWDEVVKTREMMKAKRLKKSPGCSWIRIK 791



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 136/518 (26%), Positives = 247/518 (47%), Gaps = 49/518 (9%)

Query: 23  QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H  ILK+G  +  N ++ T L+ FY K ++   +  +F ++   +V SW ++I    
Sbjct: 88  KQIHARILKNGDFYAKNEYIETKLVIFYAKCDAFEASEVLFSKLRVRNVYSWAAIIGVKC 147

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + G   +AL  FVE+ ++EI+ D +   +   ACG L   + G  +H  +VK  L   V 
Sbjct: 148 RIGLCEEALMGFVEMLQNEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKSGLHDCVF 207

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
           +A+ L DMYGKCG ++DA  VF E+ ++++++WN+++    +NG  E A   L  +    
Sbjct: 208 VASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEG 267

Query: 197 ---------------PNPDTISYNE------VINGI--------------AQFGDIEDAI 221
                           N D I   +      ++NG+               + G IE A 
Sbjct: 268 IEPTRVTVSTCLSASANMDGIEEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAE 327

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           MI   M   +  +WN +++GYV +  V +A+H+   M+ +++  D  T ST++S  A   
Sbjct: 328 MIFDRMIEKDVVTWNLLISGYVQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAAARTQ 387

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  +    I+    + IV+AS  +DMY+ CG +  A  +F S+  K+L+ WN +++
Sbjct: 388 NLKLGKEVQCYCIRHSFASDIVLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWNTLLS 447

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            YA +G   +   LF +++ +  + P+++T+ N++      +   ++  E F  M +  G
Sbjct: 448 VYAESGLSGEAFRLFYEMQ-LESVPPNAITW-NLIILSFLRNGQVNEAKEIFSQM-QSSG 504

Query: 402 IKPTVEHCCSMIRLMGQKG---EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           I P +    +M+  + Q G   E     R ++E G           LSA    + L   R
Sbjct: 505 IFPNLVSWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACSNLASLHFGR 564

Query: 459 ISAAEVIKLEGDSDYVYV--MLCNLYTSHGNWDVASVM 494
                +I+ +  S  V +   L ++Y   G+ + A ++
Sbjct: 565 SVHGYIIRNQQHSSSVLIETSLVDMYAKCGDINKAEMV 602



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/474 (24%), Positives = 211/474 (44%), Gaps = 82/474 (17%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +V+ ++ +A   L W  + + +H Y++KSG    VFV+++L   Y K   L DA K+
Sbjct: 169 PDNFVVPNVCKACGALQWSRFGRGVHGYVVKSGLHDCVFVASSLADMYGKCGVLDDARKV 228

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EIP+ +VV+WN+L+ GYVQ+G   +A+ L  ++ +  I     + ++ L+A   +  +
Sbjct: 229 FDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMDGI 288

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G   H+  +   LE   ++    ++ Y K G +E A  +F  MI+KD+++WN +I+  
Sbjct: 289 EEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISGY 348

Query: 181 ARNGNLELAFGF--LHRLPN-------------------------------------PDT 201
            + G +E A     L RL N                                      D 
Sbjct: 349 VQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFASDI 408

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           +  +  ++  A  G I DA  +  S+ + +   WN++L+ Y       EA  LF EMQ +
Sbjct: 409 VLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWNTLLSVYAESGLSGEAFRLFYEMQLE 468

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            VP +               A+TW ++I S                    + + GQV  A
Sbjct: 469 SVPPN---------------AITWNLIILS--------------------FLRNGQVNEA 493

Query: 322 DSMFRSLCRK----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
             +F  +       NLV+W  M+ G  +NG   + I    +++    L+P++ +    L+
Sbjct: 494 KEIFSQMQSSGIFPNLVSWTTMMNGLVQNGCSEEAILFLRKMQE-SGLRPNAFSITVALS 552

Query: 378 ACSH-TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
           ACS+   + F +    +    + +     +E   S++ +  + G++ +A+ + R
Sbjct: 553 ACSNLASLHFGRSVHGYIIRNQQHSSSVLIE--TSLVDMYAKCGDINKAEMVFR 604



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 160/357 (44%), Gaps = 42/357 (11%)

Query: 67  PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI 126
           PS  S+   +S   +SG+ R+AL+L  E++  ++      +   L  C     L  G  I
Sbjct: 31  PSSASYFHRVSSLSKSGEIREALSLLTEMDFRKLRIGPEIYGEILQGCVYERDLCTGKQI 90

Query: 127 HSKIVKYS--LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
           H++I+K      +   I   L+  Y KC + E +  +F ++  +++ SW ++I    R G
Sbjct: 91  HARILKNGDFYAKNEYIETKLVIFYAKCDAFEASEVLFSKLRVRNVYSWAAIIGVKCRIG 150

Query: 185 NLELAF-GFLHRLPN---PDTISYNEVINGI-----AQFGD------------------- 216
             E A  GF+  L N   PD      V         ++FG                    
Sbjct: 151 LCEEALMGFVEMLQNEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKSGLHDCVFVAS 210

Query: 217 -----------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
                      ++DA  +   +P  N  +WN+++ GYV      EA+ L  +M+ + +  
Sbjct: 211 SLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEP 270

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
              T ST LS  A +  +  G   H+  I  GL+   ++ ++ L+ Y K G +E A+ +F
Sbjct: 271 TRVTVSTCLSASANMDGIEEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEMIF 330

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
             +  K++VTWN +I+GY + G +   I +  QL  + +L+ D VT   +++A + T
Sbjct: 331 DRMIEKDVVTWNLLISGYVQQGLVEDAIHMC-QLMRLENLKYDCVTLSTLMSAAART 386



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 96/219 (43%), Gaps = 6/219 (2%)

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
           SP+S+S+   ++       + EAL L  EM  + + +    +  +L G      L  G  
Sbjct: 30  SPSSASYFHRVSSLSKSGEIREALSLLTEMDFRKLRIGPEIYGEILQGCVYERDLCTGKQ 89

Query: 289 IHSCVIKQG--LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
           IH+ ++K G     +  + + L+  Y+KC   E ++ +F  L  +N+ +W A+I    R 
Sbjct: 90  IHARILKNGDFYAKNEYIETKLVIFYAKCDAFEASEVLFSKLRVRNVYSWAAIIGVKCRI 149

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           G   + +  F ++    ++ PD+    NV  AC    + + +            G+   V
Sbjct: 150 GLCEEALMGFVEMLQ-NEIFPDNFVVPNVCKACGA--LQWSRFGRGVHGYVVKSGLHDCV 206

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
               S+  + G+ G +  A+++  E+   +  V W AL+
Sbjct: 207 FVASSLADMYGKCGVLDDARKVFDEIPERNV-VAWNALM 244


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/513 (30%), Positives = 263/513 (51%), Gaps = 33/513 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      +L+A + +      +Q+H +I K G LS++FVS +L+  Y    +L  A  +
Sbjct: 85  PDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSV 144

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+    VVSWNSLI GY Q  +++  L LF  ++   + AD  +    ++AC +LG  
Sbjct: 145 FDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDY 204

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +   +   I  Y +E  V + N L+D +G+ G ++ A  VF  M  ++I++ N++IAA 
Sbjct: 205 SMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAY 264

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           A+                                 DI  A  I   +P  +  SW+S+++
Sbjct: 265 AKGQ-------------------------------DIVSARKIFDQIPKKDLISWSSMIS 293

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GY   N   +AL +F +MQ   V  D    ++++S  A L AL  G  +H  V +  + A
Sbjct: 294 GYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKA 353

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
             ++ ++L+DMY KCG  + A  +F+ +  K+ ++WN++I G A NG   + + LF+ + 
Sbjct: 354 DTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAML 413

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
           T    +P+ VTFL VL AC++  +  ++  ++FESM + Y ++P ++H   ++ L+G+ G
Sbjct: 414 T-EGFRPNGVTFLGVLIACANAKL-VEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAG 471

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
           ++ +A R I E+      VVWR LL +     D+ +A I   ++ +LE  +   Y +L N
Sbjct: 472 QLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSN 531

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
            Y S   W  A  +R  M +  +RK  GCS +E
Sbjct: 532 AYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 564



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 127/243 (52%), Gaps = 4/243 (1%)

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275
           D+  A  +   + +P +  WN ++ G    +   +A+  + + Q   +  D  TF  +L 
Sbjct: 36  DLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILK 95

Query: 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335
             A ++AL  G  +H+ + K GL + I V+++L+ +Y+ CG +  A S+F  +  K++V+
Sbjct: 96  ACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVS 155

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFES 395
           WN++I GY++      ++ LF+ ++    ++ D VT + V++AC  T +    +++Y   
Sbjct: 156 WNSLICGYSQCNRFKDILALFKLMQN-EGVKADKVTMIKVVSAC--TRLGDYSMADYMVR 212

Query: 396 MTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLD 455
             +DY I+  V    +++   G++G++  A+++   +   +  V   A+++A     D+ 
Sbjct: 213 YIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNI-VTMNAMIAAYAKGQDIV 271

Query: 456 VAR 458
            AR
Sbjct: 272 SAR 274


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 176/616 (28%), Positives = 294/616 (47%), Gaps = 109/616 (17%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + L H+L+A  +L         H  I  +GF SNVF+  AL+  Y +  SL +A  +
Sbjct: 153 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 212

Query: 61  FVEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVEL----------ERSEIYADAYSF 107
           F EI Q     V+SWNS++S +V+S     AL+LF ++          ERS+I     S 
Sbjct: 213 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII----SI 268

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-- 165
            + L ACG L ++     +H   ++      V + N LID Y KCG +E+A+ VF  M  
Sbjct: 269 VNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEF 328

Query: 166 ---------------------------------IDKDIISWNSVIAASARNG------NL 186
                                            I  D+++W +VIA  ++ G      NL
Sbjct: 329 KDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNL 388

Query: 187 ELAFGFLHRLPN-------------------------------------------PDTIS 203
                F   LPN                                            D + 
Sbjct: 389 FRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMV 448

Query: 204 YNEVINGIAQFGDIEDAIMILSSMP--SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           YN +I+  ++    + A  I   +P    N  +W  ++ G+       +AL LF EM S+
Sbjct: 449 YNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISE 508

Query: 262 D--VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL--DASIVVASALLDMYSKCGQ 317
              V  + YT S +L   A L+A+  G  IH+ V++      ++  VA+ L+DMYSKCG 
Sbjct: 509 PYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGD 568

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           V+ A  +F S+ +K+ ++W +M+TGY  +G  ++ +++F++++      PD +TFL VL 
Sbjct: 569 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKA-GFVPDDITFLVVLY 627

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           ACSH  +  D+   YF+SM+ DYG+ P  EH    I L+ + G + +A R ++++     
Sbjct: 628 ACSHCGM-VDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPT 686

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497
            VVW ALLSA    S++++A  +  +++++  ++D  Y ++ N+Y + G W   + +R+ 
Sbjct: 687 AVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHL 746

Query: 498 MRERGLRKEAGCSWIE 513
           M++ G++K  GCSW++
Sbjct: 747 MKKSGIKKRPGCSWVQ 762



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 184/413 (44%), Gaps = 97/413 (23%)

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
           P P+V  WN LI  +++ G+   A+N+   + R+    D ++    L ACG+L S + G 
Sbjct: 117 PSPAVW-WNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGS 175

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK---DIISWNSVIAASA 181
           A H  I     E  V I N L+ MY +CGS+E+A  +F E+  +   D+ISWNS+++A  
Sbjct: 176 AFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHV 235

Query: 182 RNGN----LEL---------------------------AFGFLHRLPN------------ 198
           ++ N    L+L                           A G L  +P             
Sbjct: 236 KSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG 295

Query: 199 --PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
             PD    N +I+  A+ G +E+A+ + + M   +  SWN+++ GY        A  LF 
Sbjct: 296 TFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFK 355

Query: 257 EMQSKDVPMDEYTFS-----------------------------------TMLSGIAGLS 281
            M+ +++P+D  T++                                   ++LS  A L 
Sbjct: 356 NMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLG 415

Query: 282 ALTWGMLIHSCVIKQ----------GLDASIVVASALLDMYSKCGQVEIADSMFR--SLC 329
           A + G  IH+  +K           G D  ++V +AL+DMYSKC   + A S+F    L 
Sbjct: 416 AFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLE 475

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVLAACSH 381
            +N+VTW  MI G+A+ GD    ++LF E +     + P++ T   +L AC+H
Sbjct: 476 ERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAH 528


>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 154/516 (29%), Positives = 262/516 (50%), Gaps = 35/516 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDT-YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P+ + +   L+A + L  ++   +++H +IL+ G   ++FV  AL+ FY + + L  A  
Sbjct: 105 PDRFTVTCALKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARI 164

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF-VELERSEIYADAYSFTSALAACGQLG 118
           MF  +P+  +VSWN++++GY Q G Y K   LF V L   E+  +A +  S L AC Q  
Sbjct: 165 MFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQSN 224

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            L  G+ +H + V  S                               I  D+  WN+VI 
Sbjct: 225 DLIFGIEVH-RFVNES------------------------------QIKMDVSLWNAVIG 253

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
             A+ G+L+ A      +   D I+Y  +I+G    G +  A+ +      P   +WN++
Sbjct: 254 LYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAV 313

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           ++G V  NR   A+ +F  MQS     +  T +++L   +  S L  G  IH   I+   
Sbjct: 314 ISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTY 373

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
           D +I VA+A++D Y+KCG +  A  +F  +  ++L+ W ++I+ YA +GD    + LF +
Sbjct: 374 DRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYE 433

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           + T   +QPD VTF +VLAAC+H+    D+  + F  +  +YGI+P VEH   M+ ++ +
Sbjct: 434 MLT-NGIQPDQVTFTSVLAACAHSG-ELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSR 491

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G++  A   I ++       VW ALL+ +    D+++ +     + ++E ++   YV++
Sbjct: 492 AGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIM 551

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
            NLY+  G W  A  +R+ M+E  L+K  G SWIE 
Sbjct: 552 ANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIET 587



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 128/239 (53%), Gaps = 8/239 (3%)

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
           PD    +++I+  ++ G I DA  +   +P  N  SWN++L  Y   N   + L LF  +
Sbjct: 36  PDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALLISYTLHNMHTDLLKLFSSL 95

Query: 259 ---QSKDVPMDEYTFSTMLSGIAGL-SALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
               S DV  D +T +  L  +A L S       +HS ++++GL+  I V +AL+  YS+
Sbjct: 96  VNSNSTDVKPDRFTVTCALKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITFYSR 155

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           C ++ +A  MF  +  +++V+WNAM+ GY++ G   K  ELF  + +  +++P+++T ++
Sbjct: 156 CDELVLARIMFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVMLSSLEVKPNALTAVS 215

Query: 375 VLAACSHT-DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
           VL AC+ + D+ F      F + ++   IK  V    ++I L  + G +  A+ +  E+
Sbjct: 216 VLQACAQSNDLIFGIEVHRFVNESQ---IKMDVSLWNAVIGLYAKCGSLDYARELFEEM 271



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  +H+ ++   +     + S L+  YSK G +  A ++F  + RKN+ +WNA++  Y  
Sbjct: 22  GKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALLISYTL 81

Query: 346 NGDLTKVIELFEQL--KTVRDLQPDSVTFLNVLAACS 380
           +   T +++LF  L      D++PD  T    L A +
Sbjct: 82  HNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALA 118


>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Glycine max]
          Length = 534

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 147/493 (29%), Positives = 261/493 (52%), Gaps = 34/493 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGF-YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           Q++H +I+K+G   +   ++ ++ F       +  A+ +F  IP P++  WN++I G+ +
Sbjct: 42  QKIHAHIIKTGLAHHTVAASRVLTFCASSSGDINYAYLLFTTIPSPNLYCWNTIIRGFSR 101

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           S     A++LFV++  S +     ++ S   A  QLG+   G  +H ++VK  LE+   I
Sbjct: 102 SSTPHLAISLFVDMLCSSVLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEKDQFI 161

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
            N +I MY   G + +A  VF E++D D+++ NS+I                        
Sbjct: 162 QNTIIYMYANSGLLSEARRVFDELVDLDVVACNSMIM----------------------- 198

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                   G+A+ G+++ +  +  +MP+    +WNS+++GYV   R+ EAL LF +MQ +
Sbjct: 199 --------GLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQGE 250

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V   E+T  ++LS  A L AL  G  +H  V +   + +++V +A++DMY KCG +  A
Sbjct: 251 RVEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKA 310

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F +   + L  WN++I G A NG   K IE F +L+   DL+PD V+F+ VL AC +
Sbjct: 311 IEVFEASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEA-SDLKPDHVSFIGVLTACKY 369

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
                 K  +YF  M   Y I+P+++H   M+ ++GQ   +  A+++I+ +   +  ++W
Sbjct: 370 IG-AVGKARDYFSLMMNKYEIEPSIKHYTCMVEVLGQAALLEEAEQLIKGMPLKADFIIW 428

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            +LLS+     ++++A+ +A  V +L       Y+++ N+  +   ++ A   R  MRER
Sbjct: 429 GSLLSSCRKHGNVEIAKRAAQRVCELNPSDASGYLLMSNVQAASNQFEEAMEQRILMRER 488

Query: 502 GLRKEAGCSWIEV 514
              KE GCS IE+
Sbjct: 489 LAEKEPGCSSIEL 501



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 102/191 (53%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+ +  LL A + LG   + + +H Y+ +  F  NV V TA++  Y K   +  A ++
Sbjct: 254 PSEFTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEV 313

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F   P   +  WNS+I G   +G  RKA+  F +LE S++  D  SF   L AC  +G++
Sbjct: 314 FEASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPDHVSFIGVLTACKYIGAV 373

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
                  S ++ KY +E  +    C++++ G+   +E+A  +   M +  D I W S+++
Sbjct: 374 GKARDYFSLMMNKYEIEPSIKHYTCMVEVLGQAALLEEAEQLIKGMPLKADFIIWGSLLS 433

Query: 179 ASARNGNLELA 189
           +  ++GN+E+A
Sbjct: 434 SCRKHGNVEIA 444


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 155/516 (30%), Positives = 275/516 (53%), Gaps = 37/516 (7%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL 95
           +++ V +AL+    +   LA A K+F  + + +VV W  LIS YVQ     +A+ +F++ 
Sbjct: 186 TDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDF 245

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
                  D Y+ +S ++AC +LGS++LG+ +HS  ++        ++  L+DMY K  ++
Sbjct: 246 LEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAK-SNI 304

Query: 156 EDAIG----VFGEMIDKDIISWNSVIAASARNGNLE----LAFG-FLHRLPNPDTISYNE 206
           E A+     VF  M   D+ISW ++I+   ++G  E    + FG  L+    P+ I+Y+ 
Sbjct: 305 EQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSS 364

Query: 207 VINGIAQFGDIEDAIMILSSMPSPNSSS----WNSILTGYVNRNRVPEALHLFGEM---- 258
           ++   A   D +    + + +   N ++     N++++ Y     + EA  +F ++    
Sbjct: 365 ILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERS 424

Query: 259 ------QSKDVPMDEY-----------TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
                 + +D P+D             TF++++S  A +  LT G  +H+  +K G  + 
Sbjct: 425 MISCITEGRDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSD 484

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
             V+++L+ MYS+CG +E A   F  L  +N+++W +MI+G A++G   + + LF  +  
Sbjct: 485 RFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDM-I 543

Query: 362 VRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGE 421
           +  ++P+ VT++ VL+ACSH  +   +  EYF SM +D+G+ P +EH   M+ L+ + G 
Sbjct: 544 LTGVKPNDVTYIAVLSACSHVGL-VREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGL 602

Query: 422 VWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNL 481
           V  A   I E+   +  +VW+ LL A  +  +++V  I+A  VI+LE      YV+L NL
Sbjct: 603 VKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNL 662

Query: 482 YTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           Y   G WD  + +R+ MR+  L KE G SW+EVEN 
Sbjct: 663 YADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENT 698



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 194/408 (47%), Gaps = 36/408 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKIN---SLADA 57
           P+ Y +  ++ A ++LG      QLH   L+ GF S+  VS  L+  Y K N   ++  A
Sbjct: 252 PDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYA 311

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSG-KYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           +K+F  + +  V+SW +LISGYVQSG +  K + LF E+    I  +  +++S L AC  
Sbjct: 312 NKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACAN 371

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           +     G  +H+ ++K +      + N L+ MY + G +E+A  VF ++ ++ +IS    
Sbjct: 372 ISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIS---- 427

Query: 177 IAASARNGNLELAFGFLHRLPNPD----TISYNEVINGIAQFGDIEDA----IMILSSMP 228
                R+  L+      HR+   D    + ++  +I+  A  G +        M L +  
Sbjct: 428 CITEGRDAPLD------HRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGF 481

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             +    NS+++ Y     + +A   F E++ ++V     ++++M+SG+A        + 
Sbjct: 482 GSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNV----ISWTSMISGLAKHGYAERALS 537

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN-----LVTWNAMITGY 343
           +   +I  G+  + V   A+L   S  G V      FRS+ R +     +  +  M+   
Sbjct: 538 LFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLL 597

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC-SHTDIPFDKVS 390
           AR+G + + +E   ++     L+ D++ +  +L AC SH +I   +++
Sbjct: 598 ARSGLVKEALEFINEMP----LKADALVWKTLLGACRSHDNIEVGEIA 641



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 151/311 (48%), Gaps = 48/311 (15%)

Query: 118 GSLQLGMAIHSKIVKYSL-ERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNS 175
           G L+LG A+H ++++  L +R  V+AN L+ +Y +CG+V  A  VF  M   +DI+SW +
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 176 VIAASARNG----NLELAFGFLHR--LPNPDTISY------------------------- 204
           + +  ARNG    +L L    L    LPN  T+                           
Sbjct: 122 MASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKM 181

Query: 205 ----------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
                     + +I+ +A+ GD+  A  +   +       W  +++ YV      EA+ +
Sbjct: 182 GLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEI 241

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F +        D YT S+M+S    L ++  G+ +HS  ++ G  +   V+  L+DMY+K
Sbjct: 242 FLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAK 301

Query: 315 CG---QVEIADSMFRSLCRKNLVTWNAMITGYARNG-DLTKVIELFEQLKTVRDLQPDSV 370
                 ++ A+ +F  + + ++++W A+I+GY ++G    KV+ LF ++     ++P+ +
Sbjct: 302 SNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLN-ESIKPNHI 360

Query: 371 TFLNVLAACSH 381
           T+ ++L AC++
Sbjct: 361 TYSSILKACAN 371



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 117/228 (51%), Gaps = 5/228 (2%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           L+ A++ +G  T  QQLH   LK+GF S+ FVS +L+  Y +   L DA + F E+   +
Sbjct: 456 LISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRN 515

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           V+SW S+ISG  + G   +AL+LF ++  + +  +  ++ + L+AC  +G ++ G     
Sbjct: 516 VISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFR 575

Query: 129 KIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNL 186
            + + + L   +    C++D+  + G V++A+    EM +  D + W +++ A   + N+
Sbjct: 576 SMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRSHDNI 635

Query: 187 ---ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
              E+A   +  L   D   Y  + N  A  G  ++   I S+M   N
Sbjct: 636 EVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNN 683



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 158/361 (43%), Gaps = 49/361 (13%)

Query: 23  QQLHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHKMFVEIPQ-PSVVSWNSLISGYV 80
           + LH  +L+   L  +  V+ +L+  Y +  ++A A  +F  +     +VSW ++ S   
Sbjct: 68  RALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLA 127

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL---ER 137
           ++G  R++L L  E+  S +  +AY+  +   AC     L   +      + + +     
Sbjct: 128 RNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFP-HELYCLVGGVVLGLVHKMGLWGT 186

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA----ASARNGNLELAFGFL 193
            + + + LIDM  + G +  A  VF  +I+K ++ W  +I+           +E+   FL
Sbjct: 187 DIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFL 246

Query: 194 HRLPNPDTISYNEVINGIAQFG----------------------------------DIED 219
                PD  + + +I+   + G                                  +IE 
Sbjct: 247 EDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQ 306

Query: 220 AI----MILSSMPSPNSSSWNSILTGYVNRN-RVPEALHLFGEMQSKDVPMDEYTFSTML 274
           A+     +   M   +  SW ++++GYV    +  + + LFGEM ++ +  +  T+S++L
Sbjct: 307 AMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSIL 366

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
              A +S    G  +H+ VIK    A+  V +AL+ MY++ G +E A  +F  L  ++++
Sbjct: 367 KACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMI 426

Query: 335 T 335
           +
Sbjct: 427 S 427


>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 534

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 151/515 (29%), Positives = 264/515 (51%), Gaps = 38/515 (7%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
           Y +  L R  S   W    +++H  I+  G   + F+ T ++    K+  +  A ++F +
Sbjct: 12  YFIPFLQRVKSRNEW----KKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQ 67

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEI-YADAYSFTSALAACGQLGSLQL 122
           +  P+V  +NS+I  Y  +  Y   + ++ +L R  I + D ++F     +C  LGS  L
Sbjct: 68  VSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYL 127

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR 182
           G  +H  + K+     VV  N LIDMY K   + DA  VF EM ++D+ISWNS+      
Sbjct: 128 GKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSL------ 181

Query: 183 NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGY 242
                                    ++G A+ G ++ A  +   M      SW ++++GY
Sbjct: 182 -------------------------LSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGY 216

Query: 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
                  EA+  F EMQ   +  DE +  ++L   A L +L  G  IH    ++GL    
Sbjct: 217 TGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQT 276

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
            V +AL++MYSKCG +  A  +F     K++++W+ MI+GYA +G+  +  E F +++  
Sbjct: 277 GVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRA 336

Query: 363 RDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422
           + ++P+ +TFL +L+ACSH  + + +  +YF+ M +DY I+P +EH   +I ++ + G++
Sbjct: 337 K-VKPNGITFLGLLSACSHVGL-WQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKL 394

Query: 423 WRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482
            RA  + + +       +W +LLS+     +LDVA ++   ++++E D    YV+L N+Y
Sbjct: 395 ERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDVALVAMDHLVEVEPDDMGNYVLLANIY 454

Query: 483 TSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
              G W+  S +R  +R+  ++K  GCS IEV N+
Sbjct: 455 ADLGKWEDVSRLRKIIRKENMKKTPGCSLIEVNNI 489



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 143/324 (44%), Gaps = 72/324 (22%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    + ++ + LG     +Q+H ++ K G   +V    AL+  Y K + L DAHK+
Sbjct: 107 PDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKV 166

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRK-------------------------------AL 89
           F E+ +  V+SWNSL+SGY + G+ +K                               A+
Sbjct: 167 FDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAM 226

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
           + F E++ + I  D  S  S L +C  LGSL+LG  IH    +  L +   + N LI+MY
Sbjct: 227 DFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMY 286

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------PN----- 198
            KCG +  AI +F +   KD+ISW+++I+  A +GN   AF     +      PN     
Sbjct: 287 SKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFL 346

Query: 199 -----------------------------PDTISYNEVINGIAQFGDIEDAIMILSSMP- 228
                                        P    Y  +I+ +A+ G +E A+ I  +MP 
Sbjct: 347 GLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPV 406

Query: 229 SPNSSSWNSILTGYVNRNRVPEAL 252
            P+S  W S+L+    +  +  AL
Sbjct: 407 KPDSKIWGSLLSSCRTKGNLDVAL 430



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 130/283 (45%), Gaps = 20/283 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  L  +L + + LG     + +H Y  + G L    V  AL+  Y K   L+ A ++
Sbjct: 239 PDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQL 298

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +     V+SW+++ISGY   G   +A   F+E++R+++  +  +F   L+AC  +G  
Sbjct: 299 FEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLW 358

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           Q G+     + + Y +E  +    CLID+  + G +E A+ +   M +  D   W S+++
Sbjct: 359 QQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLS 418

Query: 179 ASARNGNLELAFGFLHRL--PNPDTI-SYNEVINGIAQFGDIEDAIMI--------LSSM 227
           +    GNL++A   +  L    PD + +Y  + N  A  G  ED   +        +   
Sbjct: 419 SCRTKGNLDVALVAMDHLVEVEPDDMGNYVLLANIYADLGKWEDVSRLRKIIRKENMKKT 478

Query: 228 PSPNSSSWNSILTGYVNRN-------RVPEALHLFGEMQSKDV 263
           P  +    N+I+  +V  +        +   L LF   Q +DV
Sbjct: 479 PGCSLIEVNNIVQEFVAGDNSKPFWTEISLVLQLFTSHQDQDV 521


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 151/537 (28%), Positives = 293/537 (54%), Gaps = 43/537 (8%)

Query: 20  TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79
           ++  Q+HC ++K GF ++ +V T+L+  Y K   + DA  +F ++       WN++IS Y
Sbjct: 273 SFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAY 332

Query: 80  VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
           V +G+    L ++ +++  +I  D+ + T+ L++C  +GS   G  IH+++VK  ++  V
Sbjct: 333 VGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNV 392

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL--- 196
            + + L+ MY KCG+ +DA  +F  +  +D+++W S+I+   +N     A  F + +   
Sbjct: 393 ALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVY 452

Query: 197 ---PNPD-------------TISYNEVINGIAQFGDIEDAIMILSS-------------- 226
              P+ D              ++    I+G+A    +E  + + SS              
Sbjct: 453 GEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMS 512

Query: 227 ------MPSPNSSSWNSILTGYVNRNRVPE-ALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
                 MP  N  +WNSI++ Y  RN +P+ ++ LF +M    +  D  + +++L  ++ 
Sbjct: 513 GNVFSDMPLKNLVAWNSIISCYC-RNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSS 571

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
           ++ L  G  +H  +I+Q + + + + +AL+DMY KCG ++ A  +F+++ + NLVTWN M
Sbjct: 572 VAVLRKGKAVHGYLIRQRIPSDLQLENALIDMYIKCGFLKYAQHIFQNMLQTNLVTWNIM 631

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKD 399
           I G   +GD  K + LF+++++   + PD +TF+++L +C+H     ++  + F+ MT +
Sbjct: 632 IAGCGSHGDWLKAMSLFDEMRSF-GIAPDDITFISLLTSCNHCGF-IEEGLKLFQLMTVE 689

Query: 400 YGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARI 459
           +GI+P +EH  +++ L+G+ G +  A   ++ L       +W +LL +     ++++ ++
Sbjct: 690 HGIEPRMEHYVNIVDLLGRAGRLDDAYAFVKNLPIEPDRSIWLSLLCSCRVHHNVELGKL 749

Query: 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +A +++ +E      YV L NLY  +   D A+ +R  M+E+GL+K  GCSWIEV N
Sbjct: 750 AAHKLLDIEPSRGSNYVQLLNLYGENELQDRAANLRASMKEKGLKKTPGCSWIEVGN 806



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 116/408 (28%), Positives = 193/408 (47%), Gaps = 43/408 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y L  LL AS   G   Y +Q+H Y ++  F  + F+ + L+  Y       DA ++
Sbjct: 154 PDAYSLCILLGASD--GHLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRL 211

Query: 61  FVEIP-QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F E+  + +VV+WN +I G+ ++G +  +L +++  +   +   + SFTS L+AC Q   
Sbjct: 212 FKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEF 271

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           +  GM +H  +VK   E    +   L+ MY KC  VEDA  VF ++  K    WN++I+A
Sbjct: 272 VSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISA 331

Query: 180 SARNGNLELAFGFLHRLP----NPDTISYNEVIN-----GIAQFGDI------------- 217
              NG          ++      PD+++   V++     G   FG +             
Sbjct: 332 YVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSN 391

Query: 218 -----------------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                            +DA  I +++   +  +W S+++G+    +  EAL  +  M  
Sbjct: 392 VALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTV 451

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
                D    ++++S   GL  +  G  IH   IK GL+  + VAS+L+DMYSK    ++
Sbjct: 452 YGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKM 511

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           + ++F  +  KNLV WN++I+ Y RNG     I LF Q+ T   L PD
Sbjct: 512 SGNVFSDMPLKNLVAWNSIISCYCRNGLPDLSISLFSQM-TQYGLFPD 558



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 201/418 (48%), Gaps = 49/418 (11%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFL-SNVFVSTALMGFYRKINSLADAHKMFVEIPQP 67
           LL+A   L    Y + +H  I+  GF  S+ +++T+L+ FY K  S  +A K+F ++P+ 
Sbjct: 55  LLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKVFDKLPES 114

Query: 68  S-----VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQL 122
                 V  WNS+++GY + G  ++ +  F  ++   +  DAYS    L A    G L  
Sbjct: 115 EVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGASD--GHLGY 172

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIAASA 181
              IH   V+        + + LI MY  CG   DA  +F E+ DK ++++WN +I    
Sbjct: 173 AKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFG 232

Query: 182 RNGNLE--LAFGFLHRLPNPDTI--SYNEVINGIAQ-----FGD---------------- 216
            NG  E  L    L +  N   +  S+   ++   Q     FG                 
Sbjct: 233 ENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPY 292

Query: 217 --------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                         +EDA  +   +    +  WN++++ YV   R  + L ++ +M+   
Sbjct: 293 VCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQ 352

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +P D  T + +LS    + +  +G LIH+ ++K+ + +++ + SALL MYSKCG  + A+
Sbjct: 353 IPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDAN 412

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           S+F ++  +++V W +MI+G+ +N    + +E +  + TV   +PDS    +V++AC+
Sbjct: 413 SIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSM-TVYGEKPDSDIMASVVSACT 469



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 181/375 (48%), Gaps = 60/375 (16%)

Query: 49  RKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFT 108
           RK+++LA +     ++  P +V+        VQ G+Y  AL  +    R+ + A  +++ 
Sbjct: 9   RKLSNLAHS-----DLIDPKIVT-------LVQQGQYVDALQFY---SRNPLNATRFTYP 53

Query: 109 SALAACGQLGSLQLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
           S L ACG L +LQ G  IHS I+ K        I   LI+ Y KCGS  +A+ VF ++ +
Sbjct: 54  SLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKVFDKLPE 113

Query: 168 -----KDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTIS-------------YN 205
                +D+  WNS++    R G+ +       R+      PD  S             Y 
Sbjct: 114 SEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGASDGHLGYA 173

Query: 206 EVINGIAQ----FGD--IEDAIMILS-SMPSP--------------NSSSWNSILTGYVN 244
           + I+G +     +GD  +E  ++ +  S   P              N  +WN ++ G+  
Sbjct: 174 KQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGE 233

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV 304
                 +L ++   ++++V +   +F++ LS       +++GM +H  ++K G +    V
Sbjct: 234 NGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYV 293

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
            ++LL MYSKC  VE A+++F  +  K    WNAMI+ Y  NG     +++++Q+K ++ 
Sbjct: 294 CTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQ- 352

Query: 365 LQPDSVTFLNVLAAC 379
           + PDS+T  NVL++C
Sbjct: 353 IPPDSLTATNVLSSC 367



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 171/368 (46%), Gaps = 40/368 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+     ++L +   +G   + + +H  ++K    SNV + +AL+  Y K  +  DA+ +
Sbjct: 355 PDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSI 414

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I    VV+W S+ISG+ Q+ KY +AL  +  +       D+    S ++AC  L ++
Sbjct: 415 FNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNV 474

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IH   +K  LE+ V +A+ L+DMY K    + +  VF +M  K++++WNS+I+  
Sbjct: 475 NLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWNSIISCY 534

Query: 181 ARNGNLELAF--------------------------------------GFLHRLPNPDTI 202
            RNG  +L+                                       G+L R   P  +
Sbjct: 535 CRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQRIPSDL 594

Query: 203 SY-NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+   + G ++ A  I  +M   N  +WN ++ G  +     +A+ LF EM+S 
Sbjct: 595 QLENALIDMYIKCGFLKYAQHIFQNMLQTNLVTWNIMIAGCGSHGDWLKAMSLFDEMRSF 654

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            +  D+ TF ++L+       +  G+ L     ++ G++  +     ++D+  + G+++ 
Sbjct: 655 GIAPDDITFISLLTSCNHCGFIEEGLKLFQLMTVEHGIEPRMEHYVNIVDLLGRAGRLDD 714

Query: 321 ADSMFRSL 328
           A +  ++L
Sbjct: 715 AYAFVKNL 722



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 15/211 (7%)

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS-IVVASALLDMYSKCGQVEIADSMF 325
            +T+ ++L     LS L +G  IHS +I +G   S   + ++L++ Y KCG    A  +F
Sbjct: 49  RFTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKVF 108

Query: 326 RSLCR-----KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             L       +++  WN+++ GY R G   + I  F +++ +  ++PD+ + L +L   S
Sbjct: 109 DKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQ-LFGVRPDAYS-LCILLGAS 166

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
              + + K    +      YG  P +E    +I +    G    A R+ +EL      V 
Sbjct: 167 DGHLGYAKQIHGYSVRKVFYG-DPFLES--GLIYMYFSCGRPLDAWRLFKELEDKGNVVA 223

Query: 441 WRALLSASGAC----SDLDVARISAAEVIKL 467
           W  ++   G      + L+V  ++  E +KL
Sbjct: 224 WNVMIGGFGENGLWENSLEVYLLAKNENVKL 254


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 155/498 (31%), Positives = 259/498 (52%), Gaps = 43/498 (8%)

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY-ADAYSFTSALAACGQLG 118
           +F +I QP++  WN++I G V +  +  A+  F  L RSE +  + ++F   L AC +L 
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIE-FYGLMRSEGFLPNNFTFPFVLKACARLL 126

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            LQLG+ IH+ +VK   +  V +   L+ +Y KCG +EDA  VF ++ DK+++SW ++I+
Sbjct: 127 DLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIIS 186

Query: 179 ASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDI----------------- 217
                G    A     RL      PD+ +   V++   Q GD+                 
Sbjct: 187 GYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVR 246

Query: 218 ------------------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                             E A  +   MP  +  SW +++ GY       EA+ LF +MQ
Sbjct: 247 NVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQ 306

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            ++V  D YT   +LS  A L AL  G  +   V +     + V+ +AL+D+Y+KCG + 
Sbjct: 307 RENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMS 366

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F+ +  K+ V WNA+I+G A NG +     LF Q++ +  ++PD  TF+ +L  C
Sbjct: 367 RAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKL-GIKPDGNTFIGLLCGC 425

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +H  +  D+   YF SM + + + P++EH   M+ L+G+ G +  A ++IR +   +  +
Sbjct: 426 THAGL-VDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAI 484

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           VW ALL A     D  +A ++  ++I+LE  +   YV+L N+Y+++  WD A+ +R  M 
Sbjct: 485 VWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMN 544

Query: 500 ERGLRKEAGCSWIEVENV 517
           E+ ++K  GCSWIEV+ +
Sbjct: 545 EKRIQKPPGCSWIEVDGI 562



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/459 (28%), Positives = 218/459 (47%), Gaps = 49/459 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +    +L+A + L       ++H  ++K GF  +VFV T+L+  Y K   L DAHK+
Sbjct: 110 PNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKV 169

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +IP  +VVSW ++ISGY+  GK+R+A+++F  L    +  D+++    L+AC QLG L
Sbjct: 170 FDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDL 229

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS----- 175
             G  IH  I++  + R V +   L+DMY KCG++E A  VF  M +KDI+SW +     
Sbjct: 230 NSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGY 289

Query: 176 ------------------------------VIAASARNGNLELAFGFLHRLPNPDTISYN 205
                                         V++A AR G LEL   ++  L + +   YN
Sbjct: 290 ALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELG-EWVSGLVDRNEFLYN 348

Query: 206 EV-----INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            V     I+  A+ G +  A  +   M   +   WN+I++G      V  +  LFG+++ 
Sbjct: 349 PVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEK 408

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-QGLDASIVVASALLDMYSKCGQVE 319
             +  D  TF  +L G      +  G    + + +   L  SI     ++D+  + G ++
Sbjct: 409 LGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLD 468

Query: 320 IADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            A  + R++    N + W A++ G  R    T++ EL   LK + +L+P +     +L+ 
Sbjct: 469 EAHQLIRNMPMEANAIVWGALL-GACRIHRDTQLAEL--ALKQLIELEPWNSGNYVLLSN 525

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417
               ++ +D+ ++   SM +    KP     CS I + G
Sbjct: 526 IYSANLKWDEAAKVRLSMNEKRIQKPP---GCSWIEVDG 561



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 102/192 (53%), Gaps = 6/192 (3%)

Query: 190 FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
           FG  H     D    N ++     F D      +   +  PN   WN+++ G V+ +   
Sbjct: 40  FGLCH-----DNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFD 94

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
           +A+  +G M+S+    + +TF  +L   A L  L  G+ IH+ V+K G D  + V ++L+
Sbjct: 95  DAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLV 154

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
            +Y+KCG +E A  +F  +  KN+V+W A+I+GY   G   + I++F +L  + +L PDS
Sbjct: 155 CLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEM-NLAPDS 213

Query: 370 VTFLNVLAACSH 381
            T + VL+AC+ 
Sbjct: 214 FTIVRVLSACTQ 225


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 164/510 (32%), Positives = 265/510 (51%), Gaps = 35/510 (6%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65
             +L +A S +    + Q  H  +LK GF S +F+  +L+  Y     L  A K+F ++ 
Sbjct: 160 FIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMD 219

Query: 66  QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA 125
              +VSWNSLI GY Q  ++++ L+LF  +  + + AD+ +    + AC           
Sbjct: 220 DRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACS---------- 269

Query: 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN 185
                  Y  E GVV +            +ED      + +D D+   NS+I    R G 
Sbjct: 270 -------YLCEDGVVDS--------MVKYIED------KHVDIDVYLGNSLIDMYGRRGL 308

Query: 186 LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245
           ++LA     R+   + +S+N ++ G A  GD+  A  + + MP  N  SW  +++G    
Sbjct: 309 VDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQA 368

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
           N+  +AL LF EM   +V  DE T S++LS  + L  L  G  +H  + +  + + + V 
Sbjct: 369 NQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVG 428

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD- 364
           +AL+DMY KCG V+ A  +F  + +K+ V+W +MI G A NG +  V ELF Q+  +RD 
Sbjct: 429 NALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQM--LRDG 486

Query: 365 LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424
           LQP   +F+ +L AC+H  +  DK  EYFESM   YG++P ++H   ++ L+ + GE+ R
Sbjct: 487 LQPTHGSFIGILLACTHAGL-VDKGLEYFESMEHVYGLRPEMKHYGCVVDLLSRSGELDR 545

Query: 425 AQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484
           A   I+++      V+WR LLSA     +L +A I+ +++++L+  +   YV+L N Y  
Sbjct: 546 AYEFIKQMPVVPDVVLWRILLSACKLHRNLVLAEIATSKLLELDPSNSGNYVLLSNTYAG 605

Query: 485 HGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
              WD AS MR+ M    ++K +  S IEV
Sbjct: 606 SDRWDDASRMRDLMVVGDVQKPSSWSSIEV 635



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 127/268 (47%), Gaps = 10/268 (3%)

Query: 194 HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
           H   NP ++S N + +       +  A      +  P    +N ++ G        EA+ 
Sbjct: 84  HHHKNPKSMS-NVIKSYALSRSHLNKANFAFIQIGQPTLLIFNYLIRGLSQSENPNEAIV 142

Query: 254 LFGE-MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
           ++ + M ++ +  D  TF  +    + +  +  G + H  V+K G  + + + ++L+ MY
Sbjct: 143 MYSDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMY 202

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
              G++  A  +F  +  ++LV+WN++I GY++     +V++LF  ++   ++  DSVT 
Sbjct: 203 GYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREA-NVTADSVTM 261

Query: 373 LNVLAACSH--TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
           + V+ ACS+   D   D + +Y E    D  +   V    S+I + G++G V  A+R+  
Sbjct: 262 VKVILACSYLCEDGVVDSMVKYIE----DKHVDIDVYLGNSLIDMYGRRGLVDLARRVFD 317

Query: 431 ELGFGSYGVVWRALLSASGACSDLDVAR 458
            +   +  V W A+L+      DL  A+
Sbjct: 318 RMQEKNI-VSWNAMLTGYATAGDLVAAK 344



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 117/256 (45%), Gaps = 13/256 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +  +L A S LG     Q +H Y+ +    S+V+V  AL+  Y K   +  A ++
Sbjct: 388 PDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEV 447

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ +   VSW S+I G   +G       LF ++ R  +     SF   L AC   G +
Sbjct: 448 FHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLV 507

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G+     +   Y L   +    C++D+  + G ++ A     +M +  D++ W  +++
Sbjct: 508 DKGLEYFESMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFIKQMPVVPDVVLWRILLS 567

Query: 179 ASARNGNL---ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDA-----IMILSSMPSP 230
           A   + NL   E+A   L  L   ++ +Y  + N  A     +DA     +M++  +  P
Sbjct: 568 ACKLHRNLVLAEIATSKLLELDPSNSGNYVLLSNTYAGSDRWDDASRMRDLMVVGDVQKP 627

Query: 231 NSSSWNSI-LTGYVNR 245
             SSW+SI + G  N+
Sbjct: 628 --SSWSSIEVIGATNK 641


>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
 gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
          Length = 572

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 154/515 (29%), Positives = 267/515 (51%), Gaps = 34/515 (6%)

Query: 1   PNEYVLFHLLRASSD-LGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P    L  LLR+++  +G   Y +  H    + G L + FV TAL+G Y     + DA K
Sbjct: 67  PGPRALPALLRSAARCVGAGAYVRGAHALAFRVGSLDDGFVRTALVGAYAACGCVGDARK 126

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  +    VVSW  ++  Y Q+  Y++AL  F +++ S + +D     + L+ACG +  
Sbjct: 127 VFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLSDQLILATVLSACGHIRH 186

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+ G +IHS ++   +     +++ LI++Y  C S+E A  ++  M              
Sbjct: 187 LRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKLYNGM-------------- 232

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
                            P  D +S   ++ G A+    E A  I   MP  +  SW++++
Sbjct: 233 -----------------PRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMI 275

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           +GY + N+  EAL LF +MQ   +  DE T  +++S  A L +L     IH+ +   GL+
Sbjct: 276 SGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLN 335

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
             + + +AL+DM++KCG + +A ++F  + +KN++TW +MIT +A +GD    + LFEQ+
Sbjct: 336 KILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQM 395

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           +    ++P+ VTFLN+L AC H  +  +  S  F SM + YGI+P  EH   M+ L+G+ 
Sbjct: 396 RN-EGVEPNEVTFLNLLYACCHAGLVHEGRS-LFSSMVQQYGIEPKHEHYGCMVDLLGRA 453

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
             +  A  +I  +       VW +LL+A     DL +   +A ++++L+ + D   V+L 
Sbjct: 454 KLMQEAVNLIESMHLRPNVPVWGSLLAACWMHGDLKLGAFAAKKILQLDPNHDGASVLLS 513

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
            +Y    N + A  +R+ M+ +G+ KE G SW+++
Sbjct: 514 KIYMKSDNLNDAQEVRDVMKLQGVSKETGLSWMDL 548


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 169/557 (30%), Positives = 277/557 (49%), Gaps = 47/557 (8%)

Query: 2   NEYVLFHL-LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           ++ VL  L L+AS       Y ++LHC  +K+G  ++ FV   L+  Y K   L +A K+
Sbjct: 121 DDVVLLSLALKASVRSADFRYGRRLHCNAVKAGG-ADGFVMNCLVDMYAKAGDLENARKV 179

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I   +VVSW S++SG +Q+G   + L LF E+    +    Y+  S L AC  LGSL
Sbjct: 180 FDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMACTMLGSL 239

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H  ++K+ +     I   ++DMY KCG VEDA  +F E+   D++ W ++I   
Sbjct: 240 HQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGY 299

Query: 181 ARNGNLELAF------GFLHRLPNPDTIS------------------------------- 203
            +NG+   A        F+H +PN  TI+                               
Sbjct: 300 TQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKLLVIEND 359

Query: 204 --YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +++  A+   + +A  I   + + +  +WNS++ GYV  +   EAL LF +M+ +
Sbjct: 360 VVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQ 419

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
               D  +    LS    L  L  G   H+  +K+   +++ V +ALL++Y+KC  +  A
Sbjct: 420 GSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNLYNKCADLPSA 479

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACS 380
             +F  +  +N VTW AMI GY   GD    I+L    K ++D +QP+ V F ++L+ CS
Sbjct: 480 QRVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDLLN--KMLKDNIQPNEVVFTSILSTCS 537

Query: 381 HTD-IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           HT  +   K+   F+SM + + I P+++H   M+ ++ + G +  A   I+++   +   
Sbjct: 538 HTGMVSVGKMC--FDSMAQYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMPADIS 595

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W A L      S L+    +   ++ L  D    YV++ NLYTS+G WD +  +R  M+
Sbjct: 596 IWGAFLHGCKLHSRLEFGEEAINRMMVLHPDKPDFYVLMSNLYTSYGRWDKSLAIRRLMQ 655

Query: 500 ERGLRKEAGCSWIEVEN 516
           ERGL K  GCS + +EN
Sbjct: 656 ERGLVKLPGCSSVGLEN 672



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 226/496 (45%), Gaps = 52/496 (10%)

Query: 1   PNEYVLFH-LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P+   L H LL A + L      + LH  +L  G L  +   T L+  Y  +  LA A +
Sbjct: 20  PHGGALLHRLLPACATL---PSLRALHARLLAHGLLRALRARTKLLSCYAALGDLASARR 76

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER--SEIYADAYSFTSALAACGQL 117
           +  E P+P   ++   +  +  +G++  AL L   + R   E + D    + AL A  + 
Sbjct: 77  VLDETPRPDPYTYRVALGWHAAAGRHADALALHRGMRRRCPEAHDDVVLLSLALKASVRS 136

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
              + G  +H   VK     G V+ NCL+DMY K G +E+A  VF  ++ ++++SW S++
Sbjct: 137 ADFRYGRRLHCNAVKAGGADGFVM-NCLVDMYAKAGDLENARKVFDRILGRNVVSWTSML 195

Query: 178 AASARNGNLELAFGFLHR------LPNPDTIS---------------------------- 203
           +   +NG  E      +       LP+  T++                            
Sbjct: 196 SGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMV 255

Query: 204 YNE-----VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
           +N      V++   + G++EDA  +   +   +   W +++ GY       +AL LF + 
Sbjct: 256 FNPFITAAVLDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDK 315

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           +   +  +  T +T+LS  A L  L+ G LIH+  +K  +  + VV +AL+DMY+KC  +
Sbjct: 316 KFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKLLVIENDVVMNALVDMYAKCKAL 375

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
             A+ +F  +  K++VTWN++I GY  N    + + LF Q++ V+   PD+++ +N L+A
Sbjct: 376 SEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMR-VQGSSPDAISIVNALSA 434

Query: 379 C-SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           C    D+   K    F +          V    +++ L  +  ++  AQR+  E+   + 
Sbjct: 435 CVCLGDLLIGKC---FHTYAVKRAFLSNVYVNTALLNLYNKCADLPSAQRVFSEMSERN- 490

Query: 438 GVVWRALLSASGACSD 453
            V W A++   G   D
Sbjct: 491 SVTWGAMIGGYGMQGD 506



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 189/380 (49%), Gaps = 21/380 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+EY +  +L A + LG     + +H  ++K G + N F++ A++  Y K   + DA ++
Sbjct: 221 PSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRL 280

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+    +V W ++I GY Q+G    AL LF + +   I  ++ +  + L+A  QL +L
Sbjct: 281 FDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNL 340

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IH+  VK  +    V+ N L+DMY KC ++ +A G+FG + +KD+++WNS+IA  
Sbjct: 341 SLGRLIHAMSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGY 400

Query: 181 ARN--GNLELAFGFLHRL--PNPDTISYNEVINGIAQFGD--IEDAIMILSSMPSPNSSS 234
             N  GN  L      R+   +PD IS    ++     GD  I       +   +  S+ 
Sbjct: 401 VENDMGNEALMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFLSNV 460

Query: 235 W-NSILTGYVNR-NRVPEALHLFGEMQSKDVPMDEYTFSTMLS--GIAGLSALTWGMLIH 290
           + N+ L    N+   +P A  +F EM  +    +  T+  M+   G+ G SA +  +L  
Sbjct: 461 YVNTALLNLYNKCADLPSAQRVFSEMSER----NSVTWGAMIGGYGMQGDSAGSIDLL-- 514

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT-----WNAMITGYAR 345
           + ++K  +  + VV +++L   S  G V +    F S+ +   +T     +  M+   AR
Sbjct: 515 NKMLKDNIQPNEVVFTSILSTCSHTGMVSVGKMCFDSMAQYFNITPSMKHYACMVDVLAR 574

Query: 346 NGDLTKVIELFEQLKTVRDL 365
            G+L + +E  +++    D+
Sbjct: 575 AGNLEEALEFIQKMPMPADI 594


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 173/586 (29%), Positives = 279/586 (47%), Gaps = 81/586 (13%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
            E ++  LLR    +   +  QQLH  +LK    S++   + L+  Y  IN L D+ ++F
Sbjct: 5   TEALVKALLRNPLSIKSRSQAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLF 63

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             I  P  ++W S+I  Y   G   ++L  F+ +  S +Y D   F S L +C  L  L 
Sbjct: 64  NTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLN 123

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGK-------------CGSV------------- 155
           LG ++H  I++  L+  +   N L++MY K              G V             
Sbjct: 124 LGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRT 183

Query: 156 -----EDAI-GVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYN 205
                ED++  +F  M +KD++SWN++IA +ARNG  E     +  +      PD+ + +
Sbjct: 184 VSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLS 243

Query: 206 EVINGIAQFGDIE-----------------------------------DAIMILSSMPSP 230
            V+  IA+  DI                                    D+  + + +   
Sbjct: 244 SVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTER 303

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
           +  SWNSI+ G V      E L  F +M    +    Y+FS+++   A L+ L  G  +H
Sbjct: 304 DGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLH 363

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
             + + G D +I +AS+L+DMY+KCG +  A  +F  +  +++V+W AMI G A +G   
Sbjct: 364 GYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAP 423

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
             IELFEQ++T             VL ACSH  +  D+  +YF SMT+D+GI P VEH  
Sbjct: 424 DAIELFEQMET--------EGIKAVLTACSHGGL-VDEAWKYFNSMTRDFGIAPGVEHYA 474

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
           ++  L+G+ G +  A   I  +  G  G +W  LLSA     ++D+A   A  +++++ +
Sbjct: 475 AVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPN 534

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +   Y++L N+Y++   W  A+  R  MR  G+RK   CSWIEV+N
Sbjct: 535 NTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKN 580



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 95/202 (47%), Gaps = 9/202 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  Y    ++ A + L      +QLH YI ++GF  N+F++++L+  Y K  ++  A ++
Sbjct: 338 PKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQI 397

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    +VSW ++I G    G+   A+ LF ++E   I A        L AC   G +
Sbjct: 398 FDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKA-------VLTACSHGGLV 450

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIG-VFGEMIDKDIISWNSVIA 178
                  + + + + +  GV     + D+ G+ G +E+A   + G  I      W ++++
Sbjct: 451 DEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLS 510

Query: 179 ASARNGNLELAFGFLHRLPNPD 200
           A   + N+++A    +R+   D
Sbjct: 511 ACRVHKNIDMAEKVANRILEVD 532


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 157/544 (28%), Positives = 275/544 (50%), Gaps = 62/544 (11%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           ++RA + +G    C+ +H ++++ GF  N+ V   LMG Y KI  + DA K+F  +   S
Sbjct: 141 VIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRS 200

Query: 69  VVSWNSLISGYV-----------------------------------QSGKYRKALNLFV 93
            VSWN+++SGY                                    + G++ + + LF 
Sbjct: 201 CVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFG 260

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
            +    I A A +    L+    L +   G  IH  +VK   E  + + N LI +YGK G
Sbjct: 261 RMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHG 320

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQ 213
           +V  A  +F E+  K+I+SWN++I++ A  G  + AF    +L   D             
Sbjct: 321 NVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYP---------- 370

Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
                        M  PN  SW++++ G+ ++ +  EAL LF  MQ   V  +  T +++
Sbjct: 371 -------------MVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASV 417

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           LS  A L+AL  G  IH  V++  +D +I+V + L++MY+K G  +  + +F  +  K+L
Sbjct: 418 LSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDL 477

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           ++WN M+ GY  +G     I  F+Q+  ++D  +PD VTF+ VL+ACSH  +  +   E 
Sbjct: 478 ISWNTMVAGYGIHGLGENAIRTFDQM--IKDGFEPDGVTFVAVLSACSHAGLVAEG-REL 534

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
           F+ M K++ ++P +EH   M+ L+G+ G +  A ++++ +       VW ALL++     
Sbjct: 535 FDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHK 594

Query: 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           + +VA  +A+++  L  +    Y++L N+Y + G W+ ++ +R   + +GL+K  G SWI
Sbjct: 595 NTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWI 654

Query: 513 EVEN 516
           +V+ 
Sbjct: 655 QVKK 658



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 176/362 (48%), Gaps = 33/362 (9%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP---SVVSWNSLISGY 79
           QQ+H  I+ +G   + F++  ++  Y     ++DA ++F   P     +++ WNS++   
Sbjct: 51  QQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRAN 110

Query: 80  VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
           V  G   +AL ++  + +  + AD ++F   + AC  +GS +L  ++H  +V+   +  +
Sbjct: 111 VAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNL 170

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            + N L+ MYGK G ++DA  VF  M  +  +SWN++++  A N +              
Sbjct: 171 HVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCH------------ 218

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                          G  E   M+ S+   PN  +W S+L+ +    +  E + LFG M+
Sbjct: 219 ---------------GASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMR 263

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            + +       + +LS    L+A   G +IH  V+K G +  + V ++L+ +Y K G V 
Sbjct: 264 MRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVN 323

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD---LQPDSVTFLNVL 376
            A  +F  +  KN+V+WNA+I+ YA  G   +   +F QL+   +   ++P+ V++  V+
Sbjct: 324 AARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVI 383

Query: 377 AA 378
             
Sbjct: 384 GG 385



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 134/294 (45%), Gaps = 43/294 (14%)

Query: 207 VINGIAQFGDIEDAIMILSSMPSPNSSS---WNSILTGYVNRNRVPEALHLFGEMQSKDV 263
           V++  A FG + DA  +    P    S+   WNSIL   V      EAL ++  M+   V
Sbjct: 72  VVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGV 131

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             D +TF  ++   A + +      +H  V++ G   ++ V + L+ MY K G+++ A  
Sbjct: 132 SADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARK 191

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F  +  ++ V+WN M++GYA N D     E+F  + +   L+P+ VT+ ++L+  SH  
Sbjct: 192 VFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSA-GLEPNLVTWTSLLS--SHA- 247

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
               +  ++ E+M                  L G+          +R  G G+       
Sbjct: 248 ----RCGQHVETM-----------------ELFGR----------MRMRGIGATAEALAV 276

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYV---MLCNLYTSHGNWDVASVM 494
           +LS S   +  D  ++    V+K  G  +Y++V   ++C LY  HGN + A ++
Sbjct: 277 VLSVSVDLAAFDEGKVIHGYVVK-GGFENYLFVKNSLIC-LYGKHGNVNAARIL 328



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 95/190 (50%), Gaps = 2/190 (1%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N   +  +L   ++L      +++H ++++S    N+ V   L+  Y K  S  + + +F
Sbjct: 410 NSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVF 469

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            +I    ++SWN++++GY   G    A+  F ++ +     D  +F + L+AC   G + 
Sbjct: 470 EKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVA 529

Query: 122 LGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
            G  +  K++K + +E  +    C++D+ G+ G +++A  V   M ++ +   W +++ +
Sbjct: 530 EGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNS 589

Query: 180 SARNGNLELA 189
              + N E+A
Sbjct: 590 CRMHKNTEVA 599


>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 737

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 151/497 (30%), Positives = 263/497 (52%), Gaps = 47/497 (9%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H +++K+    + F++  L+  Y K      AHK F ++P  +  SWN+LIS Y ++G 
Sbjct: 32  VHGHLIKTALFFDAFLANGLIDAYSKCGCEESAHKTFGDLPNKTTRSWNTLISFYSKTGF 91

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           + +A NLF ++ +  +     S+ S ++     G+LQ    +H   V   +E  V++ N 
Sbjct: 92  FDEAHNLFDKMPQRNVV----SYNSLIS-----GNLQWLRQVHGVAVIVGMEWNVILNNA 142

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISY 204
           LID YGKCG    +  VF  M +++++SW S++ A  R   L+                 
Sbjct: 143 LIDAYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLD----------------- 185

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
                         +A  +   MP  N+ SW ++LTG+V      EA  +F +M  + V 
Sbjct: 186 --------------EACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVR 231

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVI---KQGLDASIVVASALLDMYSKCGQVEIA 321
               TF +++   A  + +  G  +H  +I   K G   ++ V +AL+DMY+KCG ++ A
Sbjct: 232 PSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSA 291

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           +++F     +++VTWN +ITG+A+NG   + + +F ++   + ++P+ VTFL VL+ C+H
Sbjct: 292 ENLFEMAPMRDVVTWNTLITGFAQNGHGEESLAVFRRMIEAK-VEPNHVTFLGVLSGCNH 350

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGV 439
             +  + + +  + M + YG+KP  EH   +I L+G++  +  A  +I ++  G  ++  
Sbjct: 351 AGLDNEGL-QLVDLMERQYGVKPKAEHYALLIDLLGRRNRLMEAMSLIEKVPDGIKNHIA 409

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           VW A+L A     +LD+AR +A ++ +LE ++   YVML N+Y + G W  A  +RN M+
Sbjct: 410 VWGAVLGACRVHGNLDLARKAAEKLFELEPENTGRYVMLANIYAASGKWGGAKRIRNVMK 469

Query: 500 ERGLRKEAGCSWIEVEN 516
           ER L KE  CS IE+ N
Sbjct: 470 ERCLEKEPACSRIELRN 486



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 7/174 (4%)

Query: 23  QQLHCYIL---KSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79
           +Q+H  I+   KSG L NV+V  AL+  Y K   +  A  +F   P   VV+WN+LI+G+
Sbjct: 254 KQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPMRDVVTWNTLITGF 313

Query: 80  VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK-YSLERG 138
            Q+G   ++L +F  +  +++  +  +F   L+ C   G    G+ +   + + Y ++  
Sbjct: 314 AQNGHGEESLAVFRRMIEAKVEPNHVTFLGVLSGCNHAGLDNEGLQLVDLMERQYGVKPK 373

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMID---KDIISWNSVIAASARNGNLELA 189
                 LID+ G+   + +A+ +  ++ D     I  W +V+ A   +GNL+LA
Sbjct: 374 AEHYALLIDLLGRRNRLMEAMSLIEKVPDGIKNHIAVWGAVLGACRVHGNLDLA 427



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 47/102 (46%)

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M   DV      +S ++S       +     +H  +IK  L     +A+ L+D YSKCG 
Sbjct: 1   MLPNDVISSVEKYSFLISKCITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGC 60

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            E A   F  L  K   +WN +I+ Y++ G   +   LF+++
Sbjct: 61  EESAHKTFGDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKM 102


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/563 (28%), Positives = 270/563 (47%), Gaps = 78/563 (13%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           LH  ++K+G +++V+    L+  Y    +L+DAHK+   +PQPSVVS+N+++SGY + G 
Sbjct: 37  LHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNTILSGYFKFGL 96

Query: 85  YRKALNL-------------------------------FVELERSEIYADAYSFTSALAA 113
             +A+ L                               F+++  S +  D +++   +  
Sbjct: 97  VSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFTYAIIIPC 156

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISW 173
           C     L  G  +H+ IVK   +    I   L+ MY + G + DA  VF  M  + +++W
Sbjct: 157 C----DLGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVTW 212

Query: 174 NSVIAASARNGNLELAFGFLHRLPNP---------------------------------- 199
           N++I+  ++ G  + + G   +L                                     
Sbjct: 213 NAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVFEAMQVHSLIIE 272

Query: 200 -----DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
                D  + N ++N  ++ G +  A  +   +P  +  SW  I+ G++    + EA+ L
Sbjct: 273 RGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWL 332

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYS 313
           F +MQ  D+  + +TF  +L   A  +A   G   H  V+K G L A +VV SA++DMYS
Sbjct: 333 FYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYS 392

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV--RDLQPDSVT 371
           KCG++  A   F+ +  +++ +WN +I GYA+NG   K ++L+ ++  +    + P+ VT
Sbjct: 393 KCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVT 452

Query: 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431
           F+ VL ACSH  +  +  S YF+ M   + IKPT EH   M+ L+G+ G +  A+ +I  
Sbjct: 453 FVGVLCACSHNGLLKEGYS-YFKEMVDKHLIKPTAEHYTCMVDLLGRAGLLQEAEALILA 511

Query: 432 LGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA 491
           L      V+W ALL A     D+ + R +A  +   E  +   YV+L N YT  G W  A
Sbjct: 512 LPIKPDNVMWGALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNYVLLANSYTDIGEWGEA 571

Query: 492 SVMRNFMRERGLRKEAGCSWIEV 514
             +R  M  RG+ K AGCSW+E+
Sbjct: 572 VEIREVMEARGVEKTAGCSWVEI 594



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 187/419 (44%), Gaps = 60/419 (14%)

Query: 15  DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNS 74
           DLG+    QQ+H  I+K     + F+ T L+  Y ++  + DA K+F  +P   +V+WN+
Sbjct: 158 DLGFG---QQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVTWNA 214

Query: 75  LISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS 134
           +IS Y + G+  K++ LF +L R  I AD Y++   L        +   M +HS I++  
Sbjct: 215 MISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVFEAMQVHSLIIERG 274

Query: 135 LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH 194
                   N L+++Y KCG V  A  +F E+ D+D++SW  +I    ++G++E A    +
Sbjct: 275 FCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWLFY 334

Query: 195 RL------PN----------------------------------PDTISYNEVINGIAQF 214
           ++      PN                                   D +  + V++  ++ 
Sbjct: 335 QMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKC 394

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM---QSKDVPMDEYTFS 271
           G++ DA+     MP  + +SWN I+ GY       +AL L+ EM       +  +E TF 
Sbjct: 395 GEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVTFV 454

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA-----LLDMYSKCGQVEIADSMFR 326
            +L   +    L  G        K+ +D  ++  +A     ++D+  + G ++ A+++  
Sbjct: 455 GVLCACSHNGLLKEGY----SYFKEMVDKHLIKPTAEHYTCMVDLLGRAGLLQEAEALIL 510

Query: 327 SL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
           +L  + + V W A++     +GD+       E L T       +     VL A S+TDI
Sbjct: 511 ALPIKPDNVMWGALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNY----VLLANSYTDI 565



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 108/250 (43%), Gaps = 44/250 (17%)

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
           ++H+ ++K GL A +   + LL  Y     +  A  +   + + ++V++N +++GY + G
Sbjct: 36  VLHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNTILSGYFKFG 95

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFE----SMTKDYGIK 403
            +++ I+LF+   + RD    ++    VL+ C       + ++ + +    S+  D    
Sbjct: 96  LVSEAIKLFDG-TSKRDCHSWNI----VLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFTY 150

Query: 404 PTVEHCC-------------------------SMIRLMGQKGEVWRAQRMIRELGFGSYG 438
             +  CC                         +++R+  + GE+  A+++    G  S G
Sbjct: 151 AIIIPCCDLGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFD--GMPSRG 208

Query: 439 VV-WRALLSASGACSDLDVARISAAEVIKLEGDS--DYVYVMLCNLYTSHGNWDVASVMR 495
           +V W A++S        D + I     +  EG S  +Y Y ++ N + +   W V   M+
Sbjct: 209 LVTWNAMISCYSKYGRGDKS-IGLFRQLXREGISADEYTYAIVLNEFAA--RWQVFEAMQ 265

Query: 496 --NFMRERGL 503
             + + ERG 
Sbjct: 266 VHSLIIERGF 275


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 176/616 (28%), Positives = 294/616 (47%), Gaps = 109/616 (17%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + L H+L+A  +L         H  I  +GF SNVF+  AL+  Y +  SL +A  +
Sbjct: 160 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 219

Query: 61  FVEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVEL----------ERSEIYADAYSF 107
           F EI Q     V+SWNS++S +V+S     AL+LF ++          ERS+I     S 
Sbjct: 220 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII----SI 275

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-- 165
            + L ACG L ++     +H   ++      V + N LID Y KCG +E+A+ VF  M  
Sbjct: 276 VNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEF 335

Query: 166 ---------------------------------IDKDIISWNSVIAASARNG------NL 186
                                            I  D+++W +VIA  ++ G      NL
Sbjct: 336 KDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNL 395

Query: 187 ELAFGFLHRLPN-------------------------------------------PDTIS 203
                F   LPN                                            D + 
Sbjct: 396 FRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMV 455

Query: 204 YNEVINGIAQFGDIEDAIMILSSMP--SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           YN +I+  ++    + A  I   +P    N  +W  ++ G+       +AL LF EM S+
Sbjct: 456 YNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISE 515

Query: 262 D--VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL--DASIVVASALLDMYSKCGQ 317
              V  + YT S +L   A L+A+  G  IH+ V++      ++  VA+ L+DMYSKCG 
Sbjct: 516 PYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGD 575

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           V+ A  +F S+ +K+ ++W +M+TGY  +G  ++ +++F++++      PD +TFL VL 
Sbjct: 576 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKA-GFVPDDITFLVVLY 634

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           ACSH  +  D+   YF+SM+ DYG+ P  EH    I L+ + G + +A R ++++     
Sbjct: 635 ACSHCGM-VDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPT 693

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497
            VVW ALLSA    S++++A  +  +++++  ++D  Y ++ N+Y + G W   + +R+ 
Sbjct: 694 AVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHL 753

Query: 498 MRERGLRKEAGCSWIE 513
           M++ G++K  GCSW++
Sbjct: 754 MKKSGIKKRPGCSWVQ 769



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 184/413 (44%), Gaps = 97/413 (23%)

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
           P P+V  WN LI  +++ G+   A+N+   + R+    D ++    L ACG+L S + G 
Sbjct: 124 PSPAVW-WNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGS 182

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK---DIISWNSVIAASA 181
           A H  I     E  V I N L+ MY +CGS+E+A  +F E+  +   D+ISWNS+++A  
Sbjct: 183 AFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHV 242

Query: 182 RNGN----LEL---------------------------AFGFLHRLPN------------ 198
           ++ N    L+L                           A G L  +P             
Sbjct: 243 KSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG 302

Query: 199 --PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
             PD    N +I+  A+ G +E+A+ + + M   +  SWN+++ GY        A  LF 
Sbjct: 303 TFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFK 362

Query: 257 EMQSKDVPMDEYTFS-----------------------------------TMLSGIAGLS 281
            M+ +++P+D  T++                                   ++LS  A L 
Sbjct: 363 NMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLG 422

Query: 282 ALTWGMLIHSCVIKQ----------GLDASIVVASALLDMYSKCGQVEIADSMFR--SLC 329
           A + G  IH+  +K           G D  ++V +AL+DMYSKC   + A S+F    L 
Sbjct: 423 AFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLE 482

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVLAACSH 381
            +N+VTW  MI G+A+ GD    ++LF E +     + P++ T   +L AC+H
Sbjct: 483 ERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAH 535


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 158/557 (28%), Positives = 284/557 (50%), Gaps = 45/557 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL-SNVFVSTALMGFYRKIN-SLADAH 58
           PNEY    LLR+ S+  + T    +  ++LK+G+  S+V V  AL+  + K    +  A 
Sbjct: 143 PNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSAR 202

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
            +F ++   ++V+W  +I+ Y Q G    A++LF  L  SE   D ++ TS L+AC +L 
Sbjct: 203 MVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELE 262

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
              LG  +HS +++  L   V +   L+DMY K  +VE++  +F  M+  +++SW ++I+
Sbjct: 263 FFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALIS 322

Query: 179 ASARNGN----LELAFGFLHRLPNPDTISY------------------------------ 204
              ++      ++L    LH    P+  ++                              
Sbjct: 323 GYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLST 382

Query: 205 -----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                N +IN  A+ G +E A    + +   N  S+N+            E+ +   E++
Sbjct: 383 INCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFN--HEVE 440

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
              V    +T++ +LSG A +  +  G  IH+ ++K G   ++ + +AL+ MYSKCG  E
Sbjct: 441 HTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKE 500

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F  +  +N++TW ++I+G+A++G  TK +ELF ++  +  ++P+ VT++ VL+AC
Sbjct: 501 AALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEI-GVKPNEVTYIAVLSAC 559

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH  +  D+  ++F SM  ++ I P +EH   M+ L+G+ G +  A   I  + F +  +
Sbjct: 560 SHVGL-IDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADAL 618

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           VWR  L +     +  +   +A ++++ E      Y++L NLY S G WD  + +R  M+
Sbjct: 619 VWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMK 678

Query: 500 ERGLRKEAGCSWIEVEN 516
           ++ L KE G SWIEV+N
Sbjct: 679 QKKLIKETGYSWIEVDN 695



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 148/316 (46%), Gaps = 47/316 (14%)

Query: 111 LAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM--IDK 168
           L AC + G+L+LG  +H K++   L    V+ N LI +Y KCG  E+A+ +F  M    +
Sbjct: 46  LKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKR 105

Query: 169 DIISWNSVIAASARNGNLELA-FGFLHRLPNPDTISY-NE---------------VINGI 211
           D++SW+++I+  A N     A   FLH L     I Y NE                  G+
Sbjct: 106 DLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGL 165

Query: 212 AQFG---------------------------DIEDAIMILSSMPSPNSSSWNSILTGYVN 244
           A F                            DI+ A M+   M   N  +W  ++T Y  
Sbjct: 166 AIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQ 225

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV 304
              + +A+ LF  +   +   D++T +++LS    L   + G  +HS VI+ GL + + V
Sbjct: 226 LGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFV 285

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
              L+DMY+K   VE +  +F ++   N+++W A+I+GY ++    + I+LF  +     
Sbjct: 286 GCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLH-GH 344

Query: 365 LQPDSVTFLNVLAACS 380
           + P+  TF +VL AC+
Sbjct: 345 VTPNCFTFSSVLKACA 360



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 166/370 (44%), Gaps = 46/370 (12%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEI--PQPSVVSWNSLISGYVQS 82
           LH  ++ SG   +  +  +L+  Y K     +A  +F  +   +  +VSW+++IS +  +
Sbjct: 61  LHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANN 120

Query: 83  GKYRKALNLFVEL---ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS-LERG 138
               +AL  F+ +    R+ IY + Y FT+ L +C        G+AI + ++K    +  
Sbjct: 121 SMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSH 180

Query: 139 VVIANCLIDMYGKCG-SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
           V +   LIDM+ K G  ++ A  VF +M  K++++W  +I   ++ G L+ A     RL 
Sbjct: 181 VCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLL 240

Query: 198 ----NPDTISYNEVINGI-----------------------------------AQFGDIE 218
                PD  +   +++                                     A+   +E
Sbjct: 241 VSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVE 300

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
           ++  I ++M   N  SW ++++GYV   +  EA+ LF  M    V  + +TFS++L   A
Sbjct: 301 NSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACA 360

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            L     G  +H   IK GL     V ++L++MY++ G +E A   F  L  KNL+++N 
Sbjct: 361 SLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNT 420

Query: 339 MITGYARNGD 348
                A+  D
Sbjct: 421 AADANAKALD 430



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 152/308 (49%), Gaps = 15/308 (4%)

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP----DTISYNE 206
           K  S+  AI          +I  + ++ A  R+GNLEL     H+L +     D++  N 
Sbjct: 20  KFESLRKAISRLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNS 79

Query: 207 VINGIAQFGDIEDAIMILSSMPSPNSS--SWNSILTGYVNRNRVPEALHLFGEMQ--SKD 262
           +I   ++ GD E+A+ I  +M        SW++I++ + N +    AL  F  M   S++
Sbjct: 80  LITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRN 139

Query: 263 VPM-DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCG-QVE 319
           +   +EY F+ +L   +     T G+ I + ++K G  D+ + V  AL+DM++K G  ++
Sbjct: 140 IIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQ 199

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F  +  KNLVTW  MIT Y++ G L   ++LF +L  V +  PD  T  ++L+AC
Sbjct: 200 SARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRL-LVSEYTPDKFTLTSLLSAC 258

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
              ++ F  + +   S     G+   V   C+++ +  +   V  ++++   +   +  +
Sbjct: 259 --VELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNV-M 315

Query: 440 VWRALLSA 447
            W AL+S 
Sbjct: 316 SWTALISG 323



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 5/179 (2%)

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL--CRKNLVTWNAMI 340
           L  G L+H  +I  GL    V+ ++L+ +YSKCG  E A S+FR++   +++LV+W+A+I
Sbjct: 55  LELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAII 114

Query: 341 TGYARNGDLTKVIELF-EQLKTVRD-LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           + +A N   ++ +  F   L+  R+ + P+   F  +L +CS+  + F      F  + K
Sbjct: 115 SCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNP-LFFTTGLAIFAFLLK 173

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
                  V   C++I +  + G   ++ RM+ +       V W  +++       LD A
Sbjct: 174 TGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDA 232


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 154/513 (30%), Positives = 263/513 (51%), Gaps = 33/513 (6%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
            P+      +L+A + +      +Q+H +I K G LS++FVS +L+  Y    +L  A  +
Sbjct: 550  PDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSV 609

Query: 61   FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            F E+    VVSWNSLI GY Q  +++  L LF  ++   + AD  +    ++AC +LG  
Sbjct: 610  FDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDY 669

Query: 121  QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             +   +   I  Y +E  V + N L+D +G+ G ++ A  VF  M  ++I++ N++IAA 
Sbjct: 670  SMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAY 729

Query: 181  ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
            A+                                 DI  A  I   +P  +  SW+S+++
Sbjct: 730  AKGQ-------------------------------DIVSARKIFDQIPKKDLISWSSMIS 758

Query: 241  GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
            GY   N   +AL +F +MQ   V  D    ++++S  A L AL  G  +H  V +  + A
Sbjct: 759  GYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKA 818

Query: 301  SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
              ++ ++L+DMY KCG  + A  +F+ +  K+ ++WN++I G A NG   + + LF+ + 
Sbjct: 819  DTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAML 878

Query: 361  TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
            T    +P+ VTFL VL AC++  +  ++  ++FESM + Y ++P ++H   ++ L+G+ G
Sbjct: 879  T-EGFRPNGVTFLGVLIACANAKL-VEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAG 936

Query: 421  EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
            ++ +A R I E+      VVWR LL +     D+ +A I   ++ +LE  +   Y +L N
Sbjct: 937  QLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSN 996

Query: 481  LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
             Y S   W  A  +R  M +  +RK  GCS +E
Sbjct: 997  AYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 1029



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 127/453 (28%), Positives = 226/453 (49%), Gaps = 39/453 (8%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           +I+S   AH++F   P P    W++L+  Y      + AL LF    R     D Y+FT 
Sbjct: 40  QIHSQLIAHQVFDRRPTP----WHALLKAYSHGPHPQDALQLFRH-ARWHAADDTYAFTF 94

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
           AL AC  LG  +  M +H  +V+   E    +   L+++Y  CG + D+   F EM  K+
Sbjct: 95  ALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKN 154

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
            +SWN                                VI G A +G++E A ++   MP 
Sbjct: 155 AVSWNV-------------------------------VITGFAGWGEVEYARLLFERMPC 183

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            N  SW+ ++ GY    R  EA+ LF  M ++ +   E T   ++  ++ +  +  G  +
Sbjct: 184 RNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEAL 243

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC-RKNLVTWNAMITGYARNGD 348
           H    K+GL   + V ++L+D+Y+K G ++ +  +F  +  R+NLV+W ++I+G+A +G 
Sbjct: 244 HGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGL 303

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
             K +ELF  ++    ++P+ +TFL+VL ACSH  +    V+ +F+SM  +Y I P V+H
Sbjct: 304 SVKAVELFADMRRA-GIRPNRITFLSVLHACSHGGLVEQGVA-FFKSMIYEYNINPDVKH 361

Query: 409 CCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE 468
              +I ++G+ G +  A+++IR+        VWR LL       ++++   +  +++ LE
Sbjct: 362 FGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILALE 421

Query: 469 GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            +    +V+L N+ T    +  A ++R  + +R
Sbjct: 422 REFGGDFVVLSNMLTELRRFSDAEIVRKLVDQR 454



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 119/526 (22%), Positives = 240/526 (45%), Gaps = 73/526 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +  ++ A S++G     + LH Y  K G + +V V  +L+  Y KI S+ ++ ++
Sbjct: 219 PSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRV 278

Query: 61  FVE-IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F E + + ++VSW S+ISG+   G   KA+ LF ++ R+ I  +  +F S L AC   G 
Sbjct: 279 FDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGL 338

Query: 120 LQLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
           ++ G+A   S I +Y++   V    C+IDM G+ G + +A  +  +  ++ +   W +++
Sbjct: 339 VEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLL 398

Query: 178 AASARNGNLELA------FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
              ++ G +E+          L R    D +  + ++  + +F D E    ++    S  
Sbjct: 399 GCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNSVK 458

Query: 232 S--------------------------SSWNSILTGY-------VNRNRVPEALH----- 253
           S                           + + +L  Y       V  ++V + +      
Sbjct: 459 SFFNIVRMEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTF 518

Query: 254 ----LFGEMQSKDVPMDEYTFSTMLSGIAGL--SALTWGMLIHSC--------------- 292
               L   +   D P D   F     G  G+    LT+  ++ +C               
Sbjct: 519 LWNILIRGLAQSDAPADAIAFYKKAQG-GGMVPDNLTFPFILKACARINALNEGEQMHNH 577

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           + K GL + I V+++L+ +Y+ CG +  A S+F  +  K++V+WN++I GY++      +
Sbjct: 578 ITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDI 637

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412
           + LF+ ++    ++ D VT + V++AC  T +    +++Y     +DY I+  V    ++
Sbjct: 638 LALFKLMQN-EGVKADKVTMIKVVSAC--TRLGDYSMADYMVRYIEDYCIEVDVYLGNTL 694

Query: 413 IRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           +   G++G++  A+++   +   +  V   A+++A     D+  AR
Sbjct: 695 VDYFGRRGQLQSAEKVFFNMKVRNI-VTMNAMIAAYAKGQDIVSAR 739



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 127/534 (23%), Positives = 220/534 (41%), Gaps = 91/534 (17%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + Y     L+A + LGW   C QLH  +++ GF    +V TAL+  Y     LAD+   F
Sbjct: 88  DTYAFTFALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAF 147

Query: 62  VEIPQPSVVSWN-------------------------------SLISGYVQSGKYRKALN 90
            E+P  + VSWN                                +I GY ++ +  +A+ 
Sbjct: 148 EEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVA 207

Query: 91  LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
           LF  +    I     +  + + A   +G + +G A+H    K  L   V + N LID+Y 
Sbjct: 208 LFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYA 267

Query: 151 KCGSVEDAIGVFGEMID-KDIISWNSVIAASARNG----NLELAFGFLHRLPNPDTISYN 205
           K GS+++++ VF EM+D ++++SW S+I+  A +G     +EL          P+ I++ 
Sbjct: 268 KIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFL 327

Query: 206 EVINGIAQFGDIEDAIMILSSM-----PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            V++  +  G +E  +    SM      +P+   +  I+       R+ EA     E   
Sbjct: 328 SVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREA-----EQII 382

Query: 261 KDVPMD--EYTFSTMLSGIAGLSALTWG--MLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           +D P++     + T+L   +    +  G   +     +++      VV S +L    +  
Sbjct: 383 RDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFS 442

Query: 317 QVEIADSM---------FRSLCR----KNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363
             EI   +         F ++ R    K L  +  +   Y  +  ++KV      L++  
Sbjct: 443 DAEIVRKLVDQRNSVKSFFNIVRMEAIKRLHAYYIVSGLYNCHYAMSKV------LRSYA 496

Query: 364 DLQPDSV-------------TFL-NVL-AACSHTDIPFDKVSEYFES----MTKDYGIKP 404
            LQPD V             TFL N+L    + +D P D ++ Y ++    M  D    P
Sbjct: 497 ILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFP 556

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
            +   C+ I  + + GE  +    I +LG  S   V  +L+    AC +L  AR
Sbjct: 557 FILKACARINALNE-GE--QMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYAR 607


>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14820-like, partial [Brachypodium
           distachyon]
          Length = 498

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 152/510 (29%), Positives = 261/510 (51%), Gaps = 34/510 (6%)

Query: 11  RASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVV 70
           RA++   W    +  H   ++ G   + FV TAL+G Y     +A+A ++F  +P+  +V
Sbjct: 1   RAAARARWTDTVRGTHGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLV 60

Query: 71  SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKI 130
           +W  ++  Y  +  YR+ L L  +++RS +  D     + L+ CG    L+ G  IHS I
Sbjct: 61  AWGVMLDSYFNTQNYRETLLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYI 120

Query: 131 VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF 190
               +     +++ LI+MY  C  +E A  ++  M  KD++S  +++   A+N       
Sbjct: 121 QVSDIFVDARLSSALINMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKN------- 173

Query: 191 GFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE 250
                                   G IE A  I + M   +  SW+++++ Y   N+  E
Sbjct: 174 ------------------------GKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSE 209

Query: 251 ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLD 310
            L+LF +MQ   V  DE T  +++S  A + +L     IHS V   G    + + +AL+D
Sbjct: 210 VLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKILSICNALID 269

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370
           M+SKCG + +A +MF ++ RKN++TW +MI  +A +GD    + LF Q+K    ++P+ V
Sbjct: 270 MFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKG-EGVEPNGV 328

Query: 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
           TFL +L AC H  + ++  S  FE M ++Y I+P  EH   M+ LMG+   +  A  +I 
Sbjct: 329 TFLVLLYACCHAGLVYEGRS-LFECMLQEYRIEPKHEHYGCMVDLMGRAKLMQEAVDLIE 387

Query: 431 ELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490
            +       +W +LL+A     D+++   +A ++++L+ + D  YV+L N++   GNW+ 
Sbjct: 388 SMHIRPNVAIWGSLLAACWMHGDIELGEFAAKKILELDPNHDGAYVLLSNIHAKSGNWNN 447

Query: 491 ASVMRNFMRERGLRKEAGCSWIEVENVAAH 520
           A  +R  M+  G+ KE G SW+E+ N   H
Sbjct: 448 AQKLRVMMKVHGVSKETGYSWLEL-NCTVH 476



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 102/206 (49%), Gaps = 6/206 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +  ++ A +++G     + +H  +   GF   + +  AL+  + K  SL  A  M
Sbjct: 224 PDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKILSICNALIDMFSKCGSLTLALNM 283

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+ +V++W S+I+ +   G    AL LF +++   +  +  +F   L AC   G +
Sbjct: 284 FNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLLYACCHAGLV 343

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G ++   +++ Y +E       C++D+ G+   +++A+ +   M I  ++  W S++A
Sbjct: 344 YEGRSLFECMLQEYRIEPKHEHYGCMVDLMGRAKLMQEAVDLIESMHIRPNVAIWGSLLA 403

Query: 179 ASARNGNLEL----AFGFLHRLPNPD 200
           A   +G++EL    A   L   PN D
Sbjct: 404 ACWMHGDIELGEFAAKKILELDPNHD 429


>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
          Length = 545

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 165/518 (31%), Positives = 263/518 (50%), Gaps = 39/518 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNV-FVSTALMGFYRKINSLADAHKM 60
           N  V  HLL     +      Q++H   L  G   N   +S  +   Y +    ADA ++
Sbjct: 19  NRSVCHHLLTQCKTI---RELQRIHAQALTHGLHPNQQSISCKIFRSYAEFGRPADAGRL 75

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EIP P ++S+ SL+S +++   + KA+++F     S    D ++   AL+A G LG  
Sbjct: 76  FDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQ 135

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           ++G  +H  I +  L+  +V+ N L+DMY +CG  E A  VF  M+ KD ++W S++   
Sbjct: 136 RIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGY 195

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
            +   ++ A  F +++P   T+S                               W +++T
Sbjct: 196 MKCVGVDSALSFFYQMPMKSTVS-------------------------------WTALIT 224

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           G+V   +  +AL LFG+M  +    +  T   +LS  A + AL  G  IH    K     
Sbjct: 225 GHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATT 284

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF-EQL 359
           +I+V +AL+DMY+K G +  A S+F  +  K+  TW  MI+ +   G+  K +ELF + L
Sbjct: 285 NIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDML 344

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           ++   + P+SVTF++VL+ACSH  +   +  E F+ M + Y I P +EH   M+ L+G+ 
Sbjct: 345 RS--GILPNSVTFVSVLSACSHAGL-IQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRG 401

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G +  A+ +I  +      V+WR+LLSA  A  +  +A I+  E+IK E   D VYV+L 
Sbjct: 402 GLLEEAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAEIAGKEIIKREPGDDGVYVLLW 461

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           N+Y     W  A  MR  M  R + K+ GCSWIEV+ V
Sbjct: 462 NMYALSNRWKEALDMRKQMLSRKIYKKPGCSWIEVDGV 499



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 130/265 (49%), Gaps = 30/265 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  +L A +D+G     + +H Y  KS   +N+ V+ ALM  Y K  S+A A  +
Sbjct: 249 PNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSV 308

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+      +W ++IS +   G  RKA+ LF ++ RS I  ++ +F S L+AC   G +
Sbjct: 309 FEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLI 368

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           Q G  +  K+ + Y ++  +    C++D+ G+ G +E+A  +   M ++ DI+ W S+++
Sbjct: 369 QEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLS 428

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
           A   +GN  LA            I+  E+I    + GD  D + +L          WN  
Sbjct: 429 ACLAHGNDRLA-----------EIAGKEIIK--REPGD--DGVYVL---------LWNM- 463

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDV 263
              Y   NR  EAL +  +M S+ +
Sbjct: 464 ---YALSNRWKEALDMRKQMLSRKI 485



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 111/262 (42%), Gaps = 35/262 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +     L AS  LG       +H  I + G  S + V  AL+  Y +      A  +
Sbjct: 117 PDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTV 176

Query: 61  FVEIPQPSVVSWNSL-------------------------------ISGYVQSGKYRKAL 89
           F  +     V+W S+                               I+G+VQ  +  +AL
Sbjct: 177 FDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQAL 236

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
            LF ++       +  +    L+AC  +G+L LG AIH    K +    +++ N L+DMY
Sbjct: 237 ELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMY 296

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPNPDTISYN 205
            K GS+  A  VF E+  KD  +W ++I++    GN    +EL +  L     P+++++ 
Sbjct: 297 AKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFV 356

Query: 206 EVINGIAQFGDIEDAIMILSSM 227
            V++  +  G I++   +   M
Sbjct: 357 SVLSACSHAGLIQEGRELFDKM 378


>gi|347954460|gb|AEP33730.1| chlororespiratory reduction 21, partial [Capsella bursa-pastoris]
          Length = 820

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 147/524 (28%), Positives = 278/524 (53%), Gaps = 11/524 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +   L AS+++       Q H   + +G   +  + T+L+ FY K+  +  A  +
Sbjct: 261 PTRVTVSTCLSASANMAGVEEGTQCHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMI 320

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  VV+WN LISGYVQ G    A+ +   +   ++  D  +  + ++A  +  +L
Sbjct: 321 FDRMFEKDVVTWNLLISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENL 380

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +     ++SLE  +V+A+  +DMY KCGS+ DA  VF   ++KD+I WN+++AA 
Sbjct: 381 KLGKEVQCXCFRHSLESDIVLASTAMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAY 440

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDA----IMILSSMPSPNS 232
           A +G+   A    + +      P+ I++N +I    +  ++ +A    + + SS  +PN 
Sbjct: 441 AESGHSGEALRLFYEMQLESVPPNVITWNLIILSRLRNAEVNEAKEMFLQMQSSGITPNL 500

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
            SW +++ G V      EA+H   +MQ   +  + ++ +  LS  A L++  +G  IH  
Sbjct: 501 ISWTTMMNGMVQNGCSEEAIHFLRKMQESGMRPNAFSITVALSASANLASXHFGRSIHGY 560

Query: 293 VIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
           +I+     +S  + ++L+DMY+KCG +  A+ +F S     L  +NAMI+ YA  G++T+
Sbjct: 561 IIRNLRHSSSASIETSLVDMYAKCGDINKAERVFESKLSNELPLYNAMISAYALXGNVTE 620

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411
            + L+  L+ +   +PDS+TF ++L+AC+H     D+    F  M  ++G+KP +EH   
Sbjct: 621 AVALYRSLEDM-GXKPDSITFTSLLSACNHAG-DIDQAIRVFTDMVSNHGVKPCLEHYGL 678

Query: 412 MIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471
           ++ L     E  +A R++ E+ +     + ++L+++       ++    + ++++ E + 
Sbjct: 679 LVDLFASAKETDKALRLMEEMPYKPDXRMIQSLVASCNKQHKTELVDYLSRQLLETEPEX 738

Query: 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
              YV + N Y   G+WD     R  M+ +GL+K+ GCSWI+++
Sbjct: 739 SGNYVTISNAYAVEGSWDEVVKTREMMKAKGLKKKPGCSWIQIK 782



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 137/515 (26%), Positives = 241/515 (46%), Gaps = 49/515 (9%)

Query: 23  QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H  ILK+G  +  N ++ T L+ FY K + L  A  +F ++   +V SW ++I    
Sbjct: 79  KQIHARILKNGDLYARNEYIETKLVIFYAKCDDLEIAEVLFSKLRVRNVFSWAAIIGVKC 138

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + G    AL  FVE+  +EI+ D +   +   ACG L   + G  +H  ++K  LE  V 
Sbjct: 139 RMGLCEGALMGFVEMLENEIFPDNFVVPNVFKACGALQWSRFGRGVHGYVLKAGLEDCVF 198

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
           +A+ L DMYGKCG ++DA  VF E+ ++++++WN+++    +NG  E A   L  +    
Sbjct: 199 VASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKDG 258

Query: 197 --PNPDTISYN-------------------EVINGI--------------AQFGDIEDAI 221
             P   T+S                      ++NG+               + G IE A 
Sbjct: 259 VEPTRVTVSTCLSASANMAGVEEGTQCHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAE 318

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           MI   M   +  +WN +++GYV +  V +A+++   M+ + +  D  T +T++S  A   
Sbjct: 319 MIFDRMFEKDVVTWNLLISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTE 378

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  +     +  L++ IV+AS  +DMY+KCG +  A  +F S   K+L+ WN ++ 
Sbjct: 379 NLKLGKEVQCXCFRHSLESDIVLASTAMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLA 438

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            YA +G   + + LF +++ +  + P+ +T+ N++      +   ++  E F  M +  G
Sbjct: 439 AYAESGHSGEALRLFYEMQ-LESVPPNVITW-NLIILSRLRNAEVNEAKEMFLQM-QSSG 495

Query: 402 IKPTVEHCCSMIRLMGQKG---EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           I P +    +M+  M Q G   E     R ++E G           LSAS   +     R
Sbjct: 496 ITPNLISWTTMMNGMVQNGCSEEAIHFLRKMQESGMRPNAFSITVALSASANLASXHFGR 555

Query: 459 ISAAEVIK--LEGDSDYVYVMLCNLYTSHGNWDVA 491
                +I+      S  +   L ++Y   G+ + A
Sbjct: 556 SIHGYIIRNLRHSSSASIETSLVDMYAKCGDINKA 590



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/497 (23%), Positives = 220/497 (44%), Gaps = 95/497 (19%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +V+ ++ +A   L W  + + +H Y+LK+G    VFV+++L   Y K   L DA K+
Sbjct: 160 PDNFVVPNVFKACGALQWSRFGRGVHGYVLKAGLEDCVFVASSLADMYGKCGVLDDARKV 219

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EIP+ +VV+WN+L+ GYVQ+G   +A+ L  ++ +  +     + ++ L+A   +  +
Sbjct: 220 FDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKDGVEPTRVTVSTCLSASANMAGV 279

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN------ 174
           + G   H+  +   LE   ++   L++ Y K G +E A  +F  M +KD+++WN      
Sbjct: 280 EEGTQCHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFEKDVVTWNLLISGY 339

Query: 175 -----------------------------SVIAASARNGNLELA-----FGFLHRLPNPD 200
                                        ++++A+AR  NL+L        F H L + D
Sbjct: 340 VQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCXCFRHSLES-D 398

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +  +  ++  A+ G I DA  +  S    +   WN++L  Y       EAL LF EMQ 
Sbjct: 399 IVLASTAMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGHSGEALRLFYEMQL 458

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           + VP +                +TW ++I S +                    +  +V  
Sbjct: 459 ESVPPN---------------VITWNLIILSRL--------------------RNAEVNE 483

Query: 321 ADSMFRSL----CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           A  MF  +       NL++W  M+ G  +NG   + I    +++    ++P++ +    L
Sbjct: 484 AKEMFLQMQSSGITPNLISWTTMMNGMVQNGCSEEAIHFLRKMQE-SGMRPNAFSITVAL 542

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC------CSMIRLMGQKGEVWRAQRMIR 430
           +A ++        S +F      Y I+  + H        S++ +  + G++ +A+R+  
Sbjct: 543 SASANL------ASXHFGRSIHGYIIR-NLRHSSSASIETSLVDMYAKCGDINKAERVF- 594

Query: 431 ELGFGSYGVVWRALLSA 447
           E    +   ++ A++SA
Sbjct: 595 ESKLSNELPLYNAMISA 611



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 22/227 (9%)

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
           +P+S+S+   ++       + EAL L  EM  +++ +    +  +L G      L  G  
Sbjct: 21  APSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLCTGKQ 80

Query: 289 IHSCVIKQG--LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR- 345
           IH+ ++K G     +  + + L+  Y+KC  +EIA+ +F  L  +N+ +W A+I    R 
Sbjct: 81  IHARILKNGDLYARNEYIETKLVIFYAKCDDLEIAEVLFSKLRVRNVFSWAAIIGVKCRM 140

Query: 346 ---NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
               G L   +E+ E      ++ PD+    NV  AC             F      Y +
Sbjct: 141 GLCEGALMGFVEMLEN-----EIFPDNFVVPNVFKACGALQWS------RFGRGVHGYVL 189

Query: 403 KPTVEHCC----SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
           K  +E C     S+  + G+ G +  A+++  E+   +  V W AL+
Sbjct: 190 KAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV-VAWNALM 235


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 158/551 (28%), Positives = 281/551 (50%), Gaps = 60/551 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + L  ++RA S LG    C+ +HC+ L+ GF +++ V   L+G Y K+  + DA ++
Sbjct: 130 PDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQL 189

Query: 61  F-----------------------------------VEIPQPSVVSWNSLISGYVQSGKY 85
           F                                   +E  QP+ V+W SL+S + + G Y
Sbjct: 190 FDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHARCGLY 249

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
            + L LF  +    I   A +    L+ C  +  +  G  IH  +VK   E  + + N L
Sbjct: 250 DETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNAL 309

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG-FLHRLPNPDTISY 204
           I  YGK   + DA  VF E+ +K+++SWN++I++ A +G  + A+  FLH          
Sbjct: 310 IGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLH---------- 359

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
                   +  D +D      S+  PN  SW+++++G+  + R  ++L LF +MQ   V 
Sbjct: 360 -------MEKSDSDD-----HSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVM 407

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
            +  T S++LS  A L+AL  G  +H   I+  +  +I+V + L++MY KCG  +    +
Sbjct: 408 ANCVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLV 467

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
           F ++  ++L++WN++I GY  +G     +  F ++   R ++PD++TF+ +L+ACSH  +
Sbjct: 468 FDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRAR-MKPDNITFVAILSACSHAGL 526

Query: 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRAL 444
                   F+ M  ++ I+P VEH   M+ L+G+ G +  A  ++R +       VW AL
Sbjct: 527 -VAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRNMPIEPNEYVWGAL 585

Query: 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504
           L++     D+D+   +A++++ L+      +++L N+Y ++G WD ++ +R   R +GL+
Sbjct: 586 LNSCRMYKDMDIVEETASQILTLKSKITGSFMLLSNIYAANGRWDDSARVRVSARTKGLK 645

Query: 505 KEAGCSWIEVE 515
           K  G SWIEV 
Sbjct: 646 KIPGQSWIEVR 656



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 157/328 (47%), Gaps = 30/328 (9%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV---VSWNSLISGY 79
           +QLH  ++ +      F++  L+  Y +   L+ A K+F  IP  S+   + WNS+I   
Sbjct: 48  RQLHSQLVLTTAHRLPFLAARLIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIRAN 107

Query: 80  VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
           V  G ++ AL L+VE+ +     D ++    + AC  LGS  L   +H   ++      +
Sbjct: 108 VSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNHL 167

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            + N L+ MYGK G +EDA  +F  M  + I+SWN++++  A                N 
Sbjct: 168 HVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYA---------------LNR 212

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           D++  + V   +   G              PNS +W S+L+ +       E L LF  M+
Sbjct: 213 DSLGASRVFKRMELEG------------LQPNSVTWTSLLSSHARCGLYDETLELFKVMR 260

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           ++ + +     + +LS  A ++ + WG  IH  V+K G +  + V +AL+  Y K   + 
Sbjct: 261 TRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMG 320

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNG 347
            A  +F  +  KNLV+WNA+I+ YA +G
Sbjct: 321 DAHKVFLEIKNKNLVSWNALISSYAESG 348


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 157/544 (28%), Positives = 275/544 (50%), Gaps = 62/544 (11%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           ++RA + +G    C+ +H ++++ GF  N+ V   LMG Y KI  + DA K+F  +   S
Sbjct: 141 VIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRS 200

Query: 69  VVSWNSLISGYV-----------------------------------QSGKYRKALNLFV 93
            VSWN+++SGY                                    + G++ + + LF 
Sbjct: 201 CVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFG 260

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
            +    I A A +    L+    L +   G  IH  +VK   E  + + N LI +YGK G
Sbjct: 261 RMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHG 320

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQ 213
           +V  A  +F E+  K+I+SWN++I++ A  G  + AF    +L   D             
Sbjct: 321 NVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYP---------- 370

Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
                        M  PN  SW++++ G+ ++ +  EAL LF  MQ   V  +  T +++
Sbjct: 371 -------------MVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASV 417

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           LS  A L+AL  G  IH  V++  +D +I+V + L++MY+K G  +  + +F  +  K+L
Sbjct: 418 LSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDL 477

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           ++WN M+ GY  +G     I  F+Q+  ++D  +PD VTF+ VL+ACSH  +  +   E 
Sbjct: 478 ISWNTMVAGYGIHGLGENAIRTFDQM--IKDGFEPDGVTFVAVLSACSHAGLVAEG-REL 534

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
           F+ M K++ ++P +EH   M+ L+G+ G +  A ++++ +       VW ALL++     
Sbjct: 535 FDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHK 594

Query: 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           + +VA  +A+++  L  +    Y++L N+Y + G W+ ++ +R   + +GL+K  G SWI
Sbjct: 595 NTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWI 654

Query: 513 EVEN 516
           +V+ 
Sbjct: 655 QVKK 658



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 176/362 (48%), Gaps = 33/362 (9%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP---SVVSWNSLISGY 79
           QQ+H  I+ +G   + F++  ++  Y     ++DA ++F   P     +++ WNS++   
Sbjct: 51  QQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRAN 110

Query: 80  VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
           V  G   +AL ++  + +  + AD ++F   + AC  +GS +L  ++H  +V+   +  +
Sbjct: 111 VAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNL 170

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            + N L+ MYGK G ++DA  VF  M  +  +SWN++++  A N +              
Sbjct: 171 HVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCH------------ 218

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                          G  E   M+ S+   PN  +W S+L+ +    +  E + LFG M+
Sbjct: 219 ---------------GASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMR 263

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            + +       + +LS    L+A   G +IH  V+K G +  + V ++L+ +Y K G V 
Sbjct: 264 MRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVN 323

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD---LQPDSVTFLNVL 376
            A  +F  +  KN+V+WNA+I+ YA  G   +   +F QL+   +   ++P+ V++  V+
Sbjct: 324 AARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVI 383

Query: 377 AA 378
             
Sbjct: 384 GG 385



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 134/295 (45%), Gaps = 43/295 (14%)

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSS---WNSILTGYVNRNRVPEALHLFGEMQSKD 262
            V++  A FG + DA  +    P    S+   WNSIL   V      EAL ++  M+   
Sbjct: 71  RVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLG 130

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V  D +TF  ++   A + +      +H  V++ G   ++ V + L+ MY K G+++ A 
Sbjct: 131 VSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDAR 190

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F  +  ++ V+WN M++GYA N D     E+F  + +   L+P+ VT+ ++L+  SH 
Sbjct: 191 KVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSA-GLEPNLVTWTSLLS--SHA 247

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
                +  ++ E+M                  L G+          +R  G G+      
Sbjct: 248 -----RCGQHVETM-----------------ELFGR----------MRMRGIGATAEALA 275

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYV---MLCNLYTSHGNWDVASVM 494
            +LS S   +  D  ++    V+K  G  +Y++V   ++C LY  HGN + A ++
Sbjct: 276 VVLSVSVDLAAFDEGKVIHGYVVK-GGFENYLFVKNSLIC-LYGKHGNVNAARIL 328



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 95/190 (50%), Gaps = 2/190 (1%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N   +  +L   ++L      +++H ++++S    N+ V   L+  Y K  S  + + +F
Sbjct: 410 NSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVF 469

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            +I    ++SWN++++GY   G    A+  F ++ +     D  +F + L+AC   G + 
Sbjct: 470 EKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVA 529

Query: 122 LGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
            G  +  K++K + +E  +    C++D+ G+ G +++A  V   M ++ +   W +++ +
Sbjct: 530 EGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNS 589

Query: 180 SARNGNLELA 189
              + N E+A
Sbjct: 590 CRMHKNTEVA 599


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 150/509 (29%), Positives = 265/509 (52%), Gaps = 35/509 (6%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           LL+A S +    +  ++H    K GF+ + F+ T L+  Y     + DA  +F ++  P 
Sbjct: 127 LLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPD 186

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
            V+WN +I GY Q+G Y  AL LF ++  S++  D+    + L+ACG  G+L  G  IH 
Sbjct: 187 AVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHE 246

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
            +          +   LI+MY  CG+++ A  ++      D +S   +I ++A       
Sbjct: 247 FVKDNGYAIDSHLQTALINMYANCGAMDLARKIY------DGLSSKHLIVSTA------- 293

Query: 189 AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV 248
                             +++G A+ G ++DA  I   M   +   W+++++GY   ++ 
Sbjct: 294 ------------------MLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQP 335

Query: 249 PEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307
            EAL LF EM Q + VP D+ T  +++S  + + AL     IH+ V + G   ++ V +A
Sbjct: 336 QEALKLFDEMLQKRSVP-DQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNA 394

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           L+DMY+KCG +  A  +F ++ RKN+++W++MI  +A +G+    I+LF ++K V +++P
Sbjct: 395 LIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEV-NIEP 453

Query: 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQR 427
           + VTF+ VL AC H  +  ++  + F SM  ++GI PT EH   M+ L  +   + +A  
Sbjct: 454 NGVTFIGVLYACGHAGL-VEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIE 512

Query: 428 MIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGN 487
           +I  + F    ++W +L+SA     + ++   +A  +++LE D D   V+L N+Y     
Sbjct: 513 LIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKR 572

Query: 488 WDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           W+   ++R  M  +G+ KE   S IE+ N
Sbjct: 573 WNDVGLIRKSMSYKGISKEKASSRIEINN 601



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 150/351 (42%), Gaps = 58/351 (16%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+  +L  +L A    G  +Y + +H ++  +G+  +  + TAL+  Y    ++  A K+
Sbjct: 220 PDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKI 279

Query: 61  FVEIPQPSVVSWNSLISGYVQSG-------------------------------KYRKAL 89
           +  +    ++   +++SGY + G                               + ++AL
Sbjct: 280 YDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEAL 339

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
            LF E+ +     D  +  S ++AC  +G+L     IH+ + +    R + + N LIDMY
Sbjct: 340 KLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMY 399

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYN 205
            KCG++  A  VF  M  K++ISW+S+I A A +GN + A     R+      P+ +++ 
Sbjct: 400 AKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFI 459

Query: 206 EVINGIAQFGDIEDAIMILSSM-----PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            V+      G +E+   + SSM      SP    +  ++  Y   N + +A+ L   M  
Sbjct: 460 GVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETM-- 517

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
                    F+         + + WG L+ +C +    +     A  LL++
Sbjct: 518 --------PFAP--------NVIIWGSLMSACQVHGEAELGEFAAKRLLEL 552



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 90/161 (55%), Gaps = 4/161 (2%)

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPE-ALHLFGEMQSKDV-PMDEYTFSTMLSGIAGL 280
           + S +P+P++   N +L  +++R+  PE  + L+  +++ +   +D ++F ++L  ++ +
Sbjct: 76  VFSQIPNPHTHFSNQLLR-HLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKV 134

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           SA   G+ IH    K G      + + L+ MY+ C ++  A  +F  +C  + V WN +I
Sbjct: 135 SAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMII 194

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            GY +NG     + LFE +++  D++PDSV    VL+AC H
Sbjct: 195 DGYCQNGHYDDALRLFEDMRS-SDMKPDSVILCTVLSACGH 234


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 157/538 (29%), Positives = 272/538 (50%), Gaps = 47/538 (8%)

Query: 19  DTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISG 78
           D +   LH + +  G+ SNVFV +AL+  Y K + +  A K+F  +P+   V WN++I+G
Sbjct: 124 DKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMING 183

Query: 79  YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
            V++  +  ++ LF E+    +  D+ + T+ L A  +L  L++GM I    +K      
Sbjct: 184 LVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFC 243

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA--------- 189
             +   LI +Y KCG V  A  +F  +   D+I++N++I+    NG  E +         
Sbjct: 244 DYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLF 303

Query: 190 -------------------FGFLHR-------------LPNPD-TISYNEVINGIAQFGD 216
                              FG LH              + NP  + ++  + N   +  +
Sbjct: 304 SGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYN---KLNE 360

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           I+ A  +    P     +WN++++GY        A+ LF EM   +   +  T +T+LS 
Sbjct: 361 IDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSA 420

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            A L +L++G  +H  +  + L+ +I V++AL+DMY+KCG +  A  +F S+  KN VTW
Sbjct: 421 CAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTW 480

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           N MI GY  +G   + ++L+ ++  +    P +VTFL+VL ACSH  +   +  E F +M
Sbjct: 481 NTMIFGYGLHGYGHEALKLYNEMLHL-GYNPSAVTFLSVLYACSHAGL-VGEGEEIFHNM 538

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
              Y I+P +EH   M+ ++G+ G++ +A   I+++       VW  LL A     D D+
Sbjct: 539 VNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDI 598

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           AR+++  + +L+  S   YV+L N+Y+   N+  A+ +R  +++R L K  GC+ IEV
Sbjct: 599 ARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEV 656



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 110/215 (51%), Gaps = 4/215 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  +L A + LG  ++ + +H  I       N++VSTAL+  Y K  ++++A ++
Sbjct: 409 PNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQL 468

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + + + V+WN++I GY   G   +AL L+ E+        A +F S L AC   G +
Sbjct: 469 FDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLV 528

Query: 121 QLGMAI-HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G  I H+ + KY +E  +    C++D+ G+ G +E A+    +M ++     W +++ 
Sbjct: 529 GEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLG 588

Query: 179 ASARNGNLELAFGFLHRL--PNPDTISYNEVINGI 211
           A   + + ++A     RL   +P ++ Y  +++ I
Sbjct: 589 ACMIHKDTDIARLASERLFELDPGSVGYYVLLSNI 623



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 49/111 (44%)

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
           +T+ S I   S        H+  I  G    +   + L            A ++F S+ +
Sbjct: 13  NTLFSLINKASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPK 72

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            ++  +N ++ G++ N   +  I L+  L+   +L PD+ T+   +AACS+
Sbjct: 73  PDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSN 123


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  259 bits (661), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 164/535 (30%), Positives = 259/535 (48%), Gaps = 46/535 (8%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H Y++K GF +   V  AL+ FY K N + DA  +F E+PQ  ++SWNS+I G   +G 
Sbjct: 6   VHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGL 65

Query: 85  YRKALNLFVE--LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           Y KA+ LFV   LE  E+  D+ +  S + AC Q     +G  +H   V+  L     + 
Sbjct: 66  YDKAVELFVRMWLEGQEL--DSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLG 123

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
           N L+DMY  C        +F  M  K+++SW ++I +  R G+ +   G    +      
Sbjct: 124 NALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIR 183

Query: 199 PDTISYNEVI---------------------NGIAQF--------------GDIEDAIMI 223
           PD  +    +                     NGI +               G +E+A  I
Sbjct: 184 PDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFI 243

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +   ++ SWN+++ GY   N   EA  LF EM  +  P +  T + +L   A LS+L
Sbjct: 244 FDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQLRP-NAVTMACILPAAASLSSL 302

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H+  +++G      VA+AL+DMY KCG + +A  +F  L  KNL++W  MI GY
Sbjct: 303 ERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGY 362

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
             +G     I LFEQ+K    +QPD+ +F  +L ACSH+ +  D+   +F +M  ++ I+
Sbjct: 363 GMHGRGRDAIALFEQMKG-SGIQPDAGSFSAILYACSHSGLR-DEGWRFFNAMRNEHRIE 420

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           P ++H   M+ L+   G +  A   I  +       +W +LL       ++ +A   A  
Sbjct: 421 PKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEM 480

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVA 518
           V +LE ++   YV+L N+Y     W+    ++N +  RGLR+  GCSWIEV   A
Sbjct: 481 VFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKA 535



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 135/297 (45%), Gaps = 41/297 (13%)

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR 182
           G+ +H  +VKY       + N LI  Y K   +EDA+ VF EM  +DIISWNS+I   A 
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 183 NGNLELAFGFLHRL--------------PNPDTI-SYNEVINGIAQFGDIEDAIM----- 222
           NG  + A     R+                P  + S+   I G+     +   ++     
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 223 -------------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
                              I  +M   N  SW +++T Y       +   LF EM  + +
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGI 182

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             D +  ++ L   AG  +L  G  +H   I+ G++  + VA+AL++MY KCG +E A  
Sbjct: 183 RPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARF 242

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +F  + +K+ ++WN +I GY+R+    +   LF ++  +  L+P++VT   +L A +
Sbjct: 243 IFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEM--LLQLRPNAVTMACILPAAA 297



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 121/266 (45%), Gaps = 43/266 (16%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H Y +++G    + V+ ALM  Y K   + +A  +F  + +   +SWN+LI GY +S
Sbjct: 206 KSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRS 265

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
               +A  LF E+   ++  +A +    L A   L SL+ G  +H+  V+        +A
Sbjct: 266 NLANEAFTLFNEM-LLQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVA 324

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
           N L+DMY KCG++  A  +F  + +K++ISW  +IA    +G    A     ++      
Sbjct: 325 NALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQ 384

Query: 199 PDTISYNEV------------------------------------INGIAQFGDIEDAIM 222
           PD  S++ +                                    ++ +   G++++A  
Sbjct: 385 PDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYE 444

Query: 223 ILSSMP-SPNSSSWNSILTG-YVNRN 246
            + +MP  P+SS W S+L G  ++RN
Sbjct: 445 FIETMPIEPDSSIWVSLLRGCRIHRN 470



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 100/191 (52%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  +L A++ L      +++H Y ++ G+L + FV+ AL+  Y K  +L  A ++
Sbjct: 284 PNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRL 343

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   +++SW  +I+GY   G+ R A+ LF +++ S I  DA SF++ L AC   G  
Sbjct: 344 FDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLR 403

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G    + +  ++ +E  +    C++D+    G++++A      M I+ D   W S++ 
Sbjct: 404 DEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLR 463

Query: 179 ASARNGNLELA 189
               + N++LA
Sbjct: 464 GCRIHRNVKLA 474


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 157/544 (28%), Positives = 275/544 (50%), Gaps = 62/544 (11%)

Query: 9    LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
            ++RA + +G    C+ +H ++++ GF  N+ V   LMG Y KI  + DA K+F  +   S
Sbjct: 979  VIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRS 1038

Query: 69   VVSWNSLISGYV-----------------------------------QSGKYRKALNLFV 93
             VSWN+++SGY                                    + G++ + + LF 
Sbjct: 1039 CVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFG 1098

Query: 94   ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
             +    I A A +    L+    L +   G  IH  +VK   E  + + N LI +YGK G
Sbjct: 1099 RMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHG 1158

Query: 154  SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQ 213
            +V  A  +F E+  K+I+SWN++I++ A  G  + AF    +L   D             
Sbjct: 1159 NVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYP---------- 1208

Query: 214  FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
                         M  PN  SW++++ G+ ++ +  EAL LF  MQ   V  +  T +++
Sbjct: 1209 -------------MVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASV 1255

Query: 274  LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
            LS  A L+AL  G  IH  V++  +D +I+V + L++MY+K G  +  + +F  +  K+L
Sbjct: 1256 LSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDL 1315

Query: 334  VTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACSHTDIPFDKVSEY 392
            ++WN M+ GY  +G     I  F+Q+  ++D  +PD VTF+ VL+ACSH  +  +   E 
Sbjct: 1316 ISWNTMVAGYGIHGLGENAIRTFDQM--IKDGFEPDGVTFVAVLSACSHAGLVAEG-REL 1372

Query: 393  FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
            F+ M K++ ++P +EH   M+ L+G+ G +  A ++++ +       VW ALL++     
Sbjct: 1373 FDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHK 1432

Query: 453  DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
            + +VA  +A+++  L  +    Y++L N+Y + G W+ ++ +R   + +GL+K  G SWI
Sbjct: 1433 NTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWI 1492

Query: 513  EVEN 516
            +V+ 
Sbjct: 1493 QVKK 1496



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 176/362 (48%), Gaps = 33/362 (9%)

Query: 23   QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP---SVVSWNSLISGY 79
            QQ+H  I+ +G   + F++  ++  Y     ++DA ++F   P     +++ WNS++   
Sbjct: 889  QQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRAN 948

Query: 80   VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
            V  G   +AL ++  + +  + AD ++F   + AC  +GS +L  ++H  +V+   +  +
Sbjct: 949  VAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNL 1008

Query: 140  VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
             + N L+ MYGK G ++DA  VF  M  +  +SWN++++  A N +              
Sbjct: 1009 HVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCH------------ 1056

Query: 200  DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                           G  E   M+ S+   PN  +W S+L+ +    +  E + LFG M+
Sbjct: 1057 ---------------GASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMR 1101

Query: 260  SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
             + +       + +LS    L+A   G +IH  V+K G +  + V ++L+ +Y K G V 
Sbjct: 1102 MRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVN 1161

Query: 320  IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD---LQPDSVTFLNVL 376
             A  +F  +  KN+V+WNA+I+ YA  G   +   +F QL+   +   ++P+ V++  V+
Sbjct: 1162 AARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVI 1221

Query: 377  AA 378
              
Sbjct: 1222 GG 1223



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 134/294 (45%), Gaps = 43/294 (14%)

Query: 207  VINGIAQFGDIEDAIMILSSMPSPNSSS---WNSILTGYVNRNRVPEALHLFGEMQSKDV 263
            V++  A FG + DA  +    P    S+   WNSIL   V      EAL ++  M+   V
Sbjct: 910  VVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGV 969

Query: 264  PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
              D +TF  ++   A + +      +H  V++ G   ++ V + L+ MY K G+++ A  
Sbjct: 970  SADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARK 1029

Query: 324  MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
            +F  +  ++ V+WN M++GYA N D     E+F  + +   L+P+ VT+ ++L+  SH  
Sbjct: 1030 VFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSA-GLEPNLVTWTSLLS--SHA- 1085

Query: 384  IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
                +  ++ E+M                  L G+          +R  G G+       
Sbjct: 1086 ----RCGQHVETM-----------------ELFGR----------MRMRGIGATAEALAV 1114

Query: 444  LLSASGACSDLDVARISAAEVIKLEGDSDYVYV---MLCNLYTSHGNWDVASVM 494
            +LS S   +  D  ++    V+K  G  +Y++V   ++C LY  HGN + A ++
Sbjct: 1115 VLSVSVDLAAFDEGKVIHGYVVK-GGFENYLFVKNSLIC-LYGKHGNVNAARIL 1166



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 95/190 (50%), Gaps = 2/190 (1%)

Query: 2    NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
            N   +  +L   ++L      +++H ++++S    N+ V   L+  Y K  S  + + +F
Sbjct: 1248 NSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVF 1307

Query: 62   VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +I    ++SWN++++GY   G    A+  F ++ +     D  +F + L+AC   G + 
Sbjct: 1308 EKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVA 1367

Query: 122  LGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
             G  +  K++K + +E  +    C++D+ G+ G +++A  V   M ++ +   W +++ +
Sbjct: 1368 EGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNS 1427

Query: 180  SARNGNLELA 189
               + N E+A
Sbjct: 1428 CRMHKNTEVA 1437


>gi|413935435|gb|AFW69986.1| hypothetical protein ZEAMMB73_442164 [Zea mays]
          Length = 658

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 151/485 (31%), Positives = 251/485 (51%), Gaps = 46/485 (9%)

Query: 40  VSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE 99
           V  AL+  Y     L DA ++F  + +P  VSWN++I+GY ++G  + A  LF E+    
Sbjct: 194 VCNALLSGYAGYGYLKDAEELFGRMQRPDRVSWNAMITGYTRAGMMQVARRLFDEMPGK- 252

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159
              D  S+T+                                   ++  Y + G V+ A 
Sbjct: 253 ---DTVSWTA-----------------------------------IVRGYLQNGDVDAAW 274

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIED 219
            VF +M D+D+++WN+++     +  L+ A      +P+ D +S+N ++ G  Q GD++ 
Sbjct: 275 EVFQDMPDRDVLAWNTMMGGFVVSDRLDDALRLFADMPDRDLVSWNTILQGYIQQGDMDS 334

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
           A     SM   + +SWN++++GY +      AL L  EM       D+ T+S ++S  A 
Sbjct: 335 ATTWFRSMLEKDETSWNTVISGYKDEG----ALSLLSEMTRGGYRPDQATWSVVISVCAS 390

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
           L+AL  G ++H C IK G +   +V S+L+ MYSKCG +  A  +F  + +++ VTWNAM
Sbjct: 391 LAALGCGRMVHICTIKTGFEHDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAM 450

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKD 399
           I  YA +G   + + LF+++   R   PD  TFL+VL+AC+H    ++    YF SM +D
Sbjct: 451 IATYAYHGLAAEALALFDRMTKDR-FSPDHATFLSVLSACAHKGYLYEGC-HYFRSMQQD 508

Query: 400 YGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARI 459
           + + P  +H   M+ L+G+ G V +A    R++        W  L S+  A  D+ +  +
Sbjct: 509 WNLVPRSDHYSCMVDLLGRSGFVHQAYNFTRKIPSNLQINAWETLFSSCNAHGDIQLGEL 568

Query: 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE-NVA 518
            A  V++       +Y +L N+Y + G W  A+ +R  M+E+GL+KE GCSWIE++ +V 
Sbjct: 569 VAKNVLQSRPSDGGMYTLLSNIYAAKGMWSSAATVRGLMKEQGLKKETGCSWIELKGDVV 628

Query: 519 AHSSN 523
           + SSN
Sbjct: 629 SFSSN 633



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 116/224 (51%), Gaps = 7/224 (3%)

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
           ER V   NC++    + G + DA GVF  M  ++ +SW +++   AR G +  A     R
Sbjct: 64  ERNVFTWNCMVSGLARNGLLADARGVFDAMPSRNSVSWAALLTGYARRGRVAEARDLFDR 123

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           +P+ + +S+N +++G  + G ++ A  +  +MP+ +  SW  +++GY+ R R  EA  +F
Sbjct: 124 MPHRNVVSWNAMVSGYLRNGMVDRARELFDAMPARDDVSWLMMVSGYMRRKRFREAREIF 183

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
               S   P      + +LSG AG   L     +   + +       V  +A++  Y++ 
Sbjct: 184 DRAPS---PPPTSVCNALLSGYAGYGYLKDAEELFGRMQR----PDRVSWNAMITGYTRA 236

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           G +++A  +F  +  K+ V+W A++ GY +NGD+    E+F+ +
Sbjct: 237 GMMQVARRLFDEMPGKDTVSWTAIVRGYLQNGDVDAAWEVFQDM 280



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 162/365 (44%), Gaps = 46/365 (12%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD 103
           +M  +R    +  A ++F E+ + +V +WN ++SG  ++G    A  +F  +       +
Sbjct: 43  IMAHFRA-GRVGAARRVFDEMRERNVFTWNCMVSGLARNGLLADARGVFDAMPSR----N 97

Query: 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
           + S+ + L    + G +     +  ++      R VV  N ++  Y + G V+ A  +F 
Sbjct: 98  SVSWAALLTGYARRGRVAEARDLFDRMP----HRNVVSWNAMVSGYLRNGMVDRARELFD 153

Query: 164 EMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISY-NEVINGIAQFGDIEDAIM 222
            M  +D +SW  +++   R      A     R P+P   S  N +++G A +G ++DA  
Sbjct: 154 AMPARDDVSWLMMVSGYMRRKRFREAREIFDRAPSPPPTSVCNALLSGYAGYGYLKDAEE 213

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG------ 276
           +   M  P+  SWN+++TGY     +  A  LF EM  KD      +++ ++ G      
Sbjct: 214 LFGRMQRPDRVSWNAMITGYTRAGMMQVARRLFDEMPGKDT----VSWTAIVRGYLQNGD 269

Query: 277 ----------IAGLSALTWGMLIHSCVIKQGLDAS-----------IVVASALLDMYSKC 315
                     +     L W  ++   V+   LD +           +V  + +L  Y + 
Sbjct: 270 VDAAWEVFQDMPDRDVLAWNTMMGGFVVSDRLDDALRLFADMPDRDLVSWNTILQGYIQQ 329

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G ++ A + FRS+  K+  +WN +I+GY   G L+ + E+     T    +PD  T+  V
Sbjct: 330 GDMDSATTWFRSMLEKDETSWNTVISGYKDEGALSLLSEM-----TRGGYRPDQATWSVV 384

Query: 376 LAACS 380
           ++ C+
Sbjct: 385 ISVCA 389



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 106/219 (48%), Gaps = 32/219 (14%)

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP 228
           D+  WNS I A  R G +  A      +   +  ++N +++G+A+ G + DA  +  +MP
Sbjct: 35  DVGRWNSDIMAHFRAGRVGAARRVFDEMRERNVFTWNCMVSGLARNGLLADARGVFDAMP 94

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG------------ 276
           S NS SW ++LTGY  R RV EA  LF  M  ++V     +++ M+SG            
Sbjct: 95  SRNSVSWAALLTGYARRGRVAEARDLFDRMPHRNV----VSWNAMVSGYLRNGMVDRARE 150

Query: 277 ----IAGLSALTWGMLIHSCVIKQGLDAS------------IVVASALLDMYSKCGQVEI 320
               +     ++W M++   + ++    +              V +ALL  Y+  G ++ 
Sbjct: 151 LFDAMPARDDVSWLMMVSGYMRRKRFREAREIFDRAPSPPPTSVCNALLSGYAGYGYLKD 210

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           A+ +F  + R + V+WNAMITGY R G +     LF+++
Sbjct: 211 AEELFGRMQRPDRVSWNAMITGYTRAGMMQVARRLFDEM 249



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 103/233 (44%), Gaps = 35/233 (15%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG------------- 83
           +V     +MG +   + L DA ++F ++P   +VSWN+++ GY+Q G             
Sbjct: 284 DVLAWNTMMGGFVVSDRLDDALRLFADMPDRDLVSWNTILQGYIQQGDMDSATTWFRSML 343

Query: 84  --------------KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
                         K   AL+L  E+ R     D  +++  ++ C  L +L  G  +H  
Sbjct: 344 EKDETSWNTVISGYKDEGALSLLSEMTRGGYRPDQATWSVVISVCASLAALGCGRMVHIC 403

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
            +K   E   ++ + LI MY KCG + +A  VF  ++ +D ++WN++IA  A +G    A
Sbjct: 404 TIKTGFEHDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEA 463

Query: 190 FGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
                R+     +PD  ++  V++  A  G + +      SM       WN +
Sbjct: 464 LALFDRMTKDRFSPDHATFLSVLSACAHKGYLYEGCHYFRSM----QQDWNLV 512



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 4/170 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H   +K+GF  +  V ++L+  Y K   + +A ++F  I Q   V+WN++I+ Y   
Sbjct: 398 RMVHICTIKTGFEHDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYH 457

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA-IHSKIVKYSLERGVVI 141
           G   +AL LF  + +     D  +F S L+AC   G L  G     S    ++L      
Sbjct: 458 GLAAEALALFDRMTKDRFSPDHATFLSVLSACAHKGYLYEGCHYFRSMQQDWNLVPRSDH 517

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKD--IISWNSVIAASARNGNLELA 189
            +C++D+ G+ G V  A   F   I  +  I +W ++ ++   +G+++L 
Sbjct: 518 YSCMVDLLGRSGFVHQAYN-FTRKIPSNLQINAWETLFSSCNAHGDIQLG 566


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 148/532 (27%), Positives = 266/532 (50%), Gaps = 42/532 (7%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H  ++K G  SNV +   L+  Y +     DA  +F  + +  ++SWNS+++ YVQ GK
Sbjct: 420 IHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGK 479

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
               L +  EL +     +  +F SALAAC     L     +H+ I+       +++ N 
Sbjct: 480 CLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNA 539

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG------------- 191
           L+ MYGK G + +A  V   M   D ++WN++I   A N     A               
Sbjct: 540 LVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPAN 599

Query: 192 -----------------FLHRLP----------NPDTISYNEVINGIAQFGDIEDAIMIL 224
                              H +P            D    N +I   A+ GD+  +  I 
Sbjct: 600 YITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIF 659

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             + + +  +WN+++    +     EAL +FGEM++  V +D+++FS  L+  A L+ L 
Sbjct: 660 DGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLE 719

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  +H  VIK G ++ + V +A +DMY KCG++     M      ++ ++WN +I+ +A
Sbjct: 720 EGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFA 779

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           R+G   K  E F ++  +   +PD VTF+++L+AC+H  +  D+   Y++SMT+++G+ P
Sbjct: 780 RHGCFQKARETFHEMLKLGP-KPDHVTFVSLLSACNHGGL-VDEGLAYYDSMTREFGVFP 837

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
            +EHC  +I L+G+ G +  A+  I+E+      + WR+LL+A     +L++AR +A  +
Sbjct: 838 GIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHL 897

Query: 465 IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           ++L+   D  YV+  N+  + G W+    +R  M    ++K+  CSW+++++
Sbjct: 898 LELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKD 949



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 215/423 (50%), Gaps = 41/423 (9%)

Query: 1   PNEYVLFHLLRASSDLGW-DTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           PN +++  L+ A S  G+      Q+H +++K+G L +V+V TAL+ FY  I  + +A K
Sbjct: 193 PNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQK 252

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F E+P  +VVSW SL+ GY  SG   + LN++  + +  +  +  +F +  ++CG L  
Sbjct: 253 LFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLED 312

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
             LG  +   I++Y  E  V +AN LI M+    SVE+A  VF  M + DIISWN++I+A
Sbjct: 313 QVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISA 372

Query: 180 SARNGNLELA---FGFLHRLPNP----------------DTISYNEVINGI--------- 211
            A +G    +   F ++  L N                 D + +   I+G+         
Sbjct: 373 YAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSN 432

Query: 212 -----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                      ++ G  EDA ++  +M   +  SWNS++  YV   +  + L +  E+  
Sbjct: 433 VCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQ 492

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
               M+  TF++ L+  +    L    ++H+ +I  G    ++V +AL+ MY K G +  
Sbjct: 493 MGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMME 552

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  + +++ + + VTWNA+I G+A N +  + ++ ++ ++  + +  + +T ++VL ACS
Sbjct: 553 AKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIRE-KGIPANYITMVSVLGACS 611

Query: 381 HTD 383
             D
Sbjct: 612 APD 614



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/500 (22%), Positives = 235/500 (47%), Gaps = 45/500 (9%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV 69
           L+  S++      + LH + +       +F +  L+  Y K  ++  A  +F E+   + 
Sbjct: 101 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 160

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL-QLGMAIHS 128
            SW++++SGYV+ G Y +A+ LF ++    +  + +   S + AC + G +   G  +H 
Sbjct: 161 ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHG 220

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
            +VK  +   V +   L+  YG  G V +A  +F EM D +++SW S++   + +GN   
Sbjct: 221 FVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGE 280

Query: 189 AFGFLHRLPN--------------------------------------PDTISY-NEVIN 209
                 R+                                         D++S  N +I+
Sbjct: 281 VLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLIS 340

Query: 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
             + F  +E+A  +   M   +  SWN++++ Y +     E+L  F  M+      +  T
Sbjct: 341 MFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTT 400

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
            S++LS  + +  L WG  IH  V+K GLD+++ + + LL +YS+ G+ E A+ +F+++ 
Sbjct: 401 LSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMT 460

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389
            ++L++WN+M+  Y ++G     +++  +L  +  +  + VTF + LAACS+ +   +  
Sbjct: 461 ERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVM-NHVTFASALAACSNPECLIE-- 517

Query: 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
           S+   ++    G    +    +++ + G+ G +  A+++++ +      V W AL+    
Sbjct: 518 SKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDR-VTWNALIGGHA 576

Query: 450 ACSDLDVARISAAEVIKLEG 469
              + + A + A ++I+ +G
Sbjct: 577 ENEEPNEA-VKAYKLIREKG 595



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 115/230 (50%), Gaps = 11/230 (4%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP-- 67
           L A+++L      QQLH  ++K GF S++ V+ A M  Y K   + D  KM   +PQP  
Sbjct: 709 LAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKM---LPQPIN 765

Query: 68  -SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI 126
            S +SWN LIS + + G ++KA   F E+ +     D  +F S L+AC   G +  G+A 
Sbjct: 766 RSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAY 825

Query: 127 HSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNG 184
           +  + + + +  G+    C+ID+ G+ G +  A G   EM +  + ++W S++AA   +G
Sbjct: 826 YDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHG 885

Query: 185 NLELAFG---FLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
           NLELA      L  L   D  +Y    N  A  G  ED   +   M S N
Sbjct: 886 NLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNN 935


>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 974

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 167/558 (29%), Positives = 288/558 (51%), Gaps = 51/558 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+    +  A + L +  +  QLH  ++K+ F SN+FV+ AL+  Y K  +L +A K 
Sbjct: 408 PDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQ 467

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     VSWN++I GYVQ     +A  +F  +  + +  D  S  S ++AC  +  L
Sbjct: 468 FELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQEL 527

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G   H  +VK  L+      + LIDMY KCG V  A  VF  M  ++++S N++IA  
Sbjct: 528 KRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGY 587

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVING----------------IAQFGDIEDA 220
              G+LE A      +      P  +++  +++G                + ++G +  +
Sbjct: 588 TM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSS 646

Query: 221 IMI--------------------LSSMPSPNS-SSWNSILTGYVNRNRVPEALHLFGEMQ 259
            M+                     S +  P     W ++++GY  +N   +AL  +  M+
Sbjct: 647 EMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMR 706

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           S ++  D+  F+++L   AG+S+L  G  IHS +   G +   V  S+L+DMY+KCG V+
Sbjct: 707 SDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVK 766

Query: 320 IADSMFRSLCRK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            +  +FR + R+ N+++WN+MI G A+NG   + +E+F+Q++  + + PD VTFL VL+A
Sbjct: 767 GSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQ-QSIIPDEVTFLGVLSA 825

Query: 379 CSHTDIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           CSH      +VSE    F+ M  +Y ++P V+H   M+ ++G+ G +  A+  I +LG  
Sbjct: 826 CSHA----GRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCK 881

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
           +  ++W  LL A     D    + +A ++++L+  S   YV+L ++Y    NW  A  +R
Sbjct: 882 ADPMLWSTLLGACRKHGDEVRGKRAADKLMELKPQSSSSYVLLSSIYAESENWSGAVSLR 941

Query: 496 NFMRERGLRKEAGCSWIE 513
             M+ +G++K  G SWIE
Sbjct: 942 REMKLKGVKKLPGYSWIE 959



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 185/352 (52%), Gaps = 10/352 (2%)

Query: 33  GFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF 92
           G L NV V       Y K  ++  A K F  + +  V +WNS++S Y+  G +   +  F
Sbjct: 76  GLLGNVIVD-----LYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSF 130

Query: 93  VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC 152
           V +   E+  + ++F   L+AC  L  +  G  +H  + K            LIDMY KC
Sbjct: 131 VCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKC 190

Query: 153 GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVI 208
             + DA  VF   ++ D +SW ++IA   R+G    A     R+      PD I+   V+
Sbjct: 191 RYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVV 250

Query: 209 NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268
           N     G + DA  + + +P+PN  +WN +++G+  R    EA+  F E++   +     
Sbjct: 251 NAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRS 310

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           +  ++LS IA LS L +G ++H+   K+GLD ++ V SAL++MY+KC +++ A  +F SL
Sbjct: 311 SLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSL 370

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             +N+V WNAM+ G+A+NG   +V+E F  +K     QPD  TF ++ +AC+
Sbjct: 371 GERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKR-HGPQPDEFTFTSIFSACA 421



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 226/478 (47%), Gaps = 45/478 (9%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           +L A + L    Y   +H    K G   NV+V +AL+  Y K + +  A ++F  + + +
Sbjct: 315 VLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERN 374

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           +V WN+++ G+ Q+G  ++ +  F  ++R     D ++FTS  +AC  L  L  G  +H+
Sbjct: 375 IVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHT 434

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
            ++K      + +AN L+DMY K G++++A   F  M   D +SWN++I    +    + 
Sbjct: 435 VMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDE 494

Query: 189 AFGFLHRLPN----PDTISYNEVINGIAQFGDIED------------------------- 219
           AF    R+ +    PD +S   +++  A   +++                          
Sbjct: 495 AFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLID 554

Query: 220 ----------AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
                     A  +  SMPS N  S N+++ GY     + EA+HLF E+Q   +   E T
Sbjct: 555 MYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYT-MGHLEEAIHLFQEIQMVGLKPTEVT 613

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           F+ +L G  G   L  G  IH  V+K G L +S +V  +LL +Y    +   ++++F  L
Sbjct: 614 FAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSEL 673

Query: 329 -CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387
              K LV W A+I+GYA+     K ++ ++ +++  ++ PD   F +VL AC+   +   
Sbjct: 674 QYPKGLVVWTALISGYAQQNHHEKALQFYQHMRS-DNILPDQAAFASVLRACA--GMSSL 730

Query: 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
           +  +   S+    G       C S+I +  + G+V  + ++ RE+   +  + W +++
Sbjct: 731 QNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMI 788



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 187/392 (47%), Gaps = 15/392 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+    +L A S L    + +Q+HC + K+GF    F    L+  Y K   L DA  +
Sbjct: 140 PNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLV 199

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F        VSW +LI+GYV+ G   +A+ +F  ++R     D  +  + + A   LG L
Sbjct: 200 FDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRL 259

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII----SWNSV 176
                + ++I   +    VV  N +I  + K G  E+AI  F E+    +     S  SV
Sbjct: 260 ADARKLFTQIPNPN----VVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSV 315

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYN-----EVINGIAQFGDIEDAIMILSSMPSPN 231
           ++A A    L      +H     + +  N      ++N  A+   ++ A  + +S+   N
Sbjct: 316 LSAIASLSMLNYG-SMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERN 374

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              WN++L G+       E +  F  M+      DE+TF+++ S  A L  L +G  +H+
Sbjct: 375 IVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHT 434

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
            +IK    +++ VA+AL+DMY+K G ++ A   F  +   + V+WNA+I GY +     +
Sbjct: 435 VMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDE 494

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
              +F ++ +   + PD V+  ++++AC++  
Sbjct: 495 AFFMFRRMVS-NGVLPDEVSLASIVSACANVQ 525



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 63/110 (57%), Gaps = 2/110 (1%)

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
           L AL+   +IHS  +K G+    ++ + ++D+Y KCG V+ A   F  L +K++  WN++
Sbjct: 54  LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSV 113

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIPFDK 388
           ++ Y  +G    V++ F  +    +++P+  TF  VL+ACS   D+ F +
Sbjct: 114 LSMYLDHGLFATVVQSFVCMWN-HEVRPNEFTFAMVLSACSGLQDVNFGR 162


>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
          Length = 545

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 165/518 (31%), Positives = 263/518 (50%), Gaps = 39/518 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNV-FVSTALMGFYRKINSLADAHKM 60
           N  V  HLL     +      Q++H   L  G   N   +S  +   Y +    ADA ++
Sbjct: 19  NRSVCHHLLTQCKTI---RELQRIHAQALTHGLHPNQQSISCKIFRSYAEFGRPADAGRL 75

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EIP P ++S+ SL+S +++   + KA+++F     S    D ++   AL+A G LG  
Sbjct: 76  FDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQ 135

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           ++G  +H  I +  L+  +V+ N L+DMY +CG  E A  VF  M+ KD ++W S++   
Sbjct: 136 RIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGY 195

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
            +   ++ A  F +++P   T+S                               W +++T
Sbjct: 196 MKCVGVDSALSFFYQMPMKSTVS-------------------------------WTALIT 224

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           G+V   +  +AL LFG+M  +    +  T   +LS  A + AL  G  IH    K     
Sbjct: 225 GHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATT 284

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF-EQL 359
           +I+V +AL+DMY+K G +  A S+F  +  K+  TW  MI+ +   G+  K +ELF + L
Sbjct: 285 NIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDML 344

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           ++   + P+SVTF++VL+ACSH  +   +  E F+ M + Y I P +EH   M+ L+G+ 
Sbjct: 345 RS--GILPNSVTFVSVLSACSHAGL-IQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRG 401

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G +  A+ +I  +      V+WR+LLSA  A  +  +A I+  E+IK E   D VYV+L 
Sbjct: 402 GLLEEAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAEIAGMEIIKREPGDDGVYVLLW 461

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           N+Y     W  A  MR  M  R + K+ GCSWIEV+ V
Sbjct: 462 NMYALSNRWKEALDMRKQMLSRKIYKKPGCSWIEVDGV 499



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 109/208 (52%), Gaps = 6/208 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  +L A +D+G     + +H Y  KS   +N+ V+ ALM  Y K  S+A A  +
Sbjct: 249 PNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSV 308

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+      +W ++IS +   G  RKA+ LF ++ RS I  ++ +F S L+AC   G +
Sbjct: 309 FEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLI 368

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           Q G  +  K+ + Y ++  +    C++D+ G+ G +E+A  +   M ++ DI+ W S+++
Sbjct: 369 QEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLS 428

Query: 179 ASARNGNLELA----FGFLHRLPNPDTI 202
           A   +GN  LA       + R P  D +
Sbjct: 429 ACLAHGNDRLAEIAGMEIIKREPGDDGV 456



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 111/262 (42%), Gaps = 35/262 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +     L AS  LG       +H  I + G  S + V  AL+  Y +      A  +
Sbjct: 117 PDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTV 176

Query: 61  FVEIPQPSVVSWNSL-------------------------------ISGYVQSGKYRKAL 89
           F  +     V+W S+                               I+G+VQ  +  +AL
Sbjct: 177 FDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQAL 236

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
            LF ++       +  +    L+AC  +G+L LG AIH    K +    +++ N L+DMY
Sbjct: 237 ELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMY 296

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPNPDTISYN 205
            K GS+  A  VF E+  KD  +W ++I++    GN    +EL +  L     P+++++ 
Sbjct: 297 AKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFV 356

Query: 206 EVINGIAQFGDIEDAIMILSSM 227
            V++  +  G I++   +   M
Sbjct: 357 SVLSACSHAGLIQEGRELFDKM 378


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 149/517 (28%), Positives = 265/517 (51%), Gaps = 38/517 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P   V  HL+    + G D   ++    +     + N++    ++  Y K+  + +A K+
Sbjct: 96  PTTIVANHLIGMYFECGRDVEARK----VFDKMSVRNLYSWNHMLAGYAKLGDVNNARKL 151

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  VVSWN+++  Y + G + +A+ L+ +  R ++  +A+SF   L  C +L  L
Sbjct: 152 FDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKEL 211

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           QL   +H +++       +V+++ ++D Y KCG +  A  +F EM+ KDI +W ++++  
Sbjct: 212 QLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVS-- 269

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                                        G A++GD+  A  +   MP  N  SW+++++
Sbjct: 270 -----------------------------GYAKWGDMNSASELFHQMPEKNPVSWSALIS 300

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GY   +   EAL  F +M    +  ++YTFS+ L   A ++AL  G  +H  +I+     
Sbjct: 301 GYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRC 360

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRK-NLVTWNAMITGYARNGDLTKVIELFEQL 359
           + +V S+L+DMYSKCG +E +  +F  +  K ++V WN MI+  A+NG   K +++F  +
Sbjct: 361 NTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDM 420

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
                L+PD +TF+ +L+ACSH+ +  + +  +F++MT D+G+ P  EH   +I L+G+ 
Sbjct: 421 -VESGLKPDRITFIVILSACSHSGLVQEGL-RFFKAMTYDHGVFPDQEHYSCLIDLLGRA 478

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G        +  +       VW ALL      +++++ R  A  VI+L+  S   YV L 
Sbjct: 479 GCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLA 538

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +LY   G W+    +R  M E+ +RKE G SWI+V N
Sbjct: 539 SLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGN 575


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 168/544 (30%), Positives = 269/544 (49%), Gaps = 50/544 (9%)

Query: 20  TYCQQL----HCYILKSGFLSNV---FVSTALMGFYRKINSLADAHKMFVEIPQPSVVSW 72
           T C +L    H  I+K+  L N    F+   L+  Y K++    A  +    P  SVV+W
Sbjct: 19  TQCSRLGRAAHAQIIKT--LDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTW 76

Query: 73  NSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132
            +LI+G VQ+G++  AL  F  + R  I  + ++F  A  A G L S  +G  +H+  VK
Sbjct: 77  TALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVK 136

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG- 191
                 V +     DMY K G  E+A  +F EM +++I +WN+ ++ S   G  + A   
Sbjct: 137 AGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTA 196

Query: 192 ---FLHRLPNPDTISYNEVINGIA----------------QFGDIED------------- 219
              F H    P+ I++   +N  A                Q G   D             
Sbjct: 197 FIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGK 256

Query: 220 ------AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
                 + +I S +  PN  SW S++  YV  +   +A  +F   + + +   ++  S++
Sbjct: 257 CHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSV 316

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           LS  AGLS L  G  +H+  +K  +  +I V SAL+DMY KCG +E A+  F  +  +NL
Sbjct: 317 LSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNL 376

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKT-VRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           VTWNAMI GYA  G     + LF+++      + P+ VTF+ VL+ACS      +   E 
Sbjct: 377 VTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAG-SVNVGMEI 435

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
           FESM   YGI+P  EH   ++ L+G+ G V +A + I+++       VW ALL AS    
Sbjct: 436 FESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFG 495

Query: 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
             ++ +++A  + +L+      +V+L N++ + G W+ A+++R  M++ G++K AGCSWI
Sbjct: 496 KSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWI 555

Query: 513 EVEN 516
              N
Sbjct: 556 TAGN 559



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 166/383 (43%), Gaps = 43/383 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++      +AS  L      +Q+H   +K+G +S+VFV  +    Y K     +A KM
Sbjct: 106 PNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKM 165

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+ ++ +WN+ +S  V  G+Y  AL  F+E        +  +F + L AC     L
Sbjct: 166 FDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYL 225

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +H  +++   E  V +AN LID YGKC  V  +  +F  +   + +SW S+I + 
Sbjct: 226 RLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSY 285

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIA------------------------ 212
            +N   E A     R       P     + V++  A                        
Sbjct: 286 VQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNI 345

Query: 213 -----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ-- 259
                      + G IEDA      MP  N  +WN+++ GY ++ +   A+ LF EM   
Sbjct: 346 FVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCG 405

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           S  V  +  TF  +LS  +   ++  GM +  S   + G++      + ++D+  + G V
Sbjct: 406 SHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMV 465

Query: 319 EIADSMFRSL-CRKNLVTWNAMI 340
           E A    + +  R  +  W A++
Sbjct: 466 EQAYQFIKKMPIRPTVSVWGALL 488


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 145/467 (31%), Positives = 253/467 (54%), Gaps = 3/467 (0%)

Query: 52  NSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEI-YADAYSFTSA 110
           +SL  A ++F++I  P V  +N+LI G   S     AL LFVE+ R  +   D++SF   
Sbjct: 53  DSLHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFL 112

Query: 111 LAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI 170
           L A     +L  G+ +H   V Y L+  + +   LI MY +C  +  A  VF EMI+ +I
Sbjct: 113 LKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNI 172

Query: 171 ISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSP 230
           ++WN+++AA  R   ++ A      +P  +  S+N ++ G  + G+++ A  +   MP  
Sbjct: 173 VAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLK 232

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
           +  SW++++ G+ +     +A   F E++ + +  +E + + +LS  A   A  +G ++H
Sbjct: 233 DDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILH 292

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
             V K G    I V +AL+D YSKCG +++A  +F ++ R++ V+W AMI G A +G   
Sbjct: 293 GFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGE 352

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + I LF +++   +++PDS+TF+++L ACSH  +  D    YF  M   YGI+P +EH  
Sbjct: 353 EAIRLFNEMEE-SNIKPDSITFISILYACSHAGL-VDLGCSYFSRMVNTYGIEPVIEHYG 410

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            M+ L G+ G++ +A   + ++      +VWR LL A     +L +A     ++ +L+ +
Sbjct: 411 CMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPE 470

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           +   +V+L N+Y   G W   + +R  M  + L+K  G S IEV  +
Sbjct: 471 NSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRI 517



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 105/191 (54%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  L  +L A +  G   + + LH ++ KSGFL  + V+ AL+  Y K  +L  A  +
Sbjct: 267 PNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLV 326

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + + S VSW ++I+G    G   +A+ LF E+E S I  D+ +F S L AC   G +
Sbjct: 327 FDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLV 386

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
            LG +  S++V  Y +E  +    C++D+YG+ G ++ A     +M I  + I W +++ 
Sbjct: 387 DLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLG 446

Query: 179 ASARNGNLELA 189
           A + +GNL LA
Sbjct: 447 ACSIHGNLYLA 457



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 95/188 (50%), Gaps = 4/188 (2%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD 103
           ++  Y K   L  A ++F+++P    VSW+++I G+  +G +  A   F E+ R  +  +
Sbjct: 209 MLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPN 268

Query: 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
             S T  L+AC Q G+ + G  +H  + K    + + + N LID Y KCG+++ A  VF 
Sbjct: 269 EVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFD 328

Query: 164 EMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIED 219
            M+ +  +SW ++IA  A +G  E A    + +      PD+I++  ++   +  G ++ 
Sbjct: 329 NMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDL 388

Query: 220 AIMILSSM 227
                S M
Sbjct: 389 GCSYFSRM 396


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 149/517 (28%), Positives = 265/517 (51%), Gaps = 38/517 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P   V  HL+    + G D   ++    +     + N++    ++  Y K+  + +A K+
Sbjct: 96  PTTIVANHLIGMYFECGRDVEARK----VFDKMSVRNLYSWNHMLAGYAKLGDVNNARKL 151

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  VVSWN+++  Y + G + +A+ L+ +  R ++  +A+SF   L  C +L  L
Sbjct: 152 FDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKEL 211

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           QL   +H +++       +V+++ ++D Y KCG +  A  +F EM+ KDI +W ++++  
Sbjct: 212 QLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVS-- 269

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                                        G A++GD+  A  +   MP  N  SW+++++
Sbjct: 270 -----------------------------GYAKWGDMNSASELFHQMPEKNPVSWSALIS 300

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GY   +   EAL  F +M    +  ++YTFS+ L   A ++AL  G  +H  +I+     
Sbjct: 301 GYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRC 360

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRK-NLVTWNAMITGYARNGDLTKVIELFEQL 359
           + +V S+L+DMYSKCG +E +  +F  +  K ++V WN MI+  A+NG   K +++F  +
Sbjct: 361 NTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDM 420

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
                L+PD +TF+ +L+ACSH+ +  + +  +F++MT D+G+ P  EH   +I L+G+ 
Sbjct: 421 -VESGLKPDRITFIVILSACSHSGLVQEGL-RFFKAMTYDHGVFPDQEHYACLIDLLGRA 478

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G        +  +       VW ALL      +++++ R  A  VI+L+  S   YV L 
Sbjct: 479 GCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLA 538

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +LY   G W+    +R  M E+ +RKE G SWI+V N
Sbjct: 539 SLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGN 575


>gi|357514793|ref|XP_003627685.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358344437|ref|XP_003636296.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358345563|ref|XP_003636846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502231|gb|AES83434.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502781|gb|AES83984.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521707|gb|AET02161.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 791

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 162/532 (30%), Positives = 269/532 (50%), Gaps = 41/532 (7%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QLH  ++K GF   VF+  AL+  Y +   L +A ++F E+    +VSWN+++SGY Q G
Sbjct: 208 QLHSLVVKCGFGCEVFIGNALVTMYSRWGGLDEAGRVFNEMTIRDLVSWNAMLSGYAQEG 267

Query: 84  KYR--KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           +    +A+ LF  + R  +  D  S T A++ACG   +L+ G  IH    K      V +
Sbjct: 268 ECYGLEAVLLFGNMVREGMLLDHVSLTGAISACGYTKNLEFGKQIHGLAQKLGYGTHVAV 327

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN--------------GNLE 187
            N LI  Y KC  + DA  VF +M  ++++SW ++I+    N               N  
Sbjct: 328 CNVLISTYSKCKVLRDAKAVFQDMSARNVVSWTTLISIDEENVVSLFNAMRVDGVYPNDV 387

Query: 188 LAFGFLHRLPNPDTISYNEVINGI--------------------AQFGDIEDAIMILSSM 227
              G LH +   + +    +++G+                    A+F  I+++  I   +
Sbjct: 388 TFIGLLHAITIRNMVKEGLMVHGLCLKSCLSSEQNVSNSLITMYAKFESIQESKKIFEEL 447

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS--ALTW 285
               + SWN++++GY       EA   F     K++  ++YTF ++L+ IA     +L  
Sbjct: 448 NYQGTISWNALISGYAQNGLCKEAFLTFLS-AIKEIKPNQYTFGSVLNAIAAAEDISLKH 506

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G   HS +IK GL+    VA ALLDMY K G +  +  +F     K   +W  MI+ YAR
Sbjct: 507 GQRCHSHLIKLGLNTDPFVAGALLDMYGKRGNINESQRVFNETPEKTQFSWTGMISAYAR 566

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
           +GD   V+ L+++++       DS+TFL+VLAAC    +  D     F+SM K + I+PT
Sbjct: 567 HGDYESVMSLYKEIER-EGSNLDSITFLSVLAACCRKGM-VDVGHIIFDSMVKKHSIEPT 624

Query: 406 VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465
            EH   M+ ++G+ G +  A+ ++ ++  G    V ++LL +     ++++A      +I
Sbjct: 625 PEHYSIMVDMLGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCKLHGNVEMAERVVDSLI 684

Query: 466 KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           +++  S   YV++ NLY   GNW+  + +R  MR RG++KE G SW++V NV
Sbjct: 685 QMDPGSSGPYVLMANLYAEKGNWEKVAEVRKGMRGRGVKKEVGFSWVDVANV 736



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/494 (24%), Positives = 234/494 (47%), Gaps = 58/494 (11%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H +++ +GF+S V VS +LM  Y K      A  +F  +  P +VSWN+++SG+ +S 
Sbjct: 105 QIHGFVVATGFVSRVTVSNSLMKMYCKAGRFELALCVFEGLSCPDIVSWNTILSGFEKS- 163

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLG-----SLQLGMAIHSKIVKYSLERG 138
               ALN    +  + +  D  ++T+AL+ C             G+ +HS +VK      
Sbjct: 164 --VDALNFACFMHLNGVVFDPVTYTTALSFCWDRDYWDDHGFLFGLQLHSLVVKCGFGCE 221

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN---LE--LAFGFL 193
           V I N L+ MY + G +++A  VF EM  +D++SWN++++  A+ G    LE  L FG +
Sbjct: 222 VFIGNALVTMYSRWGGLDEAGRVFNEMTIRDLVSWNAMLSGYAQEGECYGLEAVLLFGNM 281

Query: 194 HR----------------LPNPDTISYNEVINGIAQ---FGD-----------------I 217
            R                      + + + I+G+AQ   +G                  +
Sbjct: 282 VREGMLLDHVSLTGAISACGYTKNLEFGKQIHGLAQKLGYGTHVAVCNVLISTYSKCKVL 341

Query: 218 EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277
            DA  +   M + N  SW ++++  ++   V   + LF  M+   V  ++ TF  +L  I
Sbjct: 342 RDAKAVFQDMSARNVVSWTTLIS--IDEENV---VSLFNAMRVDGVYPNDVTFIGLLHAI 396

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
              + +  G+++H   +K  L +   V+++L+ MY+K   ++ +  +F  L  +  ++WN
Sbjct: 397 TIRNMVKEGLMVHGLCLKSCLSSEQNVSNSLITMYAKFESIQESKKIFEELNYQGTISWN 456

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397
           A+I+GYA+NG   +    F  L  +++++P+  TF +VL A +  +    K  +   S  
Sbjct: 457 ALISGYAQNGLCKEAFLTF--LSAIKEIKPNQYTFGSVLNAIAAAEDISLKHGQRCHSHL 514

Query: 398 KDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
              G+        +++ + G++G +  +QR+  E    +    W  ++SA     D + +
Sbjct: 515 IKLGLNTDPFVAGALLDMYGKRGNINESQRVFNETPEKTQ-FSWTGMISAYARHGDYE-S 572

Query: 458 RISAAEVIKLEGDS 471
            +S  + I+ EG +
Sbjct: 573 VMSLYKEIEREGSN 586



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 106/455 (23%), Positives = 199/455 (43%), Gaps = 55/455 (12%)

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
           H +F +IPQP+  S N  +  ++      +AL++F    +     +    T AL+     
Sbjct: 38  HNLFEKIPQPNASSINRSMLNFLHKNLPFQALSVFKNQTQFPFLQNIDEVTLALSFKACR 97

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
           G   LG  IH  +V       V ++N L+ MY K G  E A+ VF  +   DI+SWN+++
Sbjct: 98  GEFILGAQIHGFVVATGFVSRVTVSNSLMKMYCKAGRFELALCVFEGLSCPDIVSWNTIL 157

Query: 178 AASAR-------------NG--------NLELAF----------GFLHRLP--------- 197
           +   +             NG           L+F          GFL  L          
Sbjct: 158 SGFEKSVDALNFACFMHLNGVVFDPVTYTTALSFCWDRDYWDDHGFLFGLQLHSLVVKCG 217

Query: 198 -NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV--PEALHL 254
              +    N ++   +++G +++A  + + M   +  SWN++L+GY         EA+ L
Sbjct: 218 FGCEVFIGNALVTMYSRWGGLDEAGRVFNEMTIRDLVSWNAMLSGYAQEGECYGLEAVLL 277

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           FG M  + + +D  + +  +S       L +G  IH    K G    + V + L+  YSK
Sbjct: 278 FGNMVREGMLLDHVSLTGAISACGYTKNLEFGKQIHGLAQKLGYGTHVAVCNVLISTYSK 337

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           C  +  A ++F+ +  +N+V+W  +I+      D   V+ LF  ++ V  + P+ VTF+ 
Sbjct: 338 CKVLRDAKAVFQDMSARNVVSWTTLIS-----IDEENVVSLFNAMR-VDGVYPNDVTFIG 391

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           +L A +  ++  + +  +   +      +  V +  S+I +  +   +  ++++  EL +
Sbjct: 392 LLHAITIRNMVKEGLMVHGLCLKSCLSSEQNVSN--SLITMYAKFESIQESKKIFEELNY 449

Query: 435 GSYGVVWRALLSA---SGACSDLDVARISAAEVIK 466
               + W AL+S    +G C +  +  +SA + IK
Sbjct: 450 QGT-ISWNALISGYAQNGLCKEAFLTFLSAIKEIK 483



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 152/349 (43%), Gaps = 46/349 (13%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           + +Q+H    K G+ ++V V   L+  Y K   L DA  +F ++   +VVSW +LI    
Sbjct: 308 FGKQIHGLAQKLGYGTHVAVCNVLISTYSKCKVLRDAKAVFQDMSARNVVSWTTLI---- 363

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
            S      ++LF  +    +Y +  +F   L A      ++ G+ +H   +K  L     
Sbjct: 364 -SIDEENVVSLFNAMRVDGVYPNDVTFIGLLHAITIRNMVKEGLMVHGLCLKSCLSSEQN 422

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF-GFLHRLP-- 197
           ++N LI MY K  S++++  +F E+  +  ISWN++I+  A+NG  + AF  FL  +   
Sbjct: 423 VSNSLITMYAKFESIQESKKIFEELNYQGTISWNALISGYAQNGLCKEAFLTFLSAIKEI 482

Query: 198 NPDTISYNEVINGIA-------------------------------------QFGDIEDA 220
            P+  ++  V+N IA                                     + G+I ++
Sbjct: 483 KPNQYTFGSVLNAIAAAEDISLKHGQRCHSHLIKLGLNTDPFVAGALLDMYGKRGNINES 542

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             + +  P     SW  +++ Y         + L+ E++ +   +D  TF ++L+     
Sbjct: 543 QRVFNETPEKTQFSWTGMISAYARHGDYESVMSLYKEIEREGSNLDSITFLSVLAACCRK 602

Query: 281 SALTWGMLIH-SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
             +  G +I  S V K  ++ +    S ++DM  + G+++ A+ +   +
Sbjct: 603 GMVDVGHIIFDSMVKKHSIEPTPEHYSIMVDMLGRVGRLDEAEELMHQI 651



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 107/194 (55%), Gaps = 6/194 (3%)

Query: 1   PNEYVLFHLLRA---SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
           PN+Y    +L A   + D+    + Q+ H +++K G  ++ FV+ AL+  Y K  ++ ++
Sbjct: 484 PNQYTFGSVLNAIAAAEDISLK-HGQRCHSHLIKLGLNTDPFVAGALLDMYGKRGNINES 542

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
            ++F E P+ +  SW  +IS Y + G Y   ++L+ E+ER     D+ +F S LAAC + 
Sbjct: 543 QRVFNETPEKTQFSWTGMISAYARHGDYESVMSLYKEIEREGSNLDSITFLSVLAACCRK 602

Query: 118 GSLQLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNS 175
           G + +G  I   +V K+S+E      + ++DM G+ G +++A  +  ++     +S   S
Sbjct: 603 GMVDVGHIIFDSMVKKHSIEPTPEHYSIMVDMLGRVGRLDEAEELMHQIPGGPGLSVLQS 662

Query: 176 VIAASARNGNLELA 189
           ++ +   +GN+E+A
Sbjct: 663 LLGSCKLHGNVEMA 676


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 168/557 (30%), Positives = 278/557 (49%), Gaps = 47/557 (8%)

Query: 5   VLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEI 64
            +  LL+A   L      +Q+H Y+++ G +SN  +  +++  Y + N L  A  +F   
Sbjct: 234 TIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDST 293

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD--------------------- 103
              ++ SWNS+IS Y  +G    A +LF E+E S I  D                     
Sbjct: 294 EDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVL 353

Query: 104 --------------AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
                         + S TSAL A  +LG   LG  IH  I++  LE  V +   L+DMY
Sbjct: 354 TNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMY 413

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYN 205
            K   +E A  VF    +K+I +WNS+I+     G  + A   L ++       D +++N
Sbjct: 414 IKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWN 473

Query: 206 EVINGIAQFGDIEDAIMILSSMPS----PNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
            +++G +  G  E+A+ +++ + S    PN  SW ++++G        +AL  F +MQ +
Sbjct: 474 SLVSGYSMSGCSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEE 533

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           +V  +  T ST+L   AG S L  G  IH   +K G    I +A+AL+DMYSK G++++A
Sbjct: 534 NVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSKGGKLKVA 593

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL-KTVRDLQPDSVTFLNVLAACS 380
             +FR++  K L  WN M+ GYA  G   +V  LF+ + KT   ++PD++TF  +L+ C 
Sbjct: 594 HEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKT--GIRPDAITFTALLSGCK 651

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           ++ +  D   +YF+SM  DY I PT+EH   M+ L+G+ G +  A   I  +   +   +
Sbjct: 652 NSGLVMDGW-KYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASI 710

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W A+L+A     D+ +A I+A  + +LE  +   YV++ N+Y++   W     ++  M  
Sbjct: 711 WGAVLAACRLHKDIKIAEIAARNLFRLEPYNSANYVLMMNIYSTFERWGDVERLKESMTA 770

Query: 501 RGLRKEAGCSWIEVENV 517
            G++     SWI+V   
Sbjct: 771 MGVKIPNVWSWIQVRQT 787



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 179/390 (45%), Gaps = 30/390 (7%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           ++H  +LK GF  +V +S AL+  Y K   +  A+++F E P      WN+++   ++S 
Sbjct: 152 EVHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSE 211

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           ++  AL L   ++ +   A   +    L ACG+L +L  G  IH  ++++       I N
Sbjct: 212 RWEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICN 271

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS 203
            ++ MY +   +E A  VF    D ++ SWNS+I++ A NG L  A+     +       
Sbjct: 272 SIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREME------ 325

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
                                SS   P+  +WNS+L+G++ +      L     +QS   
Sbjct: 326 ---------------------SSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGF 364

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             D  + ++ L  +  L     G  IH  +++  L+  + V ++L+DMY K   +E A+ 
Sbjct: 365 KPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEV 424

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F     KN+  WN++I+GY   G      +L  Q+K    ++ D VT+ ++++  S + 
Sbjct: 425 VFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKE-EGIKADLVTWNSLVSGYSMSG 483

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMI 413
              + ++    +  K  G+ P V    +MI
Sbjct: 484 CSEEALAVI--NRIKSLGLTPNVVSWTAMI 511



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 162/367 (44%), Gaps = 15/367 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +   L+A  +LG+    +++H YI++S    +V+V T+L+  Y K + L  A  +
Sbjct: 366 PDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVV 425

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F      ++ +WNSLISGY   G +  A  L ++++   I AD  ++ S ++     G  
Sbjct: 426 FHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCS 485

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +  +A+ ++I    L   VV    +I    +  +  DA+  F +M ++++   ++ I+  
Sbjct: 486 EEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTL 545

Query: 181 AR---------NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
            R          G     F   H   + D      +I+  ++ G ++ A  +  ++    
Sbjct: 546 LRACAGPSLLKKGEEIHCFSMKHGFVD-DIYIATALIDMYSKGGKLKVAHEVFRNIKEKT 604

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI--AGLSALTWGMLI 289
              WN ++ GY       E   LF  M    +  D  TF+ +LSG   +GL    W    
Sbjct: 605 LPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFTALLSGCKNSGLVMDGWKYF- 663

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK-NLVTWNAMITGYARNGD 348
            S      ++ +I   S ++D+  K G ++ A     ++ +K +   W A++     + D
Sbjct: 664 DSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASIWGAVLAACRLHKD 723

Query: 349 LTKVIEL 355
           + K+ E+
Sbjct: 724 I-KIAEI 729



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 2/168 (1%)

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVN-RNRVPEALHLFGEMQSKDVPMDEYTFS 271
           +FGD E A  +     + N   WNS L  + +      E L +F E+  K V  D    +
Sbjct: 76  EFGDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEILEVFKELHDKGVKFDSKALT 135

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
            +L     L  L  GM +H+C++K+G    + ++ AL+++Y KC  ++ A+ +F     +
Sbjct: 136 VVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQ 195

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
               WN ++    R+      +EL  ++++      D  T + +L AC
Sbjct: 196 EDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDG-TIVKLLQAC 242


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  258 bits (659), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 168/543 (30%), Positives = 272/543 (50%), Gaps = 47/543 (8%)

Query: 20  TYCQQLHCYILKSGFLSNVFVS--TALMGFYRKINSLADAHKMFVEIPQP--SVVSWNSL 75
           +Y  QLH  ++KSG L+    S  + L         L  A  +F   P+P  S   +N L
Sbjct: 30  SYLPQLHAALIKSGELTGSAKSFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVL 89

Query: 76  ISGYVQSGKYRKALNLFVEL--ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY 133
           +  ++ +G    AL+LF+E+    S   AD ++   AL +C ++ +L +G  + +  VK 
Sbjct: 90  MRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKR 149

Query: 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELA 189
            L     + + LI MY  CG V  A  VF    +  ++ WN+++AA  +NG+    +E+ 
Sbjct: 150 GLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMF 209

Query: 190 FGFLHRLPNPDTISYNEVINGIAQFGD--------------------------------- 216
            G L      D ++   V+    + GD                                 
Sbjct: 210 KGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKC 269

Query: 217 --IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
             I  A  +   M S +  +W+++++GY   ++  EAL LF EMQ   V  ++ T  ++L
Sbjct: 270 GEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVL 329

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
           S  A L AL  G  +HS V ++ L  + ++ +AL+D Y+KCG ++ A   F S+  KN  
Sbjct: 330 SACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSW 389

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFE 394
           TW A+I G A NG   + +ELF  ++    ++P  VTF+ VL ACSH+ +  ++   +F+
Sbjct: 390 TWTALIKGMATNGRGREALELFSSMREA-GIEPTDVTFIGVLMACSHSCL-VEEGRRHFD 447

Query: 395 SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDL 454
           SM +DYGIKP VEH   M+ L+G+ G V  A + IR +      V+WRALLS+     ++
Sbjct: 448 SMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNV 507

Query: 455 DVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
            +   +  ++I L       YV+L N+Y S G W  A+++R  M++RG+ K  GCS IE+
Sbjct: 508 GIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIEL 567

Query: 515 ENV 517
           + V
Sbjct: 568 DGV 570



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 98/184 (53%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +E  L  ++ A   +G     + +  ++ + G   N  + TALM  Y K   +  A ++F
Sbjct: 220 DEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLF 279

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +    VV+W+++ISGY Q+ + R+AL LF E++ + +  +  +  S L+AC  LG+L+
Sbjct: 280 DGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALE 339

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  +HS + +  L    ++   L+D Y KCG ++DA+  F  M  K+  +W ++I   A
Sbjct: 340 TGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMA 399

Query: 182 RNGN 185
            NG 
Sbjct: 400 TNGR 403



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 109/232 (46%), Gaps = 5/232 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+  +  +L A + LG     + +H Y+ +        + TAL+ FY K   + DA + 
Sbjct: 320 PNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEA 379

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P  +  +W +LI G   +G+ R+AL LF  +  + I     +F   L AC     +
Sbjct: 380 FESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLV 439

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G      + + Y ++  V    C++D+ G+ G V++A      M I+ + + W ++++
Sbjct: 440 EEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLS 499

Query: 179 ASARNGNLELAFGFLHRLP--NPD-TISYNEVINGIAQFGDIEDAIMILSSM 227
           + A + N+ +    L ++   NP  +  Y  + N  A  G  +DA M+   M
Sbjct: 500 SCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEM 551


>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
          Length = 751

 Score =  258 bits (659), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 154/537 (28%), Positives = 278/537 (51%), Gaps = 47/537 (8%)

Query: 24  QLHCYILKSGFLSNV-----FVSTA-----LMGFYRKINSLADAHKMFVEIP-QPSVVSW 72
           Q+H ++L++   +N      F++T      L   Y  +  +  A +MF   P +      
Sbjct: 170 QIHAFMLRNALETNPNLFTKFIATCSSIALLAPLYDPLAGIVHARRMFDHRPHRDDAFLC 229

Query: 73  NSLISGYVQSGKYRKALNLFVELERSEIYA-DAYSFTSALAACGQLGSLQLGMAIHSKIV 131
           NS+I  YV   +Y ++  L+ +L R+  +  D+++F+    +C    ++  G  IHS +V
Sbjct: 230 NSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVV 289

Query: 132 KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG 191
                  +  A  L+DMY K G ++ A  +F EMID+  +SW ++I    R+G+++ A  
Sbjct: 290 AVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGK 349

Query: 192 FLHRLPNPDTISYNEVINGIAQFGD-------------------------------IEDA 220
              ++   D+ ++N +I+   + GD                               ++ A
Sbjct: 350 LFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSA 409

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK-DVPMDEYTFSTMLSGIAG 279
             +  +MP  N  SWN++++GY    +  EAL LF EMQS   +  DE T  ++L  IA 
Sbjct: 410 RSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIAD 469

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
           L AL  G  +H  V ++ LD +  V +AL+DMY+KCG++  +  +F ++  K   +WNA+
Sbjct: 470 LGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNAL 529

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKD 399
           I  +A NG   + + LF ++   +   P+ +T + VL+AC+H+ +  ++   +F++M ++
Sbjct: 530 INAFAINGRAKEALGLFMEMNH-KGFMPNEITMIGVLSACNHSGL-VEEGKRWFKAM-EE 586

Query: 400 YGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARI 459
           +G+ P +EH   M+ L+G+ G +  A++++  + + + G++  + L A G   D+  A  
Sbjct: 587 FGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAER 646

Query: 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
              E IK+E  +D  Y+ML NLY +   W  A  ++  MR  G++KEAGCS IEV++
Sbjct: 647 VLKEAIKMEAWNDGNYIMLRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDS 703



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 150/346 (43%), Gaps = 48/346 (13%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q++H +++  GF  +++ +TAL+  Y K   +  A K+F E+   S VSW +LI GYV+S
Sbjct: 282 QEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRS 341

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G    A  LF ++    I  D+ +F + + A  +LG     M    K+     ER VV  
Sbjct: 342 GDMDNAGKLFDQM----IEKDSAAFNTMIDAYVKLGD----MCSARKLFDEMPERSVVSW 393

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
             +I  Y   G+++ A  +F  M +K++ SWN++I+   +N     A    H + +    
Sbjct: 394 TIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSL 453

Query: 199 -PDTISYNEVINGIAQF-----------------------------------GDIEDAIM 222
            PD ++   V+  IA                                     G+I  +  
Sbjct: 454 EPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRG 513

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           +  +MP   ++SWN+++  +    R  EAL LF EM  K    +E T   +LS       
Sbjct: 514 VFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGL 573

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           +  G      + + GL   I     ++D+  + G ++ A+ +  S+
Sbjct: 574 VEEGKRWFKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESM 619



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 77/158 (48%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +  +L A +DLG       +H ++ +        V TAL+  Y K   +  +  +
Sbjct: 455 PDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGV 514

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+    SWN+LI+ +  +G+ ++AL LF+E+       +  +    L+AC   G +
Sbjct: 515 FDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLV 574

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
           + G      + ++ L   +    C++D+ G+ G +++A
Sbjct: 575 EEGKRWFKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEA 612


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  258 bits (659), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 147/499 (29%), Positives = 271/499 (54%), Gaps = 4/499 (0%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRK--INSLADAHKMFVEIPQPSVVSWNSLISG 78
           + +Q+H   L++G   + +VS  L+  Y     ++L  A K+F  +P P+V  +N +I G
Sbjct: 45  HLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKG 104

Query: 79  YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
            +Q+ +  KA+  + ++  +    + +++ +   AC    + + G+ +H+ ++K  L   
Sbjct: 105 CLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGD 164

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN 198
           V I +  I MYG  G VE A  + GE  + D+I +N++I    + G +E A      + +
Sbjct: 165 VHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMED 224

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
            +  S+N +++G+A+ G IE+A  + + M   N  SW++++ GY+      EAL +F  M
Sbjct: 225 KNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVM 284

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           Q +++   ++  S++L+  A L AL  G  IH+ V         V+ +AL+DMY+KCG++
Sbjct: 285 QREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRL 344

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           ++A  +F  + +K + TWNAMI G   +G     IELF +++  +  +P+ +T L VL+A
Sbjct: 345 DMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQK-QKFRPNGITLLGVLSA 403

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           C+H+ +  D+    F SM + YGI+P +EH   ++ L+G+ G +  A+ ++  +      
Sbjct: 404 CAHSGM-VDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSA 462

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
            VW ALL A     D+++       +++LE  +   Y +L N+Y   G WD  + +R  M
Sbjct: 463 AVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLM 522

Query: 499 RERGLRKEAGCSWIEVENV 517
           +ERG++   G S I+ + V
Sbjct: 523 KERGVKTSTGISMIDFDGV 541



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 98/191 (51%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P ++VL  +L A ++LG     + +H Y+  +    +  + TAL+  Y K   L  A  +
Sbjct: 291 PRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDV 350

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ +  V +WN++I G    G+   A+ LF ++++ +   +  +    L+AC   G +
Sbjct: 351 FEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMV 410

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G+ I + + + Y +E G+    C++D+ G+ G + +A  V   M ++     W +++ 
Sbjct: 411 DEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLG 470

Query: 179 ASARNGNLELA 189
           A  ++G++EL 
Sbjct: 471 ACRKHGDVELG 481


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  258 bits (658), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 152/519 (29%), Positives = 266/519 (51%), Gaps = 34/519 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYC-QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P+ +    LL      G    C ++LHC+++K G  SN++V  AL+  Y     +  A  
Sbjct: 132 PDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARG 191

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F    +  V SWN +ISGY +  +Y +++ L VE+ER+ +   + +    L+AC ++  
Sbjct: 192 VFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKD 251

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
             L   +H  + +   E  + + N L++ Y  CG ++ A+ +F  M              
Sbjct: 252 KDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSM-------------- 297

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
            AR                 D IS+  ++ G  + G+++ A      MP  +  SW  ++
Sbjct: 298 KAR-----------------DVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMI 340

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            GY+      E+L +F EMQS  +  DE+T  ++L+  A L +L  G  I + + K  + 
Sbjct: 341 DGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIK 400

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
             +VV +AL+DMY KCG  E A  +F  + +++  TW AM+ G A NG   + I++F Q+
Sbjct: 401 NDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQM 460

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           + +  +QPD +T+L VL+AC+H+ +  D+  ++F  M  D+ I+P++ H   M+ ++G+ 
Sbjct: 461 QDM-SIQPDDITYLGVLSACNHSGM-VDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRA 518

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G V  A  ++R++      +VW ALL AS   +D  +A ++A ++++LE D+  VY +LC
Sbjct: 519 GLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLC 578

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVA 518
           N+Y     W     +R  + +  ++K  G S IEV   A
Sbjct: 579 NIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFA 617



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 97/168 (57%), Gaps = 4/168 (2%)

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G +  A  +   +P P+   WN+++ G+   +   E + L+  M  + V  D +TF  +L
Sbjct: 82  GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141

Query: 275 SGIA-GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           +G+     AL  G  +H  V+K GL +++ V +AL+ MYS CG +++A  +F   C++++
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDL-QPDSVTFLNVLAACS 380
            +WN MI+GY R  +  + IEL  +++  R+L  P SVT L VL+ACS
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEME--RNLVSPTSVTLLLVLSACS 247


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 154/512 (30%), Positives = 265/512 (51%), Gaps = 17/512 (3%)

Query: 19  DTY-----CQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWN 73
           DTY      + +H  I+      N  +   LM  Y  +  +A A K+F EIP+ +V+  N
Sbjct: 50  DTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIIN 109

Query: 74  SLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY 133
            +I  YV +G Y + + +F  +    +  D Y+F   L AC   G++ +G  IH    K 
Sbjct: 110 VMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKV 169

Query: 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL 193
            L   + + N L+ MYGKCG + +A  V  EM  +D++SWNS++   A+N   + A    
Sbjct: 170 GLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVC 229

Query: 194 HRLP----NPDTISYNEVINGIAQFGDIEDAIMI---LSSMPSPNSSSWNSILTGYVNRN 246
             +     + D  +   ++  ++     E+ + +      M   +  SWN ++ G   +N
Sbjct: 230 REMESVKISHDAGTMASLLPAVSN-TTTENVMYVKDMFFKMGKKSLVSWN-VMIGVYMKN 287

Query: 247 RVP-EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
            +P EA+ L+  M++     D  + +++L      SAL+ G  IH  + ++ L  ++++ 
Sbjct: 288 AMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE 347

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           +AL+DMY+KCG +E A  +F ++  +++V+W AMI+ Y  +G     + LF +L+    L
Sbjct: 348 NALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQD-SGL 406

Query: 366 QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425
            PDS+ F+  LAACSH  +  ++    F+ MT  Y I P +EH   M+ L+G+ G+V  A
Sbjct: 407 VPDSIAFVTTLAACSHAGL-LEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEA 465

Query: 426 QRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485
            R I+++       VW ALL A    SD D+  ++A ++ +L  +    YV+L N+Y   
Sbjct: 466 YRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKA 525

Query: 486 GNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           G W+  + +RN M+ +GL+K  G S +EV  +
Sbjct: 526 GRWEEVTNIRNIMKSKGLKKNPGASNVEVNRI 557



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 158/350 (45%), Gaps = 12/350 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A S  G     +++H    K G  S +FV   L+  Y K   L++A  +
Sbjct: 138 PDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLV 197

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
             E+ +  VVSWNSL+ GY Q+ ++  AL +  E+E  +I  DA +  S L A     + 
Sbjct: 198 LDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTE 257

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM----IDKDIISWNSV 176
            + M +     K   ++ +V  N +I +Y K     +A+ ++  M     + D +S  SV
Sbjct: 258 NV-MYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSV 315

Query: 177 IAASARNGNLELA---FGFLHRLP-NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           + A      L L     G++ R    P+ +  N +I+  A+ G +E A  +  +M S + 
Sbjct: 316 LPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDV 375

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
            SW ++++ Y    R  +A+ LF ++Q   +  D   F T L+  +    L  G      
Sbjct: 376 VSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKL 435

Query: 293 VIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSLC-RKNLVTWNAMI 340
           +     +   +   + ++D+  + G+V+ A    + +    N   W A++
Sbjct: 436 MTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALL 485



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 127/277 (45%), Gaps = 24/277 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  +L A  D    +  +++H YI +   + N+ +  AL+  Y K   L  A  +
Sbjct: 307 PDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDV 366

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VVSW ++IS Y  SG+   A+ LF +L+ S +  D+ +F + LAAC   G L
Sbjct: 367 FENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLL 426

Query: 121 QLG------MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISW 173
           + G      M  H KI    LE       C++D+ G+ G V++A     +M ++ +   W
Sbjct: 427 EEGRSCFKLMTDHYKITP-RLEH----LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVW 481

Query: 174 NSVIAASARNGNLE---LAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMI------- 223
            +++ A   + + +   LA   L +L    +  Y  + N  A+ G  E+   I       
Sbjct: 482 GALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSK 541

Query: 224 -LSSMPSPNSSSWNSILTGYVNRNRV-PEALHLFGEM 258
            L   P  ++   N I+  ++  +R  P++  ++ E+
Sbjct: 542 GLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYREL 578


>gi|347954480|gb|AEP33740.1| chlororespiratory reduction 21, partial [Matthiola maderensis]
          Length = 807

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 153/525 (29%), Positives = 280/525 (53%), Gaps = 13/525 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +   L AS+++G     +Q H   + +G   +  + T+++ FY K+  +  A  +
Sbjct: 248 PTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMI 307

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  VV+WN LISGYVQ G   +A+ +   + R  +  D  + ++ ++A     +L
Sbjct: 308 FDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNL 367

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  I    +++ LE  +V+A+  +DMY KCGS+ +A  VF   + KD+I WN++++A 
Sbjct: 368 KLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAY 427

Query: 181 ARNG----NLELAFGF-LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PN 231
           A +G     L L +   L  +P P+ I++N +I  + + G + +A  +   M S    PN
Sbjct: 428 ADSGLSGEALRLFYEMQLESVP-PNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPN 486

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SW +++ G V      EA+    +MQ   +  + +T +  LS    L++L +G  IH 
Sbjct: 487 LISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACVNLASLHFGRSIHG 546

Query: 292 CVIK-QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
            +I+ Q    S  + ++L+DMY+KCG +  A+ +F S     L  +NAMI+ YA  G + 
Sbjct: 547 YIIRNQQYSFSASIETSLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYGKVR 606

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + I L+  L+    ++PD++T  ++L+AC++     ++  E F  M   +G+KP +EH  
Sbjct: 607 EAITLYRSLED-GGVKPDNITITSLLSACNYGR-DVNQAIEVFRDMVSKHGMKPCLEHYG 664

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            M+ L+   GE  +A R++ E+ +     + ++L  +       ++    +  +++ E D
Sbjct: 665 LMVDLLASAGETDKALRLMEEMPYKPDARMVQSLFESCSKQHKTELVEYLSKHLLESEPD 724

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           +   YVM+ N Y   G+WD  + MR  M+ +GL+K+ GCSWI+++
Sbjct: 725 NSGNYVMISNAYAVEGSWDEVAKMREMMKVKGLKKKPGCSWIQIK 769



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 218/451 (48%), Gaps = 44/451 (9%)

Query: 23  QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           QQ+H  ILK G  +  N ++ T L+ FY K ++L  A  +F ++   +V SW ++I    
Sbjct: 66  QQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKC 125

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + G    AL  FVE+  + I+ D +   +   ACG L   + G  +H  + K  L   V 
Sbjct: 126 RIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVF 185

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
           +A+ L DMYGKCG ++DA  VF  + D++ ++WN+++    +NG  E A   L  +    
Sbjct: 186 VASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRKEG 245

Query: 197 --PNPDTISY---------------------------------NEVINGIAQFGDIEDAI 221
             P   T+S                                    ++N   + G IE A 
Sbjct: 246 IEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAE 305

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           MI   M   +  +WN +++GYV +  V EA+++   M+ +++  D  T ST++S      
Sbjct: 306 MIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQ 365

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  I    I+ GL++ IV+AS  +DMY+KCG +  A  +F S  +K+L+ WN +++
Sbjct: 366 NLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLS 425

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            YA +G   + + LF +++ +  + P+ +T+ N++      +   ++  E F  M +  G
Sbjct: 426 AYADSGLSGEALRLFYEMQ-LESVPPNVITW-NLIILSLLRNGQVNEAKEMFLQM-QSSG 482

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
           I P +    +M+  + Q G    A   +R++
Sbjct: 483 IFPNLISWTTMMNGLVQNGCSEEAILFLRKM 513



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 212/480 (44%), Gaps = 87/480 (18%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +V+ ++ +A   L W  + + +H Y+ K+G    VFV+++L   Y K   L DA K+
Sbjct: 147 PDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKV 206

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP  + V+WN+L+ GYVQ+G Y +A+ L  E+ +  I     + ++ L+A   +G +
Sbjct: 207 FDYIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGI 266

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G   H+  +   LE   ++   +++ Y K G +E A  +F  MI+KD+++WN +I+  
Sbjct: 267 EEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLISGY 326

Query: 181 ARNGNLELAFGF--LHRLPN-------------------------------------PDT 201
            + G +E A     L R  N                                      D 
Sbjct: 327 VQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDI 386

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           +  +  ++  A+ G I +A  +  S    +   WN++L+ Y +     EAL LF EMQ +
Sbjct: 387 VLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLE 446

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            VP +                +TW ++I S +                    + GQV  A
Sbjct: 447 SVPPN---------------VITWNLIILSLL--------------------RNGQVNEA 471

Query: 322 DSMFRSLCRK----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
             MF  +       NL++W  M+ G  +NG   + I    +++    L+P++ T    L+
Sbjct: 472 KEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQE-SGLRPNAFTITVALS 530

Query: 378 ACSH-TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
           AC +   + F +    +    + Y    ++E   S++ +  + G++ +A+R+     FGS
Sbjct: 531 ACVNLASLHFGRSIHGYIIRNQQYSFSASIE--TSLVDMYAKCGDINKAERV-----FGS 583



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 185/422 (43%), Gaps = 45/422 (10%)

Query: 67  PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI 126
           P   S+   +S   ++G+ R+AL+L  E++   I      +   L  C     L  G  I
Sbjct: 9   PLSTSYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQI 68

Query: 127 HSKIVKYS--LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
           H++I+K      R   I   L+  Y KC ++E A  +F ++  +++ SW ++I    R G
Sbjct: 69  HAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIG 128

Query: 185 NLELAF-GFLHRLPN---PDTISYNEVINGIAQF-------------------------- 214
             E A  GF+  L N   PD      V                                 
Sbjct: 129 LGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVAS 188

Query: 215 ---------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
                    G ++DA  +   +P  N+ +WN+++ GYV      EA+ L  EM+ + +  
Sbjct: 189 SLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRKEGIEP 248

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
              T ST LS  A +  +  G   H+  I  GL+   ++ +++L+ Y K G +E A+ +F
Sbjct: 249 TRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIF 308

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
             +  K++VTWN +I+GY + G + + I +  QL    +L+ D VT   +++A + T   
Sbjct: 309 DGMIEKDVVTWNLLISGYVQQGLVEEAIYMC-QLMRRENLKFDCVTLSTLMSAATSTQNL 367

Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
             K+ +  +     +G++  +    + + +  + G +  A+++  +       ++W  LL
Sbjct: 368 --KLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVF-DSTVQKDLILWNTLL 424

Query: 446 SA 447
           SA
Sbjct: 425 SA 426


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 156/499 (31%), Positives = 270/499 (54%), Gaps = 38/499 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++  +I+K+G   + +V  +L+  Y +++++ +A K+F E+     VSWN +ISGYV+ 
Sbjct: 217 EKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRC 276

Query: 83  GKYRKALNLFVELERS-EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
            ++  A+N F E+++      D  +  S L+AC  L +L+LG  IH+  V+  L     I
Sbjct: 277 RRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHN-YVRKELGFTTRI 335

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
            N L+DMY KCG +  A  +F EM  K++I W S+I+                       
Sbjct: 336 DNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMIS----------------------- 372

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                   G    GD+ +A  +    P  +   W +++ GYV  +   +A+ LF EMQ +
Sbjct: 373 --------GYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQ 424

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D++T  T+L+G A L AL  G  IH  + +  +   +VV +AL++MYSKCG V+ +
Sbjct: 425 KIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKS 484

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  L  K+  +W ++I G A NG  ++ + LF +++ V   +PD +TF+ VL+ACSH
Sbjct: 485 LEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERV-GAKPDDITFIGVLSACSH 543

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV- 440
             +  ++   +F SM K + I+P VEH   +I L+G+ G +  A+ +I+E+   +  +V 
Sbjct: 544 GGL-VEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVV 602

Query: 441 --WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
             + ALLSA    +++D+    A ++  +E     ++ +L N+Y S   W+ A  +R  M
Sbjct: 603 PLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKM 662

Query: 499 RERGLRKEAGCSWIEVENV 517
           +E G++K  GCS IEV+ +
Sbjct: 663 KELGVKKMPGCSLIEVDGI 681



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 138/267 (51%), Gaps = 19/267 (7%)

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-- 167
           A  A   LG+L+       KI  Y  +  + + N ++ +Y K G +   + +F ++ +  
Sbjct: 137 AFCADSSLGNLRYA----EKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDG 192

Query: 168 --KDIISWNSVIAA-----SARNGNLELAFGFLHRLP-NPDTISYNEVINGIAQFGDIED 219
              D  ++  V+ A       R G  E   GF+ +   + D   YN +I+   +  ++E+
Sbjct: 193 LWPDGFTYPFVLKAIGCLRDVRQG--EKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVEN 250

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK-DVPMDEYTFSTMLSGIA 278
           A  +   M + +S SWN +++GYV   R  +A++ F EMQ + +   DE T  + LS   
Sbjct: 251 AKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACT 310

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            L  L  G  IH+ V K+ L  +  + +ALLDMY+KCG + IA ++F  +  KN++ W +
Sbjct: 311 ALKNLELGDEIHNYVRKE-LGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTS 369

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDL 365
           MI+GY   GDL +  +LF++   VRD+
Sbjct: 370 MISGYINCGDLREARDLFDK-SPVRDV 395



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 123/259 (47%), Gaps = 4/259 (1%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           DTI+        +  G++  A  I + +  P+   +N ++  Y  R  + + L LF +++
Sbjct: 130 DTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLR 189

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
              +  D +T+  +L  I  L  +  G  +   ++K G+D    V ++L+DMY +   VE
Sbjct: 190 EDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVE 249

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F  +  ++ V+WN MI+GY R       I  F +++   + +PD  T ++ L+AC
Sbjct: 250 NAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSAC 309

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +      +   E    + K+ G    +++  +++ +  + G +  A+ +  E+   +  +
Sbjct: 310 TALK-NLELGDEIHNYVRKELGFTTRIDN--ALLDMYAKCGCLNIARNIFDEMSMKNV-I 365

Query: 440 VWRALLSASGACSDLDVAR 458
            W +++S    C DL  AR
Sbjct: 366 CWTSMISGYINCGDLREAR 384



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 101/203 (49%), Gaps = 5/203 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++ +  LL   + LG     + +H Y+ ++    +V V TAL+  Y K   +  + ++
Sbjct: 428 PDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEI 487

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+      SW S+I G   +GK  +AL LF E+ER     D  +F   L+AC   G +
Sbjct: 488 FYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLV 547

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD----IISWNS 175
           + G    + + K + +E  V    C+ID+ G+ G +++A  +  E+  ++    +  + +
Sbjct: 548 EEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGA 607

Query: 176 VIAASARNGNLELAFGFLHRLPN 198
           +++A   + N+++      +L N
Sbjct: 608 LLSACRIHNNVDMGERLAKKLEN 630


>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
 gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
 gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 609

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 159/532 (29%), Positives = 266/532 (50%), Gaps = 48/532 (9%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKIN-SLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q H +++KSG  ++  V  +L+  Y K+   + +  ++F        +SW S++SGYV  
Sbjct: 82  QFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTG 141

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            ++ KAL +FVE+    + A+ ++ +SA+ AC +LG ++LG   H  ++ +  E    I+
Sbjct: 142 KEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFIS 201

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN------------------- 183
           + L  +YG      DA  VF EM + D+I W +V++A ++N                   
Sbjct: 202 STLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGL 261

Query: 184 -------GNLELAFGFLHRLPNPDTISYNEVINGI--------------AQFGDIEDAIM 222
                  G +  A G L RL     I    + NGI               + G + +A  
Sbjct: 262 VPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQ 321

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           + + M   NS SW+++L GY       +A+ +F EM+ KD+    Y F T+L   AGL+A
Sbjct: 322 VFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEKDL----YCFGTVLKACAGLAA 377

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           +  G  IH   +++G   +++V SAL+D+Y K G ++ A  ++  +  +N++TWNAM++ 
Sbjct: 378 VRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSA 437

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
            A+NG   + +  F  +   + ++PD ++F+ +L AC HT +  D+   YF  M K YGI
Sbjct: 438 LAQNGRGEEAVSFFNDM-VKKGIKPDYISFIAILTACGHTGM-VDEGRNYFVLMAKSYGI 495

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLD-VARISA 461
           KP  EH   MI L+G+ G    A+ ++      +   +W  LL    A +D   VA   A
Sbjct: 496 KPGTEHYSCMIDLLGRAGLFEEAENLLERAECRNDASLWGVLLGPCAANADASRVAERIA 555

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
             +++LE      YV+L N+Y + G    A  +R  M  RG+ K  G SWI+
Sbjct: 556 KRMMELEPKYHMSYVLLSNMYKAIGRHGDALNIRKLMVRRGVAKTVGQSWID 607



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 186/408 (45%), Gaps = 48/408 (11%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE+ L   ++A S+LG     +  H  ++  GF  N F+S+ L   Y       DA ++F
Sbjct: 162 NEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVF 221

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGSL 120
            E+P+P V+ W +++S + ++  Y +AL LF  + R + +  D  +F + L ACG L  L
Sbjct: 222 DEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRL 281

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH K++   +   VV+ + L+DMYGKCGSV +A  VF  M  K+ +SW++++   
Sbjct: 282 KQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGY 341

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQ-------------------FGD----- 216
            +NG  E A      +   D   +  V+   A                    FG+     
Sbjct: 342 CQNGEHEKAIEIFREMEEKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVES 401

Query: 217 -----------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
                      I+ A  + S M   N  +WN++L+      R  EA+  F +M  K +  
Sbjct: 402 ALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKP 461

Query: 266 DEYTFSTMLSGIAGLSALTWG-----MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           D  +F  +L+       +  G     ++  S  IK G +      S ++D+  + G  E 
Sbjct: 462 DYISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHY----SCMIDLLGRAGLFEE 517

Query: 321 ADSMF-RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           A+++  R+ CR +   W  ++   A N D ++V E     K + +L+P
Sbjct: 518 AENLLERAECRNDASLWGVLLGPCAANADASRVAERIA--KRMMELEP 563



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 179/406 (44%), Gaps = 49/406 (12%)

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+  +A+ +      SEI A    + S L  C ++ S   G+  H+ +VK  LE    + 
Sbjct: 40  GQLTEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVG 99

Query: 143 NCLIDMYGKCG-SVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLP 197
           N L+ +Y K G  + +   VF     KD ISW S+++           LE+    +    
Sbjct: 100 NSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGL 159

Query: 198 NPDTISYNEVINGIAQFGDIE-----------------------------------DAIM 222
           + +  + +  +   ++ G++                                    DA  
Sbjct: 160 DANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARR 219

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLS 281
           +   MP P+   W ++L+ +   +   EAL LF  M + K +  D  TF T+L+    L 
Sbjct: 220 VFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLR 279

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  IH  +I  G+ +++VV S+LLDMY KCG V  A  +F  + +KN V+W+A++ 
Sbjct: 280 RLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLG 339

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GY +NG+  K IE+F +++     + D   F  VL AC+   +   ++ +         G
Sbjct: 340 GYCQNGEHEKAIEIFREME-----EKDLYCFGTVLKACA--GLAAVRLGKEIHGQYVRRG 392

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
               V    ++I L G+ G +  A R+  ++   +  + W A+LSA
Sbjct: 393 CFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNM-ITWNAMLSA 437



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 105/231 (45%), Gaps = 5/231 (2%)

Query: 218 EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277
           + A + L+   S ++ +  S +       ++ EA+ +     S ++P     ++++L   
Sbjct: 12  QHASLCLTPSISSSAPTKQSRILELCKLGQLTEAIRILNSTHSSEIPATPKLYASLLQTC 71

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ-VEIADSMFRSLCRKNLVTW 336
             + +   G+  H+ V+K GL+    V ++LL +Y K G  +     +F     K+ ++W
Sbjct: 72  NKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISW 131

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
            +M++GY    +  K +E+F ++ +   L  +  T  + + ACS  ++   ++   F  +
Sbjct: 132 TSMMSGYVTGKEHVKALEVFVEMVSF-GLDANEFTLSSAVKACS--ELGEVRLGRCFHGV 188

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
              +G +       ++  L G   E   A+R+  E+      + W A+LSA
Sbjct: 189 VITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDV-ICWTAVLSA 238


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 146/477 (30%), Positives = 253/477 (53%), Gaps = 20/477 (4%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A ++F ++    V+SWNS+ISGYV +G   + L ++ ++    I  D  +  S L  C  
Sbjct: 204 ASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
            G+L LG A+HS  +K + ER +  +N L+DMY KCG ++ A+ VF +M +++++SW S+
Sbjct: 264 SGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 177 IAASARNGNLELAFGFLHRLPNP----DTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           IA   R+G  + A   L ++       D ++   +++  A+ G +++   +   + + N 
Sbjct: 324 IAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNM 383

Query: 233 SS----WNSILTGYVNRNRVPEALHLFGEMQSKDV----------PMDEYTFSTMLSGIA 278
            S     N+++  Y     +  A  +F  M  KD+            D  T + +L   A
Sbjct: 384 ESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACA 443

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            LSAL  G  IH  +++ G  +   VA+AL+D+Y KCG + +A  +F  +  K+LV+W  
Sbjct: 444 SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 503

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           MI+GY  +G   + I  F +++    ++PD V+F+++L ACSH+ +  ++   +F  M  
Sbjct: 504 MISGYGMHGYGNEAIATFNEMRDA-GIEPDEVSFISILYACSHSGL-LEQGWRFFYIMKN 561

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           D+ I+P +EH   M+ L+ + G + +A   I  L       +W ALL       D+++A 
Sbjct: 562 DFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAE 621

Query: 459 ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
             A  V +LE ++   YV+L N+Y     W+    MR  + ++GLRK  GCSWIE++
Sbjct: 622 KVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIK 678



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 196/420 (46%), Gaps = 34/420 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H   +KS F   +  S  L+  Y K   L  A ++F ++ + +VVSW S+I+GY + 
Sbjct: 271 KAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+   A+ L  ++E+  +  D  + TS L AC + GSL  G  +H  I   ++E  + + 
Sbjct: 331 GRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVC 390

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA------------------SARNG 184
           N L+DMY KCGS++ A  VF  M+ KDIISWN++I                    SA   
Sbjct: 391 NALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACASLSALER 450

Query: 185 NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
             E+    L    + D    N +++   + G +  A ++   +PS +  SW  +++GY  
Sbjct: 451 GKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGM 510

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQ--GLDA 300
                EA+  F EM+   +  DE +F ++L     +GL    W       ++K    ++ 
Sbjct: 511 HGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFY---IMKNDFNIEP 567

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            +   + ++D+ S+ G +  A     +L    +   W A++ G     D    IEL E++
Sbjct: 568 KLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHD----IELAEKV 623

Query: 360 -KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
            + V +L+P++  +  +LA        +++V    E + K  G++      CS I + G+
Sbjct: 624 AERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKK-GLRKNPG--CSWIEIKGK 680



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 150/314 (47%), Gaps = 14/314 (4%)

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           V  +N+ I  + Q G    A+ L    ++SE+    YS  S L  C    SL  G  +HS
Sbjct: 66  VTDYNAKILHFCQLGNLENAMELVCMCQKSELETKTYS--SVLQLCAGSKSLTDGKKVHS 123

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
            I   ++    V+   L+ +Y  CG +++   VF  M  K++  WN +++  A+ G+ + 
Sbjct: 124 IIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKE 183

Query: 189 AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV 248
           +            I   + I G       E A  +   +   +  SWNS+++GYV+    
Sbjct: 184 SICLFK-------IMVEKGIEGKRP----ESASELFDKLCDRDVISWNSMISGYVSNGLT 232

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
              L ++ +M    + +D  T  ++L G A    L+ G  +HS  IK   +  I  ++ L
Sbjct: 233 ERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTL 292

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           LDMYSKCG ++ A  +F  +  +N+V+W +MI GY R+G     I L +Q++    ++ D
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEK-EGVKLD 351

Query: 369 SVTFLNVLAACSHT 382
            V   ++L AC+ +
Sbjct: 352 VVATTSILHACARS 365



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 98/223 (43%), Gaps = 35/223 (15%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  +L A + L      +++H YIL++G+ S+  V+ AL+  Y K   L  A  +
Sbjct: 430 PDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLL 489

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP   +VSW  +ISGY   G   +A+  F E+  + I  D  SF S L AC   G L
Sbjct: 490 FDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 549

Query: 121 QLGMAIHSKIVK--YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           + G      I+K  +++E  +    C++D+                              
Sbjct: 550 EQGWRFFY-IMKNDFNIEPKLEHYACMVDLL----------------------------- 579

Query: 179 ASARNGNLELAFGFLHRLP-NPDTISYNEVINGIAQFGDIEDA 220
             +R GNL  A+ F+  LP  PD   +  ++ G   + DIE A
Sbjct: 580 --SRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELA 620


>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
          Length = 655

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 155/515 (30%), Positives = 262/515 (50%), Gaps = 34/515 (6%)

Query: 1   PNEYVLFHLLRASSDL-GWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P    L  LLR+++   G   Y    H   +++G L + FV TAL G Y     + D  K
Sbjct: 147 PGPRALPALLRSAARCEGAGAYVAATHALAVRTGALDDGFVGTALAGAYAACGCVRDTRK 206

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  +    VVSW  ++  Y Q+  Y++AL LF +++ S +  D     + L ACG +  
Sbjct: 207 VFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVVPDQLILATVLPACGHIRH 266

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L++G AIHS ++   +  G  I++ LI +Y  C ++E A  ++ EM              
Sbjct: 267 LRIGKAIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKLYNEM-------------- 312

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
                            P  D +S   +++G A+   +E A  I   MP  +  SW++++
Sbjct: 313 -----------------PRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMI 355

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           +GYV+ N+  EAL LF  MQ   +  DE T  +++S  A L +L     IH+ +   GL+
Sbjct: 356 SGYVDSNQPNEALSLFNGMQECGIRSDEITMLSVISACANLGSLDKAKWIHAFIKNSGLN 415

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
             + + +AL+DM++KCG + +A ++F  +  KN++TW +MI+ +A +GD    + LFEQ+
Sbjct: 416 KVLHICNALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQM 475

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           K     +P+ VTFL++L AC H  +  +     F SM + YGI+P  EH   M+ L+G+ 
Sbjct: 476 KD-EGAEPNEVTFLSLLYACCHAGLVHEG-RLLFSSMVQQYGIEPKHEHYGCMVDLLGRA 533

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
             +  A  +I  +       +W +LL+A     DL +   +A ++++L+ + D   V+L 
Sbjct: 534 KLMQEAVSLIESMHLEPNVPIWGSLLAACWMHGDLKLGAFAAKKILQLDPNHDGASVLLL 593

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
            +Y    N + A  +R  M+   + KE G SW+E+
Sbjct: 594 KIYMKSDNLNNAQEVRGVMKLHRVSKETGLSWMEL 628


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 157/499 (31%), Positives = 270/499 (54%), Gaps = 38/499 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++  +I+K+G   + +V  +L+  Y +++++ +A K+F E+     VSWN +ISGYV+ 
Sbjct: 263 EKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRC 322

Query: 83  GKYRKALNLFVELERS-EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
            ++  A+N F E+++      D  +  S L+AC  L +L+LG  IH+  V+  L     I
Sbjct: 323 RRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHN-YVRKELGFTTRI 381

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
            N L+DMY KCG +  A  +F EM  K++I W S+I+                       
Sbjct: 382 DNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMIS----------------------- 418

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                   G    GD+ +A  +    P  +   W +++ GYV  +   +A+ LF EMQ +
Sbjct: 419 --------GYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQ 470

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  D++T  T+L+G A L AL  G  IH  + +  +   +VV +AL++MYSKCG V+ +
Sbjct: 471 RVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKS 530

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  L  K+  +W ++I G A NG  ++ + LF +++ V   +PD +TF+ VL+ACSH
Sbjct: 531 LEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERV-GAKPDDITFIGVLSACSH 589

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV- 440
             +  ++   +F SM K + I+P VEH   +I L+G+ G +  A+ +I+E+   +  +V 
Sbjct: 590 GGL-VEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVV 648

Query: 441 --WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
             + ALLSA    +++D+    A ++  +E     ++ +L N+Y S   W+ A  +R  M
Sbjct: 649 PLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKM 708

Query: 499 RERGLRKEAGCSWIEVENV 517
           +E G++K  GCS IEV+ +
Sbjct: 709 KELGVKKMPGCSLIEVDGI 727



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 138/267 (51%), Gaps = 19/267 (7%)

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-- 167
           A  A   LG+L+       KI  Y  +  + + N ++ MY K G +   + +F ++ +  
Sbjct: 183 AFCADSSLGNLRYA----EKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDG 238

Query: 168 --KDIISWNSVIAA-----SARNGNLELAFGFLHRLP-NPDTISYNEVINGIAQFGDIED 219
              D  ++  V+ A       R G  E   GF+ +   + D   YN +I+   +  ++E+
Sbjct: 239 LWPDGFTYPFVLKAIGCLRDVRQG--EKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVEN 296

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK-DVPMDEYTFSTMLSGIA 278
           A  +   M + +S SWN +++GYV   R  +A++ F EMQ + +   DE T  + LS   
Sbjct: 297 AKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACT 356

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            L  L  G  IH+ V K+ L  +  + +ALLDMY+KCG + IA ++F  +  KN++ W +
Sbjct: 357 ALKNLELGDEIHNYVRKE-LGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTS 415

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDL 365
           MI+GY   GDL +  +LF++   VRD+
Sbjct: 416 MISGYINCGDLREARDLFDK-SPVRDV 441



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 123/259 (47%), Gaps = 4/259 (1%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           DTI+        +  G++  A  I + +  P+   +N ++  Y  R  + + L LF +++
Sbjct: 176 DTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLR 235

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
              +  D +T+  +L  I  L  +  G  +   ++K G+D    V ++L+DMY +   VE
Sbjct: 236 EDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVE 295

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F  +  ++ V+WN MI+GY R       I  F +++   + +PD  T ++ L+AC
Sbjct: 296 NAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSAC 355

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +      +   E    + K+ G    +++  +++ +  + G +  A+ +  E+   +  +
Sbjct: 356 TALK-NLELGDEIHNYVRKELGFTTRIDN--ALLDMYAKCGCLNIARNIFDEMSMKNV-I 411

Query: 440 VWRALLSASGACSDLDVAR 458
            W +++S    C DL  AR
Sbjct: 412 CWTSMISGYINCGDLREAR 430



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 103/206 (50%), Gaps = 5/206 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++ +  LL   + LG     + +H Y+ ++    +V V TAL+  Y K   +  + ++
Sbjct: 474 PDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEI 533

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+      SW S+I G   +GK  +AL LF E+ER     D  +F   L+AC   G +
Sbjct: 534 FYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLV 593

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD----IISWNS 175
           + G    + + K + +E  V    C+ID+ G+ G +++A  +  E+  ++    +  + +
Sbjct: 594 EEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGA 653

Query: 176 VIAASARNGNLELAFGFLHRLPNPDT 201
           +++A   + N+++      +L N ++
Sbjct: 654 LLSACRIHNNVDMGERLAKKLENIES 679


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 160/555 (28%), Positives = 278/555 (50%), Gaps = 45/555 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +LR+ +        +++H ++++  F  +V V  AL+  Y K   +  A  +
Sbjct: 133 PDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARML 192

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P    +SWN++ISGY ++ +  + L LF  +    I  D  + TS ++AC  LG  
Sbjct: 193 FDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDE 252

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +HS +V+ + +  + + N LI MY   G  ++A  VF  M  +D++SW ++I+  
Sbjct: 253 RLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGC 312

Query: 181 ARN-----------------------------------GNLELAFGFLHRLPNPD----- 200
             N                                   G L++    LH L         
Sbjct: 313 VDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMK-LHELAERTGHILY 371

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +  N +I+  ++   IE A+ I   +P  +  SW S++ G    NR  EAL  F +M  
Sbjct: 372 VVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMIL 431

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           K  P +  T  + LS  A + AL  G  IH+  +K G+     + +A+LD+Y +CG++  
Sbjct: 432 KSKP-NSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRT 490

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A + F +L  K++  WN ++TGYA+ G    V+ELF+++    ++ PD VTF+++L ACS
Sbjct: 491 ALNQF-NLNEKDVGAWNILLTGYAQKGKGAMVMELFKRM-VESEINPDDVTFISLLCACS 548

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
            + +  + + EYF+ M  +Y I P ++H   ++ L+G+ G++  A   I  +       +
Sbjct: 549 RSGMVTEGL-EYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAI 607

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W ALL+A      + +  ++A  + K + +S   Y++LCNLY   G WD  + +R  M+E
Sbjct: 608 WGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKE 667

Query: 501 RGLRKEAGCSWIEVE 515
            GL  + GCSW+EV+
Sbjct: 668 EGLIVDPGCSWVEVK 682



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 184/385 (47%), Gaps = 41/385 (10%)

Query: 35  LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE 94
           L +V +  AL+  + +   + +A  +F  + +  + SWN L+ GY ++G + +AL L+  
Sbjct: 66  LLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHR 125

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           +  + I  D Y+F S L +C     L  G  +H+ +V++  +  V + N LI MY KCG 
Sbjct: 126 ILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGD 185

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPNPDTISYNEVING 210
           V  A  +F +M  +D ISWN++I+    N      LEL F       +PD ++   VI+ 
Sbjct: 186 VVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISA 245

Query: 211 IAQFGD-----------------------------------IEDAIMILSSMPSPNSSSW 235
               GD                                    ++A  + S M   +  SW
Sbjct: 246 CELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSW 305

Query: 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
            +I++G V+     +AL  +  M+      DE T +++LS  A L  L  GM +H    +
Sbjct: 306 TTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAER 365

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
            G    +VVA++L+DMYSKC ++E A  +F  +  K++++W ++I G   N    + +  
Sbjct: 366 TGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIF 425

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACS 380
           F   K +   +P+SVT ++ L+AC+
Sbjct: 426 FR--KMILKSKPNSVTLISALSACA 448



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 152/348 (43%), Gaps = 41/348 (11%)

Query: 73  NSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132
           NS +     SG   +AL     ++  +I  +   F + +  C        G  +   ++ 
Sbjct: 2   NSRLLQLCLSGNLEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVLS 61

Query: 133 YSLER-GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG 191
             +    V + N L+ M+ + G V +A  VFG M ++D+ SWN ++    + G  + A  
Sbjct: 62  SLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALC 121

Query: 192 FLHRL----PNPDTISYNEVINGIA----------------------------------- 212
             HR+      PD  ++  V+   A                                   
Sbjct: 122 LYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYV 181

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
           + GD+  A M+   MP+ +  SWN++++GY   +   E L LF  M+   +  D  T ++
Sbjct: 182 KCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTS 241

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332
           ++S    L     G  +HS V++   D +I V ++L+ MY   G  + A+S+F  +  ++
Sbjct: 242 VISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRD 301

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +V+W  +I+G   N    K +E ++ ++ +    PD VT  +VL+AC+
Sbjct: 302 VVSWTTIISGCVDNLLPDKALETYKTME-ITGTMPDEVTIASVLSACA 348


>gi|357138593|ref|XP_003570875.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 664

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 158/515 (30%), Positives = 269/515 (52%), Gaps = 38/515 (7%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV    A+M  Y +   +  A ++F  +P  + VSW ++ISGY++  + R+A  LF +L 
Sbjct: 135 NVVSWNAMMSGYLRNGMVERARELFDMMPSRNDVSWLTMISGYIKKRRLREARELF-DLS 193

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
            S   +   +  S   A   L  L+    +  ++ +    R  V  N +I  Y + G ++
Sbjct: 194 PSHPTSVCNALLSGYVA---LSCLKDAEELFGRMQR----RDPVSWNVMITGYARAGRMQ 246

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
            A  +F EM  KD ISW +V+    +NG+++ ++     +P+ D +++N ++ G  Q   
Sbjct: 247 VAQSLFDEMPQKDTISWTAVMRGYLQNGDVDASWKVFQDIPDRDVVAWNTMMGGFVQSER 306

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRV----------PE---------------- 250
           ++DA+ + + MP  +  SWN+IL G+V +  +          PE                
Sbjct: 307 LDDALRLFAEMPERDLVSWNTILQGHVQQGDMATANTWFRGMPEKDETSWNTLISGHKDE 366

Query: 251 -ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
            AL L  EM    +  DE T S ++S  A L AL +G ++H   +K G +   +V S+L+
Sbjct: 367 GALALLSEMIRGGLRPDEATLSVVISICASLVALGYGKMVHLYAVKTGFEHDALVMSSLI 426

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
            MYSKCG +  A  +F+ L +++ VTWNAMI  YA +G  ++ ++LF ++ T    +PD 
Sbjct: 427 SMYSKCGLIAEASQVFKLLVQRDTVTWNAMIATYAYHGMASEALKLFNKM-TKDGFRPDH 485

Query: 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429
            TFL+VL+AC+H    ++    YF SM +D+ + P  +H   M+ L+G+ G +++A    
Sbjct: 486 ATFLSVLSACAHKGDLYEGC-RYFRSMQEDWNLTPRSDHYSCMVDLLGRLGFIYQAYDFT 544

Query: 430 RELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD 489
           R++        W  L SA  A  D+ +  + A +V++       +Y +L N+Y S   W 
Sbjct: 545 RKIPSDLQINAWETLFSACNAHGDVQLGEVIAKDVLQARPSDGGMYTLLANIYASKEMWS 604

Query: 490 VASVMRNFMRERGLRKEAGCSWIEVE-NVAAHSSN 523
            A+ +R  M+E+GL+KE GCSW+E++  V + SSN
Sbjct: 605 SAASVRGVMKEQGLKKETGCSWVELKGEVVSFSSN 639



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 159/336 (47%), Gaps = 21/336 (6%)

Query: 30  LKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKAL 89
           L   FL     S  L GFY    SLA             +  WN++I+ ++++G+   A 
Sbjct: 8   LLQPFLRPHHSSIPLRGFY----SLAPPPDPAAPPYAVDIFQWNAVITAHLRAGRVAAAR 63

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
            +F E+    +      FT      G +G+  L  A   ++      R  V    L+  Y
Sbjct: 64  RVFDEMPERNV------FTWNCMISGLVGNRMLADA--RRVFDAMPVRNPVSWAALLTGY 115

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVIN 209
            +CG V +A  +F  M D++++SWN++++   RNG +E A      +P+ + +S+  +I+
Sbjct: 116 ARCGRVAEARELFDRMPDRNVVSWNAMMSGYLRNGMVERARELFDMMPSRNDVSWLTMIS 175

Query: 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
           G  +   + +A  +    PS  +S  N++L+GYV  + + +A  LFG MQ +    D  +
Sbjct: 176 GYIKKRRLREARELFDLSPSHPTSVCNALLSGYVALSCLKDAEELFGRMQRR----DPVS 231

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           ++ M++G A        M +   +  +      +  +A++  Y + G V+ +  +F+ + 
Sbjct: 232 WNVMITGYARAGR----MQVAQSLFDEMPQKDTISWTAVMRGYLQNGDVDASWKVFQDIP 287

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
            +++V WN M+ G+ ++  L   + LF ++   RDL
Sbjct: 288 DRDVVAWNTMMGGFVQSERLDDALRLFAEMPE-RDL 322



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 4/192 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  L  ++   + L    Y + +H Y +K+GF  +  V ++L+  Y K   +A+A ++
Sbjct: 382 PDEATLSVVISICASLVALGYGKMVHLYAVKTGFEHDALVMSSLISMYSKCGLIAEASQV 441

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + Q   V+WN++I+ Y   G   +AL LF ++ +     D  +F S L+AC   G L
Sbjct: 442 FKLLVQRDTVTWNAMIATYAYHGMASEALKLFNKMTKDGFRPDHATFLSVLSACAHKGDL 501

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD--IISWNSVI 177
             G     S    ++L       +C++D+ G+ G +  A   F   I  D  I +W ++ 
Sbjct: 502 YEGCRYFRSMQEDWNLTPRSDHYSCMVDLLGRLGFIYQAYD-FTRKIPSDLQINAWETLF 560

Query: 178 AASARNGNLELA 189
           +A   +G+++L 
Sbjct: 561 SACNAHGDVQLG 572


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 149/475 (31%), Positives = 260/475 (54%), Gaps = 11/475 (2%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           T L GF R  N L ++ ++F ++P  ++VSWN++IS YVQ  +  +A  LF E+      
Sbjct: 200 TMLSGFARNGNIL-ESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMPER--- 255

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            D+ S+T+ +    ++G L     + +++      R +     +I  Y +C  V++A   
Sbjct: 256 -DSVSWTTMINGYVRIGKLDEARELLNEMPY----RNIGAQTAMISGYIQCNKVDEARRF 310

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F E+   D++ WN++IA  A +G +  A     R+ N D +++N +I+  AQ G ++ A+
Sbjct: 311 FDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMISCYAQVGQMDRAV 370

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            I   M   +  SWNS++ G++   +  +AL  F  M  +    D+ +F+  LS  A ++
Sbjct: 371 KIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLSSCATIA 430

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL  G  +H  V+K G    +VV +AL+ MY+KCG++  A  +F  +C  ++++WN++I 
Sbjct: 431 ALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRILEAGLVFNGICHADVISWNSLIG 490

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYA NG   + ++LFE++ +   + PD VTF+ +L+AC+H  +  D   + F+ M+K Y 
Sbjct: 491 GYAINGYGKEALKLFEEMAS-EGMAPDEVTFIGILSACNHAGM-VDHGLKLFKCMSKVYA 548

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I+P  EH   M+ L+G+ G +  A  ++R +   +   VW ALL A  A  +L++ R++A
Sbjct: 549 IEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLGACRAHGNLELGRLAA 608

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++ + E      YV+L N++     W+    +R  M      KE GCSW+EV N
Sbjct: 609 HKLSEFEPHKTSNYVLLSNIHAEANRWNEVQEVRMLMNASSTVKEPGCSWVEVRN 663



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 186/386 (48%), Gaps = 38/386 (9%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL 95
            N     +++  Y K   +  A  +F ++P+ ++VSWN+++SGY+ +GK+ +A  LFV +
Sbjct: 4   KNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIM 63

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
            R     D +S+T  +    + G ++    +   +   S  +GV   N +I  Y K G V
Sbjct: 64  PRR----DLFSWTLMITCYTRNGEVEKARELFDSL-PCSYRKGVACWNAMISGYVKKGRV 118

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFG 215
            +A  +F EM  K++ISWNS++A   +N  + L   F + +   D +S+N +++G  Q G
Sbjct: 119 NEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVG 178

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV------------ 263
           D++ A         PN  SW ++L+G+     + E+  LF +M S+++            
Sbjct: 179 DLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQ 238

Query: 264 --PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS-----------IVVASALLD 310
              +DE   S +   +    +++W  +I+  V    LD +           I   +A++ 
Sbjct: 239 RCEIDEA--SRLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMIS 296

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370
            Y +C +V+ A   F  +   ++V WNAMI GYA +G + + + L     + R +  D V
Sbjct: 297 GYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCL-----SKRMVNKDMV 351

Query: 371 TFLNVLAACSHTDIPFDKVSEYFESM 396
           T+ N + +C       D+  + FE M
Sbjct: 352 TW-NTMISCYAQVGQMDRAVKIFEEM 376



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 183/351 (52%), Gaps = 17/351 (4%)

Query: 30  LKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKAL 89
           L   +   V    A++  Y K   + +A ++F E+P  +++SWNS+++GY Q+ K R  L
Sbjct: 94  LPCSYRKGVACWNAMISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGL 153

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
             F E++      D  S+   +    Q+G L        K  + + +  VV    ++  +
Sbjct: 154 EFFNEMDER----DVVSWNLMVDGFIQVGDLDSAW----KFFQETQKPNVVSWVTMLSGF 205

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVIN 209
            + G++ ++  +F +M  ++I+SWN++I+A  +   ++ A      +P  D++S+  +IN
Sbjct: 206 ARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMPERDSVSWTTMIN 265

Query: 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
           G  + G +++A  +L+ MP  N  +  ++++GY+  N+V EA   F E+ + DV      
Sbjct: 266 GYVRIGKLDEARELLNEMPYRNIGAQTAMISGYIQCNKVDEARRFFDEIGTWDV----VC 321

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           ++ M++G A    +   +    C+ K+ ++  +V  + ++  Y++ GQ++ A  +F  + 
Sbjct: 322 WNAMIAGYAHHGRINEAL----CLSKRMVNKDMVTWNTMISCYAQVGQMDRAVKIFEEMG 377

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            ++LV+WN++I G+  NG     ++ F  L      +PD ++F   L++C+
Sbjct: 378 ERDLVSWNSLIAGFMLNGQNLDALKSF-ALMGHEGKKPDQLSFACGLSSCA 427



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 162/326 (49%), Gaps = 23/326 (7%)

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
           E+  V  N +I +Y K G +  A  +F +M  ++++SWN++++    NG  + A+     
Sbjct: 3   EKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVI 62

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMP---SPNSSSWNSILTGYVNRNRVPEAL 252
           +P  D  S+  +I    + G++E A  +  S+P       + WN++++GYV + RV EA 
Sbjct: 63  MPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNEAK 122

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
            LF EM  K++     ++++ML+G      +  G+        +  +  +V  + ++D +
Sbjct: 123 RLFDEMPVKNL----ISWNSMLAGYTQNRKMRLGLEF----FNEMDERDVVSWNLMVDGF 174

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
            + G ++ A   F+   + N+V+W  M++G+ARNG++ +   LF+Q+ +       ++  
Sbjct: 175 IQVGDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPS------RNIVS 228

Query: 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
            N + +        D+ S  FE M +   +  T     +MI    + G++  A+ ++ E+
Sbjct: 229 WNAMISAYVQRCEIDEASRLFEEMPERDSVSWT-----TMINGYVRIGKLDEARELLNEM 283

Query: 433 GFGSYGVVWRALLSASGACSDLDVAR 458
            + + G    A++S    C+ +D AR
Sbjct: 284 PYRNIGAQ-TAMISGYIQCNKVDEAR 308



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 2/176 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            QLH  ++K G+L+ + V+ AL+  Y K   + +A  +F  I    V+SWNSLI GY  +
Sbjct: 436 NQLHQVVVKGGYLNYLVVNNALITMYAKCGRILEAGLVFNGICHADVISWNSLIGGYAIN 495

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK-YSLERGVVI 141
           G  ++AL LF E+    +  D  +F   L+AC   G +  G+ +   + K Y++E     
Sbjct: 496 GYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLKLFKCMSKVYAIEPLAEH 555

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNSVIAASARNGNLELAFGFLHRL 196
             C++D+ G+ G +++A  +   M  K     W +++ A   +GNLEL     H+L
Sbjct: 556 YACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLGACRAHGNLELGRLAAHKL 611


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  258 bits (658), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 159/529 (30%), Positives = 263/529 (49%), Gaps = 41/529 (7%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H  + + GF S++FV + L+ FY    S+ DA K+F E+ +  VVSW  +IS + Q G+
Sbjct: 144 VHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQCGQ 203

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           +   L    E++      +  +  S L+ACGQ+ ++  G+ +++++ +Y +E  V I N 
Sbjct: 204 WDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNA 263

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PD 200
           LI MY KCG + DA   F  M  ++  SWN++I    +NG  + A      + +    PD
Sbjct: 264 LIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPD 323

Query: 201 TISY-----------------------------------NEVINGIAQFGDIEDAIMILS 225
            I+                                    N +IN  A+ GD+  A +I  
Sbjct: 324 VITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFE 383

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           +M   +  SW +++ GYV   +   A +LF +M+ +DV   E    ++LS  + L AL  
Sbjct: 384 NMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDK 443

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  IHS + ++ +   + + SAL+DMY+KCG ++ A  +F  +  K  + WNAMI G A 
Sbjct: 444 GREIHSYIKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLAS 503

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
            G   + + LFEQL  +RD +PD++T   VL AC+H  +  D+   YF  M    GI P 
Sbjct: 504 QGQGKEAVALFEQLLKLRDPKPDAITLKVVLCACTHVGM-VDEGLHYFNLMLT-LGIVPD 561

Query: 406 VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465
            EH   ++ L+G+ G +  A   I+++      V+W +LL+A      +++ +I    +I
Sbjct: 562 NEHYGCIVDLLGRAGLLDEAYNFIQKMPIQPNPVIWGSLLAACRVHHRMELGKIIGQHII 621

Query: 466 KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
            L  +    +V++ NL+   G WD    +R  M  R + K  G S I+V
Sbjct: 622 DLAPNDVGAHVLISNLHAEEGQWDDVEQVRGMMGSRRVEKSPGHSSIQV 670



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 188/403 (46%), Gaps = 46/403 (11%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLAD---AHKMFVEIPQPSVVSWNSLISGYV 80
           +LH  ++++   S+  V+  L+       S  D   A K+F  + QP+ + WN +I GY 
Sbjct: 36  ELHGRLVRAHLGSDPCVAGRLVTLLASPVSRHDMPYARKVFDRMAQPTAIVWNCMIRGYN 95

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ---LGMAIHSKIVKYSLER 137
                  AL LF  + RS +  D Y+  +   +     S +    G A+H+ + +     
Sbjct: 96  SCHAPMDALELFRAMRRSGVSPDNYTMAAVAQSSAAFASWKGRATGDAVHALVQRIGFAS 155

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL- 196
            + + + LI+ YG   SVEDA  VF EM ++D++SW  +I+A A+ G  +     L  + 
Sbjct: 156 DLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQ 215

Query: 197 -----PNPDTI---------------------------------SYNEVINGIAQFGDIE 218
                PN  TI                                   N +I    + G + 
Sbjct: 216 SEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMS 275

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
           DA      MP  N+ SWN+++ G+V   +  EAL +F EM S  V  D  T  ++LS  A
Sbjct: 276 DAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYA 335

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            L  L  G  +H+ +    +   I++ ++L++MY+KCG +  A+ +F ++ R+++V+W A
Sbjct: 336 QLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTA 395

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           M+ GY +         LF+ +K VRD+    +  +++L+ACS 
Sbjct: 396 MVCGYVKGLQFRTAFNLFDDMK-VRDVMASEMALVSLLSACSQ 437



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 147/320 (45%), Gaps = 27/320 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L   + LG     + LH YI       ++ +  +L+  Y K   +A A  +
Sbjct: 322 PDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEII 381

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  +VSW +++ GYV+  ++R A NLF +++  ++ A   +  S L+AC QLG+L
Sbjct: 382 FENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGAL 441

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IHS I + S+   + + + L+DMY KCG ++ A  +F  M  K  ++WN++I   
Sbjct: 442 DKGREIHSYIKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGL 501

Query: 181 ARNGNLELAFGFLHRL-----PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PN 231
           A  G  + A     +L     P PD I+   V+      G +++ +   + M +    P+
Sbjct: 502 ASQGQGKEAVALFEQLLKLRDPKPDAITLKVVLCACTHVGMVDEGLHYFNLMLTLGIVPD 561

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
           +  +  I+        + EA +   +M  +  P                  + WG L+ +
Sbjct: 562 NEHYGCIVDLLGRAGLLDEAYNFIQKMPIQPNP------------------VIWGSLLAA 603

Query: 292 CVIKQGLDASIVVASALLDM 311
           C +   ++   ++   ++D+
Sbjct: 604 CRVHHRMELGKIIGQHIIDL 623



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 184/413 (44%), Gaps = 48/413 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+  +  LL A   +        ++  + + G  ++V +  AL+G Y K   ++DA K 
Sbjct: 221 PNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKT 280

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P  +  SWN+LI G+VQ+GK+++AL +F E+    +  D  +  S L+   QLG L
Sbjct: 281 FKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDL 340

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           Q G  +H+ I  + +   +++ N LI+MY KCG +  A  +F  M  +DI+SW +++   
Sbjct: 341 QQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGY 400

Query: 181 ARNGNLELAFGFLHRLPNPDTI--------------------------SY---------- 204
            +      AF     +   D +                          SY          
Sbjct: 401 VKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTDM 460

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE-MQS 260
              + +++  A+ G I+ A  I S M    + +WN+++ G  ++ +  EA+ LF + ++ 
Sbjct: 461 WLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLKL 520

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +D   D  T   +L     +  +  G+   + ++  G+         ++D+  + G ++ 
Sbjct: 521 RDPKPDAITLKVVLCACTHVGMVDEGLHYFNLMLTLGIVPDNEHYGCIVDLLGRAGLLDE 580

Query: 321 ADSMFRSL-CRKNLVTWNAMITG--YARNGDLTKVIELFEQLKTVRDLQPDSV 370
           A +  + +  + N V W +++         +L K+I      + + DL P+ V
Sbjct: 581 AYNFIQKMPIQPNPVIWGSLLAACRVHHRMELGKIIG-----QHIIDLAPNDV 628



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 96/197 (48%), Gaps = 10/197 (5%)

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275
           D+  A  +   M  P +  WN ++ GY + +   +AL LF  M+   V  D YT + +  
Sbjct: 68  DMPYARKVFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSPDNYTMAAVAQ 127

Query: 276 GIAGLSALTW-----GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
             A  +  +W     G  +H+ V + G  + + V S L++ Y     VE A  +F  +  
Sbjct: 128 SSAAFA--SWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHE 185

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
           +++V+W  MI+ +A+ G    V+   +++++    +P+ +T +++L+AC       DK  
Sbjct: 186 RDVVSWTLMISAFAQCGQWDNVLRSLDEMQS-EGTKPNKITIISLLSACGQVR-AVDK-G 242

Query: 391 EYFESMTKDYGIKPTVE 407
            +  +   +YGI+  V+
Sbjct: 243 LWVYARVDEYGIEADVD 259


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  258 bits (658), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 161/559 (28%), Positives = 278/559 (49%), Gaps = 47/559 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y L  + +A S L   T  +Q H  ++K     +++V T+L+G Y K   + D  K+
Sbjct: 116 PNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKV 175

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKAL---NLFVELERSEIYADAYSFTSALAACGQL 117
           F  +P+ +  +W++++SGY   G+  +A+   NLF+  E+ E     Y FT+ L++    
Sbjct: 176 FAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLR-EKEEGSDSDYVFTAVLSSLAAT 234

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
             + LG  IH   +K  L   V ++N L+ MY KC S+ +A  +F    D++ I+W++++
Sbjct: 235 IYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMV 294

Query: 178 AASARNGNLELAFGFLHRL------PNPDTI----------------------------- 202
              ++NG    A     R+      P+  TI                             
Sbjct: 295 TGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFE 354

Query: 203 ----SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
               +   +++  A+ G + DA      +   + + W S+++GYV  +   EAL L+  M
Sbjct: 355 RHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRM 414

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           ++  +  ++ T +++L   + L+ L  G  +H   IK G    + + SAL  MYSKCG +
Sbjct: 415 KTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSL 474

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           E  + +FR    K++V+WNAMI+G + NG   + +ELFE++     ++PD VTF+N+++A
Sbjct: 475 EDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEM-LAEGMEPDDVTFVNIISA 533

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH     ++   YF  M+   G+ P V+H   M+ L+ + G++  A+  I         
Sbjct: 534 CSHKGF-VERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGL 592

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW-DVASVMRNF 497
            +WR LLSA       ++   +  +++ L       YV L  +YT+ G   DV  V ++ 
Sbjct: 593 CLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKH- 651

Query: 498 MRERGLRKEAGCSWIEVEN 516
           MR  G+ KE GCSWIE++N
Sbjct: 652 MRANGVSKEVGCSWIELKN 670



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 191/402 (47%), Gaps = 45/402 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H  I+++G  + +  +  L+ FY K   LA AH +F  I    VVSWNSLI+GY Q+
Sbjct: 34  RAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQN 93

Query: 83  GKYRKA---LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
           G    +   + LF E+   +I  +AY+      A   L S  +G   H+ +VK S    +
Sbjct: 94  GGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDI 153

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA---FGFLHRL 196
            +   L+ MY K G VED + VF  M +++  +W+++++  A  G +E A   F    R 
Sbjct: 154 YVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLRE 213

Query: 197 PNPDTIS---YNEVI---------------------NGIAQFGDIEDAIM---------- 222
               + S   +  V+                     NG+  F  + +A++          
Sbjct: 214 KEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLN 273

Query: 223 ----ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
               +  S    NS +W++++TGY       EA+ LF  M S  +   EYT   +L+  +
Sbjct: 274 EACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACS 333

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            +  L  G  +HS ++K G +  +   +AL+DMY+K G +  A   F  L  +++  W +
Sbjct: 334 DICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTS 393

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +I+GY +N D  + + L+ ++KT   + P+  T  +VL ACS
Sbjct: 394 LISGYVQNSDNEEALILYRRMKTA-GIIPNDPTMASVLKACS 434



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 185/375 (49%), Gaps = 47/375 (12%)

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           ++E+     +    L    Q  +L  G A+H +I++      +  AN L++ Y KCG + 
Sbjct: 7   QTELNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLA 66

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR---------LPNPDTIS---- 203
            A  +F  +I KD++SWNS+I   ++NG +  ++  +           LPN  T++    
Sbjct: 67  KAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFK 126

Query: 204 -------------YNEVINGIAQFGDI----------------EDAIMILSSMPSPNSSS 234
                         + ++  ++ FGDI                ED + + + MP  N+ +
Sbjct: 127 AESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYT 186

Query: 235 WNSILTGYVNRNRVPEALHLFGE-MQSKDVPMD-EYTFSTMLSGIAGLSALTWGMLIHSC 292
           W+++++GY  R RV EA+ +F   ++ K+   D +Y F+ +LS +A    +  G  IH  
Sbjct: 187 WSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCI 246

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
            IK GL   + +++AL+ MYSKC  +  A  MF S   +N +TW+AM+TGY++NG+  + 
Sbjct: 247 TIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEA 306

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412
           ++LF ++ +   ++P   T + VL ACS  DI + +  +   S     G +  +    ++
Sbjct: 307 VKLFSRMFSA-GIKPSEYTIVGVLNACS--DICYLEEGKQLHSFLLKLGFERHLFATTAL 363

Query: 413 IRLMGQKGEVWRAQR 427
           + +  + G +  A++
Sbjct: 364 VDMYAKAGCLADARK 378


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  258 bits (658), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 152/519 (29%), Positives = 266/519 (51%), Gaps = 34/519 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYC-QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P+ +    LL      G    C ++LHC+++K G  SN++V  AL+  Y     +  A  
Sbjct: 132 PDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARG 191

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F    +  V SWN +ISGY +  +Y +++ L VE+ER+ +   + +    L+AC ++  
Sbjct: 192 VFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKD 251

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
             L   +H  + +   E  + + N L++ Y  CG ++ A+ +F  M              
Sbjct: 252 KDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSM-------------- 297

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
            AR                 D IS+  ++ G  + G+++ A      MP  +  SW  ++
Sbjct: 298 KAR-----------------DVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMI 340

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            GY+      E+L +F EMQS  +  DE+T  ++L+  A L +L  G  I + + K  + 
Sbjct: 341 DGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIK 400

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
             +VV +AL+DMY KCG  E A  +F  + +++  TW AM+ G A NG   + I++F Q+
Sbjct: 401 NDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQM 460

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           + +  +QPD +T+L VL+AC+H+ +  D+  ++F  M  D+ I+P++ H   M+ ++G+ 
Sbjct: 461 QDM-SIQPDDITYLGVLSACNHSGM-VDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRA 518

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G V  A  ++R++      +VW ALL AS   +D  +A ++A ++++LE D+  VY +LC
Sbjct: 519 GLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLC 578

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVA 518
           N+Y     W     +R  + +  ++K  G S IEV   A
Sbjct: 579 NIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFA 617



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 97/168 (57%), Gaps = 4/168 (2%)

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G +  A  +   +P P+   WN+++ G+   +   E + L+  M  + V  D +TF  +L
Sbjct: 82  GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141

Query: 275 SGIA-GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           +G+     AL  G  +H  V+K GL +++ V +AL+ MYS CG +++A  +F   C++++
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDL-QPDSVTFLNVLAACS 380
            +WN MI+GY R  +  + IEL  +++  R+L  P SVT L VL+ACS
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEME--RNLVSPTSVTLLLVLSACS 247


>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  257 bits (657), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 159/513 (30%), Positives = 278/513 (54%), Gaps = 47/513 (9%)

Query: 41  STALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF-------- 92
           +T L G Y K  ++  A ++F E+P+ +VVSWN+++SGY+ +G   KA+  F        
Sbjct: 156 NTMLSG-YAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDS 214

Query: 93  ----------------VELERSEI----------YADAYSFTSALAACGQLGSLQLGMAI 126
                           VE ER  +            DAY+  + +A  GQ G       +
Sbjct: 215 ASLRALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDAYN--TLIAGYGQKGMAYEARKL 272

Query: 127 HSKI-----VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
             +I       YS  R V+  N +I  Y + G +  A  +F +M+++D  SWN++I+   
Sbjct: 273 FDRIPLCCDCGYS-RRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYV 331

Query: 182 RNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTG 241
           +  +++ A     R+P PDT+S+N +I+G ++ G ++ A  +   +P  +  SWNS+++G
Sbjct: 332 QILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISG 391

Query: 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
           Y        A+++F +MQ +    D +T S++LS  AGL  L  G  IH  V K    A 
Sbjct: 392 YEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTK-AFIAD 450

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           + + ++L+ MYS+CG +  A  +F  +  ++++++WNAMI GYA +G  T+ ++LF+ +K
Sbjct: 451 LPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMK 510

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
              ++QP  +TF++VL AC+H  +  ++    F SM   +GIKP VEH  +++ ++G+ G
Sbjct: 511 QC-NVQPSYITFISVLNACAHAGL-IEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHG 568

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
           ++  A  +I  +       VW ALL A    +++++AR +A  ++KL+ +S   YV+L N
Sbjct: 569 QLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQPESSAPYVLLHN 628

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
           +Y   G WD A+ MR  M +  ++K+AG S ++
Sbjct: 629 MYADVGRWDDAAEMRTMMEKNNVQKDAGYSRVD 661



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 174/359 (48%), Gaps = 32/359 (8%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ-SGKY-RKALNLFVE 94
           N      ++  Y K   +  A ++F E+P   +VSWN ++SGY+   GK+  +A N+F +
Sbjct: 87  NTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQ 146

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           +  +    D  S+ + L+   + G++     + +++     ER VV  N ++  Y   G 
Sbjct: 147 MPET----DCVSWNTMLSGYAKSGTMDKAEELFNEMP----ERNVVSWNAMVSGYLMNGH 198

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNL----ELAFGFLHRLPNPDTI-SYNEVIN 209
           VE AI  F  M  +D  S  ++++   +N  L     +   +   +   D + +YN +I 
Sbjct: 199 VEKAIEFFKLMPKRDSASLRALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIA 258

Query: 210 GIAQFGDIEDAIMILSSMP--------SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           G  Q G   +A  +   +P          N  SWNS++  YV    +  A  LF +M   
Sbjct: 259 GYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKM--- 315

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  D ++++TM+SG   +      M   S +  +  +   +  + ++  +S+ G +++A
Sbjct: 316 -VERDTFSWNTMISGYVQI----LDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLA 370

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             +F+ +  K+LV+WN+MI+GY +N D    + +F Q++ +   +PD  T  ++L+AC+
Sbjct: 371 HDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQ-LEGKKPDRHTLSSILSACA 428



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 146/330 (44%), Gaps = 51/330 (15%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           +   + +A ++F      + ++WN +I+ YV+  +  KA  LF E+              
Sbjct: 69  RTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMP------------- 115

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS--VEDAIGVFGEMID 167
                                      R +V  N ++  Y  CG   VE A  +F +M +
Sbjct: 116 --------------------------NRDIVSWNLMLSGYISCGGKFVERARNMFDQMPE 149

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
            D +SWN++++  A++G ++ A    + +P  + +S+N +++G    G +E AI     M
Sbjct: 150 TDCVSWNTMLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLM 209

Query: 228 PSPNSSSWNSILTGYVNRNRVPEA---LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
           P  +S+S  ++++G +  +++ EA   L  +G    K   +D Y       G  G++   
Sbjct: 210 PKRDSASLRALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEA 269

Query: 285 WGML--IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
             +   I  C        +++  ++++  Y + G +  A  +F  +  ++  +WN MI+G
Sbjct: 270 RKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISG 329

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
           Y +  D+ +   LF ++      +PD++++
Sbjct: 330 YVQILDMKEASNLFSRMP-----EPDTLSW 354


>gi|297804224|ref|XP_002869996.1| putative protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315832|gb|EFH46255.1| putative protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1251

 Score =  257 bits (657), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 173/558 (31%), Positives = 279/558 (50%), Gaps = 48/558 (8%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
            PN +    + +A + L +  YC+ +H +++KS F S+VFV TA +  + K +SL  A K+
Sbjct: 646  PNNFTFPFVAKACARLAYIGYCEMVHTHLIKSPFWSDVFVGTATVDMFVKCDSLDYAAKV 705

Query: 61   FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            F  +P     +WN+++SG+ QSG   K  +LF E+   EI  D+ +  + + +     SL
Sbjct: 706  FERMPVRDATTWNAMLSGFCQSGHTDKVFSLFREMRLDEIPPDSVTVMTLIQSASFEKSL 765

Query: 121  QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI---DKDIISWNSVI 177
            +L   +H+  ++  ++    ++N  I  YGKCG ++ A  VF E I   D+ ++SWNSV 
Sbjct: 766  KLLKVMHAFGIRLGVDLQATVSNTWISAYGKCGDLDSAKLVF-EAIDRGDRTVVSWNSVF 824

Query: 178  AASARNGNLELAFGFLHRL--------------------PNPDTISYNEVINGIA----- 212
             A A  G    AFG  +RL                     NP T++   +I+  A     
Sbjct: 825  KAFAVFGEAFDAFGH-YRLMLRDEFKPDLSTFINLAASCQNPQTLTQGRLIHSHAIHLGT 883

Query: 213  ---------------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
                           + GD   A ++   MPS    SW  +++GY  +  + EAL LF  
Sbjct: 884  DQDIEAINTFISMYSKSGDSCSARLLFDIMPSRTCVSWTVMISGYAEKGDMDEALALFHA 943

Query: 258  MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA-SIVVASALLDMYSKCG 316
            M    V  D  T  +++SG     +L  G  I       G    +++V +AL+DMYSKCG
Sbjct: 944  MAKTGVNPDLVTLLSLISGCGKFGSLEIGKWIDGRADMYGCKKDNVMVCNALIDMYSKCG 1003

Query: 317  QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
             ++ A  +F +   K +VTW  MI GYA NG   + +ELF ++  + D +P+ +TFL VL
Sbjct: 1004 SIDEARDIFDNTSEKTMVTWTTMIAGYALNGIFLEAMELFSKMIDL-DYKPNHITFLAVL 1062

Query: 377  AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
             AC+H+    +K  EYF  M + Y I P ++H   M+ L+G+KG++  A  +I  +    
Sbjct: 1063 QACAHSG-SLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLDEALELIHNMSAKP 1121

Query: 437  YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
               +W ALLSA     ++ +A  +A  +  LE      YV + N+Y + G WD  + +R+
Sbjct: 1122 DAGIWGALLSACKIHRNVKIAEQAADSLFNLEPQMAAPYVEMSNIYAAAGMWDGFARIRS 1181

Query: 497  FMRERGLRKEAGCSWIEV 514
             M+   ++K  G S I+V
Sbjct: 1182 MMKLWNIKKYPGESVIQV 1199



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 151/354 (42%), Gaps = 44/354 (12%)

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
           SV +WN  +   V      ++L LF E++R     + ++F     AC +L  +     +H
Sbjct: 612 SVNAWNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMVH 671

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
           + ++K      V +    +DM+ KC S++ A  VF  M  +D  +WN++++   ++G+ +
Sbjct: 672 THLIKSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHTD 731

Query: 188 LAFGF-----LHRLPNPDTISY-----------------------------------NEV 207
             F       L  +P PD+++                                    N  
Sbjct: 732 KVFSLFREMRLDEIP-PDSVTVMTLIQSASFEKSLKLLKVMHAFGIRLGVDLQATVSNTW 790

Query: 208 INGIAQFGDIEDAIMILSSMPSPNSS--SWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
           I+   + GD++ A ++  ++   + +  SWNS+   +       +A   +  M   +   
Sbjct: 791 ISAYGKCGDLDSAKLVFEAIDRGDRTVVSWNSVFKAFAVFGEAFDAFGHYRLMLRDEFKP 850

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           D  TF  + +       LT G LIHS  I  G D  I   +  + MYSK G    A  +F
Sbjct: 851 DLSTFINLAASCQNPQTLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSGDSCSARLLF 910

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
             +  +  V+W  MI+GYA  GD+ + + LF  +     + PD VT L++++ C
Sbjct: 911 DIMPSRTCVSWTVMISGYAEKGDMDEALALFHAMAKT-GVNPDLVTLLSLISGC 963



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 35/227 (15%)

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
           ++WN  +   VNRN   E+L LF EM+      + +TF  +    A L+ + +  ++H+ 
Sbjct: 614 NAWNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMVHTH 673

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           +IK    + + V +A +DM+ KC  ++ A  +F  +  ++  TWNAM++G+ ++G   KV
Sbjct: 674 LIKSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHTDKV 733

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412
             LF +++ + ++ PDSVT + ++ + S                          E    +
Sbjct: 734 FSLFREMR-LDEIPPDSVTVMTLIQSAS-------------------------FEKSLKL 767

Query: 413 IRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARI 459
           +++M   G        IR LG      V    +SA G C DLD A++
Sbjct: 768 LKVMHAFG--------IR-LGVDLQATVSNTWISAYGKCGDLDSAKL 805


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  257 bits (657), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 162/525 (30%), Positives = 264/525 (50%), Gaps = 64/525 (12%)

Query: 22  CQQLHCYILKSGFLSNV-FVSTALMGFYRKINSLADAHKMFVEI---------------- 64
           C  LH   L++   S   FVS +L+  Y ++   ADA + F EI                
Sbjct: 125 CTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLA 184

Query: 65  ---------------PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
                          P   V+SW SLI+ Y ++ + R+A+  F  +    I  D  +  +
Sbjct: 185 KMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIA 244

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
            L+AC +L  L+LG ++H  + +  +     +   LIDMY KCG                
Sbjct: 245 VLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDF-------------- 290

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
                         G+ +  F  L R P P   S+N +I+G  + G ++ A  +   M  
Sbjct: 291 --------------GHAQQVFDALGRGPRPQ--SWNAIIDGYCKHGHVDVARSLFDEMEV 334

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            +  ++NS++TGY++  ++ EAL LF  M+  D+ +D +T   +L+  A L AL  G  +
Sbjct: 335 RDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRAL 394

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H+C+ ++ ++A I + +ALLDMY KCG+V+ A  +F+ + ++++ TW AMI G A NG  
Sbjct: 395 HACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMG 454

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409
              +E F Q++     QP+SV+++ VL ACSH+ +  ++   YF+ M   Y I P +EH 
Sbjct: 455 KAALEHFYQMR-CDGFQPNSVSYIAVLTACSHSCL-LNEGRLYFDEMRILYNIHPQIEHY 512

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469
             MI L+G+ G +  A  +++ +      V+W ++LSA      +D+A+ +A  ++KLE 
Sbjct: 513 GCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEP 572

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           D D VYV L N+Y     W+ AS +R  M ER ++K AG S I V
Sbjct: 573 DEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITV 617



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 144/314 (45%), Gaps = 73/314 (23%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +  +L A + L      + LH  + + G  ++  +  AL+  Y K      A ++
Sbjct: 237 PDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQV 296

Query: 61  FVEI---PQPS-----------------------------VVSWNSLISGYVQSGKYRKA 88
           F  +   P+P                              ++++NS+++GY+ SG+ R+A
Sbjct: 297 FDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREA 356

Query: 89  LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
           L LF+ + R ++  D ++  + L AC  LG+LQ G A+H+ I +  +E  + +   L+DM
Sbjct: 357 LLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDM 416

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISY 204
           Y KCG V++A  VF  M  +D+ +W ++IA  A NG  + A    +++      P+++SY
Sbjct: 417 YMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSY 476

Query: 205 -------------NE-----------------------VINGIAQFGDIEDAIMILSSMP 228
                        NE                       +I+ + + G +++A+ ++ +MP
Sbjct: 477 IAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMP 536

Query: 229 -SPNSSSWNSILTG 241
             PN+  W SIL+ 
Sbjct: 537 IQPNAVIWASILSA 550



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 96/190 (50%), Gaps = 2/190 (1%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + + + +LL A + LG     + LH  I +    +++++ TAL+  Y K   + +A  +F
Sbjct: 371 DNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVF 430

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             + +  V +W ++I+G   +G  + AL  F ++       ++ S+ + L AC     L 
Sbjct: 431 QRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLN 490

Query: 122 LGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
            G     ++ + Y++   +    C+ID+ G+ G +++A+ +   M I  + + W S+++A
Sbjct: 491 EGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSA 550

Query: 180 SARNGNLELA 189
              + +++LA
Sbjct: 551 CRVHKHIDLA 560



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 120/305 (39%), Gaps = 45/305 (14%)

Query: 194 HRLPNPDTISY--NEVINGIAQFG-DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE 250
           H L +P +  +  N ++N +      +  A+ +   MP P++  +++ L         P 
Sbjct: 27  HLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMP-PSTFLFDTALRACSRAGSDPH 85

Query: 251 -ALHLFGEMQSKDVPMDEYTFSTMLSGIAGL----SALTWGMLIHSCVIKQGLDASIVVA 305
               LF  M+   V  D +TF  +    +      S L   ML  +C+      A+  V+
Sbjct: 86  RPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVS 145

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD- 364
           ++L+ MY + G    A   F  +  K+ V W  +I+G A+ G L     L  Q   VRD 
Sbjct: 146 NSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQ-APVRDV 204

Query: 365 ------------------------------LQPDSVTFLNVLAACSH-TDIPFDKVSEYF 393
                                         + PD VT + VL+AC+   D+   ++    
Sbjct: 205 ISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDL---ELGRSL 261

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD 453
             + ++ G+  +     ++I +  + G+   AQ++   LG G     W A++        
Sbjct: 262 HLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGH 321

Query: 454 LDVAR 458
           +DVAR
Sbjct: 322 VDVAR 326


>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
 gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
          Length = 1260

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 173/564 (30%), Positives = 288/564 (51%), Gaps = 47/564 (8%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
            PN +    + +A + L     C+ +H +++KS F S+VFV TA +  + K NS+  A K+
Sbjct: 656  PNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKV 715

Query: 61   FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            F  +P+    +WN+++SG+ QSG   KA +LF E+  +EI  D+ +  + + +     SL
Sbjct: 716  FERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSL 775

Query: 121  QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI---DKDIISWNSVI 177
            +L  A+H+  ++  ++  V +AN  I  YGKCG ++ A  VF E I   D+ ++SWNS+ 
Sbjct: 776  KLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVF-EAIDRGDRTVVSWNSMF 834

Query: 178  AASARNGNLELAFG----------------FLH---RLPNPDTISYNEVING-------- 210
             A +  G    AFG                F++      NP+T++   +I+         
Sbjct: 835  KAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTD 894

Query: 211  ---------IAQFGDIED---AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
                     I+ +   ED   A ++   M S    SW  +++GY  +  + EAL LF  M
Sbjct: 895  QDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAM 954

Query: 259  QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA-SIVVASALLDMYSKCGQ 317
                   D  T  +++SG     +L  G  I +     G    ++++ +AL+DMYSKCG 
Sbjct: 955  IKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGS 1014

Query: 318  VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
            +  A  +F +   K +VTW  MI GYA NG   + ++LF ++  + D +P+ +TFL VL 
Sbjct: 1015 IHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDL-DYKPNHITFLAVLQ 1073

Query: 378  ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
            AC+H+    +K  EYF  M + Y I P ++H   M+ L+G+KG++  A  +IR +     
Sbjct: 1074 ACAHSG-SLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPD 1132

Query: 438  GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497
              +W ALL+A     ++ +A  +A  +  LE      YV + N+Y + G WD  + +R+ 
Sbjct: 1133 AGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSI 1192

Query: 498  MRERGLRKEAGCSWIEVENVAAHS 521
            M++R ++K  G S I+V N   HS
Sbjct: 1193 MKQRNIKKYPGESVIQV-NGKNHS 1215



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
           SV +WN  I   V      ++L LF E++R     + ++F     AC +L  +     +H
Sbjct: 622 SVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVH 681

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
           + ++K      V +    +DM+ KC SV+ A  VF  M ++D  +WN++++   ++G+ +
Sbjct: 682 AHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTD 741

Query: 188 LAFGFLHRLP----NPDTISY-----------------------------------NEVI 208
            AF     +      PD+++                                    N  I
Sbjct: 742 KAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWI 801

Query: 209 NGIAQFGDIEDAIMILSSMPSPNSS--SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
           +   + GD++ A ++  ++   + +  SWNS+   Y       +A  L+  M  ++   D
Sbjct: 802 STYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPD 861

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
             TF  + +       LT G LIHS  I  G D  I   +  + MYSK      A  +F 
Sbjct: 862 LSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFD 921

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            +  +  V+W  MI+GYA  GD+ + + LF  +    + +PD VT L++++ C
Sbjct: 922 IMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGE-KPDLVTLLSLISGC 973



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 111/219 (50%), Gaps = 10/219 (4%)

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
           ++WN  +   VNRN   E+L LF EM+      + +TF  +    A L+ +    ++H+ 
Sbjct: 624 NAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAH 683

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           +IK    + + V +A +DM+ KC  V+ A  +F  +  ++  TWNAM++G+ ++G   K 
Sbjct: 684 LIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKA 743

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK---DYGIKPTVEHC 409
             LF +++ + ++ PDSVT + ++ + S     F+K  +  E+M       G+   V   
Sbjct: 744 FSLFREMR-LNEITPDSVTVMTLIQSAS-----FEKSLKLLEAMHAVGIRLGVDVQVTVA 797

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVV-WRALLSA 447
            + I   G+ G++  A+ +   +  G   VV W ++  A
Sbjct: 798 NTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKA 836


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 162/525 (30%), Positives = 264/525 (50%), Gaps = 64/525 (12%)

Query: 22  CQQLHCYILKSGFLSNV-FVSTALMGFYRKINSLADAHKMFVEI---------------- 64
           C  LH   L++   S   FVS +L+  Y ++   ADA + F EI                
Sbjct: 125 CTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLA 184

Query: 65  ---------------PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
                          P   V+SW SLI+ Y ++ + R+A+  F  +    I  D  +  +
Sbjct: 185 KMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIA 244

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
            L+AC +L  L+LG ++H  + +  +     +   LIDMY KCG                
Sbjct: 245 VLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDF-------------- 290

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
                         G+ +  F  L R P P   S+N +I+G  + G ++ A  +   M  
Sbjct: 291 --------------GHAQQVFDALGRGPRPQ--SWNAIIDGYCKHGHVDVARSLFDEMEV 334

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            +  ++NS++TGY++  ++ EAL LF  M+  D+ +D +T   +L+  A L AL  G  +
Sbjct: 335 RDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRAL 394

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H+C+ ++ ++A I + +ALLDMY KCG+V+ A  +F+ + ++++ TW AMI G A NG  
Sbjct: 395 HACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMG 454

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409
              +E F Q++     QP+SV+++ VL ACSH+ +  ++   YF+ M   Y I P +EH 
Sbjct: 455 KAALEHFYQMR-CDGFQPNSVSYIAVLTACSHSCL-LNEGRLYFDEMRILYNIHPQIEHY 512

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469
             MI L+G+ G +  A  +++ +      V+W ++LSA      +D+A+ +A  ++KLE 
Sbjct: 513 GCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEP 572

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           D D VYV L N+Y     W+ AS +R  M ER ++K AG S I V
Sbjct: 573 DEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITV 617



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 144/314 (45%), Gaps = 73/314 (23%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +  +L A + L      + LH  + + G  ++  +  AL+  Y K      A ++
Sbjct: 237 PDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQV 296

Query: 61  FVEI---PQPS-----------------------------VVSWNSLISGYVQSGKYRKA 88
           F  +   P+P                              ++++NS+++GY+ SG+ R+A
Sbjct: 297 FDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREA 356

Query: 89  LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
           L LF+ + R ++  D ++  + L AC  LG+LQ G A+H+ I +  +E  + +   L+DM
Sbjct: 357 LLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDM 416

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISY 204
           Y KCG V++A  VF  M  +D+ +W ++IA  A NG  + A    +++      P+++SY
Sbjct: 417 YMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSY 476

Query: 205 -------------NE-----------------------VINGIAQFGDIEDAIMILSSMP 228
                        NE                       +I+ + + G +++A+ ++ +MP
Sbjct: 477 IAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMP 536

Query: 229 -SPNSSSWNSILTG 241
             PN+  W SIL+ 
Sbjct: 537 IQPNAVIWASILSA 550



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 96/190 (50%), Gaps = 2/190 (1%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + + + +LL A + LG     + LH  I +    +++++ TAL+  Y K   + +A  +F
Sbjct: 371 DNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVF 430

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             + +  V +W ++I+G   +G  + AL  F ++       ++ S+ + L AC     L 
Sbjct: 431 QRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLN 490

Query: 122 LGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
            G     ++ + Y++   +    C+ID+ G+ G +++A+ +   M I  + + W S+++A
Sbjct: 491 EGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSA 550

Query: 180 SARNGNLELA 189
              + +++LA
Sbjct: 551 CRVHKHIDLA 560



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 120/305 (39%), Gaps = 45/305 (14%)

Query: 194 HRLPNPDTISY--NEVINGIAQFG-DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE 250
           H L +P +  +  N ++N +      +  A+ +   MP P++  +++ L         P 
Sbjct: 27  HLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMP-PSTFLFDTALRACSRAGSDPH 85

Query: 251 -ALHLFGEMQSKDVPMDEYTFSTMLSGIAGL----SALTWGMLIHSCVIKQGLDASIVVA 305
               LF  M+   V  D +TF  +    +      S L   ML  +C+      A+  V+
Sbjct: 86  RPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVS 145

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD- 364
           ++L+ MY + G    A   F  +  K+ V W  +I+G A+ G L     L  Q   VRD 
Sbjct: 146 NSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQ-APVRDV 204

Query: 365 ------------------------------LQPDSVTFLNVLAACSH-TDIPFDKVSEYF 393
                                         + PD VT + VL+AC+   D+   ++    
Sbjct: 205 ISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDL---ELGRSL 261

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD 453
             + ++ G+  +     ++I +  + G+   AQ++   LG G     W A++        
Sbjct: 262 HLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGH 321

Query: 454 LDVAR 458
           +DVAR
Sbjct: 322 VDVAR 326


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 158/553 (28%), Positives = 284/553 (51%), Gaps = 41/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +VL   + A S LG+    +Q H Y  +    ++  V  AL+  Y K + L+ A K+
Sbjct: 213 PDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKL 272

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   ++VSW ++I+GY+Q+    +A+ +F +L +     D ++  S L +CG L ++
Sbjct: 273 FDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAI 332

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H+  +K +LE    + N LIDMY KC  + +A  VF  + + D IS+N++I   
Sbjct: 333 WQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGY 392

Query: 181 ARNGNLELAFGFLHRL------PNPDT-------------ISYNEVINGI---------- 211
           +R G+L  A     ++      P+P T             I  ++ I+G+          
Sbjct: 393 SRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDL 452

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     ++F  +EDA  + + M + +   WN+++ G     +  EA+ LF ++Q  
Sbjct: 453 YAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVS 512

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  +E+TF  +++  + L ++  G   H+ +IK G D+   V++AL+DMY+KCG ++  
Sbjct: 513 GLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEG 572

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F S   K+++ WN+MI+ YA++G   + + +F  +     ++P+ VTF+ VL+AC+H
Sbjct: 573 RLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGT-GVEPNYVTFVGVLSACAH 631

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  D+   +F+ M   Y I+P  EH  S++ L G+ G++  A+  I  +       VW
Sbjct: 632 AGL-VDEGLRHFDFMKTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPAAAVW 690

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R+LLSA     ++++ R +    +  +       V++ N+Y S G W  A  +R  M   
Sbjct: 691 RSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASRGLWSDAQKLRQGMDCA 750

Query: 502 GLRKEAGCSWIEV 514
           G+ KE G SWIEV
Sbjct: 751 GVVKEPGYSWIEV 763



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 122/485 (25%), Positives = 225/485 (46%), Gaps = 43/485 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE++L   LRA +     ++ QQ+H   ++ G   NV+V TAL+  Y K+  +  A  +
Sbjct: 112 PNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLV 171

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P  + V+W ++I+GY Q G+   AL LF ++    +  D +   SA++AC  LG L
Sbjct: 172 FDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFL 231

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G   H    + ++E    + N LID+Y KC  +  A  +F  M +++++SW ++IA  
Sbjct: 232 EGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGY 291

Query: 181 ARNGNLELAFGFLHRLP----NPDTIS--------------------------------- 203
            +N     A     +L      PD  +                                 
Sbjct: 292 MQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDE 351

Query: 204 --YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+  A+   + +A  +  ++   ++ S+N+++ GY     +  A+ +F +M+  
Sbjct: 352 YVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYC 411

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +     TF ++L   +  SA+     IH  ++K G    +   S+L+D+YSK   VE A
Sbjct: 412 SLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDA 471

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            ++F  +  +++V WNAMI G A+N    + ++LF QL+ V  L P+  TF+ ++   S 
Sbjct: 472 KAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQ-VSGLAPNEFTFVALVTVAST 530

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
               F    + F +     G         ++I +  + G + +  R++ E   G   + W
Sbjct: 531 LVSMFH--GQQFHAQIIKAGADSDHHVSNALIDMYAKCGFI-KEGRLLFESTLGKDVICW 587

Query: 442 RALLS 446
            +++S
Sbjct: 588 NSMIS 592



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 195/396 (49%), Gaps = 42/396 (10%)

Query: 26  HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKY 85
           H   + +G L ++F++  L+  Y K+  + DA ++F  +P  ++VSW S IS + Q G  
Sbjct: 34  HARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCE 93

Query: 86  RKALNLFVELERSE--IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
             A+ LF   +R+      + +   SAL AC Q  ++  G  +H   V+  L+  V +  
Sbjct: 94  EDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGT 153

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LEL----------- 188
            LI++Y K G ++ A+ VF  +  K+ ++W +VI   ++ G     LEL           
Sbjct: 154 ALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRP 213

Query: 189 -------------AFGFL----------HRLP-NPDTISYNEVINGIAQFGDIEDAIMIL 224
                        A GFL          +R+    D    N +I+   +   +  A  + 
Sbjct: 214 DRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLF 273

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             M + N  SW +++ GY+  +   EA+ +F ++  +    D +  +++L+    L+A+ 
Sbjct: 274 DCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIW 333

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  +H+  IK  L++   V ++L+DMY+KC  +  A ++F +L   + +++NAMI GY+
Sbjct: 334 QGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYS 393

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           R GDL   I++F +++    L+P  +TF+++L   S
Sbjct: 394 RLGDLAGAIDVFSKMRYC-SLKPSPLTFVSLLGVSS 428



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
           L H+  +  G    + +A+ LL  YSK G+V  A  +F  +  KNLV+W + I+ +A++G
Sbjct: 32  LAHARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHG 91

Query: 348 DLTKVIELFEQLKTVRDLQ-PDSVTFLNVLAACSHT 382
                + LF   +     + P+     + L AC+ +
Sbjct: 92  CEEDAVALFAAFQRASGGEAPNEFLLASALRACAQS 127


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 166/555 (29%), Positives = 270/555 (48%), Gaps = 41/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      +L  S       Y +QLH  +++SG      V   L+  Y K   L DA K+
Sbjct: 109 PDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKL 168

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +PQ  +V WN +I GYVQ+G    A  LF E+  + I  D+ +FTS L +  +  SL
Sbjct: 169 FDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSL 228

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +    IH  IV++ +   V + + LID+Y KC     A  +F      DI+ + ++I+  
Sbjct: 229 KQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGY 288

Query: 181 ARNG----NLELAFGFLHRLPNPDTISYNEVI---------------------------- 208
             NG     LE+    L +   P+ ++++ ++                            
Sbjct: 289 VLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKC 348

Query: 209 -------NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                  N  A+ G ++ A +I   +   ++  WNSI+T +    +  EA++LF +M  +
Sbjct: 349 PVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGME 408

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  D  T S  LS  A + AL +G  IH  +IK   ++ +   SAL++MY+KCG++ IA
Sbjct: 409 GVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIA 468

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  KN V WN++I  Y  +G L   + LF  +     +QPD +TFL +L++C H
Sbjct: 469 RLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLE-EGIQPDHITFLTILSSCGH 527

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
                D V  YF  MT++YGI   +EH   M  L G+ G +  A  +I  + F     VW
Sbjct: 528 AGQVEDGV-RYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVW 586

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
             LL A     ++++A +++  ++ LE  +   Y++L ++    G W     +++ M+ER
Sbjct: 587 GTLLGACRVHGNVELAEVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQHLMKER 646

Query: 502 GLRKEAGCSWIEVEN 516
           G++K  GCSWIEV N
Sbjct: 647 GVQKVPGCSWIEVNN 661



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/488 (23%), Positives = 233/488 (47%), Gaps = 43/488 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++Y    +++  + L      + +   IL+ GF  ++FV+++L+  Y     + DA + 
Sbjct: 8   PDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRF 67

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++     V WN +I+GYVQ G+   A+ LF ++  SE   D+ +F   L+       +
Sbjct: 68  FDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMV 127

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H  +V+  L+   ++ N L+ +Y K   + DA  +F  M   D++ WN +I   
Sbjct: 128 EYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGY 187

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIE------------------ 218
            +NG ++ A    + + +    PD+I++   +  +A+   ++                  
Sbjct: 188 VQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDV 247

Query: 219 --------------DAIM---ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                         DA+M   + +     +   + ++++GYV      +AL +F  +  K
Sbjct: 248 YLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQK 307

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  +  TFS++L   AGL+A+  G  +H  +IK  L+    V SA+++MY+KCG++++A
Sbjct: 308 KMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLA 367

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  K+ + WN++IT ++++G   + I LF Q+  +  ++ D VT    L+AC+ 
Sbjct: 368 HLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQM-GMEGVKYDCVTVSAALSACA- 425

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
            +IP     +           +  +    ++I +  + G++  A R++  L      V W
Sbjct: 426 -NIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIA-RLVFNLMQEKNEVAW 483

Query: 442 RALLSASG 449
            ++++A G
Sbjct: 484 NSIIAAYG 491



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/474 (24%), Positives = 204/474 (43%), Gaps = 73/474 (15%)

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159
           ++ D Y+F   +  C  L +++LG  I   I++   +  + +A+ LI +Y   G +EDA 
Sbjct: 6   VFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDAR 65

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVIN-----G 210
             F +MIDKD + WN +I    + G  + A      +      PD++++  V++      
Sbjct: 66  RFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEA 125

Query: 211 IAQFG------------------------------DIEDAIMILSSMPSPNSSSWNSILT 240
           + ++G                               + DA  +   MP  +   WN ++ 
Sbjct: 126 MVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIG 185

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GYV    + +A  LF EM S  +  D  TF++ L  +A  S+L     IH  +++ G+  
Sbjct: 186 GYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVIL 245

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
            + + SAL+D+Y KC    +A  MF    + ++V + AMI+GY  NG     +E+F  L 
Sbjct: 246 DVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLL 305

Query: 361 TVRDLQPDSVTFLNVLAACS-----------HTDIPFDKVSE-----------YFESMTK 398
             + + P+++TF ++L AC+           H  I  +++ E           Y +    
Sbjct: 306 Q-KKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRL 364

Query: 399 D-----YGIKPTVEHCC--SMIRLMGQKGEVWRAQRMIRELGFGSYG---VVWRALLSAS 448
           D     +G     +  C  S+I    Q G+   A  + R++G        V   A LSA 
Sbjct: 365 DLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSAC 424

Query: 449 GACSDLDVARISAAEVIKLEGDSD-YVYVMLCNLYTSHGNWDVASVMRNFMRER 501
                L   +     +IK   +SD +    L N+Y   G  ++A ++ N M+E+
Sbjct: 425 ANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEK 478


>gi|280967731|gb|ACZ98537.1| PPR motif protein [Malus x domestica]
          Length = 751

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 163/522 (31%), Positives = 277/522 (53%), Gaps = 10/522 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P +  L   L AS++LG     +Q H   +  G      + ++L+ FY K+  + DA  +
Sbjct: 198 PTQVTLSSFLSASANLGALQDGKQGHAIAVICGIEMTTNLGSSLINFYSKVGLIEDAESV 257

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  VV+WN LISGYVQ G+  KALN+   +    +  D+ +  + ++A   + +L
Sbjct: 258 FSRMLEKDVVTWNLLISGYVQIGEVDKALNMCHLMRLENLRFDSVTLATLMSAFADMRNL 317

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG   H   ++ +LE  VV+ + ++DMY KC  +  A  VF   I KD+I WN+++AA 
Sbjct: 318 KLGKEGHCYCIRNNLESDVVVVSSIVDMYAKCEKIGCARRVFNSSITKDLILWNTMLAAF 377

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PNS 232
           A  G+   A    +++      P+ IS+N +I G    G + +A  +   M S    PN 
Sbjct: 378 AELGHSGEALNLFYQMQLESVPPNVISWNSLILGFLNSGQVNEAKDMFLQMQSLGVQPNL 437

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
            +W ++++G        EA+  F  MQ   V  +  +   +L     L++L  G  +H  
Sbjct: 438 VTWTTLISGLARSGFGYEAILTFQRMQEAGVKPNVVSIIGVLLACINLASLQIGRALHGY 497

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           +I+  L  SI +A++L+DMY+KCG  + A  +F  +  K L  +NAMI+G+A +G   + 
Sbjct: 498 LIRHSLYLSIPIATSLVDMYAKCGDRDQAKRVFDMIPDKELPIYNAMISGFALHGQAVEA 557

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412
           + L+  LK    L+PD++TF N L ACSH  +  + + E F  M  ++ I P++EH   M
Sbjct: 558 LALYRCLKE-EGLKPDNITFTNALYACSHAMMVSEGL-ELFVDMVSNHNINPSIEHYGCM 615

Query: 413 IRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472
           + L+ + G++  A  +I  + +     +  +LL+A    + +++    + +++KL+ D+ 
Sbjct: 616 VSLLSRCGDLDEAFGLISAMPYKPDVQILGSLLAACREHNKIELEEYLSNQLLKLQPDNS 675

Query: 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
             YV + N Y + G WD    +R  M+ERGLRK  GCSWI+V
Sbjct: 676 GNYVAMSNAYAAAGRWDEVKKVRQLMKERGLRKIPGCSWIQV 717



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 128/517 (24%), Positives = 252/517 (48%), Gaps = 44/517 (8%)

Query: 23  QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H  I+K G  F  N ++ T L+ FY K ++   ++ +F  +   +V SW ++I    
Sbjct: 30  RQIHAQIVKKGAIFAMNEYIETKLVIFYAKCDNPEASNSLFRRVRLKNVFSWAAVIGLNC 89

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKI---------- 130
           + G Y++AL  F E++ + +  D +   + L ACG L  +++G  +H  +          
Sbjct: 90  RKGFYQEALLGFKEMQENGLLPDNFVLPNVLKACGGLEWIRIGKVVHGLVSCGYVWKMWG 149

Query: 131 -------VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI----ISWNSVIAA 179
                  V    +R  V  N +I  Y + G  E+AI VF EM ++ +    ++ +S ++A
Sbjct: 150 GGGCKKGVCGMPQRNAVAWNSMIVGYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSA 209

Query: 180 SARNGNLE-----LAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSS 234
           SA  G L+      A   +  +     +  + +IN  ++ G IEDA  + S M   +  +
Sbjct: 210 SANLGALQDGKQGHAIAVICGIEMTTNLG-SSLINFYSKVGLIEDAESVFSRMLEKDVVT 268

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
           WN +++GYV    V +AL++   M+ +++  D  T +T++S  A +  L  G   H   I
Sbjct: 269 WNLLISGYVQIGEVDKALNMCHLMRLENLRFDSVTLATLMSAFADMRNLKLGKEGHCYCI 328

Query: 295 KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
           +  L++ +VV S+++DMY+KC ++  A  +F S   K+L+ WN M+  +A  G   + + 
Sbjct: 329 RNNLESDVVVVSSIVDMYAKCEKIGCARRVFNSSITKDLILWNTMLAAFAELGHSGEALN 388

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
           LF Q++ +  + P+ +++ +++    ++    ++  + F  M +  G++P +    ++I 
Sbjct: 389 LFYQMQ-LESVPPNVISWNSLILGFLNSG-QVNEAKDMFLQM-QSLGVQPNLVTWTTLIS 445

Query: 415 LMGQKGEVWRA----QRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            + + G  + A    QRM +E G     V    +L A    + L + R     +I+    
Sbjct: 446 GLARSGFGYEAILTFQRM-QEAGVKPNVVSIIGVLLACINLASLQIGRALHGYLIR---H 501

Query: 471 SDYVYV----MLCNLYTSHGNWDVASVMRNFMRERGL 503
           S Y+ +     L ++Y   G+ D A  + + + ++ L
Sbjct: 502 SLYLSIPIATSLVDMYAKCGDRDQAKRVFDMIPDKEL 538



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 190/391 (48%), Gaps = 31/391 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +VL ++L+A   L W    + +H      G +S         G+  K+       K 
Sbjct: 111 PDNFVLPNVLKACGGLEWIRIGKVVH------GLVS--------CGYVWKMWGGGGCKKG 156

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
              +PQ + V+WNS+I GYVQ+G   +A+ +F E+    +     + +S L+A   LG+L
Sbjct: 157 VCGMPQRNAVAWNSMIVGYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSASANLGAL 216

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           Q G   H+  V   +E    + + LI+ Y K G +EDA  VF  M++KD+++WN +I+  
Sbjct: 217 QDGKQGHAIAVICGIEMTTNLGSSLINFYSKVGLIEDAESVFSRMLEKDVVTWNLLISGY 276

Query: 181 ARNGNLELAFGFLH--RLPNP--DTISYNEVINGIAQFGDI----EDAIMILSSMPSPNS 232
            + G ++ A    H  RL N   D+++   +++  A   ++    E     + +    + 
Sbjct: 277 VQIGEVDKALNMCHLMRLENLRFDSVTLATLMSAFADMRNLKLGKEGHCYCIRNNLESDV 336

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
              +SI+  Y    ++  A  +F    +KD+ +    ++TML+  A L      + +   
Sbjct: 337 VVVSSIVDMYAKCEKIGCARRVFNSSITKDLIL----WNTMLAAFAELGHSGEALNLFYQ 392

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL----CRKNLVTWNAMITGYARNGD 348
           +  + +  +++  ++L+  +   GQV  A  MF  +     + NLVTW  +I+G AR+G 
Sbjct: 393 MQLESVPPNVISWNSLILGFLNSGQVNEAKDMFLQMQSLGVQPNLVTWTTLISGLARSGF 452

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
             + I  F++++    ++P+ V+ + VL AC
Sbjct: 453 GYEAILTFQRMQEA-GVKPNVVSIIGVLLAC 482



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 153/317 (48%), Gaps = 38/317 (11%)

Query: 93  VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA------NCLI 146
           +EL+   I  + Y     L  C    +L  G  IH++IVK    +G + A        L+
Sbjct: 1   MELKNLRIGPEVYG--ELLQGCVYERALHTGRQIHAQIVK----KGAIFAMNEYIETKLV 54

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF-GFLHRLPN---PDT- 201
             Y KC + E +  +F  +  K++ SW +VI  + R G  + A  GF     N   PD  
Sbjct: 55  IFYAKCDNPEASNSLFRRVRLKNVFSWAAVIGLNCRKGFYQEALLGFKEMQENGLLPDNF 114

Query: 202 --------------ISYNEVINGIAQFGDI------EDAIMILSSMPSPNSSSWNSILTG 241
                         I   +V++G+   G +            +  MP  N+ +WNS++ G
Sbjct: 115 VLPNVLKACGGLEWIRIGKVVHGLVSCGYVWKMWGGGGCKKGVCGMPQRNAVAWNSMIVG 174

Query: 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
           YV      EA+ +F EM+ + V   + T S+ LS  A L AL  G   H+  +  G++ +
Sbjct: 175 YVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSASANLGALQDGKQGHAIAVICGIEMT 234

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
             + S+L++ YSK G +E A+S+F  +  K++VTWN +I+GY + G++ K + +   L  
Sbjct: 235 TNLGSSLINFYSKVGLIEDAESVFSRMLEKDVVTWNLLISGYVQIGEVDKALNMC-HLMR 293

Query: 362 VRDLQPDSVTFLNVLAA 378
           + +L+ DSVT   +++A
Sbjct: 294 LENLRFDSVTLATLMSA 310


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 147/477 (30%), Positives = 255/477 (53%), Gaps = 20/477 (4%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A ++F ++    V+SWNS+ISGYV +G   + L ++ ++    I  D  +  S L  C +
Sbjct: 66  ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAK 125

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
            G+L LG A+HS  +K S ER +  +N L+DMY KCG ++ A+ VF +M +++++SW S+
Sbjct: 126 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 185

Query: 177 IAASARNGNLELAFGFLHRLPNP----DTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           IA   R+G  + A   L ++       D ++   +++  A+ G +++   +   + + N 
Sbjct: 186 IAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 245

Query: 233 SS----WNSILTGYVNRNRVPEALHLFGEMQSKDV----------PMDEYTFSTMLSGIA 278
           +S     N+++  Y     +  A  +F  M  KD+            D  T + +L   A
Sbjct: 246 ASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACA 305

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            LSAL  G  IH  +++ G  +   VA+AL+D+Y KCG + +A  +F  +  K+LV+W  
Sbjct: 306 SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 365

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           MI GY  +G   + I  F +++    ++PD V+F+++L ACSH+ +  ++   +F  M  
Sbjct: 366 MIAGYGMHGYGNEAIATFNEMRDA-GIEPDEVSFISILYACSHSGL-LEQGWRFFYIMKN 423

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           D+ I+P +EH   M+ L+ + G + +A + I  L       +W ALL       D+++A 
Sbjct: 424 DFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAE 483

Query: 459 ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
             A  V +LE ++   YV+L N+Y     W+    MR  + ++GLRK  GCSWIE++
Sbjct: 484 KVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIK 540



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 194/428 (45%), Gaps = 50/428 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H   +KS F   +  S  L+  Y K   L  A ++F ++ + +VVSW S+I+GY + 
Sbjct: 133 KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 192

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G    A+ L  ++E+  +  D  + TS L AC + GSL  G  +H  I   ++   + + 
Sbjct: 193 GWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVC 252

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA------------------SARNG 184
           N L+DMY KCGS+E A  VF  M+ KDIISWN+++                    SA   
Sbjct: 253 NALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALER 312

Query: 185 NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
             E+    L    + D    N +++   + G +  A ++   +PS +  SW  ++ GY  
Sbjct: 313 GKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGM 372

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG------- 297
                EA+  F EM+   +  DE +F ++L   +           HS +++QG       
Sbjct: 373 HGYGNEAIATFNEMRDAGIEPDEVSFISILYACS-----------HSGLLEQGWRFFYIM 421

Query: 298 -----LDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTK 351
                ++  +   + ++D+ S+ G +  A     +L    +   W A++ G     D   
Sbjct: 422 KNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHD--- 478

Query: 352 VIELFEQL-KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
            IEL E++ + V +L+P++  +  +LA        +++V    E + K  G++      C
Sbjct: 479 -IELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKK-GLRKNPG--C 534

Query: 411 SMIRLMGQ 418
           S I + G+
Sbjct: 535 SWIEIKGR 542



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 117/238 (49%), Gaps = 12/238 (5%)

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISY 204
           L+  Y  CG +++   VF  M  K++  WN +++  A+ G+ + +            I  
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLF-------KIMV 54

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
            + I G       E A  +   +   +  SWNS+++GYV+       L ++ +M    + 
Sbjct: 55  EKGIEGKRS----ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGID 110

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
           +D  T  ++L G A    L+ G  +HS  IK   +  I  ++ LLDMYSKCG ++ A  +
Sbjct: 111 VDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRV 170

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           F  +  +N+V+W +MI GY R+G     I L +Q++    ++ D V   ++L AC+ +
Sbjct: 171 FEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEK-EGVKLDVVAITSILHACARS 227



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 35/223 (15%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  +L A + L      +++H YIL++G+ S+  V+ AL+  Y K   L  A  +
Sbjct: 292 PDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLL 351

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP   +VSW  +I+GY   G   +A+  F E+  + I  D  SF S L AC   G L
Sbjct: 352 FDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 411

Query: 121 QLGMAIHSKIVK--YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           + G      I+K  +++E  +    C++D+                              
Sbjct: 412 EQGWRFFY-IMKNDFNIEPKLEHYACMVDLL----------------------------- 441

Query: 179 ASARNGNLELAFGFLHRLP-NPDTISYNEVINGIAQFGDIEDA 220
             +R GNL  A+ F+  LP  PD   +  ++ G   + DIE A
Sbjct: 442 --SRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELA 482


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 153/512 (29%), Positives = 267/512 (52%), Gaps = 17/512 (3%)

Query: 19  DTY-----CQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWN 73
           DTY      + +H  I+      N  +   LM  Y  +  +A A K+F EIP+ +V+  N
Sbjct: 51  DTYPDLKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIIN 110

Query: 74  SLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY 133
            +I  YV +G YR+ + +F  +    +  D Y+F   L AC   G++ +G  IH    K 
Sbjct: 111 VMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKV 170

Query: 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL 193
            L   + + N L+ MYGKCG + +A  V  EM  +D++SWNS++A  A+N   + A    
Sbjct: 171 GLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVC 230

Query: 194 HRLP----NPDTISYNEVINGIAQFGDIEDAIMILS---SMPSPNSSSWNSILTGYVNRN 246
             +     + D  +   ++  ++     E+ + +      M   +  SWN ++ G   +N
Sbjct: 231 REMESVKISHDAGTMASLLPAVSN-TTTENVMYVKDMFFKMGKKSLVSWN-VMIGVYMKN 288

Query: 247 RVP-EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
            +P EA+ L+  M++     D  + +++L      SAL+ G  IH  + ++ L  ++++ 
Sbjct: 289 AMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE 348

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           +AL+DMY+KCG ++ A  +F ++  +++V+W AMI+ Y  +G     + LF +++    L
Sbjct: 349 NALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQD-SGL 407

Query: 366 QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425
            PDS+ F+  LAACSH  +  ++    F+ MT  Y I P +EH   M+ L+G+ G+V  A
Sbjct: 408 VPDSIAFVTTLAACSHAGL-LEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEA 466

Query: 426 QRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485
            + I+E+       VW ALL A    S+ D+  ++A ++ +L  +    YV+L N+Y   
Sbjct: 467 YKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKA 526

Query: 486 GNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           G W+  + +RN M+ +GL+K  G S +EV  +
Sbjct: 527 GRWEEVTNIRNIMKSKGLKKNPGASNVEVNRI 558



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 159/350 (45%), Gaps = 12/350 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A S  G     +++H    K G  S +FV   L+  Y K   L++A  +
Sbjct: 139 PDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLV 198

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
             E+ +  VVSWNSL++GY Q+ ++  AL +  E+E  +I  DA +  S L A     + 
Sbjct: 199 LDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTE 258

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM----IDKDIISWNSV 176
            + M +     K   ++ +V  N +I +Y K     +A+ ++  M     + D +S  SV
Sbjct: 259 NV-MYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSV 316

Query: 177 IAASARNGNLELA---FGFLHRLP-NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           + A      L L     G++ R    P+ +  N +I+  A+ G ++ A  +  +M S + 
Sbjct: 317 LPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDV 376

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
            SW ++++ Y    R  +A+ LF +MQ   +  D   F T L+  +    L  G      
Sbjct: 377 VSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKL 436

Query: 293 VIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMI 340
           +     +   +   + ++D+  + G+V+ A    + +    N   W A++
Sbjct: 437 MTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALL 486



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 130/278 (46%), Gaps = 26/278 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  +L A  D    +  +++H YI +   + N+ +  AL+  Y K   L  A  +
Sbjct: 308 PDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDV 367

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VVSW ++IS Y  SG+   A+ LF +++ S +  D+ +F + LAAC   G L
Sbjct: 368 FENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLL 427

Query: 121 QLG------MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISW 173
           + G      M  H KI    LE       C++D+ G+ G V++A     EM ++ +   W
Sbjct: 428 EEGRSCFKLMTDHYKITP-RLEH----LACMVDLLGRAGKVKEAYKFIQEMPMEPNERVW 482

Query: 174 NSVIAASARNGNLE---LAFGFLHRLPNPDTISYNEVINGI-AQFGDIEDAIMI------ 223
            +++ A   + N +   LA   L +L  P+   Y  +++ I A+ G  E+   I      
Sbjct: 483 GALLGACRVHSNTDIGLLAADKLFQLA-PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKS 541

Query: 224 --LSSMPSPNSSSWNSILTGYVNRNRV-PEALHLFGEM 258
             L   P  ++   N I+  ++  +R  P++  ++ E+
Sbjct: 542 KGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYREL 579


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 146/508 (28%), Positives = 265/508 (52%), Gaps = 33/508 (6%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           LL+A S +       ++H    K GF S+ FV T L+  Y     +A+A  MF ++    
Sbjct: 128 LLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRD 187

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           VV+W+ +I GY QSG +  AL LF E++   +  D    ++ L+ACG+ G+L  G  IH 
Sbjct: 188 VVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHD 247

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
            I++ ++     + + L+ MY  CGS++ A+ +F +M  K++      +A++A       
Sbjct: 248 FIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNL------VASTA------- 294

Query: 189 AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV 248
                             ++ G ++ G IE+A  + + M   +   W+++++GY   +  
Sbjct: 295 ------------------MVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSP 336

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
            EAL+LF EMQS  +  D+ T  ++++  A L AL     IH  V K G   ++ + +AL
Sbjct: 337 QEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNAL 396

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           ++MY+KCG +E A  +F  + RKN+++W  MI+ +A +GD    +  F Q++   +++P+
Sbjct: 397 IEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMED-ENIEPN 455

Query: 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM 428
            +TF+ VL ACSH  +  ++  + F SM  ++ I P   H   M+ L G+   +  A  +
Sbjct: 456 GITFVGVLYACSHAGL-VEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALEL 514

Query: 429 IRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW 488
           +  +      ++W +L++A     ++++   +A  +++L+ D D  +V L N+Y     W
Sbjct: 515 VEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRW 574

Query: 489 DVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +    +R  M+ +G+ KE GCS  E+ N
Sbjct: 575 EDVGQVRKLMKHKGISKERGCSRFELNN 602



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 97/174 (55%), Gaps = 3/174 (1%)

Query: 207 VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE-ALHLFGEMQSKDVPM 265
           VI+  A    ++ A+ + + +P P +   N  L   ++R+  PE  L ++  M+++ + +
Sbjct: 62  VISSCALSSSLDYALSVFNLIPKPETHLCNRFLRE-LSRSEEPEKTLLVYERMRTQGLAV 120

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           D ++F  +L  ++ + +L  G+ IH    K G D+   V + L+ MY+ CG++  A  MF
Sbjct: 121 DRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMF 180

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
             +  +++VTW+ MI GY ++G     + LFE++K   +++PD +    VL+AC
Sbjct: 181 DKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNY-NVEPDEMMLSTVLSAC 233



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 102/191 (53%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  +  ++ A + LG     + +H ++ K+GF   + ++ AL+  Y K  SL  A ++
Sbjct: 353 PDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRI 412

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P+ +V+SW  +IS +   G    AL  F ++E   I  +  +F   L AC   G +
Sbjct: 413 FDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLV 472

Query: 121 QLGMAI-HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G  I +S I ++++    V   C++D++G+   + +A+ +   M +  ++I W S++A
Sbjct: 473 EEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMA 532

Query: 179 ASARNGNLELA 189
           A   +G +EL 
Sbjct: 533 ACRVHGEIELG 543


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 161/550 (29%), Positives = 269/550 (48%), Gaps = 46/550 (8%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           LLRAS+         QLH  ++K GF S+  ++  L+  Y K   L  A ++F  +P+ +
Sbjct: 206 LLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERN 265

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           VVSW +L+ G++  G+ R+ L LF E+  S    + ++ ++ L ACG  G  + G+ IH 
Sbjct: 266 VVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQIHG 323

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE- 187
             V+   E   V+AN L+ MY K     DA  VF  +  +++ +WNS+I+  A  G    
Sbjct: 324 VCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRD 383

Query: 188 --LAFGFLHRLPN--PDTISYNEVINGIAQFGDIEDAIMILSSMP----SP--------- 230
             L F  + R  +  PD  ++  ++   +  G   +   + ++M     SP         
Sbjct: 384 SLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGA 443

Query: 231 ------------------------NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
                                   N+  W +++ G+    +V EA+ LF    S  V  D
Sbjct: 444 LLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRAD 503

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
            +  S++++  A  + +  G  +H    K      + VA++L+DMY KCG    A   FR
Sbjct: 504 GHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFR 563

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
            +  +N+V+W AMI G  ++G   + I+LFE+++    ++ D V +L +L+ACSH+ +  
Sbjct: 564 EMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQA-EGVEADEVAYLALLSACSHSGL-V 621

Query: 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
           D+   YF  + +D  ++P  EH   M+ L+G+ GE+  A+ +I  +       VW+ LLS
Sbjct: 622 DECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLS 681

Query: 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506
           A     D+ V R     ++ ++GD+   YVML N+    G W     +R  MR +GLRK+
Sbjct: 682 ACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQ 741

Query: 507 AGCSWIEVEN 516
            GCSW EV+ 
Sbjct: 742 GGCSWTEVDK 751



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 154/315 (48%), Gaps = 48/315 (15%)

Query: 87  KALNL--FVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           +A++L  F+ +ER  + AD       L A  +  SL+ G+ +H+ ++K       ++ N 
Sbjct: 187 RAIDLLGFLPMERRRMIADL------LRASARGSSLRGGVQLHAALMKLGFGSDTMLNNN 240

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------PN 198
           LIDMY KCG +  A  VF  M +++++SW +++     +G           +      PN
Sbjct: 241 LIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPN 300

Query: 199 PDTISYN-----------EVINGIAQFGDIE--------------------DAIMILSSM 227
             T+S               I+G+      E                    DA  +   +
Sbjct: 301 EFTLSATLKACGGGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVI 360

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK-DVPMDEYTFSTMLSGIAGLSALTWG 286
           PS N ++WNS+++GY +  +  ++L +F EMQ + D   DE+TF+++L   +GL A   G
Sbjct: 361 PSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREG 420

Query: 287 MLIHSCVIKQGLD--ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
             +H+ +  +G+   ++ ++A ALLD+Y KC ++ +A  +F  L R+N + W  +I G+A
Sbjct: 421 AQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHA 480

Query: 345 RNGDLTKVIELFEQL 359
           + G + + + LF + 
Sbjct: 481 QEGQVKEAMCLFRRF 495



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 6/225 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGF--LSNVFVSTALMGFYRKINSLADAH 58
           P+E+    LL+A S LG      Q+H  +   G    SN  ++ AL+  Y K + L  A 
Sbjct: 399 PDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAM 458

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           ++F  + + + + W ++I G+ Q G+ ++A+ LF     S + AD +  +S +A      
Sbjct: 459 QVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFA 518

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            ++ G  +H    K      V +AN L+DMY KCG   +A   F EM  ++++SW ++I 
Sbjct: 519 LVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMIN 578

Query: 179 ASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIED 219
              ++G+   A      +       D ++Y  +++  +  G +++
Sbjct: 579 GVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDE 623



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 92/178 (51%), Gaps = 2/178 (1%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
           +VL  ++   +D       +Q+HCY  K+    +V V+ +L+  Y K     +A + F E
Sbjct: 505 HVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFRE 564

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
           +P  +VVSW ++I+G  + G  R+A++LF E++   + AD  ++ + L+AC   G +   
Sbjct: 565 MPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDEC 624

Query: 124 MAIHSKIVKYSLERGVVIA-NCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
               S+I +    R       C++D+ G+ G + +A  +   M ++  +  W ++++A
Sbjct: 625 RRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSA 682


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 160/563 (28%), Positives = 277/563 (49%), Gaps = 82/563 (14%)

Query: 1   PNEYVLFHLLRASSDLG-WDTYCQQLHCYILKSG--FLSNVFVSTALMGFYRKINS---- 53
           P+ Y    +L A + +   + +CQQLHC ++KSG  F+++V    AL+  Y K  +    
Sbjct: 145 PDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVL--NALISSYVKCAASPSA 202

Query: 54  -----LADAHKMFVEIPQPSV-------------------------------VSWNSLIS 77
                +A+A K+F E+P                                   V+WN++IS
Sbjct: 203 QSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMIS 262

Query: 78  GYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY---- 133
           GY   G Y +A  +F ++  S+I  D ++FTS ++ C   G  +LG  +H+  +K     
Sbjct: 263 GYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANP 322

Query: 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL 193
           + +  + + N LI  Y KCG V+ A  +F +M                            
Sbjct: 323 APDVAMPVNNALITFYWKCGKVDIAQEIFNKM---------------------------- 354

Query: 194 HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
              P  D +S+N +++G      +++A    + MP  N  SW  +++G        EAL 
Sbjct: 355 ---PERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALK 411

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
            F  M+ +     +Y F+  +   + L +L  G  +H+ V++ G ++S+   +AL+ MY+
Sbjct: 412 FFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYA 471

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           +CG V+ A  +F ++   + ++WNAMI    ++G  T+ IELFE++     + PD ++FL
Sbjct: 472 RCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLK-EGILPDRISFL 530

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
            V++ACSH  +   +  +YF+SM   YG+ P  EH   +I L+ + G+   A+ ++  + 
Sbjct: 531 TVISACSHAGL-VKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMP 589

Query: 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
           F     +W ALL+      ++D+   +A  + +L+   D  YV+L N+Y   G W+  + 
Sbjct: 590 FEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAK 649

Query: 494 MRNFMRERGLRKEAGCSWIEVEN 516
           +R  MR+RG++KE GCSWIEVEN
Sbjct: 650 VRKLMRDRGVKKEPGCSWIEVEN 672



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 163/375 (43%), Gaps = 60/375 (16%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H +++ SGF     +   L+  Y K + L  A  +F EIPQP +V+  +LI+ Y  +
Sbjct: 33  RPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAA 92

Query: 83  GKYR---------------------------------KALNLFVELERSEIYADAYSFTS 109
           G  +                                  A+ LF +++R     D Y+FTS
Sbjct: 93  GDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTS 152

Query: 110 ALAACGQLGSLQLG-MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
            L A   +   +     +H  +VK        + N LI  Y KC +   A          
Sbjct: 153 VLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQ--------- 203

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP 228
                +S + A AR             +PN D +S+  +I G  +  D++ A   L+   
Sbjct: 204 -----SSSLMAEARK--------LFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTS 250

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
                +WN++++GY +R    EA  +F +M    + +DE+TF++++S  A       G  
Sbjct: 251 KKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKE 310

Query: 289 IHSCVIKQ----GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
           +H+  +K       D ++ V +AL+  Y KCG+V+IA  +F  +  ++LV+WN +++GY 
Sbjct: 311 MHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYV 370

Query: 345 RNGDLTKVIELFEQL 359
               + +    F ++
Sbjct: 371 NVRCMDEAKSFFNEM 385



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 120/305 (39%), Gaps = 71/305 (23%)

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           S  L   +H+ ++    +    I N LID+Y K   +  A  +F E+   DI++  ++IA
Sbjct: 28  SYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIA 87

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
           A +  G+L+L+       P                             +   +S  +N++
Sbjct: 88  AYSAAGDLKLSRKIFSDTP-----------------------------LGMRDSVFYNAM 118

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL-TWGMLIHSCVIKQG 297
           +T Y + +    A+ LF +MQ  +   D YTF+++L  +A ++        +H  V+K G
Sbjct: 119 ITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSG 178

Query: 298 LDASIVVASALLDMYSKC----------------------------------------GQ 317
                 V +AL+  Y KC                                          
Sbjct: 179 TGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNND 238

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           ++ A        +K  V WNAMI+GYA  G   +  E+F ++  +  +Q D  TF +V++
Sbjct: 239 LDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKM-IMSKIQLDEFTFTSVIS 297

Query: 378 ACSHT 382
            C++ 
Sbjct: 298 VCANA 302


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 162/554 (29%), Positives = 283/554 (51%), Gaps = 40/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y     L+A  D  +      +H  +LKS +  NVFV+ AL+  Y +   + +A  +
Sbjct: 280 PNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANI 339

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     +SWNS++SG+VQ+G Y +AL  + E+  +    D  +  S +AA  + G+ 
Sbjct: 340 FYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNT 399

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             GM IH+  +K  L+  + + N L+DMY K  S++    +F +M DKD++SW ++IA  
Sbjct: 400 LHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGH 459

Query: 181 ARNGN----LEL----------------------------------AFGFLHRLPNPDTI 202
           A+NG+    LEL                                     ++ R    D +
Sbjct: 460 AQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLV 519

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +++   + G+++ A  +   +   +  SW S+++ YV+     EAL LF  M+   
Sbjct: 520 LQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETG 579

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V  D  +  ++LS  A LSAL  G  IH  +I++G      +AS L+DMY++CG +E + 
Sbjct: 580 VEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSR 639

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           ++F  +  K+LV W +MI  Y  +G     I+LF +++    + PD + F+ VL ACSH+
Sbjct: 640 NVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMED-ESIAPDHIAFVAVLYACSHS 698

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  ++   + ESM  +Y ++P  EH   ++ L+G+   +  A + ++ +       VW 
Sbjct: 699 GL-MNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWC 757

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
           ALL A    S+ ++  I+A ++++++ ++   YV++ N+Y++   W     +R  M+  G
Sbjct: 758 ALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASG 817

Query: 503 LRKEAGCSWIEVEN 516
           L+K  GCSWIEV N
Sbjct: 818 LKKNPGCSWIEVGN 831



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 122/407 (29%), Positives = 214/407 (52%), Gaps = 42/407 (10%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           +L+A   L    Y  ++H   +K G++S VFV+ +++G Y K N L  A ++F  +P+  
Sbjct: 186 ILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKE 245

Query: 69  -VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
            VVSWNS+IS Y  +G+  +AL LF E++++ +  + Y+F +AL AC     ++ GM IH
Sbjct: 246 DVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIH 305

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
           + ++K S    V +AN LI MY + G + +A  +F  M D D ISWNS+++   +NG   
Sbjct: 306 ATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYH 365

Query: 188 LAFGFLHRLPN----PDTISY-----------------------------------NEVI 208
            A  F H + +    PD ++                                    N ++
Sbjct: 366 EALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLV 425

Query: 209 NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268
           +  A+F  ++    I   MP  +  SW +I+ G+        AL LF E+Q + + +D  
Sbjct: 426 DMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVM 485

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
             S++L   +GL  ++    IHS +I++GL + +V+ + ++D+Y +CG V+ A  MF  +
Sbjct: 486 MISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVLQNGIVDVYGECGNVDYAARMFELI 544

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
             K++V+W +MI+ Y  NG   + +ELF  +K    ++PDS++ +++
Sbjct: 545 EFKDVVSWTSMISCYVHNGLANEALELFHLMKET-GVEPDSISLVSI 590



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 135/466 (28%), Positives = 230/466 (49%), Gaps = 48/466 (10%)

Query: 23  QQLHCYILKSGFLSN-VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           QQ+H +++ S  L N VF+ST L+  Y K   L DA K+F  +P  ++ +WN++I  YV 
Sbjct: 98  QQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVT 157

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           +G+   +L L+ E+  S I  DA +F   L ACG L   + G  +H   +K      V +
Sbjct: 158 NGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFV 217

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIAASARNGN----LELAFGFLHRL 196
           AN ++ MY KC  +  A  +F  M +K D++SWNS+I+A + NG     L L FG + + 
Sbjct: 218 ANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRL-FGEMQKA 276

Query: 197 P-NPDTISY-----------------------------------NEVINGIAQFGDIEDA 220
              P+T ++                                   N +I   A+FG + +A
Sbjct: 277 SLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEA 336

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             I  +M   ++ SWNS+L+G+V      EAL  + EM+      D     ++++  A  
Sbjct: 337 ANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARS 396

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
                GM IH+  +K GLD+ + V ++L+DMY+K   ++  D +F  +  K++V+W  +I
Sbjct: 397 GNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTII 456

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
            G+A+NG  ++ +ELF +++ +  +  D +   ++L ACS   +    V E    + +  
Sbjct: 457 AGHAQNGSHSRALELFREVQ-LEGIDLDVMMISSILLACSGLKL-ISSVKEIHSYIIRK- 513

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
           G+   V     ++ + G+ G V  A RM   + F    V W +++S
Sbjct: 514 GLSDLVLQ-NGIVDVYGECGNVDYAARMFELIEFKDV-VSWTSMIS 557



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 161/339 (47%), Gaps = 43/339 (12%)

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK-IVKYSLERGVVIAN 143
           ++   +LF     S+   D  +++S L  CG   +L  G  +H+  I   +L   V ++ 
Sbjct: 60  FQSLTDLFANQSPSQFSLDE-AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLST 118

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN----GNLEL----------- 188
            L+ MYGKCG + DA  +F  M  K I +WN++I A   N    G+LEL           
Sbjct: 119 RLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPL 178

Query: 189 ----------AFGFL---------HRLPNPD-----TISYNEVINGIAQFGDIEDAIMIL 224
                     A G L         H L   +         N ++    +  D+  A  + 
Sbjct: 179 DACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLF 238

Query: 225 SSMPSPNS-SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
             MP      SWNS+++ Y +  +  EAL LFGEMQ   +  + YTF   L      S +
Sbjct: 239 DRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFI 298

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             GM IH+ V+K     ++ VA+AL+ MY++ G++  A ++F ++   + ++WN+M++G+
Sbjct: 299 KQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGF 358

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +NG   + ++ + +++     +PD V  ++++AA + +
Sbjct: 359 VQNGLYHEALQFYHEMRDAGQ-KPDLVAVISIIAASARS 396


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 161/550 (29%), Positives = 269/550 (48%), Gaps = 46/550 (8%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           LLRAS+         QLH  ++K GF S+  ++  L+  Y K   L  A ++F  +P+ +
Sbjct: 10  LLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERN 69

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           VVSW +L+ G++  G+ R+ L LF E+  S    + ++ ++ L ACG  G  + G+ IH 
Sbjct: 70  VVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQIHG 127

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE- 187
             V+   E   V+AN L+ MY K     DA  VF  +  +++ +WNS+I+  A  G    
Sbjct: 128 VCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRD 187

Query: 188 --LAFGFLHRLPN--PDTISYNEVINGIAQFGDIEDAIMILSSMP----SP--------- 230
             L F  + R  +  PD  ++  ++   +  G   +   + ++M     SP         
Sbjct: 188 SLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGA 247

Query: 231 ------------------------NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
                                   N+  W +++ G+    +V EA+ LF    S  V  D
Sbjct: 248 LLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRAD 307

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
            +  S++++  A  + +  G  +H    K      + VA++L+DMY KCG    A   FR
Sbjct: 308 GHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFR 367

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
            +  +N+V+W AMI G  ++G   + I+LFE+++    ++ D V +L +L+ACSH+ +  
Sbjct: 368 EMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQA-EGVEADEVAYLALLSACSHSGL-V 425

Query: 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
           D+   YF  + +D  ++P  EH   M+ L+G+ GE+  A+ +I  +       VW+ LLS
Sbjct: 426 DECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLS 485

Query: 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506
           A     D+ V R     ++ ++GD+   YVML N+    G W     +R  MR +GLRK+
Sbjct: 486 ACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQ 545

Query: 507 AGCSWIEVEN 516
            GCSW EV+ 
Sbjct: 546 GGCSWTEVDK 555



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 147/305 (48%), Gaps = 46/305 (15%)

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           +ER  + AD       L A  +  SL+ G+ +H+ ++K       ++ N LIDMY KCG 
Sbjct: 1   MERRRMIADL------LRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGK 54

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------PNPDTISYN--- 205
           +  A  VF  M +++++SW +++     +G           +      PN  T+S     
Sbjct: 55  LHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKA 114

Query: 206 --------EVINGIAQFGDIE--------------------DAIMILSSMPSPNSSSWNS 237
                     I+G+      E                    DA  +   +PS N ++WNS
Sbjct: 115 CGGGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNS 174

Query: 238 ILTGYVNRNRVPEALHLFGEMQSK-DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           +++GY +  +  ++L +F EMQ + D   DE+TF+++L   +GL A   G  +H+ +  +
Sbjct: 175 MISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVR 234

Query: 297 GLD--ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
           G+   ++ ++A ALLD+Y KC ++ +A  +F  L R+N + W  +I G+A+ G + + + 
Sbjct: 235 GVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMC 294

Query: 355 LFEQL 359
           LF + 
Sbjct: 295 LFRRF 299



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 6/225 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGF--LSNVFVSTALMGFYRKINSLADAH 58
           P+E+    LL+A S LG      Q+H  +   G    SN  ++ AL+  Y K + L  A 
Sbjct: 203 PDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAM 262

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           ++F  + + + + W ++I G+ Q G+ ++A+ LF     S + AD +  +S +A      
Sbjct: 263 QVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFA 322

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            ++ G  +H    K      V +AN L+DMY KCG   +A   F EM  ++++SW ++I 
Sbjct: 323 LVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMIN 382

Query: 179 ASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIED 219
              ++G+   A      +       D ++Y  +++  +  G +++
Sbjct: 383 GVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDE 427



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 92/178 (51%), Gaps = 2/178 (1%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
           +VL  ++   +D       +Q+HCY  K+    +V V+ +L+  Y K     +A + F E
Sbjct: 309 HVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFRE 368

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
           +P  +VVSW ++I+G  + G  R+A++LF E++   + AD  ++ + L+AC   G +   
Sbjct: 369 MPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDEC 428

Query: 124 MAIHSKIVKYSLERGVVIA-NCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
               S+I +    R       C++D+ G+ G + +A  +   M ++  +  W ++++A
Sbjct: 429 RRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSA 486


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 156/529 (29%), Positives = 259/529 (48%), Gaps = 64/529 (12%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV-- 80
           + LH   + SG   + FV+++L+  Y ++ +   A  +F  +P+ +VV W++LI+GY   
Sbjct: 37  RALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSAR 96

Query: 81  ---------------------------------QSGKYRKALNLFVELERSEIYADAYSF 107
                                            +SG+   A+   V +     + DA   
Sbjct: 97  GDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGV 156

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
           + AL+A G +  + +G  +H  +VK        +   LIDMYGKCG  ++ + VF E   
Sbjct: 157 SCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSH 216

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
            D+ S N+++A  +RN  +  A            + + E I    +              
Sbjct: 217 MDVASCNALVAGLSRNAQVSEAL-----------LLFREFICRGVEL------------- 252

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
              N  SW SI+   V   R  EA+ LF  MQS  V  +  T   +L   A ++AL  G 
Sbjct: 253 ---NVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGR 309

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
             H   +++G    + V SAL+DMY+KCG+   A ++F ++  +N+V+WNAMI GYA +G
Sbjct: 310 SAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHG 369

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407
           D    ++LF  ++  +  +PD VTF  VL ACS   +  ++   YF  M + +GI P +E
Sbjct: 370 DAANAVQLFCSMQKCKQ-KPDLVTFTCVLGACSQAGLT-EEGRRYFNEMQQGHGISPRME 427

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
           H   M+ L+G+ G++  A  +I E+ F     +W +LL +     ++ +A ++A ++ +L
Sbjct: 428 HYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQL 487

Query: 468 EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           E  +   YV+L N+Y S   WD  + +R+ M+  GL+KE GCSWIE++N
Sbjct: 488 EPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKN 536



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 145/320 (45%), Gaps = 41/320 (12%)

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
           +L+  L       D +   SAL +C    +  L  A+H+  V   L     +A+ L+  Y
Sbjct: 6   SLYHFLRHVSFPPDPHLLPSALKSCP---AQPLARALHAAAVVSGLAEDPFVASSLLHSY 62

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYN 205
            + G+   A  VF  M +K+++ W+++IA  +  G+ E A+G L ++ +    P+ I++N
Sbjct: 63  IRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWN 122

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
            +++G+ + G   DA+  L                                 M S+    
Sbjct: 123 GLVSGLNRSGRALDAVTALV-------------------------------RMHSEGFFP 151

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           D    S  LS +  +  ++ G  +H  V+K G      V +AL+DMY KCG+ +    +F
Sbjct: 152 DATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVF 211

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
                 ++ + NA++ G +RN  +++ + LF +    R ++ + V++ +++A C      
Sbjct: 212 HESSHMDVASCNALVAGLSRNAQVSEALLLFREF-ICRGVELNVVSWTSIVACCVQNGRD 270

Query: 386 FDKVSEYFESMTKDYGIKPT 405
            + V + F +M +  G++P 
Sbjct: 271 LEAV-DLFRTM-QSIGVEPN 288



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 20/200 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  +L A +++    + +  HC+ L+ GFL +V+V +AL+  Y K      A  +
Sbjct: 287 PNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTI 346

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG-- 118
           F  +P  +VVSWN++I GY   G    A+ LF  +++ +   D  +FT  L AC Q G  
Sbjct: 347 FDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLT 406

Query: 119 --------SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKD 169
                    +Q G  I  ++  Y+         C++ + G+ G +++A  +  EM  + D
Sbjct: 407 EEGRRYFNEMQQGHGISPRMEHYA---------CMVTLLGRSGKLDEAYDLINEMPFEPD 457

Query: 170 IISWNSVIAASARNGNLELA 189
              W S++ +    GN+ LA
Sbjct: 458 SCIWGSLLGSCRVYGNVLLA 477



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 137/346 (39%), Gaps = 62/346 (17%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV 69
           L A  D+   +  +Q+H Y++K+G   +  V TAL+  Y K     +  ++F E     V
Sbjct: 160 LSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDV 219

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG----------- 118
            S N+L++G  ++ +  +AL LF E     +  +  S+TS +A C Q G           
Sbjct: 220 ASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRT 279

Query: 119 ------------------------SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
                                   +L  G + H   ++      V + + L+DMY KCG 
Sbjct: 280 MQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGK 339

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVING 210
              A  +F  M  ++++SWN++I   A +G+   A      +      PD +++  V+  
Sbjct: 340 ARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGA 399

Query: 211 IAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
            +Q G  E+     + M      SP    +  ++T      ++ EA  L  EM     P 
Sbjct: 400 CSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEM-----PF 454

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           +               +  WG L+ SC +   +  + V A  L  +
Sbjct: 455 EP-------------DSCIWGSLLGSCRVYGNVLLAEVAAEKLFQL 487



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 16/230 (6%)

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
           L+  ++    P D +      S +    A      +H+  +  GL     VAS+LL  Y 
Sbjct: 7   LYHFLRHVSFPPDPHLLP---SALKSCPAQPLARALHAAAVVSGLAEDPFVASSLLHSYI 63

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           + G    A S+F  +  KN+V W+A+I GY+  GD      L EQ+++   ++P+ +T+ 
Sbjct: 64  RLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSA-GVEPNVITWN 122

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM---IR 430
            +++  + +    D V+      ++  G  P        +  +G   EV   +++   + 
Sbjct: 123 GLVSGLNRSGRALDAVTALVRMHSE--GFFPDATGVSCALSAVGDVKEVSVGKQVHGYVV 180

Query: 431 ELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
           + G      V  AL+   G C   D       E++++  +S ++ V  CN
Sbjct: 181 KAGCRLDACVVTALIDMYGKCGRAD-------EIVRVFHESSHMDVASCN 223


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 174/558 (31%), Positives = 273/558 (48%), Gaps = 74/558 (13%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H    + G     F + ALM  Y K+  L DA  + V      +V+WNS+IS + Q+
Sbjct: 136 KQIHGCCFRKGHW-RTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQN 194

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            ++ +AL     +    +  D  +F S L AC  L  L+ G  IH+    Y+L    VI 
Sbjct: 195 ERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHA----YALRTDDVIE 250

Query: 143 N-----CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
           N      L+DMY  CG VE    VF  ++D+ I  WN++IA  A++ + E A      + 
Sbjct: 251 NSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEME 310

Query: 198 -------NPDTIS---------------------------------YNEVINGIAQFGDI 217
                  N  T+S                                  N +I+  ++ GDI
Sbjct: 311 AAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDI 370

Query: 218 EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ--------------SKDV 263
           + +  I  SM   +  SWN+I+T YV   R  +AL L  EMQ               K V
Sbjct: 371 KTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQV 430

Query: 264 PM--DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           P   +  T  T+L G A LSAL  G  IH+  I+  L + + V SAL+DMY+KCG + +A
Sbjct: 431 PFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLA 490

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL----KTVRDLQPDSVTFLNVLA 377
             +F  +  +N++TWN +I  Y  +G   + +ELFE +        +++P  VTF+ + A
Sbjct: 491 RRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFA 550

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFG 435
           +CSH+ +  D+    F  M  ++GI+P  +H   ++ L+G+ G+V  A  ++  +  GF 
Sbjct: 551 SCSHSGM-VDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFD 609

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
             G  W +LL A     ++++  I+A  +++L+ D    YV+L N+Y+S G WD A  +R
Sbjct: 610 KVG-AWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLR 668

Query: 496 NFMRERGLRKEAGCSWIE 513
             M+  G++KE GCSWIE
Sbjct: 669 RRMKAMGVKKEPGCSWIE 686



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 103/441 (23%), Positives = 195/441 (44%), Gaps = 62/441 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGF--LSNVFVSTALMGFYRKINSLADAH 58
           P+ +    +L+A + +      +Q+H ++ K G+   S+V +   L+  Y K   L DA+
Sbjct: 8   PDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAY 67

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL- 117
           K+F  I +   VSWNS+IS   +  ++  A+  F  +        +++  S   AC  L 
Sbjct: 68  KVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLR 127

Query: 118 --GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175
               L LG  IH    +    R     N L+ MY K G ++DA  +     D+D+++WNS
Sbjct: 128 KRDGLWLGKQIHGCCFRKGHWR-TFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNS 186

Query: 176 VIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQF----------------- 214
           +I++ ++N     A  FL  +      PD +++  V+   +                   
Sbjct: 187 MISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTD 246

Query: 215 -------------------GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
                              G +E   ++  S+       WN+++ GY       +AL LF
Sbjct: 247 DVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLF 306

Query: 256 GEMQ-SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
            EM+ +  +  +  T S+++        ++    IH  VIK+GL+ +  + +AL+DMYS+
Sbjct: 307 IEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSR 366

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD---------- 364
            G ++ +  +F S+  +++V+WN +IT Y   G  +  + L  +++ + +          
Sbjct: 367 MGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYND 426

Query: 365 -----LQPDSVTFLNVLAACS 380
                 +P+S+T + VL  C+
Sbjct: 427 EKQVPFKPNSITLMTVLPGCA 447



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 101/198 (51%), Gaps = 10/198 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  +L   + L      +++H Y +++   S V V +AL+  Y K   L  A ++
Sbjct: 434 PNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRV 493

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-----ERSEIYADAYSFTSALAACG 115
           F ++P  +V++WN +I  Y   GK +++L LF ++     +  E+     +F +  A+C 
Sbjct: 494 FDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCS 553

Query: 116 QLGSLQLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM---IDKDII 171
             G +  G+++  K+  ++ +E       C++D+ G+ G VE+A G+   M    DK + 
Sbjct: 554 HSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDK-VG 612

Query: 172 SWNSVIAASARNGNLELA 189
           +W+S++ A     N+E+ 
Sbjct: 613 AWSSLLGACRIYHNIEIG 630


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 170/583 (29%), Positives = 288/583 (49%), Gaps = 78/583 (13%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           L++  + +   +  +QLH   +++  LS+   S  ++  Y  +  L +A  +F  +  P 
Sbjct: 11  LIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASI-VISIYTNLKLLHEALLLFKTLKSPP 69

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           V++W S+I  +     + KAL  FVE+  S    D   F S L +C  +  L+ G ++H 
Sbjct: 70  VLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHG 129

Query: 129 KIVKYSLERGVVIANCLIDMYGK---------CGSVEDAIG------------------- 160
            IV+  ++  +   N L++MY K          G+V D +                    
Sbjct: 130 FIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMP 189

Query: 161 --------VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------PNPDTIS--- 203
                   VF  M  KD++S+N++IA  A++G  E A   +  +      P+  T+S   
Sbjct: 190 FGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVL 249

Query: 204 -----YNEVING-------------------------IAQFGDIEDAIMILSSMPSPNSS 233
                Y +VI G                          A+   IED+  + S +   +  
Sbjct: 250 PIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGI 309

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           SWNS++ GYV   R  EAL LF +M +  V      FS+++   A L+ L  G  +H  V
Sbjct: 310 SWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYV 369

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
           ++ G  ++I +ASAL+DMYSKCG ++ A  +F  +   + V+W A+I G+A +G   + +
Sbjct: 370 LRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAV 429

Query: 354 ELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMI 413
            LFE++K  + ++P+ V F+ VL ACSH  +  D+   YF SMTK YG+   +EH  ++ 
Sbjct: 430 SLFEEMKR-QGVKPNQVAFVAVLTACSHVGL-VDEAWGYFNSMTKVYGLNQELEHYAAVA 487

Query: 414 RLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY 473
            L+G+ G++  A   I ++     G VW  LLS+     +L++A   A ++  ++ ++  
Sbjct: 488 DLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMG 547

Query: 474 VYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            YV++CN+Y S+G W   + +R  MR++GLRK+  CSWIE++N
Sbjct: 548 AYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKN 590



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 159/318 (50%), Gaps = 17/318 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + L  +L   S+       +++H Y+++ G  S+V++ ++L+  Y K   + D+ ++
Sbjct: 240 PDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERV 299

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     +SWNSL++GYVQ+G+Y +AL LF ++  +++   A +F+S + AC  L +L
Sbjct: 300 FSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATL 359

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  +H  +++      + IA+ L+DMY KCG+++ A  +F  M   D +SW ++I   
Sbjct: 360 HLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGH 419

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
           A +G+   A      +      P+ +++  V+   +  G +++A    +SM        N
Sbjct: 420 ALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSM--TKVYGLN 477

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
             L  Y     V + L   G+++      + Y F + +      +   W  L+ SC + +
Sbjct: 478 QELEHYAA---VADLLGRAGKLE------EAYNFISKM--CVEPTGSVWSTLLSSCSVHK 526

Query: 297 GLDASIVVASALLDMYSK 314
            L+ +  VA  +  + S+
Sbjct: 527 NLELAEKVAEKIFTVDSE 544


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 146/477 (30%), Positives = 252/477 (52%), Gaps = 20/477 (4%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A ++F ++    V+SWNS+ISGYV +G   + L ++ ++    I  D  +  S L  C  
Sbjct: 204 AFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
            G+L LG A+HS  +K S ER +  +N L+DMY KCG ++ A+ VF +M +++++SW S+
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 177 IAASARNGNLELAFGFLHRLPNP----DTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           IA   R+G  + A   L ++       D ++   +++  A+ G +++   +   + + N 
Sbjct: 324 IAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 383

Query: 233 SS----WNSILTGYVNRNRVPEALHLFGEMQSKDV----------PMDEYTFSTMLSGIA 278
            S     N+++  Y     +  A  +F  M  KD+            D  T + +L   A
Sbjct: 384 ESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACA 443

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            LSAL  G  IH  +++ G  +   VA+AL+D+Y KCG + +A  +F  +  K+LV+W  
Sbjct: 444 SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 503

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           MI GY  +G   + I  F +++    ++PD V+F+++L ACSH+ +  ++   +F  M  
Sbjct: 504 MIAGYGMHGYGNEAIATFNEMRDA-GIEPDEVSFISILYACSHSGL-LEQGWRFFYIMKN 561

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           D+ I+P +EH   M+ L+ + G + +A   I  L       +W ALL       D+++A 
Sbjct: 562 DFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAE 621

Query: 459 ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
             A  V +LE ++   YV+L N+Y     W+    +R  + ++GLRK  GCSWIE++
Sbjct: 622 KVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIK 678



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 195/420 (46%), Gaps = 34/420 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H   +KS F   +  S  L+  Y K   L  A ++F ++ + +VVSW S+I+GY + 
Sbjct: 271 KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+   A+ L  ++E+  +  D  + TS L AC + GSL  G  +H  I   ++E  + + 
Sbjct: 331 GRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVC 390

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA------------------SARNG 184
           N L+DMY KCGS+E A  VF  M+ KDIISWN++I                    SA   
Sbjct: 391 NALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALER 450

Query: 185 NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
             E+    L    + D    N +++   + G +  A ++   +PS +  SW  ++ GY  
Sbjct: 451 GKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGM 510

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQ--GLDA 300
                EA+  F EM+   +  DE +F ++L     +GL    W       ++K    ++ 
Sbjct: 511 HGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFY---IMKNDFNIEP 567

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            +   + ++D+ S+ G +  A     +L    +   W A++ G     D    IEL E++
Sbjct: 568 KLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHD----IELAEKV 623

Query: 360 -KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
            + V +L+P++  +  +LA        +++V    E + K  G++      CS I + G+
Sbjct: 624 AERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQ-GLRKNPG--CSWIEIKGK 680



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 14/314 (4%)

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           V  +N+ I  + Q G    A+ L    ++SE+    YS  S L  C  L S   G  +HS
Sbjct: 66  VTDYNAKILHFCQLGDLENAMELICMCKKSELETKTYS--SVLQLCAGLKSFTDGKKVHS 123

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
            I   S+     +   L+  Y  CG +++   VF  M  K++  WN +++  A+ G+ + 
Sbjct: 124 IIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKE 183

Query: 189 AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV 248
           +            I   + I G       E A  +   +   +  SWNS+++GYV+    
Sbjct: 184 SICLF-------KIMVEKGIEGKRP----ESAFELFDKLCDRDVISWNSMISGYVSNGLT 232

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
              L ++ +M    + +D  T  ++L G A    L+ G  +HS  IK   +  I  ++ L
Sbjct: 233 ERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTL 292

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           LDMYSKCG ++ A  +F  +  +N+V+W +MI GY R+G     I+L +Q++    ++ D
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEK-EGVKLD 351

Query: 369 SVTFLNVLAACSHT 382
            V   ++L AC+ +
Sbjct: 352 VVAITSILHACARS 365



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 35/223 (15%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  +L A + L      +++H YIL++G+ S+  V+ AL+  Y K   L  A  +
Sbjct: 430 PDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLL 489

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP   +VSW  +I+GY   G   +A+  F E+  + I  D  SF S L AC   G L
Sbjct: 490 FDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 549

Query: 121 QLGMAIHSKIVK--YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           + G      I+K  +++E  +    C++D+                              
Sbjct: 550 EQGWRFFY-IMKNDFNIEPKLEHYACMVDLL----------------------------- 579

Query: 179 ASARNGNLELAFGFLHRLP-NPDTISYNEVINGIAQFGDIEDA 220
             +R GNL  A+ F+  LP  PD   +  ++ G   + DIE A
Sbjct: 580 --SRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELA 620


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 161/550 (29%), Positives = 269/550 (48%), Gaps = 46/550 (8%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           LLRAS+         QLH  ++K GF S+  ++  L+  Y K   L  A ++F  +P+ +
Sbjct: 10  LLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERN 69

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           VVSW +L+ G++  G+ R+ L LF E+  S    + ++ ++ L ACG  G  + G+ IH 
Sbjct: 70  VVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQIHG 127

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE- 187
             V+   E   V+AN L+ MY K     DA  VF  +  +++ +WNS+I+  A  G    
Sbjct: 128 VCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRD 187

Query: 188 --LAFGFLHRLPN--PDTISYNEVINGIAQFGDIEDAIMILSSMP----SP--------- 230
             L F  + R  +  PD  ++  ++   +  G   +   + ++M     SP         
Sbjct: 188 SLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGA 247

Query: 231 ------------------------NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
                                   N+  W +++ G+    +V EA+ LF    S  V  D
Sbjct: 248 LLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRAD 307

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
            +  S++++  A  + +  G  +H    K      + VA++L+DMY KCG    A   FR
Sbjct: 308 GHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFR 367

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
            +  +N+V+W AMI G  ++G   + I+LFE+++    ++ D V +L +L+ACSH+ +  
Sbjct: 368 EMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQE-EGVEADEVAYLALLSACSHSGL-V 425

Query: 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
           D+   YF  + +D  ++P  EH   M+ L+G+ GE+  A+ +I  +       VW+ LLS
Sbjct: 426 DECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLS 485

Query: 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506
           A     D+ V R     ++ ++GD+   YVML N+    G W     +R  MR +GLRK+
Sbjct: 486 ACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQ 545

Query: 507 AGCSWIEVEN 516
            GCSW EV+ 
Sbjct: 546 GGCSWTEVDK 555



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 147/305 (48%), Gaps = 46/305 (15%)

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           +ER  + AD       L A  +  SL+ G+ +H+ ++K       ++ N LIDMY KCG 
Sbjct: 1   MERRRMIADL------LRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGK 54

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------PNPDTISYN--- 205
           +  A  VF  M +++++SW +++     +G           +      PN  T+S     
Sbjct: 55  LHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKA 114

Query: 206 --------EVINGIAQFGDIE--------------------DAIMILSSMPSPNSSSWNS 237
                     I+G+      E                    DA  +   +PS N ++WNS
Sbjct: 115 CGGGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNS 174

Query: 238 ILTGYVNRNRVPEALHLFGEMQSK-DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           +++GY +  +  ++L +F EMQ + D   DE+TF+++L   +GL A   G  +H+ +  +
Sbjct: 175 MISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVR 234

Query: 297 GLD--ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
           G+   ++ ++A ALLD+Y KC ++ +A  +F  L R+N + W  +I G+A+ G + + + 
Sbjct: 235 GVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMC 294

Query: 355 LFEQL 359
           LF + 
Sbjct: 295 LFRRF 299



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 6/225 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGF--LSNVFVSTALMGFYRKINSLADAH 58
           P+E+    LL+A S LG      Q+H  +   G    SN  ++ AL+  Y K + L  A 
Sbjct: 203 PDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAM 262

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           ++F  + + + + W ++I G+ Q G+ ++A+ LF     S + AD +  +S +A      
Sbjct: 263 QVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFA 322

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            ++ G  +H    K      V +AN L+DMY KCG   +A   F EM  ++++SW ++I 
Sbjct: 323 LVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMIN 382

Query: 179 ASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIED 219
              ++G+   A      +       D ++Y  +++  +  G +++
Sbjct: 383 GVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACSHSGLVDE 427



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 92/178 (51%), Gaps = 2/178 (1%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
           +VL  ++   +D       +Q+HCY  K+    +V V+ +L+  Y K     +A + F E
Sbjct: 309 HVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFRE 368

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
           +P  +VVSW ++I+G  + G  R+A++LF E++   + AD  ++ + L+AC   G +   
Sbjct: 369 MPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACSHSGLVDEC 428

Query: 124 MAIHSKIVKYSLERGVVIA-NCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
               S+I +    R       C++D+ G+ G + +A  +   M ++  +  W ++++A
Sbjct: 429 RRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSA 486


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 139/480 (28%), Positives = 252/480 (52%), Gaps = 42/480 (8%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           N     A++  Y K     +A ++F  +P   +VSWNS+++GY ++G+ R  L  F E+ 
Sbjct: 26  NPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMA 85

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
                                                  ER VV  N ++D + + G + 
Sbjct: 86  ---------------------------------------ERDVVSWNLMVDGFVEVGDLN 106

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
            +   F ++ + + +SW +++   AR G +  A     ++P  + +++N +I    Q   
Sbjct: 107 SSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCH 166

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           +++AI +   MP  NS SW +++ GYV   ++ EA  L  +M  ++ P D+ TF+  LS 
Sbjct: 167 VDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNKP-DQSTFACGLSS 225

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            A L+AL  G  +H  V+K G    + V++AL+ MY+KCG +  A+ +F+ +   ++V+W
Sbjct: 226 CAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSW 285

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           N++I  YA NG+  + ++LF +++ V  + PD VTF+ +L+ACSH  +  D+  + F+ M
Sbjct: 286 NSLIAAYALNGNGREALKLFHKME-VEGVAPDEVTFVGILSACSHVGL-IDQGLKLFKCM 343

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
            + Y I+P  EH   M+ L+G+ G +  A +++R +   +   +W ALL A     +L++
Sbjct: 344 VQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLEL 403

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           A+ +A ++++ E      YV+L N+    G WD  + +R  M+E+G  K+ G SWIE++N
Sbjct: 404 AKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQN 463



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 138/285 (48%), Gaps = 28/285 (9%)

Query: 35  LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE 94
           + NV    A++  Y +   + +A  +F+E+P+ + +SW ++I+GYV+ GK  +A  L  +
Sbjct: 148 IRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQ 207

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           +       D  +F   L++C  L +LQ+G  +H  ++K      + ++N LI MY KCGS
Sbjct: 208 MPYRN-KPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGS 266

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVING 210
           +  A  +F ++   D++SWNS+IAA A NGN   A    H++      PD +++  +++ 
Sbjct: 267 ISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSA 326

Query: 211 IAQFGDIEDAIMILSSMPS-----PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
            +  G I+  + +   M       P +  +  ++       R+ EA  L   M+      
Sbjct: 327 CSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMK------ 380

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLD 310
                   ++  AG+    WG L+ +C I   L+ +   A  LL+
Sbjct: 381 --------INANAGI----WGALLGACRIHGNLELAKFAAEKLLE 413



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 100/169 (59%), Gaps = 2/169 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH  ++KSG+ +++FVS AL+  Y K  S++ A  +F +I    VVSWNSLI+ Y  +
Sbjct: 236 KQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALN 295

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK-YSLERGVVI 141
           G  R+AL LF ++E   +  D  +F   L+AC  +G +  G+ +   +V+ Y++E     
Sbjct: 296 GNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEH 355

Query: 142 ANCLIDMYGKCGSVEDAIG-VFGEMIDKDIISWNSVIAASARNGNLELA 189
             C++D+ G+ G +E+A   V G  I+ +   W +++ A   +GNLELA
Sbjct: 356 YACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELA 404


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 153/484 (31%), Positives = 256/484 (52%), Gaps = 14/484 (2%)

Query: 40  VSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE 99
           ++  LM  Y      + A  +F    + +VV +N +I  YV +  Y +AL++F  +    
Sbjct: 73  LAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCA 132

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159
              D Y+F   L AC  L +L++G+ +H  IVK  L+  + I N L+ MYGKCG + +A 
Sbjct: 133 FNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREAR 192

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNE------VINGIAQ 213
            V  +M  +D++SWNS++A  A++G  + A      +   D+++ N        ++ +  
Sbjct: 193 KVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEM---DSLNLNHDAGTMASLSPVVC 249

Query: 214 FGDIEDAIMI---LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
           +  +E+   I      M   N  SWN ++  YVN +   EA+ LF +M+   +  D  T 
Sbjct: 250 YTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTI 309

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
           +++L     LSAL  G  +H  + K  L  ++++ +ALLDMY+KCG +E A  +F  +  
Sbjct: 310 ASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRL 369

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
           +++V+W +M++ Y R+G     + LF ++       PDS+ F++VL+ACSHT +  D+  
Sbjct: 370 RDVVSWTSMMSAYGRSGQGYDAVALFAKMLD-SGQNPDSIAFVSVLSACSHTGL-LDQGR 427

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450
            YF  MT+ YGI P +EH   M+ L G+ GEV  A   I+++       VW ALLSA   
Sbjct: 428 HYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRV 487

Query: 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCS 510
            S +D+  ++A  + +L       YV+L N+Y   G W     +R  M++ G++K  G S
Sbjct: 488 HSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGIS 547

Query: 511 WIEV 514
            +E+
Sbjct: 548 NVEL 551



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 170/355 (47%), Gaps = 18/355 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A S L       Q+H  I+K G  +N+F+  AL+  Y K   L +A K+
Sbjct: 135 PDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKV 194

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
             ++P   VVSWNS+++GY QSG++  AL +  E++   +  DA +  S L+      SL
Sbjct: 195 LDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMAS-LSPVVCYTSL 253

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM----IDKDIISWNSV 176
           +    IH+   + + ++ ++  N +I +Y       +A+ +F +M    +  D ++  S+
Sbjct: 254 ENVQYIHNMFERMT-KKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASL 312

Query: 177 IAASARNGNLELAF--GFLHRLP-----NPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           + A    G+L   F    LH+        P+ +  N +++  A+ G +E+A  +   M  
Sbjct: 313 LPAC---GDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRL 369

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            +  SW S+++ Y    +  +A+ LF +M       D   F ++LS  +    L  G   
Sbjct: 370 RDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHY 429

Query: 290 HSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITG 342
              + +Q G+   I   + ++D++ + G+VE A S  + +    N   W A+++ 
Sbjct: 430 FRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSA 484



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 130/272 (47%), Gaps = 14/272 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL A  DL      ++LH YI K     N+ +  AL+  Y K   L +A  +
Sbjct: 304 PDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDV 363

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++    VVSW S++S Y +SG+   A+ LF ++  S    D+ +F S L+AC   G L
Sbjct: 364 FDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLL 423

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G      +  +Y +   +    C++D++G+ G VE+A     +M ++ +   W ++++
Sbjct: 424 DQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLS 483

Query: 179 ASARNGNLEL---AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM-------- 227
           A   +  +++   A   L +L    +  Y  + N  A+ G  +D + +  +M        
Sbjct: 484 ACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKV 543

Query: 228 PSPNSSSWNSILTGYVNRNRV-PEALHLFGEM 258
           P  ++   N  +  ++  ++  P+A +++GE+
Sbjct: 544 PGISNVELNGQVHTFLAGDQYHPQAKNIYGEL 575



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 14/123 (11%)

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHS-CVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +V +D+Y       GI  L+ L      HS  VI + L     +A  L+  YS  G+  +
Sbjct: 42  EVILDQY------PGIKTLNKL------HSKIVINEHLRIDPTLAIKLMRAYSAQGETSV 89

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F     KN+V +N MI  Y  N    + + +F+ + +     PD  TF  VL ACS
Sbjct: 90  ARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCA-FNPDHYTFPCVLKACS 148

Query: 381 HTD 383
             D
Sbjct: 149 GLD 151


>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/480 (30%), Positives = 253/480 (52%), Gaps = 10/480 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV   TAL+  Y +   + +A  +F  +P+ +VVSWN+++  Y  SG+   A  LF  + 
Sbjct: 97  NVVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMP 156

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
                 DA S+   LAA  + G++     +  ++     ER V+    ++    + GSV 
Sbjct: 157 ----VRDAGSWNILLAALVRSGNIDKARKLFDRMP----ERNVMAWTTMVAGIARSGSVN 208

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           +A  +F  M +++++SWN++I+  ARN  ++ A     ++P  D  S+N +I G  Q  +
Sbjct: 209 EARALFDGMPERNVVSWNAMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKN 268

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           +E A  +   MP  N  +W +++ GY+   +   AL LF  M    +  ++ TF   +  
Sbjct: 269 LERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDA 328

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            + L+ L+ G  +H  + K        + S L+++Y+KCG++ +A  +F     K++++W
Sbjct: 329 CSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISW 388

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           N MI  YA +G   + I L+E+++     +P+ VT++ +L+ACSH+ +  D+    FE M
Sbjct: 389 NGMIAAYAHHGVGLEAIHLYEKMQE-NGYKPNDVTYVGLLSACSHSGL-VDEGLRIFEYM 446

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
            KD  I    EH   +I L  + G +  A+R+I  L       VW ALL    +  +  +
Sbjct: 447 VKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESI 506

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
             ++A  +++ E ++   Y +LCN+Y S G W  A+ +R+ M +RGL+K+ GCSWIEV N
Sbjct: 507 GDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVAN 566



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 123/262 (46%), Gaps = 43/262 (16%)

Query: 152 CGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT----ISYNEV 207
            G V DA  +F    D+D++SW +++AA A  G L  A     R   PD     +++  +
Sbjct: 48  AGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFDR---PDARRNVVTWTAL 104

Query: 208 INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
           ++G A+ G +++A  +   MP  N  SWN++L  Y +  RV +A  LF  M  +D     
Sbjct: 105 LSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRD----- 159

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS-----------IVVASALLDMYSKCG 316
                         A +W +L+ + V    +D +           ++  + ++   ++ G
Sbjct: 160 --------------AGSWNILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSG 205

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            V  A ++F  +  +N+V+WNAMI+GYARN  + +  +LF ++ T RD     +   N++
Sbjct: 206 SVNEARALFDGMPERNVVSWNAMISGYARNHMIDEAHDLFMKMPT-RD-----IASWNIM 259

Query: 377 AACSHTDIPFDKVSEYFESMTK 398
                 +   ++  E F+ M +
Sbjct: 260 ITGFIQNKNLERAQELFDKMPR 281



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 13/236 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+      + A S+L   +  QQ+H  I K+ F  + F+ + LM  Y K   +  A K+
Sbjct: 317 PNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKV 376

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +  V+SWN +I+ Y   G   +A++L+ +++ +    +  ++   L+AC   G +
Sbjct: 377 FNLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLV 436

Query: 121 QLGMAIHSKIVKYSLERGVVIAN----CLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNS 175
             G+ I   +VK   +R + + +    CLID+  + G + DA  +   + ++     WN+
Sbjct: 437 DEGLRIFEYMVK---DRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNA 493

Query: 176 VIAASARNGNLEL----AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           ++     +GN  +    A   L   PN +  +Y  + N  A  G  ++A  I S M
Sbjct: 494 LLGGCNSHGNESIGDLAARNLLEAEPN-NAGTYTLLCNIYASAGKWKEAAKIRSEM 548


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 154/512 (30%), Positives = 265/512 (51%), Gaps = 17/512 (3%)

Query: 19  DTY-----CQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWN 73
           DTY      + +H  I+      N  +   LM  Y  +  +A A K+F EIP+ +V+  N
Sbjct: 50  DTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIIN 109

Query: 74  SLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY 133
            +I  YV +G Y + + +F  +    +  D Y+F   L AC   G++ +G  IH    K 
Sbjct: 110 VMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKV 169

Query: 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL 193
            L   + + N L+ MYGKCG + +A  V  EM  +D++SWNS++   A+N   + A    
Sbjct: 170 GLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVC 229

Query: 194 HRLP----NPDTISYNEVINGIAQFGDIEDAIMILS---SMPSPNSSSWNSILTGYVNRN 246
             +     + D  +   ++  ++     E+ + +      M   +  SWN ++ G   +N
Sbjct: 230 REMESVKISHDAGTMASLLPAVSN-TTTENVMYVKDMFFKMGKKSLVSWN-VMIGVYMKN 287

Query: 247 RVP-EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
            +P EA+ L+  M++     D  + +++L      SAL+ G  IH  + ++ L  ++++ 
Sbjct: 288 AMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE 347

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           +AL+DMY+KCG +E A  +F ++  +++V+W AMI+ Y  +G     + LF +L+    L
Sbjct: 348 NALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQD-SGL 406

Query: 366 QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425
            PDS+ F+  LAACSH  +  ++    F+ MT  Y I P +EH   M+ L+G+ G+V  A
Sbjct: 407 VPDSIAFVTTLAACSHAGL-LEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEA 465

Query: 426 QRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485
            R I+++       VW ALL A    SD D+  ++A ++ +L  +    YV+L N+Y   
Sbjct: 466 YRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKA 525

Query: 486 GNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           G W+  + +RN M+ +GL+K  G S +EV  +
Sbjct: 526 GRWEEVTNIRNIMKSKGLKKNPGASNVEVNRI 557



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 158/350 (45%), Gaps = 12/350 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A S  G     +++H    K G  S +FV   L+  Y K   L++A  +
Sbjct: 138 PDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLV 197

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
             E+ +  VVSWNSL+ GY Q+ ++  AL +  E+E  +I  DA +  S L A     + 
Sbjct: 198 LDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTE 257

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM----IDKDIISWNSV 176
            + M +     K   ++ +V  N +I +Y K     +A+ ++  M     + D +S  SV
Sbjct: 258 NV-MYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSV 315

Query: 177 IAASARNGNLELA---FGFLHRLP-NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           + A      L L     G++ R    P+ +  N +I+  A+ G +E A  +  +M S + 
Sbjct: 316 LPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDV 375

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
            SW ++++ Y    R  +A+ LF ++Q   +  D   F T L+  +    L  G      
Sbjct: 376 VSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKL 435

Query: 293 VIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSLC-RKNLVTWNAMI 340
           +     +   +   + ++D+  + G+V+ A    + +    N   W A++
Sbjct: 436 MTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALL 485



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 91/186 (48%), Gaps = 12/186 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  +L A  D    +  +++H YI +   + N+ +  AL+  Y K   L  A  +
Sbjct: 307 PDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDV 366

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VVSW ++IS Y  SG+   A+ LF +L+ S +  D+ +F + LAAC   G L
Sbjct: 367 FENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLL 426

Query: 121 QLG------MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISW 173
           + G      M  H KI    LE       C++D+ G+ G V++A     +M ++ +   W
Sbjct: 427 EEGRSCFKLMTDHYKITP-RLEH----LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVW 481

Query: 174 NSVIAA 179
            +++ A
Sbjct: 482 GALLGA 487


>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 159/513 (30%), Positives = 277/513 (53%), Gaps = 47/513 (9%)

Query: 41  STALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF-------- 92
           +T L G Y K   +  A ++F E+P+ +VVSWN+++SGY+ +G   KA+  F        
Sbjct: 156 NTMLSG-YAKSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDS 214

Query: 93  ----------------VELERSEI----------YADAYSFTSALAACGQLGSLQLGMAI 126
                           VE ER  +            DAY+  + +A  GQ G       +
Sbjct: 215 ASLRALISGLIQNDKLVEAERILLQYGGNVGKGDLVDAYN--TLIAGYGQKGMAYEARKL 272

Query: 127 HSKI-----VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
             +I       YS  R V+  N +I  Y + G +  A  +F +M+++D  SWN++I+   
Sbjct: 273 FDRIPLCCDCGYS-RRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYV 331

Query: 182 RNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTG 241
           +  +++ A     R+P PDT+S+N +I+G ++ G ++ A  +   +P  +  SWNS+++G
Sbjct: 332 QILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISG 391

Query: 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
           Y        A+++F +MQ +    D +T S++LS  AGL  L  G  IH  V K    A 
Sbjct: 392 YEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTK-AFIAD 450

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           + + ++L+ MYS+CG +  A  +F  +  ++++++WNAMI GYA +G  T+ ++LF+ +K
Sbjct: 451 LPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMK 510

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
              ++QP  +TF++VL AC+H  +  ++    F SM   +GIKP VEH  +++ ++G+ G
Sbjct: 511 QC-NVQPSYITFISVLNACAHAGL-IEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHG 568

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
           ++  A  +I  +       VW ALL A    +++++AR +A  ++KL+ +S   YV+L N
Sbjct: 569 QLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQPESSAPYVLLHN 628

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
           +Y   G WD A+ MR  M +  ++K+AG S ++
Sbjct: 629 MYADVGRWDDAAEMRTMMEKNNVQKDAGYSRVD 661



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 173/359 (48%), Gaps = 32/359 (8%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ-SGKY-RKALNLFVE 94
           N      ++  Y K   +  A ++F E+P   +VSWN ++SGY+   GK+  +A N+F +
Sbjct: 87  NTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQ 146

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           +  +    D  S+ + L+   + G +     + +++     ER VV  N ++  Y   G 
Sbjct: 147 MPET----DCVSWNTMLSGYAKSGMMDKAEELFNEMP----ERNVVSWNAMVSGYLMNGH 198

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNL----ELAFGFLHRLPNPDTI-SYNEVIN 209
           VE AI  F  M  +D  S  ++I+   +N  L     +   +   +   D + +YN +I 
Sbjct: 199 VEKAIEFFKLMPKRDSASLRALISGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIA 258

Query: 210 GIAQFGDIEDAIMILSSMP--------SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           G  Q G   +A  +   +P          N  SWNS++  YV    +  A  LF +M   
Sbjct: 259 GYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKM--- 315

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  D ++++TM+SG   +      M   S +  +  +   +  + ++  +S+ G +++A
Sbjct: 316 -VERDTFSWNTMISGYVQI----LDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLA 370

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             +F+ +  K+LV+WN+MI+GY +N D    + +F Q++ +   +PD  T  ++L+AC+
Sbjct: 371 HDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQ-LEGKKPDRHTLSSILSACA 428



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 146/330 (44%), Gaps = 51/330 (15%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           +   + +A ++F      + ++WN +I+ YV+  +  KA  LF E+              
Sbjct: 69  RTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMP------------- 115

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS--VEDAIGVFGEMID 167
                                      R +V  N ++  Y  CG   VE A  +F +M +
Sbjct: 116 --------------------------NRDIVSWNLMLSGYISCGGKFVERARNMFDQMPE 149

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
            D +SWN++++  A++G ++ A    + +P  + +S+N +++G    G +E AI     M
Sbjct: 150 TDCVSWNTMLSGYAKSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLM 209

Query: 228 PSPNSSSWNSILTGYVNRNRVPEA---LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
           P  +S+S  ++++G +  +++ EA   L  +G    K   +D Y       G  G++   
Sbjct: 210 PKRDSASLRALISGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEA 269

Query: 285 WGML--IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
             +   I  C        +++  ++++  Y + G +  A  +F  +  ++  +WN MI+G
Sbjct: 270 RKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISG 329

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
           Y +  D+ +   LF ++      +PD++++
Sbjct: 330 YVQILDMKEASNLFSRMP-----EPDTLSW 354


>gi|297605437|ref|NP_001057211.2| Os06g0228900 [Oryza sativa Japonica Group]
 gi|255676854|dbj|BAF19125.2| Os06g0228900 [Oryza sativa Japonica Group]
          Length = 695

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 152/526 (28%), Positives = 278/526 (52%), Gaps = 54/526 (10%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL- 95
           +V     L+G Y +   + +A ++F E+PQ +  SWN++++G+  +G+  KAL++F  + 
Sbjct: 95  DVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMP 154

Query: 96  ---------------------ERSEIYADAYSFT----------SALAACGQLGS----- 119
                                E  E+     S T          + + A GQ G      
Sbjct: 155 AKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAK 214

Query: 120 -----LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN 174
                +  G   H+ + +   ER VV  N ++  Y K G V  A  +F EM DKD++SWN
Sbjct: 215 RLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWN 274

Query: 175 SVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSS 234
           ++I+   +  +++ +      +P+PDT+S+N +I G  Q G+ E A      MP   + S
Sbjct: 275 TMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTIS 334

Query: 235 WNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           WN++++GY        ++ LF +M +  ++P D +TFS++L+  A +  L  G  IH  +
Sbjct: 335 WNTMISGYEKNGNYISSVKLFSKMLEVGEIP-DRHTFSSVLAACASIPMLGLGAQIHQ-L 392

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKV 352
           +++       +++AL+ MYS+CG +  A+++F+ +  +K+LV+WNA+I  Y  +G  TK 
Sbjct: 393 VEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKA 452

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE---YFESMTKDYGIKPTVEHC 409
           ++LF++++  + + P  +TF+++L+AC +  +    VSE    F++M  +YGI   +EH 
Sbjct: 453 LQLFKEMRRAK-VMPTHITFVSLLSACVNAGL----VSEGRMVFDTMVHEYGIVARIEHY 507

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469
            +++ L+G+ G++  A  +I  +       VW A L A  A  +  +A+++A E+  +  
Sbjct: 508 AALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAFLGACTAKKNEPLAQMAAKELSTINP 567

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           DS   YV++ NL+   G W  A+V+R  M  +G+ K+ G SWI++E
Sbjct: 568 DSSAPYVLIHNLHAHEGKWGSAAVVREEMERQGIYKQPGYSWIDLE 613



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 104/439 (23%), Positives = 181/439 (41%), Gaps = 67/439 (15%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A ++F  +P  SVV+WNSL++G  +    R A   F  +       DA S+ + LAA   
Sbjct: 19  ARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMP----VRDAVSWNTLLAAYSA 74

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
                  +A   ++     +R VV  N L+  Y + G +++A  +F EM  ++  SWN++
Sbjct: 75  SPHPD-HLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTM 133

Query: 177 IAASARNGNLELAFGFLHRLPNPDTIS--------------------------------- 203
           +      G +  A      +P  D+ S                                 
Sbjct: 134 VTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKA 193

Query: 204 ---YNEVINGIAQFGDIEDAIMILSSMPS--------------PNSSSWNSILTGYVNRN 246
              YN +I    Q G   DA  +   +P                N  SWNS++  Y+   
Sbjct: 194 VDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAG 253

Query: 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
            V  A  LF EM  KD+     +++TM+SG    S     M     +  +  D   V  +
Sbjct: 254 DVCSARALFNEMPDKDL----VSWNTMISGYTQAS----DMKESEKLFWEMPDPDTVSWN 305

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
            ++  + + G+ E A   F  +  +  ++WN MI+GY +NG+    ++LF ++  V ++ 
Sbjct: 306 LIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEI- 364

Query: 367 PDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426
           PD  TF +VLAAC+   IP   +      + +   + P      ++I +  + G +  A+
Sbjct: 365 PDRHTFSSVLAACA--SIPMLGLGAQIHQLVEKSFV-PDTAISNALITMYSRCGALNDAE 421

Query: 427 RMIRELGFGSYGVVWRALL 445
            + +++      V W AL+
Sbjct: 422 AIFKQMHTKKDLVSWNALI 440



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 153/317 (48%), Gaps = 21/317 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q  H  + + GF  NV    ++M  Y K   +  A  +F E+P   +VSWN++ISGY Q+
Sbjct: 224 QYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQA 283

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK-IVKYSLERGVVI 141
              +++  LF E+       D  S+   +      G +Q G A H++       ERG + 
Sbjct: 284 SDMKESEKLFWEMPDP----DTVSWNLIIQ-----GFMQKGEAEHARGFFDRMPERGTIS 334

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMID----KDIISWNSVIAASARNGNLELAFGFLHRLP 197
            N +I  Y K G+   ++ +F +M++     D  +++SV+AA A    L L    +H+L 
Sbjct: 335 WNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLG-AQIHQLV 393

Query: 198 N----PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS-SSWNSILTGYVNRNRVPEAL 252
                PDT   N +I   ++ G + DA  I   M +     SWN+++  Y +  R  +AL
Sbjct: 394 EKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKAL 453

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDM 311
            LF EM+   V     TF ++LS       ++ G ++   ++ + G+ A I   +AL+++
Sbjct: 454 QLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNL 513

Query: 312 YSKCGQVEIADSMFRSL 328
             + GQ++ A  +  S+
Sbjct: 514 IGRHGQLDDALEVINSM 530



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 124/302 (41%), Gaps = 89/302 (29%)

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIA-------------------------------- 178
           + G    A  +F  +  + +++WNS++A                                
Sbjct: 12  RAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVRDAVSWNTLLAA 71

Query: 179 --ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
             AS    +L  A      +P  D +++N ++   A+ G +++A  +   MP  N++SWN
Sbjct: 72  YSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWN 131

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI------------------- 277
           +++TG+    +V +AL +F  M +K    D  + STM+SG                    
Sbjct: 132 TMVTGFFAAGQVVKALDVFDAMPAK----DSASLSTMVSGFTKNGMLHEAEELLTKRLSV 187

Query: 278 -------------------AG--------LSALTWGMLIHSCVIKQGLDASIVVASALLD 310
                              AG           +  G   H+ + ++G + ++V  ++++ 
Sbjct: 188 TDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMI 247

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370
            Y K G V  A ++F  +  K+LV+WN MI+GY +  D+ +  +LF ++       PD+V
Sbjct: 248 CYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMP-----DPDTV 302

Query: 371 TF 372
           ++
Sbjct: 303 SW 304



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 110/270 (40%), Gaps = 54/270 (20%)

Query: 174 NSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS 233
           N  +AA  R G    A      LP    +++N ++ G+A+  D   A     +MP  ++ 
Sbjct: 4   NRSLAALLRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVRDAV 63

Query: 234 SWNSILTGY---VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
           SWN++L  Y    + + +  A  LF EM  +DV                   +TW     
Sbjct: 64  SWNTLLAAYSASPHPDHLAAARRLFDEMPQRDV-------------------VTW----- 99

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
                          + LL  Y++ G ++ A  +F  + ++N  +WN M+TG+   G + 
Sbjct: 100 ---------------NTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVV 144

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK---PTVE 407
           K +++F+ +        DS +   +++  +   +    + E  E +TK   +      V+
Sbjct: 145 KALDVFDAMPA-----KDSASLSTMVSGFTKNGM----LHEAEELLTKRLSVTDMDKAVD 195

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
              ++I   GQ G    A+R+   +  G Y
Sbjct: 196 AYNTLIVAYGQAGRFSDAKRLFDMIPKGQY 225


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 143/482 (29%), Positives = 253/482 (52%), Gaps = 36/482 (7%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           N++    ++  Y K+  +  A K+F ++P+  VVSWN+++  + Q G + +AL  + E  
Sbjct: 125 NLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFR 184

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           +  I  + +SF   L  C +L  + L   +H +I+       VV+++ ++D Y KCG + 
Sbjct: 185 QLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMG 244

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           DA  +F EM  +D+++W ++++                               G A++GD
Sbjct: 245 DARKLFDEMSARDVLAWTTMVS-------------------------------GYAKWGD 273

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           ++ A  +   MP  N  SW ++++GY       +AL LF +M    V  D++TFS+ L  
Sbjct: 274 MKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCA 333

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK-NLVT 335
            A +++L  G  IH+ +++     + +V SAL+DMYSKCG + I   +F  +  K ++V 
Sbjct: 334 CASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVL 393

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACSHTDIPFDKVSEYFE 394
           WN +I+  A++G   + I++ + +  VR   +PD +TF+ +L ACSH+ +   +   +FE
Sbjct: 394 WNTIISALAQHGCGEEAIQMLDDM--VRSGAKPDKITFVVILNACSHSGL-VQQGLNFFE 450

Query: 395 SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDL 454
           SM+ DYGI P+ EH   +I L+G+ G        + ++ +     VW ALL        +
Sbjct: 451 SMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHI 510

Query: 455 DVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           ++ R +A  +I+LE  S   YV+L ++Y   G W+    +R  M ER ++KE   SW+E+
Sbjct: 511 ELGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEI 570

Query: 515 EN 516
           EN
Sbjct: 571 EN 572



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 174/399 (43%), Gaps = 66/399 (16%)

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER-GV 139
           +  K  +A++    L R  +  D+ +  S L  C    +L+ G  +H  +    L+R G 
Sbjct: 36  KKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGT 95

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            ++N LI+MY KCG   +A  VF +M  +++ SWN++++                     
Sbjct: 96  FLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLS--------------------- 134

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                     G A+ G I+ A  +   MP  +  SWN+++  +       EAL  + E +
Sbjct: 135 ----------GYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFR 184

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC---- 315
              +  + ++F+ +L+    L  +     +H  ++  G  +++V++S++LD Y KC    
Sbjct: 185 QLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMG 244

Query: 316 ---------------------------GQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
                                      G ++ A+ +F  +  KN V+W A+I+GYARNG 
Sbjct: 245 DARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGM 304

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
             K +ELF ++  +  ++PD  TF + L AC+   I   K  +   +       +P    
Sbjct: 305 GHKALELFTKM-MLFHVRPDQFTFSSCLCACA--SIASLKHGKQIHAYLLRINFQPNTIV 361

Query: 409 CCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
             ++I +  + G +   +++   +G     V+W  ++SA
Sbjct: 362 VSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISA 400



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 9/202 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++     L A + +    + +Q+H Y+L+  F  N  V +AL+  Y K  SL    K+
Sbjct: 322 PDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKV 381

Query: 61  FVEIPQP-SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F  +     VV WN++IS   Q G   +A+ +  ++ RS    D  +F   L AC   G 
Sbjct: 382 FDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGL 441

Query: 120 LQLGMAIHSKIVKYSLERGVVIAN----CLIDMYGKCGSVEDAIGVFGEMIDK-DIISWN 174
           +Q G+     +   S + G+V +     CLID+ G+ G  E+ +    +M  K D   WN
Sbjct: 442 VQQGLNFFESM---SCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWN 498

Query: 175 SVIAASARNGNLELAFGFLHRL 196
           +++     +G++EL      RL
Sbjct: 499 ALLGVCRIHGHIELGRKAAERL 520


>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
 gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
          Length = 596

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 157/558 (28%), Positives = 269/558 (48%), Gaps = 70/558 (12%)

Query: 23  QQLHCYILKSGF--LSNVFVSTALMGFYRKINSLAD-AHKMFVEIPQPSVVSWNSLISGY 79
           +Q H  I+ +GF  L  + V   L+        ++   H +   +P P   SW   I  +
Sbjct: 40  KQTHACIIINGFNNLEPLLVRQILLSARNNPRRISQYVHSILYHLPHPDSFSWGWAIRYF 99

Query: 80  VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
            Q G++++AL L+V+++R  +    ++ +SAL A  +      GM+IH++  KY     V
Sbjct: 100 SQQGQFKEALYLYVQMQRQGLCPSTFAVSSALRAYARTTYKMGGMSIHAESYKYGFSNCV 159

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            +   L+D+Y K G +  A  VF E+ +K+++SWNS+++   ++GNL  A     ++   
Sbjct: 160 YVQTALVDLYSKLGDMNTAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFDQISKK 219

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           D IS+N +I+G A+ GD++ A ++   MP  N SSWN++++GYVN   +  A   F  M 
Sbjct: 220 DVISWNSMISGYAKIGDMDRACVLFQQMPEKNYSSWNALISGYVNCGDIKSAWRFFDAMP 279

Query: 260 SKD---------------------------VPMDEYTFSTMLSGIA-------------- 278
            ++                              D  TF+ M+S  A              
Sbjct: 280 ERNSVSWITMIAGYSKCGDVDSASKLFDQIAKKDLLTFNAMISCFAQNSQPRKALWLFSE 339

Query: 279 -----------------------GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
                                   L  L +   I S V   G +    + +ALLD+Y+KC
Sbjct: 340 MLKAYANIQPDQMTLASVVSACSQLGDLRFASWIESYVNDLGTEIDDQLVTALLDLYAKC 399

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G V+ A  +F  L +K++V ++AMI+G   NG +   I+LF+ +   + + P+  TF  +
Sbjct: 400 GSVDKAYELFHGLNKKDVVAYSAMISGCGINGKVADAIKLFDMMVDAQ-IHPNLATFTGL 458

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L AC+H  +   +   +F SM KD+G+ P+ +H   M+ L+G+ G +  A  +I+ +   
Sbjct: 459 LTACNHAGL-VKEGYRFFSSM-KDHGLVPSTDHYAIMVDLLGRAGRLQDAYELIKSMPMQ 516

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
            +  VW ALL A    +++++  I+A     LE ++   Y +L N+Y+S G WD    +R
Sbjct: 517 PHSGVWGALLLACNVHNNVELGEIAAQHCFNLETNATAYYSLLANIYSSAGRWDDVGRLR 576

Query: 496 NFMRERGLRKEAGCSWIE 513
              +E+ L K +GCSW E
Sbjct: 577 KLWKEKKLAKLSGCSWTE 594



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 93/189 (49%), Gaps = 1/189 (0%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  L  ++ A S LG   +   +  Y+   G   +  + TAL+  Y K  S+  A+++
Sbjct: 349 PDQMTLASVVSACSQLGDLRFASWIESYVNDLGTEIDDQLVTALLDLYAKCGSVDKAYEL 408

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  VV+++++ISG   +GK   A+ LF  +  ++I+ +  +FT  L AC   G +
Sbjct: 409 FHGLNKKDVVAYSAMISGCGINGKVADAIKLFDMMVDAQIHPNLATFTGLLTACNHAGLV 468

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
           + G    S +  + L         ++D+ G+ G ++DA  +   M +      W +++ A
Sbjct: 469 KEGYRFFSSMKDHGLVPSTDHYAIMVDLLGRAGRLQDAYELIKSMPMQPHSGVWGALLLA 528

Query: 180 SARNGNLEL 188
              + N+EL
Sbjct: 529 CNVHNNVEL 537


>gi|51535392|dbj|BAD37262.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|51535558|dbj|BAD37476.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 908

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 154/526 (29%), Positives = 277/526 (52%), Gaps = 54/526 (10%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL- 95
           +V     L+G Y +   + +A ++F E+PQ +  SWN++++G+  +G+  KAL++F  + 
Sbjct: 131 DVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMP 190

Query: 96  ---------------------ERSEIYADAYSFT----------SALAACGQLGS----- 119
                                E  E+     S T          + + A GQ G      
Sbjct: 191 AKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAK 250

Query: 120 -----LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN 174
                +  G   H+ + +   ER VV  N ++  Y K G V  A  +F EM DKD++SWN
Sbjct: 251 RLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWN 310

Query: 175 SVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSS 234
           ++I+   +  +++ +      +P+PDT+S+N +I G  Q G+ E A      MP   + S
Sbjct: 311 TMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTIS 370

Query: 235 WNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           WN++++GY        ++ LF +M +  ++P D +TFS++L+  A +  L  G  IH  V
Sbjct: 371 WNTMISGYEKNGNYISSVKLFSKMLEVGEIP-DRHTFSSVLAACASIPMLGLGAQIHQLV 429

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKV 352
            K  +     +++AL+ MYS+CG +  A+++F+ +  +K+LV+WNA+I  Y  +G  TK 
Sbjct: 430 EKSFV-PDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKA 488

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE---YFESMTKDYGIKPTVEHC 409
           ++LF++++  + + P  +TF+++L+AC +  +    VSE    F++M  +YGI   +EH 
Sbjct: 489 LQLFKEMRRAK-VMPTHITFVSLLSACVNAGL----VSEGRMVFDTMVHEYGIVARIEHY 543

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469
            +++ L+G+ G++  A  +I  +       VW A L A  A  +  +A+++A E+  +  
Sbjct: 544 AALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAFLGACTAKKNEPLAQMAAKELSTINP 603

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           DS   YV++ NL+   G W  A+V+R  M  +G+ K+ G SWI++E
Sbjct: 604 DSSAPYVLIHNLHAHEGKWGSAAVVREEMERQGIYKQPGYSWIDLE 649



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 104/439 (23%), Positives = 181/439 (41%), Gaps = 67/439 (15%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A ++F  +P  SVV+WNSL++G  +    R A   F  +       DA S+ + LAA   
Sbjct: 55  ARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMP----VRDAVSWNTLLAAYSA 110

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
                  +A   ++     +R VV  N L+  Y + G +++A  +F EM  ++  SWN++
Sbjct: 111 SPHPD-HLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTM 169

Query: 177 IAASARNGNLELAFGFLHRLPNPDTIS--------------------------------- 203
           +      G +  A      +P  D+ S                                 
Sbjct: 170 VTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKA 229

Query: 204 ---YNEVINGIAQFGDIEDAIMILSSMPS--------------PNSSSWNSILTGYVNRN 246
              YN +I    Q G   DA  +   +P                N  SWNS++  Y+   
Sbjct: 230 VDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAG 289

Query: 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
            V  A  LF EM  KD+     +++TM+SG    S     M     +  +  D   V  +
Sbjct: 290 DVCSARALFNEMPDKDL----VSWNTMISGYTQAS----DMKESEKLFWEMPDPDTVSWN 341

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
            ++  + + G+ E A   F  +  +  ++WN MI+GY +NG+    ++LF ++  V ++ 
Sbjct: 342 LIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEI- 400

Query: 367 PDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426
           PD  TF +VLAAC+   IP   +      + +   + P      ++I +  + G +  A+
Sbjct: 401 PDRHTFSSVLAACA--SIPMLGLGAQIHQLVEKSFV-PDTAISNALITMYSRCGALNDAE 457

Query: 427 RMIRELGFGSYGVVWRALL 445
            + +++      V W AL+
Sbjct: 458 AIFKQMHTKKDLVSWNALI 476



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 153/317 (48%), Gaps = 21/317 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q  H  + + GF  NV    ++M  Y K   +  A  +F E+P   +VSWN++ISGY Q+
Sbjct: 260 QYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQA 319

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK-IVKYSLERGVVI 141
              +++  LF E+       D  S+   +      G +Q G A H++       ERG + 
Sbjct: 320 SDMKESEKLFWEMPDP----DTVSWNLIIQ-----GFMQKGEAEHARGFFDRMPERGTIS 370

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMID----KDIISWNSVIAASARNGNLELAFGFLHRLP 197
            N +I  Y K G+   ++ +F +M++     D  +++SV+AA A    L L    +H+L 
Sbjct: 371 WNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLG-AQIHQLV 429

Query: 198 N----PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS-SSWNSILTGYVNRNRVPEAL 252
                PDT   N +I   ++ G + DA  I   M +     SWN+++  Y +  R  +AL
Sbjct: 430 EKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKAL 489

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDM 311
            LF EM+   V     TF ++LS       ++ G ++   ++ + G+ A I   +AL+++
Sbjct: 490 QLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNL 549

Query: 312 YSKCGQVEIADSMFRSL 328
             + GQ++ A  +  S+
Sbjct: 550 IGRHGQLDDALEVINSM 566



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 113/277 (40%), Gaps = 54/277 (19%)

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
           D  ++  N  +AA  R G    A      LP    +++N ++ G+A+  D   A     +
Sbjct: 33  DDLVMRHNRSLAALLRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDA 92

Query: 227 MPSPNSSSWNSILTGY---VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
           MP  ++ SWN++L  Y    + + +  A  LF EM  +DV                   +
Sbjct: 93  MPVRDAVSWNTLLAAYSASPHPDHLAAARRLFDEMPQRDV-------------------V 133

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
           TW                    + LL  Y++ G ++ A  +F  + ++N  +WN M+TG+
Sbjct: 134 TW--------------------NTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGF 173

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI- 402
              G + K +++F+ +        DS +   +++  +   +    + E  E +TK   + 
Sbjct: 174 FAAGQVVKALDVFDAMPA-----KDSASLSTMVSGFTKNGM----LHEAEELLTKRLSVT 224

Query: 403 --KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
                V+   ++I   GQ G    A+R+   +  G Y
Sbjct: 225 DMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQY 261


>gi|347954476|gb|AEP33738.1| chlororespiratory reduction 21, partial [Matthiola incana]
          Length = 784

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 152/525 (28%), Positives = 280/525 (53%), Gaps = 13/525 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +   L AS+++G     +Q H   + +G   +  + T+++ FY  +  +  A  +
Sbjct: 249 PTRVTVSTCLSASANMGGIEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEYAEMI 308

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +   V+WN LISGYVQ G   +A+++   + R  +  D  + ++ ++A     +L
Sbjct: 309 FDGMIEKXXVTWNLLISGYVQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSAATSTQNL 368

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  I    +++ LE  +V+A+  +DMY KCGS+ +A  VF   + KD+I WN++++A 
Sbjct: 369 KLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAY 428

Query: 181 ARNG----NLELAFGF-LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PN 231
           A +G     L L +   L  +P P+ I++N +I  + + G + +A  +   M S    PN
Sbjct: 429 ADSGLSGEALRLFYEMQLESVP-PNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPN 487

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SW +++ G V      EA+    +MQ   +  + +T +  LS  A L++L +G  IH 
Sbjct: 488 LISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACANLASLHFGRSIHG 547

Query: 292 CVIK-QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
            +I+ Q    S  + ++L+DMY+KCG +  A+ +F S     L  +NAMI+ YA  G + 
Sbjct: 548 YIIRNQQYSFSAWIETSLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYGKVR 607

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + I L+  L+    ++PD++T  ++L+AC++     ++  E F  M   +G+KP +EH  
Sbjct: 608 EAITLYRSLED-GGVKPDNITITSLLSACNYGR-DVNQAIEVFSDMVSKHGMKPCLEHYG 665

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            M+ L+   GE  +A R++ E+ +     + ++L  +       ++    +  +++ E D
Sbjct: 666 LMVDLLASAGETDKALRLMEEMPYKPDARMVQSLFESCSKQHKTELVEYLSKHLLESEPD 725

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           +   YVM+ N Y   G+WD  + MR  M+ +GL+K+ GCSWI+++
Sbjct: 726 NSGNYVMISNAYAVEGSWDEVAKMREMMKVKGLKKKPGCSWIQIK 770



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 137/515 (26%), Positives = 239/515 (46%), Gaps = 49/515 (9%)

Query: 23  QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           QQ+H  ILK G  +  N ++ T L+ FY K ++L  A  +F ++   +V SW ++I    
Sbjct: 67  QQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKC 126

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + G    AL  FVE+  + I+ D +   +   ACG L   + G  +H  + K  L   V 
Sbjct: 127 RIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVF 186

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-- 198
           +A+ L DMYGKCG ++DA  VF  + D++ ++WN+++    +NG  E A   L  +    
Sbjct: 187 VASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEG 246

Query: 199 --PDTISYNEVINGIAQFGDIED-----------------------------------AI 221
             P  ++ +  ++  A  G IE+                                   A 
Sbjct: 247 IEPTRVTVSTCLSASANMGGIEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEYAE 306

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           MI   M      +WN +++GYV +  V EA+H+   M+ +++  D  T ST++S      
Sbjct: 307 MIFDGMIEKXXVTWNLLISGYVQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSAATSTQ 366

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  I    I+ GL++ IV+AS  +DMY+KCG +  A  +F S  +K+L+ WN +++
Sbjct: 367 NLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLS 426

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            YA +G   + + LF +++ +  + P+ +T+ N++      +   ++  E F  M +  G
Sbjct: 427 AYADSGLSGEALRLFYEMQ-LESVPPNVITW-NLIILSLLRNGQVNEAKEMFLQM-QSSG 483

Query: 402 IKPTVEHCCSMIRLMGQKG---EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           I P +    +M+  + Q G   E     R ++E G           LSA    + L   R
Sbjct: 484 IFPNLISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACANLASLHFGR 543

Query: 459 ISAAEVIKLE--GDSDYVYVMLCNLYTSHGNWDVA 491
                +I+ +    S ++   L ++Y   G+ + A
Sbjct: 544 SIHGYIIRNQQYSFSAWIETSLVDMYAKCGDINKA 578



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 112/480 (23%), Positives = 207/480 (43%), Gaps = 87/480 (18%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +V+ ++ +A   L W  + + +H Y+ K+G    VFV+++L   Y K   L DA K+
Sbjct: 148 PDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKV 207

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP  + V+WN+L+ GYVQ+G   +A+ L  E+ +  I     + ++ L+A   +G +
Sbjct: 208 FDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGI 267

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G   H+  +   L    ++   +++ Y   G +E A  +F  MI+K  ++WN +I+  
Sbjct: 268 EEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEYAEMIFDGMIEKXXVTWNLLISGY 327

Query: 181 ARNGNLELAFGF--LHRLPN-------------------------------------PDT 201
            + G +E A     L R  N                                      D 
Sbjct: 328 VQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDI 387

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           +  +  ++  A+ G I +A  +  S    +   WN++L+ Y +     EAL LF EMQ +
Sbjct: 388 VLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLE 447

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            VP +                +TW ++I S +                    + GQV  A
Sbjct: 448 SVPPN---------------VITWNLIILSLL--------------------RNGQVNEA 472

Query: 322 DSMFRSLCRK----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
             MF  +       NL++W  M+ G  +NG   + I    +++    L+P++ T    L+
Sbjct: 473 KEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQE-SGLRPNAFTITVALS 531

Query: 378 ACSH-TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
           AC++   + F +    +    + Y     +E   S++ +  + G++ +A+R+     FGS
Sbjct: 532 ACANLASLHFGRSIHGYIIRNQQYSFSAWIE--TSLVDMYAKCGDINKAERV-----FGS 584



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 11/156 (7%)

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
           P S+S+   ++       + EAL L  EM  +++ +    +  +L G      L  G  I
Sbjct: 10  PLSTSYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQI 69

Query: 290 HSCVIKQG--LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR-- 345
           H+ ++K+G     +  + + L+  Y+KC  +EIA  +F  L  +N+ +W A+I    R  
Sbjct: 70  HAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIG 129

Query: 346 --NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
              G L   +E+ E       + PD+    NV  AC
Sbjct: 130 LGEGALMGFVEMLEN-----GIFPDNFVVPNVCKAC 160


>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 158/552 (28%), Positives = 275/552 (49%), Gaps = 45/552 (8%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP--- 65
           LL+A   L      +Q+H Y+++ G +SN  +  +++  Y + N L  A   F       
Sbjct: 238 LLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHN 297

Query: 66  --------------------------------QPSVVSWNSLISGYVQSGKYRKALNLFV 93
                                           +P +++WNSL+SG++  G Y   L  F 
Sbjct: 298 SASWNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFR 357

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
            L+ +    D+ S TSAL A   LG   LG  IH  I++  LE  V +   L+D Y K  
Sbjct: 358 SLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKND 417

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVIN 209
            ++ A  VF    +K+I +WNS+I+     G  + A   L+++      PD +++N +++
Sbjct: 418 CLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVS 477

Query: 210 GIAQFGDIEDAIMILSSMPS----PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
           G +  G  E+A+ +++ + S    PN  SW ++++G        +AL  F +MQ ++V  
Sbjct: 478 GYSMSGRSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKP 537

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           +  T  T+L   AG S L  G  IH   ++ G    I +A+AL+DMY K G++++A  +F
Sbjct: 538 NSTTICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEVF 597

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
           R++  K L  WN M+ GYA  G   +V  LF++++    ++PD++TF  +L+ C ++ + 
Sbjct: 598 RNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKT-GVRPDAITFTALLSGCKNSGLV 656

Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
            D   +YF+SM  DY I PT+EH   M+ L+G+ G +  A   I  +   +   +W A+L
Sbjct: 657 MDGW-KYFDSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKADASIWGAVL 715

Query: 446 SASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505
           +A     D+ +A I+A  +++LE  +   Y ++ N+Y++   W     ++  M   G++ 
Sbjct: 716 AACRLHKDIKIAEIAARNLLRLEPYNSANYALMMNIYSTFDRWGDVERLKESMTALGVKI 775

Query: 506 EAGCSWIEVENV 517
               SWI+V+  
Sbjct: 776 PNVWSWIQVKQT 787



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 167/357 (46%), Gaps = 28/357 (7%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           ++H  ++K GF  +V +S AL+  Y K   +  A+++F E P      WN+++   ++S 
Sbjct: 152 EVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSE 211

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           K+  AL LF  ++ +   A   +    L ACG+L +L  G  IH  ++++       I N
Sbjct: 212 KWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICN 271

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS 203
            ++ MY +   +E A   F    D +  SWNS+I++ A N  L  A+  L  +       
Sbjct: 272 SIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLNGAWDLLQEME------ 325

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
                                SS   P+  +WNS+L+G++ +      L  F  +QS   
Sbjct: 326 ---------------------SSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQSAGF 364

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             D  + ++ L  + GL     G  IH  +++  L+  + V ++L+D Y K   ++ A+ 
Sbjct: 365 KPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEV 424

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +F     KN+  WN++I+GY   G      +L  Q+K    ++PD VT+ ++++  S
Sbjct: 425 VFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKE-EGIKPDLVTWNSLVSGYS 480



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 148/311 (47%), Gaps = 23/311 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  LLRA +        +++HC+ ++ GFL +++++TAL+  Y K   L  AH++
Sbjct: 537 PNSTTICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEV 596

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I + ++  WN ++ GY   G   +   LF E+ ++ +  DA +FT+ L+ C   G +
Sbjct: 597 FRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTALLSGCKNSGLV 656

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIA 178
             G     S    Y++   +   +C++D+ GK G +++A+     +  K D   W +V+A
Sbjct: 657 MDGWKYFDSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKADASIWGAVLA 716

Query: 179 ASARNGNL---ELAFGFLHRLPNPDTISYNEVINGIAQF---GDIE--DAIMILSSMPSP 230
           A   + ++   E+A   L RL   ++ +Y  ++N  + F   GD+E     M    +  P
Sbjct: 717 ACRLHKDIKIAEIAARNLLRLEPYNSANYALMMNIYSTFDRWGDVERLKESMTALGVKIP 776

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
           N  SW           +V + +H+F   + K  P +   +  +   I+ +  L  G ++ 
Sbjct: 777 NVWSW----------IQVKQTIHVFS-TEGKSHPEEGEIYFELYQLISEIKKL--GYVLD 823

Query: 291 SCVIKQGLDAS 301
              + Q +D S
Sbjct: 824 INCVHQNIDDS 834



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 162/367 (44%), Gaps = 15/367 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +   L+A   LG     +++H YI++S    +V+V T+L+  Y K + L  A  +
Sbjct: 366 PDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVV 425

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F      ++ +WNSLISGY   G +  A  L  +++   I  D  ++ S ++     G  
Sbjct: 426 FHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRS 485

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA-- 178
           +  +A+ ++I    L   VV    +I    +  +  DA+  F +M ++++   ++ I   
Sbjct: 486 EEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICTL 545

Query: 179 --ASARNGNLELA-----FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
             A A +  L++      F   H   + D      +I+   + G ++ A  +  ++    
Sbjct: 546 LRACAGSSLLKIGEEIHCFSMRHGFLD-DIYIATALIDMYGKGGKLKVAHEVFRNIKEKT 604

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI--AGLSALTWGMLI 289
              WN ++ GY       E   LF EM+   V  D  TF+ +LSG   +GL    W    
Sbjct: 605 LPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTALLSGCKNSGLVMDGWKYF- 663

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK-NLVTWNAMITGYARNGD 348
            S      ++ +I   S ++D+  K G ++ A     ++ +K +   W A++     + D
Sbjct: 664 DSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKADASIWGAVLAACRLHKD 723

Query: 349 LTKVIEL 355
           + K+ E+
Sbjct: 724 I-KIAEI 729



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 2/168 (1%)

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVN-RNRVPEALHLFGEMQSKDVPMDEYTFS 271
           QFGD E A  +     + N   WNS +  + +      E L +F E+  K V  D    +
Sbjct: 76  QFGDFESATKVFFVGFARNYLLWNSFIEEFASFGGDSHEILAVFKELHDKGVKFDSKALT 135

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
            +L     L  L  GM +H+C++K+G    + ++ AL+++Y K   ++ A+ +F     +
Sbjct: 136 VVLKICLALMELWLGMEVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDETPLQ 195

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
               WN ++    R+      +ELF ++++      D  T + +L AC
Sbjct: 196 EDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDG-TIVKLLQAC 242


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 161/568 (28%), Positives = 280/568 (49%), Gaps = 75/568 (13%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGF--YRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H  I+K+G  +  F  + L+ F       +L+ A  +F  I QP+   WN++I G  
Sbjct: 49  KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNS 108

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
            S     A++ +V +    +  ++Y+F   L +C ++G+ Q G  IH  ++K  LE    
Sbjct: 109 LSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPF 168

Query: 141 IANCLIDMYGKCGSV-------------------------------EDAIGVFGEMIDKD 169
           +   LI+MY + G +                               +DA  +F E+  +D
Sbjct: 169 VHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRD 228

Query: 170 IISWNSVIAASARNGNLELAFGFLHRL------PNPDTIS-------------------- 203
            +SWN++IA  A++G  E A  F   +      PN  T+                     
Sbjct: 229 AVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRS 288

Query: 204 -------------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE 250
                         N +I+  ++ GD++ A  +   +   +  SWN ++ GY + N   E
Sbjct: 289 WIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKE 348

Query: 251 ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD-ASIVVASALL 309
           AL LF +MQ  +V  ++ TF ++L   A L AL  G  IH+ + K+ L   +  + ++L+
Sbjct: 349 ALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLI 408

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
           DMY+KCG +E A  +F  +  K+L +WNAMI+G A +G     +ELF Q++     +PD 
Sbjct: 409 DMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRD-EGFEPDD 467

Query: 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429
           +TF+ VL+ACSH  +  +   + F SM +DY I P ++H   MI L+G+ G    A+ ++
Sbjct: 468 ITFVGVLSACSHAGL-VELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALM 526

Query: 430 RELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD 489
           + +     G +W +LL A     ++++   +A  + +LE ++   YV+L N+Y + G WD
Sbjct: 527 KNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWD 586

Query: 490 VASVMRNFMRERGLRKEAGCSWIEVENV 517
             + +R  + ++G++K  GCS IEV++V
Sbjct: 587 DVARIRTKLNDKGMKKVPGCSSIEVDSV 614


>gi|116310106|emb|CAH67125.1| H0315E07.3 [Oryza sativa Indica Group]
 gi|222628896|gb|EEE61028.1| hypothetical protein OsJ_14863 [Oryza sativa Japonica Group]
          Length = 655

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 156/532 (29%), Positives = 272/532 (51%), Gaps = 53/532 (9%)

Query: 43  ALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL------- 95
           AL+  Y +   +A+A ++F  IP  +VVSWN+++SGY ++G  ++A  LF  +       
Sbjct: 101 ALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVS 160

Query: 96  ---------------ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE-RGV 139
                          E  E++    S  +++      G ++LG    ++++   ++ R  
Sbjct: 161 WLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNP 220

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
           V  N +I  Y + GS+  A  +F EM +KD++S  +++    +NG+++ A+     +P+ 
Sbjct: 221 VSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHR 280

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR----------NRVP 249
           DT+++N +++G  +   ++DA+ + S MP  +  SWN+IL GYV +           R P
Sbjct: 281 DTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAP 340

Query: 250 E-----------------ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
                             AL L  EM    +  D+ T S ++S  A L +L  G ++H  
Sbjct: 341 NKDAISWNTLISGYKDEGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLW 400

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
            IK G +   +V S+L+ MYSKCG +  A  +F  + +++ VTWNAMI  YA +G   + 
Sbjct: 401 AIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEA 460

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412
           +++F+ + T    +PD  TFL++L+AC+H    ++    +F SM +D+ + P  +H   M
Sbjct: 461 LKVFDMM-TKAGFRPDHATFLSILSACAHKGYLYEGCY-HFRSMQEDWNLVPRSDHYSCM 518

Query: 413 IRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472
           + L+G+ G + +A    R +        W  L S   +  ++ +  I A  V+K      
Sbjct: 519 VDLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFSVCNSHGEIQLGEIIARNVLKARPSDG 578

Query: 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE-NVAAHSSN 523
            +Y +L N+Y +   W  A+ +R FM+ERGL+KE GCSWIE++  V   SSN
Sbjct: 579 GMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIELKGEVVTFSSN 630



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 144/299 (48%), Gaps = 47/299 (15%)

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+ + +V +WN ++SG +                R+ + A+A     A+         
Sbjct: 57  FDEMSERNVFTWNCMVSGLI----------------RNRMLAEARKVFDAMPV------- 93

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
                           R  V    L+  Y +CG V +A  +F  + D++++SWN++++  
Sbjct: 94  ----------------RNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGY 137

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           ARNG ++ A      +P  D +S+  +I+G  +   + +A  +  SMPSP +S  N++L+
Sbjct: 138 ARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLS 197

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GYV    +  A  LFG+MQ++    +  +++ M++G A   +    M I   +  +  + 
Sbjct: 198 GYVELGYMRAAEVLFGQMQTR----NPVSWNVMITGYARAGS----MGIAQRLFDEMPEK 249

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            ++  +A++  Y + G V+ A  +F+ +  ++ V WN M+ G+ RN  L   ++LF ++
Sbjct: 250 DVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEM 308



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 105/262 (40%), Gaps = 66/262 (25%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL- 95
           +V   TA+M  Y +  S+  A K+F ++P    V+WN+++ G+V++ +   AL LF E+ 
Sbjct: 250 DVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMP 309

Query: 96  ERSEIY--------------------------ADAYSFTSALAACGQLGSLQL------- 122
           +R +I                            DA S+ + ++     G+L L       
Sbjct: 310 DRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEGALSLLSEMIRG 369

Query: 123 ------------------------GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
                                   G  +H   +K   E   ++ + LI MY KCG + +A
Sbjct: 370 GLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEA 429

Query: 159 IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQF 214
             VF  ++ +D ++WN++IA  A +G  + A      +      PD  ++  +++  A  
Sbjct: 430 SQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHK 489

Query: 215 GDIEDAIMILSSMPSPNSSSWN 236
           G + +      SM       WN
Sbjct: 490 GYLYEGCYHFRSM----QEDWN 507



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H + +K+GF  +  V ++L+  Y K   +++A ++F  I Q   V+WN++I+ Y   
Sbjct: 395 KMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYH 454

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG-MAIHSKIVKYSLERGVVI 141
           G   +AL +F  + ++    D  +F S L+AC   G L  G     S    ++L      
Sbjct: 455 GLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDH 514

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKD--IISWNSVIAASARNGNLELA 189
            +C++D+ G+ G +  A   F   I  D    +W ++ +    +G ++L 
Sbjct: 515 YSCMVDLLGRSGFIHQAYD-FTRRIPSDHRTTAWETLFSVCNSHGEIQLG 563


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 157/537 (29%), Positives = 266/537 (49%), Gaps = 44/537 (8%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGF-YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q+  + + SG   +  VS+ L+ +     +  A +  +F +I +P+V SWN +   Y +S
Sbjct: 46  QILSHAIASGVFRDPVVSSKLLYYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRS 105

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
               + + L+  + R+    D YSF   L AC +L  L  G  IHS  +K  +   V + 
Sbjct: 106 SFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQ 165

Query: 143 NCLIDMYGKCGSVEDAIGVFGEM--IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           N LI  +  CG+VE A  VF  +  + +D++SWNS+I+   ++   ELA      L    
Sbjct: 166 NALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDG 225

Query: 201 TISYNEV--------------------INGI--------------------AQFGDIEDA 220
           ++S +EV                    I+G+                    ++ G IEDA
Sbjct: 226 SLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDA 285

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             +   +P  N+  W S++ GY   +   EA+ LF EMQ      D  T + +LS     
Sbjct: 286 RKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHW 345

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
            AL  G  IH    +  ++  +   +AL+ MYSKCG ++ A  +F  L + ++ +W+A+I
Sbjct: 346 GALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVI 405

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           +G A NG+  K + LF Q++ + D++P+ +TFL VL AC+H     DK   YF +MT+ Y
Sbjct: 406 SGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGF-VDKGLYYFNAMTQIY 464

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
            + P +EH   M+ L+G+   +  A++ IR L      V+WR+LL A     ++++A  +
Sbjct: 465 NLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFA 524

Query: 461 AAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           A ++ +LE       V+L N+Y S   W     +R  M  + ++K+ GCS++E++ +
Sbjct: 525 AKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDMATQRIKKQPGCSFVEIDGL 581



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 127/484 (26%), Positives = 215/484 (44%), Gaps = 63/484 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A + L      +++H   LK G   +VFV  AL+  +    ++  A  +
Sbjct: 125 PDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAV 184

Query: 61  FVEIPQ--PSVVSWNSLISGYVQSGKYRKALNLFVE-LERSEIYADAYSFTSALAACGQL 117
           F  +P     VVSWNS+ISGY+QS +Y  AL +F E L    +  D  +  SAL+ CG+L
Sbjct: 185 FDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRL 244

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
           G L LG  IH           V + + LIDMY KCG +EDA  VF  +  ++ + W S+I
Sbjct: 245 GLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMI 304

Query: 178 AASARNGNLELAF---------GF-------------------------LHRLPNPDTI- 202
           A  A++   + A          GF                         +H     ++I 
Sbjct: 305 AGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIE 364

Query: 203 ----SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
               + N +I   ++ GDI+ A+ I   +  P+  SW+++++G        +ALHLF +M
Sbjct: 365 MDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQM 424

Query: 259 QS-KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-QGLDASIVVASALLDMYSKCG 316
           +   D+  +E TF  +L        +  G+   + + +   L   I     ++D+  +  
Sbjct: 425 EMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRAN 484

Query: 317 QVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFE-QLKTVRDLQPD----SV 370
            +  A+   R+L  + ++V W +++     +G+    IEL E   K + +L+P      V
Sbjct: 485 LLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGN----IELAEFAAKQIEELEPRRCGARV 540

Query: 371 TFLNVLAACSH-TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429
              NV A+ S   D+   +     + + K  G        CS + + G   E++ A R  
Sbjct: 541 LLSNVYASASRWGDVKRVRKDMATQRIKKQPG--------CSFVEIDGLVHELFVADRSH 592

Query: 430 RELG 433
            E+G
Sbjct: 593 PEMG 596


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 153/484 (31%), Positives = 256/484 (52%), Gaps = 14/484 (2%)

Query: 40  VSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE 99
           ++  LM  Y      + A  +F    + +VV +N +I  YV +  Y +AL++F  +    
Sbjct: 73  LAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCA 132

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159
              D Y+F   L AC  L +L++G+ +H  IVK  L+  + I N L+ MYGKCG + +A 
Sbjct: 133 FNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREAR 192

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNE------VINGIAQ 213
            V  +M  +D++SWNS++A  A++G  + A      +   D+++ N        ++ +  
Sbjct: 193 KVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEM---DSLNLNHDAGTMASLSPVVC 249

Query: 214 FGDIEDAIMI---LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
           +  +E+   I      M   N  SWN ++  YVN +   EA+ LF +M+   +  D  T 
Sbjct: 250 YTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTI 309

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
           +++L     LSAL  G  +H  + K  L  ++++ +ALLDMY+KCG +E A  +F  +  
Sbjct: 310 ASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRL 369

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
           +++V+W +M++ Y R+G     + LF ++       PDS+ F++VL+ACSHT +  D+  
Sbjct: 370 RDVVSWTSMMSAYGRSGQGYDAVALFAKMLD-SGQNPDSIAFVSVLSACSHTGL-LDQGR 427

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450
            YF  MT+ YGI P +EH   M+ L G+ GEV  A   I+++       VW ALLSA   
Sbjct: 428 HYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRV 487

Query: 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCS 510
            S +D+  ++A  + +L       YV+L N+Y   G W     +R  M++ G++K  G S
Sbjct: 488 HSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGIS 547

Query: 511 WIEV 514
            +E+
Sbjct: 548 NVEL 551



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 170/355 (47%), Gaps = 18/355 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A S L       Q+H  I+K G  +N+F+  AL+  Y K   L +A K+
Sbjct: 135 PDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKV 194

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
             ++P   VVSWNS+++GY QSG++  AL +  E++   +  DA +  S L+      SL
Sbjct: 195 LDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMAS-LSPVVCYTSL 253

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM----IDKDIISWNSV 176
           +    IH+   + + ++ ++  N +I +Y       +A+ +F +M    +  D ++  S+
Sbjct: 254 ENVQYIHNMFERMT-KKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASL 312

Query: 177 IAASARNGNLELAF--GFLHRLP-----NPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           + A    G+L   F    LH+        P+ +  N +++  A+ G +E+A  +   M  
Sbjct: 313 LPAC---GDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRL 369

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            +  SW S+++ Y    +  +A+ LF +M       D   F ++LS  +    L  G   
Sbjct: 370 RDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHY 429

Query: 290 HSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITG 342
              + +Q G+   I   + ++D++ + G+VE A S  + +    N   W A+++ 
Sbjct: 430 FRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSA 484



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 130/272 (47%), Gaps = 14/272 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL A  DL      ++LH YI K     N+ +  AL+  Y K   L +A  +
Sbjct: 304 PDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDV 363

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++    VVSW S++S Y +SG+   A+ LF ++  S    D+ +F S L+AC   G L
Sbjct: 364 FDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLL 423

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G      +  +Y +   +    C++D++G+ G VE+A     +M ++ +   W ++++
Sbjct: 424 DQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLS 483

Query: 179 ASARNGNLEL---AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM-------- 227
           A   +  +++   A   L +L    +  Y  + N  A+ G  +D + +  +M        
Sbjct: 484 ACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKV 543

Query: 228 PSPNSSSWNSILTGYVNRNRV-PEALHLFGEM 258
           P  ++   N  +  ++  ++  P+A +++GE+
Sbjct: 544 PGISNVELNGQVHTFLAGDQYHPQAKNIYGEL 575



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 14/123 (11%)

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHS-CVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +V +D+Y       GI  L+ L      HS  VI + L     +A  L+  YS  G+  +
Sbjct: 42  EVILDQY------PGIKTLNKL------HSKIVINEHLRIDPTLAIKLMRAYSAQGETSV 89

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F     KN+V +N MI  Y  N    + + +F+ + +     PD  TF  VL ACS
Sbjct: 90  ARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCA-FNPDHYTFPCVLKACS 148

Query: 381 HTD 383
             D
Sbjct: 149 GLD 151


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 153/521 (29%), Positives = 262/521 (50%), Gaps = 42/521 (8%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE- 94
           SNVFVSTAL+  Y K+  + DA  +F E+P  + VSW ++++GY      ++A  LF + 
Sbjct: 151 SNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQM 210

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           L    ++ + +  T+ L+A      L +G+ +H  +VK  +   V + N L+ MY K G 
Sbjct: 211 LGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGC 270

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA---FGFLHRLPNPDT---------- 201
           ++ A  VF    +++ I+W+++I   ++NGN E A   F  +H    P T          
Sbjct: 271 MDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNA 330

Query: 202 --------------------------ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSW 235
                                        + +++  A+ G I DA    +     +   W
Sbjct: 331 CSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLW 390

Query: 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
            +++TG+V      +AL L+  M  + V  +  T +++L   AGL+AL  G  +H+ ++K
Sbjct: 391 TAMVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILK 450

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
            G      V SAL  MYSKCG +E    +FR +  ++++ WN++I+G+++NG     I L
Sbjct: 451 FGFGLGASVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINL 510

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415
           FE++K +    PD VTF+NVL ACSH  +  D+   YF SM KDYG+ P ++H   M+ +
Sbjct: 511 FEEMK-LEGTAPDPVTFINVLCACSHMGL-VDRGWTYFRSMIKDYGLTPRLDHYACMVDI 568

Query: 416 MGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475
           + + G +  A+  I  +       +WR +L A  +  D DV   +  +++ L       Y
Sbjct: 569 LSRAGMLSEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEKLMDLGTGDSAAY 628

Query: 476 VMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           ++L N+Y +   W+    +R  M+  G+ K+ GCSW+E+ +
Sbjct: 629 ILLSNIYAAQRKWNDVERVRYLMKLVGVSKDPGCSWVELNS 669



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 127/231 (54%), Gaps = 4/231 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P E+ L  +L A SD+G     +Q H  ++K GF   V+V +AL+  Y K   + DA + 
Sbjct: 319 PTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKEC 378

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +  +  +V W ++++G+VQ+G++ +AL L+  +++  ++ +  + TS L AC  L +L
Sbjct: 379 FNQFSELDIVLWTAMVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAAL 438

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H++I+K+    G  + + L  MY KCG++ED + VF  M  +D+I+WNS+I+  
Sbjct: 439 EPGKQLHTQILKFGFGLGASVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGF 498

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           ++NG    A      +      PD +++  V+   +  G ++       SM
Sbjct: 499 SQNGRGNDAINLFEEMKLEGTAPDPVTFINVLCACSHMGLVDRGWTYFRSM 549



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 187/418 (44%), Gaps = 50/418 (11%)

Query: 8   HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSL--ADAHKMFVEIP 65
           HL RAS     +     LH + LKSG  S+  VS +L+ FY     L    A  +F +IP
Sbjct: 21  HLRRASRPRDGEA----LHAWALKSGSSSHAPVSNSLITFYSSFPRLFLPAAFAVFADIP 76

Query: 66  QPS--VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
             +  V SWNSL++            +    L  S I    +SF +A  A  +  S   G
Sbjct: 77  AAARDVASWNSLLNPLSHHRPLAALSHFRSMLSSSTILPSPHSFAAAFTAAARAHSASAG 136

Query: 124 MAIHSKIVKY-SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR 182
             +H+   K  S    V ++  L++MY K G + DA  VF EM  ++ +SW +++A  A 
Sbjct: 137 AVVHALACKLPSASSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAA 196

Query: 183 NGNLELAFGFLHRLPNPDTISYNEVI--------------------------NGIAQFGD 216
               + AF    ++     +  NE +                          +G+  F  
Sbjct: 197 RKCSQEAFELFRQMLGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVS 256

Query: 217 IEDAIM--------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
           +E++++              +  S    NS +W++++TGY        A+ +F +M +  
Sbjct: 257 VENSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAG 316

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
            P  E+T   +L+  + +  L  G   H  ++K G +  + V SAL+DMY+KCG +  A 
Sbjct: 317 FPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAK 376

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             F      ++V W AM+TG+ +NG+  + + L+ ++     + P+++T  ++L AC+
Sbjct: 377 ECFNQFSELDIVLWTAMVTGHVQNGEFEQALMLYARMDK-EGVFPNTLTITSLLRACA 433



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 164/368 (44%), Gaps = 42/368 (11%)

Query: 2   NEYVLFHLLRA-SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           NE+V   +L A S  LG     Q +H  ++K G +  V V  +L+  Y K   +  A  +
Sbjct: 219 NEFVATAVLSAISVPLGLPMGVQ-VHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFHV 277

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    + + ++W+++I+GY Q+G    A+ +F ++  +      ++    L AC  +G+L
Sbjct: 278 FESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTL 337

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G   H  +VK   E  V + + L+DMY KCG + DA   F +  + DI+ W +++   
Sbjct: 338 MEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGH 397

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIA------------------------ 212
            +NG  E A     R+      P+T++   ++   A                        
Sbjct: 398 VQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGA 457

Query: 213 -----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                      + G++ED +++   MP  +  +WNSI++G+    R  +A++LF EM+ +
Sbjct: 458 SVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINLFEEMKLE 517

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEI 320
               D  TF  +L   + +  +  G      +IK  GL   +   + ++D+ S+ G +  
Sbjct: 518 GTAPDPVTFINVLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDHYACMVDILSRAGMLSE 577

Query: 321 ADSMFRSL 328
           A     S+
Sbjct: 578 AKDFIESI 585



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 2/181 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  LLRA + L      +QLH  ILK GF     V +AL   Y K  +L D   +
Sbjct: 420 PNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGASVGSALSTMYSKCGNLEDGMVV 479

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P   V++WNS+ISG+ Q+G+   A+NLF E++      D  +F + L AC  +G +
Sbjct: 480 FRRMPHRDVIAWNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPVTFINVLCACSHMGLV 539

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G      ++K Y L   +    C++D+  + G + +A      + ID     W  V+ 
Sbjct: 540 DRGWTYFRSMIKDYGLTPRLDHYACMVDILSRAGMLSEAKDFIESITIDHGTCLWRIVLG 599

Query: 179 A 179
           A
Sbjct: 600 A 600


>gi|413952592|gb|AFW85241.1| hypothetical protein ZEAMMB73_384525 [Zea mays]
          Length = 683

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 151/521 (28%), Positives = 266/521 (51%), Gaps = 52/521 (9%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL------ 95
           + L+G Y +   + +A ++F E+P  +  SWN++I+G+   G+ RKALN+F  +      
Sbjct: 136 STLLGAYTRRGLMEEAQRLFDEMPHRNASSWNTMITGFFAVGQMRKALNVFAAMPDKDSA 195

Query: 96  ----------------ERSEIYADAYS----------FTSALAACGQLGSLQLGMAIHSK 129
                           E  ++     +          F + +AA GQ G +     + S 
Sbjct: 196 SLSAMVSGFIRNGRLHEADDLLTKRLTVMDMDKAVGAFNTLIAAYGQTGRVTDARRLFSM 255

Query: 130 IVKYS----------LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           I K             ER VV  N ++  Y + G V  A  +F EM  KD++SWN++IA 
Sbjct: 256 IPKTQNQHKGHKRMVFERNVVSWNSMMMCYIRTGDVCSARALFDEMPHKDLVSWNTMIAG 315

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
             +   +E A      +P+PD +++N +I G  Q GD+E A      MP  ++ +WN+++
Sbjct: 316 YTQASEMEEAEKLFWEVPDPDAVTWNLMIRGFTQKGDVEHARGFFDRMPERSTITWNTMI 375

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           +GY         + LF  M       D +T S++L+  A L+ L  G  +H  + K  L 
Sbjct: 376 SGYEQNEDYDSTIKLFQRMLEVGERPDHHTLSSVLAACASLAMLRLGAQLHQLIEKSFL- 434

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
                 +AL+ MYS+CG++  A ++F  +  ++++V+WNA+I GY + G+ T+ + LFE+
Sbjct: 435 PDTATNNALMTMYSRCGELISAKAIFGHMHTQRDIVSWNALIGGYEQQGNATEALRLFEE 494

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRL 415
           +++ + + P  +TF+++L+AC +  +    VSE    F +M  DYG+  +VEH  +++ L
Sbjct: 495 MRSAK-VMPTHITFISLLSACGNAGL----VSEGRVVFHTMVHDYGLAASVEHYAALVNL 549

Query: 416 MGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475
           +G+ G++  A  +I+ +       VW A L A  A  +  +A ++A  + K++ DS   Y
Sbjct: 550 IGRHGQLEDALELIKSMPIAPDRAVWGAFLGACTAKKNEPLAEMAANALSKIDPDSSAPY 609

Query: 476 VMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           V++ NL+   G W  AS++R  M   G+ K  G SWI++ +
Sbjct: 610 VLMHNLHAHEGRWGSASLVREDMERLGIHKHPGYSWIDLHD 650



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 170/389 (43%), Gaps = 67/389 (17%)

Query: 43  ALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA 102
           +L+G  R+    + A ++F  +P  SVV+WNSL++   +    R A   F  +   +I  
Sbjct: 42  SLVGLLRR-GRFSAARRLFDALPARSVVTWNSLLAALSRGSDVRAARCFFDAMPVRDI-- 98

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL-ERGVVIANCLIDMYGKCGSVEDAIGV 161
              S+ + L+A  +  SLQ      ++ + Y + +R  V  + L+  Y + G +E+A  +
Sbjct: 99  --ISWNTLLSAYAR--SLQPNDLAAARRLFYEMPQRDAVSWSTLLGAYTRRGLMEEAQRL 154

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS------------------ 203
           F EM  ++  SWN++I      G +  A      +P+ D+ S                  
Sbjct: 155 FDEMPHRNASSWNTMITGFFAVGQMRKALNVFAAMPDKDSASLSAMVSGFIRNGRLHEAD 214

Query: 204 ------------------YNEVINGIAQFGDIEDAIMILSSMPSP--------------N 231
                             +N +I    Q G + DA  + S +P                N
Sbjct: 215 DLLTKRLTVMDMDKAVGAFNTLIAAYGQTGRVTDARRLFSMIPKTQNQHKGHKRMVFERN 274

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SWNS++  Y+    V  A  LF EM  KD+     +++TM++G    S +        
Sbjct: 275 VVSWNSMMMCYIRTGDVCSARALFDEMPHKDL----VSWNTMIAGYTQASEMEEA----E 326

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
            +  +  D   V  + ++  +++ G VE A   F  +  ++ +TWN MI+GY +N D   
Sbjct: 327 KLFWEVPDPDAVTWNLMIRGFTQKGDVEHARGFFDRMPERSTITWNTMISGYEQNEDYDS 386

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            I+LF+++  V + +PD  T  +VLAAC+
Sbjct: 387 TIKLFQRMLEVGE-RPDHHTLSSVLAACA 414



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 146/305 (47%), Gaps = 19/305 (6%)

Query: 34  FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFV 93
           F  NV    ++M  Y +   +  A  +F E+P   +VSWN++I+GY Q+ +  +A  LF 
Sbjct: 271 FERNVVSWNSMMMCYIRTGDVCSARALFDEMPHKDLVSWNTMIAGYTQASEMEEAEKLFW 330

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
           E+       DA ++   +    Q G ++       ++     ER  +  N +I  Y +  
Sbjct: 331 EVPDP----DAVTWNLMIRGFTQKGDVEHARGFFDRMP----ERSTITWNTMISGYEQNE 382

Query: 154 SVEDAIGVFGEMID----KDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYN 205
             +  I +F  M++     D  + +SV+AA A    L L    LH+L      PDT + N
Sbjct: 383 DYDSTIKLFQRMLEVGERPDHHTLSSVLAACASLAMLRLG-AQLHQLIEKSFLPDTATNN 441

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNS-SSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
            ++   ++ G++  A  I   M +     SWN+++ GY  +    EAL LF EM+S  V 
Sbjct: 442 ALMTMYSRCGELISAKAIFGHMHTQRDIVSWNALIGGYEQQGNATEALRLFEEMRSAKVM 501

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLI-HSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
               TF ++LS       ++ G ++ H+ V   GL AS+   +AL+++  + GQ+E A  
Sbjct: 502 PTHITFISLLSACGNAGLVSEGRVVFHTMVHDYGLAASVEHYAALVNLIGRHGQLEDALE 561

Query: 324 MFRSL 328
           + +S+
Sbjct: 562 LIKSM 566



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 42/201 (20%)

Query: 159 IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIE 218
           +GV  +  D  +   N  +    R G    A      LP    +++N ++  +++  D+ 
Sbjct: 25  VGVAADHADGLVRQHNRSLVGLLRRGRFSAARRLFDALPARSVVTWNSLLAALSRGSDVR 84

Query: 219 DAIMILSSMPSPNSSSWNSILTGY---VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275
            A     +MP  +  SWN++L+ Y   +  N +  A  LF EM  +D             
Sbjct: 85  AARCFFDAMPVRDIISWNTLLSAYARSLQPNDLAAARRLFYEMPQRD------------- 131

Query: 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335
                 A++W                    S LL  Y++ G +E A  +F  +  +N  +
Sbjct: 132 ------AVSW--------------------STLLGAYTRRGLMEEAQRLFDEMPHRNASS 165

Query: 336 WNAMITGYARNGDLTKVIELF 356
           WN MITG+   G + K + +F
Sbjct: 166 WNTMITGFFAVGQMRKALNVF 186


>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
 gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 565

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 145/522 (27%), Positives = 265/522 (50%), Gaps = 34/522 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            Q+H ++++ G   + F+ T  +     +  ++ +  +F  +  PS   WNSL+SGY   
Sbjct: 46  HQVHAHLIQKGLEQDSFLVTQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYCAK 105

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            ++   ++L+V ++R +   D Y+F S L  C   G +  GMA+H  I++  ++  + + 
Sbjct: 106 LQFVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVT 165

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
             L+++YGK G ++ A  VF  M +++++SW ++I   +  GNL  A      +P  +  
Sbjct: 166 TSLVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPERNVA 225

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSS---------------------------- 234
           S+N +I G  + GD++ A      MP  N  S                            
Sbjct: 226 SWNAIIGGYMKMGDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAPERD 285

Query: 235 ---WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              W+++++GY    +  EA+  F EM S++V  D++  ++++   + L  L     + S
Sbjct: 286 IIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWVDS 345

Query: 292 CVIKQGLD-ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
              +  +D     V +AL+DM +KCG +E A  +F  + +++L+++ +++ G + +G   
Sbjct: 346 YATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHGHGD 405

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + + LFE++    DL PD V F  +L ACS   +  D+   YFE M   Y + P+V+H  
Sbjct: 406 QAVSLFERMLG-EDLTPDDVAFTVILTACSRAGL-VDEGWHYFEMMRCKYSMVPSVDHYA 463

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            ++ L+ + G +  A  +I+ +   S+   W ALL A     D ++A + A+ +I++E +
Sbjct: 464 CIVDLLSRSGRLKEAYELIKSVPVQSHAGAWGALLGACKLYCDSELAEVVASRLIEIEPE 523

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           +   YV+L N+Y +   W   S +RN M ERGLRK  GCSWI
Sbjct: 524 NAGNYVLLSNIYAAADRWLDVSAVRNQMNERGLRKIPGCSWI 565


>gi|302785251|ref|XP_002974397.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
 gi|300157995|gb|EFJ24619.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
          Length = 679

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 155/531 (29%), Positives = 282/531 (53%), Gaps = 16/531 (3%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           ++++ + LG     +++H  + + G  S+V+VS  L+  Y K  SL +A  +F   P  +
Sbjct: 40  VIQSCARLGALAEGRRIHQLMRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN 99

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS-LQLGMAIH 127
           V SW  LI+   Q G+ ++AL LF E+ +  I   + SFT+A+ AC      L  G A+H
Sbjct: 100 VFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALH 159

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
           + + +Y  +  VV    L+ MY KCGS+E+++  F  M + + +SWN++IAA A +    
Sbjct: 160 ALLRRYGFQDAVVATTSLVSMYSKCGSLEESMRTFESMTEPNAVSWNAMIAAFAEHRRGL 219

Query: 188 LAFGFLHRL------PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTG 241
            A   L ++         D +    ++N  A+   + DA      +  PN  +WN +++ 
Sbjct: 220 EALRTLQKMFLEGIRACSDVVVGTTLVNMYAKCSGLHDANAAFVKLQEPNIITWNVLISA 279

Query: 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301
           YV      EA+ LF  M    + MDE TF  +L       AL  G  IH+CV +  L ++
Sbjct: 280 YVQHCCFKEAMELFRRMLLLGLEMDEVTFINILGACCVPVALEDGRAIHACVREHPLASN 339

Query: 302 -IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
              + + +L+MY KCG ++ A++MF+S+ + +++ WN MI  Y ++G  ++ +  +E ++
Sbjct: 340 HAPLENVILNMYGKCGSLQDAEAMFKSMSQPDVIAWNTMIAAYGQHGHTSEALRFYELMQ 399

Query: 361 TVRDLQPDSVTFLNVL-AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
               + PD  T+++V+ A+C++  +P ++   YF SM +D+G++P   H   M+  +G+ 
Sbjct: 400 E-EGVVPDDYTYVSVIDASCANAGLP-EEAHAYFVSMQQDHGVRPGGGHYGCMVESLGKA 457

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G +  A+ +I+ + F    + W + L+   +  D+   +++A   I+++ ++   YV L 
Sbjct: 458 GRLSDAETLIQCMPFEPDVLTWTSFLANCRSHGDMKRGKLAAKGAIRIDPEASTGYVALA 517

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV-----ENVAAHSSNIR 525
            ++   G++  AS +R  M +RG+RK AG S I++     E  A   SN R
Sbjct: 518 RIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPR 568


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 167/589 (28%), Positives = 287/589 (48%), Gaps = 80/589 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  ++L +L+ + + LG   Y     C +       N++    ++  Y K+  +++   +
Sbjct: 42  PETFLLNNLISSYAKLGSIPYA----CKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYL 97

Query: 61  FVEIPQPSVVSWNSLISGYVQSG---KYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
           F  +P+   VSWNSLISGY   G   +  KA NL ++ + S    +  +F++ L    + 
Sbjct: 98  FDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGS-FNLNRITFSTLLILASKR 156

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGK-------------------------- 151
           G ++LG  IH  +VK+     V + + L+DMY K                          
Sbjct: 157 GCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLI 216

Query: 152 -----CGSVEDAIGVFGEMIDKDIISWNSVIAASARNG---------------NLEL--- 188
                CG VED+  +F EM ++D ISW S+I    +NG               NL++   
Sbjct: 217 MGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQY 276

Query: 189 AFG--------------------FLHRLPNPDTISY-NEVINGIAQFGDIEDAIMILSSM 227
            FG                    ++ R    D I   + +++   +  +I+ A  +   M
Sbjct: 277 TFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKM 336

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
              N  SW ++L GY       EA+  F +MQ   +  D++T  +++S  A L++L  G 
Sbjct: 337 TCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGA 396

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
             H+  +  GL + I V++AL+ +Y KCG +E +  +F  +  K+ VTW A+++GYA+ G
Sbjct: 397 QFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFG 456

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407
              + I LFE +     L+PD VTF+ VL+ACS   +  +K ++ FESM  ++GI P  +
Sbjct: 457 KANETIGLFESM-LAHGLKPDKVTFIGVLSACSRAGL-VEKGNQIFESMINEHGIVPIQD 514

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
           H   MI L  + G +  A+  I ++ F    + W  LLS+     ++D+ + +A  +++L
Sbjct: 515 HYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMEL 574

Query: 468 EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +  +   YV+L ++Y + G W+  + +R  MR++GLRKE GCSWI+ +N
Sbjct: 575 DPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKN 623



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 134/306 (43%), Gaps = 65/306 (21%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
           + + L  C +  +      +HS I+K        + N LI  Y K GS+  A  VF +M 
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
             ++ SWN++++A ++ G +         +P  D +S+N +I+G A  G I  ++     
Sbjct: 72  HPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSV----- 126

Query: 227 MPSPNSSSWNSILT--GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
                  ++N +L   G  N NR+                    TFST+L   +    + 
Sbjct: 127 ------KAYNLMLKNDGSFNLNRI--------------------TFSTLLILASKRGCVK 160

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSK------------------------------ 314
            G  IH  V+K G  + + V S L+DMYSK                              
Sbjct: 161 LGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLM 220

Query: 315 -CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
            CG+VE +  +F  +  ++ ++W +MITG+ +NG     I++F ++K + +LQ D  TF 
Sbjct: 221 RCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMK-LENLQMDQYTFG 279

Query: 374 NVLAAC 379
           +VL AC
Sbjct: 280 SVLTAC 285


>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
 gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
          Length = 766

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 153/556 (27%), Positives = 283/556 (50%), Gaps = 45/556 (8%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +++ L   +RA ++LG     +Q+H + LKS   S++ V  AL+  Y K   + D   +F
Sbjct: 151 DQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLF 210

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL--ERSEIYADAYSFTSALAACGQLGS 119
             I    ++SW S+I+G+ Q G   +AL +F E+  E S  + + + F SA  ACG +GS
Sbjct: 211 ERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSH-HPNEFHFGSAFRACGAVGS 269

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            + G  IH   +KY L+R + +   L DMY +C +++ A   F  +   D++SWNS++ A
Sbjct: 270 WEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNA 329

Query: 180 SARNGNLELAFGFLHRLPN----PDTISY------------------------------- 204
            +  G L  A      + +    PD I+                                
Sbjct: 330 YSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGD 389

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +++  A+  D+  A+ +   +   +  +WNSILT     N   E L LF  +  
Sbjct: 390 VSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNK 449

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            +  +D  + + +LS  A L        +H+   K GL    ++++ L+D Y+KCG ++ 
Sbjct: 450 SEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDD 509

Query: 321 ADSMFRSLCR-KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           A  +F  +   +++ +W+++I GYA+ G   +  +LF +++++  ++P+ VTF+ VL AC
Sbjct: 510 AMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSL-GIRPNHVTFIGVLTAC 568

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           S      ++   Y+  M  +YGI PT EHC  ++ L+ + G++  A   I ++ F    +
Sbjct: 569 SRVGF-VNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDII 627

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W+ LL+AS   +D+++ + +A  ++ ++      YV+LCN+Y + GNW+  + ++  MR
Sbjct: 628 MWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMR 687

Query: 500 ERGLRKEAGCSWIEVE 515
             G++K  G SW++++
Sbjct: 688 TSGVKKSPGKSWVKLK 703



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 187/382 (48%), Gaps = 41/382 (10%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           N  +   L+  Y +  +   A ++F E+P  + VSW S+I+ +VQ+G+   AL LF  + 
Sbjct: 85  NTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSML 144

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           RS   AD ++  SA+ AC +LG +  G  +H+  +K      +++ N L+ MY K G V+
Sbjct: 145 RSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVD 204

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNG-------------------NLELAFGFLHRLP 197
           D   +F  + DKD+ISW S+IA  A+ G                     E  FG   R  
Sbjct: 205 DGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRAC 264

Query: 198 NP-DTISYNEVINGI--------------------AQFGDIEDAIMILSSMPSPNSSSWN 236
               +  Y E I+G+                    A+  +++ A +    + +P+  SWN
Sbjct: 265 GAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWN 324

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           SI+  Y     + EAL LF EM+   +  D  T   +L    G  AL  G LIHS ++K 
Sbjct: 325 SIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKL 384

Query: 297 GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
           GLD  + V ++LL MY++C  +  A  +F  +  +++VTWN+++T  A++    +V++LF
Sbjct: 385 GLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLF 444

Query: 357 EQLKTVRDLQPDSVTFLNVLAA 378
             L    +   D ++  NVL+A
Sbjct: 445 SLLNK-SEPSLDRISLNNVLSA 465



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 176/391 (45%), Gaps = 42/391 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+      RA   +G   Y +Q+H   +K     +++V  +L   Y +  +L  A   
Sbjct: 252 PNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVA 311

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I  P +VSWNS+++ Y   G   +AL LF E+  S +  D  +    L AC    +L
Sbjct: 312 FYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDAL 371

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IHS +VK  L+  V + N L+ MY +C  +  A+ VF E+ D+D+++WNS++ A 
Sbjct: 372 YHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTAC 431

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQF---------------------- 214
           A++ + E        L    P+ D IS N V++  A+                       
Sbjct: 432 AQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDR 491

Query: 215 -------------GDIEDAIMILSSMPSPNSS-SWNSILTGYVNRNRVPEALHLFGEMQS 260
                        G ++DA+ +   M +     SW+S++ GY       EA  LF  M+S
Sbjct: 492 MLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRS 551

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQV- 318
             +  +  TF  +L+  + +  +  G   +S +  + G+  +    S ++D+ ++ G++ 
Sbjct: 552 LGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLT 611

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           E A+ + +     +++ W  ++     + D+
Sbjct: 612 EAANFIDQMPFEPDIIMWKTLLAASKMHNDM 642



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 170/389 (43%), Gaps = 53/389 (13%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYS-------LERGVVIANCLIDMYGKCGSVEDAI 159
           + + ++AC +L SL  G  +H  +V  S       L    V+ N LI MYG+C + + A 
Sbjct: 47  YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSAR 106

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFL-------------------------- 193
            VF EM  ++ +SW SVIAA  +NG    A G                            
Sbjct: 107 QVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 166

Query: 194 ----------HRLPNP---DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                     H L +    D I  N ++   ++ G ++D  M+   +   +  SW SI+ 
Sbjct: 167 DVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIA 226

Query: 241 GYVNRNRVPEALHLFGEM--QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           G+  +    EAL +F EM  +    P +E+ F +       + +  +G  IH   IK  L
Sbjct: 227 GFAQQGFEMEALQVFREMIVEGSHHP-NEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRL 285

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
           D  + V  +L DMY++C  ++ A   F  +   +LV+WN+++  Y+  G L++ + LF +
Sbjct: 286 DRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSE 345

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           ++    L+PD +T   +L AC   D  +        S     G+   V  C S++ +  +
Sbjct: 346 MRD-SGLRPDGITVRGLLCACVGRDALYH--GRLIHSYLVKLGLDGDVSVCNSLLSMYAR 402

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSA 447
             ++  A  +  E+      V W ++L+A
Sbjct: 403 CSDLSSAMDVFHEIKDQDV-VTWNSILTA 430



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 129/308 (41%), Gaps = 37/308 (12%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           +T+  N +I    +    + A  +   MP+ N  SW S++  +V   R  +AL LF  M 
Sbjct: 85  NTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSML 144

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
                 D++   + +     L  +  G  +H+  +K    + ++V +AL+ MYSK G V+
Sbjct: 145 RSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVD 204

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
               +F  +  K+L++W ++I G+A+ G   + +++F ++       P+   F +   AC
Sbjct: 205 DGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRAC 264

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
                      EY E +           H  S+              R+ R+L  G    
Sbjct: 265 GAV-----GSWEYGEQI-----------HGLSI------------KYRLDRDLYVGC--- 293

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
              +L      C +LD AR++     ++E      +  + N Y+  G    A V+ + MR
Sbjct: 294 ---SLSDMYARCKNLDSARVA---FYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMR 347

Query: 500 ERGLRKEA 507
           + GLR + 
Sbjct: 348 DSGLRPDG 355


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 151/517 (29%), Positives = 265/517 (51%), Gaps = 34/517 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+       L A + L    + +QLH  ++++    + +V++A++  Y K     +A ++
Sbjct: 289 PDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRV 348

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   + VSW  LI G++Q G + +++ LF ++    +  D ++  + ++ C     +
Sbjct: 349 FSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDI 408

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  +HS  +K    R VV++N LI MY KCG++++A                      
Sbjct: 409 CLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNA---------------------- 446

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                 EL F F+      D +S+  +I   +Q G+I  A      M + N  +WN++L 
Sbjct: 447 ------ELIFNFM---AERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLG 497

Query: 241 GYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            Y+      + L ++ +M   KDV  D  T+ T+  G A + A   G  I    +K GL 
Sbjct: 498 AYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLI 557

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
               V +A++ MYSKCG++  A   F  L RK+LV+WNAMITGY+++G   + IE+F+ +
Sbjct: 558 LDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDI 617

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
              +  +PD ++++ VL+ CSH+ +  ++   YF+ M +D+ I P +EH   M+ L+G+ 
Sbjct: 618 LN-KGAKPDYISYVAVLSGCSHSGL-VEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRA 675

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G +  A+ +I E+       VW ALLSA     + D+A ++A  +  L+      Y++L 
Sbjct: 676 GHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLA 735

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            +Y   G  D ++ +R  MR++G++K  G SW+EV N
Sbjct: 736 KMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNN 772



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 176/347 (50%), Gaps = 33/347 (9%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV     +M  Y K+ SL+DA ++F  +P   V SWN+++SGY QSG++  AL++FV + 
Sbjct: 91  NVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMR 150

Query: 97  RS-EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
           ++ +   +A++F   + +CG LG  ++ + +   + K+  +    +   L+DM  +CG++
Sbjct: 151 QTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAM 210

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFG 215
           + A   F                                R+ NP  I  N ++ G A+  
Sbjct: 211 DFASKQFS-------------------------------RIKNPTIICRNSMLVGYAKSH 239

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275
            ++ A+ I  SMP  +  SWN +++      RV EAL +  +M  K V  D  T+++ L+
Sbjct: 240 GVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLT 299

Query: 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335
             A LS+L WG  +H  VI+        VASA++++Y+KCG  + A  +F SL  +N V+
Sbjct: 300 ACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVS 359

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           W  +I G+ + G  ++ +ELF Q++    +  D      +++ C +T
Sbjct: 360 WTVLIGGFLQYGCFSESVELFNQMRA-ELMAVDQFALATLISGCCNT 405



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 106/459 (23%), Positives = 207/459 (45%), Gaps = 56/459 (12%)

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF-GE 164
           +   AL +CG   +L     +HS+++   L   V + N L+  Y  CG++ DA  +   E
Sbjct: 27  ALADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDE 86

Query: 165 MIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMIL 224
           + + ++I+ N ++   A+ G+L  A     R+P  D  S+N +++G  Q G   +A+ I 
Sbjct: 87  ITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIF 146

Query: 225 SSMPS-----PNSSSWNSILT--GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277
            SM       PN+ ++  ++   G +  + V  AL L G +   D   D    + ++  +
Sbjct: 147 VSMRQTGDSLPNAFTFGCVMKSCGALGWHEV--ALQLLGLLSKFDSQDDPDVQTALVDML 204

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
               A+ +     S    +  + +I+  +++L  Y+K   V+ A  +F+S+  +++V+WN
Sbjct: 205 VRCGAMDFA----SKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWN 260

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIPFDKVSEYFESM 396
            +I+  +++G + + +++   +   + ++PDS T+ + L AC+  + + + K   + + +
Sbjct: 261 MVISALSKSGRVREALDMVVDMHG-KGVRPDSTTYTSSLTACARLSSLEWGK-QLHVQVI 318

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-------------GFGSYGVV--- 440
                I P V    +M+ L  + G    A+R+   L             GF  YG     
Sbjct: 319 RNLPHIDPYV--ASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSES 376

Query: 441 ------WRALLSA----------SGACSDLDVARISAAEVIKLEGDSDYVYVM---LCNL 481
                  RA L A          SG C+ +D+   S    + L+       V+   L ++
Sbjct: 377 VELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISM 436

Query: 482 YTSHGNWDVASVMRNFMRERGLRKEAG--CSWIEVENVA 518
           Y   GN   A ++ NFM ER +    G   ++ +V N+A
Sbjct: 437 YAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIA 475


>gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa Japonica Group]
          Length = 729

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 156/532 (29%), Positives = 272/532 (51%), Gaps = 53/532 (9%)

Query: 43  ALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL------- 95
           AL+  Y +   +A+A ++F  IP  +VVSWN+++SGY ++G  ++A  LF  +       
Sbjct: 101 ALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVS 160

Query: 96  ---------------ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE-RGV 139
                          E  E++    S  +++      G ++LG    ++++   ++ R  
Sbjct: 161 WLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNP 220

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
           V  N +I  Y + GS+  A  +F EM +KD++S  +++    +NG+++ A+     +P+ 
Sbjct: 221 VSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHR 280

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR----------NRVP 249
           DT+++N +++G  +   ++DA+ + S MP  +  SWN+IL GYV +           R P
Sbjct: 281 DTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAP 340

Query: 250 E-----------------ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
                             AL L  EM    +  D+ T S ++S  A L +L  G ++H  
Sbjct: 341 NKDAISWNTLISGYKDEGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLW 400

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
            IK G +   +V S+L+ MYSKCG +  A  +F  + +++ VTWNAMI  YA +G   + 
Sbjct: 401 AIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEA 460

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412
           +++F+ + T    +PD  TFL++L+AC+H    ++    +F SM +D+ + P  +H   M
Sbjct: 461 LKVFDMM-TKAGFRPDHATFLSILSACAHKGYLYEGCY-HFRSMQEDWNLVPRSDHYSCM 518

Query: 413 IRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472
           + L+G+ G + +A    R +        W  L S   +  ++ +  I A  V+K      
Sbjct: 519 VDLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFSVCNSHGEIQLGEIIARNVLKARPSDG 578

Query: 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE-NVAAHSSN 523
            +Y +L N+Y +   W  A+ +R FM+ERGL+KE GCSWIE++  V   SSN
Sbjct: 579 GMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIELKGEVVTFSSN 630



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 144/299 (48%), Gaps = 47/299 (15%)

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+ + +V +WN ++SG +                R+ + A+A     A+         
Sbjct: 57  FDEMSERNVFTWNCMVSGLI----------------RNRMLAEARKVFDAMPV------- 93

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
                           R  V    L+  Y +CG V +A  +F  + D++++SWN++++  
Sbjct: 94  ----------------RNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGY 137

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           ARNG ++ A      +P  D +S+  +I+G  +   + +A  +  SMPSP +S  N++L+
Sbjct: 138 ARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLS 197

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GYV    +  A  LFG+MQ++    +  +++ M++G A   +    M I   +  +  + 
Sbjct: 198 GYVELGYMRAAEVLFGQMQTR----NPVSWNVMITGYARAGS----MGIAQRLFDEMPEK 249

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            ++  +A++  Y + G V+ A  +F+ +  ++ V WN M+ G+ RN  L   ++LF ++
Sbjct: 250 DVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEM 308



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 105/262 (40%), Gaps = 66/262 (25%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL- 95
           +V   TA+M  Y +  S+  A K+F ++P    V+WN+++ G+V++ +   AL LF E+ 
Sbjct: 250 DVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMP 309

Query: 96  ERSEIY--------------------------ADAYSFTSALAACGQLGSLQL------- 122
           +R +I                            DA S+ + ++     G+L L       
Sbjct: 310 DRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEGALSLLSEMIRG 369

Query: 123 ------------------------GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
                                   G  +H   +K   E   ++ + LI MY KCG + +A
Sbjct: 370 GLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEA 429

Query: 159 IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQF 214
             VF  ++ +D ++WN++IA  A +G  + A      +      PD  ++  +++  A  
Sbjct: 430 SQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHK 489

Query: 215 GDIEDAIMILSSMPSPNSSSWN 236
           G + +      SM       WN
Sbjct: 490 GYLYEGCYHFRSM----QEDWN 507



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H + +K+GF  +  V ++L+  Y K   +++A ++F  I Q   V+WN++I+ Y   
Sbjct: 395 KMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYH 454

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG-MAIHSKIVKYSLERGVVI 141
           G   +AL +F  + ++    D  +F S L+AC   G L  G     S    ++L      
Sbjct: 455 GLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDH 514

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKD--IISWNSVIAASARNGNLELA 189
            +C++D+ G+ G +  A   F   I  D    +W ++ +    +G ++L 
Sbjct: 515 YSCMVDLLGRSGFIHQAYD-FTRRIPSDHRTTAWETLFSVCNSHGEIQLG 563


>gi|125548358|gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indica Group]
          Length = 655

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 156/532 (29%), Positives = 273/532 (51%), Gaps = 53/532 (9%)

Query: 43  ALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL------- 95
           AL+  Y +   +A+A ++F  IP  +VVSWN+++SGY ++G  ++A  LF  +       
Sbjct: 101 ALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVS 160

Query: 96  ---------------ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE-RGV 139
                          E  E++    S  +++      G ++LG    ++++   ++ R  
Sbjct: 161 WLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNP 220

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
           V  N +I  Y + GS+  A  +F EM +KD++S  +++    +NG+++ A+     +P+ 
Sbjct: 221 VSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHR 280

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN----------RVP 249
           DT+++N +++G  +   ++DA+ + S MP  +  SW++IL GYV +           R P
Sbjct: 281 DTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWHAILQGYVQQGDMDSANVWFPRAP 340

Query: 250 E-----------------ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
                             AL L  EM    +  D+ T S ++S  A L +L  G ++H  
Sbjct: 341 NKDAISWNTLISGYKDEGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLW 400

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
            IK G +   +V S+L+ MYSKCG +  A  +F  + +++ VTWNAMI  YA +G   + 
Sbjct: 401 AIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEA 460

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412
           +++F+ + T    +PD  TFL++L+AC+H    ++    +F SM +D+ + P  +H   M
Sbjct: 461 LKVFDMM-TKAGFRPDHATFLSILSACAHKGYLYEGCY-HFRSMQEDWNLVPRSDHYSCM 518

Query: 413 IRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472
           + L+G+ G + +A    R +        W  L SA  +  ++ +  I A  V+K      
Sbjct: 519 VDLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFSACNSHGEIQLGEIIARNVLKARPSDG 578

Query: 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE-NVAAHSSN 523
            +Y +L N+Y +   W  A+ +R FM+ERGL+KE GCSWIE++  V   SSN
Sbjct: 579 GMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIELKGEVVTFSSN 630



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 144/299 (48%), Gaps = 47/299 (15%)

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+ + +V +WN ++SG +                R+ + A+A     A+         
Sbjct: 57  FDEMSERNVFTWNCMVSGLI----------------RNRMLAEARKVFDAMPV------- 93

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
                           R  V    L+  Y +CG V +A  +F  + D++++SWN++++  
Sbjct: 94  ----------------RNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGY 137

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
           ARNG ++ A      +P  D +S+  +I+G  +   + +A  +  SMPSP +S  N++L+
Sbjct: 138 ARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLS 197

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GYV    +  A  LFG+MQ++    +  +++ M++G A   +    M I   +  +  + 
Sbjct: 198 GYVELGYMRAAEVLFGQMQTR----NPVSWNVMITGYARAGS----MGIAQRLFDEMPEK 249

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            ++  +A++  Y + G V+ A  +F+ +  ++ V WN M+ G+ RN  L   ++LF ++
Sbjct: 250 DVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEM 308



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 4/170 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H + +K+GF  +  V ++L+  Y K   +++A ++F  I Q   V+WN++I+ Y   
Sbjct: 395 KMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYH 454

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG-MAIHSKIVKYSLERGVVI 141
           G   +AL +F  + ++    D  +F S L+AC   G L  G     S    ++L      
Sbjct: 455 GLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDH 514

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKD--IISWNSVIAASARNGNLELA 189
            +C++D+ G+ G +  A   F   I  D    +W ++ +A   +G ++L 
Sbjct: 515 YSCMVDLLGRSGFIHQAYD-FTRRIPSDHRTTAWETLFSACNSHGEIQLG 563



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 105/262 (40%), Gaps = 66/262 (25%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL- 95
           +V   TA+M  Y +  S+  A K+F ++P    V+WN+++ G+V++ +   AL LF E+ 
Sbjct: 250 DVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMP 309

Query: 96  ERSEIY--------------------------ADAYSFTSALAACGQLGSLQL------- 122
           +R +I                            DA S+ + ++     G+L L       
Sbjct: 310 DRDQISWHAILQGYVQQGDMDSANVWFPRAPNKDAISWNTLISGYKDEGALSLLSEMIRG 369

Query: 123 ------------------------GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
                                   G  +H   +K   E   ++ + LI MY KCG + +A
Sbjct: 370 GLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEA 429

Query: 159 IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQF 214
             VF  ++ +D ++WN++IA  A +G  + A      +      PD  ++  +++  A  
Sbjct: 430 SQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHK 489

Query: 215 GDIEDAIMILSSMPSPNSSSWN 236
           G + +      SM       WN
Sbjct: 490 GYLYEGCYHFRSM----QEDWN 507


>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 555

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 152/526 (28%), Positives = 268/526 (50%), Gaps = 39/526 (7%)

Query: 29  ILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP-QPSVVSWNSLISGYVQSGKYRK 87
           +L+    +NV + T  +        +  A K+F + P +      NS+I  Y+++  Y  
Sbjct: 1   MLRHAIETNVQIFTKFLVISASAVGIGYARKLFDQRPHREDSFLCNSMIKAYLETRHYND 60

Query: 88  ALNLFVELERSEIYA-DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
           +   + +L +    A D ++FT+   +C     +  G+ +HS+I +      + ++  ++
Sbjct: 61  SFAFYRDLRKETCLAPDNFTFTTMTKSCTLSMCVYQGLQLHSQIWRSGFCADMYVSTGVV 120

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-PDTISYN 205
           DMY K G +  A  VF EM  +  +SW ++I    R G L+LA     ++P   D + YN
Sbjct: 121 DMYAKFGKMGCARNVFDEMPQRSEVSWTALICGYVRFGELDLASKLFDQMPQVKDVVIYN 180

Query: 206 EVINGIAQFGD-------------------------------IEDAIMILSSMPSPNSSS 234
            +++G  + GD                               I+ A  +  +MP  N  S
Sbjct: 181 AMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPERNLVS 240

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQ-SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           WN+++ GY    +  EA+ LF EMQ +  +  D+ T  ++L  I+   AL+ G   H  V
Sbjct: 241 WNTMIGGYCQNKQPQEAIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFV 300

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
            ++ LD  + V +A+LDMYSKCG++E A  +F  +  K + +WNAMI GYA NG+    +
Sbjct: 301 QRKNLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAAL 360

Query: 354 ELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMI 413
           +LF  L   ++ +PD +T L V++AC+H  +  ++  ++F+ M K +G+   +EH   M+
Sbjct: 361 DLF--LTMAKEEKPDEITMLAVISACNHGGL-VEEGRKWFQMMRK-FGLNAKIEHYGCMV 416

Query: 414 RLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY 473
            L+G+ G + +A+ +I  + F   G++  + LSA G   D++ A     + ++LE  +D 
Sbjct: 417 DLLGRAGNLKQAEHLITNMPFKPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDG 476

Query: 474 VYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAA 519
            YV+L NLY +   WD   +++N MR+   +KE GCS IE+  + +
Sbjct: 477 NYVLLRNLYAADKRWDDFGMVKNMMRKNEAKKEVGCSLIEINYIVS 522



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 99/196 (50%), Gaps = 2/196 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  +  +L A SD G  +  +  HC++ +      V V TA++  Y K   +  A ++
Sbjct: 272 PDDVTILSVLPAISDTGALSLGEWCHCFVQRKNLDKKVKVCTAILDMYSKCGEIEKAKRI 331

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+  V SWN++I GY  +G    AL+LF+ + + E   D  +  + ++AC   G +
Sbjct: 332 FDEMPEKQVASWNAMIHGYALNGNAHAALDLFLTMAKEE-KPDEITMLAVISACNHGGLV 390

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIAA 179
           + G      + K+ L   +    C++D+ G+ G+++ A  +   M  K + I  +S ++A
Sbjct: 391 EEGRKWFQMMRKFGLNAKIEHYGCMVDLLGRAGNLKQAEHLITNMPFKPNGIILSSFLSA 450

Query: 180 SARNGNLELAFGFLHR 195
             +  ++E A   L +
Sbjct: 451 CGQYKDIERAERILKK 466


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 145/525 (27%), Positives = 265/525 (50%), Gaps = 43/525 (8%)

Query: 33  GFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF 92
           GF  ++ +S  L+  Y K   L  A  +F  + + +VVSW +L+ G++Q+G   ++L LF
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 93  VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC 152
            ++  S +  + ++F++ L ACG L  L +G  IH   VK   +   V+ N +IDMY KC
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKC 121

Query: 153 GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP----DTISYNEVI 208
           G + +A  +F  M  +++ISWN++IA     G  E A     ++       D  ++   +
Sbjct: 122 GRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTL 181

Query: 209 NGIAQFGDIED-------------------------------------AIMILSSMPSPN 231
              +  G I++                                     A  + S +   +
Sbjct: 182 KACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKH 241

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SW +++ GY     + E++ LF +++   + +D +  S+M+   A  + +  G  +H+
Sbjct: 242 VISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHA 301

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
             IK      I V +++LDMY KCG +  A+ +F  +  +N+++W  MITGY ++G   +
Sbjct: 302 FAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKE 361

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411
            I LF++++ +   +PD VT+L VL  CSH+ +  +K  EYF  +   +GIK  VEH   
Sbjct: 362 AIRLFDEMQ-LDSTEPDDVTYLAVLLGCSHSGL-VEKGQEYFSRLCSYHGIKARVEHYAC 419

Query: 412 MIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471
           M+ L+G+ G +  A+ ++  +   +   +W+ LLSA     DL++ +     +++L+ ++
Sbjct: 420 MVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSEN 479

Query: 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
              YVM+ N+Y   G W     +R  ++ + L+KEAG SW+E++ 
Sbjct: 480 PVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDK 524



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 208/450 (46%), Gaps = 53/450 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++     L+A   L      +Q+H   +K+GF     V  +++  Y K   + +A  M
Sbjct: 71  PNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACM 130

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P  +++SWN++I+GY  +G   KAL LF +++    + D ++FTS L AC  LG++
Sbjct: 131 FEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAI 190

Query: 121 QLGMAIHSKIVK----YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           + G  IH+ ++     YS+   V  A  LID+Y KCG +  A  VF  + +K +ISW ++
Sbjct: 191 KEGNQIHAFLITGGFLYSVNTAV--AGALIDLYVKCGKLFMARRVFSHIEEKHVISWTAL 248

Query: 177 IAASARNGNL--------------------------------------ELAFGFLHRLPN 198
           I   A+ GNL                                      +    F  ++P+
Sbjct: 249 ILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPS 308

Query: 199 PDTISY-NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
              IS  N +++   + G I +A  + S MP+ N  SW  ++TGY       EA+ LF E
Sbjct: 309 GVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDE 368

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-QGLDASIVVASALLDMYSKCG 316
           MQ      D+ T+  +L G +    +  G    S +    G+ A +   + ++D+  + G
Sbjct: 369 MQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAG 428

Query: 317 QVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN- 374
           +++ A ++  S+    N+  W  +++    +GDL    EL +++  +  L+ DS   +N 
Sbjct: 429 RLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDL----ELGKEVGGIL-LRLDSENPVNY 483

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           V+ +  + D  + K  E    + K   +K 
Sbjct: 484 VMMSNIYADAGYWKECERIRELVKSKKLKK 513



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 100/193 (51%), Gaps = 8/193 (4%)

Query: 188 LAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
           + FGF       D +  N++I    + G +  A  +   M   N  SW +++ G++    
Sbjct: 1   MGFGF-------DLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGN 53

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307
             E+L LF +M    V  +++TFST L     L+ L  G  IH   +K G D   VV ++
Sbjct: 54  PLESLLLFSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNS 113

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           ++DMYSKCG++  A  MF  +  +NL++WNAMI GY   G   K + LF++++ V     
Sbjct: 114 IIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGF-L 172

Query: 368 DSVTFLNVLAACS 380
           D  TF + L ACS
Sbjct: 173 DEFTFTSTLKACS 185


>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 1441

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 167/558 (29%), Positives = 287/558 (51%), Gaps = 51/558 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+    +  A + L +  +  QLH  ++K+ F SN+FV+ AL+  Y K  +L +A K 
Sbjct: 408 PDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQ 467

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     VSWN++I GYVQ     +A  +F  +  + +  D  S  S ++AC  +  L
Sbjct: 468 FELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQEL 527

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G   H  +VK  L+      + LIDMY KCG V  A  VF  M  ++++S N++IA  
Sbjct: 528 KRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGY 587

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVING----------------IAQFGDIEDA 220
              G+LE A      +      P  +++  +++G                + ++G +  +
Sbjct: 588 TM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSS 646

Query: 221 IMI--------------------LSSMPSPNS-SSWNSILTGYVNRNRVPEALHLFGEMQ 259
            M+                     S +  P     W ++++GY  +N   +AL  +  M+
Sbjct: 647 EMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMR 706

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           S ++  D+  F+++L   AG+S+L  G  IHS +   G +   V  S+L+DMY+KCG V+
Sbjct: 707 SDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVK 766

Query: 320 IADSMFRSLCRK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            +  +FR + R+ N+++WN+MI G A+NG   + +E+F+Q++  + + PD VTFL VL+A
Sbjct: 767 GSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQ-QSIIPDEVTFLGVLSA 825

Query: 379 CSHTDIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           CSH      +VSE    F+ M  +Y + P V+H   M+ ++G+ G +  A+  I +LG  
Sbjct: 826 CSHA----GRVSEGRKVFDLMVNNYKLLPRVDHLGCMVDILGRWGFLNEAEEFINKLGCK 881

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
           +  ++W  LL A     D    + +A ++++L+  S   YV+L ++Y    NW  A  +R
Sbjct: 882 ADPMLWSTLLGACRKHGDEVRGKRAADKLMELKPQSSSSYVLLSSIYAESENWSGAVSLR 941

Query: 496 NFMRERGLRKEAGCSWIE 513
             M+ +G++K  G SWIE
Sbjct: 942 REMKLKGVKKLPGYSWIE 959



 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 188/360 (52%), Gaps = 5/360 (1%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H   LK G      +   ++  Y K  ++  A K F  + +  V +WNS++S Y+  G 
Sbjct: 63  IHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGL 122

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           +   +  FV +   E+  + ++F   L+AC  L  +  G  +H  + K            
Sbjct: 123 FATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGG 182

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PD 200
           LIDMY KC  + DA  VF   ++ D +SW ++IA   R+G    A     R+      PD
Sbjct: 183 LIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPD 242

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            I+   V+N     G + DA  + + +P+PN  +WN +++G+  R    EA+  F E++ 
Sbjct: 243 QITLVTVVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKK 302

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             +     +  ++LS IA LS L +G ++H+   K+GLD ++ V SAL++MY+KC +++ 
Sbjct: 303 TGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDA 362

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F SL  +N+V WNAM+ G+A+NG   +V+E F  +K     QPD  TF ++ +AC+
Sbjct: 363 AKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKR-HGPQPDEFTFTSIFSACA 421



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 226/478 (47%), Gaps = 45/478 (9%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           +L A + L    Y   +H    K G   NV+V +AL+  Y K + +  A ++F  + + +
Sbjct: 315 VLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERN 374

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           +V WN+++ G+ Q+G  ++ +  F  ++R     D ++FTS  +AC  L  L  G  +H+
Sbjct: 375 IVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHT 434

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
            ++K      + +AN L+DMY K G++++A   F  M   D +SWN++I    +    + 
Sbjct: 435 VMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDE 494

Query: 189 AFGFLHRLPN----PDTISYNEVINGIAQFGDIED------------------------- 219
           AF    R+ +    PD +S   +++  A   +++                          
Sbjct: 495 AFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLID 554

Query: 220 ----------AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
                     A  +  SMPS N  S N+++ GY     + EA+HLF E+Q   +   E T
Sbjct: 555 MYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYT-MGHLEEAIHLFQEIQMVGLKPTEVT 613

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           F+ +L G  G   L  G  IH  V+K G L +S +V  +LL +Y    +   ++++F  L
Sbjct: 614 FAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSEL 673

Query: 329 -CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387
              K LV W A+I+GYA+     K ++ ++ +++  ++ PD   F +VL AC+   +   
Sbjct: 674 QYPKGLVVWTALISGYAQQNHHEKALQFYQHMRS-DNILPDQAAFASVLRACA--GMSSL 730

Query: 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
           +  +   S+    G       C S+I +  + G+V  + ++ RE+   +  + W +++
Sbjct: 731 QNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMI 788



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 187/392 (47%), Gaps = 15/392 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+    +L A S L    + +Q+HC + K+GF    F    L+  Y K   L DA  +
Sbjct: 140 PNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLV 199

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F        VSW +LI+GYV+ G   +A+ +F  ++R     D  +  + + A   LG L
Sbjct: 200 FDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRL 259

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII----SWNSV 176
                + ++I   +    VV  N +I  + K G  E+AI  F E+    +     S  SV
Sbjct: 260 ADARKLFTQIPNPN----VVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSV 315

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYN-----EVINGIAQFGDIEDAIMILSSMPSPN 231
           ++A A    L      +H     + +  N      ++N  A+   ++ A  + +S+   N
Sbjct: 316 LSAIASLSMLNYG-SMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERN 374

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              WN++L G+       E +  F  M+      DE+TF+++ S  A L  L +G  +H+
Sbjct: 375 IVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHT 434

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
            +IK    +++ VA+AL+DMY+K G ++ A   F  +   + V+WNA+I GY +     +
Sbjct: 435 VMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDE 494

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
              +F ++ +   + PD V+  ++++AC++  
Sbjct: 495 AFFMFRRMVS-NGVLPDEVSLASIVSACANVQ 525



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 63/110 (57%), Gaps = 2/110 (1%)

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
           L AL+   +IHS  +K G+    ++ + ++D+Y KCG V+ A   F  L +K++  WN++
Sbjct: 54  LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSV 113

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIPFDK 388
           ++ Y  +G    V++ F  +    +++P+  TF  VL+ACS   D+ F +
Sbjct: 114 LSMYLDHGLFATVVQSFVCMWN-HEVRPNEFTFAMVLSACSGLQDVNFGR 162


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 165/555 (29%), Positives = 286/555 (51%), Gaps = 45/555 (8%)

Query: 2    NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
            N++VL  +L+    +        +H    K G   N FV +AL+  Y     ++DA ++F
Sbjct: 530  NQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVF 589

Query: 62   VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
              I     V+W +++S Y ++      L +F ++  +    + ++ TS L A   L S+ 
Sbjct: 590  DGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVV 649

Query: 122  LGMAIHSKIVK--YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            LG  IH+  VK  Y  ER V  A  L+DMY KCG++EDA   F  + + D+I W+ +I+ 
Sbjct: 650  LGKGIHACSVKTLYDTERHVYGA--LLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISR 707

Query: 180  SARNGNLELAFGFLHRL------PNPDTISY----------------------------- 204
             A+    E AF    R+      PN  ++S                              
Sbjct: 708  YAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESE 767

Query: 205  ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                N +I+  A+  D+E ++ I SS+   N  SWN+I+ GY        AL +F EM++
Sbjct: 768  LFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRA 827

Query: 261  KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
              VP  + T+S++L   A  +++     +H  + K   ++  +V+++L+D Y+KCG +  
Sbjct: 828  ASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRD 887

Query: 321  ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            A  +F +L   +LV+WNA+I+GYA +G      ELF+ +     ++ + +TF+ +L+ C 
Sbjct: 888  AREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSK-NSIKANDITFVALLSVCG 946

Query: 381  HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
             T +    +S  F+SM  D+GI+P++EH   ++RL+G+ G +  A   I ++      +V
Sbjct: 947  STGLVSQGLS-LFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMV 1005

Query: 441  WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
            WRALLS+     ++++ R SA +V+++E   +  YV+L N+Y++ G+ D  +  R  MR 
Sbjct: 1006 WRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRN 1065

Query: 501  RGLRKEAGCSWIEVE 515
             G+RKE G SW+E++
Sbjct: 1066 IGVRKEPGLSWVEIK 1080



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 193/401 (48%), Gaps = 42/401 (10%)

Query: 23  QQLHCYILKSGFLS--NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           + +H ++++SG L+  ++F +  L+  Y K+     AH++F  +P+ ++VS+ +L+ G+ 
Sbjct: 448 RAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHA 507

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
             G++ +A  LF  L       + +  T+ L     + +L L   +H+   K   +R   
Sbjct: 508 LRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAF 567

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP--- 197
           + + LID Y  CG V DA  VF  ++ KD ++W ++++  + N   E       ++    
Sbjct: 568 VGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAV 627

Query: 198 ---NPDTIS---------------------------------YNEVINGIAQFGDIEDAI 221
              NP  ++                                 Y  +++  A+ G+IEDA 
Sbjct: 628 SKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDAR 687

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           +    + + +   W+ +++ Y   N+  +A  LF  M    V  +E++ S++L   A + 
Sbjct: 688 LAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMP 747

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  IH+  IK G ++ + V +AL+D+Y+KC  +E +  +F SL   N V+WN +I 
Sbjct: 748 LLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIV 807

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           GY+++G     + +F +++    +    VT+ +VL AC+ T
Sbjct: 808 GYSKSGFGEAALSVFREMRAA-SVPSTQVTYSSVLRACAST 847



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 153/320 (47%), Gaps = 27/320 (8%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
            PNE+ L  +L+A +++      +Q+H + +K G  S +FV  AL+  Y K + +  + ++
Sbjct: 731  PNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEI 790

Query: 61   FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            F  +   + VSWN++I GY +SG    AL++F E+  + + +   +++S L AC    S+
Sbjct: 791  FSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASI 850

Query: 121  QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
                 +H  I K +     +++N LID Y KCG + DA  +F  + + D++SWN++I+  
Sbjct: 851  NHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGY 910

Query: 181  ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
            A +G   +A      +       + I++  +++     G +   + +  SM       P+
Sbjct: 911  AVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPS 970

Query: 232  SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
               +  I+       R+ +AL+  G++ S                    SA+ W  L+ S
Sbjct: 971  MEHYTCIVRLLGRAGRLNDALNFIGDIPSAP------------------SAMVWRALLSS 1012

Query: 292  CVIKQGLDASIVVASALLDM 311
            C++ + ++     A  +L++
Sbjct: 1013 CIVHKNVELGRFSAEKVLEI 1032



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 147/325 (45%), Gaps = 46/325 (14%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKY-SLER-GVVIANCLIDMYGKCGSVEDAIG 160
           D+Y++   L  C   G  + G A+H  +V+   L R  +  AN L++MY K G    A  
Sbjct: 427 DSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHR 486

Query: 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP-------------------NPDT 201
           VF  + +++++S+ +++   A  G  E A     RL                      DT
Sbjct: 487 VFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDT 546

Query: 202 ISY--------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTG 241
           +                      + +I+  +  G + DA  +   +   ++ +W ++++ 
Sbjct: 547 LGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSC 606

Query: 242 YVNRNRVPE-ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           Y + N  PE  L +F +M+     ++ +  +++L     LS++  G  IH+C +K   D 
Sbjct: 607 Y-SENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDT 665

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
              V  ALLDMY+KCG +E A   F  +   +++ W+ MI+ YA+     +  ELF  ++
Sbjct: 666 ERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELF--IR 723

Query: 361 TVR-DLQPDSVTFLNVLAACSHTDI 384
            +R  + P+  +  +VL AC++  +
Sbjct: 724 MMRSSVSPNEFSLSSVLQACANMPL 748



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA--SIVVASALLDMYSKCGQVEIAD 322
           +D Y ++ +L G         G  +H  V++ G  A   +  A+ LL+MY+K G    A 
Sbjct: 426 VDSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAH 485

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
            +F  L  +N+V++  ++ G+A  G+  +   LF++L+
Sbjct: 486 RVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLR 523


>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
 gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
          Length = 705

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 159/545 (29%), Positives = 277/545 (50%), Gaps = 66/545 (12%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           LLRASS+LG    C+ LHC++++ GF +++ V   L+G Y K+  + DA K+F ++   S
Sbjct: 145 LLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIKS 204

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS------------------- 109
           VVSWN+++SGY  +     A  +F ++E   +  +  ++TS                   
Sbjct: 205 VVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLFC 264

Query: 110 ----------------ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
                            L+ C  L +L  G  IH  +VK      +   N LI +YGK G
Sbjct: 265 KMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGG 324

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQ 213
            V DA  +F EM  K+++SWN++I++ A +G  + A   L +L   +  +Y E+      
Sbjct: 325 GVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDKALELLSQLEKME--AYPEM------ 376

Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
                           PN  +W++I+ G+ ++    E+L +F +MQ  +V  +  T +++
Sbjct: 377 ---------------KPNVITWSAIICGFASKGLGEESLEVFRKMQLANVKANSVTIASV 421

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           LS  A L+AL  G  +H  VI+  +D +++V + L++MY+KCG  +    +F  L  ++ 
Sbjct: 422 LSICAMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLENRDS 481

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE-- 391
           ++WN+MI GY  +G     +  F  +      +PD VTF+  L+ACSH  +    V+E  
Sbjct: 482 ISWNSMIAGYGTHGLGKDALATFNHM-IKSGYRPDGVTFIAALSACSHAGL----VAEGH 536

Query: 392 -YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450
             F  M +++ I+P +EH   M+ L+G+ G V  A  +I+ +       +W +LL++   
Sbjct: 537 WLFSQMRQNFKIEPEIEHYACMVDLLGRAGLVEEASNIIKGMPMEPNAYIWSSLLNSCRM 596

Query: 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCS 510
             D D+A  +AA++  L       +++L N++ +   W+ ++ +R   R +GL+K  G S
Sbjct: 597 HKDTDLAEEAAAKISNLNSKITGSHMLLSNIFAASCRWEDSARVRISARAKGLKKVPGWS 656

Query: 511 WIEVE 515
           WIEV+
Sbjct: 657 WIEVK 661



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 183/371 (49%), Gaps = 36/371 (9%)

Query: 8   HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP-- 65
           HLLR  + +    + +Q+H   + +G   + FVS  L+  Y +   ++DA K+F   P  
Sbjct: 43  HLLRQCNGI---QHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFE 99

Query: 66  -QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
              + + WNS+I   V  G   +AL L+ ++    +  D ++F   L A   LG+  +  
Sbjct: 100 CYSNFLLWNSIIRANVYHGYCIEALQLYGKMRNYGVLGDGFTFPLLLRASSNLGAFNMCK 159

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
            +H  +V++  +  + + N LI MY K   ++DA  VF +M  K ++SWN++++  A N 
Sbjct: 160 NLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAYNY 219

Query: 185 NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
           ++  A    H++           + G+                  PN  +W S+L+ +  
Sbjct: 220 DVNGASRMFHQME----------LEGV-----------------EPNPVTWTSLLSSHAR 252

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV 304
              + E + LF +M+ K V       + +LS  A L+ L  G +IH  ++K G +  +  
Sbjct: 253 CGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFA 312

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR- 363
            +AL+ +Y K G V  A+ +F  +  KNLV+WNA+I+ +A +G   K +EL  QL+ +  
Sbjct: 313 KNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDKALELLSQLEKMEA 372

Query: 364 --DLQPDSVTF 372
             +++P+ +T+
Sbjct: 373 YPEMKPNVITW 383



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 169/379 (44%), Gaps = 67/379 (17%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P   +L  +L   +DL      Q +H Y++K GF   +F   AL+  Y K   + DA K+
Sbjct: 273 PTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKL 332

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY------------------- 101
           F E+   ++VSWN+LIS + +SG Y KAL L  +LE+ E Y                   
Sbjct: 333 FHEMKVKNLVSWNALISSFAESGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFAS 392

Query: 102 --------------------ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
                               A++ +  S L+ C  L +L LG  +H  +++  ++  V++
Sbjct: 393 KGLGEESLEVFRKMQLANVKANSVTIASVLSICAMLAALNLGREMHGHVIRARMDDNVLV 452

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG-FLHRLPN-- 198
            N LI+MY KCGS +    VF ++ ++D ISWNS+IA    +G  + A   F H + +  
Sbjct: 453 GNGLINMYTKCGSFKPGFMVFEKLENRDSISWNSMIAGYGTHGLGKDALATFNHMIKSGY 512

Query: 199 -PDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PNSSSWNSILTGYVNRNRVPEAL 252
            PD +++   ++  +  G + +   + S M       P    +  ++        V EA 
Sbjct: 513 RPDGVTFIAALSACSHAGLVAEGHWLFSQMRQNFKIEPEIEHYACMVDLLGRAGLVEEAS 572

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
           ++      K +PM+              +A  W  L++SC + +  D +   A+ + ++ 
Sbjct: 573 NII-----KGMPMEP-------------NAYIWSSLLNSCRMHKDTDLAEEAAAKISNLN 614

Query: 313 SK-CGQVEIADSMFRSLCR 330
           SK  G   +  ++F + CR
Sbjct: 615 SKITGSHMLLSNIFAASCR 633



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 105/202 (51%), Gaps = 12/202 (5%)

Query: 212 AQFGDIEDAIMILSSMPSPNSSS---WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268
           +++G + DA  +  S P    S+   WNSI+   V      EAL L+G+M++  V  D +
Sbjct: 81  SRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQLYGKMRNYGVLGDGF 140

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           TF  +L   + L A      +H  V++ G    + V + L+ MY+K  +++ A  +F  +
Sbjct: 141 TFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKM 200

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL---AACSHTDIP 385
             K++V+WN M++GYA N D+     +F Q++ +  ++P+ VT+ ++L   A C H    
Sbjct: 201 RIKSVVSWNTMVSGYAYNYDVNGASRMFHQME-LEGVEPNPVTWTSLLSSHARCGH---- 255

Query: 386 FDKVSEYFESMTKDYGIKPTVE 407
            ++    F  M +  G+ PT E
Sbjct: 256 LEETMVLFCKM-RMKGVGPTAE 276


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 151/498 (30%), Positives = 263/498 (52%), Gaps = 6/498 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  + +    S+  V T  +     +NS+  A  +F      +   +N+LI G  ++
Sbjct: 59  RQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAEN 118

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            ++  +++ FV + + +I  D  +F   L +   L +  +G A+H  I+K+ LE    + 
Sbjct: 119 SRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVR 178

Query: 143 NCLIDMYGKCGSVEDAIGVFGE----MIDKDIISWNSVIAASARNGNLELAFGFLHRLPN 198
             L+DMY K   +  A+ VF E    + +  ++ WN +I    R G+L  A      +P 
Sbjct: 179 VSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPK 238

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
            DT S+N +ING  + GD+  A  +   MP  N  SW +++ G+       +AL  F  M
Sbjct: 239 KDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCM 298

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
             +    ++YT  + LS  A + AL  G+ IH+ +   G   ++V+ +AL+DMY+KCG +
Sbjct: 299 LEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNI 358

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           E A+ +F     K L+ W+ MI G+A +G   K ++ FE +K     +PDSV FL VL A
Sbjct: 359 EHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFT-GTKPDSVVFLAVLNA 417

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH+    ++  ++F++M + Y I+P+++H   ++ ++G+ G +  A + IR +      
Sbjct: 418 CSHSG-QVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDF 476

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
           VVW AL  A     ++++A +++ ++++LE      YV L N Y S G WD A  +R  M
Sbjct: 477 VVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSM 536

Query: 499 RERGLRKEAGCSWIEVEN 516
           R+ G  K+ G S+IEV++
Sbjct: 537 RDHGAHKDPGWSFIEVDH 554



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 111/232 (47%), Gaps = 5/232 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+Y +   L A + +G      ++H Y+  +GF  N+ + TAL+  Y K  ++  A K+
Sbjct: 305 PNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKV 364

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E  +  ++ W+ +I G+   G +RKAL  F  ++ +    D+  F + L AC   G +
Sbjct: 365 FHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQV 424

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G+     + + Y +E  +     ++DM G+ G +++A+     M I  D + W ++  
Sbjct: 425 NEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFC 484

Query: 179 ASARNGNL---ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           A   + N+   ELA   L +L      SY  + N  A  G  +DA  +  SM
Sbjct: 485 ACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSM 536



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 168/390 (43%), Gaps = 26/390 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      +L++++ L      + LHC ILK G   + FV  +L+  Y K+  L  A K+
Sbjct: 138 PDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKV 197

Query: 61  FVEIPQP----SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           F E P+     SV+ WN LI GY + G   KA  LF  + +     D  S+ S +    +
Sbjct: 198 FDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKK----DTGSWNSLINGFMK 253

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK----DIIS 172
           +G +     +  K+     E+ VV    +++ + + G  E A+  F  M+++    +  +
Sbjct: 254 MGDMGRAKELFVKMP----EKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYT 309

Query: 173 WNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVI-----NGIAQFGDIEDAIMILSSM 227
             S ++A A+ G L+     +H   + +    N VI     +  A+ G+IE A  +    
Sbjct: 310 IVSALSACAKIGALDAGLR-IHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHET 368

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
                  W+ ++ G+       +AL  F  M+      D   F  +L+  +    +  G+
Sbjct: 369 KEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGL 428

Query: 288 LIHSCVIKQG--LDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYA 344
                 +++G  ++ S+   + ++DM  + G+++ A    R++    + V W A+     
Sbjct: 429 KFFDN-MRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACR 487

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
            + ++       ++L  +    P S  FL+
Sbjct: 488 THKNVEMAELASKKLLQLEPKHPGSYVFLS 517


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 156/535 (29%), Positives = 278/535 (51%), Gaps = 45/535 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           QQ+HC  LK G    + VS +L+  Y K+  +  A  +F  + +  ++SWNS+I+G  QS
Sbjct: 342 QQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQS 401

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS-LQLGMAIHSKIVKYSLERGVVI 141
               +A+ LF++L R  +  D Y+ TS L A   L   L L   IH   +K +      +
Sbjct: 402 DLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFV 461

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRL- 196
           +  LID Y +   +++A  +FG   + D+++WN++++   ++ +    LEL F  +H+  
Sbjct: 462 STALIDAYSRNRCMKEAEVLFGRN-NFDLVAWNAMMSGYTQSHDGHKTLEL-FALMHKQG 519

Query: 197 PNPDTISYNEVI-------------------------------NGI----AQFGDIEDAI 221
              D  +   V+                               +GI     + GD+  A 
Sbjct: 520 ERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQ 579

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
               S+P P+  +W ++++G +       ALH+F +M+   V  DE+T +T+    + L+
Sbjct: 580 FAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLT 639

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL  G  IH+  +K    +   V ++L+DMY+KCG ++ A  +F+ +   N+  WNAM+ 
Sbjct: 640 ALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLV 699

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G A++G+  + ++LF+Q++++  ++PD VTF+ VL+ACSH+ +   +  +Y  SM +DYG
Sbjct: 700 GLAQHGEGKEALQLFKQMESL-GIKPDKVTFIGVLSACSHSGL-VSEAYKYIRSMHRDYG 757

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           IKP +EH   +   +G+ G V  A+ +I  +   +   ++R LL+A     D +  +  A
Sbjct: 758 IKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVA 817

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++++LE      YV+L N+Y +   WD   + R  M+   ++K+ G SWIEV+N
Sbjct: 818 TKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKN 872



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 166/351 (47%), Gaps = 40/351 (11%)

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           ++S N ++SGY+ +G+Y   L  F+++  S++  D  +F   LA   +L SL LG  +H 
Sbjct: 287 IISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHC 346

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-NLE 187
             +K  L+  + ++N LI+MY K   +  A  VF  M ++D+ISWNSVIA  A++   +E
Sbjct: 347 MALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVE 406

Query: 188 LAFGFLHRLP---NPDTISYNEVINGIAQF-----------------GDIEDAIM----- 222
               F+  L     PD  +   V+   +                    ++ D+ +     
Sbjct: 407 AVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALI 466

Query: 223 -------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
                        +L    + +  +WN++++GY   +   + L LF  M  +    D++T
Sbjct: 467 DAYSRNRCMKEAEVLFGRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFT 526

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
            +T+L     L A+  G  +H+  IK G D  + V+S +LDMY KCG +  A   F S+ 
Sbjct: 527 LATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIP 586

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             + V W  +I+G   NG+  + + +F Q++ +  L PD  T   +  A S
Sbjct: 587 VPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVL-PDEFTIATLAKASS 636



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 177/360 (49%), Gaps = 25/360 (6%)

Query: 39  FVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK-----YRKALNLFV 93
           F+   L+  Y K  SL  A ++F ++P+  +VSWNS+++ Y QS +      ++A  LF 
Sbjct: 82  FLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFR 141

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
            L +  +Y    + +  L  C   G +    + H    K  L+    +A  L+++Y K G
Sbjct: 142 ILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFG 201

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNG------NLELAFGFLHRLPNPDTISYNEV 207
            V++   +F EM  +D++ WN ++ A    G      +L  AF      PN  T+     
Sbjct: 202 KVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSR 261

Query: 208 ING-------IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
           I+G       +  F +  DA  +   +      S N IL+GY++  +    L  F +M  
Sbjct: 262 ISGDDSEAGQVKSFENGNDASAVSEII------SRNKILSGYLHAGQYSALLKCFMDMVE 315

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            D+  D+ TF  +L+    L +L  G  +H   +K GLD  + V+++L++MY K  ++ +
Sbjct: 316 SDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGL 375

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A ++F ++  ++L++WN++I G A++    + + LF QL     L+PD  T  +VL A S
Sbjct: 376 ARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRC-GLKPDHYTMTSVLKAAS 434



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 170/381 (44%), Gaps = 30/381 (7%)

Query: 17  GWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLI 76
           G+    +  H Y  K G   + FV+ AL+  Y K   + +   +F E+P   VV WN ++
Sbjct: 166 GYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLML 225

Query: 77  SGYVQSGKYRKALNLFVELERSEIYADAYSF------TSALAACGQLGSLQLGMAIHSKI 130
             Y++ G   +A++L      S ++ +  +       +   +  GQ+ S + G       
Sbjct: 226 KAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGN------ 279

Query: 131 VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI----ISWNSVIAASARNGNL 186
              S    ++  N ++  Y   G     +  F +M++ D+    +++  V+A + R  +L
Sbjct: 280 -DASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSL 338

Query: 187 ELA-----FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTG 241
            L            L    T+S N +IN   +   I  A  + ++M   +  SWNS++ G
Sbjct: 339 ALGQQVHCMALKLGLDLMLTVS-NSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAG 397

Query: 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL-SALTWGMLIHSCVIKQGLDA 300
               +   EA+ LF ++    +  D YT +++L   + L   L+    IH   IK    A
Sbjct: 398 IAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVA 457

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKN--LVTWNAMITGYARNGDLTKVIELFEQ 358
              V++AL+D YS+   ++ A+ +F    R N  LV WNAM++GY ++ D  K +ELF  
Sbjct: 458 DSFVSTALIDAYSRNRCMKEAEVLFG---RNNFDLVAWNAMMSGYTQSHDGHKTLELF-A 513

Query: 359 LKTVRDLQPDSVTFLNVLAAC 379
           L   +  + D  T   VL  C
Sbjct: 514 LMHKQGERSDDFTLATVLKTC 534



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 2/189 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+ +  L +ASS L      +Q+H   LK    S+ FV T+L+  Y K  S+ DA+ +
Sbjct: 623 PDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCL 682

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I   ++ +WN+++ G  Q G+ ++AL LF ++E   I  D  +F   L+AC   G +
Sbjct: 683 FKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLV 742

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
                 I S    Y ++  +   +CL D  G+ G V++A  +   M ++     + +++A
Sbjct: 743 SEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLA 802

Query: 179 ASARNGNLE 187
           A    G+ E
Sbjct: 803 ACRVQGDTE 811



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 87/200 (43%), Gaps = 7/200 (3%)

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR-----VPEAL 252
           NP+    N +I+  ++ G +  A  +   MP  +  SWNSIL  Y   +      V EA 
Sbjct: 78  NPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAF 137

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
            LF  ++   V     T S ML        +      H    K GLD    VA AL+++Y
Sbjct: 138 LLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIY 197

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
            K G+V+    +F  +  +++V WN M+  Y   G   + I+L     T   L P+ +T 
Sbjct: 198 LKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHT-SGLHPNEIT- 255

Query: 373 LNVLAACSHTDIPFDKVSEY 392
           L +L+  S  D    +V  +
Sbjct: 256 LRLLSRISGDDSEAGQVKSF 275



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 123/309 (39%), Gaps = 79/309 (25%)

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L LG   H++I+         + N LI MY KCGS+  A  VF +M ++D++SWNS++AA
Sbjct: 62  LMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAA 121

Query: 180 SARNG-----NLELAFGFLHRLPNPDTISYNE---------------------------- 206
            A++      N++ AF  L R+   D +  +                             
Sbjct: 122 YAQSSEGVVENVKEAF-LLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACK 180

Query: 207 ------------VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
                       ++N   +FG +++  ++   MP  +   WN +L  Y+      EA+ L
Sbjct: 181 IGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDL 240

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
                +  +  +E T   +LS I+G                                 S+
Sbjct: 241 SSAFHTSGLHPNEITLR-LLSRISGDD-------------------------------SE 268

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
            GQV+  ++   +     +++ N +++GY   G  + +++ F  +    DL+ D VTF+ 
Sbjct: 269 AGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDM-VESDLECDQVTFIL 327

Query: 375 VLAACSHTD 383
           VLA     D
Sbjct: 328 VLATAVRLD 336



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 78/171 (45%), Gaps = 7/171 (4%)

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           S L  G   H+ ++    +    + + L+ MYSKCG +  A  +F  +  ++LV+WN+++
Sbjct: 60  SDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSIL 119

Query: 341 TGYARN--GDLTKVIELFEQLKTVRD--LQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
             YA++  G +  V E F   + +R   +    +T   +L  C H+   +   SE F   
Sbjct: 120 AAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSG--YVCASESFHGY 177

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
               G+        +++ +  + G+V   + +  E+ +    V+W  +L A
Sbjct: 178 ACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDV-VLWNLMLKA 227


>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
          Length = 749

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 153/556 (27%), Positives = 283/556 (50%), Gaps = 45/556 (8%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +++ L   +RA ++LG     +Q+H + LKS   S++ V  AL+  Y K   + D   +F
Sbjct: 134 DQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLF 193

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL--ERSEIYADAYSFTSALAACGQLGS 119
             I    ++SW S+I+G+ Q G   +AL +F E+  E S  + + + F SA  ACG +GS
Sbjct: 194 ERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSH-HPNEFHFGSAFRACGAVGS 252

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            + G  IH   +KY L+R + +   L DMY +C +++ A   F  +   D++SWNS++ A
Sbjct: 253 WEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNA 312

Query: 180 SARNGNLELAFGFLHRLPN----PDTISY------------------------------- 204
            +  G L  A      + +    PD I+                                
Sbjct: 313 YSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGD 372

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +++  A+  D+  A+ +   +   +  +WNSILT     N   E L LF  +  
Sbjct: 373 VSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNK 432

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            +  +D  + + +LS  A L        +H+   K GL    ++++ L+D Y+KCG ++ 
Sbjct: 433 SEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDD 492

Query: 321 ADSMFRSLCR-KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           A  +F  +   +++ +W+++I GYA+ G   +  +LF +++++  ++P+ VTF+ VL AC
Sbjct: 493 AMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSL-GIRPNHVTFIGVLTAC 551

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           S      ++   Y+  M  +YGI PT EHC  ++ L+ + G++  A   I ++ F    +
Sbjct: 552 SRVGF-VNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDII 610

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W+ LL+AS   +D+++ + +A  ++ ++      YV+LCN+Y + GNW+  + ++  MR
Sbjct: 611 MWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMR 670

Query: 500 ERGLRKEAGCSWIEVE 515
             G++K  G SW++++
Sbjct: 671 TSGVKKSPGKSWVKLK 686



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 172/349 (49%), Gaps = 41/349 (11%)

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
           VSW S+I+ +VQ+G+   AL LF  + RS   AD ++  SA+ AC +LG +  G  +H+ 
Sbjct: 101 VSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAH 160

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----- 184
            +K      +++ N L+ MY K G V+D   +F  + DKD+ISW S+IA  A+ G     
Sbjct: 161 ALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEA 220

Query: 185 --------------NLELAFGFLHRLPNP-DTISYNEVINGI------------------ 211
                           E  FG   R      +  Y E I+G+                  
Sbjct: 221 LQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSD 280

Query: 212 --AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
             A+  +++ A +    + +P+  SWNSI+  Y     + EAL LF EM+   +  D  T
Sbjct: 281 MYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGIT 340

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
              +L    G  AL  G LIHS ++K GLD  + V ++LL MY++C  +  A  +F  + 
Sbjct: 341 VRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIK 400

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            +++VTWN+++T  A++    +V++LF  L    +   D ++  NVL+A
Sbjct: 401 DQDVVTWNSILTACAQHNHPEEVLKLFSLLNK-SEPSLDRISLNNVLSA 448



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 176/391 (45%), Gaps = 42/391 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+      RA   +G   Y +Q+H   +K     +++V  +L   Y +  +L  A   
Sbjct: 235 PNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVA 294

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I  P +VSWNS+++ Y   G   +AL LF E+  S +  D  +    L AC    +L
Sbjct: 295 FYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDAL 354

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IHS +VK  L+  V + N L+ MY +C  +  A+ VF E+ D+D+++WNS++ A 
Sbjct: 355 YHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTAC 414

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQF---------------------- 214
           A++ + E        L    P+ D IS N V++  A+                       
Sbjct: 415 AQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDR 474

Query: 215 -------------GDIEDAIMILSSMPSPNSS-SWNSILTGYVNRNRVPEALHLFGEMQS 260
                        G ++DA+ +   M +     SW+S++ GY       EA  LF  M+S
Sbjct: 475 MLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRS 534

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQV- 318
             +  +  TF  +L+  + +  +  G   +S +  + G+  +    S ++D+ ++ G++ 
Sbjct: 535 LGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLT 594

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           E A+ + +     +++ W  ++     + D+
Sbjct: 595 EAANFIDQMPFEPDIIMWKTLLAASKMHNDM 625



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 161/389 (41%), Gaps = 70/389 (17%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYS-------LERGVVIANCLIDMYGKCGSVEDAI 159
           + + ++AC +L SL  G  +H  +V  S       L    V+ N LI MYG+        
Sbjct: 47  YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGR-------- 98

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFL-------------------------- 193
                    + +SW SVIAA  +NG    A G                            
Sbjct: 99  ---------NPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 149

Query: 194 ----------HRLPNP---DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                     H L +    D I  N ++   ++ G ++D  M+   +   +  SW SI+ 
Sbjct: 150 DVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIA 209

Query: 241 GYVNRNRVPEALHLFGEM--QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           G+  +    EAL +F EM  +    P +E+ F +       + +  +G  IH   IK  L
Sbjct: 210 GFAQQGFEMEALQVFREMIVEGSHHP-NEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRL 268

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
           D  + V  +L DMY++C  ++ A   F  +   +LV+WN+++  Y+  G L++ + LF +
Sbjct: 269 DRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSE 328

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           ++    L+PD +T   +L AC   D  +        S     G+   V  C S++ +  +
Sbjct: 329 MRD-SGLRPDGITVRGLLCACVGRDALYH--GRLIHSYLVKLGLDGDVSVCNSLLSMYAR 385

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSA 447
             ++  A  +  E+      V W ++L+A
Sbjct: 386 CSDLSSAMDVFHEIKDQDV-VTWNSILTA 413



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 119/284 (41%), Gaps = 37/284 (13%)

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
           L +M   N  SW S++  +V   R  +AL LF  M       D++   + +     L  +
Sbjct: 92  LITMYGRNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDV 151

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H+  +K    + ++V +AL+ MYSK G V+    +F  +  K+L++W ++I G+
Sbjct: 152 GTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGF 211

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A+ G   + +++F ++       P+   F +   AC           EY E +       
Sbjct: 212 AQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAV-----GSWEYGEQI------- 259

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
               H  S+              R+ R+L  G       +L      C +LD AR++   
Sbjct: 260 ----HGLSI------------KYRLDRDLYVGC------SLSDMYARCKNLDSARVA--- 294

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEA 507
             ++E      +  + N Y+  G    A V+ + MR+ GLR + 
Sbjct: 295 FYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDG 338


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 150/501 (29%), Positives = 271/501 (54%), Gaps = 10/501 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKI---NSLADAHKMFVEIPQPSVVSWNSLISGY 79
           +Q+H Y+ K+G  ++  ++  L+  +  +   ++L  A ++F+  P P V   N+LI G 
Sbjct: 22  KQVHAYVCKTGLDTDPIIAGKLL-LHSAVSVPDALDYARRLFLHFPNPDVFMHNTLIRGL 80

Query: 80  VQSGKYRKALNLFVELERSEIYA-DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
            +S   + +L  FVE+ R      D++SF   L A     SL+ G+ +H + + + L+  
Sbjct: 81  AESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTH 140

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN 198
           + +   L+ MY +CG V  A  VF EM + ++++WN+V+ A  R G+++ A    +R+P 
Sbjct: 141 LFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPF 200

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
            +  S+N ++ G  + G++E A  +   MP  +  SW++++ G+ +     EA   F E+
Sbjct: 201 RNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFREL 260

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           Q   +  +E + +  LS  A   A+ +G ++H  + K G    + V +ALLD YSKCG V
Sbjct: 261 QQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNV 320

Query: 319 EIADSMFRSLCRK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
            +A  +F  +  K ++V+W +MI G A +G   + I+LF +++    ++PD + F+++L 
Sbjct: 321 GMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEE-SGIRPDGIAFISILY 379

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           ACSH  +  +K  EYF  M   Y I+P +EH   M+ L G+ G++ +A   I  +     
Sbjct: 380 ACSHAGL-IEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPT 438

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW-DVASVMRN 496
            ++WR LL A     ++ +A      + +L+ ++   +V+L N+Y   G W DVA+V R+
Sbjct: 439 AIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRS 498

Query: 497 FMRERGLRKEAGCSWIEVENV 517
              +R + K  G S IEV+ +
Sbjct: 499 MTDQR-MNKTPGWSMIEVDKI 518



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 106/203 (52%), Gaps = 3/203 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  L   L A +D G   + + LH +I KSGFL  V V+ AL+  Y K  ++  A  +
Sbjct: 267 PNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLV 326

Query: 61  FVEIPQP-SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F  +P+  S+VSW S+I+G    G   +A+ LF E+E S I  D  +F S L AC   G 
Sbjct: 327 FERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGL 386

Query: 120 LQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
           ++ G     K+   Y++E  +    C++D+YG+ G ++ A      M +    I W +++
Sbjct: 387 IEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLL 446

Query: 178 AASARNGNLELAFGFLHRLPNPD 200
            A + +GN++LA     RL   D
Sbjct: 447 GACSIHGNVKLAERVKERLSELD 469


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 161/553 (29%), Positives = 271/553 (49%), Gaps = 45/553 (8%)

Query: 5   VLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEI 64
            +  +L+A   +G     +Q+H Y+ + G  S+V +   L+  Y K   L  A ++F  +
Sbjct: 236 TIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSM 295

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD--------------------- 103
              +  SWNS+IS Y   G    A +LF ELE S++  D                     
Sbjct: 296 ENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVL 355

Query: 104 --------------AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
                         + S TS L A  +LG L +G   H  +++   +  V +   LIDMY
Sbjct: 356 NILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMY 415

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYN 205
            K  S+  A  VF  M +++I +WNS+++  +  G  E A   L+++      PD +++N
Sbjct: 416 VKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWN 475

Query: 206 EVINGIAQFGDIEDAIMILSSMPS----PNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
            +I+G A +G  ++A+ +L    S    PN  SW ++++G        ++L  F +MQ +
Sbjct: 476 GMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQE 535

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  +  + + +L   A LS L  G  IH   I+ G    + VA+AL+DMYSK   ++ A
Sbjct: 536 GVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNA 595

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +FR +  K L +WN MI G+A  G   + I +F +++ V  + PD++TF  +L+AC +
Sbjct: 596 HKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKV-GVGPDAITFTALLSACKN 654

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           + +   +  +YF+SM  DY I P +EH C M+ L+G+ G +  A  +I  +       +W
Sbjct: 655 SGL-IGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIW 713

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL +     +L  A  +A  + KLE ++   Y+++ NLY+    W+    +R  M   
Sbjct: 714 GALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAA 773

Query: 502 GLRKEAGCSWIEV 514
           G+R     SWI++
Sbjct: 774 GVRNRQVWSWIQI 786



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 195/397 (49%), Gaps = 30/397 (7%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           ++H  ++K GF  +V++  ALM FY +   L  A+++F E+P P  + WN  I   +QS 
Sbjct: 154 EIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSE 213

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           K +K + LF +++ S + A+  +    L ACG++G+L     IH  + ++ L+  V + N
Sbjct: 214 KLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCN 273

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS 203
            LI MY K G +E A  VF  M +++  SWNS+I++ A  G L  A+   + L + D   
Sbjct: 274 PLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDM-- 331

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
                                     P+  +WN +L+G+       E L++   MQ +  
Sbjct: 332 -------------------------KPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGF 366

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             +  + +++L  I+ L  L  G   H  V++ G D  + V ++L+DMY K   +  A +
Sbjct: 367 KPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQA 426

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F ++  +N+  WN++++GY+  G     + L  Q++    ++PD VT+  +++  +   
Sbjct: 427 VFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEK-EGIKPDLVTWNGMISGYAMWG 485

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
              + ++   +  TK  G+ P V    ++I    Q G
Sbjct: 486 CGKEALAVLHQ--TKSLGLTPNVVSWTALISGSSQAG 520



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 121/224 (54%), Gaps = 5/224 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  LLRA + L      +++HC  +++GF+ +VFV+TAL+  Y K +SL +AHK+
Sbjct: 539 PNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKV 598

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I   ++ SWN +I G+   G  ++A+++F E+++  +  DA +FT+ L+AC   G +
Sbjct: 599 FRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLI 658

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G     S I  Y +   +    C++D+ G+ G +++A  +   M +  D   W +++ 
Sbjct: 659 GEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLG 718

Query: 179 ASARNGNL---ELAFGFLHRLPNPDTISYNEVINGIAQFGDIED 219
           +   + NL   E A   L +L   ++ +Y  ++N  + F   ED
Sbjct: 719 SCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWED 762



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 161/356 (45%), Gaps = 22/356 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  +L+A S+LG+    ++ H Y+L++GF  +V+V T+L+  Y K +SL  A  +
Sbjct: 368 PNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAV 427

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   ++ +WNSL+SGY   G +  AL L  ++E+  I  D  ++   ++     G  
Sbjct: 428 FDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCG 487

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +  +A+  +     L   VV    LI    + G+  D++  F +M  + ++  ++ I   
Sbjct: 488 KEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCL 547

Query: 181 AR---------NGN----LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
            R          G     L +  GF+      D      +I+  ++   +++A  +   +
Sbjct: 548 LRACASLSLLQKGKEIHCLSIRNGFIE-----DVFVATALIDMYSKSSSLKNAHKVFRRI 602

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI--AGLSALTW 285
            +   +SWN ++ G+       EA+ +F EMQ   V  D  TF+ +LS    +GL    W
Sbjct: 603 QNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGW 662

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT-WNAMI 340
                S +    +   +     ++D+  + G ++ A  +  ++  K   T W A++
Sbjct: 663 KYF-DSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALL 717



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 119/267 (44%), Gaps = 9/267 (3%)

Query: 195 RLP---NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR-NRVPE 250
           +LP   NPD  + N +I+    FGD   A M+       N   WNS +  + +    +  
Sbjct: 58  KLPQKWNPDAAAKN-LISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHI 116

Query: 251 ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLD 310
            L +F E+  K V  D   +S  L     +  +  GM IH C+IK+G D  + +  AL++
Sbjct: 117 VLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMN 176

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370
            Y +C  +E A+ +F  +     + WN  I    ++  L K +ELF +++    L+ ++ 
Sbjct: 177 FYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQ-FSFLKAETA 235

Query: 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
           T + VL AC          ++        +G+   V  C  +I +  + G++  A+R+  
Sbjct: 236 TIVRVLQACGKMGAL--NAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFD 293

Query: 431 ELGFGSYGVVWRALLSASGACSDLDVA 457
            +        W +++S+  A   L+ A
Sbjct: 294 SME-NRNTSSWNSMISSYAALGFLNDA 319


>gi|347954454|gb|AEP33727.1| chlororespiratory reduction 21 [Arabis hirsuta]
          Length = 824

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 153/526 (29%), Positives = 279/526 (53%), Gaps = 13/526 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +   L AS+++      +Q H   + +G   +  + T+++ FY K+  +  A  +
Sbjct: 264 PTRVTVSTCLSASANMRGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIDYAEMI 323

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  VV+WN LISGYV  G    A+ +   +    +  D  + ++ ++A  +  +L
Sbjct: 324 FDRMIEKDVVTWNLLISGYVHQGLVENAIYMCQLMRLENLKFDCVTLSTLMSAAARTQNL 383

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +    +++S E  +V+A+  +DMY KCGSV DA  VF   + KD+I WN+++AA 
Sbjct: 384 KLGKEVQCYCIRHSFESDIVLASTAVDMYAKCGSVVDAKKVFDSTVQKDLILWNTLLAAY 443

Query: 181 ARNG----NLELAFGF-LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PN 231
           A +G     L L +   L  +P P+ I++N +I  + + G + +A  +   M S    PN
Sbjct: 444 AESGLSGEALRLFYEMQLESVP-PNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGTFPN 502

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SW +++ G V      EA+    +MQ   +  + ++ +  LS    L++L +G  IH 
Sbjct: 503 MISWTTMMNGLVQNGCSEEAILFLRKMQESGMRPNVFSITVALSACVNLASLHFGRSIHG 562

Query: 292 CVIK-QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
            +I+ Q   +S  + ++L+DMY+KCG +  A+ +F S     L  +NAMI+ YA  G++ 
Sbjct: 563 YIIRNQQHSSSASIETSLVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVK 622

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + + L+  L+    ++PD++T  NVL+AC+H     ++  E F  M   +G+KP +EH  
Sbjct: 623 EAVALYRSLEEDVGIKPDNITITNVLSACNHAG-DINQAIEIFTDMVSKHGMKPCLEHYG 681

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL-SASGACSDLDVARISAAEVIKLEG 469
            M+ L+   GE  +A  +I E+ +     + ++L+ S        ++    ++++++ E 
Sbjct: 682 LMVDLLASAGETEKALSLIEEMPYKPDARMIQSLVASCKKQQHKSELMDYLSSQLLESEP 741

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           ++   YV + N Y   G+WD    MR  M+ +GL+K+ GCSWI+V+
Sbjct: 742 ENSGNYVRVSNAYAVEGSWDEVVKMREMMKVKGLKKKPGCSWIQVK 787



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 218/451 (48%), Gaps = 44/451 (9%)

Query: 23  QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           QQ+H  ILK+G  +  N ++ T L+ FY K ++L  A  +F ++   +V SW ++I    
Sbjct: 82  QQIHARILKNGDFYARNEYIETKLVIFYAKCDALEVAEVLFSKLRVRNVFSWAAIIGVKC 141

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + G    AL  FVE+  + I+ D +   +   ACG L   + G  +H  + K  L   V 
Sbjct: 142 RIGLVEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVF 201

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
           +A+ L DMYGKCG ++DA  VF E+ ++++++WN+++    +NG  E A   L  +    
Sbjct: 202 VASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEG 261

Query: 197 --PNPDTISY---------------------------------NEVINGIAQFGDIEDAI 221
             P   T+S                                    ++N   + G I+ A 
Sbjct: 262 VEPTRVTVSTCLSASANMRGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIDYAE 321

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           MI   M   +  +WN +++GYV++  V  A+++   M+ +++  D  T ST++S  A   
Sbjct: 322 MIFDRMIEKDVVTWNLLISGYVHQGLVENAIYMCQLMRLENLKFDCVTLSTLMSAAARTQ 381

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  +    I+   ++ IV+AS  +DMY+KCG V  A  +F S  +K+L+ WN ++ 
Sbjct: 382 NLKLGKEVQCYCIRHSFESDIVLASTAVDMYAKCGSVVDAKKVFDSTVQKDLILWNTLLA 441

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            YA +G   + + LF +++ +  + P+ +T+ N++      +   ++  E F  M +  G
Sbjct: 442 AYAESGLSGEALRLFYEMQ-LESVPPNVITW-NLIILSLLRNGQVNEAKEMFLQM-QSSG 498

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
             P +    +M+  + Q G    A   +R++
Sbjct: 499 TFPNMISWTTMMNGLVQNGCSEEAILFLRKM 529



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 109/481 (22%), Positives = 214/481 (44%), Gaps = 89/481 (18%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +V+ ++ +A   L W  + + +H Y+ K+G    VFV+++L   Y K   L DA K+
Sbjct: 163 PDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVFVASSLADMYGKCGVLDDARKV 222

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EIP+ +VV+WN+L+ GYVQ+G   +A+ L  ++ +  +     + ++ L+A   +  +
Sbjct: 223 FDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGVEPTRVTVSTCLSASANMRGI 282

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN------ 174
           + G   H+  +   LE   ++   +++ Y K G ++ A  +F  MI+KD+++WN      
Sbjct: 283 EEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIDYAEMIFDRMIEKDVVTWNLLISGY 342

Query: 175 -----------------------------SVIAASARNGNLELA-----FGFLHRLPNPD 200
                                        ++++A+AR  NL+L      +   H   + D
Sbjct: 343 VHQGLVENAIYMCQLMRLENLKFDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFES-D 401

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +  +  ++  A+ G + DA  +  S    +   WN++L  Y       EAL LF EMQ 
Sbjct: 402 IVLASTAVDMYAKCGSVVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQL 461

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           + VP +                +TW ++I S +                    + GQV  
Sbjct: 462 ESVPPN---------------VITWNLIILSLL--------------------RNGQVNE 486

Query: 321 ADSMFRSL----CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           A  MF  +       N+++W  M+ G  +NG   + I    +++    ++P+  +    L
Sbjct: 487 AKEMFLQMQSSGTFPNMISWTTMMNGLVQNGCSEEAILFLRKMQE-SGMRPNVFSITVAL 545

Query: 377 AACSH-TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           +AC +   + F +    +    + +    ++E   S++ +  + G++ +A+R+     FG
Sbjct: 546 SACVNLASLHFGRSIHGYIIRNQQHSSSASIE--TSLVDMYAKCGDINKAERV-----FG 598

Query: 436 S 436
           S
Sbjct: 599 S 599



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 14/223 (6%)

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
           +P+S+S+   ++       + EAL L  EM  +++ +    F  +L G      L  G  
Sbjct: 24  NPSSTSYFHRVSSLCKNGEIREALSLVTEMDFRNLRIGPEIFGEILQGCVYXRDLRTGQQ 83

Query: 289 IHSCVIKQG--LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR- 345
           IH+ ++K G     +  + + L+  Y+KC  +E+A+ +F  L  +N+ +W A+I    R 
Sbjct: 84  IHARILKNGDFYARNEYIETKLVIFYAKCDALEVAEVLFSKLRVRNVFSWAAIIGVKCRI 143

Query: 346 ---NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
               G L   +E+ E       + PD+    NV  AC    + + +            G+
Sbjct: 144 GLVEGALMGFVEMLEN-----GIFPDNFVVPNVCKACGA--LQWSRFGRGVHGYVAKAGL 196

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
              V    S+  + G+ G +  A+++  E+   +  V W AL+
Sbjct: 197 HDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV-VAWNALM 238


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 151/518 (29%), Positives = 262/518 (50%), Gaps = 68/518 (13%)

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE-----RSEIYADAYSFTSALAACGQ 116
           V  P P  +SW   I      G +R A++LF+ +      RS + A   S  +AL +C  
Sbjct: 7   VYTPWPPPLSWAHQIRMAAAQGHFRDAISLFLRMRACAAPRSSVPA---SLPAALKSCAA 63

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY-------------------GKCGSVED 157
           LG   LG ++H+  ++         AN L+++Y                   G   ++E 
Sbjct: 64  LGLSALGASLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALES 123

Query: 158 AIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQ 213
              VF EMI++D++SWN+++   A  G    A   + ++      PD+ + + V+   A+
Sbjct: 124 VRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAE 183

Query: 214 FGDIED-----------------------------------AIMILSSMPSPNSSSWNSI 238
             D++                                    ++ +  ++P  +   WNS+
Sbjct: 184 CADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSV 243

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           L G      V EAL +F  M    V     TFS+++     L++L +G  +H+ VI+ G 
Sbjct: 244 LAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGF 303

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
           + ++ ++S+L+DMY KCG++ IA  +F  +C  ++V+W AMI GYA +G   + + LFE+
Sbjct: 304 EDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFER 363

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           ++ + + +P+ +TFL VL ACSH  +  DK  +YF+SM+  YGI PT+EHC ++  ++G+
Sbjct: 364 ME-LGNAKPNHITFLAVLTACSHAGL-VDKGWKYFKSMSDHYGIVPTLEHCAALADILGR 421

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            GE+  A   I ++       VW  LL A     +  +A   A ++++LE  S   +V+L
Sbjct: 422 AGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVL 481

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            N+Y++ G W+ A+ +R  MR++G++K+  CSWIEV+N
Sbjct: 482 SNMYSASGRWNEAAHLRKSMRKKGMKKDPACSWIEVKN 519



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 104/423 (24%), Positives = 184/423 (43%), Gaps = 67/423 (15%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKI------------------ 51
           L++ + LG       LH   ++SG  ++ F + AL+  Y K+                  
Sbjct: 58  LKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGS 117

Query: 52  -NSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSA 110
             +L    K+F E+ +  VVSWN+L+ G  + G++ +AL L  ++ R     D+++ +S 
Sbjct: 118 STALESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSV 177

Query: 111 LAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI 170
           L    +   ++ G  +H   V+   +  V + + LIDMY  C   + ++ VF  +  +D 
Sbjct: 178 LPIFAECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDP 237

Query: 171 ISWNSVIAASARNGNLELAFGFLHRL------PNPDTIS-------------YNEVINGI 211
           I WNSV+A  A+NG++E A G   R+      P P T S             + + ++  
Sbjct: 238 ILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAY 297

Query: 212 AQFGDIEDAIMILSS--------------------MPSPNSSSWNSILTGYVNRNRVPEA 251
              G  ED + I SS                    M SP+  SW +++ GY       EA
Sbjct: 298 VIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREA 357

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
           L LF  M+  +   +  TF  +L+    AGL    W     S     G+  ++   +AL 
Sbjct: 358 LVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYF-KSMSDHYGIVPTLEHCAALA 416

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVT-WNAMITGYARNGDLTKVIELFEQL-KTVRDLQP 367
           D+  + G+++ A +    +  K   + W+ ++    R   + K   L E++ K + +L+P
Sbjct: 417 DILGRAGELDEAYNFISKMQIKPTASVWSTLL----RACRVHKNTMLAEEVAKKIMELEP 472

Query: 368 DSV 370
            S+
Sbjct: 473 RSI 475



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 116/231 (50%), Gaps = 4/231 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + L  +L   ++        ++H + +++GF ++VFV ++L+  Y        + K+
Sbjct: 169 PDSFTLSSVLPIFAECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKV 228

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P    + WNS+++G  Q+G   +AL +F  + ++ +     +F+S +  CG L SL
Sbjct: 229 FDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASL 288

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H+ +++   E  V I++ LIDMY KCG +  A  +F  M   D++SW ++I   
Sbjct: 289 RFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGY 348

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           A +G    A     R+      P+ I++  V+   +  G ++       SM
Sbjct: 349 ALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSM 399


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 162/554 (29%), Positives = 282/554 (50%), Gaps = 40/554 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y     L+A  D  +      +H  +LKS +  NVFV+ AL+  Y +   + +A  +
Sbjct: 316 PNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANI 375

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     +SWNS++SG+VQ+G Y +AL  + E+  +    D  +  S +AA  + G+ 
Sbjct: 376 FYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNT 435

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             GM IH+  +K  L+  + + N L+DMY K  S++    +F +M DKD++SW ++IA  
Sbjct: 436 LNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGH 495

Query: 181 ARNGN----LEL----------------------------------AFGFLHRLPNPDTI 202
           A+NG+    LEL                                     ++ R    D +
Sbjct: 496 AQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLV 555

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +++   + G+++ A  +   +   +  SW S+++ YV+     EAL LF  M+   
Sbjct: 556 LQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETG 615

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V  D  +  ++LS  A LSAL  G  IH  +I++G      +AS L+DMY++CG +E + 
Sbjct: 616 VEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSR 675

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           ++F  +  K+LV W +MI  Y  +G     I+LF +++    + PD + F+ VL ACSH+
Sbjct: 676 NVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMED-ESIAPDHIAFVAVLYACSHS 734

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  ++   + ESM  +Y ++P  EH   ++ L+G+   +  A + ++ +       VW 
Sbjct: 735 GL-MNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWC 793

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
           ALL A    S+ ++  I+A ++++++ ++   YV++ N+Y +   W     +R  M+  G
Sbjct: 794 ALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASG 853

Query: 503 LRKEAGCSWIEVEN 516
           L+K  GCSWIEV N
Sbjct: 854 LKKNPGCSWIEVGN 867



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 216/416 (51%), Gaps = 43/416 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYC-QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P +   F  +  +  L  D  C  ++H   +K G++S VFV+ +++G Y K N L  A +
Sbjct: 213 PLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQ 272

Query: 60  MFVEIPQPS-VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           +F  +P+   VVSWNS+IS Y  +G+  +AL LF E++++ +  + Y+F +AL AC    
Sbjct: 273 LFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSS 332

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            ++ GM IH+ ++K S    V +AN LI MY + G + +A  +F  M D D ISWNS+++
Sbjct: 333 FIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLS 392

Query: 179 ASARNGNLELAFGFLHRLPN----PDTISY------------------------------ 204
              +NG    A  F H + +    PD ++                               
Sbjct: 393 GFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDS 452

Query: 205 -----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                N +++  A+F  ++    I   MP  +  SW +I+ G+        AL LF E+Q
Sbjct: 453 DLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQ 512

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            + + +D    S++L   +GL  ++    IHS +I++GL + +V+ + ++D+Y +CG V+
Sbjct: 513 LEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVLQNGIVDVYGECGNVD 571

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
            A  MF  +  K++V+W +MI+ Y  NG   + +ELF  +K    ++PDS++ +++
Sbjct: 572 YAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKET-GVEPDSISLVSI 626



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 135/466 (28%), Positives = 230/466 (49%), Gaps = 48/466 (10%)

Query: 23  QQLHCYILKSGFLSN-VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           QQ+H +++ S  L N VF+ST L+  Y K   L DA K+F  +P  ++ +WN++I  YV 
Sbjct: 134 QQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVT 193

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           +G+   +L L+ E+  S I  DA +F   L ACG L   + G  +H   +K      V +
Sbjct: 194 NGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFV 253

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIAASARNGN----LELAFGFLHRL 196
           AN ++ MY KC  +  A  +F  M +K D++SWNS+I+A + NG     L L FG + + 
Sbjct: 254 ANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRL-FGEMQKA 312

Query: 197 P-NPDTISY-----------------------------------NEVINGIAQFGDIEDA 220
              P+T ++                                   N +I   A+FG + +A
Sbjct: 313 SLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEA 372

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             I  +M   ++ SWNS+L+G+V      EAL  + EM+      D     ++++  A  
Sbjct: 373 ANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARS 432

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
                GM IH+  +K GLD+ + V ++L+DMY+K   ++  D +F  +  K++V+W  +I
Sbjct: 433 GNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTII 492

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
            G+A+NG  ++ +ELF +++ +  +  D +   ++L ACS   +    V E    + +  
Sbjct: 493 AGHAQNGSHSRALELFREVQ-LEGIDLDVMMISSILLACSGLKL-ISSVKEIHSYIIRK- 549

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
           G+   V     ++ + G+ G V  A RM   + F    V W +++S
Sbjct: 550 GLSDLVLQ-NGIVDVYGECGNVDYAARMFELIEFKDV-VSWTSMIS 593



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 161/339 (47%), Gaps = 43/339 (12%)

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK-IVKYSLERGVVIAN 143
           ++   +LF     S+   D  +++S L  CG   +L  G  +H+  I   +L   V ++ 
Sbjct: 96  FQSLTDLFANQSPSQFSLDE-AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLST 154

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN----GNLEL----------- 188
            L+ MYGKCG + DA  +F  M  K I +WN++I A   N    G+LEL           
Sbjct: 155 RLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPL 214

Query: 189 ----------AFGFL---------HRLPNPD-----TISYNEVINGIAQFGDIEDAIMIL 224
                     A G L         H L   +         N ++    +  D+  A  + 
Sbjct: 215 DACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLF 274

Query: 225 SSMPSPNS-SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
             MP      SWNS+++ Y +  +  EAL LFGEMQ   +  + YTF   L      S +
Sbjct: 275 DRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFI 334

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             GM IH+ V+K     ++ VA+AL+ MY++ G++  A ++F ++   + ++WN+M++G+
Sbjct: 335 KQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGF 394

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +NG   + ++ + +++     +PD V  ++++AA + +
Sbjct: 395 VQNGLYHEALQFYHEMRDAGQ-KPDLVAVISIIAASARS 432


>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
 gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
 gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
 gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 545

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 148/488 (30%), Positives = 259/488 (53%), Gaps = 9/488 (1%)

Query: 20  TYCQQLHCYILKSGFLSNVFVSTALMGFYR---KINSLADAHKMFVEIPQPSVVSWNSLI 76
           T  QQ H ++LK+G   + F ++ L+ F     +  +++ AH +   I  P+  + NS+I
Sbjct: 53  TEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVI 112

Query: 77  SGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE 136
             Y  S     AL +F E+    ++ D YSFT  L AC      + G  IH   +K  L 
Sbjct: 113 RAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLV 172

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196
             V + N L+++YG+ G  E A  V   M  +D +SWNS+++A    G ++ A      +
Sbjct: 173 TDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEM 232

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
              +  S+N +I+G A  G +++A  +  SMP  +  SWN+++T Y +     E L +F 
Sbjct: 233 EERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFN 292

Query: 257 EM--QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           +M   S + P D +T  ++LS  A L +L+ G  +H  + K G++    +A+AL+DMYSK
Sbjct: 293 KMLDDSTEKP-DGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSK 351

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG+++ A  +FR+  ++++ TWN++I+  + +G     +E+F ++      +P+ +TF+ 
Sbjct: 352 CGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEM-VYEGFKPNGITFIG 410

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           VL+AC+H  +  D+  + FE M+  Y ++PT+EH   M+ L+G+ G++  A+ ++ E+  
Sbjct: 411 VLSACNHVGM-LDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPA 469

Query: 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD-VASV 493
               ++  +LL A      L+ A   A  +++L       Y  + NLY S G W+ V   
Sbjct: 470 DEASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWEKVIDG 529

Query: 494 MRNFMRER 501
            RN   ER
Sbjct: 530 RRNMRAER 537



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 5/226 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + L  +L A + LG  +  + +H YI K G     F++TAL+  Y K   +  A ++
Sbjct: 302 PDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEV 361

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +  V +WNS+IS     G  + AL +F E+       +  +F   L+AC  +G L
Sbjct: 362 FRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGML 421

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
                +   +   Y +E  +    C++D+ G+ G +E+A  +  E+  D+  I   S++ 
Sbjct: 422 DQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEASILLESLLG 481

Query: 179 ASARNGNLELAFGFLHRLPN---PDTISYNEVINGIAQFGDIEDAI 221
           A  R G LE A    +RL      D+  Y ++ N  A  G  E  I
Sbjct: 482 ACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWEKVI 527


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 149/529 (28%), Positives = 274/529 (51%), Gaps = 37/529 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH  I++     ++ ++  L+           A ++F ++ +P+V   NSLI  + Q+
Sbjct: 36  KQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQN 95

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            +  +A  +F E++R  ++AD +++   L AC     L +   +H+ I K  L   + + 
Sbjct: 96  SQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVP 155

Query: 143 NCLIDMYGKCG---------------------------------SVEDAIGVFGEMIDKD 169
           N LID Y +CG                                  + DA  +F EM  +D
Sbjct: 156 NALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRD 215

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           +ISWN+++   AR   +  AF    ++P  +T+S++ ++ G ++ GD+E A ++   MP 
Sbjct: 216 LISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPL 275

Query: 230 P--NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
           P  N  +W  I+ GY  +  + EA  L  +M +  +  D     ++L+       L+ GM
Sbjct: 276 PAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGM 335

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
            IHS + +  L ++  V +ALLDMY+KCG ++ A  +F  + +K+LV+WN M+ G   +G
Sbjct: 336 RIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHG 395

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407
              + IELF +++    ++PD VTF+ VL +C+H  +  D+  +YF SM K Y + P VE
Sbjct: 396 HGKEAIELFSRMRR-EGIRPDKVTFIAVLCSCNHAGL-IDEGIDYFYSMEKVYDLVPQVE 453

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
           H   ++ L+G+ G +  A ++++ +      V+W ALL A    +++D+A+     ++KL
Sbjct: 454 HYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKL 513

Query: 468 EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +      Y +L N+Y +  +W+  + +R+ M+  G+ K +G S +E+E+
Sbjct: 514 DPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELED 562



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           +L A ++ G  +   ++H  + +S   SN +V  AL+  Y K  +L  A  +F +IP+  
Sbjct: 321 ILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKD 380

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           +VSWN+++ G    G  ++A+ LF  + R  I  D  +F + L +C   G +  G+    
Sbjct: 381 LVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFY 440

Query: 129 KIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNL 186
            + K Y L   V    CL+D+ G+ G +++AI V   M ++ +++ W +++ A   +  +
Sbjct: 441 SMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEV 500

Query: 187 ELAFGFLH---RLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           ++A   L    +L   D  +Y+ + N  A   D E    I S M S
Sbjct: 501 DIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKS 546


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 145/477 (30%), Positives = 252/477 (52%), Gaps = 20/477 (4%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A ++F ++    V+SWNS+ISGYV +G   + L ++ ++    I  D  +  S L  C  
Sbjct: 204 AFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
            G+L LG A+HS  +K S ER +  +N L+DMY KCG ++ A+ VF +M +++++SW S+
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 177 IAASARNGNLELAFGFLHRLPNP----DTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           IA   R+G  + A   L ++       D ++   +++  A+ G +++   +   + + N 
Sbjct: 324 IAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 383

Query: 233 SS----WNSILTGYVNRNRVPEALHLFGEMQSKDV----------PMDEYTFSTMLSGIA 278
            S     N+++  Y     +  A  +F  M  KD+            D  T + +L   A
Sbjct: 384 ESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACA 443

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            LSAL  G  IH  +++ G  +   VA+AL+D+Y KCG + +A  +F  +  K+LV+W  
Sbjct: 444 SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 503

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           MI GY  +G   + I  F +++    ++PD V+F+++L ACSH+ +  ++   +F  M  
Sbjct: 504 MIAGYGMHGYGNEAIATFNEMRDA-GIEPDEVSFISILYACSHSGL-LEQGWRFFYIMKN 561

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           D+ I+P +EH   M+ L+ + G + +A   +  L       +W ALL       D+++A 
Sbjct: 562 DFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAE 621

Query: 459 ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
             A  V +LE ++   YV+L N+Y     W+    +R  + ++GLRK  GCSWIE++
Sbjct: 622 KVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIK 678



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 195/420 (46%), Gaps = 34/420 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H   +KS F   +  S  L+  Y K   L  A ++F ++ + +VVSW S+I+GY + 
Sbjct: 271 KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+   A+ L  ++E+  +  D  + TS L AC + GSL  G  +H  I   ++E  + + 
Sbjct: 331 GRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVC 390

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA------------------SARNG 184
           N L+DMY KCGS+E A  VF  M+ KDIISWN++I                    SA   
Sbjct: 391 NALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALER 450

Query: 185 NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
             E+    L    + D    N +++   + G +  A ++   +PS +  SW  ++ GY  
Sbjct: 451 GKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGM 510

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQ--GLDA 300
                EA+  F EM+   +  DE +F ++L     +GL    W       ++K    ++ 
Sbjct: 511 HGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFY---IMKNDFNIEP 567

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            +   + ++D+ S+ G +  A     +L    +   W A++ G     D    IEL E++
Sbjct: 568 KLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHD----IELAEKV 623

Query: 360 -KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
            + V +L+P++  +  +LA        +++V    E + K  G++      CS I + G+
Sbjct: 624 AERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQ-GLRKNPG--CSWIEIKGK 680



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 148/314 (47%), Gaps = 14/314 (4%)

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           V  +N+ I  + Q G    A+ L    ++SE+    Y   S L  C  L S   G  +HS
Sbjct: 66  VTDYNAKILHFCQLGDLENAMELICMCQKSELETKTYG--SVLQLCAGLKSFTDGKKVHS 123

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
            I   S+     +   L+  Y  CG +++   VF  M  K++  WN +++  A+ G+ + 
Sbjct: 124 IIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKE 183

Query: 189 AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV 248
           +            I   + I G       E A  +   +   +  SWNS+++GYV+    
Sbjct: 184 SICLF-------KIMVEKGIEGKRP----ESAFELFDKLCDRDVISWNSMISGYVSNGLT 232

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
              L ++ +M    + +D  T  ++L G A    L+ G  +HS  IK   +  I  ++ L
Sbjct: 233 ERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTL 292

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           LDMYSKCG ++ A  +F  +  +N+V+W +MI GY R+G     I+L +Q++    ++ D
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEK-EGVKLD 351

Query: 369 SVTFLNVLAACSHT 382
            V   ++L AC+ +
Sbjct: 352 VVAITSILHACARS 365



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 35/223 (15%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  +L A + L      +++H YIL++G+ S+  V+ AL+  Y K   L  A  +
Sbjct: 430 PDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLL 489

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP   +VSW  +I+GY   G   +A+  F E+  + I  D  SF S L AC   G L
Sbjct: 490 FDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 549

Query: 121 QLGMAIHSKIVK--YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           + G      I+K  +++E  +    C++D+                              
Sbjct: 550 EQGWRFFY-IMKNDFNIEPKLEHYACMVDLL----------------------------- 579

Query: 179 ASARNGNLELAFGFLHRLP-NPDTISYNEVINGIAQFGDIEDA 220
             +R GNL  A+ F+  LP  PD   +  ++ G   + DIE A
Sbjct: 580 --SRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELA 620


>gi|297738941|emb|CBI28186.3| unnamed protein product [Vitis vinifera]
          Length = 760

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 166/527 (31%), Positives = 272/527 (51%), Gaps = 61/527 (11%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QLH  ILK G    VFV  AL+  Y +   L +A +             NS +       
Sbjct: 197 QLHSRILKCGLDCEVFVGNALITMYSRCCRLVEARR------------GNSGL------- 237

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
              +A+ +F+E+ +  +  D  SFT A++ACG     +LG  IHS  VK   +  V + N
Sbjct: 238 ---EAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCN 294

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA-----------RNG---NLELA 189
            LI  Y KC  +EDA  VF  +ID++++SW ++I+ S            R+G   N    
Sbjct: 295 VLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMISISEEDATSLFNEMRRDGVYPNDVTF 354

Query: 190 FGFLHRLPNPDTISYNEVINGI--------------------AQFGDIEDAIMILSSMPS 229
            G +H +   + +   ++I+G+                    A+F  + D++ +   +  
Sbjct: 355 VGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKVFEELNY 414

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW--GM 287
               SWNS+++GY       EAL  F     +  P +E+TF ++LS IA   A++   G 
Sbjct: 415 REIISWNSLISGYAQNGLWQEALQTFLSALMESRP-NEFTFGSVLSSIASAEAISMRHGQ 473

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
             HS ++K GL+ + +V+SALLDMY+K G +  +  +F     KN V W A+I+ +AR+G
Sbjct: 474 RCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLGVFSETPLKNEVAWTAIISAHARHG 533

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407
           D   V+ LF+ ++    ++PDS+TFL V+ AC    +  D   + F SM KD+ I+P+ E
Sbjct: 534 DYEAVMNLFKDMER-EGVKPDSITFLAVITACGRKGM-VDTGYQLFNSMVKDHLIEPSPE 591

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
           H  SM+ ++G+ G +  A+  + ++  G+   V ++LL A     ++D+A+  A ++I++
Sbjct: 592 HYSSMVDMLGRAGRLKEAEEFVGQIPGGAGLSVLQSLLGACRIHGNVDMAKRVADDLIEM 651

Query: 468 EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           E      YV++ NLY   G W+  + +R  MRERG+RKE G SW++V
Sbjct: 652 EPMGSGSYVLMSNLYAEKGEWEKVAKIRKGMRERGVRKEIGFSWVDV 698



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 216/450 (48%), Gaps = 30/450 (6%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H + + SGF+S+V V  +LM  Y K      A  +F  +  P +VSWN+++SG+ +S 
Sbjct: 99  QIHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGFQRSD 158

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
               ALN  + +  + +  DA + T+ LA C        G  +HS+I+K  L+  V + N
Sbjct: 159 ---DALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGN 215

Query: 144 CLIDMYGKC---------GSVEDAIGVFGEMIDK----DIISWNSVIAASARNGNLELAF 190
            LI MY +C          S  +AI VF EM+ +    D +S+   I+A       EL  
Sbjct: 216 ALITMYSRCCRLVEARRGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGR 275

Query: 191 GFLHRLP-----NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245
             +H L      +      N +I+  ++  DIEDA ++  S+   N  SW ++++     
Sbjct: 276 Q-IHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMIS----- 329

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
               +A  LF EM+   V  ++ TF  ++  I   + +  G +IH   +K    + + V+
Sbjct: 330 ISEEDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVS 389

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           ++L+ MY+K   +  +  +F  L  + +++WN++I+GYA+NG   + ++ F  L  + + 
Sbjct: 390 NSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTF--LSALMES 447

Query: 366 QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425
           +P+  TF +VL++ +  +    +  +   S     G+        +++ +  ++G +  +
Sbjct: 448 RPNEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICES 507

Query: 426 QRMIRELGFGSYGVVWRALLSASGACSDLD 455
             +  E    +  V W A++SA     D +
Sbjct: 508 LGVFSETPLKNE-VAWTAIISAHARHGDYE 536



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 163/324 (50%), Gaps = 34/324 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+     L+ A +        Q +H   +K+ FLS + VS +L+  Y K  S++D+ K+
Sbjct: 349 PNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKV 408

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALA--ACGQLG 118
           F E+    ++SWNSLISGY Q+G +++AL  F+     E   + ++F S L+  A  +  
Sbjct: 409 FEELNYREIISWNSLISGYAQNGLWQEALQTFLS-ALMESRPNEFTFGSVLSSIASAEAI 467

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           S++ G   HS I+K  L    ++++ L+DMY K GS+ +++GVF E   K+ ++W ++I+
Sbjct: 468 SMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLGVFSETPLKNEVAWTAIIS 527

Query: 179 ASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSM------- 227
           A AR+G+ E        +      PD+I++  VI    + G ++    + +SM       
Sbjct: 528 AHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKGMVDTGYQLFNSMVKDHLIE 587

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
           PSP    ++S++       R+ EA    G+                + G AGLS L    
Sbjct: 588 PSPE--HYSSMVDMLGRAGRLKEAEEFVGQ----------------IPGGAGLSVLQ--S 627

Query: 288 LIHSCVIKQGLDASIVVASALLDM 311
           L+ +C I   +D +  VA  L++M
Sbjct: 628 LLGACRIHGNVDMAKRVADDLIEM 651



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 156/341 (45%), Gaps = 46/341 (13%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H   +K G+ ++V V   L+  Y K   + DA  +F  I   +VVSW ++IS   + 
Sbjct: 275 RQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMISISEED 334

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
                A +LF E+ R  +Y +  +F   + A      ++ G  IH   VK S    + ++
Sbjct: 335 -----ATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVS 389

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF-GFLHRL--PNP 199
           N LI MY K  S+ D++ VF E+  ++IISWNS+I+  A+NG  + A   FL  L    P
Sbjct: 390 NSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALMESRP 449

Query: 200 DTISYNEVINGI-------------------------------------AQFGDIEDAIM 222
           +  ++  V++ I                                     A+ G I +++ 
Sbjct: 450 NEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLG 509

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           + S  P  N  +W +I++ +         ++LF +M+ + V  D  TF  +++       
Sbjct: 510 VFSETPLKNEVAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKGM 569

Query: 283 LTWGMLIHSCVIKQGL-DASIVVASALLDMYSKCGQVEIAD 322
           +  G  + + ++K  L + S    S+++DM  + G+++ A+
Sbjct: 570 VDTGYQLFNSMVKDHLIEPSPEHYSSMVDMLGRAGRLKEAE 610



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 161/356 (45%), Gaps = 30/356 (8%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           ++  +S    H+   + PQ ++ S N  +   ++     +AL+LF +  +     +    
Sbjct: 22  FKYFHSSKHVHQPLDQSPQTTIASLNRSMLTALRRNLSLEALDLFKKQLQWGFVGNIDQV 81

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
           T A+      G  +LG  IH+  +       V + N L++MY K G  + A+ VF  + +
Sbjct: 82  TVAIVLKACCGDSKLGCQIHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLNN 141

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEV--INGIAQFGDIEDAIM--- 222
            DI+SWN+V++   R+ +   A  F  R+ N   ++++ V     +A   D E  I    
Sbjct: 142 PDIVSWNTVLSGFQRSDD---ALNFALRM-NFTGVAFDAVTCTTVLAFCSDHEGFIFGFQ 197

Query: 223 ----ILSSMPSPNSSSWNSILTGYVNRNRVP---------EALHLFGEMQSKDVPMDEYT 269
               IL           N+++T Y    R+          EA+ +F EM  + + +D  +
Sbjct: 198 LHSRILKCGLDCEVFVGNALITMYSRCCRLVEARRGNSGLEAILVFLEMLKEGMKLDHVS 257

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           F+  +S          G  IHS  +K G D  + V + L+  YSKC  +E A  +F S+ 
Sbjct: 258 FTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVFESII 317

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACSHTDI 384
            +N+V+W  MI+    +        LF +++  RD + P+ VTF+ ++ A +  ++
Sbjct: 318 DRNVVSWTTMISISEEDA-----TSLFNEMR--RDGVYPNDVTFVGLIHAITMKNL 366


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 154/539 (28%), Positives = 288/539 (53%), Gaps = 48/539 (8%)

Query: 23  QQLHCYILKSGFL-SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           +++H ++L++G +   + VS  L+  Y K  ++  A ++F  +     +SWN++I+   Q
Sbjct: 402 REVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQ 461

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           +G    A+  +  + ++ I    ++  S L++C  LG L  G  +H   VK+ L     +
Sbjct: 462 NGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSV 521

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV--IAASARNGNLELAFGFLHRLPN- 198
           +N L+ MYG+CG + +   +F  M   D++SWNS+  + AS++    E    F + + + 
Sbjct: 522 SNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSG 581

Query: 199 --PDTISY-----------------------------------NEVINGIAQFGDIEDAI 221
             P+ +++                                   N +++  A+ GD++   
Sbjct: 582 LVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCE 641

Query: 222 MILSSMPSPNSS-SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
            + S M     + SWNS+++GY+    + EA+     M   +  MD  TFS +L+  A +
Sbjct: 642 RLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASV 701

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           +AL  GM +H+  ++  L++ +VV SAL+DMYSKCG+++ A  +F S+ +KN  +WN+MI
Sbjct: 702 AALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMI 761

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           +GYAR+G   K +E+FE+++   +  PD VTF++VL+ACSH  +  ++  +YFE M +DY
Sbjct: 762 SGYARHGLGRKALEIFEEMQESGE-SPDHVTFVSVLSACSHAGL-VERGLDYFELM-EDY 818

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA---SGACSDLDVA 457
           GI P +EH   +I L+G+ GE+ + Q  ++ +      ++WR +L A   S   + +D+ 
Sbjct: 819 GILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLG 878

Query: 458 RISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
             ++  +++LE  +   YV+    + + G W+  +  R  M+   ++KEAG SW+ + +
Sbjct: 879 TEASRMLLELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTD 937



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 172/387 (44%), Gaps = 58/387 (14%)

Query: 17  GWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLI 76
           G D   + LH  ++K G   ++F++  L+  Y K   L  A ++F  +P  + VSW  LI
Sbjct: 79  GCDASPESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLI 138

Query: 77  SGYVQSGKYRKALNLFVELERS--EIYADAYSFTSALAACGQLGSLQLGMA--IHSKIVK 132
           SG+V SG    A  LF  + R        +++F S L AC   G  +LG A  +H  + K
Sbjct: 139 SGHVLSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSK 198

Query: 133 YSLERGVVIANCLIDMYGKC--GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF 190
                   + N LI MYG C  G    A  VF     +D+I+WN++++  A+ G+    F
Sbjct: 199 TEFTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTF 258

Query: 191 GFLHRLPNPD----------------TISY----------------------------NE 206
                +   D                T +Y                            + 
Sbjct: 259 TLFRAMQYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSA 318

Query: 207 VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF-GEMQSKDVPM 265
           +++  A+ G +++A  I   +   N+ + N ++ G V +     A  +F G   S  V +
Sbjct: 319 LVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNV 378

Query: 266 DEYTFSTMLSGIAGLS----ALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEI 320
           D  T+  +LS IA  S     L  G  +H+ V++ G +   I V++ L++MY+KCG ++ 
Sbjct: 379 D--TYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDK 436

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNG 347
           A  +F+ +  ++ ++WN +IT   +NG
Sbjct: 437 ACRVFQLMEARDRISWNTIITALDQNG 463



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 180/411 (43%), Gaps = 42/411 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +     L + + LG     QQLHC  +K G   +  VS AL+  Y +   +++  ++
Sbjct: 482 PSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEI 541

Query: 61  FVEIPQPSVVSWNSLISGYVQS-GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F  +    VVSWNS++     S     +++ +F  + +S +  +  +F + LAA   L  
Sbjct: 542 FNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSV 601

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIA 178
           L+LG  IHS ++K+ +     + N L+  Y K G V+    +F  M   +D ISWNS+I+
Sbjct: 602 LELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMIS 661

Query: 179 ASARNGNLELAFG----FLHRLPNPDTISYNEVINGIA---------------------- 212
               NG+L+ A       +H     D  +++ V+N  A                      
Sbjct: 662 GYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLES 721

Query: 213 -------------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                        + G I+ A  +  SM   N  SWNS+++GY       +AL +F EMQ
Sbjct: 722 DVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQ 781

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
                 D  TF ++LS  +    +  G+     +   G+   I   S ++D+  + G+++
Sbjct: 782 ESGESPDHVTFVSVLSACSHAGLVERGLDYFELMEDYGILPRIEHYSCVIDLLGRAGELD 841

Query: 320 -IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
            I + M R   + N + W  ++    ++    K+    E  + + +L+P +
Sbjct: 842 KIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQN 892



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 91/188 (48%), Gaps = 9/188 (4%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM- 258
           D    N ++N  A+   ++ A  +   MP  N+ SW  +++G+V      +A  LF  M 
Sbjct: 99  DLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAML 158

Query: 259 -QSKDVPMDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
            +        +TF ++L     +G   L + + +H  V K    ++  V +AL+ MY  C
Sbjct: 159 REGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSC 218

Query: 316 --GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK---TVRDLQPDSV 370
             G   +A  +F +   ++L+TWNA+++ YA+ GD      LF  ++   +  +L+P   
Sbjct: 219 SVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEH 278

Query: 371 TFLNVLAA 378
           TF +++ A
Sbjct: 279 TFGSLITA 286



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/375 (20%), Positives = 154/375 (41%), Gaps = 54/375 (14%)

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
           ++H ++VK  L   + +AN L++ Y K   ++ A  VF  M  ++ +SW  +I+    +G
Sbjct: 86  SLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSG 145

Query: 185 NLELAFGFLHRL-----------------------PNPDTISYNEVING----------- 210
             E AF     +                         PD + +   ++G           
Sbjct: 146 LPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNT 205

Query: 211 ------IAQFGDIEDAIMILS-----SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                 I+ +G       IL+     + P  +  +WN++++ Y  R        LF  MQ
Sbjct: 206 TVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQ 265

Query: 260 SKDVPMD----EYTFSTMLSGIAGLSALTWGML--IHSCVIKQGLDASIVVASALLDMYS 313
             D  ++    E+TF ++++    LS+ + G+L  +   V+K G  + + V SAL+  ++
Sbjct: 266 YDDSGIELRPTEHTFGSLITATY-LSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFA 324

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS-VTF 372
           + G ++ A  ++  L  +N VT N +I G  +        E+F   +    +  D+ V  
Sbjct: 325 RHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVVL 384

Query: 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
           L+ +A  S  +    K  E    + +   I   +     ++ +  + G + +A R+  +L
Sbjct: 385 LSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVF-QL 443

Query: 433 GFGSYGVVWRALLSA 447
                 + W  +++A
Sbjct: 444 MEARDRISWNTIITA 458


>gi|357147965|ref|XP_003574566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 923

 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 163/542 (30%), Positives = 269/542 (49%), Gaps = 44/542 (8%)

Query: 12  ASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVS 71
           ASSD  + +Y   +H   L++G  S + V  AL+  Y     LADA  +F  + +  ++S
Sbjct: 258 ASSD--YVSYGSGVHSLCLRTGLHSYIPVVNALVNMYSSAGKLADAEFLFWNMSRRDLIS 315

Query: 72  WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIV 131
           WN++IS YVQ+G    AL    +L  +    D  +F+SAL AC   G+L  G  +H+  +
Sbjct: 316 WNTMISSYVQNGNNMDALKTLGQLLHTNEGPDRMTFSSALGACSSPGALMDGRMVHAMTL 375

Query: 132 KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA---------- 181
           + SL   +++ N LI MYGKC S+EDA  +F  M + D++S N +I + A          
Sbjct: 376 QLSLHHNLLVGNSLITMYGKCNSIEDAERIFQLMPNHDVVSCNILIGSYAVLEDGTKAMQ 435

Query: 182 ------------------------------RNGNLELAFGFLHRLPNPDTISYNEVINGI 211
                                         RN  L L    +H     D    N +I   
Sbjct: 436 VFFWMRRGEVKLNYITIVNILGSFTSSNDLRNYGLPLHAYTIHAGFLSDDYVSNSLITMY 495

Query: 212 AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271
           A+ GD+E +  +   + + +  SWN+++   V      E+L LF +M+     +D    +
Sbjct: 496 AKCGDLESSNNVFQRIINRSVVSWNAMIAANVQHGHGEESLKLFMDMRHDGNGLDHICLA 555

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
             +S  A L++L  GM +H   +K GL     V +A +DMY KCG+++    M      +
Sbjct: 556 ECMSSSASLASLEEGMQLHGLGLKCGLGNDSHVVNAAMDMYGKCGKMDEMLKMLPDPAIR 615

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE 391
               WN +I+GYAR G   +  E F+ + +V    PD VTF+ +L+ACSH  +  DK  +
Sbjct: 616 PQQCWNTLISGYARYGYFKEAEETFKHMISV-GRTPDYVTFVTLLSACSHAGL-VDKGID 673

Query: 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC 451
           Y+ SM+  +G+ P ++HC  ++ ++G+ G    A++ I ++      ++WR+LLS+S   
Sbjct: 674 YYNSMSSVFGVSPGIKHCVCIVDILGRLGRFAEAEKFIEDMPVLPNDLIWRSLLSSSRTH 733

Query: 452 SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSW 511
            +LD+ R +A  +++L+   D  YV+L NLY +   W     +R+ M+   L K   CSW
Sbjct: 734 KNLDIGRKAAKRLLELDPFDDSAYVLLSNLYATSARWSDVDRVRSHMKTINLNKIPACSW 793

Query: 512 IE 513
           ++
Sbjct: 794 LK 795



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 193/394 (48%), Gaps = 41/394 (10%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H    K+G + NV++ TAL+  Y     + DA ++F E+P+ +VVSW +L+     +G 
Sbjct: 66  IHALTQKAGLMVNVYIGTALLHLYGSQKHVLDAQRLFWEMPERNVVSWTALMVALSSNGH 125

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
             +AL  +  + R  I  +A +F + ++ CG L     G+ + S ++   L+R V +AN 
Sbjct: 126 LEEALGYYRRMRRERIACNANAFATVVSLCGSLEDEVAGLQVFSHVIVSGLQRQVSVANS 185

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF---------GFLHR 195
           LI M G  G V DA  +F  M ++D +SWN++++  +  G    +F         G L  
Sbjct: 186 LISMLGNLGRVHDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDMRRGGLLRH 245

Query: 196 -----------LPNPDTISY--------------------NEVINGIAQFGDIEDAIMIL 224
                        + D +SY                    N ++N  +  G + DA  + 
Sbjct: 246 DATTLCSLISVCASSDYVSYGSGVHSLCLRTGLHSYIPVVNALVNMYSSAGKLADAEFLF 305

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
            +M   +  SWN++++ YV      +AL   G++   +   D  TFS+ L   +   AL 
Sbjct: 306 WNMSRRDLISWNTMISSYVQNGNNMDALKTLGQLLHTNEGPDRMTFSSALGACSSPGALM 365

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G ++H+  ++  L  +++V ++L+ MY KC  +E A+ +F+ +   ++V+ N +I  YA
Sbjct: 366 DGRMVHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERIFQLMPNHDVVSCNILIGSYA 425

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
              D TK +++F  ++   +++ + +T +N+L +
Sbjct: 426 VLEDGTKAMQVFFWMRR-GEVKLNYITIVNILGS 458



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 179/378 (47%), Gaps = 41/378 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+  +++ SG    V V+ +L+     +  + DA K+F  + +   VSWN+L+S Y   G
Sbjct: 166 QVFSHVIVSGLQRQVSVANSLISMLGNLGRVHDAEKLFYRMEERDTVSWNALVSMYSHEG 225

Query: 84  KYRKALNLFVELERSEIYA-DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
              K+  +F ++ R  +   DA +  S ++ C     +  G  +HS  ++  L   + + 
Sbjct: 226 LCSKSFRVFSDMRRGGLLRHDATTLCSLISVCASSDYVSYGSGVHSLCLRTGLHSYIPVV 285

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPN 198
           N L++MY   G + DA  +F  M  +D+ISWN++I++  +NGN    L+     LH    
Sbjct: 286 NALVNMYSSAGKLADAEFLFWNMSRRDLISWNTMISSYVQNGNNMDALKTLGQLLHTNEG 345

Query: 199 PDTISY-----------------------------------NEVINGIAQFGDIEDAIMI 223
           PD +++                                   N +I    +   IEDA  I
Sbjct: 346 PDRMTFSSALGACSSPGALMDGRMVHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERI 405

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              MP+ +  S N ++  Y       +A+ +F  M+  +V ++  T   +L      + L
Sbjct: 406 FQLMPNHDVVSCNILIGSYAVLEDGTKAMQVFFWMRRGEVKLNYITIVNILGSFTSSNDL 465

Query: 284 -TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
             +G+ +H+  I  G  +   V+++L+ MY+KCG +E ++++F+ +  +++V+WNAMI  
Sbjct: 466 RNYGLPLHAYTIHAGFLSDDYVSNSLITMYAKCGDLESSNNVFQRIINRSVVSWNAMIAA 525

Query: 343 YARNGDLTKVIELFEQLK 360
             ++G   + ++LF  ++
Sbjct: 526 NVQHGHGEESLKLFMDMR 543



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 186/401 (46%), Gaps = 44/401 (10%)

Query: 71  SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ-LGMAIHSK 129
           SW + ISG V+ G+   A ++   +    +    ++  S + AC +    +  G AIH+ 
Sbjct: 10  SWYTAISGCVRCGRDSTAFSMLRGMRERGVPLSGFALASLVTACERWEEGRACGAAIHAL 69

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
             K  L   V I   L+ +YG    V DA  +F EM +++++SW +++ A + NG+LE A
Sbjct: 70  TQKAGLMVNVYIGTALLHLYGSQKHVLDAQRLFWEMPERNVVSWTALMVALSSNGHLEEA 129

Query: 190 FGFLHRLPN--------------------PDTIS-------------------YNEVING 210
            G+  R+                       D ++                    N +I+ 
Sbjct: 130 LGYYRRMRRERIACNANAFATVVSLCGSLEDEVAGLQVFSHVIVSGLQRQVSVANSLISM 189

Query: 211 IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD-VPMDEYT 269
           +   G + DA  +   M   ++ SWN++++ Y +     ++  +F +M+    +  D  T
Sbjct: 190 LGNLGRVHDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDMRRGGLLRHDATT 249

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
             +++S  A    +++G  +HS  ++ GL + I V +AL++MYS  G++  A+ +F ++ 
Sbjct: 250 LCSLISVCASSDYVSYGSGVHSLCLRTGLHSYIPVVNALVNMYSSAGKLADAEFLFWNMS 309

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389
           R++L++WN MI+ Y +NG+    ++   QL    +  PD +TF + L ACS      D  
Sbjct: 310 RRDLISWNTMISSYVQNGNNMDALKTLGQLLHTNE-GPDRMTFSSALGACSSPGALMD-- 366

Query: 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
                +MT    +   +    S+I + G+   +  A+R+ +
Sbjct: 367 GRMVHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERIFQ 407



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/439 (21%), Positives = 180/439 (41%), Gaps = 42/439 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+       L A S  G     + +H   L+     N+ V  +L+  Y K NS+ DA ++
Sbjct: 346 PDRMTFSSALGACSSPGALMDGRMVHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERI 405

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P   VVS N LI  Y       KA+ +F  + R E+  +  +  + L +      L
Sbjct: 406 FQLMPNHDVVSCNILIGSYAVLEDGTKAMQVFFWMRRGEVKLNYITIVNILGSFTSSNDL 465

Query: 121 Q-LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           +  G+ +H+  +         ++N LI MY KCG +E +  VF  +I++ ++SWN++IAA
Sbjct: 466 RNYGLPLHAYTIHAGFLSDDYVSNSLITMYAKCGDLESSNNVFQRIINRSVVSWNAMIAA 525

Query: 180 SARNGN----LELAFGFLHRLPNPDTISYNEVIN---------------------GIAQF 214
           + ++G+    L+L     H     D I   E ++                     G+   
Sbjct: 526 NVQHGHGEESLKLFMDMRHDGNGLDHICLAECMSSSASLASLEEGMQLHGLGLKCGLGND 585

Query: 215 GDIEDAIM-----------ILSSMPSP---NSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
             + +A M           +L  +P P       WN++++GY       EA   F  M S
Sbjct: 586 SHVVNAAMDMYGKCGKMDEMLKMLPDPAIRPQQCWNTLISGYARYGYFKEAEETFKHMIS 645

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVE 319
                D  TF T+LS  +    +  G+  ++ +    G+   I     ++D+  + G+  
Sbjct: 646 VGRTPDYVTFVTLLSACSHAGLVDKGIDYYNSMSSVFGVSPGIKHCVCIVDILGRLGRFA 705

Query: 320 IADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            A+     +    N + W ++++    + +L    +  ++L  +      +   L+ L A
Sbjct: 706 EAEKFIEDMPVLPNDLIWRSLLSSSRTHKNLDIGRKAAKRLLELDPFDDSAYVLLSNLYA 765

Query: 379 CSHTDIPFDKVSEYFESMT 397
            S      D+V  + +++ 
Sbjct: 766 TSARWSDVDRVRSHMKTIN 784



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 105/232 (45%), Gaps = 10/232 (4%)

Query: 227 MPSPN--SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL-SAL 283
           MP  +   SSW + ++G V   R   A  +   M+ + VP+  +  +++++         
Sbjct: 1   MPDDHRTPSSWYTAISGCVRCGRDSTAFSMLRGMRERGVPLSGFALASLVTACERWEEGR 60

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH+   K GL  ++ + +ALL +Y     V  A  +F  +  +N+V+W A++   
Sbjct: 61  ACGAAIHALTQKAGLMVNVYIGTALLHLYGSQKHVLDAQRLFWEMPERNVVSWTALMVAL 120

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           + NG L + +  + +++  R +  ++  F  V++ C   +     +  +   +    G++
Sbjct: 121 SSNGHLEEALGYYRRMRRER-IACNANAFATVVSLCGSLEDEVAGLQVFSHVIVS--GLQ 177

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA---SGACS 452
             V    S+I ++G  G V  A+++   +      V W AL+S     G CS
Sbjct: 178 RQVSVANSLISMLGNLGRVHDAEKLFYRMEERD-TVSWNALVSMYSHEGLCS 228


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 167/600 (27%), Positives = 279/600 (46%), Gaps = 89/600 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    + +A  ++         H     +GF+SNVFV  AL+  Y +  SL+DA K+
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKV 184

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS-EIYADAYSFTSALAACGQLGS 119
           F E+P   VVSWNS+I  Y + GK + AL +F ++        D  +  + L  C  +G+
Sbjct: 185 FDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGT 244

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGK---------------------------- 151
             LG   H   V   + + + + NCL+DMY K                            
Sbjct: 245 RSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAG 304

Query: 152 ---CGSVEDAIGVFGEM----IDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PD 200
               G  EDA+ +F +M    I  D+++W++ I+  A+ G    A G   ++ +    P+
Sbjct: 305 YSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364

Query: 201 TISYNEVINGIAQFG--------------------------------------------D 216
            ++   V++G A  G                                            D
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVD 424

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM--DEYTFSTML 274
           I  A+    S    +  +W  ++ GY       +AL L  EM  +D     + +T S  L
Sbjct: 425 IARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL 484

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDA-SIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
              A L+AL+ G  IH+  ++   +A  + V++ L+DMY+KCG +  A  +F ++  KN 
Sbjct: 485 VACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNE 544

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393
           VTW +++TGY  +G   + + +FE+++ +   + D VT L VL ACSH+ +  D+  EYF
Sbjct: 545 VTWTSLMTGYGMHGYGEEALGIFEEMRRI-GFKLDGVTLLVVLYACSHSGM-IDQGMEYF 602

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD 453
             M  D+G+ P  EH   ++ L+G+ G +  A R+I E+      VVW ALLS       
Sbjct: 603 NRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGK 662

Query: 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
           +++   +A ++ +L  ++D  Y +L N+Y + G W   + +R+ MR +G++K  GCSW+E
Sbjct: 663 VELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVE 722



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 138/514 (26%), Positives = 229/514 (44%), Gaps = 94/514 (18%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS---VVSWNSLISGYVQ 81
           +H  +L  G L+ + +++ L+  Y  +  L+ A  +    P PS   V  WNSLI  Y  
Sbjct: 47  IHQKLLSFGILT-LNLTSHLISTYISLGCLSHAVSLLRRFP-PSDAGVYHWNSLIRSYGN 104

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           +G+  K L+ F  +       D Y+F     ACG++ S++ G + H+          V +
Sbjct: 105 NGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFV 164

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN--- 198
            N L+ MY +CGS+ DA  VF EM   D++SWNS+I + A+ G  ++A     ++ N   
Sbjct: 165 GNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFG 224

Query: 199 --PDTISY-----------------------------------NEVINGIAQFGDIEDAI 221
             PD I+                                    N +++  A+FG +++A 
Sbjct: 225 FRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEAN 284

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD--------------- 266
            + S+MP  +  SWN+++ GY    R  +A+ LF +MQ + + MD               
Sbjct: 285 TVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRG 344

Query: 267 --------------------EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI---- 302
                               E T  ++LSG A + AL  G  IH   IK  +D       
Sbjct: 345 LGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHG 404

Query: 303 ---VVASALLDMYSKCGQVEIADSMFRSLCRK--NLVTWNAMITGYARNGDLTKVIELF- 356
              +V + L+DMY+KC +V+IA +MF SL  K  ++VTW  MI GY+++GD  K +EL  
Sbjct: 405 DENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLS 464

Query: 357 EQLKTVRDLQPDSVTFLNVLAAC-SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415
           E  +     +P++ T    L AC S   +   K    +    +   +   V +C  +I +
Sbjct: 465 EMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNC--LIDM 522

Query: 416 MGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
             + G++  A R++ +       V W +L++  G
Sbjct: 523 YAKCGDIGDA-RLVFDNMMEKNEVTWTSLMTGYG 555



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 98/433 (22%), Positives = 184/433 (42%), Gaps = 66/433 (15%)

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANC---LIDMYGKCGSVEDAIGVFGEMIDKD- 169
           C  +  ++L   IH K++ +    G++  N    LI  Y   G +  A+ +       D 
Sbjct: 38  CKTISQVKL---IHQKLLSF----GILTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDA 90

Query: 170 -IISWNSVIAASARNGNLEL---AFGFLHRLP-NPDTISY-------------------- 204
            +  WNS+I +   NG       +F  +H L   PD  ++                    
Sbjct: 91  GVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSH 150

Query: 205 ---------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
                          N ++   ++ G + DA  +   MP  +  SWNSI+  Y    +  
Sbjct: 151 ALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPK 210

Query: 250 EALHLFGEMQSK-DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
            AL +F +M ++     D+ T   +L   A +   + G   H   +   +  ++ V + L
Sbjct: 211 MALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCL 270

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           +DMY+K G ++ A+++F ++  K++V+WNAM+ GY++ G     + LFEQ++  + ++ D
Sbjct: 271 VDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEK-IKMD 329

Query: 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-------VEHCCSMIRLMGQKGE 421
            VT+   ++  +   + ++ +    + ++   GIKP        +  C S+  LM  K  
Sbjct: 330 VVTWSAAISGYAQRGLGYEALGVCRQMLSS--GIKPNEVTLISVLSGCASVGALMHGKEI 387

Query: 422 VWRAQRM---IRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
              A +    +R+ G G   +V   L+     C  +D+AR     +   E D     VM+
Sbjct: 388 HCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMI 447

Query: 479 CNLYTSHGNWDVA 491
              Y+ HG+ + A
Sbjct: 448 GG-YSQHGDANKA 459


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 161/553 (29%), Positives = 281/553 (50%), Gaps = 41/553 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N +VL  +L+    +        +H    K G   N FV TAL+  Y    ++  A  +F
Sbjct: 147 NHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVF 206

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             I     V+W +++S Y ++     ALN F ++  +    + +  TSAL A   L S  
Sbjct: 207 DGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSAL 266

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           LG  IH   VK   +    +   L+DMY KCG +EDA  +F  +   D+I W+ +I+  A
Sbjct: 267 LGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYA 326

Query: 182 RNGNLELAFGFLHRL------PNPDTIS-------------------------------- 203
           ++   E AF    R+      PN  ++S                                
Sbjct: 327 QSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELF 386

Query: 204 -YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +++  A+  ++E+++ I SS+   N  SWN+I+ GY       +AL +F EM++  
Sbjct: 387 VGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAH 446

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +   + TFS++L   A  S++   + IHS + K   +   +V ++L+D Y+KCG +  A 
Sbjct: 447 MLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDAL 506

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F S+   ++V+WN++I+ YA +G  T  +ELF+++    D++ + VTF+++L+ C  T
Sbjct: 507 KVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNK-SDIKANDVTFVSLLSVCGST 565

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  ++    F SM  D+ IKP++EH   ++RL+G+ G +  A + I ++      +VWR
Sbjct: 566 GL-VNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWR 624

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
           ALLS+     ++ + R +A +V+ +E   +  YV+L N+Y + G  D  ++ R  MR  G
Sbjct: 625 ALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVG 684

Query: 503 LRKEAGCSWIEVE 515
           ++KEAG SW+E++
Sbjct: 685 VKKEAGLSWVEIK 697



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 193/401 (48%), Gaps = 42/401 (10%)

Query: 23  QQLHCYILKSGFLS--NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           + +H  +++ G ++  + F +  L+ FY K+  LA A ++F  +P+ + VS+ +L+ GY 
Sbjct: 65  RAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYA 124

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
             G++ +AL LF  L+R     + +  T+ L     + +  L   IH+   K   +R   
Sbjct: 125 LRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAF 184

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
           +   LID Y  CG+V  A  VF  ++ KD ++W ++++  + N   E A     ++    
Sbjct: 185 VGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTG 244

Query: 197 --PNP-------------------------------DTISY--NEVINGIAQFGDIEDAI 221
             PNP                               DT  +    +++  A+ GDIEDA 
Sbjct: 245 FKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAH 304

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            I   +P  +   W+ +++ Y    +  +A  +F  M    V  +E++ S +L   A ++
Sbjct: 305 AIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIA 364

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  IH+  IK G ++ + V +AL+DMY+KC  +E +  +F SL   N V+WN +I 
Sbjct: 365 FLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIV 424

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           GY ++G     + +F +++    L    VTF +VL AC++T
Sbjct: 425 GYCQSGFAEDALSVFHEMRAAHMLST-QVTFSSVLRACANT 464



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 167/358 (46%), Gaps = 40/358 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +VL   L+A+  L      + +H   +K+ + +   V  AL+  Y K   + DAH +
Sbjct: 247 PNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAI 306

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP   V+ W+ LIS Y QS +  +A  +F+ + RS +  + +S +  L AC  +  L
Sbjct: 307 FEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFL 366

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  IH+  +K   E  + + N L+DMY KC ++E+++ +F  + D + +SWN++I   
Sbjct: 367 ELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGY 426

Query: 181 ARNGNLELAFGFLHRLP---------------------------------------NPDT 201
            ++G  E A    H +                                        N DT
Sbjct: 427 CQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDT 486

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           I  N +I+  A+ G I DA+ +  S+   +  SWNSI++ Y    R   AL LF  M   
Sbjct: 487 IVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKS 546

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           D+  ++ TF ++LS       +  G+ L +S ++   +  S+   + ++ +  + G++
Sbjct: 547 DIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRL 604



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 158/320 (49%), Gaps = 27/320 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+ L  +L+A +++ +    +Q+H   +K G+ S +FV  ALM  Y K  ++ ++ ++
Sbjct: 348 PNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEI 407

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   + VSWN++I GY QSG    AL++F E+  + + +   +F+S L AC    S+
Sbjct: 408 FSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSI 467

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +  + IHS I K +     ++ N LID Y KCG + DA+ VF  +++ D++SWNS+I+A 
Sbjct: 468 KHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAY 527

Query: 181 ARNGNLELAFGFLHRLPNPDT----ISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A +G    A     R+   D     +++  +++     G +   + + +SM       P+
Sbjct: 528 ALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPS 587

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  I+       R+ +AL   G++ S   PM                   W  L+ S
Sbjct: 588 MEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPM------------------VWRALLSS 629

Query: 292 CVIKQGLDASIVVASALLDM 311
           CV+ + +      A  +LD+
Sbjct: 630 CVVHKNVALGRYAAEKVLDI 649



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 149/342 (43%), Gaps = 48/342 (14%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYS--LERGVVIANCLIDMYGKCGSVEDAIG 160
           D+Y+    L  C   G  + G A+H+++V+     +     AN L++ Y K G +  A  
Sbjct: 44  DSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARR 103

Query: 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----------------------- 197
           +F  M +++ +S+ +++   A  G  E A     RL                        
Sbjct: 104 LFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDA 163

Query: 198 ----------------NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTG 241
                           + +      +I+  +  G +  A  +   +   ++ +W ++++ 
Sbjct: 164 PGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSC 223

Query: 242 YVNRNRVPE-ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           Y + N +PE AL+ F +M+      + +  ++ L     LS+   G  IH C +K   D 
Sbjct: 224 Y-SENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDT 282

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
              V  ALLDMY+KCG +E A ++F  +   +++ W+ +I+ YA++    +  E+F  L+
Sbjct: 283 EPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMF--LR 340

Query: 361 TVRD-LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            +R  + P+  +   VL AC+  +I F ++ E   ++    G
Sbjct: 341 MMRSFVVPNEFSLSGVLQACA--NIAFLELGEQIHNLAIKLG 380


>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 694

 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 149/472 (31%), Positives = 250/472 (52%), Gaps = 10/472 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV     L+  Y +   + +A ++F  IP  +V +WN ++SGY++     +A  LF E+ 
Sbjct: 228 NVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMP 287

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
                 ++ S+T+ ++A  + G LQ    +  K+   S          L+  Y +   ++
Sbjct: 288 DK----NSISWTTMISALVRGGKLQEAKDLLDKMPFDSF----AAKTALMHGYLQSKMID 339

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           DA  +F  +  +D + WN++I+     G L+ A     ++PN D +S+N +I G A  G 
Sbjct: 340 DARLIFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQ 399

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           +  A+ I   M   N+ SWNS+++G+V      EAL  F  M+      D  T++  LS 
Sbjct: 400 MRKAVGIFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSA 459

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            A L+AL  G   HS + + G        +AL+  Y+KCG++  A  +F  +   ++V+W
Sbjct: 460 CADLAALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMPAPDIVSW 519

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           NA+I GYA NG  T+ I +F +++   D++PD VTF+ VL+ACSH  +  D+  ++F SM
Sbjct: 520 NALIDGYASNGHGTEAISVFREMED-NDVRPDEVTFVGVLSACSHAGL-IDEGFDFFNSM 577

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
           TKDY ++P  EH   M+ L+G+ G +  A  +I+ +       VW A+L A     + ++
Sbjct: 578 TKDYALRPVAEHYACMVDLLGRSGRLSEAFEIIQGMQVQPNAGVWGAMLGACRVHKNHEL 637

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAG 508
           A+++A ++ +LE      YV+L N+    G WD A  MR F++ERG+ K  G
Sbjct: 638 AQLAAEKLYELEPHKTSNYVLLSNITAEAGKWDEAQNMRVFIKERGVHKTPG 689



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 183/389 (47%), Gaps = 44/389 (11%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           N     A++    +   +ADA ++F EIP+ + VSWN++I+     G+   A +LF  + 
Sbjct: 41  NTVSYNAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIAACSDHGRVADARDLFDAMP 100

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
                 D +S+T  ++   + G  +LG+A    + +   ++     N +I  Y K G  +
Sbjct: 101 AR----DGFSWTLMVSCYARAG--ELGLA-RDALDRMPGDKCTACYNAMISGYAKHGRFD 153

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           DA+ +  EM   DIISWNSV+    RNG +  A  F   +P  D +S+N ++ G  + GD
Sbjct: 154 DAVALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFFDEMPARDMVSWNLMLEGYVRAGD 213

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           ++ A  + + +PSPN  SW ++L GY    R+ EA  LF  +  ++V      ++ MLSG
Sbjct: 214 VDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVA----AWNVMLSG 269

Query: 277 IAGLS----------------ALTWGMLIHSCV-------IKQGLDA----SIVVASALL 309
              LS                +++W  +I + V        K  LD     S    +AL+
Sbjct: 270 YLRLSHMEEAYKLFTEMPDKNSISWTTMISALVRGGKLQEAKDLLDKMPFDSFAAKTALM 329

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
             Y +   ++ A  +F  L  ++ V WN MI+GY   G L + + LF+Q+        D 
Sbjct: 330 HGYLQSKMIDDARLIFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPN-----KDM 384

Query: 370 VTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           V++  ++A  +H D    K    F  M +
Sbjct: 385 VSWNTMIAGYAH-DGQMRKAVGIFRKMNQ 412



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 129/282 (45%), Gaps = 49/282 (17%)

Query: 111 LAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI 170
           LA  GQL + +       ++      R  V  N ++    + G + DA  +F E+  ++ 
Sbjct: 21  LARSGQLAAAR-------RLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNT 73

Query: 171 ISWNSVIAAS-------------------------------ARNGNLELAFGFLHRLPNP 199
           +SWN++IAA                                AR G L LA   L R+P  
Sbjct: 74  VSWNAMIAACSDHGRVADARDLFDAMPARDGFSWTLMVSCYARAGELGLARDALDRMPGD 133

Query: 200 D-TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
             T  YN +I+G A+ G  +DA+ +L  MP+P+  SWNS+L G      +  A+  F EM
Sbjct: 134 KCTACYNAMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFFDEM 193

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA-SALLDMYSKCGQ 317
            ++D+     +++ ML G      +  G +  +  +  G+ +  VV+   LL+ Y + G+
Sbjct: 194 PARDM----VSWNLMLEGY-----VRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGR 244

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           +  A  +F  +  +N+  WN M++GY R   + +  +LF ++
Sbjct: 245 IGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEM 286



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 110/216 (50%), Gaps = 5/216 (2%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV 69
           L A +DL      +Q H  + +SG++ + F   AL+  Y K   + +A ++F E+P P +
Sbjct: 457 LSACADLAALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMPAPDI 516

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
           VSWN+LI GY  +G   +A+++F E+E +++  D  +F   L+AC   G +  G    + 
Sbjct: 517 VSWNALIDGYASNGHGTEAISVFREMEDNDVRPDEVTFVGVLSACSHAGLIDEGFDFFNS 576

Query: 130 IVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVF-GEMIDKDIISWNSVIAASARNGNLE 187
           + K Y+L        C++D+ G+ G + +A  +  G  +  +   W +++ A   + N E
Sbjct: 577 MTKDYALRPVAEHYACMVDLLGRSGRLSEAFEIIQGMQVQPNAGVWGAMLGACRVHKNHE 636

Query: 188 ---LAFGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220
              LA   L+ L    T +Y  + N  A+ G  ++A
Sbjct: 637 LAQLAAEKLYELEPHKTSNYVLLSNITAEAGKWDEA 672



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 102/192 (53%), Gaps = 8/192 (4%)

Query: 174 NSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS 233
           N  +   AR+G L  A      +P+ +T+SYN +++ +A+ G I DA  +   +P  N+ 
Sbjct: 15  NQELTRLARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNTV 74

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           SWN+++    +  RV +A  LF  M ++    D ++++ M+S  A    L    L    +
Sbjct: 75  SWNAMIAACSDHGRVADARDLFDAMPAR----DGFSWTLMVSCYARAGELG---LARDAL 127

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
            +   D      +A++  Y+K G+ + A ++ R +   ++++WN+++ G  RNG++ + +
Sbjct: 128 DRMPGDKCTACYNAMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAV 187

Query: 354 ELFEQLKTVRDL 365
           + F+++   RD+
Sbjct: 188 KFFDEMPA-RDM 198


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 164/541 (30%), Positives = 272/541 (50%), Gaps = 46/541 (8%)

Query: 21  YCQQLHCYILKSGFL--SNVFVSTALMGFYRKINSLADAHKMFVEIPQP--SVVSWNSLI 76
           Y  QLH  ++KSG L  S     + L         L  A  +F   P+P  S   +N L+
Sbjct: 31  YLPQLHAALIKSGELTGSPKCFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLM 90

Query: 77  SGYVQSGKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135
              + +G    AL+LFVE L+ + +  D ++   AL +C ++ +L +G  I +  VK  L
Sbjct: 91  RALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGL 150

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFG 191
                + + LI MY  C  V  A  +F  + +  ++ WN++I A  +NGN    +E+  G
Sbjct: 151 MADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKG 210

Query: 192 FLHRLPNPDTISYNEVINGIAQFGDIE--------------------------------- 218
            L      D I+   V+    + GD +                                 
Sbjct: 211 MLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGE 270

Query: 219 --DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
              A  +   M S +  +W+++++GY   ++  EAL LF EMQ  +V  ++ T  ++LS 
Sbjct: 271 LGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSA 330

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            A L AL  G  +HS + ++ L  +I++ +AL+D Y+KCG ++ A   F S+  KN  TW
Sbjct: 331 CAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTW 390

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
            A+I G A NG   + +ELF  ++    ++P  VTF+ VL ACSH+ +  ++   +F+SM
Sbjct: 391 TALIKGMATNGRGREALELFSSMRKA-SIEPTDVTFIGVLMACSHSCL-VEEGRRHFDSM 448

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
           T+DYGIKP  EH   ++ L+G+ G +  A + IR +      V+WRALLS+     ++++
Sbjct: 449 TQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEI 508

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
              +  +++ L       Y++L N+Y S G W  A+++R  M++RG+ K  GCS IE++ 
Sbjct: 509 GEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDG 568

Query: 517 V 517
           V
Sbjct: 569 V 569



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 109/474 (22%), Positives = 205/474 (43%), Gaps = 79/474 (16%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++ +   L++ S +      + +  Y +K G +++ FV ++L+  Y     +A A  +
Sbjct: 117 PDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLL 176

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  VV WN++I+ Y+++G + + + +F  +    +  D  +  S + ACG++G  
Sbjct: 177 FDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDA 236

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +   + +  L R   +   LIDMY KCG +  A  +F  M  +D+++W+++I+  
Sbjct: 237 KLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGY 296

Query: 181 ARNGNLELAFGFLHRL------PNPDTI--------------------SY---------- 204
            +      A      +      PN  T+                    SY          
Sbjct: 297 TQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTI 356

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                +++  A+ G I+DA+    SMP  NS +W +++ G     R  EAL LF  M+  
Sbjct: 357 ILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKA 416

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL--------DASIVVAS----ALL 309
            +   + TF  +L   +           HSC++++G         D  I   +     ++
Sbjct: 417 SIEPTDVTFIGVLMACS-----------HSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVV 465

Query: 310 DMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQ-LKTVRDLQP 367
           D+  + G ++ A    R++    N V W A+++  A    + K +E+ E+ LK +  L P
Sbjct: 466 DLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCA----VHKNVEIGEEALKQIVSLNP 521

Query: 368 ----DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417
               D +   N+ A+         K +       KD GI+ T    CS+I L G
Sbjct: 522 SHSGDYILLSNIYASVGQW-----KNAAMIRKEMKDRGIEKTPG--CSLIELDG 568


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 145/502 (28%), Positives = 259/502 (51%), Gaps = 40/502 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H +++K     + F+ T ++    K   L  A  +F ++ +P+   +N++I  +  +
Sbjct: 31  KSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHN 90

Query: 83  GKYRKALNLFVELER-------SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135
             Y  A+  + E+ R       + I+ D ++F   + +C  L    LG  +H+ + K+  
Sbjct: 91  KVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGP 150

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
           +  + + N LIDMY KC S+ DA  VF  M+++D ISWNS                    
Sbjct: 151 KSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNS-------------------- 190

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
                      +I+G    G +  A  +   MP     SW ++++GY       +AL++F
Sbjct: 191 -----------IISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVF 239

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
            +MQ   V  DE +  ++L   A L AL  G  IH    + GL     + +AL++MYSKC
Sbjct: 240 RQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKC 299

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G +  A  +F  + + ++++W+ MI G A +G   + IELF+++K  + ++P+ +TFL +
Sbjct: 300 GCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAK-IEPNGITFLGL 358

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L+AC+H    +++   YF+SM+KDY I+P VEH   ++ ++G+ G + +A  +I ++   
Sbjct: 359 LSACAHAGF-WNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMK 417

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
               +W +LLS+    S+LD+A I+   + +LE D    YV+L N+Y     WD  S MR
Sbjct: 418 PDSKIWGSLLSSCRTHSNLDIAIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMR 477

Query: 496 NFMRERGLRKEAGCSWIEVENV 517
             ++ + ++K  G S I++ NV
Sbjct: 478 KLIKSKSMKKTPGSSLIDINNV 499



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 152/351 (43%), Gaps = 58/351 (16%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    ++++ S L      +Q+H ++ K G  SN+ +  AL+  Y K  SL DAHK+
Sbjct: 117 PDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKV 176

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEI---------------YADAY 105
           F  + +   +SWNS+ISG+V  G+ RKA  LF  +    I               YADA 
Sbjct: 177 FDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADAL 236

Query: 106 ----------------SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
                           S  S L AC QLG+L++G  IH    +  L R   I N L++MY
Sbjct: 237 YVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMY 296

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYN 205
            KCG +  A  +F +M   D+ISW+++I   A +G    A     R+      P+ I++ 
Sbjct: 297 SKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFL 356

Query: 206 EVINGIAQFGDIEDAIMILSSMPS-----PNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +++  A  G   + +    SM       P    +  ++       R+ +AL +  +M  
Sbjct: 357 GLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKM-- 414

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
              PM                +  WG L+ SC     LD +I+    L ++
Sbjct: 415 ---PMKP-------------DSKIWGSLLSSCRTHSNLDIAIIAMEHLEEL 449



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 107/209 (51%), Gaps = 5/209 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +  +L A + LG     + +H Y  ++G L    +  ALM  Y K   +  A+++
Sbjct: 249 PDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQL 308

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ +  V+SW+++I G    GK R+A+ LF  +++++I  +  +F   L+AC   G  
Sbjct: 309 FDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFW 368

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G+A    + K Y +E  V    CL+D+ G+ G +  A+ V  +M +  D   W S+++
Sbjct: 369 NEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLS 428

Query: 179 ASARNGNLE---LAFGFLHRLPNPDTISY 204
           +   + NL+   +A   L  L   DT +Y
Sbjct: 429 SCRTHSNLDIAIIAMEHLEELEPDDTGNY 457


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 156/499 (31%), Positives = 254/499 (50%), Gaps = 42/499 (8%)

Query: 23  QQLHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           + +HC  LK G ++ +V V  AL+ FY    SLA A  +F E+P   VVSW +L+ GY +
Sbjct: 160 EGVHCVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYAR 219

Query: 82  SGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
            G   +A  +F  +  +  +  +  +  + ++A GQ+G L  G  ++  +    + R V 
Sbjct: 220 RGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVN 279

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           + N LIDM+GK G    A  VF  M  KD+ SW +++                       
Sbjct: 280 LENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMV----------------------- 316

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                   N  A+ GD+E A  +   MP  N+ SW+ ++  Y   N+  EA+ LF  M  
Sbjct: 317 --------NAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIE 368

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA-SIVVASALLDMYSKCGQVE 319
           + V        ++LS  A L  L  G  I+   +  G    ++ + +A +D+Y+KCG  +
Sbjct: 369 EGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFD 428

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F  +  +N+V+WN+MI  +A +G   +V+ LFEQLK    + PD +TFL +L+AC
Sbjct: 429 AASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGT-CIVPDEITFLGLLSAC 487

Query: 380 SHTDIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
           SH+ +    VSE   YF+ M   YGI+P  EH   MI L+G+ G +  A  + + +   +
Sbjct: 488 SHSGL----VSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMET 543

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
               W ALL+A     ++++   +A ++++L      +YV++  +Y S   WD   ++R 
Sbjct: 544 DEAGWGALLNACRMYGNVEIGEFAADKLVQLNPLDSGIYVLMSQIYASKNKWDQVKILRV 603

Query: 497 FMRERGLRKEAGCSWIEVE 515
            MRERG++K  GCS IEV+
Sbjct: 604 LMRERGVKKNPGCSSIEVD 622



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 123/270 (45%), Gaps = 15/270 (5%)

Query: 194 HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP-EAL 252
           HR P    +++      ++    ++ A  IL+   +PN+    +++  ++ R R+P  A 
Sbjct: 68  HRFPASRLLAFC----ALSTPPRVDHAAAILARASAPNAYMLATMMRAFL-RARLPSRAS 122

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAG---LSALTWGMLIHSCVIKQG-LDASIVVASAL 308
            LF  +  + +P D  T    +   A      + + G  +H   +K G +  S++V +AL
Sbjct: 123 ALFRRVIRESLPADARTLVFAIKAAASEHEHHSPSGGEGVHCVALKWGHVAQSVLVGNAL 182

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           +  Y+    +  A ++F  +  +++V+W  ++ GYAR G   +   +F ++     LQP+
Sbjct: 183 VHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPN 242

Query: 369 SVTFLNVLAACSHTD-IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQR 427
            VT + V++A      + F ++   +     D G+  +V    ++I + G+ G    A+ 
Sbjct: 243 EVTLVAVVSAMGQMGLLAFGRMVYRY---VADGGVGRSVNLENALIDMFGKFGCAASARE 299

Query: 428 MIRELGFGSYGVVWRALLSASGACSDLDVA 457
           +   +        W  +++A   C DL+ A
Sbjct: 300 VFDSMAVKDV-YSWTTMVNAYAKCGDLESA 328


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 154/525 (29%), Positives = 269/525 (51%), Gaps = 41/525 (7%)

Query: 32  SGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNL 91
           +GF S++FV +A++  Y K + +A A K+F  + +   V WN+++SG V++  + +A+ +
Sbjct: 135 AGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILI 194

Query: 92  FVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGK 151
           F ++ +  I  D+ +  + L    +L  L LGM I    +K        +   L  +Y K
Sbjct: 195 FGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSK 254

Query: 152 CGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE------------------------ 187
           CG +E A  +FG++   D++S+N++I+    N   E                        
Sbjct: 255 CGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGL 314

Query: 188 ----LAFGFLH-----------RLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
                 FG LH                ++     +    ++  +IE A ++       + 
Sbjct: 315 IPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSL 374

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
           +SWN++++GY       +A+ LF EMQ  +V  +  T +++LS  A L AL+ G  +H  
Sbjct: 375 ASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDL 434

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           + ++  +++I V++AL+DMY+KCG +  A  +F  +  KN VTWNAMI+GY  +G   + 
Sbjct: 435 INRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEA 494

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412
           + LF ++   R + P  VTFL+VL ACSH  +   +  E F SM  D+G +P  EH   M
Sbjct: 495 LNLFNEMLHSR-VSPTGVTFLSVLYACSHAGL-VREGDEIFRSMVHDHGFEPLPEHYACM 552

Query: 413 IRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472
           + L+G+ G + +A   IR++       VW ALL A     D ++AR+++ ++ +L+  + 
Sbjct: 553 VDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNV 612

Query: 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
             YV+L N+Y++  N+  A+ +R  ++ R L K  GC+ IEV N 
Sbjct: 613 GYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANT 657



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/207 (35%), Positives = 120/207 (57%), Gaps = 4/207 (1%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H +  KSG +SN  VSTAL   Y ++N +  A  +F E  + S+ SWN++ISGY Q+G 
Sbjct: 330 IHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGL 389

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
             KA++LF E+++ E+  +  + TS L+AC QLG+L LG  +H  I + S E  + ++  
Sbjct: 390 TEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTA 449

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLPNPD 200
           LIDMY KCGS+ +A  +F  M +K+ ++WN++I+    +G     L L    LH   +P 
Sbjct: 450 LIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPT 509

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSM 227
            +++  V+   +  G + +   I  SM
Sbjct: 510 GVTFLSVLYACSHAGLVREGDEIFRSM 536



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 90/232 (38%), Gaps = 68/232 (29%)

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILS----SMP-SPNSSSW--------------- 235
           +PNPD   YN +I   +       A+ + +    S P  P++ ++               
Sbjct: 68  IPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLL 127

Query: 236 -----------------NSILTGYVNRNRVPEALHLFGEMQSKD---------------- 262
                            ++I+  Y   +RV  A  +F  M  +D                
Sbjct: 128 LHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSC 187

Query: 263 ---------------VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307
                          +  D  T + +L G+A L  L  GM I    +K G  +   V + 
Sbjct: 188 FDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITG 247

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           L  +YSKCG++E A  +F  + + +LV++NAMI+GY  N +    + LF++L
Sbjct: 248 LACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKEL 299


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 146/531 (27%), Positives = 277/531 (52%), Gaps = 43/531 (8%)

Query: 27  CYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYR 86
           C +  S   +NVFVSTAL+  Y K+ +++DA ++F ++P  + VSW +++SGY       
Sbjct: 147 CKLPSSSGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSE 206

Query: 87  KALNLF-VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
           +A  LF + L+   +  + +  T+ L+A      L +G+ +H  ++K  L   V + N L
Sbjct: 207 EAFELFRLMLQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSL 266

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDT 201
           + MY K   ++ A+ VFG   +++ I+W+++I   A+NG  + A     ++ +    P  
Sbjct: 267 VTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTE 326

Query: 202 ISYNEVINGIAQFGDI---------------EDAIMILSSMPSPNSSS------------ 234
            ++  ++N  +  G +               E  + + S++    +              
Sbjct: 327 FTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQ 386

Query: 235 ---------WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
                    W +++TG+V      EAL L+  M  + V     T +++L   A L+AL  
Sbjct: 387 LYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEP 446

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  +H+ ++K G      V +AL  MYSKCG +E +  +FR +  +++++WN++I+G+++
Sbjct: 447 GKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIISGFSQ 506

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
           +G     ++LFE++K +  + PD +TF+NVL ACSH  +  D+   YF +M+KDYG+ P 
Sbjct: 507 HGRGRDALDLFEEMK-LEGIAPDHITFINVLCACSHMGL-VDRGWFYFRAMSKDYGLIPK 564

Query: 406 VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465
           ++H   ++ ++ + G++  A+  I  +       +WR +L A  +  D DV   +  +++
Sbjct: 565 LDHYACIVDILSRAGQLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEQLM 624

Query: 466 KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +L  +    Y++L N+Y +   W+    +R+ MR RG+ K+ GCSW+E+ N
Sbjct: 625 ELGTEDSSAYILLSNIYAAQRKWNDVERVRHLMRLRGVSKDPGCSWVELNN 675



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 190/425 (44%), Gaps = 56/425 (13%)

Query: 8   HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFY----RKINSLADAHKMFVE 63
           HL  A+S +        LH + LKSG  S+  VS +L+ FY    R +  L  A  +F +
Sbjct: 19  HLRCAASSVRTRRAGDALHGWALKSGAASHTPVSNSLITFYCSPPRPL--LGAAFAVFAD 76

Query: 64  IPQ--PSVVSWNSLISGYVQSGKYRKALNLFVELERSE--IYADAYSFTSALAACGQLGS 119
           IP     V SWNSL++  +   +   AL+ F  +  S   +    +SF +   A  ++ S
Sbjct: 77  IPAGLRDVASWNSLLNP-LSRHQPLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPS 135

Query: 120 LQLGMAIHS---KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
              G   H+   K+   S    V ++  L++MY K G++ DA  VF +M  ++ +SW ++
Sbjct: 136 ASAGAVAHAFACKLPSSSGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAM 195

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYNEVI--------------------------NG 210
           ++  A     E AF     +     +  NE +                          +G
Sbjct: 196 VSGYATGKCSEEAFELFRLMLQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDG 255

Query: 211 IAQFGDIED--------------AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
           +  F  +E+              A+ +  S    NS +W++++TGY        A  +F 
Sbjct: 256 LVGFVSVENSLVTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFL 315

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           +M S      E+TF  +L+  + + AL  G   H  ++K G +  + V SAL+DMY+KCG
Sbjct: 316 QMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCG 375

Query: 317 QVEIADSMFRSLCR-KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
               A   F  L    ++V W AMITG+ +NG+  + + L+ ++     + P  +T  +V
Sbjct: 376 CTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDK-EGVMPSYLTVTSV 434

Query: 376 LAACS 380
           L AC+
Sbjct: 435 LRACA 439



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 157/346 (45%), Gaps = 41/346 (11%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QLH  +LK G +  V V  +L+  Y K   +  A  +F    + + ++W+++I+GY Q+G
Sbjct: 246 QLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNG 305

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           +   A  +F+++  +      ++F   L A   +G+L +G   H  +VK   ER V + +
Sbjct: 306 EADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKS 365

Query: 144 CLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
            L+DMY KCG   DA   F ++ D  D++ W ++I    +NG  E A     R+      
Sbjct: 366 ALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVM 425

Query: 199 PDTISYNEVINGIA-----------------------------------QFGDIEDAIMI 223
           P  ++   V+   A                                   + G++ED++++
Sbjct: 426 PSYLTVTSVLRACACLAALEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVV 485

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              MP  +  SWNSI++G+    R  +AL LF EM+ + +  D  TF  +L   + +  +
Sbjct: 486 FRRMPDRDIISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACSHMGLV 545

Query: 284 TWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
             G      + K  GL   +   + ++D+ S+ GQ++ A     S+
Sbjct: 546 DRGWFYFRAMSKDYGLIPKLDHYACIVDILSRAGQLKEAKDFIESI 591



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P E+    +L ASSD+G     +Q H  ++K GF   V+V +AL+  Y K     DA   
Sbjct: 324 PTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDG 383

Query: 61  FVEIPQ-PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F ++     VV W ++I+G+VQ+G++ +AL L+  +++  +     + TS L AC  L +
Sbjct: 384 FHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAA 443

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+ G  +H++I+K     G  +   L  MY KCG++ED++ VF  M D+DIISWNS+I+ 
Sbjct: 444 LEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIISG 503

Query: 180 SARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIE 218
            +++G    A      +      PD I++  V+   +  G ++
Sbjct: 504 FSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACSHMGLVD 546



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 90/181 (49%), Gaps = 2/181 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  +LRA + L      +QLH  ILK GF     V TAL   Y K  +L D+  +
Sbjct: 426 PSYLTVTSVLRACACLAALEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVV 485

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P   ++SWNS+ISG+ Q G+ R AL+LF E++   I  D  +F + L AC  +G +
Sbjct: 486 FRRMPDRDIISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACSHMGLV 545

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G      + K Y L   +    C++D+  + G +++A      + ID     W  V+ 
Sbjct: 546 DRGWFYFRAMSKDYGLIPKLDHYACIVDILSRAGQLKEAKDFIESITIDHGTCLWRIVLG 605

Query: 179 A 179
           A
Sbjct: 606 A 606


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 163/552 (29%), Positives = 270/552 (48%), Gaps = 66/552 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  +L A + L      +QLH YI +  F+SN  V  AL+  YR+   +  A K+
Sbjct: 295 PNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAKI 354

Query: 61  FVEIPQPSV-----------------------------------VSWNSLISGYVQSGKY 85
           F++    +V                                   +SWNS+ISGYV++  +
Sbjct: 355 FLKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMF 414

Query: 86  RKALNLFVELERSE-IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
            +A ++F  +   E I  D+++  S L AC    SL+ G  IH++ +   L+    +   
Sbjct: 415 DEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGA 474

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISY 204
           L++MY KC  +  A   F E+++KD+ +WN++I+   R+  +E     L ++       Y
Sbjct: 475 LVEMYSKCQDLTAAQVAFDEVMEKDVPTWNALISGYTRSNQIERIQYLLEKMKGD---GY 531

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
           +                        PN  +WNSIL G V   ++   + LF EMQ   + 
Sbjct: 532 H------------------------PNIYTWNSILAGLVENRQLDLTMQLFSEMQISKLR 567

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
            D YT   +L   + L+ L  G   H+  IK G D  + + +AL+DMY+KCG ++ A   
Sbjct: 568 PDIYTVGIILPACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVDMYAKCGSLKYAQLA 627

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
           +  +   NLV+ NAM+T  A +G   + I LF+ +  +    PD VTFL+VL++C H   
Sbjct: 628 YDRISNPNLVSHNAMLTACAMHGHGEEGISLFQTMLAL-GFIPDHVTFLSVLSSCVHVG- 685

Query: 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRAL 444
             +   E+F+ M   Y +KPT++H  SM+ L+ + G++  A  +I+++      V+W AL
Sbjct: 686 SVETGCEFFDLMGY-YNVKPTLKHYTSMVDLLSRSGQLHEAYELIKKMPVECDSVLWGAL 744

Query: 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504
           L       ++++  I+A  +I+LE ++   YV+L NL+     W   + +R  M++RG+ 
Sbjct: 745 LGGCVTHGNIELGEIAAERLIELEPNNSGNYVLLANLHAYARRWTDLARVRGMMKDRGMH 804

Query: 505 KEAGCSWIEVEN 516
           K  GCSWIE +N
Sbjct: 805 KSPGCSWIEDKN 816



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 131/456 (28%), Positives = 232/456 (50%), Gaps = 49/456 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H + +K+GF ++ F+ T L+  Y +   L DA  +F  +P  ++ SW +++S Y+  
Sbjct: 79  KQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLFETMPMRNLHSWKAILSVYLDH 138

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G + +A  LF  L+   +  D + F     AC  LGS++LG  +H  ++K+     + ++
Sbjct: 139 GLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNIYVS 198

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
           N LIDMYGKCGS++DA  V  +M ++D ++WNSVI A A NG +  A  FL ++ +    
Sbjct: 199 NALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKSLDYS 258

Query: 199 -PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
            P+ +S++ VI G AQ G  E+AI +L                                 
Sbjct: 259 MPNVVSWSAVIGGFAQNGYDEEAIEMLF-------------------------------R 287

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           MQ + +  +  T + +L   A L  L  G  +H  + +    ++ VV +AL+D+Y +CG 
Sbjct: 288 MQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDVYRRCGD 347

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +  A  +F     KN+++ N MI GY  +GD++K  ELF+ +  V  ++   +++ ++++
Sbjct: 348 MGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMD-VLGIERGLISWNSIIS 406

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKP-------TVEHCCSMIRLMGQKGEVWRAQRMIR 430
                +  FD+    F++M  + GI+P        +  C   I L  ++G+   AQ +++
Sbjct: 407 GYVR-NFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISL--RQGKEIHAQAIVK 463

Query: 431 ELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
             G  S   V  AL+     C DL  A+++  EV++
Sbjct: 464 --GLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVME 497



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 192/412 (46%), Gaps = 65/412 (15%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
           +V   + +A S LG     +QLH  ++K  F  N++VS AL+  Y K  SL DA K+ V+
Sbjct: 161 FVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLVK 220

Query: 64  IPQPSVVSWNSLIS------------------------------------GYVQSGKYRK 87
           +P+   V+WNS+I+                                    G+ Q+G   +
Sbjct: 221 MPERDSVTWNSVITACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEE 280

Query: 88  ALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLID 147
           A+ +   ++   +  +A +    L AC +L  L LG  +H  I ++      V+ N L+D
Sbjct: 281 AIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVD 340

Query: 148 MYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEV 207
           +Y +CG +  A  +F +   K+++S N++I     +G++  A                E+
Sbjct: 341 VYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSKA---------------KEL 385

Query: 208 INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMD 266
            + +   G IE  ++           SWNSI++GYV      EA  +F  M   + +  D
Sbjct: 386 FDCMDVLG-IERGLI-----------SWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPD 433

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
            +T  ++L+  A   +L  G  IH+  I +GL +   V  AL++MYSKC  +  A   F 
Sbjct: 434 SFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFD 493

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            +  K++ TWNA+I+GY R+  + ++  L E++K      P+  T+ ++LA 
Sbjct: 494 EVMEKDVPTWNALISGYTRSNQIERIQYLLEKMKG-DGYHPNIYTWNSILAG 544



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  +H+  IK G DA   + + LL MY++CG ++ AD +F ++  +NL +W A+++ Y  
Sbjct: 78  GKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLFETMPMRNLHSWKAILSVYLD 137

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +G   +   LF+ L+    ++ D   F  V  ACS
Sbjct: 138 HGLFEEAFLLFQVLQ-FDGVELDFFVFPLVFKACS 171


>gi|297826975|ref|XP_002881370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327209|gb|EFH57629.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 156/489 (31%), Positives = 265/489 (54%), Gaps = 23/489 (4%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL 95
            NV   TA++  Y +   L+ A  +F E+P+ ++VSWN++I GY QSG+  KAL LF E+
Sbjct: 107 KNVVTWTAMVSGYLRSKQLSVAETLFQEMPERNIVSWNTMIDGYAQSGRIDKALELFDEM 166

Query: 96  -ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
            ER+ +     S+ + + A  Q G +   M +  ++      + V+    ++D   K G 
Sbjct: 167 PERNTV-----SWNTMIKALVQRGRIDEAMNLFERMPI----KDVISWTAMVDGLAKNGK 217

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQF 214
           V++A  +F  M +++IISWN++I     N  ++ A      +P  D  S+N +I G  + 
Sbjct: 218 VDEARRLFDCMPERNIISWNAMITGYTYNNRIDEADQLFQVMPERDFASWNTMITGFIRN 277

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTM 273
            +I  A  +   MP  N  SW +++TGYV      EAL +F +M +   V  +  T+ ++
Sbjct: 278 REINRACGLFDRMPQKNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPNVGTYVSI 337

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS--LCRK 331
           LS  + L+ L  G  IH  + K     + VV SAL++MYSK G++  A  MF +  +C++
Sbjct: 338 LSACSDLAGLVEGQQIHQLISKSVHQENEVVTSALINMYSKSGELIAARKMFDNGLVCQR 397

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE 391
           +L++WN+MI  YA +G   + IE+++Q++     +P  VT+LN+L ACSH  +  +K  E
Sbjct: 398 DLISWNSMIAVYAHHGHGKEAIEMYDQMRK-HGFKPSEVTYLNLLFACSHAGL-VEKGME 455

Query: 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR----ELGFGSYGVVWRALLSA 447
           +F+ + +D  +    EH   ++ L G+ G +      I      L    YG    A+LSA
Sbjct: 456 FFKELVRDESLPLREEHYTCLVDLCGRAGRLKDVLNFINCDDARLSRSFYG----AILSA 511

Query: 448 SGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEA 507
               S++ +A+    +V++   D    YVM+ N+Y + G  + A+ MR  M+E+GL+K+ 
Sbjct: 512 CNVHSEVSIAKEVVKKVLETGSDDAGTYVMMSNIYAASGKREKAAEMRMKMKEKGLKKQP 571

Query: 508 GCSWIEVEN 516
           GCSW+++ N
Sbjct: 572 GCSWVKIGN 580



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      +L A SDL      QQ+H  I KS    N  V++AL+  Y K   L  A KM
Sbjct: 329 PNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQENEVVTSALINMYSKSGELIAARKM 388

Query: 61  FVE--IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           F    + Q  ++SWNS+I+ Y   G  ++A+ ++ ++ +        ++ + L AC   G
Sbjct: 389 FDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYDQMRKHGFKPSEVTYLNLLFACSHAG 448

Query: 119 SLQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAI 159
            ++ GM    ++V+  SL        CL+D+ G+ G ++D +
Sbjct: 449 LVEKGMEFFKELVRDESLPLREEHYTCLVDLCGRAGRLKDVL 490



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/299 (19%), Positives = 135/299 (45%), Gaps = 24/299 (8%)

Query: 35  LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF-V 93
           + +V   TA++    K   + +A ++F  +P+ +++SWN++I+GY  + +  +A  LF V
Sbjct: 199 IKDVISWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYTYNNRIDEADQLFQV 258

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
             ER     D  S+ + +    +   +     +  ++     ++ V+    +I  Y +  
Sbjct: 259 MPER-----DFASWNTMITGFIRNREINRACGLFDRMP----QKNVISWTAMITGYVENK 309

Query: 154 SVEDAIGVFGEM-----IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEV- 207
             E+A+ VF +M     +  ++ ++ S+++A +    L +    +H+L +      NEV 
Sbjct: 310 ENEEALKVFSKMLRDGCVKPNVGTYVSILSACSDLAGL-VEGQQIHQLISKSVHQENEVV 368

Query: 208 ----INGIAQFGDIEDAIMILSS--MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
               IN  ++ G++  A  +  +  +   +  SWNS++  Y +     EA+ ++ +M+  
Sbjct: 369 TSALINMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYDQMRKH 428

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
                E T+  +L   +    +  GM      V  + L       + L+D+  + G+++
Sbjct: 429 GFKPSEVTYLNLLFACSHAGLVEKGMEFFKELVRDESLPLREEHYTCLVDLCGRAGRLK 487


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 164/545 (30%), Positives = 276/545 (50%), Gaps = 58/545 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H Y L+ G L N F+   L+  Y K+  LA +  +        +V+WN+++S   Q+
Sbjct: 218 KQVHAYGLRKGEL-NSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQN 276

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY-SLERGVVI 141
            ++ +AL    E+    +  D ++ +S L AC  L  L+ G  +H+  +K  SL+    +
Sbjct: 277 EQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 336

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF----------- 190
            + L+DMY  C  V     VF  M D+ I  WN++I   A+N   E A            
Sbjct: 337 GSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAG 396

Query: 191 ----------------------------GFL-HRLPNPDTISYNEVINGIAQFGDIEDAI 221
                                       GF+  R  + D    N +++  ++ G I+ A 
Sbjct: 397 LLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAK 456

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE-----------YTF 270
            I   M   +  +WN+I+TGYV   R  +AL +  +MQ  +    E            T 
Sbjct: 457 RIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITL 516

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
            T+L   A LSAL  G  IH+  IK  L   + V SAL+DMY+KCG ++++  +F  +  
Sbjct: 517 MTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPI 576

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
           +N++TWN ++  Y  +G+    I++  ++  V+ ++P+ VTF++V AACSH+ +  ++  
Sbjct: 577 RNVITWNVIVMAYGMHGNSQDAIDML-RMMMVQGVKPNEVTFISVFAACSHSGM-VNEGL 634

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSAS 448
           + F +M KDYG++P+ +H   ++ L+G+ G V  A ++I  +   F   G  W +LL A 
Sbjct: 635 KIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAG-AWSSLLGAC 693

Query: 449 GACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAG 508
              ++L++  I+A  +I+LE +    YV+L N+Y+S G W  A+ +R  M+ +G+RKE G
Sbjct: 694 RIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPG 753

Query: 509 CSWIE 513
           CSWIE
Sbjct: 754 CSWIE 758



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 202/435 (46%), Gaps = 56/435 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGF-LSNVFVSTALMGFYRKINSLADAHK 59
           P+ +    LL+A +DL      +Q+H ++ K G+ + +V V+  L+  YRK       +K
Sbjct: 91  PDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYK 150

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  I + + VSWNSLIS      K+  AL  F  +   ++   +++  S   AC     
Sbjct: 151 VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNF-P 209

Query: 120 LQLGMAIHSKIVKYSLERGVV---IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           +  G+ +  ++  Y L +G +   I N L+ MYGK G +  +  + G    +D+++WN+V
Sbjct: 210 MPEGLLMGKQVHAYGLRKGELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTV 269

Query: 177 IAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQF----------------GD 216
           +++  +N     A  +L  +      PD  + + V+   +                  G 
Sbjct: 270 LSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGS 329

Query: 217 IED--------------------AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
           +++                       +   M       WN+++TGY       EAL LF 
Sbjct: 330 LDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFI 389

Query: 257 EM-QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
           EM +S  +  +  T + ++       A +    IH  V+K+GLD    V +AL+DMYS+ 
Sbjct: 390 EMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRL 449

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYA---RNGD---LTKVIELFEQLKTVR----DL 365
           G+++IA  +F  +  ++LVTWN +ITGY    R+ D   +   +++ E+  + R     L
Sbjct: 450 GKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSL 509

Query: 366 QPDSVTFLNVLAACS 380
           +P+S+T + +L +C+
Sbjct: 510 KPNSITLMTILPSCA 524



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 96/193 (49%), Gaps = 5/193 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  +L + + L      +++H Y +K+   ++V V +AL+  Y K   L  + K+
Sbjct: 511 PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKV 570

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +IP  +V++WN ++  Y   G  + A+++   +    +  +  +F S  AAC   G +
Sbjct: 571 FDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMV 630

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDA---IGVFGEMIDKDIISWNSV 176
             G+ I   + K Y +E       C++D+ G+ G V++A   I +     DK   +W+S+
Sbjct: 631 NEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDK-AGAWSSL 689

Query: 177 IAASARNGNLELA 189
           + A   + NLE+ 
Sbjct: 690 LGACRIHNNLEIG 702



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 2/152 (1%)

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
           W  +L   V  N + EA+  + +M    +  D + F  +L  +A L  +  G  IH+ V 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 295 KQGLDA-SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
           K G    S+ VA+ L+++Y KCG       +F  +  +N V+WN++I+           +
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 354 ELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
           E F  +    D++P S T ++V  ACS+  +P
Sbjct: 181 EAFRCMLD-EDVEPSSFTLVSVALACSNFPMP 211



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 87/183 (47%), Gaps = 5/183 (2%)

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
           N ++N   + GD      +   +   N  SWNS+++   +  +   AL  F  M  +DV 
Sbjct: 133 NTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVE 192

Query: 265 MDEYTFSTM---LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
              +T  ++    S       L  G  +H+  +++G   S ++ + L+ MY K G++  +
Sbjct: 193 PSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFII-NTLVAMYGKMGKLASS 251

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +  S   ++LVTWN +++   +N    + +E   ++  +  ++PD  T  +VL ACSH
Sbjct: 252 KVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREM-VLEGVEPDGFTISSVLPACSH 310

Query: 382 TDI 384
            ++
Sbjct: 311 LEM 313


>gi|347954478|gb|AEP33739.1| chlororespiratory reduction 21, partial [Matthiola sinuata]
          Length = 794

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 153/525 (29%), Positives = 279/525 (53%), Gaps = 14/525 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +   L AS+++G     +Q H   + +G   +  + T+++ FY K+  +  A  +
Sbjct: 236 PTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMI 295

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  VV+WN LISGYVQ G   +A+ +   + R  +  D  + ++ ++A     +L
Sbjct: 296 FDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNL 355

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  I    +++ LE  +V+A+  +DMY KCGS+ +A  VF   + KD+I WN++++A 
Sbjct: 356 KLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAY 415

Query: 181 ARNG----NLELAFGF-LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PN 231
           A +G     L L +   L  +P P+ I++N +I  + + G + +A  +   M S    PN
Sbjct: 416 ADSGLSGEALRLFYEMQLESVP-PNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPN 474

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SW +++ G V      EA+    +MQ   +  + +T +  LS  A L++L +G  IH 
Sbjct: 475 LISWTTMMNGLVQNGCSEEAILFLRKMQESRLRPNAFTITVALSACANLASLHFGRSIHG 534

Query: 292 CVIK-QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
            +I+ Q    S  + ++L+DMY+KCG +  A+ +F S     L  +NAMI+ YA  G + 
Sbjct: 535 YIIRNQQYSFSASIETSLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYGKVR 594

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + I L+  L+    ++PD++T  ++L+     D+  ++  E F  M   +G+KP +EH  
Sbjct: 595 EAITLYRSLED-GGVKPDNITITSLLSCNYGRDV--NQAIEVFSDMVSKHGMKPCLEHYG 651

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            M+ L+   GE  +A R++ E+ +     + ++L  +       ++    +  +++ E D
Sbjct: 652 LMVDLLASAGETDKALRLMEEMPYKPDARMVQSLFESCSKQHKTELVEYLSKHLLESEPD 711

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           +   YVM+ N Y   G+WD  + MR  M+ +GL+K+ GCSWI+++
Sbjct: 712 NSGNYVMISNAYAVEGSWDEVAKMREMMKVKGLKKKPGCSWIQIK 756



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 218/451 (48%), Gaps = 44/451 (9%)

Query: 23  QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           QQ+H  ILK G  +  N ++ T L+ FY K ++L  A  +F ++   +V SW ++I    
Sbjct: 54  QQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKC 113

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + G    AL  FVE+  + I+ D +   +   ACG L   + G  +H  + K  L   V 
Sbjct: 114 RIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVF 173

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
           +A+ L DMYGKCG ++DA  VF  + D++ ++WN+++    +NG  E A   L  +    
Sbjct: 174 VASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEG 233

Query: 197 --PNPDTISY---------------------------------NEVINGIAQFGDIEDAI 221
             P   T+S                                    ++N   + G IE A 
Sbjct: 234 IEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAE 293

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           MI   M   +  +WN +++GYV +  V EA+++   M+ +++  D  T ST++S      
Sbjct: 294 MIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQ 353

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  I    I+ GL++ IV+AS  +DMY+KCG +  A  +F S  +K+L+ WN +++
Sbjct: 354 NLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLS 413

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            YA +G   + + LF +++ +  + P+ +T+ N++      +   ++  E F  M +  G
Sbjct: 414 AYADSGLSGEALRLFYEMQ-LESVPPNVITW-NLIILSLLRNGQVNEAKEMFLQM-QSSG 470

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
           I P +    +M+  + Q G    A   +R++
Sbjct: 471 IFPNLISWTTMMNGLVQNGCSEEAILFLRKM 501



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 213/480 (44%), Gaps = 87/480 (18%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +V+ ++ +A   L W  + + +H Y+ K+G    VFV+++L   Y K   L DA K+
Sbjct: 135 PDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKV 194

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP  + V+WN+L+ GYVQ+G   +A+ L  E+ +  I     + ++ L+A   +G +
Sbjct: 195 FDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGI 254

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G   H+  +   LE   ++   +++ Y K G +E A  +F  MI+KD+++WN +I+  
Sbjct: 255 EEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLISGY 314

Query: 181 ARNGNLELAFGF--LHRLPN-------------------------------------PDT 201
            + G +E A     L R  N                                      D 
Sbjct: 315 VQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDI 374

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           +  +  ++  A+ G I +A  +  S    +   WN++L+ Y +     EAL LF EMQ +
Sbjct: 375 VLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLE 434

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            VP +                +TW ++I S +                    + GQV  A
Sbjct: 435 SVPPN---------------VITWNLIILSLL--------------------RNGQVNEA 459

Query: 322 DSMFRSLCRK----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
             MF  +       NL++W  M+ G  +NG   + I    +++  R L+P++ T    L+
Sbjct: 460 KEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQESR-LRPNAFTITVALS 518

Query: 378 ACSH-TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
           AC++   + F +    +    + Y    ++E   S++ +  + G++ +A+R+     FGS
Sbjct: 519 ACANLASLHFGRSIHGYIIRNQQYSFSASIE--TSLVDMYAKCGDINKAERV-----FGS 571



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 184/418 (44%), Gaps = 45/418 (10%)

Query: 71  SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKI 130
           S+   +S   ++G+ R+AL+L  E++   I      +   L  C     L  G  IH++I
Sbjct: 1   SYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQI 60

Query: 131 VKYS--LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
           +K      R   I   L+  Y KC ++E A  +F ++  +++ SW ++I    R G  E 
Sbjct: 61  LKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEG 120

Query: 189 AF-GFLHRLPN---PDTISYNEVINGIAQF------------------------------ 214
           A  GF+  L N   PD      V                                     
Sbjct: 121 ALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLAD 180

Query: 215 -----GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
                G ++DA  +   +P  N+ +WN+++ GYV      EA+ L  EM+ + +     T
Sbjct: 181 MYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVT 240

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
            ST LS  A +  +  G   H+  I  GL+   ++ +++L+ Y K G +E A+ +F  + 
Sbjct: 241 VSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMI 300

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389
            K++VTWN +I+GY + G + + I +  QL    +L+ D VT   +++A + T     K+
Sbjct: 301 EKDVVTWNLLISGYVQQGLVEEAIYMC-QLMRRENLKFDCVTLSTLMSAATSTQNL--KL 357

Query: 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
            +  +     +G++  +    + + +  + G +  A+++  +       ++W  LLSA
Sbjct: 358 GKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVF-DSTVQKDLILWNTLLSA 414


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 166/554 (29%), Positives = 270/554 (48%), Gaps = 41/554 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N Y    +L+  ++L    + ++LH  +LK G   N+    AL+  Y +   +  A ++F
Sbjct: 264 NSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNI-QCNALLVMYARCGWVDSALRVF 322

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            EI     +SWNS++S YVQ+  Y +A++ F E+ ++    D     S L+A G LG L 
Sbjct: 323 REIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLI 382

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  +H+  VK  L+  + IAN L+DMY KC SVE +  VF  M  KD +SW ++IA  A
Sbjct: 383 NGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYA 442

Query: 182 RNGNLELAFGFLHRLPNP--------------------------------------DTIS 203
           ++     A G                                              D I 
Sbjct: 443 QSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLIL 502

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
            N +I+   + G++  A+ I   +   +  +W S++  +     + EA+ LFG+M +  +
Sbjct: 503 KNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGI 562

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             D      +L  IAGLS+LT G  IH  +I+        V S+L+DMYS CG +  A  
Sbjct: 563 QPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALK 622

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F     K++V W AMI     +G   + I +F+++     + PD V+FL +L ACSH+ 
Sbjct: 623 VFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLET-GVSPDHVSFLALLYACSHSK 681

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
           +  D+   Y + M   Y ++P  EH   ++ L+G+ G+   A + I+ +      VVW A
Sbjct: 682 L-VDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCA 740

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           LL A     + ++A I+  ++++LE D+   YV++ N++   G W+    +R  M E+GL
Sbjct: 741 LLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGL 800

Query: 504 RKEAGCSWIEVENV 517
           RK+  CSWIE+ N 
Sbjct: 801 RKDPACSWIEIGNT 814



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 117/404 (28%), Positives = 191/404 (47%), Gaps = 47/404 (11%)

Query: 23  QQLHCYILKSGFLSN---VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79
           +QLH + + +G L +    F++T L+  Y K   L DAH++F  +P  +V SWN+LI   
Sbjct: 75  RQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGAC 134

Query: 80  VQSGKYRKALNLFVELERSEIYA----DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135
           + SG   +A+ ++  +  SE  A    D  +  S L ACG  G  + G  +H   VK  L
Sbjct: 135 LSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGL 194

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIAASARNGNLELAFGFLH 194
           +R  ++AN L+ MY KCG ++ A+ VF  M D +D+ SWNS I+   +NG    A     
Sbjct: 195 DRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFR 254

Query: 195 RLPNP-------DTISYNEVINGIAQF-------------------------------GD 216
           R+ +         T+   +V   +AQ                                G 
Sbjct: 255 RMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLVMYARCGW 314

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           ++ A+ +   +   +  SWNS+L+ YV      EA+  FGEM       D     ++LS 
Sbjct: 315 VDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSA 374

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
           +  L  L  G  +H+  +KQ LD+ + +A+ L+DMY KC  VE +  +F  +  K+ V+W
Sbjct: 375 VGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSW 434

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             +I  YA++   ++ I  F   +    ++ D +   ++L ACS
Sbjct: 435 TTIIACYAQSSRYSEAIGKFRTAQK-EGIKVDPMMMGSILEACS 477



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 198/418 (47%), Gaps = 43/418 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L+A    G      ++H   +KSG   +  V+ AL+G Y K   L  A ++
Sbjct: 161 PDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRV 220

Query: 61  FVEIPQ-PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F  +     V SWNS ISG VQ+G + +AL+LF  ++      ++Y+    L  C +L  
Sbjct: 221 FEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQ 280

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L  G  +H+ ++K   E  +   N L+ MY +CG V+ A+ VF E+ DKD ISWNS+++ 
Sbjct: 281 LNHGRELHAALLKCGTEFNIQ-CNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSC 339

Query: 180 SARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFG-------------------- 215
             +N     A  F   +     NPD      +++ +   G                    
Sbjct: 340 YVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSD 399

Query: 216 ---------------DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                           +E +  +   M   +  SW +I+  Y   +R  EA+  F   Q 
Sbjct: 400 LQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQK 459

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           + + +D     ++L   +GL +++    +HS  I+ GL   +++ + ++D+Y +CG+V  
Sbjct: 460 EGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCY 518

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           A ++F  L +K++VTW +M+  +A NG L + + LF ++     +QPDSV  + +L A
Sbjct: 519 ALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNA-GIQPDSVALVGILGA 575



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 176/394 (44%), Gaps = 26/394 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL A   LG     +++H Y +K    S++ ++  LM  Y K  S+  + ++
Sbjct: 363 PDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARV 422

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     VSW ++I+ Y QS +Y +A+  F   ++  I  D     S L AC  L S+
Sbjct: 423 FDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSI 482

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIAA 179
            L   +HS  ++  L   +++ N +ID+YG+CG V  A+ +F EM+D KDI++W S++  
Sbjct: 483 SLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIF-EMLDKKDIVTWTSMVNC 540

Query: 180 SARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIED-----AIMILSSMPSP 230
            A NG L  A     ++ N    PD+++   ++  IA    +         +I    P  
Sbjct: 541 FAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVE 600

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
            +   +S++  Y     +  AL +F E + KDV +    ++ M++           + I 
Sbjct: 601 GAVV-SSLVDMYSGCGSMNYALKVFDEAKCKDVVL----WTAMINATGMHGHGKQAIYIF 655

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK-NLVTWN----AMITGYAR 345
             +++ G+    V   ALL   S    V+        +  K  L  W      ++    R
Sbjct: 656 KRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGR 715

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           +G   +  +  + +     L+P SV +  +L AC
Sbjct: 716 SGQTEEAYKFIKSMP----LEPKSVVWCALLGAC 745



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 46/285 (16%)

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
           +A  L+ MYGKCG + DA  +F  M  + + SWN++I A   +G    A G    +    
Sbjct: 95  LATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASE 154

Query: 197 ----PNPD-----------------------------------TISYNEVINGIAQFGDI 217
                 PD                                   T+  N ++   A+ G +
Sbjct: 155 PVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLL 214

Query: 218 EDAIMILSSM-PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           + A+ +   M    + +SWNS ++G V      EAL LF  MQS    M+ YT   +L  
Sbjct: 215 DSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQV 274

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            A L+ L  G  +H+ ++K G + +I   +ALL MY++CG V+ A  +FR +  K+ ++W
Sbjct: 275 CAELAQLNHGRELHAALLKCGTEFNI-QCNALLVMYARCGWVDSALRVFREIGDKDYISW 333

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           N+M++ Y +N    + I+ F ++       PD    +++L+A  H
Sbjct: 334 NSMLSCYVQNRLYAEAIDFFGEM-VQNGFNPDHACIVSLLSAVGH 377



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 120/237 (50%), Gaps = 10/237 (4%)

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD----VPMDEYTF 270
           G + DA  +   MP+    SWN+++   ++     EA+ ++  M++ +       D  T 
Sbjct: 107 GRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTL 166

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
           +++L           G  +H   +K GLD S +VA+AL+ MY+KCG ++ A  +F  +  
Sbjct: 167 ASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRD 226

Query: 331 -KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389
            +++ +WN+ I+G  +NG   + ++LF ++++      +S T + VL  C+      +  
Sbjct: 227 GRDVASWNSAISGCVQNGMFLEALDLFRRMQS-DGFSMNSYTTVGVLQVCAEL-AQLNHG 284

Query: 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
            E   ++ K  G +  ++ C +++ +  + G V  A R+ RE+G   Y + W ++LS
Sbjct: 285 RELHAALLK-CGTEFNIQ-CNALLVMYARCGWVDSALRVFREIGDKDY-ISWNSMLS 338



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 8/122 (6%)

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL---DASIVVASALLDMYSKCGQVEI 320
           P D Y +  +L  +A   A++ G  +H+  +  G    D +  +A+ LL MY KCG++  
Sbjct: 54  PTDHYGW--VLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPD 111

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT---VRDLQPDSVTFLNVLA 377
           A  +F  +  + + +WNA+I     +G   + + ++  ++    V    PD  T  +VL 
Sbjct: 112 AHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLK 171

Query: 378 AC 379
           AC
Sbjct: 172 AC 173


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 142/500 (28%), Positives = 254/500 (50%), Gaps = 38/500 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H +I+K     + F+ T ++           A+ +F  +  P+   +N++I  Y  +
Sbjct: 31  KKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHN 90

Query: 83  GKYRKALNLFVEL-----ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER 137
             Y  A+ ++ ++       + I+ D ++F   + +C  L    LG  +H  + K+  + 
Sbjct: 91  KVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKS 150

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
             V+ N L++MY KC S++DA  VF EM ++D +SWN++                     
Sbjct: 151 NTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTL--------------------- 189

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
                     I+G  + G +  A  I   M      SW +I++GY       +AL  F  
Sbjct: 190 ----------ISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRR 239

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           MQ   +  DE +  ++L   A L AL  G  IH    K G   +I V +AL++MY+KCG 
Sbjct: 240 MQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGS 299

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           ++    +F  +  +++++W+ MI G A +G   + IELF++++  + ++P  +TF+ +L 
Sbjct: 300 IDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAK-IEPSIITFVGLLT 358

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           AC+H  +  ++   YFESM +DY I+P VEH   ++ L+G  G + +A  +++++     
Sbjct: 359 ACAHAGL-LNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPD 417

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497
             +W +LLS+  +  +L +A I+   +++LE      YV+L NLY   G WD  S MR  
Sbjct: 418 SPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKL 477

Query: 498 MRERGLRKEAGCSWIEVENV 517
           MR + ++K  GCS IEV+N+
Sbjct: 478 MRSKSMKKTPGCSSIEVDNM 497



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 158/352 (44%), Gaps = 60/352 (17%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    ++++ + L      +Q+H ++ K G  SN  V  +L+  Y K +SL DAH++
Sbjct: 115 PDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRV 174

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEI---------------YADAY 105
           F E+ +   VSWN+LISG+V+ G+ R+A  +F E++   I               YADA 
Sbjct: 175 FEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADAL 234

Query: 106 SF----------------TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
            F                 S L  C QLG+L+LG  IH    K    R + + N LI+MY
Sbjct: 235 EFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMY 294

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYN 205
            KCGS++    +F +M ++D+ISW+++I   A +G    A      +      P  I++ 
Sbjct: 295 AKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFV 354

Query: 206 EVINGIAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            ++   A  G + + +    SM       P    +  ++       R+ +AL L  +M  
Sbjct: 355 GLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPR 414

Query: 261 K-DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           K D P+                   WG L+ SC     L  +++    LL++
Sbjct: 415 KPDSPI-------------------WGSLLSSCRSHGNLKIAVIAMEHLLEL 447


>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
 gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
          Length = 531

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 152/502 (30%), Positives = 260/502 (51%), Gaps = 14/502 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKIN---SLADAHKMFVEIPQPSVVSWNSLISGY 79
           +Q+H  ++  GFLS+      L+ F   +      A A  +F  IP P    +N+LI G 
Sbjct: 25  KQVHALMVLRGFLSDPSALRELI-FASSVGVRGGTAHARLVFDRIPHPDRFMYNTLIRGA 83

Query: 80  VQSGKYRKALNLFVELERSE------IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY 133
             S   R A++++  + R        +  D  +F   L AC  +G+ + G  +H+ +VK 
Sbjct: 84  AHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASETGAQVHAHVVKA 143

Query: 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL 193
             E    + N LI M+  CG +  A  +F     +D ++W+++I+  AR G++  A    
Sbjct: 144 GCESDAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELF 203

Query: 194 HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
              P  D +S+N +I   A+ GD+  A  +    P  +  SWN++++GYV      +A+ 
Sbjct: 204 DESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAME 263

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ--GLDASIVVASALLDM 311
           LF +MQ+     D  T  ++LS  A    +  G  +H  +  +   +  S V+ +AL+DM
Sbjct: 264 LFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLGNALIDM 323

Query: 312 YSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371
           Y+KCG +  A  +F  +  KN+ TWN++I G A +G +T+ I++F+++    +++PD +T
Sbjct: 324 YAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQ-GNVKPDEIT 382

Query: 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431
           F+ VL ACSH  +  DK  EYF  M + Y I+P V+H   M+ ++ + G +  A   I  
Sbjct: 383 FVAVLVACSHGGM-VDKGHEYFNLMQQRYMIEPNVKHYGCMVDMLSRAGLLKEAFEFIGT 441

Query: 432 LGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA 491
           +      V+WR LL A     +L++A  +  E++K   D+   +V+L N+Y S G W  +
Sbjct: 442 MKIEPNPVIWRTLLGACRIHGELELAEHANQELLKARSDASGDFVLLSNIYASVGEWLGS 501

Query: 492 SVMRNFMRERGLRKEAGCSWIE 513
             MR  M + G+ KEAGC+ ++
Sbjct: 502 ENMRKLMDDSGVNKEAGCAVVD 523



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 183/392 (46%), Gaps = 23/392 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++     +LRA + +G      Q+H +++K+G  S+ FV  AL+G +     L  A  +
Sbjct: 112 PDKRTFPFVLRACAAMGASETGAQVHAHVVKAGCESDAFVRNALIGMHATCGDLGAAAAL 171

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +   V+W+++ISG+ + G    A  LF E        D  S+   + A  +LG  
Sbjct: 172 FDGEAREDAVAWSAMISGFARRGDIGAARELFDE----SPVKDLVSWNVMITAYAKLGD- 226

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI----DKDIISWNSV 176
              MA   ++   + +R VV  N +I  Y +CGS + A+ +F +M       D ++  S+
Sbjct: 227 ---MAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSL 283

Query: 177 IAASARNGNLELAFGFLHRLPN-------PDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           ++A A +G+++ A   LHR  +       P T+  N +I+  A+ G +  A+ +   M  
Sbjct: 284 LSACADSGDMD-AGRRLHRFLSGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFWLMQD 342

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            N S+WNSI+ G      V EA+ +F +M   +V  DE TF  +L   +    +  G   
Sbjct: 343 KNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVKPDEITFVAVLVACSHGGMVDKGHEY 402

Query: 290 HSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNG 347
            + + ++  ++ ++     ++DM S+ G ++ A     ++    N V W  ++     +G
Sbjct: 403 FNLMQQRYMIEPNVKHYGCMVDMLSRAGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHG 462

Query: 348 DLTKVIELFEQLKTVR-DLQPDSVTFLNVLAA 378
           +L       ++L   R D   D V   N+ A+
Sbjct: 463 ELELAEHANQELLKARSDASGDFVLLSNIYAS 494


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 150/502 (29%), Positives = 264/502 (52%), Gaps = 37/502 (7%)

Query: 16  LGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSL 75
           LGW    +QLH  +++S    + +V++AL+  Y K  S  +A ++F  +   + VSW  L
Sbjct: 286 LGWG---KQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVL 342

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135
           I G +Q   + K++ LF ++    +  D ++  + ++ C     L LG  +HS  +K   
Sbjct: 343 IGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGH 402

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
            R +V++N LI +Y KCG +++A  VF  M ++                           
Sbjct: 403 NRAIVVSNSLISLYAKCGDLQNAEFVFSSMSER--------------------------- 435

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
               D +S+  +I   +Q G+I  A      M + N+ +WN++L  Y+      + L ++
Sbjct: 436 ----DIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMY 491

Query: 256 GEMQS-KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
             M S KDV  D  T+ T+  G A + A   G  I    +K GL  ++ VA+A + MYSK
Sbjct: 492 SAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSK 551

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG++  A  +F  L  K++V+WNAMITGY+++G   +  + F+ + + +  +PD ++++ 
Sbjct: 552 CGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLS-KGAKPDYISYVA 610

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           VL+ CSH+ +   +   YF+ MT+ +GI P +EH   M+ L+G+ G +  A+ +I ++  
Sbjct: 611 VLSGCSHSGL-VQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPM 669

Query: 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494
                VW ALLSA     + ++A ++A  V +L+      Y++L  +Y+  G  D ++ +
Sbjct: 670 KPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQV 729

Query: 495 RNFMRERGLRKEAGCSWIEVEN 516
           R  MR++G++K  G SW+EVEN
Sbjct: 730 RKLMRDKGIKKNPGYSWMEVEN 751



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/572 (21%), Positives = 241/572 (42%), Gaps = 137/572 (23%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF-VEIPQPS 68
           LR+    G     + LH  ++  G  S VF+   L+  Y    +L+DA ++   +I +P+
Sbjct: 11  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPN 70

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYA-------------------------- 102
           V++ N +++GY + G    A  LF  + R ++ +                          
Sbjct: 71  VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHR 130

Query: 103 ------DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG--- 153
                 +A++F   + +CG LG  +L   +     K+       +   L+DM+ +CG   
Sbjct: 131 SGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVD 190

Query: 154 ----------------------------SVEDAIGVFGEMIDKDIISWNSVIAASARNGN 185
                                        ++ AI  F +M ++D++SWN +IAA +++G 
Sbjct: 191 FASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGR 250

Query: 186 LELAFGF---LHR------------------------------------LPNPDTISYNE 206
           +  A G    +HR                                    LP  D    + 
Sbjct: 251 VREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASA 310

Query: 207 VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
           +I   A+ G  ++A  + +S+   NS SW  ++ G +      +++ LF +M+++ + +D
Sbjct: 311 LIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAID 370

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
           ++  +T++SG      L  G  +HS  +K G + +IVV+++L+ +Y+KCG ++ A+ +F 
Sbjct: 371 QFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFS 430

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT------------------------- 361
           S+  +++V+W +MIT Y++ G++ K  E F+ + T                         
Sbjct: 431 SMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKM 490

Query: 362 ------VRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415
                  +D+ PD VT++ +   C+  DI  +K+ +     T   G+   V    + I +
Sbjct: 491 YSAMLSQKDVTPDWVTYVTLFRGCA--DIGANKLGDQIIGHTVKAGLILNVSVANAAITM 548

Query: 416 MGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
             + G +  AQ++   L  G   V W A+++ 
Sbjct: 549 YSKCGRISEAQKLFDLLN-GKDVVSWNAMITG 579



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 123/278 (44%), Gaps = 36/278 (12%)

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
           +   AL +CG  G+L    A+H ++V   L   V + N L+  Y  CG++ DA      +
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDA----RRL 61

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILS 225
           +  DI                            P+ I++N ++NG A+ G + DA  +  
Sbjct: 62  LRADI--------------------------KEPNVITHNIMMNGYAKQGSLSDAEELFD 95

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLSALT 284
            MP  + +SWN++++GY    R  + L  F  M +S D   + +TF  ++     L    
Sbjct: 96  RMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRE 155

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
               +     K        V +AL+DM+ +CG V+ A  +F  + R  +   N+M+ GYA
Sbjct: 156 LAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYA 215

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           +   +   IE FE +      + D V++  ++AA S +
Sbjct: 216 KLYGIDHAIEYFEDMA-----ERDVVSWNMMIAALSQS 248



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 113/232 (48%), Gaps = 5/232 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      L R  +D+G +    Q+  + +K+G + NV V+ A +  Y K   +++A K+
Sbjct: 502 PDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKL 561

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VVSWN++I+GY Q G  ++A   F ++       D  S+ + L+ C   G +
Sbjct: 562 FDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLV 621

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNSVIA 178
           Q G      + + + +  G+   +C++D+ G+ G + +A  +  +M  K     W ++++
Sbjct: 622 QEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLS 681

Query: 179 ASARNGN---LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           A   +GN    ELA   +  L +PD+ SY  +    +  G  +D+  +   M
Sbjct: 682 ACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLM 733


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 164/555 (29%), Positives = 285/555 (51%), Gaps = 45/555 (8%)

Query: 2   NEYVLFHLLRA--SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           N +VL  +L+   + D    T C  +H    K G   N FV ++L+  Y    +++ A  
Sbjct: 149 NHFVLTTILKVLVAMDAPGLTCC--IHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARC 206

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  I     V+W +++S Y ++     ALN F ++  +    + +  TS L A   L S
Sbjct: 207 VFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSS 266

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
             LG  IH   VK   +    +   L+DMY KCG +EDA  VF  +   D+I W+ +I+ 
Sbjct: 267 AVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISR 326

Query: 180 SARNGNLELAFGFLHRL------PNPDTISY----------------------------- 204
            A++   E AF    R+      PN  ++S                              
Sbjct: 327 YAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESE 386

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +++  A+  ++E+++ I  S+   N  SWN+I+ GY       +AL +F EM++
Sbjct: 387 LFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRA 446

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             V   + TFS++L   A  +++   + IHS + K   +   +V ++L+D Y+KCG +  
Sbjct: 447 AHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRD 506

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F S+ + ++V+WNA+I+GYA +G  T  +ELF ++    D +P+ VTF+ +L+ C 
Sbjct: 507 ALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNK-SDTKPNDVTFVALLSVCG 565

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
            T +    +S  F SMT D+ IKP+++H   ++RL+G+ G +  A + I ++      +V
Sbjct: 566 STGLVNQGLS-LFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMV 624

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           WRALLS+     ++ + + SA +V+++E   +  YV+L N+Y + G  D  +++R  MR 
Sbjct: 625 WRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRN 684

Query: 501 RGLRKEAGCSWIEVE 515
            G++KE G SW+E++
Sbjct: 685 IGVKKEVGLSWVEIK 699



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 194/401 (48%), Gaps = 42/401 (10%)

Query: 23  QQLHCYILKSGFLS--NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           + +H  +++ G ++  + F +  L+  Y K+  LA A ++F  +P+ ++VS+ +L+ GY 
Sbjct: 67  RAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYA 126

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
             G + +A  LF  L+R     + +  T+ L     + +  L   IH+   K   +R   
Sbjct: 127 LRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAF 186

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
           + + LID Y  CG+V  A  VF  +I KD ++W ++++  + N   E A     ++    
Sbjct: 187 VGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAG 246

Query: 197 --PNP-------------------------------DTISY--NEVINGIAQFGDIEDAI 221
             PNP                               DT  +    +++  A+ G IEDA 
Sbjct: 247 AKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDAR 306

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   +P  +   W+ +++ Y    +  +A  +F  M    V  +E++ S +L   A ++
Sbjct: 307 TVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVA 366

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  IH+ VIK G ++ + V +AL+D+Y+KC  +E +  +FRSL   N V+WN +I 
Sbjct: 367 FLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIV 426

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           GY ++G     + +F++++    L    VTF +VL AC++T
Sbjct: 427 GYCQSGFAEDALSVFQEMRAAHVLS-TQVTFSSVLRACANT 466



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 159/320 (49%), Gaps = 27/320 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+ L  +L+A +++ +    QQ+H  ++K G+ S +FV  ALM  Y K  ++ ++ ++
Sbjct: 350 PNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEI 409

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   + VSWN++I GY QSG    AL++F E+  + + +   +F+S L AC    S+
Sbjct: 410 FRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASI 469

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +  + IHS I K +     ++ N LID Y KCG + DA+ VF  +I  D++SWN++I+  
Sbjct: 470 KHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGY 529

Query: 181 ARNGNLELAFGFLHRLPNPDT----ISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A +G    A    +R+   DT    +++  +++     G +   + + +SM       P+
Sbjct: 530 ALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPS 589

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  I+       R+ +AL   G++ S   PM                   W  L+ S
Sbjct: 590 MDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPM------------------VWRALLSS 631

Query: 292 CVIKQGLDASIVVASALLDM 311
           CV+ + +      A  +L++
Sbjct: 632 CVVHKNVALGKFSAEKVLEI 651



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 165/361 (45%), Gaps = 40/361 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +VL  +L+A+  L      + +H   +K+   +   V  AL+  Y K   + DA  +
Sbjct: 249 PNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTV 308

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP   V+ W+ LIS Y QS +  +A  +F+ + RS +  + +S +  L AC  +  L
Sbjct: 309 FEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFL 368

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IH+ ++K   E  + + N L+D+Y KC ++E+++ +F  + D + +SWN++I   
Sbjct: 369 DLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGY 428

Query: 181 ARNGNLELAFGFLHRLP---------------------------------------NPDT 201
            ++G  E A      +                                        N DT
Sbjct: 429 CQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDT 488

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           I  N +I+  A+ G I DA+ +  S+   +  SWN+I++GY    R  +AL LF  M   
Sbjct: 489 IVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKS 548

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           D   ++ TF  +LS       +  G+ L +S  +   +  S+   + ++ +  + G++  
Sbjct: 549 DTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLND 608

Query: 321 A 321
           A
Sbjct: 609 A 609



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 146/322 (45%), Gaps = 46/322 (14%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYS--LERGVVIANCLIDMYGKCGSVEDAIG 160
           D+Y+    L  C   G  + G A+H+++V+     +     AN L+++Y K G +  A  
Sbjct: 46  DSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARR 105

Query: 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----------------------- 197
           +F  M +++++S+ +++   A  G  E A G   RL                        
Sbjct: 106 LFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDA 165

Query: 198 ----------------NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTG 241
                           + +    + +I+  +  G +  A  +   +   ++ +W ++++ 
Sbjct: 166 PGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSC 225

Query: 242 YVNRNRVPE-ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           Y + N +PE AL+ F +M+      + +  +++L     LS+   G  IH C +K   D 
Sbjct: 226 Y-SENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDT 284

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
              V  ALLDMY+KCG +E A ++F  +   +++ W+ +I+ YA++    +  E+F  L+
Sbjct: 285 EPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMF--LR 342

Query: 361 TVR-DLQPDSVTFLNVLAACSH 381
            +R  + P+  +   VL AC++
Sbjct: 343 MMRSSVVPNEFSLSGVLQACAN 364


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  254 bits (650), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 140/523 (26%), Positives = 277/523 (52%), Gaps = 31/523 (5%)

Query: 20  TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79
           ++ +Q H   +K     +V+     +G   +  ++  A ++F E+P    VSWNS+I+GY
Sbjct: 29  SFNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGY 88

Query: 80  VQSGKYRKALNLF------------------VELERSEIYADAYSFTSALAA--CGQLGS 119
            ++G + ++  LF                  +E ER +   +A+ +  A+         +
Sbjct: 89  WKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERID---EAWQYFQAMPQRNTASWNA 145

Query: 120 LQLGMAIHSKIVKYSL------ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISW 173
           +  G+  + ++ + S        R V+    ++D Y K G +E A  +F  M  K+++SW
Sbjct: 146 MISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSW 205

Query: 174 NSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS 233
             +I+    NG  + A     ++P+ + ++   +I G  + G  + A ++   +P  + +
Sbjct: 206 TVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLA 265

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           SWN+++TGY       EAL L  +M    +  D  T  ++L+  + L++L  G   H  V
Sbjct: 266 SWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLV 325

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
           +K G ++ I + +AL+ MY KCG +  ++  FR +   ++V+WNAMI  +AR+G   + +
Sbjct: 326 LKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRAL 385

Query: 354 ELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMI 413
             F ++++ R ++PD +TFL++L+AC H     + ++ +F SM + Y I P  EH   ++
Sbjct: 386 ASFGEMRSNR-VEPDGITFLSLLSACGHAGKVHESLN-WFNSMIESYKIVPRPEHFACLV 443

Query: 414 RLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY 473
            ++ + G+V +A ++I+E+ F +   +W ALL+A     ++ +  ++A ++++LE  +  
Sbjct: 444 DILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSG 503

Query: 474 VYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            YV+L N+Y + G W   + +R  MRE+G++K+   SW+E++N
Sbjct: 504 AYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDN 546



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L A S L      ++ H  +LKSG+ S + +  AL+  Y K  S+ D+   
Sbjct: 297 PDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELA 356

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +I  P VVSWN++I+ + + G Y +AL  F E+  + +  D  +F S L+ACG  G +
Sbjct: 357 FRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKV 416

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
              +   +S I  Y +        CL+D+  + G VE A  +  EM  + D   W +++A
Sbjct: 417 HESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLA 476

Query: 179 ASARNGNLELA 189
           A   + N++L 
Sbjct: 477 ACHVHLNVKLG 487


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 155/540 (28%), Positives = 272/540 (50%), Gaps = 50/540 (9%)

Query: 23  QQLHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           Q LH  IL++  L  ++ + TAL+  Y +   L  A K F E+ + ++V+WN+LI+GY +
Sbjct: 78  QLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSR 137

Query: 82  SGKYRKALNLFVELERSE---IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
           +G +R AL ++ ++       +  DA +F+SAL AC  +G +  G  I ++ V       
Sbjct: 138 NGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASD 197

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL-- 196
            ++ N LI+MY KCGS+E A  VF  + ++D+I+WN++I+  A+ G    A     R+  
Sbjct: 198 SIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGP 257

Query: 197 --PNPDTISYNEVINGIAQFGD------------------------------------IE 218
             P P+ +++  ++       D                                    +E
Sbjct: 258 NDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLE 317

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
           +A  +   M + +  +WN ++  YV   +  +AL +F +MQ ++V  +E T S +LS  A
Sbjct: 318 EARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACA 377

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            L A   G  +H+ +      A +V+ ++L++MY++CG ++    +F ++  K+LV+W+ 
Sbjct: 378 VLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWST 437

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           +I  YA++G     +E F +L     L  D VT ++ L+ACSH  +  + V + F SM  
Sbjct: 438 LIAAYAQHGHSRTGLEHFWELLQ-EGLAADDVTMVSTLSACSHGGMLKEGV-QTFLSMVG 495

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           D+G+ P   H   M+ L+ + G +  A+ +I ++ F    V W +LLS     +D   A 
Sbjct: 496 DHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAA 555

Query: 459 ISAAEVIKLEGDSDYVYV-MLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
             A ++ +LE + ++  V +L N+Y   G WD     RN    R  RK  GCS+IE+ + 
Sbjct: 556 RVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRN---RRAARKNPGCSYIEINDT 612



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 186/378 (49%), Gaps = 45/378 (11%)

Query: 47  FYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYS 106
            Y K  S+ADA  +F  I  P+ VSW  +++ + ++G YR+AL  +  +    +  D   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYS-LERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
           F  A+  C     L+ G  +H+ I++   LE  +++   LI MY +C  +E A   F EM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 166 IDKDIISWNSVIAASARNGN----LELAFGFLHRLP---NPDTISY-------------- 204
             K +++WN++IA  +RNG+    L++    + + P    PD I++              
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 205 ---------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYV 243
                                N +IN  ++ G +E A  +   + + +  +WN++++GY 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV 303
            +    +AL LF  M   D   +  TF  +L+    L  L  G  IH  V + G ++ +V
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLV 300

Query: 304 VASALLDMYSKC-GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
           + + LL+MY+KC   +E A  +F  +  ++++TWN +I  Y + G     +++F+Q++ +
Sbjct: 301 IGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQ-L 359

Query: 363 RDLQPDSVTFLNVLAACS 380
            ++ P+ +T  NVL+AC+
Sbjct: 360 ENVAPNEITLSNVLSACA 377



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 180/401 (44%), Gaps = 42/401 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+       L A + +G  +  +++    + SG+ S+  V  AL+  Y K  SL  A K+
Sbjct: 161 PDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKV 220

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    V++WN++ISGY + G   +AL LF  +  ++   +  +F   L AC  L  L
Sbjct: 221 FDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDL 280

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKC-GSVEDAIGVFGEMIDKDIISWNSVIAA 179
           + G AIH K+ +   E  +VI N L++MY KC  S+E+A  VF  M  +D+I+WN +I A
Sbjct: 281 EQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVA 340

Query: 180 SARNGNLELAFGFLHRL------PNPDTIS------------------------------ 203
             + G  + A     ++      PN  T+S                              
Sbjct: 341 YVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKAD 400

Query: 204 ---YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N ++N   + G ++D + + +++   +  SW++++  Y         L  F E+  
Sbjct: 401 VVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQ 460

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIH-SCVIKQGLDASIVVASALLDMYSKCGQVE 319
           + +  D+ T  + LS  +    L  G+    S V   GL         ++D+ S+ G++E
Sbjct: 461 EGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLE 520

Query: 320 IADSMFRSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            A+++   +    + V W ++++G   + D  +   + ++L
Sbjct: 521 AAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKL 561



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 134/279 (48%), Gaps = 44/279 (15%)

Query: 148 MYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF--------------- 192
           MYGKCGSV DA+ VF  +   + +SW  ++AA ARNG+   A G+               
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 193 -------------------LH------RLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
                              LH      RL   D I    +I   A+  D+E A      M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD---VPMDEYTFSTMLSGIAGLSALT 284
                 +WN+++ GY        AL ++ +M SK    +  D  TFS+ L     +  ++
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  I +  +  G  +  +V +AL++MYSKCG +E A  +F  L  ++++ WN MI+GYA
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           + G  T+ +ELF+++    D +P+ VTF+ +L AC++ +
Sbjct: 241 KQGAATQALELFQRMGP-NDPKPNVVTFIGLLTACTNLE 278



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 161/323 (49%), Gaps = 51/323 (15%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINS-LADAHK 59
           PN      LL A ++L      + +H  + + G+ S++ +   L+  Y K +S L +A +
Sbjct: 262 PNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQ 321

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  +    V++WN LI  YVQ G+ + AL++F +++   +  +  + ++ L+AC  LG+
Sbjct: 322 VFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGA 381

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            + G A+H+ I     +  VV+ N L++MY +CGS++D +GVF  + DK ++SW+++IAA
Sbjct: 382 KRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAA 441

Query: 180 SARNGN----LELAFGFL-------------------------------------HRLPN 198
            A++G+    LE  +  L                                     H L  
Sbjct: 442 YAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLA- 500

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPS-PNSSSWNSILTG---YVNRNRVPEALHL 254
           PD   +  +++ +++ G +E A  ++  MP  P++ +W S+L+G   + +  R       
Sbjct: 501 PDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADK 560

Query: 255 FGEMQSKDVPMDEYTFSTMLSGI 277
             E++S+    DE++  T+LS +
Sbjct: 561 LFELESE----DEHSTVTLLSNV 579


>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
 gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
          Length = 638

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 163/579 (28%), Positives = 279/579 (48%), Gaps = 91/579 (15%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVS----------- 71
            Q+H  I+K+G+L N  ++T ++     +NS++  HK  VE  +    +           
Sbjct: 31  NQVHARIIKTGYLKNSSLTTKII-----LNSISSPHKPLVEFARYVFFTRYAVQRIRRNH 85

Query: 72  -------WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
                  WN++I  Y    +  +AL LF  +  +    D +SF+  L AC ++  ++ G 
Sbjct: 86  LDDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVEEGK 145

Query: 125 AIHSKIVKYSLERGVVIANCL-------------------------------IDMYGKCG 153
            IH  ++K  +   + + NCL                               ID Y K G
Sbjct: 146 QIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSG 205

Query: 154 SVE------------------------------DAIGV----FGEMIDKDIISWNSVIAA 179
           +++                              D IG+    F +M ++D++SWN++I  
Sbjct: 206 TIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMPERDLVSWNTIIGG 265

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
            A+ G +E A    +R+P  D IS++ +I+G A+ GDI+ A  +   MP  +  ++N+I+
Sbjct: 266 FAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIM 325

Query: 240 TGYVNRNRVPEALHLFGEMQSK-DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
            GY       EAL +F EMQ + ++  DE T    LS I+ L  +     +H+  ++ G+
Sbjct: 326 AGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMHNYFLENGI 385

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
             +  VA AL+DMYSKCG +E A  +F  + +K +  WNAMI+G ARNG       +  +
Sbjct: 386 SVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGLGKLAFGMLLE 445

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           +  +  ++PD +TF+ VL AC+H  +  + +   FE M K + ++P ++H   M+ ++G+
Sbjct: 446 MHRL-SVKPDGITFIGVLNACAHAGLVKEGLI-CFELMRKVHKLEPKLQHYGCMVDILGK 503

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G V  A + I E+      ++WR LLSA     +  +  + A  ++ ++  +   YV+L
Sbjct: 504 AGLVEGALKFIEEMPIEPNDIIWRTLLSACQNHENFTIGELIAKHLMTMDSCNSSSYVLL 563

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
            N+Y   G W  AS +R  M+++ L K  GCSWIE+E V
Sbjct: 564 SNIYARLGLWSAASKVRMMMKKQNLTKVPGCSWIELEGV 602



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 5/220 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  L   L A S LG       +H Y L++G      V+ AL+  Y K  S+ +A  +
Sbjct: 352 PDETTLVVALSAISQLGHVEKAASMHNYFLENGISVTGKVAVALIDMYSKCGSIENAILI 411

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + Q  +  WN++ISG  ++G  + A  + +E+ R  +  D  +F   L AC   G +
Sbjct: 412 FDGVDQKGIDHWNAMISGMARNGLGKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLV 471

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G+     + K + LE  +    C++D+ GK G VE A+    EM I+ + I W ++++
Sbjct: 472 KEGLICFELMRKVHKLEPKLQHYGCMVDILGKAGLVEGALKFIEEMPIEPNDIIWRTLLS 531

Query: 179 ASARNGNL---ELAFGFLHRLPNPDTISYNEVINGIAQFG 215
           A   + N    EL    L  + + ++ SY  + N  A+ G
Sbjct: 532 ACQNHENFTIGELIAKHLMTMDSCNSSSYVLLSNIYARLG 571


>gi|242056803|ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
 gi|241929522|gb|EES02667.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
          Length = 762

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 162/539 (30%), Positives = 277/539 (51%), Gaps = 42/539 (7%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           LH  + K GF ++V V   L+  Y K   +A A ++F+E+P    +++N++I G  + G+
Sbjct: 155 LHPVVTKLGFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGR 214

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           + +AL LF  + R  +    ++F+S L     +  L LG  IH   V+ +    V + N 
Sbjct: 215 HGEALELFAAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVRANPSCNVFVNNA 274

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA--RNGNLEL-------AFGFLHR 195
           L+D Y KC S+ D   +F EM ++D +S+N +I+A +  R G + L         GF  R
Sbjct: 275 LLDFYSKCDSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMALQLFRDMQTLGFDRR 334

Query: 196 -LPNPDTISY-----------------------------NEVINGIAQFGDIEDAIMILS 225
            LP    +S                              N +I+  ++ G ++ A  I +
Sbjct: 335 TLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFA 394

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
                 + SW +++TG V   +  EAL LF +M+   +  D  T S+++   + L+ +  
Sbjct: 395 YKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGI 454

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  +H+ + K G   S+   SALLDMY+KCG ++ A   F  +  KN +TWNA+I+ YA+
Sbjct: 455 GRQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQ 514

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
            G     I +F+ +     L PD VTFL+VLAAC H  +  ++  +YF+ M   Y + P 
Sbjct: 515 YGQAKNAIRMFDSMLHC-GLCPDPVTFLSVLAACGHNGLA-EECMKYFDLMRYYYSMSPW 572

Query: 406 VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465
            EH   +I  +G+ G   + Q++I E+ F    ++W ++L +     + D+A ++A ++ 
Sbjct: 573 KEHYSCVIDTLGRAGCFDKIQKVIDEMPFEDDPIIWSSILHSCRIYGNQDLATVAAEKLF 632

Query: 466 KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV-ENVAAHSSN 523
            +       YV+L N+Y   GNW+ A+ ++  MR+RG++KE+G SW+E+ + +   SSN
Sbjct: 633 TMVPTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGVKKESGNSWVEIKQKIYMFSSN 691



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 133/298 (44%), Gaps = 27/298 (9%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  ++  G     FV  AL+  Y K   L  A  +F      + +SW +LI+G VQ+
Sbjct: 355 RQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFAYKSDKTAISWTALITGCVQN 414

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+  +AL LF ++ R+ +  D  + +S + +   L  + +G  +H+ + K      V   
Sbjct: 415 GQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGIGRQLHAYLTKSGHMPSVFSG 474

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF----GFLHRLPN 198
           + L+DMY KCG +++AI  F EM +K+ I+WN+VI+A A+ G  + A       LH    
Sbjct: 475 SALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGLC 534

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALH 253
           PD +++  V+      G  E+ +     M      SP    ++ ++          +   
Sbjct: 535 PDPVTFLSVLAACGHNGLAEECMKYFDLMRYYYSMSPWKEHYSCVIDTLGRAGCFDKIQK 594

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           +  EM  +D P                  + W  ++HSC I    D + V A  L  M
Sbjct: 595 VIDEMPFEDDP------------------IIWSSILHSCRIYGNQDLATVAAEKLFTM 634



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 12/227 (5%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH Y+ KSG + +VF  +AL+  Y K   L +A + F E+P+ + ++WN++IS Y Q 
Sbjct: 456 RQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQY 515

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKI-VKYSLERGVVI 141
           G+ + A+ +F  +    +  D  +F S LAACG  G  +  M     +   YS+      
Sbjct: 516 GQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYFDLMRYYYSMSPWKEH 575

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
            +C+ID  G+ G  +    V  EM  + D I W+S++ +    GN +LA     +L    
Sbjct: 576 YSCVIDTLGRAGCFDKIQKVIDEMPFEDDPIIWSSILHSCRIYGNQDLATVAAEKLFTMV 635

Query: 197 PNPDTISYNEVINGIAQFGDIEDA-----IMILSSMPSPNSSSWNSI 238
           P  D  +Y  + N  A+ G+ E A     IM    +   + +SW  I
Sbjct: 636 PT-DATAYVILSNIYAKAGNWEGAARVKKIMRDRGVKKESGNSWVEI 681


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 157/555 (28%), Positives = 269/555 (48%), Gaps = 71/555 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ ++L    ++   L      + LH     SG   + FV+++L+  Y ++ +  +A  +
Sbjct: 18  PDPHLLPTAFKSCPTL---PLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARAL 74

Query: 61  FVEIP--------------------------------------QPSVVSWNSLISGYVQS 82
           F  +P                                      +P+V++WN L+SG  +S
Sbjct: 75  FDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRS 134

Query: 83  GKYRKALNLFVELE-RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           G+ R A+     +     +  DA   + AL+A G +G + +G  +H   VK        +
Sbjct: 135 GRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACV 194

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
              LIDMYGKCG   + + VF E    D+ S N++IA  +RN                  
Sbjct: 195 VTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNA----------------- 237

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
               +V   +  F +  D  + L      N  SW SI+   V   +  EA+  F EMQ++
Sbjct: 238 ----QVCEALRLFKEFVDRGVEL------NVVSWTSIVACCVQNGKDLEAVEFFREMQAQ 287

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
               +  T   +L   A ++AL  G   H   +++G    + V+SAL+DMY+KCG+V+ A
Sbjct: 288 GTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDA 347

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F ++  +N+V+WNAMI GYA  G+    + +F  +   +  +PD VTF  +LAAC+ 
Sbjct: 348 RIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQ-KPDMVTFTCLLAACTQ 406

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  ++   YF+ M  +YG+ P +EH   M+ L+G+ G++  A  +I ++ F     +W
Sbjct: 407 AGLT-EEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIW 465

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            +LL +     ++D+A ++A ++  LE ++   YV+L N+Y S   WD  + +R  M++ 
Sbjct: 466 GSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDV 525

Query: 502 GLRKEAGCSWIEVEN 516
           GL+KE GCSWIE++N
Sbjct: 526 GLKKEKGCSWIEIKN 540


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 153/535 (28%), Positives = 266/535 (49%), Gaps = 48/535 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            Q+   I+  G   N +V+ + +    ++  +  A ++F +  QP+  +WN++  GY Q+
Sbjct: 39  HQIQAQIVTHGLEGNDYVTPSFITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQA 98

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
             +   + LF  + R+    + ++F   + +C    + + G  +H  + K   +    + 
Sbjct: 99  NCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVG 158

Query: 143 NCLIDMYGKCGSV--EDAIGVFGEMIDKDIISWNSVIAA--------SARN--------- 183
             LI MY   G V   DA  VF EM DK++ +W +++AA        SAR          
Sbjct: 159 CALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRD 218

Query: 184 --------------GNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
                         G++  A     R+P+ D +S+N V++G A  G++E  + +   MP 
Sbjct: 219 VVLWNVVVSGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPV 278

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEM------QSKD------VPMDEYTFSTMLSGI 277
            N  SWN ++ GYV      EAL  F  M      + K+      VP D YT   +L+  
Sbjct: 279 RNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPND-YTVVAVLTAC 337

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
           + L  L  G  +H      G   ++ V +AL+DMY+KCG +E A  +F  L  K+++TWN
Sbjct: 338 SRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWN 397

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397
            +I G A +G +   + LFE++K   + +PD VTF+ +L+AC+H  +  + +  +F+SM 
Sbjct: 398 TIINGLAMHGHVADALSLFERMKRAGE-RPDGVTFVGILSACTHMGLVRNGLL-HFQSMV 455

Query: 398 KDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
            DY I P +EH   M+ L+G+ G + +A  ++R++      V+W ALL A     ++++A
Sbjct: 456 DDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLGACRMYKNVEMA 515

Query: 458 RISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
            ++   +I+LE ++   +VM+ N+Y   G     + ++  MR+ G RK  GCS I
Sbjct: 516 ELALQRLIELEPNNPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVI 570



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 102/198 (51%), Gaps = 2/198 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+Y +  +L A S LG     + +H Y    G+  N+FV  AL+  Y K   +  A  +
Sbjct: 325 PNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDV 384

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    +++WN++I+G    G    AL+LF  ++R+    D  +F   L+AC  +G +
Sbjct: 385 FDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLV 444

Query: 121 QLG-MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G +   S +  YS+   +    C++D+ G+ G ++ A+ +  +M ++ D + W +++ 
Sbjct: 445 RNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLG 504

Query: 179 ASARNGNLELAFGFLHRL 196
           A     N+E+A   L RL
Sbjct: 505 ACRMYKNVEMAELALQRL 522


>gi|242094978|ref|XP_002437979.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
 gi|241916202|gb|EER89346.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
          Length = 657

 Score =  254 bits (649), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 159/519 (30%), Positives = 269/519 (51%), Gaps = 47/519 (9%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + LH   + +G+ ++ FV++AL   Y K++ + DA K+F  +P P  + WN+L++G   S
Sbjct: 134 RTLHGLSVAAGYAADTFVASALAKLYFKLSKVDDARKVFDAVPSPDTILWNTLLAGLPGS 193

Query: 83  GKYRKALNLFVEL-ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
                AL  FV + E   +  D+ +  S+L A  +   + +G  +H   VK  L     +
Sbjct: 194 ----VALEAFVRMVEVGRVRPDSTTLASSLRAAAEASHVAMGRCVHGYGVKCGLAEHEHV 249

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP---- 197
              L+ +Y KCG ++ A  +F  M D D++++N++I+  + NG +E +      L     
Sbjct: 250 VTGLMSLYSKCGDMDCARSLFDRMEDPDLVAYNALISGYSVNGMVESSVELFKELAASDW 309

Query: 198 NPDTISYNEVINGIAQFG-----------------------------------DIEDAIM 222
            P++ +   VI   + FG                                   D+E A  
Sbjct: 310 RPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARS 369

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           I  +MP     SWN++++GY        A+ LF  MQ  +V  +  T S+ LS  A L A
Sbjct: 370 IFDAMPEKTMESWNAMISGYAQNGLTEMAVELFQLMQELNVQPNPTTISSTLSACAQLGA 429

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L+ G  +H  + K+ L+ ++ V +AL+DMY+KCG +  A S+F  +  KN+V+WNAMI+G
Sbjct: 430 LSLGTWVHRIIAKENLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISG 489

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           Y  +G   + ++L++ +     L P S TFL+VL ACSH  +  D+  + F  MT +Y I
Sbjct: 490 YGLHGRGAEALKLYKSMLDACIL-PTSSTFLSVLYACSHGGL-VDEGQKVFRVMTNEYRI 547

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV-VWRALLSASGACSDLDVARISA 461
            P +EHC  M+ L+G+ G++  A  +I E    + G  VW ALLSA     + D+A++++
Sbjct: 548 SPGIEHCTCMVDLLGRAGKLNEALDLISEFPQSAIGPGVWGALLSACMVHKNSDLAKLAS 607

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
            ++ +L+ ++   YV+L NLYTS  ++  A+V +  + E
Sbjct: 608 QKLFELDSENAGYYVLLSNLYTSKKHYSEAAVGQYLLIE 646



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 160/323 (49%), Gaps = 26/323 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  ++   S  G +   + LH +++K+   ++  VSTAL   Y ++N +  A  +
Sbjct: 311 PNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSI 370

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+ ++ SWN++ISGY Q+G    A+ LF  ++   +  +  + +S L+AC QLG+L
Sbjct: 371 FDAMPEKTMESWNAMISGYAQNGLTEMAVELFQLMQELNVQPNPTTISSTLSACAQLGAL 430

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  +H  I K +LE  V +   LIDMY KCGS+ +A  +F  M +K+++SWN++I+  
Sbjct: 431 SLGTWVHRIIAKENLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGY 490

Query: 181 ARNGN----LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
             +G     L+L    L     P + ++  V+   +  G +++   +   M      SP 
Sbjct: 491 GLHGRGAEALKLYKSMLDACILPTSSTFLSVLYACSHGGLVDEGQKVFRVMTNEYRISPG 550

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
                 ++       ++ EAL L          + E+  S +  G+       WG L+ +
Sbjct: 551 IEHCTCMVDLLGRAGKLNEALDL----------ISEFPQSAIGPGV-------WGALLSA 593

Query: 292 CVIKQGLDASIVVASALLDMYSK 314
           C++ +  D + + +  L ++ S+
Sbjct: 594 CMVHKNSDLAKLASQKLFELDSE 616



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 175/403 (43%), Gaps = 46/403 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L   LRA+++       + +H Y +K G   +  V T LM  Y K   +  A  +
Sbjct: 210 PDSTTLASSLRAAAEASHVAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDCARSL 269

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +  P +V++N+LISGY  +G    ++ LF EL  S+   ++ +  + +      G  
Sbjct: 270 FDRMEDPDLVAYNALISGYSVNGMVESSVELFKELAASDWRPNSSTLVAVIPVYSPFGHE 329

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            L   +H+ +VK  L+   +++  L  +Y +   +E A  +F  M +K + SWN++I+  
Sbjct: 330 LLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMPEKTMESWNAMISGY 389

Query: 181 ARNGNLELA---FGFLHRL---PNPDTIS------------------------------- 203
           A+NG  E+A   F  +  L   PNP TIS                               
Sbjct: 390 AQNGLTEMAVELFQLMQELNVQPNPTTISSTLSACAQLGALSLGTWVHRIIAKENLELNV 449

Query: 204 --YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                +I+  A+ G I +A  I   M + N  SWN++++GY    R  EAL L+  M   
Sbjct: 450 YVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGRGAEALKLYKSMLDA 509

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEI 320
            +     TF ++L   +    +  G  +   +  +  +   I   + ++D+  + G++  
Sbjct: 510 CILPTSSTFLSVLYACSHGGLVDEGQKVFRVMTNEYRISPGIEHCTCMVDLLGRAGKLNE 569

Query: 321 ADSMFRSLCRKNL--VTWNAMITG--YARNGDLTKVI--ELFE 357
           A  +     +  +    W A+++     +N DL K+   +LFE
Sbjct: 570 ALDLISEFPQSAIGPGVWGALLSACMVHKNSDLAKLASQKLFE 612


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  254 bits (649), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 159/556 (28%), Positives = 272/556 (48%), Gaps = 43/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      LL   +DL       Q H  I+K G   N  V   L+  Y K   L  A ++
Sbjct: 138 PDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRL 197

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F+E+     VS+N +I+GY  +G   +A+ LFVE++        ++F + ++A   L   
Sbjct: 198 FLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDT 257

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH  +VK S  R V + N  +D Y K   V +   +F EM + D +S+N +I A 
Sbjct: 258 AFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAY 317

Query: 181 ARNGNL--------ELAFGFLHR-------------------------------LPNPDT 201
           A  G +        EL F    R                               + +PD 
Sbjct: 318 AWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDF 377

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +++  A+ G  E+A  I   + S ++  W ++++  V R      L LF EM+  
Sbjct: 378 RVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRA 437

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           +V  D+ TF+ +L   A L+++  G  +HSCVI+ G   ++    ALLDMY+ C  ++ A
Sbjct: 438 NVSADQATFACVLKASANLASILLGKQLHSCVIRSGF-MNVYSGCALLDMYANCASIKDA 496

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F  +  +N+VTWNA+++ YA+NGD    ++ FE++  +   QPDSV+FL +L ACSH
Sbjct: 497 IKTFEEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEM-IMSGYQPDSVSFLCILTACSH 555

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  ++  +YF  M+  Y + P  EH  +M+  + + G    A++++ ++ F    +VW
Sbjct: 556 CRL-VEEGLKYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVW 614

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYV-YVMLCNLYTSHGNWDVASVMRNFMRE 500
            ++L++     +  +AR +A ++  ++   D   YV + N++   G WD    ++  MR+
Sbjct: 615 TSVLNSCRIHKNYALARKAAGQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRD 674

Query: 501 RGLRKEAGCSWIEVEN 516
           RG+RK    SW+E+++
Sbjct: 675 RGVRKLPAYSWVEIKH 690



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 170/384 (44%), Gaps = 40/384 (10%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           N F    ++  Y K  +L  A ++F +  + +VV+W ++I  Y +S ++  A  LF E+ 
Sbjct: 73  NSFSIDIIISGYVKSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMH 132

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           RS    D  ++ + L  C  L   +     H++IVK        + N L+D Y K G ++
Sbjct: 133 RSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLD 192

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVI---- 208
            A  +F EM   D +S+N +I   A NG  E A      + N    P   ++  VI    
Sbjct: 193 SARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASV 252

Query: 209 ---------------------------NGIAQFGDIEDAI----MILSSMPSPNSSSWNS 237
                                      N    F    D +     + + MP  +  S+N 
Sbjct: 253 GLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNV 312

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           I+T Y    +V E++ LF E+Q        + F TMLS  A    L  G  +H+ V+   
Sbjct: 313 IITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSM 372

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
            D    V+++L+DMY+KCG+ E AD +F  L  ++ V W AMI+   + G     ++LF 
Sbjct: 373 ADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFY 432

Query: 358 QLKTVRDLQPDSVTFLNVLAACSH 381
           +++   ++  D  TF  VL A ++
Sbjct: 433 EMRRA-NVSADQATFACVLKASAN 455



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 158/365 (43%), Gaps = 46/365 (12%)

Query: 173 WNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           +N +I   +  G L  A   L ++PN ++ S + +I+G  + G++  A  I         
Sbjct: 46  FNFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIFDDTDERTV 105

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
            +W +++  Y   NR  +A  LF EM       D  T+ T+L+G   L         H+ 
Sbjct: 106 VAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQ 165

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           ++K G   +  V + LLD Y K G ++ A  +F  +C  + V++N MITGYA NG   + 
Sbjct: 166 IVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEA 225

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTD---------------------------IP 385
           IELF +++ +   +P   TF  V++A    D                           + 
Sbjct: 226 IELFVEMQNL-GFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLD 284

Query: 386 F-------DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY- 437
           F       ++V + F  M +  G+   V     +I      G+V  +  + +EL F ++ 
Sbjct: 285 FYSKHDCVNEVRKLFNEMPELDGVSYNV-----IITAYAWVGKVKESIDLFQELQFTTFD 339

Query: 438 --GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY-VYVMLCNLYTSHGNWDVASVM 494
                +  +LS + +  DL + R   A+V+    D D+ V   L ++Y   G ++ A   
Sbjct: 340 RKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEAD-- 397

Query: 495 RNFMR 499
           R F+R
Sbjct: 398 RIFLR 402


>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  254 bits (649), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 152/557 (27%), Positives = 273/557 (49%), Gaps = 79/557 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++Y L  +LRA S L      + +HCY +K    +N+FV+T L+  Y K   L +A  +
Sbjct: 132 PSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYL 191

Query: 61  FVEIP-QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F  +P + + V W ++++GY Q+G+  KA+  F E+    + ++ ++F S L AC  + +
Sbjct: 192 FFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISA 251

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
              G  +H  I+       V + + L+DMY KCG +  A  +   M   D++ WNS+I  
Sbjct: 252 YAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVG 311

Query: 180 SARNGNLELAFGFLHRLPNPD--------------------------------------- 200
              +G +E A    H++ N D                                       
Sbjct: 312 CVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDAC 371

Query: 201 -TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
            T+S N +++  A+ G++  A+ + + +   +  SW S++TGYV+     +AL LF +M+
Sbjct: 372 KTVS-NALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMR 430

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           +  V +D++  + + S  A L+ + +G  +H+  IK    + +   ++L+ MY+KCG +E
Sbjct: 431 TARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLE 490

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +  S+  +N+++W A+I GYA+NG       L E  ++                  
Sbjct: 491 DAIRVXDSMETRNVISWTAIIVGYAQNG-------LVETGQS------------------ 525

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
                       YFESM K YGIKP  +    MI L+G+ G++  A+ ++  +       
Sbjct: 526 ------------YFESMEKVYGIKPASDRYACMIDLLGRAGKINEAEHLLNRMDVEPDAT 573

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W++LLSA     +L++   +   +IKLE  +   YV+L N+++  G W+ A+ +R  M+
Sbjct: 574 IWKSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMK 633

Query: 500 ERGLRKEAGCSWIEVEN 516
             G+ +E G SWIE+++
Sbjct: 634 TMGIXQEPGYSWIEMKS 650



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 187/386 (48%), Gaps = 42/386 (10%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD 103
           ++  Y  + +L +A K+F E P  + ++W+SL+SGY ++G   + L  F ++        
Sbjct: 74  MISAYANLGNLVEARKLFNETPIXNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPS 133

Query: 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
            Y+  S L AC  L  L  G  IH   +K  LE  + +A  L+DMY KC  + +A  +F 
Sbjct: 134 QYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFF 193

Query: 164 EMID-KDIISWNSVIAASARNGNLELAFGFLHRLPN------------------------ 198
            + D K+ + W +++   A+NG    A      + N                        
Sbjct: 194 SLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYA 253

Query: 199 ---------------PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYV 243
                          P+    + +++  A+ GD+  A MIL +M   +   WNS++ G V
Sbjct: 254 FGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCV 313

Query: 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV 303
               + EAL LF +M ++D+ +D++T+ ++L  +A    L  G  +HS  IK G DA   
Sbjct: 314 THGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKT 373

Query: 304 VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363
           V++AL+DMY+K G +  A  +F  +  K++++W +++TGY  NG   K ++LF  ++T R
Sbjct: 374 VSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTAR 433

Query: 364 DLQPDSVTFLNVLAACSH-TDIPFDK 388
            +  D      V +AC+  T I F +
Sbjct: 434 -VDLDQFVVACVFSACAELTVIEFGR 458



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 122/208 (58%), Gaps = 2/208 (0%)

Query: 174 NSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS 233
           N +++  ++NG ++ A     ++P  D  ++N +I+  A  G++ +A  + +  P  NS 
Sbjct: 41  NQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIXNSI 100

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           +W+S+++GY       E L  F +M S      +YT  ++L   + LS L  G +IH   
Sbjct: 101 TWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYA 160

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC-RKNLVTWNAMITGYARNGDLTKV 352
           IK  L+A+I VA+ L+DMYSKC  +  A+ +F SL  RKN V W AM+TGYA+NG+  K 
Sbjct: 161 IKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKA 220

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACS 380
           I+ F++++  + ++ +  TF ++L AC+
Sbjct: 221 IQCFKEMRN-QGMESNHFTFPSILTACT 247



 Score = 38.5 bits (88), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
           ++ LL   SK G+V+ A  +F  +  ++  TWN MI+ YA  G+L +  +LF +
Sbjct: 40  SNQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNE 93


>gi|297851320|ref|XP_002893541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339383|gb|EFH69800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 520

 Score =  254 bits (649), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 154/496 (31%), Positives = 269/496 (54%), Gaps = 40/496 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q++H  I+K+GF+ ++ +S  L+  + K   L+ A ++F E+P+P++ ++N +ISGY++ 
Sbjct: 54  QKIHADIIKTGFIPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKH 113

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS-----LQLGMAIHSKIVKYSLER 137
           G  ++ L L   +  S   AD Y+ +  L A   LGS       L   +H++I+K  +E 
Sbjct: 114 GFLKELLLLVQWISYSGEKADGYTLSMVLKASNSLGSNMLMPRSLCRLVHARIIKCDVEL 173

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
             V+   L+D Y K G +E A  VF  M D++++   S+I+            G++++  
Sbjct: 174 DDVLITALVDAYVKSGKLESARTVFETMKDENVVCCTSMIS------------GYMNQ-- 219

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE-ALHLFG 256
                            G +EDA  I ++    +   +N+++ G+       + ++ ++ 
Sbjct: 220 -----------------GFVEDAEEIFNTTKVKDIVVYNAMVEGFSRSAETAKRSVDMYI 262

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
            MQ      +  TF++++   + L+    G  +H+ ++K G+   I + S+LLDMY+KCG
Sbjct: 263 SMQRASFHPNISTFASVIGACSVLTCHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCG 322

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            ++ A  +F  +  KN+ +W +MI GY +NG+  + +ELF ++K    ++P+ VTFL VL
Sbjct: 323 GIDDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFH-IEPNYVTFLGVL 381

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
           +ACSH+ +  DK  E FESM +DY +KP +EH   M+ LMG+ GE+ +A   +R +    
Sbjct: 382 SACSHSGL-VDKGYEIFESMQRDYSMKPKMEHYACMVDLMGRAGELNKAFEFVRAMPERH 440

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY-VYVMLCNLYTSHGNWDVASVMR 495
              VW ALLS+     ++D+A I+A+E+ KL  D     Y+ L N+Y S+  WD  S +R
Sbjct: 441 NSDVWAALLSSCNLHGNVDLASIAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIR 500

Query: 496 NFMRERGLRKEAGCSW 511
             M+ R + K  G SW
Sbjct: 501 EVMKVRRISKNIGRSW 516



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 153/357 (42%), Gaps = 70/357 (19%)

Query: 4   YVLFHLLRASSDLGWD-----TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           Y L  +L+AS+ LG +     + C+ +H  I+K     +  + TAL+  Y K   L  A 
Sbjct: 136 YTLSMVLKASNSLGSNMLMPRSLCRLVHARIIKCDVELDDVLITALVDAYVKSGKLESAR 195

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSG--------------------------------KYR 86
            +F  +   +VV   S+ISGY+  G                                  +
Sbjct: 196 TVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFSRSAETAK 255

Query: 87  KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
           +++++++ ++R+  + +  +F S + AC  L   ++G  +H++I+K  +   + + + L+
Sbjct: 256 RSVDMYISMQRASFHPNISTFASVIGACSVLTCHEVGQQVHAQIMKSGVYTHIKMGSSLL 315

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTI 202
           DMY KCG ++DA  VF +M +K++ SW S+I    +NGN E A     R+      P+ +
Sbjct: 316 DMYAKCGGIDDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFHIEPNYV 375

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMP-----SPNSSSWNSI--LTGYVNR-NRVPEALHL 254
           ++  V++  +  G ++    I  SM       P    +  +  L G     N+  E +  
Sbjct: 376 TFLGVLSACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACMVDLMGRAGELNKAFEFVRA 435

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
             E  + DV                     W  L+ SC +   +D + + AS L  +
Sbjct: 436 MPERHNSDV---------------------WAALLSSCNLHGNVDLASIAASELFKL 471



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 101/193 (52%), Gaps = 6/193 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      ++ A S L      QQ+H  I+KSG  +++ + ++L+  Y K   + DA ++
Sbjct: 271 PNISTFASVIGACSVLTCHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGIDDARRV 330

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ + +V SW S+I GY ++G   +AL LF  ++   I  +  +F   L+AC   G +
Sbjct: 331 FDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFHIEPNYVTFLGVLSACSHSGLV 390

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK---DIISWNSV 176
             G  I   + + YS++  +    C++D+ G+ G +  A      M ++   D+  W ++
Sbjct: 391 DKGYEIFESMQRDYSMKPKMEHYACMVDLMGRAGELNKAFEFVRAMPERHNSDV--WAAL 448

Query: 177 IAASARNGNLELA 189
           +++   +GN++LA
Sbjct: 449 LSSCNLHGNVDLA 461



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%)

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           SA   G  IH+ +IK G    + ++  LL ++ KCG +  A  +F  L +  L  +N MI
Sbjct: 48  SAPKAGQKIHADIIKTGFIPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMI 107

Query: 341 TGYARNGDLTKVIELFE 357
           +GY ++G L +++ L +
Sbjct: 108 SGYLKHGFLKELLLLVQ 124


>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  254 bits (649), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 151/487 (31%), Positives = 256/487 (52%), Gaps = 11/487 (2%)

Query: 31  KSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALN 90
           +S    NV   TAL+  Y +   + +A  +F  +PQ +VVSWN+++  Y  +G+   A  
Sbjct: 96  RSDARRNVVTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACA 155

Query: 91  LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
           LF  +       DA S+   LA   + GS+     +  ++     ER V+    ++D   
Sbjct: 156 LFDRMP----VRDAGSWNILLAMLVRSGSVDKARELFGRMP----ERDVMAWTTMVDGVA 207

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVING 210
           + G+V++A  +F  M +++++SWN++I+   RN  L+ A     ++P+ D  S N +I G
Sbjct: 208 RSGNVDEARLLFDSMPERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRDIASCNIMITG 267

Query: 211 IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
             Q  D++ A  +   MP  N  +W +++ GY+   +   +L LF  M    +  ++ TF
Sbjct: 268 FIQNKDLKRARKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTF 327

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
              L   + L+ L  G  +H  + K        V SAL+++Y+KCG+V +A  +F     
Sbjct: 328 LGALDACSDLATLCEGKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSRE 387

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
           K+L++WN +I  YA +G   + I L+E+++     +P+ VT++ +L+ACSH+ +  D+  
Sbjct: 388 KDLISWNGIIAAYAHHGVGIEAIHLYEKMQG-NGYRPNDVTYVVLLSACSHSGL-VDEGL 445

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG-SYGVVWRALLSASG 449
           + FESM  D  I    EH   +I L  + G +  A+R+I  L    + G VW ALL    
Sbjct: 446 KIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCN 505

Query: 450 ACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGC 509
           A  +  +  ++A  +I+ E D+   Y +L N+Y S G W  A+ +R+ M  RGL+K+ GC
Sbjct: 506 AHGNESIGNLAARNLIQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGC 565

Query: 510 SWIEVEN 516
           SWIEV N
Sbjct: 566 SWIEVAN 572



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 7/162 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+      L A SDL      +Q+H  I K+ F  + FV +ALM  Y K   +  A K+
Sbjct: 322 PNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKL 381

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +  ++SWN +I+ Y   G   +A++L+ +++ +    +  ++   L+AC   G +
Sbjct: 382 FDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLV 441

Query: 121 QLGMAIHSKIVKYSLERGVVIAN----CLIDMYGKCGSVEDA 158
             G+ I   +V    +R + + +    CLID+  + G ++DA
Sbjct: 442 DEGLKIFESMVN---DRSIAVRDEHYTCLIDLCSRAGRLDDA 480


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  254 bits (649), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 143/516 (27%), Positives = 262/516 (50%), Gaps = 43/516 (8%)

Query: 40  VSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE 99
           +   L+  Y    S  D  K+F E+   ++VSW  +IS Y ++G+  KA+ LF +++ S 
Sbjct: 124 IENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASG 183

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159
           I  ++  + S L +C     L+LG  IHS +++  L   + +   + +MY +CG +E A 
Sbjct: 184 IRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAK 243

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIA------- 212
            VF  M  ++ ++W  ++    +   LE+A     R+   + +  +E +  I        
Sbjct: 244 LVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMA-MEGVELDEFVFSIVLKVCCGL 302

Query: 213 ---------------------------------QFGDIEDAIMILSSMPSPNSSSWNSIL 239
                                            + GDIE A      +  PN  SW++++
Sbjct: 303 EDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALI 362

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           +G+    R+ + + +F  ++S+ V ++ + ++++    A  + L  G   H   IK+GL 
Sbjct: 363 SGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLV 422

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           + +   SA++ MYSKCG+++ A   F S+   + V W A+I+GYA +G+  + +  F ++
Sbjct: 423 SYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRM 482

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           ++   ++P++VTF+ VL ACSH+ +   +  +Y  SM++DYG+KPT++H   MI    + 
Sbjct: 483 QSY-GVRPNAVTFIAVLTACSHSGL-VAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRA 540

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G +  A  +I  + F    + W++LL    A  DL + +I+A  + +L+      Y++L 
Sbjct: 541 GLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLF 600

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           NLY++ G W+ A  +R  M ER L+KE  CSWI V+
Sbjct: 601 NLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVK 636



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 162/339 (47%), Gaps = 40/339 (11%)

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + GK ++A +   E++ +++    +S+     ACG+L SL  G  IH ++ +        
Sbjct: 64  KQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGS 123

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP--- 197
           I NCL+ MY  CGS  D   VF EM+ K+++SW  VI+A A+NG LE A      +    
Sbjct: 124 IENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASG 183

Query: 198 -NPDTISY-----------------------------------NEVINGIAQFGDIEDAI 221
             P++  Y                                     + N   + G +E A 
Sbjct: 184 IRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAK 243

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           ++   M + N+ +W  ++ GY    ++  AL LF  M  + V +DE+ FS +L    GL 
Sbjct: 244 LVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLE 303

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
               G  IHS ++K G ++ + V + L+D Y KCG +E A   F  +   N V+W+A+I+
Sbjct: 304 DWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALIS 363

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           G++++G L   I++F  L++   +  +S  + +V  AC+
Sbjct: 364 GFSQSGRLEDCIKIFTSLRS-EGVVLNSFIYTSVFQACA 401



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 162/343 (47%), Gaps = 17/343 (4%)

Query: 2   NEYVLFHLLRASSDL-GWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           +E+V   +L+    L  WD   +Q+H +I+K G  S V V T L+ FY K   +  A++ 
Sbjct: 288 DEFVFSIVLKVCCGLEDWDMG-RQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRS 346

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I +P+ VSW++LISG+ QSG+    + +F  L    +  +++ +TS   AC    +L
Sbjct: 347 FGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANL 406

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +G   H   +K  L   +   + ++ MY KCG ++ A   F  + + D ++W ++I+  
Sbjct: 407 NMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGY 466

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A +GN   A GF  R+ +    P+ +++  V+   +  G + +A   L SM       P 
Sbjct: 467 AYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPT 526

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              ++ ++  Y     + EAL L   M  +    D  ++ ++L G      L  G +   
Sbjct: 527 IDHYDCMIDTYSRAGLLQEALELINRMPFEP---DAMSWKSLLGGCWAHCDLKLGKIAAE 583

Query: 292 CVIKQGLDASIVVASALL-DMYSKCGQVEIADSMFRSLCRKNL 333
            + +  LD        LL ++YS  G+ E A  + + +  + L
Sbjct: 584 NLFR--LDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAEREL 624



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 181/431 (41%), Gaps = 76/431 (17%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN  V   LL++     +    +Q+H +++++   +N+ V TA+   Y +   L  A  +
Sbjct: 186 PNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLV 245

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   + V+W  L+ GY Q+ K   AL LF  +    +  D + F+  L  C  L   
Sbjct: 246 FDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDW 305

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +G  IHS IVK   E  V +   L+D Y KCG +E A   FG + + + +SW+++I+  
Sbjct: 306 DMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGF 365

Query: 181 ARNGNLELAFGFLHRLPNP----DTISYNEVINGIA------------------------ 212
           +++G LE        L +     ++  Y  V    A                        
Sbjct: 366 SQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYL 425

Query: 213 -----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                      + G ++ A     S+  P++ +W +I++GY       EAL  F  MQS 
Sbjct: 426 YGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSY 485

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  +  TF      IA L+A +     HS ++ +                      +  
Sbjct: 486 GVRPNAVTF------IAVLTACS-----HSGLVAEA--------------------KQYL 514

Query: 322 DSMFRSLCRKNLVT-WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC- 379
            SM R    K  +  ++ MI  Y+R G L + +EL  ++      +PD++++ ++L  C 
Sbjct: 515 GSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMP----FEPDAMSWKSLLGGCW 570

Query: 380 SHTDIPFDKVS 390
           +H D+   K++
Sbjct: 571 AHCDLKLGKIA 581


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  254 bits (649), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 152/492 (30%), Positives = 254/492 (51%), Gaps = 39/492 (7%)

Query: 29  ILKSGFLSNVFVSTALMGF--YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYR 86
           +L++    + F ++ ++ F       SL  A  +F +IP P+  + NS+I GY      R
Sbjct: 1   MLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPR 60

Query: 87  KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
           +A+  +  +    +  D ++F S   +CG L     G  +H    K        I N L+
Sbjct: 61  QAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLM 117

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNE 206
           +MY  CG +  A  VF +M++K ++SW ++I A                           
Sbjct: 118 NMYSNCGCLVSARKVFDKMVNKSVVSWATMIGA--------------------------- 150

Query: 207 VINGIAQFGDIEDAIMILSSMP-SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
                AQ+    +AI +   M  + N   WN ++ G+V  +   EAL LF EMQ   V  
Sbjct: 151 ----YAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKG 206

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           D+ T +++L     L AL  G  +H  + K+ ++  + + +AL+DMY+KCG +E A  +F
Sbjct: 207 DKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVF 266

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
           + +  K+++TW A+I G A  G   K +ELF +++ + +++PD++TF+ VLAACSH  + 
Sbjct: 267 QEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQ-MSEVKPDAITFVGVLAACSHAGLV 325

Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
            + ++ YF SM   YGI+P++EH   M+ ++G+ G +  A+ +I+ +       V   LL
Sbjct: 326 NEGIA-YFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLL 384

Query: 446 SASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505
           SA     +L VA  +A ++I+L+  +   YV+L N+Y+S  NW+ A  MR  M ER ++K
Sbjct: 385 SACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKK 444

Query: 506 EAGCSWIEVENV 517
             GCS IEV  V
Sbjct: 445 PPGCSAIEVGGV 456



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 97/183 (53%), Gaps = 2/183 (1%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           LL A + LG     + LH YI K     +V + TAL+  Y K  S+  A ++F E+P+  
Sbjct: 214 LLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKD 273

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA-IH 127
           V++W +LI G    G+  KAL LF E++ SE+  DA +F   LAAC   G +  G+A  +
Sbjct: 274 VMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFN 333

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNL 186
           S   KY ++  +    C++DM G+ G + +A  +   M +  D      +++A   +GNL
Sbjct: 334 SMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNL 393

Query: 187 ELA 189
            +A
Sbjct: 394 VVA 396


>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 159/544 (29%), Positives = 274/544 (50%), Gaps = 61/544 (11%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF------- 61
           ++RA + +G     + +H ++L+ GF S++ V   L+G Y K+  + DA  +F       
Sbjct: 48  VIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGRMRDARHLFDRMSVRS 107

Query: 62  --------------------VEIPQ--------PSVVSWNSLISGYVQSGKYRKALNLFV 93
                               +EI Q        P++V+W SLIS Y +SG + +A+ LF 
Sbjct: 108 YISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYARSGWHEEAMELFG 167

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
            +    +     +    ++ C  LG+      IH   VK   E    + + LI +YGK G
Sbjct: 168 LMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFEEYSFVKSALICVYGKHG 227

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQ 213
            V  A  +F EM +K + SWN++I + A  G  + A                E+ + + +
Sbjct: 228 DVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEAL---------------EIFSQLER 272

Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
            GD             PN  SW++I+ G+ ++ R  EAL LF  MQ   +  +  T ST+
Sbjct: 273 SGDCPRL--------RPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTV 324

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           LS  A L+AL  G  IH  V++  +  +I+V + L++MY+KCG ++    +F    RK+L
Sbjct: 325 LSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDL 384

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393
           ++WN+MITGY  +G     +E F+Q+  +   +PD VTF+ VL++CSH+ +  +     F
Sbjct: 385 ISWNSMITGYGMHGLGMNALETFDQMIKL-GFKPDGVTFVAVLSSCSHSGLVHEG-RRLF 442

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD 453
           + M K Y I+P +EH   M+ L+G+ G +  A  +++ +       VW ALL++    ++
Sbjct: 443 DQMLKKYRIEPQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMHNN 502

Query: 454 LDVARISAAEVIKL-EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
            ++A  +A+ +  L   ++   Y++L N+Y + G W+ ++ +R   + +GL+K  G SWI
Sbjct: 503 TEIAEETASHLFNLSHRETTGTYMLLSNIYAASGRWEDSARVRTSAKTKGLKKNPGQSWI 562

Query: 513 EVEN 516
           +VE 
Sbjct: 563 KVEK 566



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 128/274 (46%), Gaps = 30/274 (10%)

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            D ++F   + AC  +GS  LG  IH  +++   +  + + N LI MY K G + DA  +
Sbjct: 40  GDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGRMRDARHL 99

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F  M  +  ISWN++++A A N +   A     R+                         
Sbjct: 100 FDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRME------------------------ 135

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
              S    PN  +W S+++ Y       EA+ LFG M+ K V +     + ++S  A L 
Sbjct: 136 ---SEGMEPNLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLG 192

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           A     +IH   +K G +    V SAL+ +Y K G V  A ++F  +  K+L +WNA+IT
Sbjct: 193 AFVRAKIIHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALIT 252

Query: 342 GYARNGDLTKVIELFEQLKTVRD---LQPDSVTF 372
            +A  G   + +E+F QL+   D   L+P+ V++
Sbjct: 253 SHAEAGLCDEALEIFSQLERSGDCPRLRPNVVSW 286



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 102/196 (52%), Gaps = 8/196 (4%)

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           D +TF  ++   A + +   G  IH  V++ G  + + V + L+ MY+K G++  A  +F
Sbjct: 41  DGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGRMRDARHLF 100

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
             +  ++ ++WN M++ YA N D    +E+F+++++   ++P+ VT+ +++++ + +   
Sbjct: 101 DRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMES-EGMEPNLVTWTSLISSYARSGW- 158

Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSYGVVW 441
            ++  E F  + +  G++ + E    +I +    G   RA ++I E     GF  Y  V 
Sbjct: 159 HEEAMELF-GLMRMKGVEVSGEALAVVISICADLGAFVRA-KIIHEYAVKGGFEEYSFVK 216

Query: 442 RALLSASGACSDLDVA 457
            AL+   G   D++ A
Sbjct: 217 SALICVYGKHGDVNGA 232


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 152/522 (29%), Positives = 264/522 (50%), Gaps = 42/522 (8%)

Query: 35  LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF-V 93
           +SNV+V T+L+  Y K+  ++DA +MF  +PQ +  SW+++++GY       +A +LF +
Sbjct: 150 VSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRL 209

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
            LE        +  T+ L+A      L +G  +H  IVK  L   V + N L+ MY K G
Sbjct: 210 MLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAG 269

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVIN 209
            +  A  VF    +++ I+W+++I   A+NG  + A     ++      P   ++  V+N
Sbjct: 270 CMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLN 329

Query: 210 G-----------------------------------IAQFGDIEDAIMILSSMPSPNSSS 234
                                                A+ G I DA      +   +   
Sbjct: 330 ASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVL 389

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
           W ++++G+V      EAL L+  M  + +   + T ++ L   AG++AL  G  +H+ ++
Sbjct: 390 WTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIV 449

Query: 295 KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
           K GL     V SAL  MYSKCG +E   S+FR +  ++++ WN++I+G+++NG     ++
Sbjct: 450 KYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALD 509

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
           LFE++K +    PD++TF+N+L ACSH  +  D+  EYF  MTKDYG+ P ++H   M+ 
Sbjct: 510 LFEEMK-MEGTIPDNITFINILCACSHMGL-VDRGWEYFSLMTKDYGLTPRLDHYACMVD 567

Query: 415 LMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474
           ++ + G +  A+  I  +       +WR +L A  +  D DV   +   +++L       
Sbjct: 568 ILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTRDSSA 627

Query: 475 YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           Y++L N+Y S   W+    +R+ MR RG+ K+ GCSW+E+ +
Sbjct: 628 YILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNS 669



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 126/222 (56%), Gaps = 4/222 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P E+    +L ASSDLG     +Q H  ++K GF   ++V +AL+  Y K   +ADA + 
Sbjct: 319 PTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEG 378

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ +  +V W +++SG+VQ+G++ +AL L+  +++  I     +  S L AC  + +L
Sbjct: 379 FDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAAL 438

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H++IVKY L  G  + + L  MY KCG++ED + VF  + D+D+I+WNS+I+  
Sbjct: 439 EPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGF 498

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIE 218
           ++NG    A      +      PD I++  ++   +  G ++
Sbjct: 499 SQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVD 540



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 184/404 (45%), Gaps = 48/404 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINS--LADAHKMFVEIPQPS--VVSWNSLISG 78
           + LH + LKSG  S+  V+ +L+ FY  +    LA A  +F +IP  +  V SWNSL++ 
Sbjct: 32  EALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWNSLLNP 91

Query: 79  YVQSGKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY-SLE 136
            +   +   AL+ F   L  S +    +SF +A  A  +  S   G A H+   K  S  
Sbjct: 92  -LSRHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSAV 150

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF---- 192
             V +   L++MY K G V DA  +F  M  ++  SW++++A  A     E AF      
Sbjct: 151 SNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 210

Query: 193 LHRLPN----------------PDTISYNEVINGI--------------------AQFGD 216
           L   P+                P  +   E ++G+                    A+ G 
Sbjct: 211 LEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGC 270

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           +  A  +  S    NS +W++++TGY        A+ +F +M +      E+TF  +L+ 
Sbjct: 271 MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNA 330

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            + L AL  G   H  ++K G +  I V SAL+DMY+KCG +  A   F  L   ++V W
Sbjct: 331 SSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLW 390

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            AM++G+ +NG+  + + L+ ++     + P   T  + L AC+
Sbjct: 391 TAMVSGHVQNGEHEEALTLYARMDK-EGIIPSKSTIASGLRACA 433



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 156/346 (45%), Gaps = 40/346 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  I+K G L  V V  +L+  Y K   +  A  +F    + + ++W+++I+GY Q+
Sbjct: 240 EQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQN 299

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+   A+++F ++  +      ++F   L A   LG+L +G   H  +VK   E  + + 
Sbjct: 300 GEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVK 359

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------ 196
           + L+DMY KCG + DA   F ++ + DI+ W ++++   +NG  E A     R+      
Sbjct: 360 SALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGII 419

Query: 197 PNPDTISYN-EVINGIAQF--------------------------------GDIEDAIMI 223
           P+  TI+       GIA                                  G++ED + +
Sbjct: 420 PSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSV 479

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +P  +  +WNSI++G+        AL LF EM+ +    D  TF  +L   + +  +
Sbjct: 480 FRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLV 539

Query: 284 TWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
             G    S + K  GL   +   + ++D+ S+ G ++ A     S+
Sbjct: 540 DRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESI 585



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 134/304 (44%), Gaps = 48/304 (15%)

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGS--VEDAIGVFGEMID--KDIISWNSVIA 178
           G A+H+  +K        +AN LI+ Y       +  A  VF ++    +D+ SWNS++ 
Sbjct: 31  GEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWNSLLN 90

Query: 179 ASARNGNLELAFGFLHRL------PNPDTISY---------------------------- 204
             +R+  L+    F   L      P+P + +                             
Sbjct: 91  PLSRHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSAV 150

Query: 205 ------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
                   ++N   + G + DA  +   MP  NS SW++++ GY       EA  LF  +
Sbjct: 151 SNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLF-RL 209

Query: 259 QSKDVPMD--EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
             ++ P +  E+  + +LS ++    L  G  +H  ++K GL   + V ++L+ MY+K G
Sbjct: 210 MLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAG 269

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            +  A  +F S   +N +TW+AMITGYA+NG+    + +F Q+       P   TF+ VL
Sbjct: 270 CMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAA-GFTPTEFTFVGVL 328

Query: 377 AACS 380
            A S
Sbjct: 329 NASS 332



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 2/181 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  +   LRA + +      +QLH  I+K G      V +AL   Y K  +L D   +
Sbjct: 420 PSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSV 479

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP   V++WNS+ISG+ Q+G    AL+LF E++      D  +F + L AC  +G +
Sbjct: 480 FRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLV 539

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G    S + K Y L   +    C++D+  + G +++A      + ID     W  V+ 
Sbjct: 540 DRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLG 599

Query: 179 A 179
           A
Sbjct: 600 A 600


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 165/544 (30%), Positives = 271/544 (49%), Gaps = 43/544 (7%)

Query: 8   HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP 67
           HL      L    + Q+LH  +LK G   +   ++ L+  Y     L  + ++F   P P
Sbjct: 60  HLASLPHGLQHLHHVQELHAQLLKHGLHLDPLAASKLISSYALQRRLPASRRIFASFPNP 119

Query: 68  SVVSW--NSLISGYVQSGKYRKALNLFVELERSEIYADAYSF-TSALAACGQLGSLQLGM 124
              ++  N+L+  Y  +     A++LF  + + + +   YSF   AL++ G L  L+   
Sbjct: 120 QATTFLPNTLLRAYALNALPHAAVSLFSAMPQRDSFT--YSFLIKALSSSG-LTPLR--- 173

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF---------------------- 162
           A+HS +VK        + N LID Y K G   DA  VF                      
Sbjct: 174 AVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQG 233

Query: 163 ---------GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQ 213
                     EM DKD +SWN+V+    + G +E AF     +P  + +S++ V++G  +
Sbjct: 234 EVASARRMFDEMPDKDTVSWNTVLDGYTKAGKMEDAFELFQCMPERNVVSWSTVVSGYCK 293

Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
            GDIE A +I   MP+ N  +W  +++       V EA  LF +M+   V +D     ++
Sbjct: 294 KGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSI 353

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS-LCRKN 332
           L+  A   +L  G  IH  V  + L  S  V +A++DM+ KCG V  AD +F + +  K+
Sbjct: 354 LAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKD 413

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
            V+WN +I G+A +G   K ++ F Q+K ++  +PD+VT +NVL+AC+H     ++  ++
Sbjct: 414 SVSWNTIIGGFAMHGHGDKALDFFAQMK-LQGFRPDAVTMINVLSACTHMGF-VEEGRQH 471

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
           F +M +DYGI P +EH   MI L+G+ G +  A  +I+ + +    V+W +LLSA     
Sbjct: 472 FSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRLHK 531

Query: 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           +++ A I+  E+ KL+  +   Y +L N+Y   G W   +  R  M+  G +K AG SWI
Sbjct: 532 NVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKSAGSSWI 591

Query: 513 EVEN 516
           E++ 
Sbjct: 592 ELDE 595


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 151/519 (29%), Positives = 263/519 (50%), Gaps = 48/519 (9%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGF------LSNVFVSTALMGFYRKINSLADA 57
           Y L  LL+  S+L    +  Q HC++L  G       LS    + + +GF         +
Sbjct: 42  YHLLSLLKQCSNL---KHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHY------S 92

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
           H +F    +P +  +N++I          +A+ L+  +  S++  D YS    L A  +L
Sbjct: 93  HSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRL 152

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
            ++ +G  IH + +   L   + +   LI MY  CG V +A  +F  +  +D+  WN+++
Sbjct: 153 LAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMV 212

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
           A                               G A+ GD+++A  +   MP  N  SW +
Sbjct: 213 A-------------------------------GYAKVGDVDNARHLFERMPERNVISWTA 241

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           ++ GY   +R  EA+ +F  MQ ++V  DE      LS  A L AL  G  IH+ + K G
Sbjct: 242 VIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHG 301

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
           L   + + +AL+DMY+KCG++E A  +F+++  K+++TW +MI G A +G   + +E+F 
Sbjct: 302 LSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFS 361

Query: 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417
            ++  R ++P+ +TF+ +L+AC H  +  +    YF+ M   YGIKP ++H   MI L+G
Sbjct: 362 CMERNR-IKPNEITFVAILSACCHVGL-VEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLG 419

Query: 418 QKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477
           + G +  AQ ++R + F +   +W +LL+A+    D ++ + +   +IK+E  +   Y +
Sbjct: 420 RAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNYTL 479

Query: 478 LCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           L N+Y +   W+ A ++R  MR+ G++K  G S IEV N
Sbjct: 480 LSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNN 518



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 101/198 (51%), Gaps = 2/198 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +   L A + LG     + +H YI K G    V ++ AL+  Y K   +  A ++
Sbjct: 269 PDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEV 328

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   SV++W S+I G    G  R+AL +F  +ER+ I  +  +F + L+AC  +G +
Sbjct: 329 FKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLV 388

Query: 121 QLGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIG-VFGEMIDKDIISWNSVIA 178
           ++G      +  KY ++  +    C+ID+ G+ G +++A   V G   + +   W S++A
Sbjct: 389 EMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLA 448

Query: 179 ASARNGNLELAFGFLHRL 196
           A+  +G+ EL    L  L
Sbjct: 449 AARIHGDAELGKQALQHL 466


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 154/518 (29%), Positives = 265/518 (51%), Gaps = 37/518 (7%)

Query: 1   PNEYVLFHLLRA-SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P+ Y    LL+A ++          +H +++K G   N  V+++L+  Y      A A  
Sbjct: 16  PDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVLMYAARGDGAVART 75

Query: 60  MFVEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           +    P     + V WN+LISG+ +S ++R +   FV++ R+ +     ++ + L+ACG+
Sbjct: 76  LLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGK 135

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
              + LGM +H  +V   +   + + N LIDMY +C  ++ A  +F  M  ++ +SW SV
Sbjct: 136 DKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSV 195

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
           I+            GFL                   + G ++ A  +   MP  ++ SW 
Sbjct: 196 IS------------GFL-------------------RLGQVDQARTLFDCMPERDTVSWT 224

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           +++ GYV   +  EAL +F EMQ   V  DE+T  ++++  A L AL  G      + + 
Sbjct: 225 AMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRH 284

Query: 297 GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
           G+     V +AL+DMYSKCG ++ A  +F+ +  ++  TW A+I G A NG   + I +F
Sbjct: 285 GIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMF 344

Query: 357 EQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLM 416
            ++  V +  PD VTF+ VL AC+H  +  DK  ++F SMT  YGI P V H   +I L+
Sbjct: 345 YRMLRVFE-APDEVTFIGVLTACTHAGL-VDKGRDFFLSMTGSYGIAPNVMHFGCLIDLL 402

Query: 417 GQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476
           G+ G++  A   I  +       +W  LL+A     + ++ +++A  +++L+ ++  VY+
Sbjct: 403 GRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYI 462

Query: 477 MLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           +L NLY     W+    +R  + E+G++KE GCS IE+
Sbjct: 463 LLSNLYAKSNRWEDVRRLRQVIMEKGIKKEPGCSLIEM 500


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 151/519 (29%), Positives = 263/519 (50%), Gaps = 48/519 (9%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGF------LSNVFVSTALMGFYRKINSLADA 57
           Y L  LL+  S+L    +  Q HC++L  G       LS    + + +GF         +
Sbjct: 42  YHLLSLLKQCSNL---KHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHY------S 92

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
           H +F    +P +  +N++I          +A+ L+  +  S++  D YS    L A  +L
Sbjct: 93  HSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRL 152

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
            ++ +G  IH + +   L   + +   LI MY  CG V +A  +F  +  +D+  WN+++
Sbjct: 153 LAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMV 212

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
           A                               G A+ GD+++A  +   MP  N  SW +
Sbjct: 213 A-------------------------------GYAKVGDVDNARHLFERMPERNVISWTA 241

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           ++ GY   +R  EA+ +F  MQ ++V  DE      LS  A L AL  G  IH+ + K G
Sbjct: 242 VIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHG 301

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
           L   + + +AL+DMY+KCG++E A  +F+++  K+++TW +MI G A +G   + +E+F 
Sbjct: 302 LSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFS 361

Query: 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417
            ++  R ++P+ +TF+ +L+AC H  +  +    YF+ M   YGIKP ++H   MI L+G
Sbjct: 362 CMERNR-IKPNEITFVAILSACCHVGL-VEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLG 419

Query: 418 QKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477
           + G +  AQ ++R + F +   +W +LL+A+    D ++ + +   +IK+E  +   Y +
Sbjct: 420 RAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNYTL 479

Query: 478 LCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           L N+Y +   W+ A ++R  MR+ G++K  G S IEV N
Sbjct: 480 LSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNN 518



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 101/198 (51%), Gaps = 2/198 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +   L A + LG     + +H YI K G    V ++ AL+  Y K   +  A ++
Sbjct: 269 PDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEV 328

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   SV++W S+I G    G  R+AL +F  +ER+ I  +  +F + L+AC  +G +
Sbjct: 329 FKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLV 388

Query: 121 QLGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIG-VFGEMIDKDIISWNSVIA 178
           ++G      +  KY ++  +    C+ID+ G+ G +++A   V G   + +   W S++A
Sbjct: 389 EMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLA 448

Query: 179 ASARNGNLELAFGFLHRL 196
           A+  +G+ EL    L  L
Sbjct: 449 AARIHGDAELGKQALQHL 466


>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 151/518 (29%), Positives = 274/518 (52%), Gaps = 23/518 (4%)

Query: 21  YCQ--------QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ----PS 68
           YCQ        QL   + + G    +     L+  Y +     DA ++  ++      P 
Sbjct: 261 YCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAMELMKKMESFRIVPD 320

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           V +W S+ISG+ Q+ +  +AL LF E+  + I  +  + TS ++AC  L +L+ GM +HS
Sbjct: 321 VFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLKALKKGMELHS 380

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
             VK      +++ N LIDMY K G +EDA  VF  ++ KD+ +WNS+I    + G    
Sbjct: 381 VAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGYCGK 440

Query: 189 AFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPSP-----NSSSWNSIL 239
           A+    ++      P+ +++N +I+G  Q GD + A+ +   M        +++SWNS++
Sbjct: 441 AYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWNSLI 500

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            GY+      +AL +F +MQS  +  +  T  ++L   A L A      IH C++++ L 
Sbjct: 501 AGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPACANLVAAKKVKEIHGCILRRNLG 560

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           + + VA+ L+D Y+K G +  A ++F+ +  K++++WN++I GY  +G     ++LF+Q+
Sbjct: 561 SELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGYVLHGCSDSALDLFDQM 620

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
            T   ++P   TFL+++ A S + +  DK  + F SM +DY I P +EH  +MI L+G+ 
Sbjct: 621 -TKMGVKPSRGTFLSIIYAFSLSGM-VDKGKQVFSSMMEDYQILPGLEHHSAMIDLLGRS 678

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G++  A   I ++       +W ALL+AS    ++ +A  +   +++LE  +  ++  + 
Sbjct: 679 GKLGEAIEFIEDMAIEPDSCIWAALLTASKIHGNIGLAIRAGECLLELEPSNFSIHQQIL 738

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
            +Y   G ++  S +R   +    ++  GCSWIE +N+
Sbjct: 739 QMYALSGKFEDVSKLRKSEKRSETKQPLGCSWIEAKNI 776



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 141/479 (29%), Positives = 243/479 (50%), Gaps = 21/479 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLS--NVFVSTALMGFYRKINSLADAH 58
           PN Y+   LL++  D G     ++LH  I   G L   N FV T L+  Y K  SL +A 
Sbjct: 85  PNTYM--QLLQSCIDQGSAELGRKLHARI---GLLEEMNPFVETKLVSMYAKCGSLGEAR 139

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           K+F E+ + ++ +W+++I  Y +   +R+ +  F  +    I  D +     L ACG  G
Sbjct: 140 KVFGEMRERNLYAWSAMIGAYSREQMWREVVQHFFFMMEDGIVPDEFLLPKILQACGNCG 199

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
             + G  IHS +++  +   + ++N ++ +Y KCG +  A   F  M  +D +SWNS+I 
Sbjct: 200 DAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDRVSWNSIIT 259

Query: 179 ASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMPS----P 230
              + G LE +     ++      P  +++N +IN  +Q G  +DA+ ++  M S    P
Sbjct: 260 GYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAMELMKKMESFRIVP 319

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
           +  +W S+++G+   NR  +AL LF EM    +  +  T ++ +S  A L AL  GM +H
Sbjct: 320 DVFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLKALKKGMELH 379

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
           S  +K G    ++V ++L+DMYSK G++E A  +F  + +K++ TWN+MI GY + G   
Sbjct: 380 SVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGYCG 439

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           K  +LF ++    D+ P+ VT+ N + +    +   D+  + F  M KD  IK       
Sbjct: 440 KAYDLFIKMHE-SDVPPNVVTW-NAMISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWN 497

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469
           S+I    Q G   +A  + R++           +LS   AC++L    ++A +V ++ G
Sbjct: 498 SLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPACANL----VAAKKVKEIHG 552



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 98/191 (51%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  +L A ++L      +++H  IL+    S + V+  L+  Y K  ++  A  +
Sbjct: 526 PNSVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTI 585

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I    ++SWNSLI+GYV  G    AL+LF ++ +  +     +F S + A    G +
Sbjct: 586 FQGISSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMV 645

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G  + S +++ Y +  G+   + +ID+ G+ G + +AI    +M I+ D   W +++ 
Sbjct: 646 DKGKQVFSSMMEDYQILPGLEHHSAMIDLLGRSGKLGEAIEFIEDMAIEPDSCIWAALLT 705

Query: 179 ASARNGNLELA 189
           AS  +GN+ LA
Sbjct: 706 ASKIHGNIGLA 716


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 175/558 (31%), Positives = 274/558 (49%), Gaps = 50/558 (8%)

Query: 2   NEYVLFHLLRA---SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           +++VL   L+A   S+D G+ T   +LHC  +K G  ++ FV  +L+  Y K   L  A 
Sbjct: 132 DDFVLSLALKACIRSADYGYGT---RLHCDAVKVGG-ADGFVMNSLVDMYAKAGDLECAR 187

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           K+F  IP  +VVSW S++SG VQ+G     L LF ++ +  +    Y+  + + AC  L 
Sbjct: 188 KVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALI 247

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            L  G  +H  ++K  L     I+  L+DMY KCG +EDA  VF E+   D++ W ++I 
Sbjct: 248 GLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIV 307

Query: 179 ASARNGN------LELAFGFLHRLPNPDTIS----------------------------- 203
              +NGN      L L   F + +PN  TI+                             
Sbjct: 308 GYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGLVE 367

Query: 204 YNEVINGI----AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           Y  V+N +    A+   + +A  I  S+ + +  +WNS+L+GY   N   +AL LF +M 
Sbjct: 368 YTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMS 427

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            K    D  +    LS    L  L  G   H   +K    ++I V++ALL++Y+KCG + 
Sbjct: 428 LKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTALLNLYNKCGDLP 487

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVLAA 378
            A  +F  +  +N VTW AMI GY   GD    I+LF E LK    + P+ V F ++L+ 
Sbjct: 488 SARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKD--GVHPNDVAFTSILST 545

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSHT +       YF+SM + + I P+++H   M+ ++ + G +  A   I  +   +  
Sbjct: 546 CSHTGM-VTAAKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEEALEFIDNMPMQADT 604

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
            VW A L      S L     +   ++ L  +   +YV++ NLYTS+G W+ +  +R +M
Sbjct: 605 SVWGAFLHGCELHSRLQFGEEAIKRMMVLHPERPDLYVLISNLYTSNGMWEKSQAIRRWM 664

Query: 499 RERGLRKEAGCSWIEVEN 516
           +E+GL K  G S I  EN
Sbjct: 665 QEKGLVKLPGYSSIGREN 682



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 207/450 (46%), Gaps = 37/450 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+EY +  ++ A S L      + +H  ++K G +SN F+S AL+  Y K   L DA  +
Sbjct: 231 PSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCV 290

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+    +V W ++I GY Q+G    AL LF++ + + I  ++ +  + L+A  QL  L
Sbjct: 291 FDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRDL 350

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG +IH   VK  L    V+ N L+DMY KC +V +A  +FG + +KD+++WNS+++  
Sbjct: 351 SLGRSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGY 410

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS------- 229
           A N     A     ++    P+PD IS    ++     GD    ++I  S          
Sbjct: 411 AENNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGD----LLIGKSFHGYAVKHAF 466

Query: 230 -PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             N     ++L  Y     +P A  +F EM  +    +  T+  M+ G  G+   + G +
Sbjct: 467 LSNIYVSTALLNLYNKCGDLPSARRVFDEMNDR----NSVTWCAMIGGY-GMQGDSAGSI 521

Query: 289 -IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT-----WNAMITG 342
            +   ++K G+  + V  +++L   S  G V  A   F S+ +   +T     +  M+  
Sbjct: 522 DLFGEMLKDGVHPNDVAFTSILSTCSHTGMVTAAKRYFDSMAQHFNITPSMKHYACMVDV 581

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS-HTDIPFDKVSEYFESMTKDYG 401
            AR G+L + +E  + +     +Q D+  +   L  C  H+ + F +     E++ +   
Sbjct: 582 LARAGNLEEALEFIDNMP----MQADTSVWGAFLHGCELHSRLQFGE-----EAIKRMMV 632

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431
           + P       +I  +     +W   + IR 
Sbjct: 633 LHPERPDLYVLISNLYTSNGMWEKSQAIRR 662



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 5/179 (2%)

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDV 263
            ++++  A  GD+  A M+    P P++ S+  +L   V   R  EA+ L  +M + +  
Sbjct: 68  TKLLSCYAALGDLASARMVFDGTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPC 127

Query: 264 P--MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           P   D++  S  L      +   +G  +H   +K G  A   V ++L+DMY+K G +E A
Sbjct: 128 PEAQDDFVLSLALKACIRSADYGYGTRLHCDAVKVG-GADGFVMNSLVDMYAKAGDLECA 186

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             +F  +  +N+V+W +M++G  +NG     + LF +++   ++ P   T   V+ ACS
Sbjct: 187 RKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQ-DNVPPSEYTIATVITACS 244


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 169/558 (30%), Positives = 273/558 (48%), Gaps = 48/558 (8%)

Query: 8   HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFY---RKINSLADAHKMFVEI 64
           HL      L    + Q+LH  +LK G   +   ++ L+  Y   R++ +        V +
Sbjct: 28  HLASLPHGLPRLRHVQELHAQLLKQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVAL 87

Query: 65  PQPSVVS-----WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF-TSALAACGQLG 118
           P     S       +L+  Y  +     AL +F+++   +     YSF   ALAA G   
Sbjct: 88  PNSPFPSSTTLLTKTLLRAYALNSLPHAALAVFLDVPLRQRGTFTYSFLIKALAAAG--- 144

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            L      H+ +VK        + N LID Y K   + DA  VF EM  +D++SWN+ +A
Sbjct: 145 -LTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMA 203

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
           A  R G ++ A      +P  DT+S+N +++G A+ G+ E A  +   MP  N  SW+++
Sbjct: 204 AMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTV 263

Query: 239 LTGYVNR----------NRVP---------------------EALHLFGEMQSKDVPMDE 267
           ++ Y  +          +++P                     EA  LF EM    + +D 
Sbjct: 264 VSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDV 323

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
               ++L+  A   +L  G  IH  V ++ L  S +V +AL+DM+ KCG V  AD +F +
Sbjct: 324 IAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDT 383

Query: 328 -LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
            +  K+LV+WN +I G+A +G   K +ELF Q+K  +   PD+VT +NVL+AC+H  +  
Sbjct: 384 EIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQ-QGFHPDAVTLINVLSACTHMGL-V 441

Query: 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
           ++   +F +M  DYGIKP +EH   M+ L+G+ G +  A  MI+ + +    V+W +LLS
Sbjct: 442 EEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLS 501

Query: 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506
           A     +++ A ++  E+  L+  S   Y +L N+Y   G W   +  R  M+  G +K 
Sbjct: 502 ACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKT 561

Query: 507 AGCSWIEVENVAAHSSNI 524
           AG SWIE+ N A H   +
Sbjct: 562 AGSSWIEL-NEAFHEFTV 578


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 154/540 (28%), Positives = 272/540 (50%), Gaps = 50/540 (9%)

Query: 23  QQLHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           Q LH  IL++  L  ++ + TAL+  Y +   L  A K F E+ + ++V+WN+LI+GY +
Sbjct: 78  QLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSR 137

Query: 82  SGKYRKALNLFVELERSE---IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
           +G +R AL ++ ++       +  DA +F+SAL AC  +G +  G  I ++ V       
Sbjct: 138 NGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASD 197

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL-- 196
            ++ N LI+MY KCGS+E A  VF  + ++D+I+WN++I+  A+ G    A     R+  
Sbjct: 198 SIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGP 257

Query: 197 --PNPDTISYNEVINGIAQFGD------------------------------------IE 218
             P P+ +++  ++       D                                    +E
Sbjct: 258 NDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLE 317

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
           +A  +   + + +  +WN ++  YV   +  +AL +F +MQ ++V  +E T S +LS  A
Sbjct: 318 EARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACA 377

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            L A   G  +H+ +      A +V+ ++L++MY++CG ++    +F ++  K+LV+W+ 
Sbjct: 378 VLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWST 437

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           +I  YA++G     +E F +L     L  D VT ++ L+ACSH  +  + V + F SM  
Sbjct: 438 LIAAYAQHGHSRTGLEHFWELLQ-EGLAADDVTMVSTLSACSHGGMLKEGV-QSFLSMVG 495

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           D+G+ P   H   M+ L+ + G +  A+ +I ++ F    V W +LLS     +D   A 
Sbjct: 496 DHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAA 555

Query: 459 ISAAEVIKLEGDSDYVYV-MLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
             A ++ +LE + ++  V +L N+Y   G WD     RN    R  RK  GCS+IE+ + 
Sbjct: 556 RVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRN---RRAARKNPGCSYIEINDT 612



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 186/378 (49%), Gaps = 45/378 (11%)

Query: 47  FYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYS 106
            Y K  S+ADA  +F  I  P+ VSW  +++ + ++G YR+AL  +  +    +  D   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYS-LERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
           F  A+  C     L+ G  +H+ I++   LE  +++   LI MY +C  +E A   F EM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 166 IDKDIISWNSVIAASARNGN----LELAFGFLHRLP---NPDTISY-------------- 204
             K +++WN++IA  +RNG+    L++    + + P    PD I++              
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 205 ---------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYV 243
                                N +IN  ++ G +E A  +   + + +  +WN++++GY 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV 303
            +    +AL LF  M   D   +  TF  +L+    L  L  G  IH  V + G ++ +V
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLV 300

Query: 304 VASALLDMYSKC-GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
           + + LL+MY+KC   +E A  +F  L  ++++TWN +I  Y + G     +++F+Q++ +
Sbjct: 301 IGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQ-L 359

Query: 363 RDLQPDSVTFLNVLAACS 380
            ++ P+ +T  NVL+AC+
Sbjct: 360 ENVAPNEITLSNVLSACA 377



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 181/401 (45%), Gaps = 42/401 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+       L A S +G  +  +++    + SG+ S+  V  AL+  Y K  SL  A K+
Sbjct: 161 PDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKV 220

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    V++WN++ISGY + G   +AL LF  +  ++   +  +F   L AC  L  L
Sbjct: 221 FDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDL 280

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKC-GSVEDAIGVFGEMIDKDIISWNSVIAA 179
           + G AIH K+ ++  E  +VI N L++MY KC  S+E+A  VF  +  +D+I+WN +I A
Sbjct: 281 EQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVA 340

Query: 180 SARNGNLELAFGFLHRL------PNPDTIS------------------------------ 203
             + G  + A     ++      PN  T+S                              
Sbjct: 341 YVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKAD 400

Query: 204 ---YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N ++N   + G ++D + + +++   +  SW++++  Y         L  F E+  
Sbjct: 401 VVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQ 460

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGML-IHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           + +  D+ T  + LS  +    L  G+    S V   GL         ++D+ S+ G++E
Sbjct: 461 EGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLE 520

Query: 320 IADSMFRSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            A+++   +    + V W ++++G   + D  +   + ++L
Sbjct: 521 AAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKL 561



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 135/279 (48%), Gaps = 44/279 (15%)

Query: 148 MYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------PNP-- 199
           MYGKCGSV DA+ VF  +   + +SW  ++AA ARNG+   A G+  R+      P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 200 --------------------------------DTISYNEVINGIAQFGDIEDAIMILSSM 227
                                           D I    +I   A+  D+E A      M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD---VPMDEYTFSTMLSGIAGLSALT 284
                 +WN+++ GY        AL ++ +M SK    +  D  TFS+ L   + +  ++
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  I +  +  G  +  +V +AL++MYSKCG +E A  +F  L  ++++ WN MI+GYA
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           + G  T+ +ELF+++    D +P+ VTF+ +L AC++ +
Sbjct: 241 KQGAATQALELFQRMGP-NDPKPNVVTFIGLLTACTNLE 278



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 159/322 (49%), Gaps = 49/322 (15%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINS-LADAHK 59
           PN      LL A ++L      + +H  + + G+ S++ +   L+  Y K +S L +A +
Sbjct: 262 PNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQ 321

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  +    V++WN LI  YVQ G+ + AL++F +++   +  +  + ++ L+AC  LG+
Sbjct: 322 VFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGA 381

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            + G A+H+ I     +  VV+ N L++MY +CGS++D +GVF  + DK ++SW+++IAA
Sbjct: 382 KRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAA 441

Query: 180 SARNGNLELAF------------------------------------GFLHRLPN----P 199
            A++G+                                          FL  + +    P
Sbjct: 442 YAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAP 501

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPS-PNSSSWNSILTG---YVNRNRVPEALHLF 255
           D   +  +++ +++ G +E A  ++  MP  P++ +W S+L+G   + +  R        
Sbjct: 502 DYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKL 561

Query: 256 GEMQSKDVPMDEYTFSTMLSGI 277
            E++S+    DE++  T+LS +
Sbjct: 562 FELESE----DEHSTVTLLSNV 579


>gi|449451309|ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
 gi|449526377|ref|XP_004170190.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 577

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 154/530 (29%), Positives = 270/530 (50%), Gaps = 70/530 (13%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK------------------------- 59
           LH +++K+    ++F++  L+  Y K NS+ +A K                         
Sbjct: 33  LHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKAFDDLPIRNIHSWNTILASYSRAGF 92

Query: 60  ------MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS-EIYA-DAYSFTSAL 111
                 +F E+P P++VS+N+LIS +   G Y +++N+F ++++  ++ A D  +  S  
Sbjct: 93  FSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVESMNIFRQMQQDFDLLALDEITLVSIA 152

Query: 112 AACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII 171
             C  LG+L+    +H   +   LE  +++ N ++D YGKCG  + +  +F  M ++D++
Sbjct: 153 GTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGKCGDPDASYSIFSRMKERDVV 212

Query: 172 SWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
           +W S++ A                        YN       Q   ++DA  + S MP  N
Sbjct: 213 TWTSMVVA------------------------YN-------QTSRLDDAFRVFSCMPVKN 241

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             +W +++   V      EAL LF +M  +    + +TF  +LS  A L+ +  G  IH 
Sbjct: 242 VHTWTALINALVKNKYSNEALDLFQQMLEEKTSPNAFTFVGVLSACADLALIAKGKEIHG 301

Query: 292 CVIKQGLD---ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
            +I++  +    ++ V +AL+D+YSK G V+ A  +F  +  K++V+WN++ITG+A+NG 
Sbjct: 302 LIIRRSSELNFPNVYVCNALIDLYSKSGDVKSARMLFNLILEKDVVSWNSLITGFAQNGL 361

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
             + +  F ++  V  ++P+ VTFL VL+ACSHT +  + +    E M K Y I+P++EH
Sbjct: 362 GREALLAFRKMTEV-GIRPNKVTFLAVLSACSHTGLSSEGLC-ILELMEKFYDIEPSLEH 419

Query: 409 CCSMIRLMGQKGEVWRAQRMIRELGFGSYGV-VWRALLSASGACSDLDVARISAAEVIKL 467
              MI + G++  +  A  +I     GS  V +W A+L A     +LD+A  +A  + ++
Sbjct: 420 YAVMIDMFGRENRLAEALDLISRAPNGSKHVGIWGAVLGACRIHENLDLAIRAAETLFEM 479

Query: 468 EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           E D+   YVML N++ +   W  A  +R  M ERG +KE   S IE+ N+
Sbjct: 480 EPDNAGRYVMLSNVFAAASRWMDAHNVRKLMEERGFKKEVAYSCIEIRNI 529



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 173/372 (46%), Gaps = 71/372 (19%)

Query: 111 LAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI 170
            + C Q   L++GM++HS ++K +L   + +AN LIDMY KC S+E+A   F ++  ++I
Sbjct: 18  FSKCIQHKHLRVGMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKAFDDLPIRNI 77

Query: 171 ISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSP 230
            SWN+++A+ +R G    A      +P+P+ +SYN +I+     G               
Sbjct: 78  HSWNTILASYSRAGFFSQARKVFDEMPHPNIVSYNTLISSFTHHG--------------- 122

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKD--VPMDEYTFSTMLSGIAGLSALTWGML 288
                      YV      E++++F +MQ     + +DE T  ++    A L AL +   
Sbjct: 123 ----------LYV------ESMNIFRQMQQDFDLLALDEITLVSIAGTCACLGALEFLRQ 166

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           +H   I  GL+ +++V +A++D Y KCG  + + S+F  +  +++VTW +M+  Y +   
Sbjct: 167 VHGAAIVIGLEFNMIVCNAIVDAYGKCGDPDASYSIFSRMKERDVVTWTSMVVAYNQTSR 226

Query: 349 L-------------------------------TKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           L                                + ++LF+Q+   +   P++ TF+ VL+
Sbjct: 227 LDDAFRVFSCMPVKNVHTWTALINALVKNKYSNEALDLFQQMLEEKT-SPNAFTFVGVLS 285

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIK---PTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           AC+  D+      +    +      +   P V  C ++I L  + G+V ++ RM+  L  
Sbjct: 286 ACA--DLALIAKGKEIHGLIIRRSSELNFPNVYVCNALIDLYSKSGDV-KSARMLFNLIL 342

Query: 435 GSYGVVWRALLS 446
               V W +L++
Sbjct: 343 EKDVVSWNSLIT 354



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 91/182 (50%), Gaps = 16/182 (8%)

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  GM +HS +IK  L   + +A+ L+DMYSKC  +E A   F  L  +N+ +WN ++  
Sbjct: 27  LRVGMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKAFDDLPIRNIHSWNTILAS 86

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           Y+R G  ++  ++F+++       P+ V++  ++++ +H  +  + ++  F  M +D+ +
Sbjct: 87  YSRAGFFSQARKVFDEMP-----HPNIVSYNTLISSFTHHGLYVESMN-IFRQMQQDFDL 140

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRE-------LGFGSYGVVWRALLSASGACSDLD 455
               E   +++ + G       A   +R+       +G     +V  A++ A G C D D
Sbjct: 141 LALDE--ITLVSIAGTCA-CLGALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGKCGDPD 197

Query: 456 VA 457
            +
Sbjct: 198 AS 199


>gi|356528072|ref|XP_003532629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 154/487 (31%), Positives = 262/487 (53%), Gaps = 14/487 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           N   S AL+  +     +  A   F  +P+    S ++LISG V++G+   A  +  E  
Sbjct: 165 NAVSSNALITGFLLNGDVDSAVDFFRTMPEHYSTSLSALISGLVRNGELDMAAGILCECG 224

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIV---------KYSLERGVVIANCLID 147
             +     +++ + +A  GQ G ++    +   I          +    R VV  N ++ 
Sbjct: 225 NGDDDL-VHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRRNVVSWNSMMM 283

Query: 148 MYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEV 207
            Y K G +  A  +F  M+++D  SWN++I+   +  N+E A      +P PD +S+N +
Sbjct: 284 CYVKAGDIVSARELFDRMVEQDTCSWNTMISGYVQISNMEEASKLFREMPIPDVLSWNLI 343

Query: 208 INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
           ++G AQ GD+  A      MP  N  SWNSI+ GY        A+ LF  MQ +    D 
Sbjct: 344 VSGFAQKGDLNLAKDFFERMPLKNLISWNSIIAGYEKNEDYKGAIQLFSRMQFEGERPDR 403

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
           +T S+++S   GL  L  G  IH  V K  +  S  + ++L+ MYS+CG +  A ++F  
Sbjct: 404 HTLSSVMSVCTGLVNLYLGKQIHQLVTKIVIPDS-PINNSLITMYSRCGAIVDACTVFNE 462

Query: 328 L-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
           +   K+++TWNAMI GYA +G   + +ELF+ +K ++ + P  +TF++V+ AC+H  +  
Sbjct: 463 IKLYKDVITWNAMIGGYASHGLAAEALELFKLMKRLK-IHPTYITFISVMNACAHAGL-V 520

Query: 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
           ++    F+SM  DYGI+  VEH  S++ ++G++G++  A  +I  + F     VW ALLS
Sbjct: 521 EEGRRQFKSMINDYGIERRVEHFASLVDILGRQGQLQEAMDLINTMPFKPDKAVWGALLS 580

Query: 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506
           A    +++++A ++A  +I+LE +S   YV+L N+Y + G WD A  +R  M E+ ++K+
Sbjct: 581 ACRVHNNVELALVAADALIRLEPESSAPYVLLYNIYANLGQWDDAESVRVLMEEKNVKKQ 640

Query: 507 AGCSWIE 513
           AG SW++
Sbjct: 641 AGYSWVD 647



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 165/374 (44%), Gaps = 61/374 (16%)

Query: 54  LADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA----------- 102
           L++A  +F  +     V+WNS+I+GYV   +  +A  LF E+ R ++ +           
Sbjct: 55  LSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLFDEMPRRDVVSWNLIVSGYFSC 114

Query: 103 -------------------DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
                              D  S+ + ++   + G +   +    K+     ER  V +N
Sbjct: 115 RGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQAL----KLFNAMPERNAVSSN 170

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD--- 200
            LI  +   G V+ A+  F  M +    S +++I+   RNG L++A G L    N D   
Sbjct: 171 ALITGFLLNGDVDSAVDFFRTMPEHYSTSLSALISGLVRNGELDMAAGILCECGNGDDDL 230

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSP-------------NSSSWNSILTGYVNRNR 247
             +YN +I G  Q G +E+A  +   +P               N  SWNS++  YV    
Sbjct: 231 VHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRRNVVSWNSMMMCYVKAGD 290

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG-MLIHSCVIKQGLDASIVVAS 306
           +  A  LF  M    V  D  +++TM+SG   +S +     L     I   L  +++V+ 
Sbjct: 291 IVSARELFDRM----VEQDTCSWNTMISGYVQISNMEEASKLFREMPIPDVLSWNLIVSG 346

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
                +++ G + +A   F  +  KNL++WN++I GY +N D    I+LF +++     +
Sbjct: 347 -----FAQKGDLNLAKDFFERMPLKNLISWNSIIAGYEKNEDYKGAIQLFSRMQ-FEGER 400

Query: 367 PDSVTFLNVLAACS 380
           PD  T  +V++ C+
Sbjct: 401 PDRHTLSSVMSVCT 414



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 123/288 (42%), Gaps = 46/288 (15%)

Query: 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175
           QL  ++   A  S   KY+    +  +N  I    + G + +A  +F  M  +D ++WNS
Sbjct: 16  QLPRIRYCHASASPTHKYNNSSPLNRSNKKISNLIRSGRLSEARALFDSMKHRDTVTWNS 75

Query: 176 VIAASARNGNLELAFGFLHRLPNPDTISYNEVINGI-----AQFGDIEDAIMILSSMPSP 230
           +I        +  A      +P  D +S+N +++G      ++F  +E+   +   MP  
Sbjct: 76  MITGYVHRREIARARQLFDEMPRRDVVSWNLIVSGYFSCRGSRF--VEEGRRLFELMPQR 133

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSK----------------DVPMDEYTFSTML 274
           +  SWN++++GY    R+ +AL LF  M  +                DV      F TM 
Sbjct: 134 DCVSWNTVISGYAKNGRMDQALKLFNAMPERNAVSSNALITGFLLNGDVDSAVDFFRTMP 193

Query: 275 SGIA-GLSALTWGMLIHS---------CVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
              +  LSAL  G++ +          C    G D  +   + L+  Y + G VE A  +
Sbjct: 194 EHYSTSLSALISGLVRNGELDMAAGILCECGNGDDDLVHAYNTLIAGYGQRGHVEEARRL 253

Query: 325 FRSLC-------------RKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           F  +              R+N+V+WN+M+  Y + GD+    ELF+++
Sbjct: 254 FDGIPDDRGDGDEGQRRFRRNVVSWNSMMMCYVKAGDIVSARELFDRM 301



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 153/387 (39%), Gaps = 107/387 (27%)

Query: 34  FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFV 93
           F  NV    ++M  Y K   +  A ++F  + +    SWN++ISGYVQ     +A  LF 
Sbjct: 271 FRRNVVSWNSMMMCYVKAGDIVSARELFDRMVEQDTCSWNTMISGYVQISNMEEASKLFR 330

Query: 94  EL----------------------------------------------ERSEIYADA--- 104
           E+                                              E++E Y  A   
Sbjct: 331 EMPIPDVLSWNLIVSGFAQKGDLNLAKDFFERMPLKNLISWNSIIAGYEKNEDYKGAIQL 390

Query: 105 -------------YSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGK 151
                        ++ +S ++ C  L +L LG  IH  + K  +     I N LI MY +
Sbjct: 391 FSRMQFEGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVTKIVIPDS-PINNSLITMYSR 449

Query: 152 CGSVEDAIGVFGEM-IDKDIISWNSVIAASARNG----NLELAFGFLHRLP-NPDTISYN 205
           CG++ DA  VF E+ + KD+I+WN++I   A +G     LEL F  + RL  +P  I++ 
Sbjct: 450 CGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGLAAEALEL-FKLMKRLKIHPTYITFI 508

Query: 206 EVINGIAQFGDIEDAIMILSSMPSP-----NSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            V+N  A  G +E+      SM +          + S++     + ++ EA+ L   M  
Sbjct: 509 SVMNACAHAGLVEEGRRQFKSMINDYGIERRVEHFASLVDILGRQGQLQEAMDLINTMPF 568

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL----------- 309
           K                       WG L+ +C +   ++ ++V A AL+           
Sbjct: 569 KP------------------DKAVWGALLSACRVHNNVELALVAADALIRLEPESSAPYV 610

Query: 310 ---DMYSKCGQVEIADSMFRSLCRKNL 333
              ++Y+  GQ + A+S+   +  KN+
Sbjct: 611 LLYNIYANLGQWDDAESVRVLMEEKNV 637


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 153/534 (28%), Positives = 272/534 (50%), Gaps = 43/534 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           QQ+HC  LK G    + VS +L+  Y K+     A  +F  + +  ++SWNS+I+G  Q+
Sbjct: 335 QQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQN 394

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS-LQLGMAIHSKIVKYSLERGVVI 141
           G   +A+ LF++L R  +  D Y+ TS L A   L   L L   +H   +K +      +
Sbjct: 395 GLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFV 454

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA--------------------SA 181
           +  LID Y +   +++A  +F E  + D+++WN+++A                       
Sbjct: 455 STALIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGE 513

Query: 182 RNGNLELAF-----GFLHRLPNPDTISYNEVINGI--------------AQFGDIEDAIM 222
           R+ +  LA      GFL  +     +    + +G                + GD+  A  
Sbjct: 514 RSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQF 573

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
              S+P P+  +W ++++G +       A H+F +M+   V  DE+T +T+    + L+A
Sbjct: 574 AFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTA 633

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G  IH+  +K        V ++L+DMY+KCG ++ A  +F+ +   N+  WNAM+ G
Sbjct: 634 LEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVG 693

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
            A++G+  + ++LF+Q+K++  ++PD VTF+ VL+ACSH+ +   +  ++  SM  DYGI
Sbjct: 694 LAQHGEGKETLQLFKQMKSL-GIKPDKVTFIGVLSACSHSGL-VSEAYKHMRSMHGDYGI 751

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
           KP +EH   +   +G+ G V +A+ +I  +   +   ++R LL+A     D +  +  A 
Sbjct: 752 KPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVAT 811

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           ++++LE      YV+L N+Y +   WD   + R  M+   ++K+ G SWIEV+N
Sbjct: 812 KLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKN 865



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 179/357 (50%), Gaps = 19/357 (5%)

Query: 39  FVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK-----YRKALNLFV 93
           F+   L+  Y K  SL  A ++F ++P   +VSWNS+++ Y QS +      ++A  LF 
Sbjct: 75  FLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFR 134

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
            L +  +Y    + +  L  C   G +    + H    K  L+    +A  L+++Y K G
Sbjct: 135 ILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFG 194

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLPNPDTISYNEVIN 209
            V++   +F EM  +D++ WN ++ A    G     ++L+  F     NP+ I+   ++ 
Sbjct: 195 KVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL-RLLA 253

Query: 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSI------LTGYVNRNRVPEALHLFGEMQSKDV 263
            I+  GD  DA  + S     ++SS + I      L+ Y++  +    L  F +M   DV
Sbjct: 254 RIS--GDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDV 311

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             D+ TF  ML+    + +L  G  +H   +K GLD  + V+++L++MY K  +   A +
Sbjct: 312 ECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFART 371

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +F ++  ++L++WN++I G A+NG   + + LF QL     L+PD  T  +VL A S
Sbjct: 372 VFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRC-GLKPDQYTMTSVLKAAS 427



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 160/351 (45%), Gaps = 40/351 (11%)

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           ++  N  +S Y+ SG+Y   L  F ++  S++  D  +F   LA   ++ SL LG  +H 
Sbjct: 280 IIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHC 339

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-NLE 187
             +K  L+  + ++N LI+MY K      A  VF  M ++D+ISWNSVIA  A+NG  +E
Sbjct: 340 MALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVE 399

Query: 188 LAFGFLHRLP---NPDTISYNEVINGIA-----------------QFGDIEDAIM----- 222
               F+  L     PD  +   V+   +                 +  ++ D+ +     
Sbjct: 400 AVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALI 459

Query: 223 -------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
                        IL    + +  +WN+++ GY   +   + L LF  M  +    D++T
Sbjct: 460 DAYSRNRCMKEAEILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFT 519

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
            +T+      L A+  G  +H+  IK G D  + V+S +LDMY KCG +  A   F S+ 
Sbjct: 520 LATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIP 579

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             + V W  MI+G   NG+  +   +F Q++ +  L PD  T   +  A S
Sbjct: 580 VPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVL-PDEFTIATLAKASS 629



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 161/375 (42%), Gaps = 30/375 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +  H Y  K G   + FV+ AL+  Y K   + +   +F E+P   VV WN ++  Y++ 
Sbjct: 165 ESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEM 224

Query: 83  GKYRKALNLFVELERSEIYADAYSF------TSALAACGQLGSLQLGMAIHSKIVKYSLE 136
           G   +A++L      S +  +  +       +   +  GQ+ S   G    S        
Sbjct: 225 GFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSV------- 277

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI----ISWNSVIAASARNGNLELA--- 189
             ++  N  +  Y   G     +  F +M++ D+    +++  ++A + +  +L L    
Sbjct: 278 SEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQV 337

Query: 190 --FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
                   L    T+S N +IN   +      A  +  +M   +  SWNS++ G      
Sbjct: 338 HCMALKLGLDLMLTVS-NSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGL 396

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL-SALTWGMLIHSCVIKQGLDASIVVAS 306
             EA+ LF ++    +  D+YT +++L   + L   L+    +H   IK    +   V++
Sbjct: 397 EVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVST 456

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKN--LVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
           AL+D YS+   ++ A+ +F    R N  LV WNAM+ GY ++ D  K ++LF  +    +
Sbjct: 457 ALIDAYSRNRCMKEAEILFE---RHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGE 513

Query: 365 LQPDSVTFLNVLAAC 379
            + D  T   V   C
Sbjct: 514 -RSDDFTLATVFKTC 527



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 94/189 (49%), Gaps = 2/189 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+ +  L +ASS L      +Q+H   LK    ++ FV T+L+  Y K  S+ DA+ +
Sbjct: 616 PDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCL 675

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I   ++ +WN+++ G  Q G+ ++ L LF +++   I  D  +F   L+AC   G +
Sbjct: 676 FKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLV 735

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
                 + S    Y ++  +   +CL D  G+ G V+ A  +   M ++     + +++A
Sbjct: 736 SEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLA 795

Query: 179 ASARNGNLE 187
           A    G+ E
Sbjct: 796 ACRVQGDTE 804



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 9/201 (4%)

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR-----VPEAL 252
           NP+    N +I+  ++ G +  A  +   MP  +  SWNSIL  Y   +      + +A 
Sbjct: 71  NPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAF 130

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDM 311
            LF  ++   V     T S ML  +   S   W     H    K GLD    VA AL+++
Sbjct: 131 LLFRILRQDVVYTSRMTLSPMLK-LCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNI 189

Query: 312 YSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371
           Y K G+V+    +F  +  +++V WN M+  Y   G   + I+L     +   L P+ +T
Sbjct: 190 YLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHS-SGLNPNEIT 248

Query: 372 FLNVLAACSHTDIPFDKVSEY 392
            L +LA  S  D    +V  +
Sbjct: 249 -LRLLARISGDDSDAGQVKSF 268



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 47/205 (22%)

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L LG   H++I+ +       + N LI MY KCGS+  A  VF +M D+D++SWNS++AA
Sbjct: 55  LMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAA 114

Query: 180 SARNG-----NLELAFGFLHRLPNPDTISYNE---------------------------- 206
            A++      N++ AF  L R+   D +  +                             
Sbjct: 115 YAQSSECVVENIQQAF-LLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACK 173

Query: 207 ------------VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
                       ++N   +FG +++  ++   MP  +   WN +L  Y+      EA+ L
Sbjct: 174 IGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDL 233

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAG 279
                S  +  +E T   +L+ I+G
Sbjct: 234 SSAFHSSGLNPNEITLR-LLARISG 257



 Score = 45.1 bits (105), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 11/173 (6%)

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           S L  G   H+ ++    +    + + L+ MYSKCG +  A  +F  +  ++LV+WN+++
Sbjct: 53  SDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSIL 112

Query: 341 TGYARNGDLTKVIELFEQ-LKTVRDLQPDSV-----TFLNVLAACSHTDIPFDKVSEYFE 394
             YA++ +   V+E  +Q     R L+ D V     T   +L  C H+   +   SE F 
Sbjct: 113 AAYAQSSEC--VVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVW--ASESFH 168

Query: 395 SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
                 G+        +++ +  + G+V   + +  E+ +    V+W  +L A
Sbjct: 169 GYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDV-VLWNLMLKA 220


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 150/494 (30%), Positives = 259/494 (52%), Gaps = 43/494 (8%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKIN-SLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           +H  ILK GF S+VFV  +L+GFY   + +L  A+++F E+P+  V+SWNS+IS Y+  G
Sbjct: 96  IHGEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRG 155

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           + + A+ L  ++                                        ER +V  N
Sbjct: 156 EIQSAIGLLDKMP---------------------------------------ERNIVTWN 176

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS 203
            ++    K G++E A  VF +M  ++ +SWNS+I+   R G++  A    +++P    +S
Sbjct: 177 SVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVS 236

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ-SKD 262
           +  +I+G A  GD++ A  I + MP  N  SWN++++GYV+ +   +AL +F  M  + +
Sbjct: 237 WTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGE 296

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
              D+ T  ++LS  A L +L  G  I+S + K  L  SI + +AL+DM++KCG VE A 
Sbjct: 297 CRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAK 356

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F  + ++ ++TW  M++G A NG   + I LF+++  +   +PD V F+ VL+AC+H 
Sbjct: 357 EVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKM-CLEGTKPDDVIFIAVLSACTHG 415

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  ++    F+ M +++GIKP +EH   M+ L+G+ G++  A R    +      V+W 
Sbjct: 416 GL-VEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVIWA 474

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
            LL       + D+ +    +++  E  +     ++ NL  S G W+     R  MR++ 
Sbjct: 475 TLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSASFGRWEDVLSFRVAMRQQR 534

Query: 503 LRKEAGCSWIEVEN 516
           + K  GCS I+V N
Sbjct: 535 MEKVPGCSSIQVGN 548



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  L  +L A + LG   + + ++ YI K+    ++ +  AL+  + K   + +A ++
Sbjct: 299 PDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEV 358

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  +++W +++SG   +GK R+A+NLF ++       D   F + L+AC   G +
Sbjct: 359 FHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLV 418

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G  +  ++V+ + ++  +    C++D+ G+ G +E+A+     M +  + + W +++ 
Sbjct: 419 EEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVIWATLLF 478

Query: 179 ASARNGNLELAFGFLHRL--PNPDTISYNEVINGI-AQFGDIEDAI 221
               +GN +L      ++    P   SY  +++ + A FG  ED +
Sbjct: 479 CCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSASFGRWEDVL 524


>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 139/493 (28%), Positives = 258/493 (52%), Gaps = 25/493 (5%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  I++ G   + F+ +  +     +++ +    +F  +  PS V WN+ I GY ++
Sbjct: 90  EQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSEN 149

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
                 ++LF+ ++RS+   D +++ S + AC ++  ++ G+A H   V+  +   V + 
Sbjct: 150 YSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVM 209

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
             LID+YGKCG +  A  VF EM +++++SW ++IA  A   +L  A      +P  + +
Sbjct: 210 TSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAV 269

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSS--SWNSILTGYVNRNRVPEALHLFGEMQS 260
           S+N +I+G  + GD+  A  +   MP  N    +W+++++G                   
Sbjct: 270 SWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALISG------------------- 310

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV-VASALLDMYSKCGQVE 319
            +V  DE+   +++S  + + +L     +   V K  +D     V +AL+DM +KCG ++
Sbjct: 311 -NVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMD 369

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F  + +++L+++ +M+ G + +G   + + LF ++     L PD V F  +L AC
Sbjct: 370 RATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLN-EGLTPDDVAFTVILTAC 428

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           S   +  D+   YFESM  DY I P+ +H   M+ L+G+ G +  A  +++ +    +  
Sbjct: 429 SRAGL-VDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAG 487

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
            W ALL A     D+++  + A ++ +LE  +   YV+L N+Y +   W   S++RN MR
Sbjct: 488 AWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMR 547

Query: 500 ERGLRKEAGCSWI 512
           ERG+RK  GCSWI
Sbjct: 548 ERGIRKIPGCSWI 560


>gi|225457491|ref|XP_002267777.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070
           [Vitis vinifera]
 gi|296087996|emb|CBI35279.3| unnamed protein product [Vitis vinifera]
          Length = 598

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 156/558 (27%), Positives = 273/558 (48%), Gaps = 55/558 (9%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           LLR  ++     + + LH  ++K    +++F++  ++  Y K   L  AHK+F   P  +
Sbjct: 41  LLRRFAETRDSQHGRALHAKLIKGPLHNSLFLNNHILNMYAKCGHLPHAHKLFDHFPHRN 100

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACG------------- 115
            VSW+ LI+G+VQ  +   AL LF ++  + +  + ++  SAL AC              
Sbjct: 101 AVSWSVLIAGFVQHNRPSCALVLFSQMHAAGVNINEFTLVSALHACSLYDNDSDNNEGYY 160

Query: 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175
               L     +++ +V+   E  V + N  +    +   + +A+ VF     KD++SWN+
Sbjct: 161 YSYYLSRLYQVYAFVVRLGFEWNVFLMNVFMTALIRSRKLAEALEVFEACRGKDVVSWNA 220

Query: 176 VIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGD--------------- 216
           V+A   +    E+  GF  R+      PD  +++ V++G+A  GD               
Sbjct: 221 VMAGLVQFCCGEVP-GFWRRMCCEGVKPDNFAFSGVLSGLAALGDGGMGVQVHGQLVKCG 279

Query: 217 --------------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
                               +E+ I     M   +  +WN +  G +N  +   AL L  
Sbjct: 280 HGGEVCIGNSLVDMYLKCGSLENGIKAFEEMVERDVCTWNQMAAGCLNCGKPGRALELIE 339

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           EM+   V M+++T +T L+  A L++L  G   H   IK G D  + V +ALLDMY+KCG
Sbjct: 340 EMRRSGVRMNKFTLATALTACANLASLEEGKKAHGLRIKLGNDVDVCVDNALLDMYAKCG 399

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            +  A  +F ++  +++V+W  MI G+A+NG   K +E+FEQ++      P+ +TF+ VL
Sbjct: 400 SMGDALKVFGTVEARSVVSWTTMIMGFAQNGQARKALEIFEQMRA-EGKAPNYITFICVL 458

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
            ACS   +  ++  EYF SM +D+GI P  +H   M+ ++G+ G +  A+ +IR + F +
Sbjct: 459 YACSQGGL-INEGWEYFLSMDRDHGISPGEDHYACMVDMLGRAGHIKEARELIRRMPFQA 517

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
             +VW+ LL A     D++   ++A + + L+      YV+L N++    NW     +R 
Sbjct: 518 SVLVWQTLLGACRVHGDVETGLLAAKQALSLDKHDSSTYVVLSNMFADGRNWKGVGSLRE 577

Query: 497 FMRERGLRKEAGCSWIEV 514
            M  R ++K  G SWI++
Sbjct: 578 LMETRDVKKMPGSSWIQL 595



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 141/320 (44%), Gaps = 27/320 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    +L   + LG      Q+H  ++K G    V +  +L+  Y K  SL +  K 
Sbjct: 247 PDNFAFSGVLSGLAALGDGGMGVQVHGQLVKCGHGGEVCIGNSLVDMYLKCGSLENGIKA 306

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+ +  V +WN + +G +  GK  +AL L  E+ RS +  + ++  +AL AC  L SL
Sbjct: 307 FEEMVERDVCTWNQMAAGCLNCGKPGRALELIEEMRRSGVRMNKFTLATALTACANLASL 366

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G   H   +K   +  V + N L+DMY KCGS+ DA+ VFG +  + ++SW ++I   
Sbjct: 367 EEGKKAHGLRIKLGNDVDVCVDNALLDMYAKCGSMGDALKVFGTVEARSVVSWTTMIMGF 426

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A+NG    A     ++      P+ I++  V+   +Q G I +      SM      SP 
Sbjct: 427 AQNGQARKALEIFEQMRAEGKAPNYITFICVLYACSQGGLINEGWEYFLSMDRDHGISPG 486

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  ++        + EA  L   M     P                S L W  L+ +
Sbjct: 487 EDHYACMVDMLGRAGHIKEARELIRRM-----PFQA-------------SVLVWQTLLGA 528

Query: 292 CVIKQGLDASIVVASALLDM 311
           C +   ++  ++ A   L +
Sbjct: 529 CRVHGDVETGLLAAKQALSL 548



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           DE  ++T+L   A       G  +H+ +IK  L  S+ + + +L+MY+KCG +  A  +F
Sbjct: 34  DEDLYATLLRRFAETRDSQHGRALHAKLIKGPLHNSLFLNNHILNMYAKCGHLPHAHKLF 93

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
                +N V+W+ +I G+ ++   +  + LF Q+     +  +  T ++ L ACS  D
Sbjct: 94  DHFPHRNAVSWSVLIAGFVQHNRPSCALVLFSQMHAA-GVNINEFTLVSALHACSLYD 150


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 153/496 (30%), Positives = 251/496 (50%), Gaps = 36/496 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINS---LADAHKMFVEIPQPSVVSWNSLISGY 79
           +Q+H  +LK+G + + +  T  + F     S   L  A  +F    +P    WN +I G+
Sbjct: 31  KQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGF 90

Query: 80  VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
             S +  ++L L+  +  S    +AY+F S L AC  L + +    IH++I K   E  V
Sbjct: 91  SCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDV 150

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
              N LI+ Y                               A  GN +LA     R+P P
Sbjct: 151 YAVNSLINSY-------------------------------AVTGNFKLAHLLFDRIPEP 179

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           D +S+N VI G  + G ++ A+ +   M   N+ SW ++++GYV  +   EAL LF EMQ
Sbjct: 180 DDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQ 239

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           + DV  D  + +  LS  A L AL  G  IHS + K  +    V+   L+DMY+KCG++E
Sbjct: 240 NSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEME 299

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F+++ +K++  W A+I+GYA +G   + I  F +++ +  ++P+ +TF  VL AC
Sbjct: 300 EALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKM-GIKPNVITFTAVLTAC 358

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           S+T +  ++    F SM +DY +KPT+EH   ++ L+G+ G +  A+R I+E+      V
Sbjct: 359 SYTGL-VEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAV 417

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W ALL A     ++++       +I ++      YV   N++     WD A+  R  M+
Sbjct: 418 IWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMK 477

Query: 500 ERGLRKEAGCSWIEVE 515
           E+G+ K  GCS I +E
Sbjct: 478 EQGVAKVPGCSTISLE 493



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 101/196 (51%), Gaps = 12/196 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L + L A + LG     + +H Y+ K+    +  +   L+  Y K   + +A ++
Sbjct: 245 PDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEV 304

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I + SV +W +LISGY   G  R+A++ F+E+++  I  +  +FT+ L AC   G +
Sbjct: 305 FKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLV 364

Query: 121 QLGMAIHSKIVKYSLERGVVIA------NCLIDMYGKCGSVEDAIGVFGEM-IDKDIISW 173
           + G     K++ YS+ER   +        C++D+ G+ G +++A     EM +  + + W
Sbjct: 365 EEG-----KLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIW 419

Query: 174 NSVIAASARNGNLELA 189
            +++ A   + N+EL 
Sbjct: 420 GALLKACRIHKNIELG 435


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 149/553 (26%), Positives = 279/553 (50%), Gaps = 39/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      +L   +  G     +++H   +K G  S VFV  +LM  Y K   + +A  +
Sbjct: 203 PNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVV 262

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    +VSWN+L++G V +G   +AL LF +   S       ++ + +  C  +  L
Sbjct: 263 FCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQL 322

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI-DKDIISWNSVIAA 179
            L   +HS ++K        +   L+D Y K G + +A+ +F  M   ++++SW ++I  
Sbjct: 323 GLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMING 382

Query: 180 SARNGNLELAFGFLHRLPN----PDTISYNEVING------------------------- 210
             +NG++ LA     R+      P+  +Y+ ++                           
Sbjct: 383 CIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLPPQIHAQVIKTNYECTSIVG 442

Query: 211 ------IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
                  ++  + E+A+ I   +   +  SW+++LT Y        A ++F +M    + 
Sbjct: 443 TALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLK 502

Query: 265 MDEYTFSTMLSGIAGLSA-LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
            +E+T S+++   A  +A +  G   H+  IK     ++ V+SAL+ MY++ G +E A  
Sbjct: 503 PNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQC 562

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F     ++LV+WN+M++GYA++G   K +++F Q++    ++ D VTFL+V+  C+H  
Sbjct: 563 IFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEA-EGIEMDGVTFLSVIMGCAHAG 621

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
           +  ++   YF+SM +DYGI PT+EH   M+ L  + G++  A  +I  + F +  +VWR 
Sbjct: 622 L-VEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRT 680

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           LL A     ++++ +++A +++ LE      YV+L N+Y++ G W     +R  M  + +
Sbjct: 681 LLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKV 740

Query: 504 RKEAGCSWIEVEN 516
           +KEAGCSWI+++N
Sbjct: 741 KKEAGCSWIQIKN 753



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 139/504 (27%), Positives = 243/504 (48%), Gaps = 56/504 (11%)

Query: 23  QQLHCYILKSGF-LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           +QLH   ++ G    +V V T+L+  Y K +S+ D  K+F  +P+ +VV+W SL++GY+Q
Sbjct: 123 KQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQ 182

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
            G     + LF  +    ++ ++ +F S L+     G + LG  +H++ VK+     V +
Sbjct: 183 DGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFV 242

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
            N L++MY KCG VE+A  VF  M  +D++SWN+++A    NG+   A    H   +  T
Sbjct: 243 CNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSIT 302

Query: 202 I-----------------------------------SYNEVINGI-------AQFGDIED 219
           +                                   SY  V+  +        Q G+  D
Sbjct: 303 MLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALD 362

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
             +++S   S N  SW +++ G +    VP A  LF  M+   V  +++T+ST+L+    
Sbjct: 363 IFLLMSG--SQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA--- 417

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
            S  +    IH+ VIK   + + +V +ALL  YSK    E A S+F+ + +K++V+W+AM
Sbjct: 418 -SVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAM 476

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKD 399
           +T YA+ GD      +F ++ T+  L+P+  T  +V+ AC+      D +   F +++  
Sbjct: 477 LTCYAQAGDSDGATNIFIKM-TMHGLKPNEFTISSVIDACASPTAGVD-LGRQFHAISIK 534

Query: 400 YGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG----ACSDLD 455
           +     +    +++ +  +KG +  AQ  I E       V W ++LS       +   LD
Sbjct: 535 HRCHDALCVSSALVSMYARKGSIESAQ-CIFERQTDRDLVSWNSMLSGYAQHGYSQKALD 593

Query: 456 VARISAAEVIKLEGDSDYVYVMLC 479
           V R   AE I+++G +    +M C
Sbjct: 594 VFRQMEAEGIEMDGVTFLSVIMGC 617



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 169/370 (45%), Gaps = 45/370 (12%)

Query: 51  INSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEI-YADAYSFTS 109
           +N    A + F EIP  + +  +  +  + + G   +AL+ F+++ R         +   
Sbjct: 51  LNDATGARQAFDEIPHRNTL--DHALFDHARRGSVHQALDHFLDVHRCHGGRVGGGALVG 108

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERG-VVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
            L  CG +    LG  +H   ++   +RG V +   L+DMY K  SV D   VF  M  +
Sbjct: 109 VLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKR 168

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISY-------------------- 204
           ++++W S++    ++G L        R+      P+++++                    
Sbjct: 169 NVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVH 228

Query: 205 ---------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
                          N ++N  A+ G +E+A ++   M + +  SWN+++ G V      
Sbjct: 229 AQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDL 288

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
           EAL LF + +S    + + T++T++   A +  L     +HS V+K+G  +   V +AL+
Sbjct: 289 EALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALM 348

Query: 310 DMYSKCGQVEIADSMFRSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           D YSK GQ+  A  +F  +   +N+V+W AMI G  +NGD+     LF +++    + P+
Sbjct: 349 DAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMRE-DGVAPN 407

Query: 369 SVTFLNVLAA 378
             T+  +L A
Sbjct: 408 DFTYSTILTA 417


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 163/537 (30%), Positives = 282/537 (52%), Gaps = 48/537 (8%)

Query: 23  QQLHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           +++H +IL++G +   + +S  L+  Y K  ++  A ++F  +     VSWN++IS   Q
Sbjct: 394 REVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQ 453

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           +G    A+  +  + +  I    ++  S L++C  L  L  G  +H   VK+ L+    +
Sbjct: 454 NGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSV 513

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV----IAASARNGNLELAFGFLHR-- 195
           +N L+ MYG CG+  ++  +F  M + DI+SWNS+    +++ A        F  + R  
Sbjct: 514 SNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSG 573

Query: 196 -LPNPDT-----------------------------ISYNEVINGI----AQFGDIEDAI 221
             PN  T                             I  N V N +    A+ GD++   
Sbjct: 574 LTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCE 633

Query: 222 MILSSMPS-PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
            + SSM    ++ SWNS+++GY+    + E +     M   +  +D  TFS +L+  A +
Sbjct: 634 QLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASV 693

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           +AL  GM +H+  I+  L++ +VV SALLDMYSKCG+++ A  +F S+ +KN  +WN+MI
Sbjct: 694 AALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMI 753

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           +GYAR+G   K +E+FE+++      PD VTF++VL+ACSH  +  D+  +YFE M +D+
Sbjct: 754 SGYARHGLGEKALEIFEEMQR-NGACPDHVTFVSVLSACSHAGL-VDRGLDYFE-MMEDH 810

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD---LDVA 457
           GI P +EH   +I L+G+ G++ + Q  I  +      ++WR +L A     D   +D+ 
Sbjct: 811 GILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLG 870

Query: 458 RISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           + ++  +++LE  +   YV+  N Y + G W+  +  R  M    ++KEAG SW+ +
Sbjct: 871 KEASRMLLELEPQNPVNYVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTL 927



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 180/388 (46%), Gaps = 59/388 (15%)

Query: 17  GWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLI 76
           G +   ++LH  ++K G   ++F+S  L+  Y K + LA A ++F  + + + VSW  L+
Sbjct: 70  GEEAAPERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLV 129

Query: 77  SGYVQSGKYRKALNLFVEL--ERSEI-YADAYSFTSALAACGQLGS--LQLGMAIHSKIV 131
           SGYV SG   +A  +F  +  E SE      ++F S L AC   G   L   + +H  + 
Sbjct: 130 SGYVLSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVS 189

Query: 132 KYSLERGVVIANCLIDMYGKC--GSVEDAIGVFGEMIDKDIISWNSVIAASARNG----N 185
           K        + N LI MYG C  G    A  VF     +D+I+WN++++  A+ G     
Sbjct: 190 KTIYASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVST 249

Query: 186 LELAFGFLHR------LPNPDTISY----------------------------------N 205
             L    LH        PN  T                                     +
Sbjct: 250 FTLFMAMLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGS 309

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD-VP 264
            +++  A+ G +++A  I  ++   N+ + N ++ G V ++   EA+ +F  M ++D   
Sbjct: 310 ALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIF--MGTRDSFV 367

Query: 265 MDEYTFSTMLSGIAGLS----ALTWGMLIHSCVIKQGL-DASIVVASALLDMYSKCGQVE 319
           ++  TF  +LS +A  S     L  G  +H  +++ GL D  I +++ L++MY+KCG ++
Sbjct: 368 VNTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAID 427

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNG 347
            A  +FR LC ++ V+WN +I+   +NG
Sbjct: 428 KASRVFRLLCARDRVSWNTIISVLDQNG 455



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+    +LL A S L      +Q+H  +LK G + +  V  ALM  Y K   +    ++
Sbjct: 576 PNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQL 635

Query: 61  FVEIP-QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F  +  +   VSWNS+ISGY+ +G  ++ ++    +  S    D  +F+  L AC  + +
Sbjct: 636 FSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAA 695

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+ GM +H+  ++  LE  VV+ + L+DMY KCG ++ A  VF  M  K+  SWNS+I+ 
Sbjct: 696 LERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISG 755

Query: 180 SARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAI 221
            AR+G  E A      +      PD +++  V++  +  G ++  +
Sbjct: 756 YARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGL 801



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 185/412 (44%), Gaps = 44/412 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +     L + + L   T  QQ+HC  +K G   +  VS AL+  Y    + +++ ++
Sbjct: 474 PSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEI 533

Query: 61  FVEIPQPSVVSWNSLISGYVQS-GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F  + +  +VSWNS++   V S     +++ +F  + RS +  +  +F + L+A   L  
Sbjct: 534 FNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSV 593

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIA 178
           L+LG  +H+ ++K+       + N L+  Y K G ++    +F  M   +D +SWNS+I+
Sbjct: 594 LELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMIS 653

Query: 179 ASARNGNLE----------------------------------------LAFGFLHRLPN 198
               NG+L+                                         AFG   +L +
Sbjct: 654 GYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLES 713

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
            D +  + +++  ++ G I+ A  + +SM   N  SWNS+++GY       +AL +F EM
Sbjct: 714 -DVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEM 772

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ- 317
           Q      D  TF ++LS  +    +  G+     +   G+   I   S ++D+  + G+ 
Sbjct: 773 QRNGACPDHVTFVSVLSACSHAGLVDRGLDYFEMMEDHGILPHIEHYSCVIDLLGRAGKL 832

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
           ++I + + R   + N + W  ++    ++ D  ++    E  + + +L+P +
Sbjct: 833 LKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLLELEPQN 884



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 74/362 (20%), Positives = 159/362 (43%), Gaps = 58/362 (16%)

Query: 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN 185
           +H ++VK  L   + ++N L+++Y K   +  A  VF  M++++ +SW  +++    +G 
Sbjct: 78  LHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGI 137

Query: 186 LELAF-----------GFLHRLP-------------NPDTISYNEVING----------- 210
            + AF            F    P              PD +++   ++G           
Sbjct: 138 TDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNT 197

Query: 211 ------IAQFGDIE-----DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                 I+ +G+        A  +  + P  +  +WN++++ Y  +  V     LF  M 
Sbjct: 198 TVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAML 257

Query: 260 SKDVPMD----EYTFSTMLSGIAGLSALTWGML--IHSCVIKQGLDASIVVASALLDMYS 313
             D  ++    E+TF ++++  + LS+ + G+L  + + V+K G  + + V SAL+  ++
Sbjct: 258 HDDSAIELRPNEHTFGSLITATS-LSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFA 316

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           + G ++ A  +F +L  +N VT N +I G  +     + + +F  + T      ++ TF+
Sbjct: 317 RHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIF--MGTRDSFVVNTDTFV 374

Query: 374 NVLAACSHTDIPFDKV---SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
            +L+A +   IP D +    E    + +   I   +     ++ +  + G + +A R+ R
Sbjct: 375 VLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFR 434

Query: 431 EL 432
            L
Sbjct: 435 LL 436


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 171/607 (28%), Positives = 287/607 (47%), Gaps = 104/607 (17%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           LL+   +    T  ++LHC ILK+      F+S  L+  Y K+ +LA AH +F  IPQP+
Sbjct: 11  LLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPN 70

Query: 69  VVSWNSL-------------------------------ISGYVQSGKYRKALNLF-VELE 96
           + SWN++                               ISGY   G    A+ ++ + L+
Sbjct: 71  LFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLK 130

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGK----- 151
            + +  +  +F++ L  C +   + LG  I+ +I+K+     V + + L+DMY K     
Sbjct: 131 DAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIY 190

Query: 152 --------------------------CGSVEDAIGVFGEMIDKDIISWNSVIAASARNG- 184
                                     CG +E++  +F  + ++D ISW  +I    +NG 
Sbjct: 191 DAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGL 250

Query: 185 ---------NLELA--------FG--------------------FLHRLPNPDTISY-NE 206
                     + LA        FG                    ++ R  + D +   + 
Sbjct: 251 EREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSA 310

Query: 207 VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
           +++  ++   I+ A  +   MP  N  SW ++L GY       EA+ +F EMQ   V  D
Sbjct: 311 LVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPD 370

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
           ++T  +++S  A L++L  G   H   +  GL + I V++AL+ +Y KCG  E +  +F 
Sbjct: 371 DFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFT 430

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
            +  ++ V+W A++ GYA+ G   + I LFE++     L+PD VTF+ VL+ACS   +  
Sbjct: 431 EMNIRDEVSWTALLAGYAQFGKANETIGLFERM-LAHGLKPDGVTFIGVLSACSRAGL-V 488

Query: 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
           +K  +YFESM K++GI P V+HC  +I L+G+ G +  A+  I  +      V W  LLS
Sbjct: 489 EKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLS 548

Query: 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506
           +     D+++ + +A  +I LE  +   YV+L +LY S G WD  + +R  MR++ +RKE
Sbjct: 549 SCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKE 608

Query: 507 AGCSWIE 513
            G SWI+
Sbjct: 609 PGYSWIK 615



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 102/194 (52%), Gaps = 8/194 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++ L  ++ + ++L       Q HC  L SG +S + VS AL+  Y K  S  ++H++
Sbjct: 369 PDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRL 428

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+     VSW +L++GY Q GK  + + LF  +    +  D  +F   L+AC + G +
Sbjct: 429 FTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLV 488

Query: 121 QLGMAIHSKIVKYSLERGVVI----ANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNS 175
           + G+     ++K   E G++       C+ID+ G+ G +E+A      M    D++ W +
Sbjct: 489 EKGLQYFESMIK---EHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWAT 545

Query: 176 VIAASARNGNLELA 189
           ++++   +G++E+ 
Sbjct: 546 LLSSCRVHGDMEIG 559



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 127/304 (41%), Gaps = 62/304 (20%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
           + S L  C +  +      +H  I+K   +    ++N LI  Y K G++  A  VF  + 
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
             ++ SWN++++  ++ G L       + +P  D +S+N  I+G A +G   DA+ +   
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           M          +    +N NR+                    TFSTML   +    +  G
Sbjct: 128 M----------LKDAAMNLNRI--------------------TFSTMLILCSKFRCVDLG 157

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSK-------------------------------C 315
             I+  ++K G  + + V S L+DMY+K                               C
Sbjct: 158 RQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRC 217

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G +E +  +F  L  ++ ++W  MITG  +NG   + +++F +++ +     D  TF +V
Sbjct: 218 GMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMR-LAGFAMDQFTFGSV 276

Query: 376 LAAC 379
           L AC
Sbjct: 277 LTAC 280


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 159/529 (30%), Positives = 282/529 (53%), Gaps = 46/529 (8%)

Query: 30  LKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKAL 89
           L S F+ + FV ++ +  Y ++  +  A ++F    + +   WN++I GYVQ+    +A+
Sbjct: 247 LGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAI 306

Query: 90  NLFVELERSEIYA-DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
           +LFV++  SE +  D  +F SAL A  QL  L+LG  +H+ I+K S    VVI N +I M
Sbjct: 307 DLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVM 366

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLPNPDTISY 204
           Y +CGS+  +  VF  M+++D+++WN++++A  +NG     L L F    +    D+++ 
Sbjct: 367 YSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTL 426

Query: 205 NEVI---------------------NGI-------------AQFGDIEDAIMIL--SSMP 228
             ++                     +GI             A+ G I  A  +   +S  
Sbjct: 427 TALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDSYLIDMYAKSGLITTAQQLFEKNSDY 486

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             + ++WN+++ GY       E   +F +M  ++V  +  T +++L     +  +  G  
Sbjct: 487 DRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQ 546

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           IH   I+  L+ ++ V +ALLDMYSK G +  A+++F     KN VT+  MI+ Y ++G 
Sbjct: 547 IHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGM 606

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
             + + LF  +     ++PDSVTF+ +L+ACS+  +  D+    F+SM ++Y I+P+ EH
Sbjct: 607 GERALSLFHAMLG-SGIKPDSVTFVAILSACSYAGL-VDEGLRIFQSMEREYKIQPSAEH 664

Query: 409 CCSMIRLMGQKGEVWRAQRMIRELG-FGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
            C +  ++G+ G V  A   ++ LG  G+   +W +LL A     + ++ ++ A +++++
Sbjct: 665 YCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEM 724

Query: 468 EGDSDYV--YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           E  S     +V+L N+Y + GNWD    +R  MR++GL KEAGCSW+EV
Sbjct: 725 EKGSSLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEV 773



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 178/383 (46%), Gaps = 59/383 (15%)

Query: 56  DAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA-DAYSFTSALAAC 114
            A  +F  IP+P+ V WN++I G++ +     AL  +  +  S     D+Y+F+S L AC
Sbjct: 55  QALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKAC 114

Query: 115 GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIG-------------V 161
            Q  SL+LG A+H  +++       ++ N L++MY  C +    +G             V
Sbjct: 115 AQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRV 174

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGI------ 211
           F  M  +++++WN++I+   +   L  AF     +      P  +S+  V   +      
Sbjct: 175 FDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDY 234

Query: 212 -------------------------------AQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                                          A+ G ++ A  I       N+  WN+++ 
Sbjct: 235 DNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIG 294

Query: 241 GYVNRNRVPEALHLFGE-MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           GYV  N   EA+ LF + M+S+   +D+ TF + L+ I+ L  L  G  +H+ ++K    
Sbjct: 295 GYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTI 354

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG-DLTKVIELFEQ 358
             +V+ +A++ MYS+CG +  +  +F ++  +++VTWN M++ + +NG D   ++ +F  
Sbjct: 355 LQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAM 414

Query: 359 LKTVRDLQPDSVTFLNVLAACSH 381
            K  +    DSVT   +L+  S+
Sbjct: 415 QK--QGFMVDSVTLTALLSLASN 435



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/455 (23%), Positives = 197/455 (43%), Gaps = 77/455 (16%)

Query: 1   PNEYVLFHL-LRASSDLGWDTY--------CQQ---------LHCYILKSGFLSNVFVST 42
           P + +LF+  +RAS    +D+Y        C Q         LHC++L+S F S+  V  
Sbjct: 84  PIDALLFYARMRASPSPKFDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYN 143

Query: 43  ALMGFYRK-------------INSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKAL 89
           +L+  Y                N+     ++F  + + +VV+WN++IS YV++ +  +A 
Sbjct: 144 SLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAF 203

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE--RGVVIANCLID 147
            +F  + R  I     SF +   A  ++        ++  +VK   +      + +  I 
Sbjct: 204 KMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIF 263

Query: 148 MYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN---------------------- 185
           MY + G V+ A  +F   ++++   WN++I    +N                        
Sbjct: 264 MYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDV 323

Query: 186 --------------LELAFGFLHRLPNPDTISYNEVINGI----AQFGDIEDAIMILSSM 227
                         LEL       +    TI    ++N I    ++ G I  +  + S+M
Sbjct: 324 TFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNM 383

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
              +  +WN++++ +V      E L L   MQ +   +D  T + +LS  + L +   G 
Sbjct: 384 LERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGK 443

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR--SLCRKNLVTWNAMITGYAR 345
             H+ +I+ G+     + S L+DMY+K G +  A  +F   S   ++  TWNAMI GY +
Sbjct: 444 QAHAYLIRHGIQFE-GMDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQ 502

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           NG   +   +F ++   ++++P++VT  ++L AC+
Sbjct: 503 NGLSEEGFAVFRKM-IEQNVRPNAVTLASILPACN 536



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 147/314 (46%), Gaps = 29/314 (9%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ-- 66
           LL  +S+L      +Q H Y+++ G +    + + L+  Y K   +  A ++F +     
Sbjct: 429 LLSLASNLRSQEIGKQAHAYLIRHG-IQFEGMDSYLIDMYAKSGLITTAQQLFEKNSDYD 487

Query: 67  PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI 126
               +WN++I+GY Q+G   +   +F ++    +  +A +  S L AC  +G++ LG  I
Sbjct: 488 RDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQI 547

Query: 127 HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNL 186
           H   ++  L R V +   L+DMY K G++  A  VF E ++K+ +++ ++I++  ++G  
Sbjct: 548 HGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMG 607

Query: 187 ELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPNSSSWNS 237
           E A    H +      PD++++  +++  +  G +++ + I  SM       P++  +  
Sbjct: 608 ERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCC 667

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           +        RV EA                Y F   L G  G +   WG L+ +C I   
Sbjct: 668 VADMLGRVGRVVEA----------------YEFVKGL-GEEGNTFGIWGSLLGACRIHGE 710

Query: 298 LDASIVVASALLDM 311
            +   VVA+ LL+M
Sbjct: 711 FELGKVVANKLLEM 724



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 19/180 (10%)

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP-MDEYTFSTM 273
           G    A+ +  S+P P +  WN+I+ G++  N   +AL  +  M++   P  D YTFS+ 
Sbjct: 51  GHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSST 110

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC-------------GQVEI 320
           L   A   +L  G  +H  V++    +S +V ++LL+MYS C                ++
Sbjct: 111 LKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDL 170

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL--QPDSVTFLNVLAA 378
              +F ++ ++N+V WN MI+ Y +     ++IE F+  +T+  +  +P  V+F+NV  A
Sbjct: 171 VRRVFDTMRKRNVVAWNTMISWYVKT---ERLIEAFKMFRTMMRMGIRPTPVSFVNVFPA 227



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 96/193 (49%), Gaps = 5/193 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  +L A + +G     +Q+H + ++     NVFV TAL+  Y K  ++  A  +
Sbjct: 523 PNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENV 582

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E  + + V++ ++IS Y Q G   +AL+LF  +  S I  D+ +F + L+AC   G +
Sbjct: 583 FAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLV 642

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDA---IGVFGEMIDKDIISWNSV 176
             G+ I   + + Y ++       C+ DM G+ G V +A   +   GE  +   I W S+
Sbjct: 643 DEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGI-WGSL 701

Query: 177 IAASARNGNLELA 189
           + A   +G  EL 
Sbjct: 702 LGACRIHGEFELG 714


>gi|255558480|ref|XP_002520265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540484|gb|EEF42051.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 681

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 158/543 (29%), Positives = 262/543 (48%), Gaps = 64/543 (11%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYIL-------------------KSGFLSNV---- 38
           + +VL  ++ A +DLG   Y +Q+H  IL                   K G L       
Sbjct: 172 DTFVLASVIGACADLGAIEYGKQVHARILMDDVELDSVLISSLINLYAKCGHLDTANYVL 231

Query: 39  --------FVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALN 90
                   F  +AL+  Y     ++DA ++F     P  V WNSLISGYV + +  KA  
Sbjct: 232 KMMDEVDDFSLSALIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISGYVNNHEEMKAFA 291

Query: 91  LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
           L  E++ + +  D+ + T  L+AC   G+ Q    +H  + K  L   V++A+  ID Y 
Sbjct: 292 LVNEMKNNRVQVDSSTITVILSACSSTGNAQYAKQMHGYVCKVGLIDSVIVASAFIDAYS 351

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVING 210
           KC +  DA  +F E                               L   DT+  N +I  
Sbjct: 352 KCRNPNDACKLFSE-------------------------------LKAYDTVLLNSMITA 380

Query: 211 IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
               G I DA  I  +MPS +  SWNSI+ G        EAL +FG+M   D+ MD ++ 
Sbjct: 381 YCNCGRIRDAKNIFETMPSKSLISWNSIIVGLAQNAYPLEALDVFGKMNKLDLRMDRFSL 440

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
           ++++S  A +S+L  G  + +  I  GL++   V+++L+D Y KCG +E    +F S+ +
Sbjct: 441 ASVISACACISSLELGEQVFARAIITGLESDQAVSTSLVDFYCKCGFIENGRKLFDSMIK 500

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
            + V+WN+M+ GYA NG   + + LF ++K    L+P  +TF  VL+AC H  +  ++  
Sbjct: 501 TDEVSWNSMLMGYATNGYGLETLTLFNEMKQA-GLRPTDITFTGVLSACDHCGL-VEEGR 558

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450
           ++F  M  DY I P +EH   M+ L  + G +  A  ++  + F +   +W ++L    A
Sbjct: 559 KWFNIMKYDYHIDPGIEHYSCMVDLFARAGCLKEALNLVEHMPFEADCSMWSSVLRGCVA 618

Query: 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCS 510
             D D+ +  A ++I+L  +S   YV L  ++ + G+W+ ++++R  M E+ ++K  G S
Sbjct: 619 HGDKDLGKKVAQQIIQLNPESSSAYVQLSGIFATSGDWESSALVRKIMTEKQVKKHPGFS 678

Query: 511 WIE 513
           W +
Sbjct: 679 WAD 681



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 180/367 (49%), Gaps = 66/367 (17%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY---ADA 104
           + K   L  A K+F E+P+ + V+WNS+I GY ++G  R+A+ LF EL  + +     D 
Sbjct: 114 FAKAGELDVAKKLFNEMPRRNGVAWNSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDT 173

Query: 105 YSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGE 164
           +   S + AC  LG+++ G  +H++I+   +E   V+ + LI++Y KCG ++ A  V  +
Sbjct: 174 FVLASVIGACADLGAIEYGKQVHARILMDDVELDSVLISSLINLYAKCGHLDTANYVL-K 232

Query: 165 MIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMIL 224
           M+D+                               D  S + +I G A  G + DA+ I 
Sbjct: 233 MMDE------------------------------VDDFSLSALIMGYANCGRMSDAVRIF 262

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
            +  +P    WNS+++GYVN +   +A  L  EM++  V +D  T + +LS  +      
Sbjct: 263 RTKSNPCFVVWNSLISGYVNNHEEMKAFALVNEMKNNRVQVDSSTITVILSACSSTGNAQ 322

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSK------------------------------ 314
           +   +H  V K GL  S++VASA +D YSK                              
Sbjct: 323 YAKQMHGYVCKVGLIDSVIVASAFIDAYSKCRNPNDACKLFSELKAYDTVLLNSMITAYC 382

Query: 315 -CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
            CG++  A ++F ++  K+L++WN++I G A+N    + +++F ++  + DL+ D  +  
Sbjct: 383 NCGRIRDAKNIFETMPSKSLISWNSIIVGLAQNAYPLEALDVFGKMNKL-DLRMDRFSLA 441

Query: 374 NVLAACS 380
           +V++AC+
Sbjct: 442 SVISACA 448



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 149/300 (49%), Gaps = 37/300 (12%)

Query: 119 SLQLGMAIHSKIVKYSLERGVV-IANCLIDMYGKCG-SVEDAIGVFGEMIDKDIISWNSV 176
           S+  G  +H   +K  L    V +AN L+ MY +CG ++ DA  +F EM +++  SWN++
Sbjct: 20  SIHQGKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTDAHNLFDEMPERNCFSWNTM 79

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
           I    R G+ E +      +P  +  S+N VI+G A+ G+++ A  + + MP  N  +WN
Sbjct: 80  IEGYMRVGDKERSLKLFDLMPQKNDYSWNVVISGFAKAGELDVAKKLFNEMPRRNGVAWN 139

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPM---DEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           S++ GY       EA+ LF E+ S  +     D +  ++++   A L A+ +G  +H+ +
Sbjct: 140 SMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVIGACADLGAIEYGKQVHARI 199

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIAD------------------------------- 322
           +   ++   V+ S+L+++Y+KCG ++ A+                               
Sbjct: 200 LMDDVELDSVLISSLINLYAKCGHLDTANYVLKMMDEVDDFSLSALIMGYANCGRMSDAV 259

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +FR+      V WN++I+GY  N +  K   L  ++K  R +Q DS T   +L+ACS T
Sbjct: 260 RIFRTKSNPCFVVWNSLISGYVNNHEEMKAFALVNEMKNNR-VQVDSSTITVILSACSST 318



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 112/243 (46%), Gaps = 24/243 (9%)

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGL-DASIVVASALLDMYSKCG-QVEIADSMFR 326
           + + +L  +   S++  G  +H   +K+GL +A++ +A+ LL MY++CG  +  A ++F 
Sbjct: 7   SLARLLQSLNTHSSIHQGKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTDAHNLFD 66

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF-LNVLAACSHTDIP 385
            +  +N  +WN MI GY R GD  + ++LF       DL P    +  NV+ +       
Sbjct: 67  EMPERNCFSWNTMIEGYMRVGDKERSLKLF-------DLMPQKNDYSWNVVISGFAKAGE 119

Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG----SYGVVW 441
            D   + F  M +  G+        SMI    + G    A  + +EL       S G  +
Sbjct: 120 LDVAKKLFNEMPRRNGVAWN-----SMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTF 174

Query: 442 RALLSASGACSDL---DVARISAAEVIKLEGDSDYVYV-MLCNLYTSHGNWDVASVMRNF 497
             L S  GAC+DL   +  +   A ++  + + D V +  L NLY   G+ D A+ +   
Sbjct: 175 -VLASVIGACADLGAIEYGKQVHARILMDDVELDSVLISSLINLYAKCGHLDTANYVLKM 233

Query: 498 MRE 500
           M E
Sbjct: 234 MDE 236


>gi|449450760|ref|XP_004143130.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Cucumis sativus]
 gi|449496662|ref|XP_004160192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Cucumis sativus]
          Length = 547

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 155/502 (30%), Positives = 254/502 (50%), Gaps = 9/502 (1%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           + + LH  ++  G       +   + FY     + DA  +F +IP+ +   W  LI  Y 
Sbjct: 46  FGRSLHARLIIDGSARLTHFAAKFIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYS 105

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + G Y +AL++F EL+R  +    Y   S L ACG L     G  +H+ I+K SLE    
Sbjct: 106 RCGYYPEALSVFCELQRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAY 165

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP--- 197
           + + LIDMY K G VE A  VF  M  KD+++ N++++  A +G  E A   +  +    
Sbjct: 166 VCSALIDMYAKSGEVEKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLG 225

Query: 198 -NPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PNSSSWNSILTGYVNRNRVPEAL 252
             P+ +++N ++ G +Q G+ E    +   M +    P+  SW S+++G+V   R  EA 
Sbjct: 226 IKPNLVTWNTLVTGFSQIGEEEMVRELFKEMEANGIEPDVVSWTSVISGFVQNFRNEEAF 285

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
             F  M +        T S++L   A +     G  IH   +  G++  + V +AL+DMY
Sbjct: 286 DTFRRMLNAGFHPTSATISSLLPACASVGNGRCGKEIHGHSLALGVEKDVYVRTALVDMY 345

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
           +KCG    A  +F  +  +N  TWN+MI GYA +G   + IELF Q+K   + + D +TF
Sbjct: 346 AKCGYFYEAKILFWRMSERNSATWNSMIFGYANHGYCNEAIELFHQMKDDDEKKLDHLTF 405

Query: 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
             +L AC+H  +  D     F+ M   YGI P VEH   M+ + G+ G++  A  +I+ +
Sbjct: 406 TAILTACAHAGL-VDLGRSLFQLMQSKYGIVPRVEHYACMVDVFGRAGKLAEAYDLIKTM 464

Query: 433 GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVAS 492
                  VW ALL A     ++++A  +A  + +LE  S    ++L ++Y + G+W    
Sbjct: 465 PVKPDLYVWGALLGACRKHGEIELAEEAAKHLSELEPGSVGNSLLLSDIYANAGSWGHVV 524

Query: 493 VMRNFMRERGLRKEAGCSWIEV 514
            ++  M++R ++K  GCSWIE 
Sbjct: 525 KLKKMMKKRKMKKFPGCSWIET 546



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 158/401 (39%), Gaps = 104/401 (25%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+EY++  +L+A   L   T  ++LH  ILK+   S+ +V +AL+  Y K   +  A ++
Sbjct: 127 PSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEVEKARRV 186

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALN------------------------------ 90
           F  +    +V+ N+++SGY   G   +ALN                              
Sbjct: 187 FESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKPNLVTWNTLVTGFSQIGEE 246

Query: 91  -----LFVELERSEIYADAYSFTSALA--------------------------------- 112
                LF E+E + I  D  S+TS ++                                 
Sbjct: 247 EMVRELFKEMEANGIEPDVVSWTSVISGFVQNFRNEEAFDTFRRMLNAGFHPTSATISSL 306

Query: 113 --ACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI 170
             AC  +G+ + G  IH   +   +E+ V +   L+DMY KCG   +A  +F  M +++ 
Sbjct: 307 LPACASVGNGRCGKEIHGHSLALGVEKDVYVRTALVDMYAKCGYFYEAKILFWRMSERNS 366

Query: 171 ISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSP 230
            +WNS+I   A +G    A    H++ + D    + +                       
Sbjct: 367 ATWNSMIFGYANHGYCNEAIELFHQMKDDDEKKLDHL----------------------- 403

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKD--VP-MDEYTFSTMLSGIAGLSALTWGM 287
              ++ +ILT   +   V     LF  MQSK   VP ++ Y     + G AG  A  +  
Sbjct: 404 ---TFTAILTACAHAGLVDLGRSLFQLMQSKYGIVPRVEHYACMVDVFGRAGKLAEAYD- 459

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           LI +  +K  L     V  ALL    K G++E+A+   + L
Sbjct: 460 LIKTMPVKPDL----YVWGALLGACRKHGEIELAEEAAKHL 496



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 121/288 (42%), Gaps = 21/288 (7%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
           +   +  CG+   L  G ++H++++     R    A   I  Y  CG ++DA  +F ++ 
Sbjct: 31  YIELIETCGRNRDLNFGRSLHARLIIDGSARLTHFAAKFIAFYAACGKIKDARILFDKIP 90

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDA-- 220
             +   W  +I A +R G    A      L      P       V+       +      
Sbjct: 91  RTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLKACGHLSEKTTGRK 150

Query: 221 --IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
              +IL +    ++   ++++  Y     V +A  +F  M  KD+       + M+SG A
Sbjct: 151 LHTLILKNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDL----VALNAMVSGYA 206

Query: 279 --GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL----CRKN 332
             GL+     ++    V+  G+  ++V  + L+  +S+ G+ E+   +F+ +       +
Sbjct: 207 HHGLAEEALNLVEEMQVL--GIKPNLVTWNTLVTGFSQIGEEEMVRELFKEMEANGIEPD 264

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +V+W ++I+G+ +N    +  + F ++       P S T  ++L AC+
Sbjct: 265 VVSWTSVISGFVQNFRNEEAFDTFRRMLNA-GFHPTSATISSLLPACA 311



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 3/150 (2%)

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L +G  +H+ +I  G       A+  +  Y+ CG+++ A  +F  + R N   W  +I  
Sbjct: 44  LNFGRSLHARLIIDGSARLTHFAAKFIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGA 103

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           Y+R G   + + +F +L+    L+P      +VL AC H  +          ++     +
Sbjct: 104 YSRCGYYPEALSVFCELQR-GGLRPSEYIIPSVLKACGH--LSEKTTGRKLHTLILKNSL 160

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
           +     C ++I +  + GEV +A+R+   +
Sbjct: 161 ESDAYVCSALIDMYAKSGEVEKARRVFESM 190


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 169/558 (30%), Positives = 273/558 (48%), Gaps = 48/558 (8%)

Query: 8   HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFY---RKINSLADAHKMFVEI 64
           HL      L    + Q+LH  +LK G   +   ++ L+  Y   R++ +        V +
Sbjct: 100 HLASLPHGLPRLRHVQELHAQLLKQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVAL 159

Query: 65  PQPSVVS-----WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF-TSALAACGQLG 118
           P     S       +L+  Y  +     AL +F+++   +     YSF   ALAA G   
Sbjct: 160 PNSPFPSSTTLLTKTLLRAYALNSLPHAALAVFLDVPLRQRGTFTYSFLIKALAAAG--- 216

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            L      H+ +VK        + N LID Y K   + DA  VF EM  +D++SWN+ +A
Sbjct: 217 -LTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMA 275

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
           A  R G ++ A      +P  DT+S+N +++G A+ G+ E A  +   MP  N  SW+++
Sbjct: 276 AMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTV 335

Query: 239 LTGYVNR----------NRVP---------------------EALHLFGEMQSKDVPMDE 267
           ++ Y  +          +++P                     EA  LF EM    + +D 
Sbjct: 336 VSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDV 395

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
               ++L+  A   +L  G  IH  V ++ L  S +V +AL+DM+ KCG V  AD +F +
Sbjct: 396 IAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDT 455

Query: 328 -LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
            +  K+LV+WN +I G+A +G   K +ELF Q+K  +   PD+VT +NVL+AC+H  +  
Sbjct: 456 EIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQ-QGFHPDAVTLINVLSACTHMGL-V 513

Query: 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
           ++   +F +M  DYGIKP +EH   M+ L+G+ G +  A  MI+ + +    V+W +LLS
Sbjct: 514 EEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLS 573

Query: 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506
           A     +++ A ++  E+  L+  S   Y +L N+Y   G W   +  R  M+  G +K 
Sbjct: 574 ACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKT 633

Query: 507 AGCSWIEVENVAAHSSNI 524
           AG SWIE+ N A H   +
Sbjct: 634 AGSSWIEL-NEAFHEFTV 650


>gi|357511423|ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 607

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 144/486 (29%), Positives = 257/486 (52%), Gaps = 5/486 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q H  + ++    N+     +M  Y + N +   H +F ++P    VSWN ++SG+ ++
Sbjct: 25  KQAHKLLDENLLSCNIVSWNMVMTAYLQHNQIGPVHDLFDKMPLKDAVSWNIMLSGFQRT 84

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
                    F+++ R+ +  + Y+ ++ L A        L   +H+          V + 
Sbjct: 85  RNSEGLYRCFLQMGRAGVVPNDYTISTLLRAVISTELDVLVRQVHALAFHLGHYLNVFVG 144

Query: 143 NCLIDMYGKCGSVEDAIG-VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
           + LI  Y      E+A+G  F ++  KD+ SWN+++++    G    A     ++P  + 
Sbjct: 145 SSLIRAYAGLKE-EEALGRAFNDISMKDVTSWNALVSSYMELGKFVDAQTAFDQMPQRNI 203

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           IS+  ++NG  +   +  A  +   M   N  SW ++++GYV   R  +AL LF  M   
Sbjct: 204 ISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMISGYVQNKRFVDALKLFVLMFKT 263

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           +   + +TFS++L   AG S+L  G+ +H C+IK G+   ++  ++L+DMY+KCG ++ A
Sbjct: 264 ETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIANDVIWLTSLVDMYAKCGDMDAA 323

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F S+  KNLV+WNA+I GYA +G  T+ +E F+++K V    PD VTF+NVL+AC H
Sbjct: 324 FGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMKVVG--TPDEVTFVNVLSACVH 381

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  ++  ++F  M   YGI+  +EH   M+ L G+ G    A+ +I+ + F    V+W
Sbjct: 382 AGL-VEEGEKHFTDMLTKYGIQAEMEHYSCMVDLYGRAGRFDEAENLIKNMPFEPDVVLW 440

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL+A G  S+L++   +A  + +LE      Y +L  +    G W   + +R+ M+ER
Sbjct: 441 GALLAACGLHSNLELGEYAAERIRRLESSHPVSYSVLSKIQGEKGVWSSVNELRDTMKER 500

Query: 502 GLRKEA 507
           G++K+ 
Sbjct: 501 GIKKQT 506



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 198/438 (45%), Gaps = 32/438 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+Y +  LLRA      D   +Q+H      G   NVFV ++L+  Y  +       + 
Sbjct: 104 PNDYTISTLLRAVISTELDVLVRQVHALAFHLGHYLNVFVGSSLIRAYAGLKEEEALGRA 163

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +I    V SWN+L+S Y++ GK+  A   F ++ +  I     S+T+ +   G + + 
Sbjct: 164 FNDISMKDVTSWNALVSSYMELGKFVDAQTAFDQMPQRNI----ISWTTLVN--GYVKNK 217

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI----ISWNSV 176
           Q+  A    +     ER VV    +I  Y +     DA+ +F  M   +      +++SV
Sbjct: 218 QVNKA--RSVFDDMSERNVVSWTAMISGYVQNKRFVDALKLFVLMFKTETRPNHFTFSSV 275

Query: 177 IAASARNGNLELAFGFLHR------LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSP 230
           + A A + +L +    LH       + N D I    +++  A+ GD++ A  +  S+   
Sbjct: 276 LDACAGSSSLIMGLQ-LHPCIIKSGIAN-DVIWLTSLVDMYAKCGDMDAAFGVFESIRDK 333

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG-MLI 289
           N  SWN+I+ GY +      AL  F  M+    P DE TF  +LS       +  G    
Sbjct: 334 NLVSWNAIIGGYASHGLATRALEEFDRMKVVGTP-DEVTFVNVLSACVHAGLVEEGEKHF 392

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGD 348
              + K G+ A +   S ++D+Y + G+ + A+++ +++    ++V W A++     + +
Sbjct: 393 TDMLTKYGIQAEMEHYSCMVDLYGRAGRFDEAENLIKNMPFEPDVVLWGALLAACGLHSN 452

Query: 349 LTKVIELFE-QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK---P 404
           L    EL E   + +R L+       +VL+        +  V+E  ++M K+ GIK   P
Sbjct: 453 L----ELGEYAAERIRRLESSHPVSYSVLSKIQGEKGVWSSVNELRDTM-KERGIKKQTP 507

Query: 405 TVEHCCSMIRLMGQKGEV 422
             ++C    +L   K ++
Sbjct: 508 GDKNCAQFSKLDSIKTKI 525


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 166/558 (29%), Positives = 274/558 (49%), Gaps = 67/558 (12%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH Y L+ G     F + ALM  Y K+  + D+  +F       +VSWN++IS + QS
Sbjct: 217 KQLHGYSLRVGD-QKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQS 275

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS-LERGVVI 141
            ++ +AL  F  +    +  D  +  S L AC  L  L +G  IH+ +++ + L     +
Sbjct: 276 DRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFV 335

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR------ 195
            + L+DMY  C  VE    VF  ++ + I  WN++I+  ARNG  E A            
Sbjct: 336 GSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAG 395

Query: 196 -LPNPDTI-------------SYNEVINGIA--------------------QFGDIEDAI 221
            LPN  T+             S  E I+G A                    + G ++ + 
Sbjct: 396 LLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISE 455

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD-----------------VP 264
            I  SM   +  SWN+++TGYV   R   AL L  EMQ  +                   
Sbjct: 456 TIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYK 515

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
            +  T  T+L G A L+A+  G  IH+  I+  L + I V SAL+DMY+KCG + ++  +
Sbjct: 516 PNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRV 575

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR----DLQPDSVTFLNVLAACS 380
           F  +  KN++TWN +I     +G   + +ELF+ +        + +P+ VTF+ V AACS
Sbjct: 576 FNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACS 635

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG--FGSYG 438
           H+ +  + ++ ++  M  D+G++PT +H   ++ L+G+ G++  A  ++  +   F   G
Sbjct: 636 HSGLISEGLNLFYR-MKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVG 694

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
             W +LL A     ++++  ++A  ++ LE +    YV+L N+Y+S G W+ A  +R  M
Sbjct: 695 -AWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNM 753

Query: 499 RERGLRKEAGCSWIEVEN 516
           R+ G++KE GCSWIE  +
Sbjct: 754 RQMGVKKEPGCSWIEFRD 771



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 178/369 (48%), Gaps = 43/369 (11%)

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
           P  S  SW   +    +S  +R+A++ ++E+  S    D ++F + L A   L  L+ G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 125 AIHSKIVKYSL-ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR- 182
            IH+  VK+      V +AN L++MYGKCG + D   VF  + D+D +SWNS IAA  R 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 183 --------------NGNLELA-------------FGFLH-------------RLPNPDTI 202
                           N+EL+              G +H             R+ +  T 
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTF 232

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
           + N ++   A+ G ++D+  +  S    +  SWN++++ +   +R  EAL  F  M  + 
Sbjct: 233 TNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEG 292

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIA 321
           V +D  T +++L   + L  L  G  IH+ V++   L  +  V SAL+DMY  C QVE  
Sbjct: 293 VELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESG 352

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  + +  WNAMI+GYARNG   K + LF ++  V  L P++ T  +V+ AC H
Sbjct: 353 RRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVH 412

Query: 382 TDIPFDKVS 390
            +   +K S
Sbjct: 413 CEAFSNKES 421



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/444 (24%), Positives = 197/444 (44%), Gaps = 68/444 (15%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGF-LSNVFVSTALMGFYRKINSLADAHK 59
           P+ +    +L+A S L      +Q+H   +K G+  S+V V+  L+  Y K   + D  K
Sbjct: 90  PDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCK 149

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG- 118
           +F  I     VSWNS I+   +  K+ +AL  F  ++   +   +++  S   AC  LG 
Sbjct: 150 VFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGV 209

Query: 119 --SLQLGMAIHSKIVKYSLERG---VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISW 173
              L+LG  +H     YSL  G       N L+ MY K G V+D+  +F   +D+D++SW
Sbjct: 210 MHGLRLGKQLHG----YSLRVGDQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSW 265

Query: 174 NSVIAASARNGNLELAFGF-------------------------LHRLP----------- 197
           N++I++ +++     A  F                         L RL            
Sbjct: 266 NTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLR 325

Query: 198 NPDTISYNEVINGIAQF----GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
           N D I  + V + +         +E    +   +       WN++++GY       +AL 
Sbjct: 326 NNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALI 385

Query: 254 LFGEM-QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
           LF EM +   +  +  T ++++       A +    IH   +K G      V +AL+DMY
Sbjct: 386 LFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMY 445

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL------- 365
           S+ G+++I++++F S+  ++ V+WN MITGY  +G  +  + L  +++ + +        
Sbjct: 446 SRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDD 505

Query: 366 ---------QPDSVTFLNVLAACS 380
                    +P+++T + VL  C+
Sbjct: 506 NDDEKGGPYKPNAITLMTVLPGCA 529



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 14/211 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  +L   + L      +++H Y +++   S++ V +AL+  Y K   L  + ++
Sbjct: 516 PNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRV 575

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-----ERSEIYADAYSFTSALAACG 115
           F E+P  +V++WN LI      GK  +AL LF  +        E   +  +F +  AAC 
Sbjct: 576 FNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACS 635

Query: 116 QLGSLQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM---IDKDII 171
             G +  G+ +  ++   + +E       C++D+ G+ G +E+A  +   M    DK + 
Sbjct: 636 HSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDK-VG 694

Query: 172 SWNSVIAASARNGNLEL----AFGFLHRLPN 198
           +W+S++ A   + N+EL    A   LH  PN
Sbjct: 695 AWSSLLGACRIHQNVELGEVAAKNLLHLEPN 725


>gi|15233050|ref|NP_191676.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|6850884|emb|CAB71047.1| putative protein [Arabidopsis thaliana]
 gi|332646643|gb|AEE80164.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 783

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 155/562 (27%), Positives = 269/562 (47%), Gaps = 79/562 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNEY L  +LR  + L      +Q+H + +K+GF  +V V   L+  Y +   +++A  +
Sbjct: 123 PNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYL 182

Query: 61  FVEIP-QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F  +  + + V+W S+++GY Q+G   KA+  F +L R    ++ Y+F S L AC  + +
Sbjct: 183 FETMEGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSA 242

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            ++G+ +H  IVK   +  + + + LIDMY KC  +E A  +   M   D++SWNS+I  
Sbjct: 243 CRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVG 302

Query: 180 SARNGNLELAFGFLHRLPNPD--------------------------------------- 200
             R G +  A     R+   D                                       
Sbjct: 303 CVRQGLIGEALSMFGRMHERDMKIDDFTIPSILNCFALSRTEMKIASSAHCLIVKTGYAT 362

Query: 201 -TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
             +  N +++  A+ G ++ A+ +   M   +  SW +++TG  +     EAL LF  M+
Sbjct: 363 YKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNGSYDEALKLFCNMR 422

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
              +  D+   +++LS  A L+ L +G  +H   IK G  +S+ V ++L+ MY+KCG +E
Sbjct: 423 VGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLE 482

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A+ +F S+  ++L+TW  +I GYA+NG L      F+ ++TV                 
Sbjct: 483 DANVIFNSMEIRDLITWTCLIVGYAKNGLLEDAQRYFDSMRTV----------------- 525

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
                               YGI P  EH   MI L G+ G+  + ++++ ++       
Sbjct: 526 --------------------YGITPGPEHYACMIDLFGRSGDFVKVEQLLHQMEVEPDAT 565

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           VW+A+L+AS    +++    +A  +++LE ++   YV L N+Y++ G  D A+ +R  M+
Sbjct: 566 VWKAILAASRKHGNIENGERAAKTLMELEPNNAVPYVQLSNMYSAAGRQDEAANVRRLMK 625

Query: 500 ERGLRKEAGCSWIEVENVAAHS 521
            R + KE GCSW+E E    HS
Sbjct: 626 SRNISKEPGCSWVE-EKGKVHS 646



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 184/381 (48%), Gaps = 42/381 (11%)

Query: 39  FVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS 98
           F    ++  Y     L+DA K+F   P  + +SWN+LISGY +SG   +A NLF E++  
Sbjct: 60  FTWNTMIVAYSNSRRLSDAEKLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSD 119

Query: 99  EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
            I  + Y+  S L  C  L  L  G  IH   +K   +  V + N L+ MY +C  + +A
Sbjct: 120 GIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEA 179

Query: 159 IGVFGEMI-DKDIISWNSVIAASARNGNLELA---FGFLHRLPN-------PDTIS---- 203
             +F  M  +K+ ++W S++   ++NG    A   F  L R  N       P  ++    
Sbjct: 180 EYLFETMEGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACAS 239

Query: 204 -------------------------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
                                     + +I+  A+  ++E A  +L  M   +  SWNS+
Sbjct: 240 VSACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSM 299

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA-GLSALTWGMLIHSCVIKQG 297
           + G V +  + EAL +FG M  +D+ +D++T  ++L+  A   + +      H  ++K G
Sbjct: 300 IVGCVRQGLIGEALSMFGRMHERDMKIDDFTIPSILNCFALSRTEMKIASSAHCLIVKTG 359

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
                +V +AL+DMY+K G ++ A  +F  +  K++++W A++TG   NG   + ++LF 
Sbjct: 360 YATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNGSYDEALKLFC 419

Query: 358 QLKTVRDLQPDSVTFLNVLAA 378
            ++ V  + PD +   +VL+A
Sbjct: 420 NMR-VGGITPDKIVTASVLSA 439



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 116/215 (53%), Gaps = 2/215 (0%)

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
           D+  +  N ++   +++G ++ A     ++P  D  ++N +I   +    + DA  +  S
Sbjct: 25  DRTKLHSNLLLGDLSKSGRVDEARQMFDKMPERDEFTWNTMIVAYSNSRRLSDAEKLFRS 84

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
            P  N+ SWN++++GY       EA +LF EMQS  +  +EYT  ++L     L  L  G
Sbjct: 85  NPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRG 144

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYAR 345
             IH   IK G D  + V + LL MY++C ++  A+ +F ++   KN VTW +M+TGY++
Sbjct: 145 EQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLTGYSQ 204

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           NG   K IE F  L+   + Q +  TF +VL AC+
Sbjct: 205 NGFAFKAIECFRDLRREGN-QSNQYTFPSVLTACA 238



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 161/362 (44%), Gaps = 56/362 (15%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H Y  ++   SN+     L+G   K   + +A +MF ++P+    +WN++I  Y  S +
Sbjct: 20  IHSYADRTKLHSNL-----LLGDLSKSGRVDEARQMFDKMPERDEFTWNTMIVAYSNSRR 74

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
              A  LF    RS    +  S+                                   N 
Sbjct: 75  LSDAEKLF----RSNPVKNTISW-----------------------------------NA 95

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISY 204
           LI  Y K GS  +A  +F EM   D I  N     S       L         +  TI  
Sbjct: 96  LISGYCKSGSKVEAFNLFWEM-QSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKT 154

Query: 205 N-----EVINGI----AQFGDIEDAIMILSSMP-SPNSSSWNSILTGYVNRNRVPEALHL 254
                  V+NG+    AQ   I +A  +  +M    N+ +W S+LTGY       +A+  
Sbjct: 155 GFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLTGYSQNGFAFKAIEC 214

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F +++ +    ++YTF ++L+  A +SA   G+ +H C++K G   +I V SAL+DMY+K
Sbjct: 215 FRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAK 274

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           C ++E A ++   +   ++V+WN+MI G  R G + + + +F ++   RD++ D  T  +
Sbjct: 275 CREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEALSMFGRMHE-RDMKIDDFTIPS 333

Query: 375 VL 376
           +L
Sbjct: 334 IL 335


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 159/538 (29%), Positives = 264/538 (49%), Gaps = 48/538 (8%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H   +  G    VF++  L+  Y K   +  A  +F    +   VSWNSLI+GY + G 
Sbjct: 132 IHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGA 191

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAAC--GQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           Y + L L V++  + +  +A++  SAL +C       +  G  +H   VK  L+  +V+ 
Sbjct: 192 YEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVVG 251

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNL--ELAFGFLHRLPN-- 198
             L+DMY K G + DAI +F    +++++ +N++IA   +  ++  E A+  L       
Sbjct: 252 TALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQ 311

Query: 199 -----PDTISYNEVI---NGIAQF--------------------------------GDIE 218
                P   +++ +I   N I  F                                G  E
Sbjct: 312 RQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTE 371

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
           D +   +S P  +  SW +++ GY    +   AL LF E+ +     DE+  +TMLS  A
Sbjct: 372 DQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACA 431

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            ++A   G  +H   +K G+    +V ++ + MY+K G ++ A   F  +   ++V+W+ 
Sbjct: 432 DVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIKNPDVVSWSV 491

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           MI   A++G     I LFE +K+   + P+ +TFL VL ACSH  +  + +  Y+ESM K
Sbjct: 492 MICSNAQHGHAKDAINLFELMKSY-GIHPNQITFLGVLTACSHGGLVEEGL-RYYESMKK 549

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           DY +K  V+HC  ++ L+ + G +  A+  I   GFG + V+WR LLS      D+   +
Sbjct: 550 DYDMKINVKHCTCIVDLLSRAGRLLDAKNFILNSGFGDHPVMWRTLLSGCRIYKDIVTGK 609

Query: 459 ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
             A ++I+L+      YV+L N+YT  G    A+ +R  M++RG+RKE G SWIEV N
Sbjct: 610 HVAEKLIELDPQESSSYVLLYNIYTDAGIDLPATKIRELMKDRGIRKEPGQSWIEVGN 667



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/544 (25%), Positives = 238/544 (43%), Gaps = 88/544 (16%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           L++ SS  G   + +  H +++K+ F   +F+    +  Y K   + +A K+F  + + S
Sbjct: 15  LVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLFDRMSERS 74

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           V+S+N LISGY   G Y KA+ LF E   + +  D +S+   L+ACGQ+    LG  IH 
Sbjct: 75  VISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFALGKVIHG 134

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
             +   L + V + N LIDMY KC  ++ A  +F    + D +SWNS+I   AR G  E 
Sbjct: 135 LAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGAYEE 194

Query: 189 AFGFLHRLPNP---------------------DTISYNEVING----------------- 210
               L ++ +                      + +SY + ++G                 
Sbjct: 195 MLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVVGTAL 254

Query: 211 ---IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP-----EALHLFGEMQSKD 262
               A+ G + DAI +  + P+ N   +N+++ G++    +      EAL LF +MQ + 
Sbjct: 255 LDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQG 314

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +   ++TFS+++     + A  +G  IH+ + K  + +   + S L+++YS  G  E   
Sbjct: 315 IKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQL 374

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
             F S  + ++V+W  MI GYA+NG     + LF +L      +PD      +L+AC+  
Sbjct: 375 KCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYEL-LASGKKPDEFIITTMLSACA-- 431

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
               D  +E        Y +K                             G G+  +V  
Sbjct: 432 ----DVAAERSGEQVHGYAVKT----------------------------GIGTLAIVQN 459

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYV--YVMLCNLYTSHGNWDVASVMRNFMRE 500
           + +S      +LD A+I+  E+     + D V   VM+C+    HG+   A  +   M+ 
Sbjct: 460 SQISMYAKSGNLDSAKITFEEI----KNPDVVSWSVMICS-NAQHGHAKDAINLFELMKS 514

Query: 501 RGLR 504
            G+ 
Sbjct: 515 YGIH 518



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 121/231 (52%), Gaps = 4/231 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +++  + +    Y +Q+H +I K    S+ F+ + L+  Y  + S  D  K 
Sbjct: 317 PSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKC 376

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F   P+  +VSW ++I+GY Q+G++  AL LF EL  S    D +  T+ L+AC  + + 
Sbjct: 377 FNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACADVAAE 436

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H   VK  +    ++ N  I MY K G+++ A   F E+ + D++SW+ +I ++
Sbjct: 437 RSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIKNPDVVSWSVMICSN 496

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           A++G+ + A      +     +P+ I++  V+   +  G +E+ +    SM
Sbjct: 497 AQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACSHGGLVEEGLRYYESM 547



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 149/327 (45%), Gaps = 47/327 (14%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
           D+ ++T  +    + GS   G   H+ ++K +    + + N  +++Y K G + +A  +F
Sbjct: 8   DSVAYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLF 67

Query: 163 GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGD-- 216
             M ++ +IS+N +I+     G    A G            D  SY  V++   Q  D  
Sbjct: 68  DRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFA 127

Query: 217 ---------------------------------IEDAIMILSSMPSPNSSSWNSILTGYV 243
                                            I+ A ++  S    ++ SWNS++TGY 
Sbjct: 128 LGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYA 187

Query: 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG--IAGLSALTWGMLIHSCVIKQGLDAS 301
                 E L L  +M    + ++ +T  + L    +   + +++G  +H   +KQGLD  
Sbjct: 188 RVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLD 247

Query: 302 IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK-----VIELF 356
           IVV +ALLDMY+K G +  A  +FR+   +N+V +NAMI G+ +  D+ K      ++LF
Sbjct: 248 IVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLF 307

Query: 357 EQLKTVRDLQPDSVTFLNVLAACSHTD 383
            Q++  + ++P   TF +++  C+H +
Sbjct: 308 SQMQR-QGIKPSDFTFSSIIKICNHIE 333



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 1/159 (0%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+++  +L A +D+  +   +Q+H Y +K+G  +   V  + +  Y K  +L  A   
Sbjct: 418 PDEFIITTMLSACADVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAKIT 477

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EI  P VVSW+ +I    Q G  + A+NLF  ++   I+ +  +F   L AC   G +
Sbjct: 478 FEEIKNPDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACSHGGLV 537

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDA 158
           + G+  +  + K Y ++  V    C++D+  + G + DA
Sbjct: 538 EEGLRYYESMKKDYDMKINVKHCTCIVDLLSRAGRLLDA 576



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 66/127 (51%), Gaps = 2/127 (1%)

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
           P+D   ++ ++   +   +   G L H+ +IK   +  + + +  L++YSK G++  A  
Sbjct: 6   PLDSVAYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQK 65

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-T 382
           +F  +  ++++++N +I+GY   G   K I LF + + +  L+ D  ++  VL+AC    
Sbjct: 66  LFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEAR-MACLKLDKFSYAGVLSACGQIK 124

Query: 383 DIPFDKV 389
           D    KV
Sbjct: 125 DFALGKV 131


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 161/605 (26%), Positives = 287/605 (47%), Gaps = 94/605 (15%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A  ++    +   +H  +  +G  SNVF+  +++  Y +  +L DAH+M
Sbjct: 125 PDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQM 184

Query: 61  FVEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVELERS---EIYADAYSFTSALAAC 114
           F E+ +     +VSWNS+++ YVQ G+ R AL +   +      ++  DA +  + L AC
Sbjct: 185 FDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPAC 244

Query: 115 GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN 174
             + +LQ G  +H   V+  L   V + N L+ MY KC  + +A  VF  +  KD++SWN
Sbjct: 245 ASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWN 304

Query: 175 S-----------------------------------VIAASARNGNLELAFGFLHRLP-- 197
           +                                   VIA  A+ G+   A     ++   
Sbjct: 305 AMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLY 364

Query: 198 --NPDTISYNEVINGIAQFG----------------------DIEDAIMILSSM------ 227
              P+ ++   +++G A  G                      D ED +++L+ +      
Sbjct: 365 GLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAK 424

Query: 228 ----------------PSPNSSSWNSILTGYVNRNRVPEALHLFGEM--QSKDVPMDEYT 269
                              N  +W  ++ GY       +AL LF ++  Q   +  + +T
Sbjct: 425 CKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFT 484

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV-VASALLDMYSKCGQVEIADSMFRSL 328
            S  L   A L  L  G  +H+  ++   ++ ++ V + L+DMYSK G ++ A ++F ++
Sbjct: 485 LSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNM 544

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDK 388
             +N+V+W +++TGY  +G   + + LF+Q++ +     D +TFL VL ACSH+ +  D+
Sbjct: 545 KLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKL-GFAVDGITFLVVLYACSHSGM-VDQ 602

Query: 389 VSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSAS 448
              YF  M K +GI P  EH   M+ L+G+ G +  A  +I+ +      VVW ALLSAS
Sbjct: 603 GMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSAS 662

Query: 449 GACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAG 508
              +++++   +A+++ +L  ++D  Y +L NLY +   W   + +R+ M+  G+RK  G
Sbjct: 663 RIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPG 722

Query: 509 CSWIE 513
           CSWI+
Sbjct: 723 CSWIQ 727



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 187/408 (45%), Gaps = 91/408 (22%)

Query: 64  IPQPSVVSW-NSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQL 122
           IP  S V W N+LI   V+ G     L  + +++R     D Y+F   L ACG++ SL+ 
Sbjct: 86  IPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRH 145

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK---DIISWNSVIAA 179
           G ++H+ +    L   V I N ++ MYG+CG+++DA  +F E++++   DI+SWNS++AA
Sbjct: 146 GASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAA 205

Query: 180 SARNGNLELAFGFLHRLPN-------PDTISY---------------------------- 204
             + G    A     R+ N       PD I+                             
Sbjct: 206 YVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGL 265

Query: 205 -------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
                  N +++  A+   + +A  +   +   +  SWN+++TGY        AL LF  
Sbjct: 266 VDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKM 325

Query: 258 MQSKDVPMDEYTFS-----------------------------------TMLSGIAGLSA 282
           MQ +D+ +D  T+S                                   ++LSG A + A
Sbjct: 326 MQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGA 385

Query: 283 LTWGMLIHSCVIKQGLDAS-------IVVASALLDMYSKCGQVEIADSMFRSL--CRKNL 333
           L +G   H+ VIK  L+ +       ++V + L+DMY+KC    +A S+F S+    KN+
Sbjct: 386 LLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNV 445

Query: 334 VTWNAMITGYARNGDLTKVIELFEQL-KTVRDLQPDSVTFLNVLAACS 380
           VTW  MI GYA++G+    ++LF Q+ K    L+P++ T    L AC+
Sbjct: 446 VTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACA 493


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/481 (30%), Positives = 246/481 (51%), Gaps = 33/481 (6%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           ++  S +++  +     + +A K+F E+ +  +V+W++LI+ + Q+  Y +A+  FV + 
Sbjct: 309 SIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMH 368

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           +  +  D     SAL+AC  L  + +G  IHS  +K   E  + + N LI MY KCG + 
Sbjct: 369 KIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIM 428

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
            A  +F E    D+ISWNS+                               I+G  +   
Sbjct: 429 VARKLFDEAYLLDLISWNSM-------------------------------ISGYLKCNL 457

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           +++A  I  SMP  +  SW+S+++GY   +   E L LF EMQ      DE T  +++S 
Sbjct: 458 VDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA 517

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            A L+AL  G  +H+ + + GL  ++++ + L+DMY KCG VE A  +F  +  K + TW
Sbjct: 518 CARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTW 577

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           NA+I G A NG +   +++F  +K    + P+ +TF+ VL AC H  +  D+   +F SM
Sbjct: 578 NALILGLAMNGLVESSLDMFSNMKKCH-VTPNEITFMGVLGACRHMGL-VDEGQHHFYSM 635

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
             D+ I+P V+H   M+ L+G+ G++  A+ ++  +        W ALL A     D ++
Sbjct: 636 IHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEM 695

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            R    ++I+L+ D D  +V+L N+Y S G WD    +R  M +  + K  GCS IE   
Sbjct: 696 GRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANG 755

Query: 517 V 517
           V
Sbjct: 756 V 756



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 172/365 (47%), Gaps = 13/365 (3%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLIS--GYVQSGKYRKALNLFVELERSEIY 101
           LM   RK  S+     + +  PQ +     +  S   Y+Q+     A  L+  +  + + 
Sbjct: 151 LMAPSRKSRSVNKGFLLLMRYPQANTWKMPAKASRRAYIQTNSPHFAFTLYKSMLSNYLG 210

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
           AD Y++   + AC    S      +H+ ++K   +  V + N LI+ +  C ++ DA  V
Sbjct: 211 ADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRV 270

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F E    D +SWNS++A     GN+E A    H++P    I+ N +I      G + +A 
Sbjct: 271 FNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEAC 330

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   M   +  +W++++  +       EA+  F  M    V +DE    + LS  A L 
Sbjct: 331 KLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLL 390

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            +  G LIHS  +K G ++ I + +AL+ MYSKCG + +A  +F      +L++WN+MI+
Sbjct: 391 VVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMIS 450

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQP--DSVTFLNVLAACSHTDIPFDKVSEYFESMTKD 399
           GY +         L +  K + D  P  D V++ ++++  +  D+ FD+    F+ M   
Sbjct: 451 GYLK-------CNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDL-FDETLALFQEMQMS 502

Query: 400 YGIKP 404
            G KP
Sbjct: 503 -GFKP 506



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 128/273 (46%), Gaps = 27/273 (9%)

Query: 29  ILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKA 88
           +    +L ++    +++  Y K N + +A  +F  +P+  VVSW+S+ISGY Q+  + + 
Sbjct: 433 LFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDET 492

Query: 89  LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
           L LF E++ S    D  +  S ++AC +L +L+ G  +H+ I +  L   V++   LIDM
Sbjct: 493 LALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDM 552

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISY 204
           Y KCG VE A+ VF  MI+K I +WN++I   A NG +E +      +      P+ I++
Sbjct: 553 YMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITF 612

Query: 205 NEVINGIAQFGDIEDAI-----MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
             V+      G +++       MI      PN   +  ++       ++ EA  L   M 
Sbjct: 613 MGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRM- 671

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
               PM                  TWG L+ +C
Sbjct: 672 ----PMTP-------------DVATWGALLGAC 687



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 114/232 (49%), Gaps = 5/232 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  L  ++ A + L      + +H YI ++G   NV + T L+  Y K   +  A ++
Sbjct: 506 PDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEV 565

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  + +WN+LI G   +G    +L++F  +++  +  +  +F   L AC  +G +
Sbjct: 566 FYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLV 625

Query: 121 QLGM-AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G    +S I  + ++  V    C++D+ G+ G +++A  +   M +  D+ +W +++ 
Sbjct: 626 DEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLG 685

Query: 179 ASARNGNLELAFGFLHRLP--NPDTISYNEVINGI-AQFGDIEDAIMILSSM 227
           A  ++G+ E+      +L    PD   ++ +++ I A  G  +D + I   M
Sbjct: 686 ACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMM 737


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 152/501 (30%), Positives = 262/501 (52%), Gaps = 26/501 (5%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKIN----SLADAHKMFVEIPQPSVVSWNSLISGY 79
           Q+H   +KSG + +   +  ++ F    +     L  AHK+F ++PQ +  SWN++I G+
Sbjct: 41  QIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGF 100

Query: 80  VQSGKYRK--ALNLFVELERSE-IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE 136
            +S + +   A+ LF E+   E +  + ++F S L AC + G +Q G  IH   +KY   
Sbjct: 101 SESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFG 160

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196
               + + L+ MY  CG ++DA  +F     K+II  + V+    R  + E+        
Sbjct: 161 GDEFVMSNLVRMYVMCGFMKDARVLFY----KNIIEKDMVVMTDRRKRDGEIVL------ 210

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
                  +N +I+G  + GD + A M+   M   +  SWN++++GY       +A+ +F 
Sbjct: 211 -------WNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFR 263

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           EM+  D+  +  T  ++L  I+ L +L  G  +H      G+    V+ SAL+DMYSKCG
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCG 323

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            +E A  +F  L R+N++TW+AMI G+A +G     I+ F +++    ++P  V ++N+L
Sbjct: 324 IIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQA-GVRPSDVAYINLL 382

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
            ACSH  +  ++   YF  M    G++P +EH   M+ L+G+ G +  A+  I  +    
Sbjct: 383 TACSHGGL-VEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKP 441

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
             V+W+ALL A     ++++ +  A  ++ +       YV L N+Y S GNW   S MR 
Sbjct: 442 DDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRL 501

Query: 497 FMRERGLRKEAGCSWIEVENV 517
            M+E+ +RK+ GCS I+++ V
Sbjct: 502 RMKEKDIRKDPGCSLIDIDGV 522



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 157/378 (41%), Gaps = 98/378 (25%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGF------LSNV--------FVSTALMG 46
           PN +    +L+A +  G     +Q+H   LK GF      +SN+        F+  A + 
Sbjct: 126 PNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVL 185

Query: 47  FYRKI---------------------NSLAD----------AHKMFVEIPQPSVVSWNSL 75
           FY+ I                     N + D          A  +F ++ Q SVVSWN++
Sbjct: 186 FYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTM 245

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135
           ISGY  +G ++ A+ +F E+++ +I  +  +  S L A  +LGSL+LG  +H       +
Sbjct: 246 ISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGI 305

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
               V+ + LIDMY KCG +E AI VF  +  +++I+W++                    
Sbjct: 306 RIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSA-------------------- 345

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PNSSSWNSILTGYVNRNRVPEA 251
                      +ING A  G   DAI     M      P+  ++ ++LT   +   V E 
Sbjct: 346 -----------MINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEG 394

Query: 252 LHLFGEMQSKD---VPMDEYTFSTMLSGIAGL---------------SALTWGMLIHSCV 293
              F +M S D     ++ Y     L G +GL                 + W  L+ +C 
Sbjct: 395 RRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACR 454

Query: 294 IKQGLDASIVVASALLDM 311
           ++  ++    VA+ L+DM
Sbjct: 455 MQGNVEMGKRVANILMDM 472


>gi|449464272|ref|XP_004149853.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
 gi|449520209|ref|XP_004167126.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
          Length = 840

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 164/525 (31%), Positives = 273/525 (52%), Gaps = 12/525 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P +  L   L AS++L      +Q H   + SG      + ++L+ FY K+  + DA  +
Sbjct: 280 PTQVTLSSFLSASANLSVIDEGKQGHALAVLSGLELTNILGSSLINFYSKVGLVEDAELV 339

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+ +   V+WN L+SGYV +G   +AL+L   ++   +  D+ +  S +AA     +L
Sbjct: 340 FSEMLEKDTVTWNLLVSGYVHNGLVDRALDLCHVMQSENLRFDSVTLASIMAAAADSRNL 399

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG   HS  V+ +LE  V +A+ +IDMY KC  +E A  VF     +D+I WN+++AA 
Sbjct: 400 KLGKEGHSFCVRNNLESDVAVASSIIDMYAKCEKLECARRVFDATAKRDLIMWNTLLAAY 459

Query: 181 ARNGN----LELAFGF-LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PN 231
           A  G+    L+L +   L  LP P+ IS+N VI G+   G ++ A      M S    PN
Sbjct: 460 AEQGHSGETLKLFYQMQLEGLP-PNVISWNSVILGLLNKGKVDQAKDTFMEMQSLGICPN 518

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             +W +++ G        EA   F  M+   +  +  + S++LS  + +++L  G  IH 
Sbjct: 519 LITWTTLICGLAQNGLGDEAFLTFQSMEEAGIKPNSLSISSLLSACSTMASLPHGRAIHC 578

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
            + +  L  S  V  +L++MY+KCG +  A  +F  + +K L  +NAMI+GYA +G   +
Sbjct: 579 YITRHELSVSTPVLCSLVNMYAKCGSINQAKRVFDMILKKELPVYNAMISGYALHGQAVE 638

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411
            + LF +LK    ++PD +TF ++L+AC H  +  + + E F  M  ++ I    EH   
Sbjct: 639 ALSLFRRLKE-ECIKPDEITFTSILSACGHAGLVREGL-ELFIDMVSNHKIVAQAEHYGC 696

Query: 412 MIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471
           ++ ++ +   +  A R+I  + F     ++ +LL+A     D ++       ++KLE D+
Sbjct: 697 LVSILSRSHNLDEALRIILGMPFEPDAFIFGSLLAACREHPDFELKERLFERLLKLEPDN 756

Query: 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
              YV L N Y + G WD AS +R  M+ER L K  G S I++ N
Sbjct: 757 SGNYVALSNAYAATGMWDEASKVRGLMKERSLSKIPGHSLIQIGN 801



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 220/439 (50%), Gaps = 44/439 (10%)

Query: 23  QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           QQ+H  ILK+G     N ++ T L+ FY K +    A+++F ++   +  SW +++    
Sbjct: 98  QQIHGRILKNGESIAKNEYIETKLVIFYSKCDESEIANRLFGKLQVQNEFSWAAIMGLKS 157

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + G  ++AL  F E+    +  D +    A  A G L  +  G ++H+ +VK  L   + 
Sbjct: 158 RMGFNQEALMGFREMHEYGLLLDNFVIPIAFKASGALRWIGFGKSVHAYVVKMGLGGCIY 217

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-NLELAFGFLHR---- 195
           +A  L+DMYGKCG  E+A  VF ++++K+I++WNS+I    +NG N E    F       
Sbjct: 218 VATSLLDMYGKCGLCEEAKKVFDKILEKNIVAWNSMIVNFTQNGLNAEAVETFYEMRVEG 277

Query: 196 -LPNPDTISY---------------------------------NEVINGIAQFGDIEDAI 221
             P   T+S                                  + +IN  ++ G +EDA 
Sbjct: 278 VAPTQVTLSSFLSASANLSVIDEGKQGHALAVLSGLELTNILGSSLINFYSKVGLVEDAE 337

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           ++ S M   ++ +WN +++GYV+   V  AL L   MQS+++  D  T +++++  A   
Sbjct: 338 LVFSEMLEKDTVTWNLLVSGYVHNGLVDRALDLCHVMQSENLRFDSVTLASIMAAAADSR 397

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G   HS  ++  L++ + VAS+++DMY+KC ++E A  +F +  +++L+ WN ++ 
Sbjct: 398 NLKLGKEGHSFCVRNNLESDVAVASSIIDMYAKCEKLECARRVFDATAKRDLIMWNTLLA 457

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            YA  G   + ++LF Q++ +  L P+ +++ +V+    +     D+  + F  M +  G
Sbjct: 458 AYAEQGHSGETLKLFYQMQ-LEGLPPNVISWNSVILGLLNKG-KVDQAKDTFMEM-QSLG 514

Query: 402 IKPTVEHCCSMIRLMGQKG 420
           I P +    ++I  + Q G
Sbjct: 515 ICPNLITWTTLICGLAQNG 533



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 108/445 (24%), Positives = 221/445 (49%), Gaps = 31/445 (6%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + +V+    +AS  L W  + + +H Y++K G    ++V+T+L+  Y K     +A K+F
Sbjct: 180 DNFVIPIAFKASGALRWIGFGKSVHAYVVKMGLGGCIYVATSLLDMYGKCGLCEEAKKVF 239

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            +I + ++V+WNS+I  + Q+G   +A+  F E+    +     + +S L+A   L  + 
Sbjct: 240 DKILEKNIVAWNSMIVNFTQNGLNAEAVETFYEMRVEGVAPTQVTLSSFLSASANLSVID 299

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G   H+  V   LE   ++ + LI+ Y K G VEDA  VF EM++KD ++WN +++   
Sbjct: 300 EGKQGHALAVLSGLELTNILGSSLINFYSKVGLVEDAELVFSEMLEKDTVTWNLLVSGYV 359

Query: 182 RNGNLELAFGFLHRLPNP----DTISYNEVINGIA-----QFGDIEDAIMILSSMPSPNS 232
            NG ++ A    H + +     D+++   ++   A     + G    +  + +++ S + 
Sbjct: 360 HNGLVDRALDLCHVMQSENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLES-DV 418

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA--GLSALTWGMLIH 290
           +  +SI+  Y    ++  A  +F     +D+ M    ++T+L+  A  G S  T  +   
Sbjct: 419 AVASSIIDMYAKCEKLECARRVFDATAKRDLIM----WNTLLAAYAEQGHSGETLKLFYQ 474

Query: 291 SCVIKQGLDASIVV-ASALLDMYSKCGQVEIADSMFRSL-----CRKNLVTWNAMITGYA 344
             +  +GL  +++   S +L + +K G+V+ A   F  +     C  NL+TW  +I G A
Sbjct: 475 MQL--EGLPPNVISWNSVILGLLNK-GKVDQAKDTFMEMQSLGIC-PNLITWTTLICGLA 530

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIPFDKVSEYFESMTKDYGIK 403
           +NG   +    F+ ++    ++P+S++  ++L+ACS    +P  +    + +  +     
Sbjct: 531 QNGLGDEAFLTFQSMEEA-GIKPNSLSISSLLSACSTMASLPHGRAIHCYITRHELSVST 589

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRM 428
           P +   CS++ +  + G + +A+R+
Sbjct: 590 PVL---CSLVNMYAKCGSINQAKRV 611



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 164/356 (46%), Gaps = 42/356 (11%)

Query: 66  QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA 125
           Q S  S+ + IS   + G   +AL+L  +LE  +I      +   L  C    +L LG  
Sbjct: 40  QISYKSYLNHISSLCKQGHLLEALDLVTDLELEDITIGPDVYGELLQGCVYERALSLGQQ 99

Query: 126 IHSKIVK--YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
           IH +I+K   S+ +   I   L+  Y KC   E A  +FG++  ++  SW +++   +R 
Sbjct: 100 IHGRILKNGESIAKNEYIETKLVIFYSKCDESEIANRLFGKLQVQNEFSWAAIMGLKSRM 159

Query: 184 G-NLELAFGF--LHR---------LPNPDTIS---------------------------Y 204
           G N E   GF  +H          +P     S                            
Sbjct: 160 GFNQEALMGFREMHEYGLLLDNFVIPIAFKASGALRWIGFGKSVHAYVVKMGLGGCIYVA 219

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
             +++   + G  E+A  +   +   N  +WNS++  +       EA+  F EM+ + V 
Sbjct: 220 TSLLDMYGKCGLCEEAKKVFDKILEKNIVAWNSMIVNFTQNGLNAEAVETFYEMRVEGVA 279

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
             + T S+ LS  A LS +  G   H+  +  GL+ + ++ S+L++ YSK G VE A+ +
Sbjct: 280 PTQVTLSSFLSASANLSVIDEGKQGHALAVLSGLELTNILGSSLINFYSKVGLVEDAELV 339

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           F  +  K+ VTWN +++GY  NG + + ++L   +++  +L+ DSVT  +++AA +
Sbjct: 340 FSEMLEKDTVTWNLLVSGYVHNGLVDRALDLCHVMQS-ENLRFDSVTLASIMAAAA 394


>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
           [Vitis vinifera]
 gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 150/521 (28%), Positives = 269/521 (51%), Gaps = 37/521 (7%)

Query: 30  LKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP-QPSVVSWNSLISGYVQSGKYRKA 88
           L + F++       L   Y  +  +  A +MF   P +      NS+I  YV   +Y ++
Sbjct: 12  LFTKFIATCSSIALLAPLYDPLAGIVHARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSES 71

Query: 89  LNLFVELERSEIYA-DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLID 147
             L+ +L R+  +  D+++F+    +C    ++  G  IHS +V       +  A  L+D
Sbjct: 72  FALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVD 131

Query: 148 MYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEV 207
           MY K G ++ A  +F EMID+  +SW ++I    R+G+++ A     ++   D+ ++N +
Sbjct: 132 MYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTM 191

Query: 208 INGIAQFGD-------------------------------IEDAIMILSSMPSPNSSSWN 236
           I+   + GD                               ++ A  +  +MP  N  SWN
Sbjct: 192 IDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWN 251

Query: 237 SILTGYVNRNRVPEALHLFGEMQSK-DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
           ++++GY    +  EAL LF EMQS   +  DE T  ++L  IA L AL  G  +H  V +
Sbjct: 252 AMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRR 311

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
           + LD +  V +AL+DMY+KCG++  +  +F ++  K   +WNA+I  +A NG   + + L
Sbjct: 312 KKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGL 371

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415
           F ++   +   P+ +T + VL+AC+H+ +  ++   +F++M +++G+ P +EH   M+ L
Sbjct: 372 FMEMNH-KGFMPNEITMIGVLSACNHSGL-VEEGKRWFKAM-EEFGLTPKIEHYGCMVDL 428

Query: 416 MGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475
           +G+ G +  A++++  + + + G++  + L A G   D+  A     E IK+E  +D  Y
Sbjct: 429 LGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNY 488

Query: 476 VMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +ML NLY +   W  A  ++  MR  G++KEAGCS IEV++
Sbjct: 489 IMLRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDS 529



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 150/346 (43%), Gaps = 48/346 (13%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q++H +++  GF  +++ +TAL+  Y K   +  A K+F E+   S VSW +LI GYV+S
Sbjct: 108 QEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRS 167

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G    A  LF ++    I  D+ +F + + A  +LG     M    K+     ER VV  
Sbjct: 168 GDMDNAGKLFDQM----IEKDSAAFNTMIDAYVKLGD----MCSARKLFDEMPERSVVSW 219

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
             +I  Y   G+++ A  +F  M +K++ SWN++I+   +N     A    H + +    
Sbjct: 220 TIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSL 279

Query: 199 -PDTISYNEVINGIAQF-----------------------------------GDIEDAIM 222
            PD ++   V+  IA                                     G+I  +  
Sbjct: 280 EPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRG 339

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           +  +MP   ++SWN+++  +    R  EAL LF EM  K    +E T   +LS       
Sbjct: 340 VFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGL 399

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           +  G      + + GL   I     ++D+  + G ++ A+ +  S+
Sbjct: 400 VEEGKRWFKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESM 445



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 77/158 (48%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +  +L A +DLG       +H ++ +        V TAL+  Y K   +  +  +
Sbjct: 281 PDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGV 340

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+    SWN+LI+ +  +G+ ++AL LF+E+       +  +    L+AC   G +
Sbjct: 341 FDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLV 400

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
           + G      + ++ L   +    C++D+ G+ G +++A
Sbjct: 401 EEGKRWFKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEA 438


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 150/514 (29%), Positives = 263/514 (51%), Gaps = 38/514 (7%)

Query: 7   FHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINS--LADAHKMFVEI 64
            HLL+  S++      +Q+H  +LK+G + +   ++ L+ F    NS  LA A  +F  I
Sbjct: 22  LHLLQRCSNM---EELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRI 78

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
            +P+   WN++I GY  S +  +AL L+  +    +  +AY+F   L AC  + +L+   
Sbjct: 79  FRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQ 138

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
            IH+ I+K      +   N L+++Y K G ++ A  +F ++  +D               
Sbjct: 139 QIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD--------------- 183

Query: 185 NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
                           T+S+N +I+G  + G+IE A  I + MP  N  SW S+++G V 
Sbjct: 184 ----------------TVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVG 227

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV 304
             +  EAL+LF  MQ+  + +D     + L   A L  L  G  IH+ + K  ++   ++
Sbjct: 228 AGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL 287

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
              L+DMY+KCG +E A  +FR +  K +  W AMI+GYA +G   + +E F +++T   
Sbjct: 288 GCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTA-G 346

Query: 365 LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424
           ++P+ +TF  +L ACSH  +   +    FESM + +G KP++EH   M+ L+G+ G +  
Sbjct: 347 VEPNQMTFTGILTACSHAGL-VHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKE 405

Query: 425 AQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484
           A+ +I  +       +W ALL+A     +L++ +     +I+++      Y+ L +++ +
Sbjct: 406 AEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAA 465

Query: 485 HGNWDVASVMRNFMRERGLRKEAGCSWIEVENVA 518
            G W+ A+ +R  M+E+G+ K  GCS I V   A
Sbjct: 466 AGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTA 499



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 159/350 (45%), Gaps = 58/350 (16%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKI---------- 51
           N Y    LL+A S +      QQ+H +I+K GF S ++ + +L+  Y K           
Sbjct: 117 NAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLF 176

Query: 52  -----------NSLAD----------AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALN 90
                      NS+ D          A+++F  +P+ +++SW S+ISG V +GK ++ALN
Sbjct: 177 DQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALN 236

Query: 91  LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
           LF  ++ + I  D  +  S L AC  LG L  G  IH+ I K+ +E   ++   LIDMY 
Sbjct: 237 LFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYA 296

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNE 206
           KCG +E+AI VF +M +K +  W ++I+  A +G    A  +  ++      P+ +++  
Sbjct: 297 KCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTG 356

Query: 207 VINGIAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           ++   +  G + +A ++  SM       P+   +  ++        + EA  L   M  K
Sbjct: 357 ILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVK 416

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
                              +A  WG L+++C I   L+    +   L+ +
Sbjct: 417 P------------------NAAIWGALLNACHIHGNLELGKQIGKILIQV 448


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 142/516 (27%), Positives = 262/516 (50%), Gaps = 43/516 (8%)

Query: 40  VSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE 99
           +   L+  Y    S  D  K+F E+   ++VSW  +IS Y ++G+  KA+ LF +++ S 
Sbjct: 124 IENCLLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASG 183

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159
           I  ++  + S L +C     L+LG  +HS +++  L   + +   + +MY +CG +E A 
Sbjct: 184 IRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAK 243

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIA------- 212
            VF  M  ++ ++W  ++    +   LE+A     R+   + +  +E +  I        
Sbjct: 244 LVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAM-EGVELDEFVFSIVLKVCCXL 302

Query: 213 ---------------------------------QFGDIEDAIMILSSMPSPNSSSWNSIL 239
                                            + GDIE A      +  PN  SW++++
Sbjct: 303 EDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALI 362

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           +G+    R+ + + +F  ++S+ V ++ + ++++    A  + L  G   H   IK+GL 
Sbjct: 363 SGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLV 422

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           + +   SA++ MYSKCG+++ A   F S+   + V W A+I+GYA +G+  + +  F ++
Sbjct: 423 SYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRM 482

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           ++   ++P++VTF+ VL ACSH+ +   +  +Y  SM++DYG+KPT++H   MI    + 
Sbjct: 483 QSY-GVRPNAVTFIAVLTACSHSGL-VAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRA 540

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G +  A  +I  + F    + W++LL    A  DL + +I+A  + +L+      Y++L 
Sbjct: 541 GLLXEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLF 600

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           NLY++ G W+ A  +R  M ER L+KE  CSWI V+
Sbjct: 601 NLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVK 636



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 161/339 (47%), Gaps = 40/339 (11%)

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + GK ++A +   E++ +++    +S+     ACG+L SL  G  IH ++ +        
Sbjct: 64  KQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGS 123

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP--- 197
           I NCL+ MY  CGS  D   VF EM+ K+++SW  VI+A A+NG LE A      +    
Sbjct: 124 IENCLLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASG 183

Query: 198 -NPDTISY-----------------------------------NEVINGIAQFGDIEDAI 221
             P++  Y                                     + N   + G +E A 
Sbjct: 184 IRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAK 243

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           ++   M + N+ +W  ++ GY    ++  AL LF  M  + V +DE+ FS +L     L 
Sbjct: 244 LVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLE 303

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
               G  IHS ++K G ++ + V + L+D Y KCG +E A   F  +   N V+W+A+I+
Sbjct: 304 DWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALIS 363

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           G++++G L   I++F  L++   +  +S  + +V  AC+
Sbjct: 364 GFSQSGRLEDCIKIFTSLRS-EGVVLNSFIYTSVFQACA 401



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 162/343 (47%), Gaps = 17/343 (4%)

Query: 2   NEYVLFHLLRASSDL-GWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           +E+V   +L+    L  WD   +Q+H +I+K G  S V V T L+ FY K   +  A++ 
Sbjct: 288 DEFVFSIVLKVCCXLEDWDM-GKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRS 346

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I +P+ VSW++LISG+ QSG+    + +F  L    +  +++ +TS   AC    +L
Sbjct: 347 FGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANL 406

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +G   H   +K  L   +   + ++ MY KCG ++ A   F  + + D ++W ++I+  
Sbjct: 407 NMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGY 466

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A +GN   A GF  R+ +    P+ +++  V+   +  G + +A   L SM       P 
Sbjct: 467 AYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPT 526

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              ++ ++  Y     + EAL L   M  +    D  ++ ++L G      L  G +   
Sbjct: 527 IDHYDCMIDTYSRAGLLXEALELINRMPFEP---DAMSWKSLLGGCWAHCDLKLGKIAAE 583

Query: 292 CVIKQGLDASIVVASALL-DMYSKCGQVEIADSMFRSLCRKNL 333
            + +  LD        LL ++YS  G+ E A  + + +  + L
Sbjct: 584 NLFR--LDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAEREL 624



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 181/431 (41%), Gaps = 76/431 (17%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN  V   LL++     +    +Q+H +++++   +N+ V TA+   Y +   L  A  +
Sbjct: 186 PNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLV 245

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   + V+W  L+ GY Q+ K   AL LF  +    +  D + F+  L  C  L   
Sbjct: 246 FDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDW 305

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +G  IHS IVK   E  V +   L+D Y KCG +E A   FG + + + +SW+++I+  
Sbjct: 306 DMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGF 365

Query: 181 ARNGNLELAFGFLHRLPNP----DTISYNEVINGIA------------------------ 212
           +++G LE        L +     ++  Y  V    A                        
Sbjct: 366 SQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYL 425

Query: 213 -----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                      + G ++ A     S+  P++ +W +I++GY       EAL  F  MQS 
Sbjct: 426 YGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSY 485

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  +  TF      IA L+A +     HS ++ +                      +  
Sbjct: 486 GVRPNAVTF------IAVLTACS-----HSGLVAEA--------------------KQYL 514

Query: 322 DSMFRSLCRKNLVT-WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC- 379
            SM R    K  +  ++ MI  Y+R G L + +EL  ++      +PD++++ ++L  C 
Sbjct: 515 GSMSRDYGVKPTIDHYDCMIDTYSRAGLLXEALELINRMP----FEPDAMSWKSLLGGCW 570

Query: 380 SHTDIPFDKVS 390
           +H D+   K++
Sbjct: 571 AHCDLKLGKIA 581


>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 542

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 150/506 (29%), Positives = 263/506 (51%), Gaps = 42/506 (8%)

Query: 19  DTYC------QQLHCYILKSGFLSNVFVSTALMGFYRKINSLAD-AHKMFVEIPQPSVVS 71
           DT C      +Q+H  ++K+G +S+   ++ ++ F     S  + A+ +F  I   +   
Sbjct: 32  DTRCSTMRELKQIHANLIKTGLISDTVAASRVLAFCCASPSDRNYAYLVFTRINHKNPFV 91

Query: 72  WNSLISGYVQSGKYRKALNLFVEL--ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
           WN++I G+ +S     A+++F+++      +     ++ S   A   LG  + G  +H +
Sbjct: 92  WNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQLHGR 151

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
           ++K  LE    I N ++ MY  CG + +A  +F  M+  D+++WNS+             
Sbjct: 152 VIKEGLEDDSFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSI------------- 198

Query: 190 FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
                             I G+A+ G I+ A  +   MP  N  SWNS+++G+V   R  
Sbjct: 199 ------------------IMGLAKCGLIDQAQKLFDEMPQRNGVSWNSMISGFVRNGRFK 240

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
           +AL +F EMQ +DV  D +T  ++L+  A L A   G  IH  +++   + + +V +AL+
Sbjct: 241 DALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVITALI 300

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
           DMY KCG  E    +F     K L  WN+MI G A NG   + ++LF +L+    L+PDS
Sbjct: 301 DMYCKCGCFEEGLKVFECAPTKQLSCWNSMILGLANNGCEERAMDLFLELERT-GLEPDS 359

Query: 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429
           V+F+ VL AC+H+     K  E+F  M + Y I+P+++H   M+ ++G  G +  A+ +I
Sbjct: 360 VSFIGVLTACAHSG-EVHKAGEFFRLMREKYMIEPSIKHYTCMVNVLGGAGLLDEAEALI 418

Query: 430 RELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD 489
           +++      ++W +LL+A     ++++A+ +A  +  L+ D    YV++ N Y S+G ++
Sbjct: 419 KKMPVEGDTIIWSSLLAACRKNGNVEMAKRAANCLKNLDPDETCGYVLMSNAYASYGLFE 478

Query: 490 VASVMRNFMRERGLRKEAGCSWIEVE 515
            A   R  M+ER + KE GCS IEV+
Sbjct: 479 EAVEQRLLMKERQMEKEVGCSSIEVD 504



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 118/255 (46%), Gaps = 35/255 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P       + +A + LG     +QLH  ++K G   + F+   ++  Y     L +A ++
Sbjct: 124 PQRLTYPSVFKAYASLGLARDGRQLHGRVIKEGLEDDSFIRNTMLHMYVTCGCLVEAWRL 183

Query: 61  FV-------------------------------EIPQPSVVSWNSLISGYVQSGKYRKAL 89
           FV                               E+PQ + VSWNS+ISG+V++G+++ AL
Sbjct: 184 FVGMMGFDVVAWNSIIMGLAKCGLIDQAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDAL 243

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
            +F E++  ++  D ++  S L AC  LG+ + G  IH  IV+   E   ++   LIDMY
Sbjct: 244 EMFREMQERDVKPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVITALIDMY 303

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYN 205
            KCG  E+ + VF     K +  WNS+I   A NG  E A      L      PD++S+ 
Sbjct: 304 CKCGCFEEGLKVFECAPTKQLSCWNSMILGLANNGCEERAMDLFLELERTGLEPDSVSFI 363

Query: 206 EVINGIAQFGDIEDA 220
            V+   A  G++  A
Sbjct: 364 GVLTACAHSGEVHKA 378



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + +  LL A + LG     + +H YI+++ F  N  V TAL+  Y K     +  K+
Sbjct: 256 PDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKV 315

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F   P   +  WNS+I G   +G   +A++LF+ELER+ +  D+ SF   L AC   G +
Sbjct: 316 FECAPTKQLSCWNSMILGLANNGCEERAMDLFLELERTGLEPDSVSFIGVLTACAHSGEV 375

Query: 121 -QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
            + G        KY +E  +    C++++ G  G +++A  +  +M ++ D I W+S++A
Sbjct: 376 HKAGEFFRLMREKYMIEPSIKHYTCMVNVLGGAGLLDEAEALIKKMPVEGDTIIWSSLLA 435

Query: 179 ASARNGNLELAFGFLHRLPN--PD-TISYNEVINGIAQFGDIEDAI 221
           A  +NGN+E+A    + L N  PD T  Y  + N  A +G  E+A+
Sbjct: 436 ACRKNGNVEMAKRAANCLKNLDPDETCGYVLMSNAYASYGLFEEAV 481


>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04750, mitochondrial; Flags: Precursor
 gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 661

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 157/516 (30%), Positives = 263/516 (50%), Gaps = 42/516 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHK 59
           P+     +L++ASS L   +  +Q+HC+I+ SG LS   ++  +L+ FY ++ +   A K
Sbjct: 131 PDRQTFLYLMKASSFL---SEVKQIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEK 187

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  +P P V S+N +I GY + G   +AL L+ ++    I  D Y+  S L  CG L  
Sbjct: 188 VFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSD 247

Query: 120 LQLGMAIHSKIVKYS--LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
           ++LG  +H  I +        ++++N L+DMY KC     A   F  M  KD+ SWN+++
Sbjct: 248 IRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMV 307

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
                                           G  + GD+E A  +   MP  +  SWNS
Sbjct: 308 V-------------------------------GFVRLGDMEAAQAVFDQMPKRDLVSWNS 336

Query: 238 ILTGYVNRNRVPEALH-LFGEMQ-SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
           +L GY  +      +  LF EM   + V  D  T  +++SG A    L+ G  +H  VI+
Sbjct: 337 LLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIR 396

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
             L     ++SAL+DMY KCG +E A  +F++   K++  W +MITG A +G+  + ++L
Sbjct: 397 LQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQL 456

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415
           F +++    + P++VT L VL ACSH+ +  ++    F  M   +G  P  EH  S++ L
Sbjct: 457 FGRMQE-EGVTPNNVTLLAVLTACSHSGL-VEEGLHVFNHMKDKFGFDPETEHYGSLVDL 514

Query: 416 MGQKGEVWRAQRMI-RELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474
           + + G V  A+ ++ +++       +W ++LSA     D++ A ++  E++KLE + +  
Sbjct: 515 LCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLEPEKEGG 574

Query: 475 YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCS 510
           YV+L N+Y + G W  +   R  M  RG++K AG S
Sbjct: 575 YVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYS 610


>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 165/543 (30%), Positives = 276/543 (50%), Gaps = 44/543 (8%)

Query: 13  SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSW 72
           SS LG   + Q L    LK+ F +  F+   L+  Y K++ L  A  +    P  SVV+W
Sbjct: 21  SSLLGRAAHAQILK--TLKTPFPA--FLYNHLVNMYAKLDHLNSAKLILELAPCRSVVTW 76

Query: 73  NSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132
            +LI+G VQ+G +  AL  F ++    +  + ++F   L A   L     G  +H+  VK
Sbjct: 77  TALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDTTGKQLHALAVK 136

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE---LA 189
             L   V +   + DMY K G + DA  VF EM  +++ +WN+ I+ S  +G  E   +A
Sbjct: 137 EGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIA 196

Query: 190 FGFLHRLP-NPDTISYN-------------------------------EVINGIAQF--- 214
           F  L R+   PD+I++                                 V NG+  F   
Sbjct: 197 FIELLRVGGKPDSITFCAFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGK 256

Query: 215 -GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
            G++E + M+   M   NS SW+S++  YV  N   +A  LF   + +D+   ++  S++
Sbjct: 257 CGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSV 316

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           L   AGLS + +G  + +  +K  ++ +I VASAL+DMY KCG ++ A+  F ++  +NL
Sbjct: 317 LCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNL 376

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393
           V+WNA++ GYA  G   K + L E++ +   + P  V+ +  L+ACS          + F
Sbjct: 377 VSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAG-DLKTGMKIF 435

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD 453
           ESM + YG++P  EH   ++ L+G+ G V  A   I+ + F     +W ALL A      
Sbjct: 436 ESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLGACRMHGK 495

Query: 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
            ++ +++A ++ +L+      +V+L N++ + G W+  +V+RN M+E G++K AG SWI 
Sbjct: 496 PELGKLAAEKLFELDPKDSGNHVVLSNMFAATGRWEEVTVVRNEMKEVGIKKGAGFSWIT 555

Query: 514 VEN 516
           V++
Sbjct: 556 VDS 558



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 188/403 (46%), Gaps = 46/403 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++    +L+AS+ L  DT  +QLH   +K G +++VFV  ++   Y K+  L DA+K+
Sbjct: 106 PNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKV 165

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P  ++ +WN+ IS  V  G+   ++  F+EL R     D+ +F + L AC     L
Sbjct: 166 FDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNACSDKLGL 225

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H  I++    + V ++N LID YGKCG VE +  VF  M +++ +SW+S+IAA 
Sbjct: 226 GPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAY 285

Query: 181 ARNGNLELAFGFLHRLPNPD-------------------TISYNEVINGIA--------- 212
            +N   E A     R    D                    I +   +  +A         
Sbjct: 286 VQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNI 345

Query: 213 -----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                      + G I++A    ++MP  N  SWN++L GY ++    +A+ L  EM S 
Sbjct: 346 FVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSA 405

Query: 262 DVPMDEY-TFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVE 319
              +  Y +    LS  +    L  GM I   + ++ G++      + L+D+  + G VE
Sbjct: 406 AGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVE 465

Query: 320 IA-DSMFRSLCRKNLVTWNAMITGYARNG--DLTKVI--ELFE 357
            A D + R      +  W A++     +G  +L K+   +LFE
Sbjct: 466 CAYDFIKRMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFE 508


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 146/532 (27%), Positives = 270/532 (50%), Gaps = 42/532 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH  ++ +G+    F++  L+  Y K   L  A K+F  +PQ ++VSW ++ISG  Q+
Sbjct: 25  KQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQN 84

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            K+ +A+  F  +         ++F+SA+ AC  LGS+++G  +H   +K+ +   + + 
Sbjct: 85  SKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVG 144

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP--- 199
           + L DMY KCG++ DA  VF EM  KD +SW ++I   ++ G  E A     ++ +    
Sbjct: 145 SNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVT 204

Query: 200 ------------------------------------DTISYNEVINGIAQFGDIEDAIMI 223
                                               D    N + +  ++ GD+E A  +
Sbjct: 205 IDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNV 264

Query: 224 LS-SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
                   N  S+  ++ GYV   ++ + L +F E++ + +  +E+TFS+++   A  +A
Sbjct: 265 FGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAA 324

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G  +H+ V+K   D    V+S L+DMY KCG +E A   F  +     + WN++++ 
Sbjct: 325 LEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSV 384

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           + ++G     I++FE++   R ++P+++TF+++L  CSH  +  ++  +YF SM K YG+
Sbjct: 385 FGQHGLGKDAIKIFERM-VDRGVKPNAITFISLLTGCSHAGL-VEEGLDYFYSMDKTYGV 442

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
            P  EH   +I L+G+ G +  A+  I  + F      W + L A     D ++ +++A 
Sbjct: 443 VPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAE 502

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           +++KLE  +    V+L N+Y +   W+    +R  MR+  ++K  G SW++V
Sbjct: 503 KLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDV 554



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 172/388 (44%), Gaps = 46/388 (11%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
           D  +    +    +   L+ G  +H+ ++         + N L++MY KCG ++ A+ +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 163 GEMIDKDIISWNSVIAASARNGNLELAF----GFLHRLPNPDTISYNEVINGIAQFGDIE 218
             M  ++++SW ++I+  ++N     A     G       P   +++  I   A  G IE
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 219 -----------------------------------DAIMILSSMPSPNSSSWNSILTGYV 243
                                              DA  +   MP  +  SW +++ GY 
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV 303
                 EAL  F +M  ++V +D++   + L     L A  +G  +HS V+K G ++ I 
Sbjct: 184 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIF 243

Query: 304 VASALLDMYSKCGQVEIADSMF--RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
           V +AL DMYSK G +E A ++F   S CR N+V++  +I GY     + K + +F +L+ 
Sbjct: 244 VGNALTDMYSKAGDMESASNVFGIDSECR-NVVSYTCLIDGYVETEQIEKGLSVFVELRR 302

Query: 362 VRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGE 421
            + ++P+  TF +++ AC++          + + M  ++   P V     ++ + G+ G 
Sbjct: 303 -QGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--LVDMYGKCGL 359

Query: 422 VWRAQRMIRELGFGSYGVVWRALLSASG 449
           + +A +   E+G     + W +L+S  G
Sbjct: 360 LEQAIQAFDEIG-DPTEIAWNSLVSVFG 386



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 113/264 (42%), Gaps = 42/264 (15%)

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           D    + ++   A    L  G  +H+ +I  G      + + L++MYSKCG+++ A  +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD-- 383
            ++ ++NLV+W AMI+G ++N   ++ I  F  ++   ++ P    F + + AC+     
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLGSI 122

Query: 384 ----------IPFDKVSEYF--ESMTKDYGIKPTVEHCCSMIRLMGQKGEV-WRAQRMIR 430
                     + F   SE F   ++   Y     +   C +   M  K EV W A  MI 
Sbjct: 123 EMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTA--MID 180

Query: 431 ELGFGSYGVVWRALL------------------SASGACSDLDVARISA---AEVIKLEG 469
             G+   G    ALL                  S  GAC  L   +      + V+KL  
Sbjct: 181 --GYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGF 238

Query: 470 DSD-YVYVMLCNLYTSHGNWDVAS 492
           +SD +V   L ++Y+  G+ + AS
Sbjct: 239 ESDIFVGNALTDMYSKAGDMESAS 262


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 166/554 (29%), Positives = 275/554 (49%), Gaps = 49/554 (8%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65
           L  L  A +DL      + +H  +   G  S    STAL   Y K    ADA ++F  +P
Sbjct: 22  LLKLCAARADLATG---RAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRMP 78

Query: 66  QPSVVSWNSLISGYVQSGKYRKALNLFVELERSE--IYADAYSFTSALAACGQLGSLQLG 123
               V+WN++++GY ++G    A+   V ++  E     D+ +  S L AC    +L   
Sbjct: 79  SRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHAC 138

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
             +H+  ++  L+  V ++  ++D Y KCG+VE A  VF  M  ++ +SWN++I   A N
Sbjct: 139 REVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADN 198

Query: 184 GNLELAFGFLHRLPNPDT----------------ISY----------------------- 204
           GN   A     R+                     + Y                       
Sbjct: 199 GNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVT 258

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSS-SWNSILTGYVNRNRVPE-ALHLFGEMQSKD 262
           N +I   A+    + A  + + + +  +  SWN+++ G+  +N  PE A  LF  MQ ++
Sbjct: 259 NALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFT-QNECPEDAERLFARMQLEN 317

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V  D +T  +++  +A +S       IH   I+  LD  + V +AL+DMYSKCG+V IA 
Sbjct: 318 VRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIAR 377

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F S   ++++TWNAMI GY  +G     +ELFE++K    L P+  TFL+VLAACSH 
Sbjct: 378 RLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSL-PNETTFLSVLAACSHA 436

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +  D+  +YF SM KDYG++P +EH  +M+ L+G+ G++  A   I+ +       V+ 
Sbjct: 437 GL-VDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYG 495

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
           A+L A     ++++A  SA  + +L  +    +V+L N+Y +   W   + +R  M ++G
Sbjct: 496 AMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKG 555

Query: 503 LRKEAGCSWIEVEN 516
           L+K  G S I+++N
Sbjct: 556 LQKTPGWSIIQLKN 569



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 172/387 (44%), Gaps = 46/387 (11%)

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
           +FT+ L  C     L  G A+H+++    L    + +  L +MY KC    DA  VF  M
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRL------PNPDTISY--------------- 204
             +D ++WN+V+A  ARNG    A   + R+        PD+++                
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 205 --------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
                                 V++   + G +E A  +   MP  NS SWN+++ GY +
Sbjct: 138 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYAD 197

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV 304
                EA+ LF  M  + V + + +    L     L  L     +H  +++ GL +++ V
Sbjct: 198 NGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSV 257

Query: 305 ASALLDMYSKCGQVEIADSMFRSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363
            +AL+  Y+KC + ++A  +F  L  +K  ++WNAMI G+ +N        LF +++ + 
Sbjct: 258 TNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQ-LE 316

Query: 364 DLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW 423
           +++PDS T ++V+ A +    P    + +    +  + +   V    ++I +  + G V 
Sbjct: 317 NVRPDSFTLVSVIPAVADISDPLQ--ARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVS 374

Query: 424 RAQRMIRELGFGSYGVVWRALLSASGA 450
            A+R+  +     + + W A++   G+
Sbjct: 375 IARRLF-DSARDRHVITWNAMIHGYGS 400



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 189/419 (45%), Gaps = 45/419 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L A +D      C+++H + L++G    V VSTA++  Y K  ++  A  +
Sbjct: 117 PDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAV 176

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P  + VSWN++I GY  +G   +A+ LF  + +  +     S  +AL ACG+LG L
Sbjct: 177 FDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYL 236

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI-ISWNSVIAA 179
                +H  +V+  L   V + N LI  Y KC   + A  VF E+ +K   ISWN++I  
Sbjct: 237 DEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILG 296

Query: 180 SARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGD---------------IEDA 220
             +N   E A     R+      PD+ +   VI  +A   D               ++  
Sbjct: 297 FTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQD 356

Query: 221 IMILSSMPSPNSS--------------------SWNSILTGYVNRNRVPEALHLFGEMQS 260
           + +L+++    S                     +WN+++ GY +      A+ LF EM+ 
Sbjct: 357 VYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKG 416

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVE 319
                +E TF ++L+  +    +  G    + + K  GL+  +     ++D+  + G+++
Sbjct: 417 TGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLD 476

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ-LKTVRDLQPDSVTFLNVLA 377
            A S  +++  +  ++    + G  +   L K +EL E+  + + +L P+   +  +LA
Sbjct: 477 EAWSFIKNMPIEPGISVYGAMLGACK---LHKNVELAEESAQIIFELGPEEGVYHVLLA 532


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 163/565 (28%), Positives = 287/565 (50%), Gaps = 46/565 (8%)

Query: 3   EYVLFH-LLRASSDLGWDTYCQQLHCYILKSGFLSNVF--VSTALMGFYRKINSLADAHK 59
           +YV F  LL   +D        Q+H + +K GF +N+F  V   L+  Y ++  L  A  
Sbjct: 140 DYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACV 199

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F EI     V++N+LI+GY + G Y +A++LF+++ +S      ++F+  L A   L  
Sbjct: 200 LFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHD 259

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
             LG  +H   V     R   + N ++  Y K   V +   +F EM + D +S+N VI++
Sbjct: 260 FALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISS 319

Query: 180 SARNGNLELAF---------GFLHR----------------------------LPNPDTI 202
            ++    E +          GF  R                            +   D+I
Sbjct: 320 YSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSI 379

Query: 203 SY--NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +  N +++  A+    ++A +I  S+   ++ SW ++++GYV +      L LF +M+ 
Sbjct: 380 LHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRG 439

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            ++  D+ TF+T+L   AG ++L  G  +H+ +I+ G   ++   S L+DMY+KCG ++ 
Sbjct: 440 ANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKD 499

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  +  +N V+WNA+I+ YA NGD    I  F ++     LQPDSV+ L VL ACS
Sbjct: 500 AVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKM-IQSGLQPDSVSILGVLIACS 558

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H     ++ +E+F++M+  YGI P  +H   M+ L+G+ G    A++++ E+ F    ++
Sbjct: 559 HCGF-VEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIM 617

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSD-YVYVMLCNLYTSHGNWDVASVMRNFMR 499
           W ++L+A     +  +A  +A ++  +E   D   YV + N+Y + G W+    ++  MR
Sbjct: 618 WSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMR 677

Query: 500 ERGLRKEAGCSWIEVEN-VAAHSSN 523
           ERG++K    SW+EV + +   SSN
Sbjct: 678 ERGIKKVPAYSWVEVNHKIHVFSSN 702



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 179/385 (46%), Gaps = 42/385 (10%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           N   +  ++  Y K+  L+ A  +F  +P  +VV+W  L+  Y  +  + +A  LF ++ 
Sbjct: 74  NTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMC 133

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG--VVIANCLIDMYGKCGS 154
           RS    D  +FT+ L  C           +H+  VK   +    + + N L+  Y +   
Sbjct: 134 RSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRR 193

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVI-- 208
           ++ A  +F E++DKD +++N++I    ++G    A     ++      P   +++ V+  
Sbjct: 194 LDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKA 253

Query: 209 -----------------------------NGIAQFGDIEDAIM----ILSSMPSPNSSSW 235
                                        N I  F    D ++    + + MP  +  S+
Sbjct: 254 VVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSY 313

Query: 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
           N +++ Y    +  E+L+LF EMQ        + F+TMLS  A LS+L  G  +H   I 
Sbjct: 314 NVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIV 373

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
              D+ + V ++L+DMY+KC   + A+ +F+SL +++ V+W A+I+GY + G     ++L
Sbjct: 374 ATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKL 433

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACS 380
           F +++   +L+ D  TF  VL A +
Sbjct: 434 FTKMRGA-NLRADQSTFATVLKASA 457



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/423 (22%), Positives = 180/423 (42%), Gaps = 83/423 (19%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +L+A   L      QQLH   + +GF  +  V   ++ FY K + + +   +
Sbjct: 242 PSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNL 301

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+   VS+N +IS Y Q+ +Y ++LNLF E++        + F + L+    L SL
Sbjct: 302 FNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSL 361

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           Q+G  +H + +  + +  + + N L+DMY KC   ++A  +F  +  +  +SW ++I+  
Sbjct: 362 QVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGY 421

Query: 181 ARNG--------------------------NLELAFGF--------LH----RLPNPDTI 202
            + G                           L+ + GF        LH    R  N + +
Sbjct: 422 VQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENV 481

Query: 203 -SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
            S + +++  A+ G I+DA+ +   MP  N+ SWN++++ Y +      A+  F +M   
Sbjct: 482 FSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKM--- 538

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
                                           I+ GL    V    +L   S CG VE  
Sbjct: 539 --------------------------------IQSGLQPDSVSILGVLIACSHCGFVEQG 566

Query: 322 DSMFRSLCRKNLVT-----WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
              F+++     +T     +  M+    RNG   +  +L +++      +PD + + +VL
Sbjct: 567 TEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMP----FEPDEIMWSSVL 622

Query: 377 AAC 379
            AC
Sbjct: 623 NAC 625



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 3/215 (1%)

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILS 225
            + D    N  +    R G +  A      +P+ +T+S N +I+G  + GD+  A  +  
Sbjct: 40  FNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSARHLFD 99

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           +MP     +W  ++  Y   N   EA  LF +M       D  TF+T+L G         
Sbjct: 100 AMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPGCNDAVPQNA 159

Query: 286 GMLIHSCVIKQGLDAS--IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
              +H+  +K G D +  + V + LL  Y +  ++++A  +F  +  K+ VT+N +ITGY
Sbjct: 160 VGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGY 219

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            ++G  T+ I LF +++     +P   TF  VL A
Sbjct: 220 EKDGLYTEAIHLFLKMRQ-SGHKPSDFTFSGVLKA 253



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 23/219 (10%)

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           +IK G +     ++  ++   + GQV  A  ++  +  KN V+ N MI+GY + GDL+  
Sbjct: 35  IIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSA 94

Query: 353 IELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTK-----DYGIKPTV 406
             LF       D  PD +V    +L      +  FD+  + F  M +     DY    T+
Sbjct: 95  RHLF-------DAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTL 147

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGS--YGVVWRALLSASGACSDLDVARISAAEV 464
              C+        G+V        +LGF +  +  V   LL +      LD+A +   E+
Sbjct: 148 LPGCNDAVPQNAVGQV---HAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEI 204

Query: 465 IKLEGDSDYV-YVMLCNLYTSHGNWDVASVMRNFMRERG 502
           +    D D V +  L   Y   G +  A  +   MR+ G
Sbjct: 205 L----DKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSG 239


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/481 (30%), Positives = 246/481 (51%), Gaps = 33/481 (6%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           ++  S +++  +     + +A K+F E+ +  +V+W++LI+ + Q+  Y +A+  FV + 
Sbjct: 174 SIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMH 233

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           +  +  D     SAL+AC  L  + +G  IHS  +K   E  + + N LI MY KCG + 
Sbjct: 234 KIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIM 293

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
            A  +F E    D+ISWNS+                               I+G  +   
Sbjct: 294 VARKLFDEAYLLDLISWNSM-------------------------------ISGYLKCNL 322

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           +++A  I  SMP  +  SW+S+++GY   +   E L LF EMQ      DE T  +++S 
Sbjct: 323 VDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA 382

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            A L+AL  G  +H+ + + GL  ++++ + L+DMY KCG VE A  +F  +  K + TW
Sbjct: 383 CARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTW 442

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           NA+I G A NG +   +++F  +K    + P+ +TF+ VL AC H  +  D+   +F SM
Sbjct: 443 NALILGLAMNGLVESSLDMFSNMKKCH-VTPNEITFMGVLGACRHMGL-VDEGQHHFYSM 500

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
             D+ I+P V+H   M+ L+G+ G++  A+ ++  +        W ALL A     D ++
Sbjct: 501 IHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEM 560

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            R    ++I+L+ D D  +V+L N+Y S G WD    +R  M +  + K  GCS IE   
Sbjct: 561 GRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANG 620

Query: 517 V 517
           V
Sbjct: 621 V 621



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 182/380 (47%), Gaps = 13/380 (3%)

Query: 29  ILKSGFLSNVFVSTALMGF--YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYR 86
           +L +GF+   + ++ L+ F  +     +    ++F  I   +   WN +I  Y+Q+    
Sbjct: 1   MLLTGFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPH 60

Query: 87  KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
            A  L+  +  + + AD Y++   + AC    S      +H+ ++K   +  V + N LI
Sbjct: 61  FAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLI 120

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNE 206
           + +  C ++ DA  VF E    D +SWNS++A     GN+E A    H++P    I+ N 
Sbjct: 121 NCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNS 180

Query: 207 VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
           +I      G + +A  +   M   +  +W++++  +       EA+  F  M    V +D
Sbjct: 181 MIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVD 240

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
           E    + LS  A L  +  G LIHS  +K G ++ I + +AL+ MYSKCG + +A  +F 
Sbjct: 241 EVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFD 300

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP--DSVTFLNVLAACSHTDI 384
                +L++WN+MI+GY +         L +  K + D  P  D V++ ++++  +  D+
Sbjct: 301 EAYLLDLISWNSMISGYLK-------CNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDL 353

Query: 385 PFDKVSEYFESMTKDYGIKP 404
            FD+    F+ M    G KP
Sbjct: 354 -FDETLALFQEMQMS-GFKP 371



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 128/273 (46%), Gaps = 27/273 (9%)

Query: 29  ILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKA 88
           +    +L ++    +++  Y K N + +A  +F  +P+  VVSW+S+ISGY Q+  + + 
Sbjct: 298 LFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDET 357

Query: 89  LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
           L LF E++ S    D  +  S ++AC +L +L+ G  +H+ I +  L   V++   LIDM
Sbjct: 358 LALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDM 417

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISY 204
           Y KCG VE A+ VF  MI+K I +WN++I   A NG +E +      +      P+ I++
Sbjct: 418 YMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITF 477

Query: 205 NEVINGIAQFGDIEDAI-----MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
             V+      G +++       MI      PN   +  ++       ++ EA  L   M 
Sbjct: 478 MGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRM- 536

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
               PM                  TWG L+ +C
Sbjct: 537 ----PMTP-------------DVATWGALLGAC 552



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 114/232 (49%), Gaps = 5/232 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  L  ++ A + L      + +H YI ++G   NV + T L+  Y K   +  A ++
Sbjct: 371 PDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEV 430

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  + +WN+LI G   +G    +L++F  +++  +  +  +F   L AC  +G +
Sbjct: 431 FYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLV 490

Query: 121 QLGM-AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G    +S I  + ++  V    C++D+ G+ G +++A  +   M +  D+ +W +++ 
Sbjct: 491 DEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLG 550

Query: 179 ASARNGNLELAFGFLHRLP--NPDTISYNEVINGI-AQFGDIEDAIMILSSM 227
           A  ++G+ E+      +L    PD   ++ +++ I A  G  +D + I   M
Sbjct: 551 ACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMM 602


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 158/553 (28%), Positives = 277/553 (50%), Gaps = 44/553 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +     + AS D   D     LH + +  GF SN+FV++AL+  Y K + +A A K+
Sbjct: 104 PDNFTYAFAISASPD---DNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKV 160

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P    V WN++I+G V++  Y  ++ +F ++    +  D+ +  + L A  ++  +
Sbjct: 161 FDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEV 220

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           ++GM I    +K        +   LI ++ KC  V+ A  +FG +   D++S+N++I+  
Sbjct: 221 KVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGF 280

Query: 181 ARNGNLELA----------------------------FGFLHR-------LPNPDTISYN 205
           + NG  E A                            FG LH             TI   
Sbjct: 281 SCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQP 340

Query: 206 EVINGI----AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
            V   +    ++  +I+ A  +         ++WN++++GY        A+ LF EM + 
Sbjct: 341 SVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTT 400

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           +   +  T +++LS  A L AL++G  +H  +  + L+ +I V++AL+DMY+KCG +  A
Sbjct: 401 EFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEA 460

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F     KN VTWN MI GY  +G   + ++LF ++  +   QP SVTFL+VL ACSH
Sbjct: 461 SQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHL-GFQPSSVTFLSVLYACSH 519

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +   +  E F +M   Y I+P  EH   M+ ++G+ G++ +A   IR++       VW
Sbjct: 520 AGL-VREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVW 578

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
             LL A     D ++AR+++  + +L+  +   YV+L N+Y+   N+  A+ +R  +++R
Sbjct: 579 GTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKR 638

Query: 502 GLRKEAGCSWIEV 514
            L K  GC+ IEV
Sbjct: 639 NLSKTPGCTLIEV 651



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 113/263 (42%), Gaps = 44/263 (16%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGY---VNRNRVPEALHLFG 256
           D  +  ++   +   G    A  +  S+P P+   +N ++ G+    + + +    HL  
Sbjct: 39  DLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSPDASSISFYTHL-- 96

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
            +++  +  D +T++  +S     +    GM +H+  +  G D+++ VASAL+D+Y K  
Sbjct: 97  -LKNTTLSPDNFTYAFAISASPDDN---LGMCLHAHAVVDGFDSNLFVASALVDLYCKFS 152

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           +V  A  +F  +  ++ V WN MITG  RN      +++F+ +   + ++ DS T   VL
Sbjct: 153 RVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDM-VAQGVRLDSTTVATVL 211

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
            A +             + +    GI+     C ++                  +LGF  
Sbjct: 212 PAVAE-----------MQEVKVGMGIQ-----CLAL------------------KLGFHF 237

Query: 437 YGVVWRALLSASGACSDLDVARI 459
              V   L+S    C D+D AR+
Sbjct: 238 DDYVLTGLISVFSKCEDVDTARL 260


>gi|147820082|emb|CAN67135.1| hypothetical protein VITISV_005195 [Vitis vinifera]
          Length = 800

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 174/564 (30%), Positives = 276/564 (48%), Gaps = 71/564 (12%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
           Y    +L+  + +G+    QQ+H  I+K G+  NVF  +AL+  Y K   + DA ++F  
Sbjct: 101 YSFGSILKGVACVGYVEVGQQVHSMIVKIGYEGNVFAGSALLDMYAKCERVEDAFEVFKS 160

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLF--VELERSEIYADAYSFTSALAACGQLGSLQ 121
           I   + V+WN+LISGY   G    A  L   +ELE  EI  D  +F   L         +
Sbjct: 161 INIRNSVTWNALISGYAHVGDRGTAFWLLDCMELEGVEI--DDGTFAPLLTLLDDPDLHK 218

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF-GEMIDKDIISWNSVIAAS 180
           L   +H+KIVK+ L     + N +I  Y +CGS+EDA  VF G +  +D+++WNS++AA 
Sbjct: 219 LTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAY 278

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVING-------------------------- 210
             N   E AF     +      PD  +Y  VI+                           
Sbjct: 279 LVNNQEEEAFELFLEMQVLGFEPDIYTYTSVISAAFEXAHQGQGKSLHGLVIKRGLEFLV 338

Query: 211 ------IAQF-----GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                 IA +       +++A+ I  S+ + +  SWNSILTG+       +AL  F  M+
Sbjct: 339 PISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMR 398

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           S+ V +D Y FS +L   + L+ L  G  +H                        CG +E
Sbjct: 399 SQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVL----------------------CGVIE 436

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A   F +  + + + WN++I GYA++G     ++LF  +K  R ++ D +TF+ VL AC
Sbjct: 437 DARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKD-RRVKLDHITFVAVLTAC 495

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH  +  +  S + +SM  DYGI P +EH   MI L+G+ G +  A+ +I  + F    +
Sbjct: 496 SHIGLVEEGWS-FLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAM 554

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           VW+ LL A   C D+++A   A+ +++LE +    YV+L +++     W+  + ++  M+
Sbjct: 555 VWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMK 614

Query: 500 ERGLRKEAGCSWIEVENVAAHSSN 523
           ERG++K  G SWIEV+N   HS N
Sbjct: 615 ERGVKKVPGWSWIEVKN-EVHSFN 637



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/397 (29%), Positives = 197/397 (49%), Gaps = 43/397 (10%)

Query: 26  HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKY 85
           HC  +KSG  ++++ +  ++  Y K   +  A KMF E  Q   VSWN++I+G V  G +
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFDETSQRDAVSWNTMIAGXVNFGNF 81

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
             AL     ++R     D YSF S L     +G +++G  +HS IVK   E  V   + L
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMIVKIGYEGNVFAGSAL 141

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL------------ 193
           +DMY KC  VEDA  VF  +  ++ ++WN++I+  A  G+   AF  L            
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAHVGDRGTAFWLLDCMELEGVEIDD 201

Query: 194 ---------------HRLPN------------PDTISYNEVINGIAQFGDIEDAIMIL-S 225
                          H+L               DT   N +I   ++ G IEDA  +   
Sbjct: 202 GTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDG 261

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           ++ + +  +WNS+L  Y+  N+  EA  LF EMQ      D YT+++++S     +    
Sbjct: 262 AIETRDLVTWNSMLAAYLVNNQEEEAFELFLEMQVLGFEPDIYTYTSVISAAFEXAHQGQ 321

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMY--SKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
           G  +H  VIK+GL+  + ++++L+ MY  S    ++ A ++F SL  K+ V+WN+++TG+
Sbjct: 322 GKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGF 381

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +++G     ++ FE +++ + +  D   F  VL +CS
Sbjct: 382 SQSGLSEDALKFFENMRS-QYVVIDHYAFSAVLRSCS 417



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 124/249 (49%), Gaps = 15/249 (6%)

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
           N +I+G A+ G+I  A  +       ++ SWN+++ G VN      AL     M+     
Sbjct: 38  NNIISGYAKCGEIRIASKMFDETSQRDAVSWNTMIAGXVNFGNFETALEFLKSMKRYGFA 97

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
           +D Y+F ++L G+A +  +  G  +HS ++K G + ++   SALLDMY+KC +VE A  +
Sbjct: 98  VDGYSFGSILKGVACVGYVEVGQQVHSMIVKIGYEGNVFAGSALLDMYAKCERVEDAFEV 157

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
           F+S+  +N VTWNA+I+GYA  GD      L + ++ +  ++ D  TF          D 
Sbjct: 158 FKSINIRNSVTWNALISGYAHVGDRGTAFWLLDCME-LEGVEIDDGTF--APLLTLLDDP 214

Query: 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI------RELGFGSYG 438
              K++    +    +G+      C ++I    + G +  A+R+       R+L      
Sbjct: 215 DLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDL------ 268

Query: 439 VVWRALLSA 447
           V W ++L+A
Sbjct: 269 VTWNSMLAA 277



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 8/182 (4%)

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
           +  +AL    + H   IK G  ASI  A+ ++  Y+KCG++ IA  MF    +++ V+WN
Sbjct: 10  SSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFDETSQRDAVSWN 69

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL--AACSHTDIPFDKVSEYFES 395
            MI G    G+    +E  + +K       D  +F ++L   AC    + + +V +   S
Sbjct: 70  TMIAGXVNFGNFETALEFLKSMKRY-GFAVDGYSFGSILKGVAC----VGYVEVGQQVHS 124

Query: 396 MTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLD 455
           M    G +  V    +++ +  +   V  A  + + +   +  V W AL+S      D  
Sbjct: 125 MIVKIGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRN-SVTWNALISGYAHVGDRG 183

Query: 456 VA 457
            A
Sbjct: 184 TA 185


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 155/553 (28%), Positives = 284/553 (51%), Gaps = 41/553 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N++VL  +L+ +  +        +H    K G   N FV + L+  Y   + ++DA  +F
Sbjct: 161 NQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVF 220

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             I +   V W +++S Y ++     A  +F ++  S    + ++ TS L A   L S+ 
Sbjct: 221 NGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVV 280

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           LG  IH   +K   +    +   L+DMY KCG ++DA   F  +   D+I  + +I+  A
Sbjct: 281 LGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYA 340

Query: 182 RNGNLELAFGFLHR------LPNPDTISY------------------------------- 204
           ++   E AF    R      LPN  ++S                                
Sbjct: 341 QSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLF 400

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +++  A+  D++ ++ I SS+   N  SWN+I+ G+       EAL +F EMQ+  
Sbjct: 401 VGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQ 460

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +P  + T+S++L   A  +++     IH  + K   +   V+ ++L+D Y+KCG +  A 
Sbjct: 461 MPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDAL 520

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F+ L  +++++WNA+I+GYA +G     +ELF+++    +++ + +TF+ +L+ CS T
Sbjct: 521 KVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNK-SNVESNDITFVALLSVCSST 579

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +    +S  F+SM  D+GIKP++EH   ++RL+G+ G +  A + I ++      +VWR
Sbjct: 580 GLVNHGLS-LFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWR 638

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
           ALLS+     ++ + R SA +++++E   +  YV+L N+Y + G+ D  +++R  MR  G
Sbjct: 639 ALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIG 698

Query: 503 LRKEAGCSWIEVE 515
           +RK  G SW+E++
Sbjct: 699 VRKVPGLSWVEIK 711



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 161/320 (50%), Gaps = 27/320 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNEY L  +L+A +++    + +Q+H + +K G  S++FV  ALM FY K N +  + K+
Sbjct: 362 PNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKI 421

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   + VSWN+++ G+ QSG   +AL++F E++ +++     +++S L AC    S+
Sbjct: 422 FSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASI 481

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +    IH  I K +     VI N LID Y KCG + DA+ VF  ++++DIISWN++I+  
Sbjct: 482 RHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGY 541

Query: 181 ARNGNLELAFGFLHRLPNPDT----ISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A +G    A     R+   +     I++  +++  +  G +   + +  SM       P+
Sbjct: 542 ALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPS 601

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  I+       R+ +AL   G     D+P             +  SA+ W  L+ S
Sbjct: 602 MEHYTCIVRLLGRAGRLNDALQFIG-----DIP-------------SAPSAMVWRALLSS 643

Query: 292 CVIKQGLDASIVVASALLDM 311
           C+I + +      A  +L++
Sbjct: 644 CIIHKNVALGRFSAEKILEI 663



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 190/401 (47%), Gaps = 42/401 (10%)

Query: 23  QQLHCYILKSGFLS--NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           + +H ++++ G +   ++F +  L+  Y K+  LA A ++F  +P+ ++VS+ +L+  + 
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHA 138

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           Q G +  A  LF  L       + +  T+ L     + +  L   +HS   K   +    
Sbjct: 139 QRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAF 198

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
           + + LID Y  C  V DA  VF  ++ KD + W ++++  + N   E AF    ++    
Sbjct: 199 VGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSG 258

Query: 197 --PNP---------------------------DTISYNE------VINGIAQFGDIEDAI 221
             PNP                            T++  E      +++  A+ GDI+DA 
Sbjct: 259 CKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDAR 318

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           +    +P  +    + +++ Y   N+  +A  LF  +    V  +EY+ S++L     + 
Sbjct: 319 LAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMV 378

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L +G  IH+  IK G ++ + V +AL+D Y+KC  ++ +  +F SL   N V+WN ++ 
Sbjct: 379 QLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVV 438

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           G++++G   + + +F +++  + +    VT+ +VL AC+ T
Sbjct: 439 GFSQSGLGEEALSVFCEMQAAQ-MPCTQVTYSSVLRACAST 478



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 162/361 (44%), Gaps = 40/361 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + L  +L+A+  L      + +H   +K+   +   V  AL+  Y K   + DA   
Sbjct: 261 PNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLA 320

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP   V+  + +IS Y QS +  +A  LF+ L RS +  + YS +S L AC  +  L
Sbjct: 321 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQL 380

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH+  +K   E  + + N L+D Y KC  ++ ++ +F  + D + +SWN+++   
Sbjct: 381 DFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGF 440

Query: 181 ARNGNLELAFGFL-----HRLP----------------------------------NPDT 201
           +++G  E A          ++P                                  N DT
Sbjct: 441 SQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDT 500

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           +  N +I+  A+ G I DA+ +   +   +  SWN+I++GY    +  +AL LF  M   
Sbjct: 501 VIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKS 560

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +V  ++ TF  +LS  +    +  G+ L  S  I  G+  S+   + ++ +  + G++  
Sbjct: 561 NVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLND 620

Query: 321 A 321
           A
Sbjct: 621 A 621


>gi|225216998|gb|ACN85287.1| EMB2261 putative [Oryza australiensis]
          Length = 626

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 167/545 (30%), Positives = 277/545 (50%), Gaps = 52/545 (9%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKI-NSLADAHKMFVEIPQPSVVSWNSLISGY 79
           YC  LH    ++GFL++ +++ AL+ FY ++   L  A + F ++P   VV+ +S+++ +
Sbjct: 58  YC--LHARAARAGFLADRYLANALLAFYVRLPRHLPHALRAFDDLPHRDVVAHSSILAAF 115

Query: 80  VQSGKYRKALNLFVEL---ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE 136
           +++G  R+AL     +      ++  +A++ ++A+ AC  L   + G  +H  ++   + 
Sbjct: 116 LRAGMPRRALASLRAMLAGADDDVSPNAHALSAAVKACAVLRDRKAGACLHGSVLVRGMG 175

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN------------- 183
              V+ + L+DMYG   +  DA   F EM   D I + S+I+A  RN             
Sbjct: 176 DDDVVLSSLVDMYGHVAAPGDARKAFEEMRGPDGICYTSLISAFVRNDWFEEAVRWFRSM 235

Query: 184 -------------GNLELAFGFLHRLPNPDTISYNEVINGI--------------AQFGD 216
                        G++  A G L R           V  G+              A+ G 
Sbjct: 236 LTMNGVRPDGCTFGSMMTALGNLKRGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGL 295

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           + +A  +   M   N  S  ++L GY       + + LF EM  +D   D Y+  T+L  
Sbjct: 296 MVEARKVFDRMEVRNEVSRCALLGGYCQNGEYEKVIALFREMDKED--GDWYSLGTVLRA 353

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            AGLS++  G  IH   ++ G    +VV SAL+D+Y+KCG V+ A S+F +   +N +TW
Sbjct: 354 CAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYACSVFEASTVRNTITW 413

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACSHTDIPFDKVSEYFES 395
           NAMI+G+A+NG   + I LF ++  VR+  +PD ++F+ VL ACSHT +  ++   YF+S
Sbjct: 414 NAMISGFAQNGHGERAINLFNRM--VREGPRPDYISFIGVLFACSHTGM-VEQGRNYFDS 470

Query: 396 MTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLD 455
           M KDYGI P +EH   M+ L+ +   +  A+ +I E  F +   +W A+L AS   S+ D
Sbjct: 471 MCKDYGIAPGIEHYNCMVDLLSRVELLEEAEDLINESPFRNDSSLWAAILGASATHSNPD 530

Query: 456 VARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           VA   A ++++LE      Y++L N+Y + G W+ A  +R  M  R ++KE G SWI+  
Sbjct: 531 VAERVAKKMMELEPQYHLSYILLENVYRTVGRWEDALEIRRLMESRKVKKEPGMSWIDAN 590

Query: 516 NVAAH 520
               H
Sbjct: 591 RSKLH 595



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 121/231 (52%), Gaps = 6/231 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      ++ A  +L   +  +Q H  ++  G   NV V ++ +  Y K   + +A K+
Sbjct: 243 PDGCTFGSMMTALGNLKRGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGLMVEARKV 302

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   + VS  +L+ GY Q+G+Y K + LF E+++ +   D YS  + L AC  L S+
Sbjct: 303 FDRMEVRNEVSRCALLGGYCQNGEYEKVIALFREMDKED--GDWYSLGTVLRACAGLSSV 360

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH + ++    R VV+ + L+D+Y KCG+V+ A  VF     ++ I+WN++I+  
Sbjct: 361 KPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYACSVFEASTVRNTITWNAMISGF 420

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           A+NG+ E A    +R+    P PD IS+  V+   +  G +E       SM
Sbjct: 421 AQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQGRNYFDSM 471



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 110/231 (47%), Gaps = 5/231 (2%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
           Y L  +LRA + L      +++HC  L+ G   +V V +AL+  Y K  ++  A  +F  
Sbjct: 345 YSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYACSVFEA 404

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
               + ++WN++ISG+ Q+G   +A+NLF  + R     D  SF   L AC   G ++ G
Sbjct: 405 STVRNTITWNAMISGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQG 464

Query: 124 MAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGE-MIDKDIISWNSVIAASA 181
                 + K Y +  G+   NC++D+  +   +E+A  +  E     D   W +++ ASA
Sbjct: 465 RNYFDSMCKDYGIAPGIEHYNCMVDLLSRVELLEEAEDLINESPFRNDSSLWAAILGASA 524

Query: 182 RNGNLELAFGFLHRLPNPDT---ISYNEVINGIAQFGDIEDAIMILSSMPS 229
            + N ++A     ++   +    +SY  + N     G  EDA+ I   M S
Sbjct: 525 THSNPDVAERVAKKMMELEPQYHLSYILLENVYRTVGRWEDALEIRRLMES 575



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/409 (20%), Positives = 168/409 (41%), Gaps = 47/409 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + L   ++A + L        LH  +L  G   +  V ++L+  Y  + +  DA K 
Sbjct: 141 PNAHALSAAVKACAVLRDRKAGACLHGSVLVRGMGDDDVVLSSLVDMYGHVAAPGDARKA 200

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLGS 119
           F E+  P  + + SLIS +V++  + +A+  F   L  + +  D  +F S + A G L  
Sbjct: 201 FEEMRGPDGICYTSLISAFVRNDWFEEAVRWFRSMLTMNGVRPDGCTFGSMMTALGNLKR 260

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
              G   H+++V   L   V++ +  +DMY KCG + +A  VF  M  ++ +S  +++  
Sbjct: 261 GSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMEVRNEVSRCALLGG 320

Query: 180 SARNGNLELAFGFLHRLPNP-------------------------------------DTI 202
             +NG  E        +                                        D +
Sbjct: 321 YCQNGEYEKVIALFREMDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVV 380

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             + +++  A+ G ++ A  +  +    N+ +WN++++G+        A++LF  M  + 
Sbjct: 381 VESALVDLYAKCGAVDYACSVFEASTVRNTITWNAMISGFAQNGHGERAINLFNRMVREG 440

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIA 321
              D  +F  +L   +    +  G      + K  G+   I   + ++D+ S+   +E A
Sbjct: 441 PRPDYISFIGVLFACSHTGMVEQGRNYFDSMCKDYGIAPGIEHYNCMVDLLSRVELLEEA 500

Query: 322 DSMF-RSLCRKNLVTWNAMITGYA--RNGDLTKVIELFEQLKTVRDLQP 367
           + +   S  R +   W A++   A   N D+ + +      K + +L+P
Sbjct: 501 EDLINESPFRNDSSLWAAILGASATHSNPDVAERVA-----KKMMELEP 544


>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 165/543 (30%), Positives = 276/543 (50%), Gaps = 44/543 (8%)

Query: 13  SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSW 72
           SS LG   + Q L    LK+ F +  F+   L+  Y K++ L  A  +    P  SVV+W
Sbjct: 21  SSLLGRAAHAQILK--TLKTPFPA--FLYNHLVNMYAKLDHLNSAKLILELAPCRSVVTW 76

Query: 73  NSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132
            +LI+G VQ+G +  AL  F ++    +  + ++F   L A   L     G  +H+  VK
Sbjct: 77  TALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDTTGKQLHALAVK 136

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE---LA 189
             L   V +   + DMY K G + DA  VF EM  +++ +WN+ I+ S  +G  E   +A
Sbjct: 137 EGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIA 196

Query: 190 FGFLHRLP-NPDTISYN-------------------------------EVINGIAQF--- 214
           F  L R+   PD+I++                                 V NG+  F   
Sbjct: 197 FIELLRVGGKPDSITFCXFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGK 256

Query: 215 -GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
            G++E + M+   M   NS SW+S++  YV  N   +A  LF   + +D+   ++  S++
Sbjct: 257 CGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSV 316

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           L   AGLS + +G  + +  +K  ++ +I VASAL+DMY KCG ++ A+  F ++  +NL
Sbjct: 317 LCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNL 376

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393
           V+WNA++ GYA  G   K + L E++ +   + P  V+ +  L+ACS          + F
Sbjct: 377 VSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAG-DLKTGMKIF 435

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD 453
           ESM + YG++P  EH   ++ L+G+ G V  A   I+ + F     +W ALL A      
Sbjct: 436 ESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLGACRMHGK 495

Query: 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
            ++ +++A ++ +L+      +V+L N++ + G W+  +V+RN M+E G++K AG SWI 
Sbjct: 496 PELGKLAAEKLFELDPKDSGNHVVLSNMFAATGRWEEVTVVRNEMKEVGIKKGAGFSWIT 555

Query: 514 VEN 516
           V++
Sbjct: 556 VDS 558



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 187/403 (46%), Gaps = 46/403 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++    +L+AS+ L  DT  +QLH   +K G +++VFV  ++   Y K+  L DA+K+
Sbjct: 106 PNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKV 165

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P  ++ +WN+ IS  V  G+   ++  F+EL R     D+ +F   L AC     L
Sbjct: 166 FDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCXFLNACSDKLGL 225

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H  I++    + V ++N LID YGKCG VE +  VF  M +++ +SW+S+IAA 
Sbjct: 226 GPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAY 285

Query: 181 ARNGNLELAFGFLHRLPNPD-------------------TISYNEVINGIA--------- 212
            +N   E A     R    D                    I +   +  +A         
Sbjct: 286 VQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNI 345

Query: 213 -----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                      + G I++A    ++MP  N  SWN++L GY ++    +A+ L  EM S 
Sbjct: 346 FVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSA 405

Query: 262 DVPMDEY-TFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVE 319
              +  Y +    LS  +    L  GM I   + ++ G++      + L+D+  + G VE
Sbjct: 406 AGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVE 465

Query: 320 IA-DSMFRSLCRKNLVTWNAMITGYARNG--DLTKVI--ELFE 357
            A D + R      +  W A++     +G  +L K+   +LFE
Sbjct: 466 CAYDFIKRMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFE 508


>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 629

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 150/529 (28%), Positives = 274/529 (51%), Gaps = 37/529 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH  I++     ++ ++  L+           A ++F ++ +P+V   NSLI  +  +
Sbjct: 36  KQLHAQIIRRNLHQDLHIAPKLISALSLCRQTNLALRVFNQVQEPNVHLCNSLIRAHALN 95

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            +  +A  +F E++R  ++AD +++   L AC  L  L +   +H+ I K  L   + + 
Sbjct: 96  SQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNHIEKLGLSSDIYVP 155

Query: 143 NCLIDMYGKCG---------------------------------SVEDAIGVFGEMIDKD 169
           N LID Y +CG                                  + DA  +F EM  +D
Sbjct: 156 NALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDEMPQRD 215

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           +ISWN+++   AR   +  AF    ++P  +T+S++ ++ G ++ GD+E A ++   MP 
Sbjct: 216 LISWNTMLDGYARCREMSRAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPF 275

Query: 230 P--NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
           P  N  +W  I+ GY  +  + EA  L  +M +  +  D     ++L+  A    L+ GM
Sbjct: 276 PAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISILAACAESGLLSLGM 335

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
             HS + K  L+++  V +ALLDMY+KCG ++ A  +F  + +K+LV+WN M+ G   +G
Sbjct: 336 RAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKKDLVSWNTMLHGLGVHG 395

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407
              + IELF +++    + PD VTF+ VL +C+H  +  D+  +YF SM K Y + P VE
Sbjct: 396 HGKEAIELFSRMRK-EGIWPDKVTFIAVLCSCNHAGL-IDEGIDYFYSMEKVYDLVPKVE 453

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
           H   ++ L+G+ G +  A ++++ +      V+W ALL A    +++D+A+     ++KL
Sbjct: 454 HYGCLVDLLGRGGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKL 513

Query: 468 EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +      Y +L N+Y +  +W+  + +R+ M+  G+ K +G S +E+E+
Sbjct: 514 DPSDPGNYTLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELED 562


>gi|242066372|ref|XP_002454475.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
 gi|241934306|gb|EES07451.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
          Length = 706

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 158/531 (29%), Positives = 280/531 (52%), Gaps = 17/531 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+    +L+A      +   + +H Y++  GF  + FV  +L+  Y K   +  A ++
Sbjct: 134 PNEFTAAAVLQACGLARDERLGRMVHGYLVAGGFCGDPFVVGSLVNMYAKAGDVVSARRL 193

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            + +P   VVSW ++ISG V +G   + L +FV +    +  +  +  S + AC  +G+ 
Sbjct: 194 VLGLPCRDVVSWTAIISGCVLNGMLEEGLEVFVMMLEDGVLPNNVTMLSVIQACSLMGAS 253

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF-------GEMI-DKDIIS 172
           +L   +H+ +V   LE    + N LI MY K G VE+AI +F       G +  ++D+++
Sbjct: 254 ELFSPVHALVVLLELEHDASVVNSLIMMYAKNGFVEEAIWLFRGFYLKSGNVCSNEDVLA 313

Query: 173 ---WNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGI-AQFGDIEDAIMILSSMP 228
              +   I+ S +NG    A     ++    +IS    + G+ A+F  I+ A  +   M 
Sbjct: 314 AVLYGCTISGSVKNGVGVHAHTI--KIGAFPSISIENSLMGMYARFEQIDAAHFVFEGMK 371

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK--DVPMDEYTFSTMLSGIAGLSALTWG 286
             +  SWN+I++     +RV EA+ LF  + +    +  D  T  ++L   +    L  G
Sbjct: 372 VKDIVSWNTIISCLAKSDRVNEAMELFSVLHAAAGGLAPDFVTVLSILQACSNAGLLHQG 431

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
            ++H  ++K G    + + +AL+ MY+K G+++ A+ +F  +  K+LV+WN+MI  Y  +
Sbjct: 432 QMLHGYIMKSGFVYDVSICNALITMYAKLGRIDFAEMIFERMDIKDLVSWNSMINAYGMH 491

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           GD    + +F QLK      P+++TF++V++ACSH+ +   +  + FESM +D+ I+P++
Sbjct: 492 GDGHLALRVFHQLKDAGTPVPNAITFVSVISACSHSGL-ISEGYKCFESMGRDHSIEPSM 550

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
           +H   ++ L+G+ G    A+  IR++       +W  LL+A     ++D+A  +A E+  
Sbjct: 551 DHYACVVDLLGRSGRFAEAEEFIRDMPVHPNSSIWGPLLAACQLHGNVDLAEKAAKELSA 610

Query: 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           LE +SD   V L N Y S G W  A+ +R  MR  GLRKE G S+++V  V
Sbjct: 611 LEPESDIWRVSLSNTYASAGRWRDAAKIRTEMRRVGLRKETGWSFVDVGGV 661


>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
 gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 152/527 (28%), Positives = 272/527 (51%), Gaps = 41/527 (7%)

Query: 29  ILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ--PSVVSWNSLISGYVQSGKYR 86
           +L+    +NV + T  +        +  A K+F + PQ   S +S NS+I  Y+++ +Y 
Sbjct: 1   MLRHAIETNVQIFTKFLVISASAVGIGYARKLFDQRPQRDDSFLS-NSMIKAYLETRQYP 59

Query: 87  KALNLFVELERSEIYA-DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
            +  L+ +L +   +A D ++FT+   +C     +  G+ +HS+I ++     + ++  +
Sbjct: 60  DSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGV 119

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-PDTISY 204
           +DMY K G +  A   F EM  +  +SW ++I+   R G L+LA     ++P+  D + Y
Sbjct: 120 VDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIY 179

Query: 205 NEVINGIAQFGD-------------------------------IEDAIMILSSMPSPNSS 233
           N +++G  + GD                               I+ A  +  +MP  N  
Sbjct: 180 NAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLV 239

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQ-SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
           SWN+++ GY    +  E + LF EMQ +  +  D+ T  ++L  I+   AL+ G   H  
Sbjct: 240 SWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCF 299

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           V ++ LD  + V +A+LDMYSKCG++E A  +F  +  K + +WNAMI GYA NG+    
Sbjct: 300 VQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAA 359

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412
           ++LF  +  + + +PD +T L V+ AC+H  +  ++  ++F  M ++ G+   +EH   M
Sbjct: 360 LDLF--VTMMIEEKPDEITMLAVITACNHGGL-VEEGRKWFHVM-REMGLNAKIEHYGCM 415

Query: 413 IRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472
           + L+G+ G +  A+ +I  + F   G++  + LSA G   D++ A     + ++LE  +D
Sbjct: 416 VDLLGRAGSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQND 475

Query: 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAA 519
             YV+L NLY +   WD   +++N MR+   +KE GCS IE+  + +
Sbjct: 476 GNYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEINYIVS 522



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 98/196 (50%), Gaps = 2/196 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  +  +L A SD G  +  +  HC++ +      V V TA++  Y K   +  A ++
Sbjct: 272 PDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRI 331

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+  V SWN++I GY  +G  R AL+LFV +   E   D  +  + + AC   G +
Sbjct: 332 FDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEITMLAVITACNHGGLV 390

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
           + G      + +  L   +    C++D+ G+ GS+++A  +   M  + + I  +S ++A
Sbjct: 391 EEGRKWFHVMREMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPNGIILSSFLSA 450

Query: 180 SARNGNLELAFGFLHR 195
             +  ++E A   L +
Sbjct: 451 CGQYKDIERAERILKK 466


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 151/522 (28%), Positives = 264/522 (50%), Gaps = 42/522 (8%)

Query: 35  LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF-V 93
           +SNV+V T+L+  Y K+  ++DA ++F  +PQ +  SW+++++GY       +A +LF +
Sbjct: 44  VSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRL 103

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
            LE        +  T+ L+A      L +G  +H  IVK  L   V + N L+ MY K G
Sbjct: 104 MLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAG 163

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVIN 209
            +  A  VF    +++ I+W+++I   A+NG  + A     ++      P   ++  V+N
Sbjct: 164 CMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLN 223

Query: 210 G-----------------------------------IAQFGDIEDAIMILSSMPSPNSSS 234
                                                A+ G I DA      +   +   
Sbjct: 224 ASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVL 283

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
           W ++++G+V      EAL L+  M  + +   + T ++ L   AG++AL  G  +H+ ++
Sbjct: 284 WTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIV 343

Query: 295 KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
           K GL     V SAL  MYSKCG +E   S+FR +  ++++ WN++I+G+++NG     ++
Sbjct: 344 KYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALD 403

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
           LFE++K +    PD++TF+N+L ACSH  +  D+  EYF  MTKDYG+ P ++H   M+ 
Sbjct: 404 LFEEMK-MEGTIPDNITFINILCACSHMGL-VDRGWEYFSLMTKDYGLTPRLDHYACMVD 461

Query: 415 LMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474
           ++ + G +  A+  I  +       +WR +L A  +  D DV   +   +++L       
Sbjct: 462 ILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDSSA 521

Query: 475 YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           Y++L N+Y S   W+    +R+ MR RG+ K+ GCSW+E+ +
Sbjct: 522 YILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNS 563



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 126/222 (56%), Gaps = 4/222 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P E+    +L ASSDLG     +Q H  ++K GF   ++V +AL+  Y K   +ADA + 
Sbjct: 213 PTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEG 272

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ +  +V W +++SG+VQ+G++ +AL L+  +++  I     +  S L AC  + +L
Sbjct: 273 FDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAAL 332

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H++IVKY L  G  + + L  MY KCG++ED + VF  + D+D+I+WNS+I+  
Sbjct: 333 EPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGF 392

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIE 218
           ++NG    A      +      PD I++  ++   +  G ++
Sbjct: 393 SQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVD 434



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 156/346 (45%), Gaps = 40/346 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  I+K G L  V V  +L+  Y K   +  A  +F    + + ++W+++I+GY Q+
Sbjct: 134 EQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQN 193

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+   A+++F ++  +      ++F   L A   LG+L +G   H  +VK   E  + + 
Sbjct: 194 GEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVK 253

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------ 196
           + L+DMY KCG + DA   F ++ + DI+ W ++++   +NG  E A     R+      
Sbjct: 254 SALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGII 313

Query: 197 PNPDTISYN-EVINGIAQF--------------------------------GDIEDAIMI 223
           P+  TI+       GIA                                  G++ED + +
Sbjct: 314 PSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSV 373

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +P  +  +WNSI++G+        AL LF EM+ +    D  TF  +L   + +  +
Sbjct: 374 FRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLV 433

Query: 284 TWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
             G    S + K  GL   +   + ++D+ S+ G ++ A     S+
Sbjct: 434 DRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESI 479



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 143/327 (43%), Gaps = 42/327 (12%)

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY-SLERGVVIANCLIDMYGKCG 153
           L  S +    +SF +A  A  +  S   G A H+   K  S    V +   L++MY K G
Sbjct: 2   LSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLG 61

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF----LHRLPN----------- 198
            V DA  VF  M  ++  SW++++A  A     E AF      L   P+           
Sbjct: 62  IVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVL 121

Query: 199 -----PDTISYNEVINGI--------------------AQFGDIEDAIMILSSMPSPNSS 233
                P  +   E ++G+                    A+ G +  A  +  S    NS 
Sbjct: 122 SAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSI 181

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           +W++++TGY        A+ +F +M +      E+TF  +L+  + L AL  G   H  +
Sbjct: 182 TWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLM 241

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
           +K G +  I V SAL+DMY+KCG +  A   F  L   ++V W AM++G+ +NG+  + +
Sbjct: 242 VKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEAL 301

Query: 354 ELFEQLKTVRDLQPDSVTFLNVLAACS 380
            L+ ++     + P   T  + L AC+
Sbjct: 302 TLYARMDK-EGIIPSKSTIASGLRACA 327



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 2/181 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  +   LRA + +      +QLH  I+K G      V +AL   Y K  +L D   +
Sbjct: 314 PSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSV 373

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP   V++WNS+ISG+ Q+G    AL+LF E++      D  +F + L AC  +G +
Sbjct: 374 FRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLV 433

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G    S + K Y L   +    C++D+  + G +++A      + ID     W  V+ 
Sbjct: 434 DRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLG 493

Query: 179 A 179
           A
Sbjct: 494 A 494


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 159/508 (31%), Positives = 258/508 (50%), Gaps = 34/508 (6%)

Query: 9    LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
            LL+A + +  +  C  +H  +LK GF S++FVS AL+  Y     L  A K+F E+ +  
Sbjct: 802  LLKACARIS-NVSCTTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERD 860

Query: 69   VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
            +VSWNSLI GY +  +Y + L +F E+  +++  DA +    + AC  LG   +  A+  
Sbjct: 861  LVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIE 920

Query: 129  KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
             I +  +E  V + N LIDMYG+   V+ A  VF  M D+++                  
Sbjct: 921  YIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNM------------------ 962

Query: 189  AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV 248
                         +S+N +I G  + G++  A  +   MP  +  SW S+++ Y    + 
Sbjct: 963  -------------VSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQF 1009

Query: 249  PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
             +A+ LF EM    V  DE T +++LS  A + AL  G  +H  + K  ++A I V +AL
Sbjct: 1010 GKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNAL 1069

Query: 309  LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
            +DMY KCG VE   S+F  + +++ V+W ++I G A NG     + LF  L     ++P 
Sbjct: 1070 IDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLF-SLMLREGVRPT 1128

Query: 369  SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM 428
              TF+ VL AC+H  +  DK  EYFESM + YG+ P ++H   ++ L+ + G + RA   
Sbjct: 1129 HGTFVGVLLACAHAGV-VDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEF 1187

Query: 429  IRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW 488
            I+ +      VVWR LLSAS    +L +A I+  ++++ +  +   Y++  N Y     W
Sbjct: 1188 IKRMPMDPDVVVWRILLSASQVHGNLHLAEIATKKLLETDPSNSGNYILSSNTYAGSNRW 1247

Query: 489  DVASVMRNFMRERGLRKEAGCSWIEVEN 516
            +    MR  M E  + K +  S +E+ +
Sbjct: 1248 EDVIKMRRLMEESNVHKPSASSSVEIND 1275



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 2/191 (1%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
            P+E  +  +L A + +G     + +H YI K    ++++V  AL+  Y K  ++     +
Sbjct: 1026 PDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSV 1085

Query: 61   FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            F E+ +   VSW S+I+G   +G    ALNLF  + R  +     +F   L AC   G +
Sbjct: 1086 FEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVV 1145

Query: 121  QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
              G+     + + Y L   +    C++D+  + G++  A      M +D D++ W  +++
Sbjct: 1146 DKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLS 1205

Query: 179  ASARNGNLELA 189
            AS  +GNL LA
Sbjct: 1206 ASQVHGNLHLA 1216


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 146/532 (27%), Positives = 269/532 (50%), Gaps = 42/532 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH  ++ +G+    F++  L+  Y K   L  A K+F  +PQ ++VSW ++ISG  Q+
Sbjct: 25  KQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQN 84

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            K+ +A+  F  +         ++F+SA+ AC  LGS+++G  +H   +K+ +   + + 
Sbjct: 85  SKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVG 144

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP--- 199
           + L DMY KCG++ DA  VF EM  KD +SW ++I   ++ G  E A     ++ +    
Sbjct: 145 SNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVT 204

Query: 200 ------------------------------------DTISYNEVINGIAQFGDIEDAIMI 223
                                               D    N + +  ++ GD+E A  +
Sbjct: 205 IDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNV 264

Query: 224 LS-SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
                   N  S+  ++ GYV   ++ + L +F E++ + +  +E+TFS+++   A  +A
Sbjct: 265 FGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAA 324

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G  +H+ V+K   D    V+S L+DMY KCG +E A   F  +     + WN++++ 
Sbjct: 325 LEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSV 384

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           + ++G     I+ FE++   R ++P+++TF+++L  CSH  +  ++  +YF SM K YG+
Sbjct: 385 FGQHGLGKDAIKFFERM-VDRGVKPNAITFISLLTGCSHAGL-VEEGLDYFYSMDKTYGV 442

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
            P  EH   +I L+G+ G +  A+  I  + F      W + L A     D ++ +++A 
Sbjct: 443 VPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAE 502

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           +++KLE  +    V+L N+Y +   W+    +R  MR+  ++K  G SW++V
Sbjct: 503 KLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDV 554



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 171/388 (44%), Gaps = 46/388 (11%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
           D  +    +    +   L+ G  +H+ ++         + N L++MY KCG ++ A+ +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 163 GEMIDKDIISWNSVIAASARNGNLELAF----GFLHRLPNPDTISYNEVINGIAQFGDIE 218
             M  ++++SW ++I+  ++N     A     G       P   +++  I   A  G IE
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 219 -----------------------------------DAIMILSSMPSPNSSSWNSILTGYV 243
                                              DA  +   MP  +  SW +++ GY 
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV 303
                 EAL  F +M  ++V +D++   + L     L A  +G  +HS V+K G ++ I 
Sbjct: 184 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIF 243

Query: 304 VASALLDMYSKCGQVEIADSMF--RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
           V +AL DMYSK G +E A ++F   S CR N+V++  +I GY     + K + +F +L+ 
Sbjct: 244 VGNALTDMYSKAGDMESASNVFGIDSECR-NVVSYTCLIDGYVETEQIEKGLSVFVELRR 302

Query: 362 VRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGE 421
            + ++P+  TF +++ AC++          + + M  ++   P V     ++ + G+ G 
Sbjct: 303 -QGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--LVDMYGKCGL 359

Query: 422 VWRAQRMIRELGFGSYGVVWRALLSASG 449
           +  A +   E+G     + W +L+S  G
Sbjct: 360 LEHAIQAFDEIG-DPTEIAWNSLVSVFG 386



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 113/264 (42%), Gaps = 42/264 (15%)

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           D    + ++   A    L  G  +H+ +I  G      + + L++MYSKCG+++ A  +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD-- 383
            ++ ++NLV+W AMI+G ++N   ++ I  F  ++   ++ P    F + + AC+     
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLGSI 122

Query: 384 ----------IPFDKVSEYF--ESMTKDYGIKPTVEHCCSMIRLMGQKGEV-WRAQRMIR 430
                     + F   SE F   ++   Y     +   C +   M  K EV W A  MI 
Sbjct: 123 EMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTA--MID 180

Query: 431 ELGFGSYGVVWRALL------------------SASGACSDLDVARISA---AEVIKLEG 469
             G+   G    ALL                  S  GAC  L   +      + V+KL  
Sbjct: 181 --GYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGF 238

Query: 470 DSD-YVYVMLCNLYTSHGNWDVAS 492
           +SD +V   L ++Y+  G+ + AS
Sbjct: 239 ESDIFVGNALTDMYSKAGDMESAS 262


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 151/522 (28%), Positives = 264/522 (50%), Gaps = 42/522 (8%)

Query: 35  LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF-V 93
           +SNV+V T+L+  Y K+  ++DA ++F  +PQ +  SW+++++GY       +A +LF +
Sbjct: 150 VSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRL 209

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
            LE        +  T+ L+A      L +G  +H  IVK  L   V + N L+ MY K G
Sbjct: 210 MLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAG 269

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVIN 209
            +  A  VF    +++ I+W+++I   A+NG  + A     ++      P   ++  V+N
Sbjct: 270 CMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLN 329

Query: 210 G-----------------------------------IAQFGDIEDAIMILSSMPSPNSSS 234
                                                A+ G I DA      +   +   
Sbjct: 330 ASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVL 389

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
           W ++++G+V      EAL L+  M  + +   + T ++ L   AG++AL  G  +H+ ++
Sbjct: 390 WTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIV 449

Query: 295 KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
           K GL     V SAL  MYSKCG +E   S+FR +  ++++ WN++I+G+++NG     ++
Sbjct: 450 KYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALD 509

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
           LFE++K +    PD++TF+N+L ACSH  +  D+  EYF  MTKDYG+ P ++H   M+ 
Sbjct: 510 LFEEMK-MEGTIPDNITFINILCACSHMGL-VDRGWEYFSLMTKDYGLTPRLDHYACMVD 567

Query: 415 LMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474
           ++ + G +  A+  I  +       +WR +L A  +  D DV   +   +++L       
Sbjct: 568 ILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDSSA 627

Query: 475 YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           Y++L N+Y S   W+    +R+ MR RG+ K+ GCSW+E+ +
Sbjct: 628 YILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNS 669



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 126/222 (56%), Gaps = 4/222 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P E+    +L ASSDLG     +Q H  ++K GF   ++V +AL+  Y K   +ADA + 
Sbjct: 319 PTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEG 378

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ +  +V W +++SG+VQ+G++ +AL L+  +++  I     +  S L AC  + +L
Sbjct: 379 FDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAAL 438

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  +H++IVKY L  G  + + L  MY KCG++ED + VF  + D+D+I+WNS+I+  
Sbjct: 439 EPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGF 498

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIE 218
           ++NG    A      +      PD I++  ++   +  G ++
Sbjct: 499 SQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVD 540



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 184/404 (45%), Gaps = 48/404 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINS--LADAHKMFVEIPQPS--VVSWNSLISG 78
           + LH + LKSG  S+  V+ +L+ FY  +    LA A  +F +IP  +  V SWNSL++ 
Sbjct: 32  EALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVTSWNSLLNP 91

Query: 79  YVQSGKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY-SLE 136
            +   +   AL+ F   L  S +    +SF +A  A  +  S   G A H+   K  S  
Sbjct: 92  -LSGHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSAV 150

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF---- 192
             V +   L++MY K G V DA  VF  M  ++  SW++++A  A     E AF      
Sbjct: 151 SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 210

Query: 193 LHRLPN----------------PDTISYNEVINGI--------------------AQFGD 216
           L   P+                P  +   E ++G+                    A+ G 
Sbjct: 211 LEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGC 270

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           +  A  +  S    NS +W++++TGY        A+ +F +M +      E+TF  +L+ 
Sbjct: 271 MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNA 330

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            + L AL  G   H  ++K G +  I V SAL+DMY+KCG +  A   F  L   ++V W
Sbjct: 331 SSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLW 390

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            AM++G+ +NG+  + + L+ ++     + P   T  + L AC+
Sbjct: 391 TAMVSGHVQNGEHEEALTLYARMDK-EGIIPSKSTIASGLRACA 433



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 156/346 (45%), Gaps = 40/346 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  I+K G L  V V  +L+  Y K   +  A  +F    + + ++W+++I+GY Q+
Sbjct: 240 EQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQN 299

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+   A+++F ++  +      ++F   L A   LG+L +G   H  +VK   E  + + 
Sbjct: 300 GEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVK 359

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------ 196
           + L+DMY KCG + DA   F ++ + DI+ W ++++   +NG  E A     R+      
Sbjct: 360 SALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGII 419

Query: 197 PNPDTISYN-EVINGIAQF--------------------------------GDIEDAIMI 223
           P+  TI+       GIA                                  G++ED + +
Sbjct: 420 PSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSV 479

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +P  +  +WNSI++G+        AL LF EM+ +    D  TF  +L   + +  +
Sbjct: 480 FRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLV 539

Query: 284 TWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
             G    S + K  GL   +   + ++D+ S+ G ++ A     S+
Sbjct: 540 DRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESI 585



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 133/304 (43%), Gaps = 48/304 (15%)

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGS--VEDAIGVFGEMID--KDIISWNSVIA 178
           G A+H+  +K        +AN LI+ Y       +  A  VF ++    +D+ SWNS++ 
Sbjct: 31  GEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVTSWNSLLN 90

Query: 179 ASARNGNLELAFGFLHRL------PNPDTISY---------------------------- 204
             + +  L+    F   L      P+P + +                             
Sbjct: 91  PLSGHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSAV 150

Query: 205 ------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
                   ++N   + G + DA  +   MP  NS SW++++ GY       EA  LF  +
Sbjct: 151 SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLF-RL 209

Query: 259 QSKDVPMD--EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
             ++ P +  E+  + +LS ++    L  G  +H  ++K GL   + V ++L+ MY+K G
Sbjct: 210 MLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAG 269

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            +  A  +F S   +N +TW+AMITGYA+NG+    + +F Q+       P   TF+ VL
Sbjct: 270 CMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAA-GFTPTEFTFVGVL 328

Query: 377 AACS 380
            A S
Sbjct: 329 NASS 332



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 2/181 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  +   LRA + +      +QLH  I+K G      V +AL   Y K  +L D   +
Sbjct: 420 PSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSV 479

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP   V++WNS+ISG+ Q+G    AL+LF E++      D  +F + L AC  +G +
Sbjct: 480 FRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLV 539

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G    S + K Y L   +    C++D+  + G +++A      + ID     W  V+ 
Sbjct: 540 DRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLG 599

Query: 179 A 179
           A
Sbjct: 600 A 600


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 154/555 (27%), Positives = 274/555 (49%), Gaps = 42/555 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N Y     L+A +DL  D    ++    ++ GF  +++V ++++ F  K   LADA K+F
Sbjct: 144 NSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVF 203

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +P+  VV WNS+I GYVQ G + +++ +F+E+    +     +  + L ACGQ G  +
Sbjct: 204 DGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKK 263

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           +GM  HS ++   +   V +   L+DMY   G    A  VF  M  + +ISWN++I+   
Sbjct: 264 VGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYV 323

Query: 182 RNGNLELAFGFLHRLPNP----DTISYNEVINGIAQFGDIED------------------ 219
           +NG +  ++    RL       D+ +   +I G +Q  D+E+                  
Sbjct: 324 QNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLV 383

Query: 220 -----------------AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                            A ++   M   N  +W ++L G        +AL LF +MQ + 
Sbjct: 384 LSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEK 443

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V  +  T  +++   A L +LT G  +H+  I+ G     V+ SAL+DMY+KCG++  A+
Sbjct: 444 VAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAE 503

Query: 323 SMFRS-LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            +F +    K+++  N+MI GY  +G     + ++ ++   R L+P+  TF+++L ACSH
Sbjct: 504 KLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEER-LKPNQTTFVSLLTACSH 562

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           + +  ++    F SM +D+ ++P  +H   ++ L  + G +  A  +++++ F     V 
Sbjct: 563 SGL-VEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVL 621

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALLS      + ++    A  +I L+  +  +YVML N+Y     W+  + +R  MR +
Sbjct: 622 EALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQ 681

Query: 502 GLRKEAGCSWIEVEN 516
           G++K  G S IEV N
Sbjct: 682 GMKKIPGYSLIEVGN 696



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 199/402 (49%), Gaps = 44/402 (10%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           + + +H  I+K+   +  F++  L+  Y  +  L  A  +F +   P     N++I+G++
Sbjct: 62  HVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFL 121

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           ++ ++ +   LF  +   +I  ++Y+   AL AC  L   ++GM I    V+      + 
Sbjct: 122 RNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLY 181

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG--------NLELAFGF 192
           + + +++   K G + DA  VF  M +KD++ WNS+I    + G         LE+  G 
Sbjct: 182 VGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGG 241

Query: 193 LHRLPNP---------------------------------DTISYNEVINGIAQFGDIED 219
           L   P+P                                 D      +++  +  GD   
Sbjct: 242 LR--PSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGS 299

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
           A ++  SM S +  SWN++++GYV    +PE+  LF  +       D  T  +++ G + 
Sbjct: 300 AALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQ 359

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
            S L  G ++HSC+I++ L++ +V+++A++DMYSKCG ++ A  +F  + +KN++TW AM
Sbjct: 360 TSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAM 419

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           + G ++NG     ++LF Q++  + +  +SVT ++++  C+H
Sbjct: 420 LVGLSQNGYAEDALKLFCQMQEEK-VAANSVTLVSLVHCCAH 460


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 158/538 (29%), Positives = 265/538 (49%), Gaps = 41/538 (7%)

Query: 20  TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79
            +  QLH  ++ SG   +  V+  L+  Y K   L DA ++F  +P+  +V+WN +ISGY
Sbjct: 265 NFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGY 324

Query: 80  VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
           VQ+G   +A  LF E+  + +  D+ +F+S L    +  +L+ G  IH  I++  +   V
Sbjct: 325 VQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDV 384

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHR 195
            + + LID+Y KC  VE A  +F +    DI+   ++I+    NG     LE+    L  
Sbjct: 385 FLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQE 444

Query: 196 LPNPDTISYNEVI---------------------NG--------------IAQFGDIEDA 220
               ++++   V+                     NG               A+ G ++ A
Sbjct: 445 RMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLA 504

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
                 +   ++  WNS++T      +  EA+ LF +M       D  + S  LS  A L
Sbjct: 505 HQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANL 564

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
            AL +G  IH+ +++    + +   SAL+DMYSKCG +++A  +F ++  KN V+WN++I
Sbjct: 565 PALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSII 624

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
             Y  +G L   + LF  +     +QPD VTFL +++AC H     D+   YF  MT++ 
Sbjct: 625 AAYGNHGRLKDSLNLFHGMLG-DGIQPDHVTFLAIISACGHAG-QVDEGIHYFRCMTEEL 682

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
           GI   +EH   M+ L G+ G +  A  MI  + F     VW  LL A     ++++A ++
Sbjct: 683 GIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVA 742

Query: 461 AAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVA 518
           +  +  L+  +   YV+L N++ + G W+    +R+ M+ERG++K  GCSWI+V N  
Sbjct: 743 SRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTT 800



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 209/420 (49%), Gaps = 40/420 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++Y   ++++A   L      + +H  I   GF  +VFV ++L+ FY +   + DA  +
Sbjct: 145 PDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYL 204

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P    V WN +++GYV++G +  A  +F+E+ R+E   ++ +F   L+ C     +
Sbjct: 205 FDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMI 264

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H  +V   LE    +AN L+ MY KCG + DA  +F  M   D+++WN +I+  
Sbjct: 265 NFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGY 324

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVI---------------------NGIA--- 212
            +NG ++ A    H + +    PD+I+++  +                     NG++   
Sbjct: 325 VQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDV 384

Query: 213 -----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                      +  D+E A  I       +     ++++GYV       AL +F  +  +
Sbjct: 385 FLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQE 444

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  +  T +++L   AGL+ALT G  +H  ++K G   S  V SA++DMY+KCG++++A
Sbjct: 445 RMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLA 504

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F  +  K+ V WN+MIT  ++NG   + I+LF Q+  +   + D V+    L+AC++
Sbjct: 505 HQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMG-MAGTKYDCVSISAALSACAN 563



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 191/414 (46%), Gaps = 40/414 (9%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65
           L  +L+  +D    +  +Q H  +L +G   N  + T L+G Y    +  DA  +F ++ 
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 66  QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA 125
                 WN +I G+   G++  AL  + ++       D Y+F   + ACG L S+ LG  
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRV 168

Query: 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN 185
           +H KI     E  V + + LI  Y + G + DA  +F  M  KD + WN ++    +NG+
Sbjct: 169 VHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGD 228

Query: 186 LELAFGFLHRL----PNPDTISY-----------------------------------NE 206
            + A G    +     NP+++++                                   N 
Sbjct: 229 WDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANT 288

Query: 207 VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
           ++   A+ G + DA  +   MP  +  +WN +++GYV    + EA  LF EM S  +  D
Sbjct: 289 LLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPD 348

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
             TFS+ L  ++  + L  G  IH  +I+ G+   + + SAL+D+Y KC  VE+A  +F 
Sbjct: 349 SITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFD 408

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
                ++V   AMI+GY  NG     +E+F  L   R ++ +SVT  +VL AC+
Sbjct: 409 QRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQER-MRANSVTLASVLPACA 461



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 153/319 (47%), Gaps = 27/319 (8%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N   L  +L A + L   T  ++LH +ILK+G   + +V +A+M  Y K   L  AH+ F
Sbjct: 449 NSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTF 508

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
           + I     V WNS+I+   Q+GK  +A++LF ++  +    D  S ++AL+AC  L +L 
Sbjct: 509 IGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALH 568

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  IH+ +++ +    +   + LIDMY KCG+++ A  VF  M +K+ +SWNS+IAA  
Sbjct: 569 YGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYG 628

Query: 182 RNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PNS 232
            +G L+ +    H +      PD +++  +I+     G +++ I     M          
Sbjct: 629 NHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARM 688

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
             +  ++  +    R+ EA   FG + S     D               A  WG L+ +C
Sbjct: 689 EHYACMVDLFGRAGRLNEA---FGMINSMPFSPD---------------AGVWGTLLGAC 730

Query: 293 VIKQGLDASIVVASALLDM 311
            +   ++ + V +  L D+
Sbjct: 731 RLHGNVELAEVASRNLFDL 749



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 137/316 (43%), Gaps = 40/316 (12%)

Query: 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
           A    S L  C     L  G   H++++   +    ++   L+ MY  CG+  DA  +F 
Sbjct: 46  APQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFY 105

Query: 164 EMIDKDIISWNSVIAASARNGNLELAFGFLHR------LPNPDTISY------------- 204
           ++       WN +I      G  + A  F  +      LP+  T  Y             
Sbjct: 106 QLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVAL 165

Query: 205 NEVINGIAQF--------------------GDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
             V++   QF                    G I DA  +   MPS +   WN +L GYV 
Sbjct: 166 GRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVK 225

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV 304
                 A  +F EM+  +   +  TF+ +LS  A    + +G  +H  V+  GL+    V
Sbjct: 226 NGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPV 285

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
           A+ LL MY+KCG +  A  +F  + + +LVTWN MI+GY +NG + +   LF ++ + R 
Sbjct: 286 ANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISAR- 344

Query: 365 LQPDSVTFLNVLAACS 380
           ++PDS+TF + L   S
Sbjct: 345 MKPDSITFSSFLPLLS 360


>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
          Length = 545

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 150/504 (29%), Positives = 265/504 (52%), Gaps = 16/504 (3%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKI---NSLADAHKMFVEIPQPSVVSWNSLIS 77
           + +Q+H  +   GFLS+      L+ F   +    ++A A+ +F +IP+P    +N+LI 
Sbjct: 23  HIKQMHAVMALRGFLSDPSELRELL-FASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIR 81

Query: 78  GYVQSGKYRKALNLFVEL----ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY 133
           G   +   R A++L+  +        +  D  +F   L AC  +G+   G+ +H+ +VK 
Sbjct: 82  GAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKA 141

Query: 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL 193
             E    + N LI M+  CG++  A  +F     +D ++W+++I   AR G++  A    
Sbjct: 142 GCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLF 201

Query: 194 HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
              P  D +S+N +I   A+ GD+  A  +   +P  +  SWN +++GYV       AL 
Sbjct: 202 DECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALE 261

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV----IKQGLDASIVVASALL 309
           LF +MQ      D  T  ++LS  A    L  G  +HS +     + G    +V+ +AL+
Sbjct: 262 LFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGF--PVVLGNALI 319

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
           DMY+KCG ++ A  +F S+  K++ TWN+++ G A +G + + I++FE++   + ++PD 
Sbjct: 320 DMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGK-VRPDE 378

Query: 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429
           +TF+ VL ACSH  +  DK  E+F  M   Y ++P ++H   M+ ++G+ G +  A   I
Sbjct: 379 ITFVAVLIACSHGGM-VDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFI 437

Query: 430 RELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD 489
             +      V+WR LLSA     ++++A+ +  +++K   D    YV+L N+Y S G W 
Sbjct: 438 DTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWF 497

Query: 490 VASVMRNFMRERGLRKEAGCSWIE 513
            +  MR  M + G+ KEAG ++++
Sbjct: 498 GSEKMRKLMDDSGVNKEAGQTFVD 521



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 179/395 (45%), Gaps = 29/395 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++     +LRA + +G      Q+H +++K+G  S+ FV  AL+G +    +L  A  +
Sbjct: 110 PDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAAL 169

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +   V+W+++I+G  + G    A +LF E        D  S+   + A  + G +
Sbjct: 170 FDGRAREDAVAWSAMITGCARRGDIGAARDLFDECP----VKDLVSWNVMITAYAKRGDM 225

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI----DKDIISWNSV 176
            L   +  ++     ER VV  N +I  Y +CGS   A+ +F +M       DI++  S+
Sbjct: 226 ALARELFDQVP----ERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSL 281

Query: 177 IAASARNGNLELAFGFLHRLPNP------DTISYNEVINGIAQFGDIEDAIMILSSMPSP 230
           ++A A +G+L++       L +         +  N +I+  A+ G ++ A  +  SM   
Sbjct: 282 LSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDK 341

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML-----SGIAGLSALTW 285
           + S+WNSI+ G      V E++ +F +M    V  DE TF  +L      G+       +
Sbjct: 342 DVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFF 401

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYA 344
            ++ H    K  ++ +I     ++DM  + G ++ A     ++ C  N V W  +++   
Sbjct: 402 NLMQH----KYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACR 457

Query: 345 RNGDLTKVIELFEQLKTVR-DLQPDSVTFLNVLAA 378
            +G++        QL   R D   D V   N+ A+
Sbjct: 458 VHGEIELAKHANRQLLKARNDESGDYVLLSNIYAS 492


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  252 bits (643), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 179/620 (28%), Positives = 296/620 (47%), Gaps = 115/620 (18%)

Query: 1   PNEYVLFHLLRASSDLGWDTYC--QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           P+ + L + L+A  +L   +YC  + LH  I  +GF SNVFV  AL+  Y +  SL DA 
Sbjct: 147 PDHFTLPYALKACGEL--PSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDAS 204

Query: 59  KMFVEIPQP---SVVSWNSLISGYVQSGKYRKALNLFVEL----------ERSEIYADAY 105
            +F EI +     V+SWNS+++ +V+    R AL LF E+          ERS+I     
Sbjct: 205 LVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDII---- 260

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG-- 163
           S  + L AC  L +L     IHS  ++        + N LID Y KCGS+ DA+ VF   
Sbjct: 261 SIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVM 320

Query: 164 ---------------------------------EMIDKDIISWNSVIAASARNGNLELAF 190
                                            E I  D+I+W++VIA  A+ G  + A 
Sbjct: 321 EFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEAL 380

Query: 191 GFLHRL------PNPDTI------------------------------------------ 202
               ++      PN  TI                                          
Sbjct: 381 DAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGE 440

Query: 203 ---SYNEVINGIAQFGDIEDAIMILSSMP--SPNSSSWNSILTGYVNRNRVPEALHLFGE 257
               YN +I+  ++    + A  I  S+P    N  +W  ++ GY       +AL +F E
Sbjct: 441 DLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSE 500

Query: 258 MQSKD--VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASI-VVASALLDMYS 313
           M SK   V  + YT S +L   A L+AL  G  IH+ V +    + S+  VA+ L+DMYS
Sbjct: 501 MISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYS 560

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           KCG V+ A ++F S+ ++N V+W +M++GY  +G   + +++F++++      PD ++FL
Sbjct: 561 KCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKA-GFVPDDISFL 619

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
            +L ACSH+ +  D+   YF+ M +DY +  + EH   +I L+ + G + +A + I+E+ 
Sbjct: 620 VLLYACSHSGM-VDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMP 678

Query: 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
                V+W ALLSA    S++++A  +  +++ ++ ++D  Y ++ N+Y +   W   + 
Sbjct: 679 MEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVAR 738

Query: 494 MRNFMRERGLRKEAGCSWIE 513
           +R  M++ G++K  GCSW++
Sbjct: 739 IRQLMKKSGIKKRPGCSWVQ 758



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 195/446 (43%), Gaps = 98/446 (21%)

Query: 34  FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFV 93
           ++S   + T ++  Y    +  DA  +   +     V WN L+  +++ G   +A+ +  
Sbjct: 79  YVSPKSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSC 138

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
            + R+    D ++   AL ACG+L S   G A+H  I     E  V + N L+ MY +CG
Sbjct: 139 RMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCG 198

Query: 154 SVEDAIGVFGEMIDK---DIISWNSVIAASARNGN----LEL------------------ 188
           S+EDA  VF E+  K   D+ISWNS++AA  +  N    LEL                  
Sbjct: 199 SLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSD 258

Query: 189 ---------AFGFLHRLPN--------------PDTISYNEVINGIAQFGDIEDAIMILS 225
                    A   L  LP                D    N +I+  A+ G + DA+ + +
Sbjct: 259 IISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFN 318

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS-------------- 271
            M   +  SWN+++TGY        A  LF  M+ +++P+D  T+S              
Sbjct: 319 VMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQE 378

Query: 272 ---------------------TMLSGIAGLSALTWGMLIHSCVIKQGL------------ 298
                                ++LS  A L AL+ GM IH+  +K+ L            
Sbjct: 379 ALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGD 438

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCR--KNLVTWNAMITGYARNGDLTKVIELF 356
              ++V +AL+DMYSKC   + A S+F S+ R  +N+VTW  MI GYA+ GD    +++F
Sbjct: 439 GEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIF 498

Query: 357 -EQLKTVRDLQPDSVTFLNVLAACSH 381
            E +     + P++ T   +L AC+H
Sbjct: 499 SEMISKPYAVAPNAYTISCILMACAH 524


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  252 bits (643), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 165/545 (30%), Positives = 283/545 (51%), Gaps = 59/545 (10%)

Query: 24  QLHCYILKSGFLS---NVFVSTALMGFYRKINS----LADAHKMFVEIPQP--SVVSWNS 74
           QLH  +LKSG ++   + F S           +    L+ A ++F   P P  S  S+N 
Sbjct: 81  QLHATLLKSGAMTTSPDSFHSLLEAAALPAPATSSAHLSYAIRLFRLGPHPPRSARSYNI 140

Query: 75  LISGYVQSGKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY 133
           LI  ++++G    AL+LFVE L+ + +  D ++  + + +C ++  L +G  + +    Y
Sbjct: 141 LIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQA----Y 196

Query: 134 SLERGVVI----ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN---- 185
           + +RG ++     N LI MY  CG V  A  +F  +  K +I+WN++IA   +NG+    
Sbjct: 197 AFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEV 256

Query: 186 LELAFGFLHRLPNPDTIS----------------------YNE-------------VING 210
           +E+  G L      D ++                      Y E             +++ 
Sbjct: 257 VEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDM 316

Query: 211 IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
            A+ G+++ A  +   M S +  +W+++++GY   +R  EAL +F EMQ  +V  ++ T 
Sbjct: 317 YAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTM 376

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
            ++LS  A L AL  G  +HS + ++ L  ++++ +AL+D Y+KCG ++ A   F S+  
Sbjct: 377 VSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPV 436

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
           +N  TW A+I G A NG   + +ELF  +    +++P  VTF+ VL ACSH  +  ++  
Sbjct: 437 RNTWTWTALIKGMASNGRSREALELFSSMLEA-NIEPTDVTFIGVLLACSHGCL-VEEGR 494

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450
            +F SMT+DYGI P +EH   M+ L+G+ G +  A + IR +      VVWRALLSA   
Sbjct: 495 RHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTV 554

Query: 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCS 510
             ++++   +  +++ L+      Y++L N Y S G W  A+++R  M+E+G+ K  GCS
Sbjct: 555 HKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCS 614

Query: 511 WIEVE 515
            IE+E
Sbjct: 615 LIELE 619



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 189/419 (45%), Gaps = 66/419 (15%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++ + + +++ S +   +  + +  Y  K GF+ + FV  +L+  Y     +  AH +
Sbjct: 169 PDQHTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVL 228

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    V++WN++I+GYV++G +++ + +F  +       D  +  S   ACG+LG  
Sbjct: 229 FHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDA 288

Query: 121 QLGMAIHSKIVKYSLERGVV----IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
            LG      I +Y+ E+G++    +A  L+DMY KCG ++ A  +F  M  +D+++W+++
Sbjct: 289 NLG----QWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAM 344

Query: 177 IAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIE-------------- 218
           I+   ++     A    + +     NP+ ++   V++  A  G +E              
Sbjct: 345 ISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDL 404

Query: 219 ---------------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
                                DA+    SMP  N+ +W +++ G  +  R  EAL LF  
Sbjct: 405 PLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSS 464

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI-----HSCVIKQ--GLDASIVVASALLD 310
           M   ++   + TF      I  L A + G L+     H   + Q  G+   I     ++D
Sbjct: 465 MLEANIEPTDVTF------IGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVD 518

Query: 311 MYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQ-LKTVRDLQP 367
           +  + G ++ A    R++    N V W A+++       + K +E+ E+ LK +  L P
Sbjct: 519 LLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACT----VHKNVEIGEEALKQIVPLDP 573


>gi|218194084|gb|EEC76511.1| hypothetical protein OsI_14286 [Oryza sativa Indica Group]
          Length = 656

 Score =  252 bits (643), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 152/539 (28%), Positives = 269/539 (49%), Gaps = 60/539 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN++     L A +DLG     +Q+H   +++GF  + ++ + L+  Y +  SL  A ++
Sbjct: 112 PNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEV 171

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +  P VV + SLIS + ++G++  A    +++ +  +  + ++ T+ L AC ++   
Sbjct: 172 FDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV--- 228

Query: 121 QLGMAIHSKIVKYSLERG--VVIANCLIDMY-----------------GKCGSVEDAIGV 161
            LG  IH  ++K    R   V  +  LID Y                 G CGS+     +
Sbjct: 229 -LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNEGVDPNEFALSIVLGACGSIGLGRQL 287

Query: 162 FGEMIDKDIIS----WNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDI 217
               I  D+I+     N++++   R G +E     L+++ NPD +S+   I+   Q G  
Sbjct: 288 HCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFG 347

Query: 218 EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277
           E AI +L                                +M S+    + Y FS++LS  
Sbjct: 348 EKAIALLC-------------------------------QMHSEGFTPNGYAFSSVLSSC 376

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
           A +++L  GM  H   +K G D+ I   +AL++MYSKCGQ+  A   F  +   ++ +WN
Sbjct: 377 ADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWN 436

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397
           ++I G+A++GD  K +E+F ++++   ++PD  TFL VL  C+H+ +  ++   +F  M 
Sbjct: 437 SLIHGHAQHGDANKALEVFSKMRS-NGIKPDDSTFLGVLMGCNHSGM-VEEGELFFRLMI 494

Query: 398 KDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
             Y   P   H   MI ++G+ G    A RMI ++ F    ++W+ LL++     +LD+ 
Sbjct: 495 DQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIG 554

Query: 458 RISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +++A  +++L       YV++ N+Y  HG W+ A  +R  M E G++K+AGCSWIE+ N
Sbjct: 555 KLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINN 613



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 163/336 (48%), Gaps = 23/336 (6%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           K   LADA  +F  +P+ +VV+W S++SG  ++G+   AL +F ++  S +  + ++  +
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
           AL AC  LG+L+ G  +HS  V+        I +CLI+MY +CGS+  A  VF  M   D
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 170 IISWNSVIAASARNGNLELA----FGFLHRLPNPDTISYNEVINGIAQ-FGDIEDAIMIL 224
           ++ + S+I+A  RNG  ELA       L +   P+  +   ++    +  G      +I 
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIK 239

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
                  S   ++ L  + +RN              + V  +E+  S +L G  G  ++ 
Sbjct: 240 KIGLRSQSVYSSTALIDFYSRN--------------EGVDPNEFALSIVL-GACG--SIG 282

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  +H   IK  L   I V++ALL MY + G VE  ++M   +   +LV+W   I+   
Sbjct: 283 LGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANF 342

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           +NG   K I L  Q+ +     P+   F +VL++C+
Sbjct: 343 QNGFGEKAIALLCQMHS-EGFTPNGYAFSSVLSSCA 377



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 100/203 (49%), Gaps = 13/203 (6%)

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
           AA+A NG  E          +PD +   + +N + + G + DA+ +   MP  N  +W S
Sbjct: 35  AAAADNGCAE----------SPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTS 84

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           +++G     R   AL +F +M    V  +++  +  L   A L AL  G  +HS  ++ G
Sbjct: 85  VMSGCTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAG 144

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE-LF 356
                 + S L++MYS+CG +  A  +F  +   ++V + ++I+ + RNG+     E L 
Sbjct: 145 FAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALI 204

Query: 357 EQLKTVRDLQPDSVTFLNVLAAC 379
           + LK  + L+P+  T   +L AC
Sbjct: 205 QMLK--QGLKPNEHTMTTILTAC 225


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 155/553 (28%), Positives = 284/553 (51%), Gaps = 41/553 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N++VL  +L+ +  +        +H    K G   N FV + L+  Y   + ++DA  +F
Sbjct: 161 NQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVF 220

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             I +   V W +++S Y ++     A  +F ++  S    + ++ TS L A   L S+ 
Sbjct: 221 NGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVV 280

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           LG  IH   +K   +    +   L+DMY KCG ++DA   F  +   D+I  + +I+  A
Sbjct: 281 LGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYA 340

Query: 182 RNGNLELAFGFLHR------LPNPDTISY------------------------------- 204
           ++   E AF    R      LPN  ++S                                
Sbjct: 341 QSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLF 400

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +++  A+  D++ ++ I SS+   N  SWN+I+ G+       EAL +F EMQ+  
Sbjct: 401 VGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQ 460

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +P  + T+S++L   A  +++     IH  + K   +   V+ ++L+D Y+KCG +  A 
Sbjct: 461 MPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDAL 520

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F+ L  +++++WNA+I+GYA +G     +ELF+++    +++ + +TF+ +L+ CS T
Sbjct: 521 KVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNK-SNVESNDITFVALLSVCSST 579

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
            +    +S  F+SM  D+GIKP++EH   ++RL+G+ G +  A + I ++      +VWR
Sbjct: 580 GLVNHGLS-LFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWR 638

Query: 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
           ALLS+     ++ + R SA +++++E   +  YV+L N+Y + G+ D  +++R  MR  G
Sbjct: 639 ALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIG 698

Query: 503 LRKEAGCSWIEVE 515
           +RK  G SW+E++
Sbjct: 699 VRKVPGLSWVEIK 711



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 161/320 (50%), Gaps = 27/320 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNEY L  +L+A +++    + +Q+H + +K G  S++FV  ALM FY K N +  + K+
Sbjct: 362 PNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKI 421

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   + VSWN+++ G+ QSG   +AL++F E++ +++     +++S L AC    S+
Sbjct: 422 FSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASI 481

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +    IH  I K +     VI N LID Y KCG + DA+ VF  ++++DIISWN++I+  
Sbjct: 482 RHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGY 541

Query: 181 ARNGNLELAFGFLHRLPNPDT----ISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A +G    A     R+   +     I++  +++  +  G +   + +  SM       P+
Sbjct: 542 ALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPS 601

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  I+       R+ +AL   G     D+P             +  SA+ W  L+ S
Sbjct: 602 MEHYTCIVRLLGRAGRLNDALQFIG-----DIP-------------SAPSAMVWRALLSS 643

Query: 292 CVIKQGLDASIVVASALLDM 311
           C+I + +      A  +L++
Sbjct: 644 CIIHKNVALGRFSAEKILEI 663



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 190/401 (47%), Gaps = 42/401 (10%)

Query: 23  QQLHCYILKSGFLS--NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           + +H ++++ G +   ++F +  L+  Y K+  LA A ++F  +P+ ++VS+ +L+  + 
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHA 138

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           Q G +  A  LF  L       + +  T+ L     + +  L   +HS   K   +    
Sbjct: 139 QRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAF 198

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
           + + LID Y  C  V DA  VF  ++ KD + W ++++  + N   E AF    ++    
Sbjct: 199 VGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSG 258

Query: 197 --PNP---------------------------DTISYNE------VINGIAQFGDIEDAI 221
             PNP                            T++  E      +++  A+ GDI+DA 
Sbjct: 259 CKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDAR 318

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           +    +P  +    + +++ Y   N+  +A  LF  +    V  +EY+ S++L     + 
Sbjct: 319 LAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMV 378

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L +G  IH+  IK G ++ + V +AL+D Y+KC  ++ +  +F SL   N V+WN ++ 
Sbjct: 379 QLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVV 438

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           G++++G   + + +F +++  + +    VT+ +VL AC+ T
Sbjct: 439 GFSQSGLGEEALSVFCEMQAAQ-MPCTQVTYSSVLRACAST 478



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 162/361 (44%), Gaps = 40/361 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + L  +L+A+  L      + +H   +K+   +   V  AL+  Y K   + DA   
Sbjct: 261 PNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLA 320

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP   V+  + +IS Y QS +  +A  LF+ L RS +  + YS +S L AC  +  L
Sbjct: 321 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQL 380

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH+  +K   E  + + N L+D Y KC  ++ ++ +F  + D + +SWN+++   
Sbjct: 381 DFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGF 440

Query: 181 ARNGNLELAFGFL-----HRLP----------------------------------NPDT 201
           +++G  E A          ++P                                  N DT
Sbjct: 441 SQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDT 500

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           +  N +I+  A+ G I DA+ +   +   +  SWN+I++GY    +  +AL LF  M   
Sbjct: 501 VIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKS 560

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +V  ++ TF  +LS  +    +  G+ L  S  I  G+  S+   + ++ +  + G++  
Sbjct: 561 NVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLND 620

Query: 321 A 321
           A
Sbjct: 621 A 621


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 153/499 (30%), Positives = 257/499 (51%), Gaps = 42/499 (8%)

Query: 23  QQLHCYILKSGFL-SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           + +HC   K GF+  +V    AL+  Y     L DA K+F E+    VVSW +LI GY +
Sbjct: 150 EAIHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYAR 209

Query: 82  SGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
            G   +A  +F  +  +E ++ +  +  +A +A GQ+G L LG  +H  IV+      V 
Sbjct: 210 GGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVN 269

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           + N L+DM+GKCG V  A  VF  M  KD+ SW S+++A                     
Sbjct: 270 LENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSA--------------------- 308

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                      A+ GD+E+A  +   +P+ N  SW+ ++  Y + N   EA+ +F +M +
Sbjct: 309 ----------YAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIA 358

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
             V   + T  ++LS  A L +L  G  L  + ++   ++ +  +++A +DM++KCG V 
Sbjct: 359 AGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVG 418

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F ++  KN+V+WN MI  +  +G   + + LF++ K    + PD  T++ VL+AC
Sbjct: 419 AASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKG-NGILPDEATYIGVLSAC 477

Query: 380 SHTDIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
           SH  +    VSE   +F+ M   YGI+P  EH   MI L+G+ G +  A  + R +  G+
Sbjct: 478 SHGGL----VSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGA 533

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
               W ALL+A     ++++ + +A ++  L+     +YV++  +Y S   W    ++R 
Sbjct: 534 DEAGWGALLNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRT 593

Query: 497 FMRERGLRKEAGCSWIEVE 515
            MR+R ++K  GCS IEV+
Sbjct: 594 VMRDRRVKKNPGCSSIEVD 612



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 157/391 (40%), Gaps = 72/391 (18%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  L     A+  +G     + +H  I++SG   +V +  AL+  + K   +A A ++
Sbjct: 231 PNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEV 290

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA-----DAYS--------- 106
           F  +P   V SW S++S Y + G    A  LF E+    + +      AYS         
Sbjct: 291 FDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAI 350

Query: 107 -----------------FTSALAACGQLGSLQLGMAIH-SKIVKYSLERGVVIANCLIDM 148
                              S L+AC QL SL +G  ++ + IV + +E    ++N  IDM
Sbjct: 351 RIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDM 410

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISY 204
           + KCG V  A  +F  M DK+++SWN++I A   +G  E A             PD  +Y
Sbjct: 411 FAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATY 470

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR-NRVPEALHLFGEMQSKDV 263
             V++  +  G + +       M          I+ G   R       + L G+     V
Sbjct: 471 IGVLSACSHGGLVSEGRCHFKEM---------KIVYGIEPRAEHYACMIDLLGK-----V 516

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-------------QGLDAS----IVVAS 306
            + +  F    S   G     WG L+++C +               GLD S     V+ S
Sbjct: 517 GLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMS 576

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
            +    SK GQV+    M R++ R   V  N
Sbjct: 577 QIYASKSKWGQVK----MLRTVMRDRRVKKN 603


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 153/499 (30%), Positives = 257/499 (51%), Gaps = 42/499 (8%)

Query: 23  QQLHCYILKSGFL-SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           + +HC   K GF+  +V    AL+  Y     L DA K+F E+    VVSW +LI GY +
Sbjct: 150 EAIHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYAR 209

Query: 82  SGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
            G   +A  +F  +  +E ++ +  +  +A +A GQ+G L LG  +H  IV+      V 
Sbjct: 210 GGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVN 269

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           + N L+DM+GKCG V  A  VF  M  KD+ SW S+++A                     
Sbjct: 270 LENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSA--------------------- 308

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                      A+ GD+E+A  +   +P+ N  SW+ ++  Y + N   EA+ +F +M +
Sbjct: 309 ----------YAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIA 358

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
             V   + T  ++LS  A L +L  G  L  + ++   ++ +  +++A +DM++KCG V 
Sbjct: 359 AGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVG 418

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F ++  KN+V+WN MI  +  +G   + + LF++ K    + PD  T++ VL+AC
Sbjct: 419 AASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKG-NGILPDEATYIGVLSAC 477

Query: 380 SHTDIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
           SH  +    VSE   +F+ M   YGI+P  EH   MI L+G+ G +  A  + R +  G+
Sbjct: 478 SHGGL----VSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGA 533

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
               W ALL+A     ++++ + +A ++  L+     +YV++  +Y S   W    ++R 
Sbjct: 534 DEAGWGALLNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRT 593

Query: 497 FMRERGLRKEAGCSWIEVE 515
            MR+R ++K  GCS IEV+
Sbjct: 594 VMRDRRVKKNPGCSSIEVD 612



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 157/391 (40%), Gaps = 72/391 (18%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  L     A+  +G     + +H  I++SG   +V +  AL+  + K   +A A ++
Sbjct: 231 PNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEV 290

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA-----DAYS--------- 106
           F  +P   V SW S++S Y + G    A  LF E+    + +      AYS         
Sbjct: 291 FDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAI 350

Query: 107 -----------------FTSALAACGQLGSLQLGMAIH-SKIVKYSLERGVVIANCLIDM 148
                              S L+AC QL SL +G  ++ + IV + +E    ++N  IDM
Sbjct: 351 RIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDM 410

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISY 204
           + KCG V  A  +F  M DK+++SWN++I A   +G  E A             PD  +Y
Sbjct: 411 FAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATY 470

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR-NRVPEALHLFGEMQSKDV 263
             V++  +  G + +       M          I+ G   R       + L G+     V
Sbjct: 471 IGVLSACSHGGLVSEGRCHFKEM---------KIVYGIEPRAEHYACMIDLLGK-----V 516

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-------------QGLDAS----IVVAS 306
            + +  F    S   G     WG L+++C +               GLD S     V+ S
Sbjct: 517 GLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMS 576

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
            +    SK GQV+    M R++ R   V  N
Sbjct: 577 QIYASKSKWGQVK----MLRTVMRDRRVKKN 603


>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 548

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 146/500 (29%), Positives = 263/500 (52%), Gaps = 10/500 (2%)

Query: 24  QLHCYILKSGFLSNVFVSTALM--GFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           Q+H +++ +G +SN+ V   L+         +L  AHK+F EIP+P V   N ++ G  Q
Sbjct: 30  QIHAFMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFEEIPKPDVSICNHVLRGSAQ 89

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           S K  K + L+ E+E+  +  D Y+FT  L AC +L     G AIH K+V++       +
Sbjct: 90  SLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAIHGKVVRHGFLLNEYV 149

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
            N LI  +  CG +  A  +F +      ++W+S+ +  A+ G ++ A      +P+ D 
Sbjct: 150 KNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPDKDQ 209

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           +++N +I G  +  +++ A  +       +  +WN++++GYVN     EAL +F EM+  
Sbjct: 210 VAWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALSIFKEMRDA 269

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVAS----ALLDMYSKCG 316
               D  T  ++LS  A L  L  G  +H  +++   + +SI V +    AL+DMY+KCG
Sbjct: 270 GEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCG 329

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            ++ A  +FR +  ++L TWN +I G A +      +E+FE+++ ++ + P+ VTF+ V+
Sbjct: 330 SIDRAIEVFRGMKDRDLSTWNTLIVGLALH-HAEGSVEMFEEMQRLK-VWPNEVTFIGVI 387

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
            ACSH+    D+  +YF  M   Y I+P ++H   M+ ++G+ G +  A   +  +    
Sbjct: 388 LACSHSG-RVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGLLEEAFMFVESMKIEP 446

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
             +VWR LL A     ++++ + +  +++ +  D    YV+L N+Y S G WD    +R 
Sbjct: 447 NAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRK 506

Query: 497 FMRERGLRKEAGCSWIEVEN 516
              +  ++K  G S IE ++
Sbjct: 507 MFDDTRVKKPTGISLIEEDD 526



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 183/414 (44%), Gaps = 58/414 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A S L W +    +H  +++ GFL N +V  AL+ F+     L  A ++
Sbjct: 110 PDRYTFTFVLKACSKLEWRSNGFAIHGKVVRHGFLLNEYVKNALILFHANCGDLGIASEL 169

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +  +   V+W+S+ SGY + GK  +A+ LF E+   +  A     T  L  C ++ S 
Sbjct: 170 FDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPDKDQVAWNVMITGCL-KCREMDSA 228

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID----KDIISWNSV 176
           +       ++     E+ VV  N +I  Y  CG  ++A+ +F EM D     D+++  S+
Sbjct: 229 R-------ELFDRFTEKDVVTWNAMISGYVNCGYPKEALSIFKEMRDAGEHPDVVTILSL 281

Query: 177 IAASARNGNLELAFGFLHRLPNPDTIS---------YNEVINGIAQFGDIEDAIMILSSM 227
           ++A A  G+LE        +    ++S         +N +I+  A+ G I+ AI +   M
Sbjct: 282 LSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGM 341

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
              + S+WN+++ G +  +    ++ +F EMQ   V  +E TF                 
Sbjct: 342 KDRDLSTWNTLIVG-LALHHAEGSVEMFEEMQRLKVWPNEVTFIG--------------- 385

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
           +I +C     +D      S + DMY+                  N+  +  M+    R G
Sbjct: 386 VILACSHSGRVDEGRKYFSLMRDMYN---------------IEPNIKHYGCMVDMLGRAG 430

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS-HTDIPFDK-VSEYFESMTKD 399
            L +     E +K    ++P+++ +  +L AC  + ++   K  +E   SM KD
Sbjct: 431 LLEEAFMFVESMK----IEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKD 480


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 146/477 (30%), Positives = 253/477 (53%), Gaps = 20/477 (4%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A ++F ++    V+SWNS+ISGYV +G   + L ++ ++    I  D  +  S L  C  
Sbjct: 204 ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
            G+L LG A+HS  +K S ER +  +N L+DMY KCG ++ A+ VF +M +++++SW S+
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 177 IAASARNGNLELAFGFLHRLPNP----DTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           IA   R+G  + A   L ++       D ++   +++  A+ G +++   +   + + N 
Sbjct: 324 IAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 383

Query: 233 SS----WNSILTGYVNRNRVPEALHLFGEMQSKDV----------PMDEYTFSTMLSGIA 278
           +S     N+++  Y     +  A  +F  M  KD+            D  T + +L   A
Sbjct: 384 ASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACA 443

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            LSAL  G  IH  +++ G  +   VA+AL+D+Y KCG + +A  +F  +  K+LV+W  
Sbjct: 444 SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 503

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           MI GY  +G   + I  F +++    ++PD V+F+++L ACSH+ +  ++   +F  M  
Sbjct: 504 MIAGYGMHGYGNEAIATFNEMRDA-GIEPDEVSFISILYACSHSGL-LEQGWRFFYIMKN 561

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           D+ I+P +EH   M+ L+ + G + +A + I  L       +W ALL       D+++A 
Sbjct: 562 DFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAE 621

Query: 459 ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
             A  V +LE ++   YV+L N+Y      +    MR  + ++GLRK  GCSWIE++
Sbjct: 622 KVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIK 678



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 177/379 (46%), Gaps = 31/379 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H   +KS F   +  S  L+  Y K   L  A ++F ++ + +VVSW S+I+GY + 
Sbjct: 271 KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G    A+ L  ++E+  +  D  + TS L AC + GSL  G  +H  I   ++   + + 
Sbjct: 331 GWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVC 390

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA------------------SARNG 184
           N L+DMY KCGS+E A  VF  M+ KDIISWN+++                    SA   
Sbjct: 391 NALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALER 450

Query: 185 NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
             E+    L    + D    N +++   + G +  A ++   +PS +  SW  ++ GY  
Sbjct: 451 GKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGM 510

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQ--GLDA 300
                EA+  F EM+   +  DE +F ++L     +GL    W       ++K    ++ 
Sbjct: 511 HGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFY---IMKNDFNIEP 567

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            +   + ++D+ S+ G +  A     +L    +   W A++ G     D    IEL E++
Sbjct: 568 KLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHD----IELAEKV 623

Query: 360 -KTVRDLQPDSVTFLNVLA 377
            + V +L+P++  +  +LA
Sbjct: 624 AERVFELEPENTGYYVLLA 642



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 171/386 (44%), Gaps = 30/386 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYI----LKSGFLSNVFVSTALMGFYRKINSLAD 56
           PN  + F  L  + +   + +  Q  C+I    LK+ F S +F S   +          D
Sbjct: 6   PN--LCFSPLTLNQNRKENFFSSQNGCFIHKPSLKTTFFSPIFRSCIPVRISATPTRTID 63

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
                       V  +N+ I  + Q G    A+ L    ++SE+    Y   S L  C  
Sbjct: 64  HQ----------VTDYNAKILHFCQLGDLENAMELVCMCQKSELETKTYG--SVLQLCAG 111

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           L SL  G  +HS I   S+     +   L+  Y  CG +++   VF  M  K++  WN +
Sbjct: 112 LKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFM 171

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
           ++  A+ G+ + +            I   + I G       E A  +   +   +  SWN
Sbjct: 172 VSEYAKIGDFKESICLF-------KIMVEKGIEGKRP----ESASELFDKLCDRDVISWN 220

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           S+++GYV+       L ++ +M    + +D  T  ++L G A    L+ G  +HS  IK 
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 297 GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
             +  I  ++ LLDMYSKCG ++ A  +F  +  +N+V+W +MI GY R+G     I L 
Sbjct: 281 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILL 340

Query: 357 EQLKTVRDLQPDSVTFLNVLAACSHT 382
           +Q++    ++ D V   ++L AC+ +
Sbjct: 341 QQMEK-EGVKLDVVAITSILHACARS 365



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 35/223 (15%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  +L A + L      +++H YIL++G+ S+  V+ AL+  Y K   L  A  +
Sbjct: 430 PDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLL 489

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP   +VSW  +I+GY   G   +A+  F E+  + I  D  SF S L AC   G L
Sbjct: 490 FDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 549

Query: 121 QLGMAIHSKIVK--YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           + G      I+K  +++E  +    C++D+                              
Sbjct: 550 EQGWRFFY-IMKNDFNIEPKLEHYACMVDLL----------------------------- 579

Query: 179 ASARNGNLELAFGFLHRLP-NPDTISYNEVINGIAQFGDIEDA 220
             +R GNL  A+ F+  LP  PD   +  ++ G   + DIE A
Sbjct: 580 --SRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELA 620


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 176/618 (28%), Positives = 293/618 (47%), Gaps = 111/618 (17%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + L + L+A  +L         H  I  +GF SNVFV  AL+  Y +  SL DA  +
Sbjct: 147 PDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLV 206

Query: 61  FVEIPQP---SVVSWNSLISGYVQSGKYRKALNLFVEL----------ERSEIYADAYSF 107
           F EI +     V+SWNS+++ +V+    R AL+LF E+          ERS+I     S 
Sbjct: 207 FDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDII----SI 262

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG---- 163
            + L AC  L +L     IHS  ++        + N LID Y KCGS++DA+ VF     
Sbjct: 263 VNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEF 322

Query: 164 -------------------------------EMIDKDIISWNSVIAASARNGNLELAFGF 192
                                          E I  D+I+W++VIA  A+ G  + A   
Sbjct: 323 KDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDT 382

Query: 193 LHRL------PNPDTI-------------------------------------------- 202
             ++      PN  TI                                            
Sbjct: 383 FQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDL 442

Query: 203 -SYNEVINGIAQFGDIEDAIMILSSMP--SPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
             +N +I+  ++    + A  I +S+P    N  +W  ++ GY       +AL LF EM 
Sbjct: 443 VVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMI 502

Query: 260 SKD--VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV--VASALLDMYSKC 315
           SK   V  + YT S +L   A LS+L  G  IH+ V +     S V  VA+ L+DMYSKC
Sbjct: 503 SKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKC 562

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G V+ A ++F S+ ++N V+W +M++GY  +G   + +++F++++      PD ++FL +
Sbjct: 563 GDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKA-GFVPDDISFLVL 621

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L ACSH+ +  D+  +YF+ M  DYG+  + +H   +I L+ + G + +A + I+E+   
Sbjct: 622 LYACSHSGM-VDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPME 680

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
               +W ALLSA    S++++A  +  +++ ++ ++D  Y ++ N+Y +   W   + +R
Sbjct: 681 PSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIR 740

Query: 496 NFMRERGLRKEAGCSWIE 513
             M++ G++K  GCSW++
Sbjct: 741 QLMKKSGIKKRPGCSWVQ 758



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 196/446 (43%), Gaps = 98/446 (21%)

Query: 34  FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFV 93
           ++S   + T ++  Y    + +DA  +   +     V WN L+  +++ G+  +A+ +  
Sbjct: 79  YVSPKSLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSC 138

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
            + R+    D ++   AL ACG+L S + G A H  I     E  V + N L+ MY + G
Sbjct: 139 RMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSG 198

Query: 154 SVEDAIGVFGEMIDK---DIISWNSVIAASARNGNLELAFGF------------------ 192
           S+EDA  VF E+  K   D+ISWNS++AA  +  N   A                     
Sbjct: 199 SLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSD 258

Query: 193 -------------LHRLPNPDTI-SY-------------NEVINGIAQFGDIEDAIMILS 225
                        L  LP    I SY             N +I+  A+ G ++DA+ + +
Sbjct: 259 IISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFN 318

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS-------------- 271
            M   +  SWN+++TGY    +   A  LF  M+ +++P+D  T+S              
Sbjct: 319 VMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQE 378

Query: 272 ---------------------TMLSGIAGLSALTWGMLIHSCVIKQGL------------ 298
                                ++LS  A L AL+ GM  H+  +K+ L            
Sbjct: 379 ALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGD 438

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCR--KNLVTWNAMITGYARNGDLTKVIELF 356
              +VV +AL+DMYSKC   + A ++F S+ R  +N+VTW  MI GYA+ GD    ++LF
Sbjct: 439 GEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLF 498

Query: 357 -EQLKTVRDLQPDSVTFLNVLAACSH 381
            E +     + P++ T   +L AC+H
Sbjct: 499 SEMISKPYAVAPNAYTISCILMACAH 524


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 165/530 (31%), Positives = 271/530 (51%), Gaps = 61/530 (11%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NVF   A++  Y K +    AH++F +IP+P +VS+N+LIS Y   G+   AL LF  + 
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 97  RSEIYADAYSFTSALAAC----GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC 152
              +  D ++ ++ + AC    G +G L      HS  V    +  V + N L+  YGK 
Sbjct: 133 EMGLDMDGFTLSAVITACCDDVGLIGQL------HSVAVSSGFDSYVSVNNALLTYYGKN 186

Query: 153 GSVEDAIGVFGEMID-KDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEV 207
           G ++DA  VF  M   +D +SWNS+I A  ++     A G    +     N D  +   V
Sbjct: 187 GDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASV 246

Query: 208 I---------NGIAQF---------------------------GDIEDAIMILSSMPSPN 231
           +         +G  QF                           G + D   +   +  P+
Sbjct: 247 LTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPD 306

Query: 232 SSSWNSILTGYV-NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
              WN++++GY  N   + +AL  F +MQ      ++ +F  ++S  + LS+ + G  IH
Sbjct: 307 LVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIH 366

Query: 291 SCVIKQGLDAS-IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           S  +K  + ++ I V +AL+ MYSKCG ++ A  +F  +   N V+ N+MI GYA++G  
Sbjct: 367 SLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIE 426

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE---YFESMTKDYGIKPTV 406
            + + LF Q    R + P S+TF++VL+AC+HT     +V E   YF  M + + I+P  
Sbjct: 427 MESLHLF-QWMLERQIAPTSITFISVLSACAHTG----RVEEGWNYFNMMKEKFNIEPEA 481

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
           EH   MI L+G+ G++  A+ +I  + F    + W +LL A     ++++A  +A +V++
Sbjct: 482 EHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQ 541

Query: 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           LE  +   YV+L N+Y S G W+  + +R FMR+RG++K+ GCSWIEV+ 
Sbjct: 542 LEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKK 591



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 143/300 (47%), Gaps = 30/300 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKI-NSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q H  ++K+GF  N  V + L+  Y K    ++D  K+F EI +P +V WN+++SGY Q+
Sbjct: 261 QFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQN 320

Query: 83  GKY-RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG-VV 140
            ++   AL  F +++      +  SF   ++AC  L S   G  IHS  +K  +    + 
Sbjct: 321 EEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRIS 380

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRL 196
           + N LI MY KCG+++DA  +F  M + + +S NS+IA  A++G    +L L    L R 
Sbjct: 381 VDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQ 440

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEA 251
             P +I++  V++  A  G +E+     + M       P +  ++ ++       ++ EA
Sbjct: 441 IAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEA 500

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
            +L   M     P +               ++ W  L+ +C     ++ ++  A+ +L +
Sbjct: 501 ENLIARM-----PFNP-------------GSIGWASLLGACRTHGNIELAVKAANQVLQL 542



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 103/192 (53%), Gaps = 3/192 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSN-VFVSTALMGFYRKINSLADAHK 59
           PN+     ++ A S+L   +  +Q+H   LKS   SN + V  AL+  Y K  +L DA +
Sbjct: 341 PNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARR 400

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  + + + VS NS+I+GY Q G   ++L+LF  +   +I   + +F S L+AC   G 
Sbjct: 401 LFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGR 460

Query: 120 LQLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
           ++ G    + +  K+++E      +C+ID+ G+ G + +A  +   M  +   I W S++
Sbjct: 461 VEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLL 520

Query: 178 AASARNGNLELA 189
            A   +GN+ELA
Sbjct: 521 GACRTHGNIELA 532



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 118/273 (43%), Gaps = 35/273 (12%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
           F   L  C     L  G ++HS  +K  +      +N  I +Y KCG +  A   F ++ 
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
           D                               P+  S+N +I   A+      A  +   
Sbjct: 71  D-------------------------------PNVFSFNAIIAAYAKESRPLIAHQLFDQ 99

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           +P P+  S+N++++ Y +      AL LF  M+   + MD +T S +++       L  G
Sbjct: 100 IPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGLI-G 158

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR-KNLVTWNAMITGYAR 345
            L HS  +  G D+ + V +ALL  Y K G ++ A  +F  +   ++ V+WN+MI  Y +
Sbjct: 159 QL-HSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQ 217

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           + + +K + LF+++   R L  D  T  +VL A
Sbjct: 218 HQEGSKALGLFQEM-VRRGLNVDMFTLASVLTA 249



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 18/195 (9%)

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           F  +L        L+ G  +HS  IK  +  S   ++  + +YSKCG++  A   F+ + 
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV---TFLNVLAACSHTDIPF 386
             N+ ++NA+I  YA+        +LF+Q+      +PD V   T ++  A C  T  P 
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIP-----EPDLVSYNTLISAYADCGET-APA 124

Query: 387 DKVSEYFESMTKD---YGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
             +      M  D   + +   +  CC  + L+GQ   V  +       GF SY  V  A
Sbjct: 125 LGLFSGMREMGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSS------GFDSYVSVNNA 178

Query: 444 LLSASGACSDLDVAR 458
           LL+  G   DLD A+
Sbjct: 179 LLTYYGKNGDLDDAK 193


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 171/571 (29%), Positives = 286/571 (50%), Gaps = 58/571 (10%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQL----HCYILKSGFLS--NVFVSTALMGFYRKINSLA 55
             + L  +LRA S L       +L    H + LK+G L     F   AL+  Y ++  +A
Sbjct: 163 TSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVA 222

Query: 56  DAHKMFV-EIP-QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
           DA ++F    P +  VV+WN+++S  VQSG + +A+    ++    +  D  +F SAL A
Sbjct: 223 DAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPA 282

Query: 114 CGQLGSLQLGMAIHSKIVKY-SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID--KDI 170
           C +L  L +G  +H+ ++K   L     +A+ L+DMY     V  A  VF  + D  K +
Sbjct: 283 CSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQL 342

Query: 171 ISWNSVIAASARNGNLELAFGFLHRL-------PNPDTIS-------------------- 203
             WN++I   A+ G  E A     R+       P   T++                    
Sbjct: 343 GMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHG 402

Query: 204 -------------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE 250
                         N +++  A+ G  + A  I + +  P+  SWN+++TG V +  V +
Sbjct: 403 YVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVAD 462

Query: 251 ALHLFGEMQSKD----VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
           A  L  EMQ  +    VP +  T  T+L G A L+A   G  IH   ++  LD  + V S
Sbjct: 463 AFQLAREMQQLEEGGVVP-NAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGS 521

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
           AL+DMY+KCG + ++ ++F  L R+N +TWN +I  Y  +G   +   LF+++    + +
Sbjct: 522 ALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEAR 581

Query: 367 PDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426
           P+ VTF+  LAACSH+ +  D+  + F +M +D+G++PT +    ++ ++G+ G +  A 
Sbjct: 582 PNEVTFMAALAACSHSGM-VDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAY 640

Query: 427 RMIRELGFGSYGV-VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485
            M+  +  G   V  W  +L A     ++ +  I+   +++LE +    YV+LCN+Y++ 
Sbjct: 641 AMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAA 700

Query: 486 GNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           G W  A+ +R+ MR RG+ KE GCSWIEV+ 
Sbjct: 701 GQWTRAAEVRSRMRRRGVAKEPGCSWIEVDG 731



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 144/339 (42%), Gaps = 62/339 (18%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL--ERGVVIANCLIDMYGKCGSVEDAIG 160
           D  +   A+ +   L   +   AIH+  ++  L       +AN L+  Y +CG +  A+ 
Sbjct: 58  DHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALE 117

Query: 161 VFGEMID--KDIISWNSVI----------------------------------------- 177
           VFG + D   D +S+NS+I                                         
Sbjct: 118 VFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHL 177

Query: 178 ---AASARNGNLELAF----GFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSP 230
              AA+ R G    AF    G LH        ++N +++  A+ G + DA  + +   +P
Sbjct: 178 PAAAAAVRLGREAHAFALKNGLLH---GHQRFAFNALLSMYARLGLVADAQRLFAG-ATP 233

Query: 231 NSS---SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
                 +WN++++  V      EA+    +M +  V  D  TF++ L   + L  L  G 
Sbjct: 234 GRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGR 293

Query: 288 LIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSL--CRKNLVTWNAMITGYA 344
            +H+ VIK   L A+  VASAL+DMY+   QV  A  +F  +    K L  WNAMI GYA
Sbjct: 294 EMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYA 353

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           + G   + + LF +++      P   T  +VL AC+ ++
Sbjct: 354 QAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSE 392



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 96/192 (50%), Gaps = 4/192 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  LL   + L      +++H Y ++    ++V V +AL+  Y K   LA +  +
Sbjct: 480 PNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAV 539

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS-EIYADAYSFTSALAACGQLGS 119
           F  +P+ + ++WN LI  Y   G   +A  LF  +  S E   +  +F +ALAAC   G 
Sbjct: 540 FDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGM 599

Query: 120 LQLGMAI-HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI--DKDIISWNSV 176
           +  G+ + H+    + +E    I  C++D+ G+ G +++A  +   M   ++ + +W+++
Sbjct: 600 VDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTM 659

Query: 177 IAASARNGNLEL 188
           + A   + N+ L
Sbjct: 660 LGACRLHRNVHL 671



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 22/242 (9%)

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           +D  S  ++ AA+ R G        LHR P+P     N ++   A+ G +  A+ +  S+
Sbjct: 73  RDARSARAIHAAALRRG-------LLHR-PSPAVA--NALLTAYARCGRLAAALEVFGSI 122

Query: 228 P--SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL----S 281
              + ++ S+NS+++      R   AL     M +   P+  +T  ++L  ++ L    +
Sbjct: 123 SDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAA 182

Query: 282 ALTWGMLIHSCVIKQGL--DASIVVASALLDMYSKCGQVEIADSMFRSLC--RKNLVTWN 337
           A+  G   H+  +K GL         +ALL MY++ G V  A  +F      R ++VTWN
Sbjct: 183 AVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWN 242

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397
            M++   ++G   + ++    +  +  ++PD VTF + L ACS  ++  D   E    + 
Sbjct: 243 TMVSVLVQSGMFDEAVQTLYDMVAL-GVRPDGVTFASALPACSRLEL-LDVGREMHAYVI 300

Query: 398 KD 399
           KD
Sbjct: 301 KD 302


>gi|302782902|ref|XP_002973224.1| hypothetical protein SELMODRAFT_98955 [Selaginella moellendorffii]
 gi|300158977|gb|EFJ25598.1| hypothetical protein SELMODRAFT_98955 [Selaginella moellendorffii]
          Length = 546

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 145/536 (27%), Positives = 271/536 (50%), Gaps = 39/536 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      +L A S+LG     +++H  ++  G+ ++  VSTA++G Y K   L DA K+
Sbjct: 8   PNSVTFLWILGACSNLGDVETGRKIHARMVFLGWDTDTVVSTAILGMYSKCEKLGDAKKV 67

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  VVSW ++I+ + Q G+ R AL LF E++   +  +  +F + LAAC  + +L
Sbjct: 68  FDSLRRKDVVSWTAIITAFSQLGRPRVALELFWEMDLDGVKPNESTFVNILAACTYMDAL 127

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  ++ + +       V + +  + MY + G++ +A   F  + +K   SWN+++ A 
Sbjct: 128 EDGDKLYKRAISCGYGADVFVGSTAVTMYSRFGNLVEAKAAFDHLREKSTGSWNAIVRAY 187

Query: 181 ARNGNLELAFGFLHRL------PN------------------------------PDTISY 204
            ++G++  A      +      P+                              PD ++ 
Sbjct: 188 IQHGHISQAISLYKEMDVHGAEPDTFTHVCLLGACSSLGALEEGERIHARMGDKPDGLAG 247

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
           + ++   A+ G IE A+   + M S N   WN+++ GYV      EAL L+  M  + + 
Sbjct: 248 SAIVAMYAKCGGIEHAMTAFTKMSSSNVVVWNALIAGYVQGEHWQEALDLYHAMNLEGLE 307

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
            D YTFS++L   +G   L+ G  +H+ ++  GL+  + + + L++M++KCG + +A  M
Sbjct: 308 ADIYTFSSVLGACSGAKDLSEGRAVHARIVSGGLEVVVPLQNGLVNMFAKCGSLTLALEM 367

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
           FR +  +N V+WN+M+T + ++G+     ELF+++  +   +P   TF ++L  CSH+ +
Sbjct: 368 FRGMASRNTVSWNSMVTAFCQHGEGGGAFELFKEM-LLEGAEPHEQTFTSILNFCSHSGL 426

Query: 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRAL 444
             D    YF  M  ++GI P  EH   +I L+G+ G +  A++M+ E  F    + W +L
Sbjct: 427 LQDGFG-YFFDMVDEFGIAPVDEHYRCVIDLLGRTGHIAAAEKMV-EHAFPGSVIAWTSL 484

Query: 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           L+A     ++++A  +  E++++  ++    V L NL    G WD    ++  M E
Sbjct: 485 LAACRTYRNVEIAARATEELMRVRPENPAPLVQLANLCAEAGRWDAVERVKRMMEE 540



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 146/320 (45%), Gaps = 43/320 (13%)

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159
           I  ++ +F   L AC  LG ++ G  IH+++V    +   V++  ++ MY KC  + DA 
Sbjct: 6   IRPNSVTFLWILGACSNLGDVETGRKIHARMVFLGWDTDTVVSTAILGMYSKCEKLGDAK 65

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------PNPDTI-------SYNE 206
            VF  +  KD++SW ++I A ++ G   +A      +      PN  T        +Y +
Sbjct: 66  KVFDSLRRKDVVSWTAIITAFSQLGRPRVALELFWEMDLDGVKPNESTFVNILAACTYMD 125

Query: 207 VING--------------------------IAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
            +                             ++FG++ +A      +   ++ SWN+I+ 
Sbjct: 126 ALEDGDKLYKRAISCGYGADVFVGSTAVTMYSRFGNLVEAKAAFDHLREKSTGSWNAIVR 185

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
            Y+    + +A+ L+ EM       D +T   +L   + L AL  G  IH+   + G   
Sbjct: 186 AYIQHGHISQAISLYKEMDVHGAEPDTFTHVCLLGACSSLGALEEGERIHA---RMGDKP 242

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
             +  SA++ MY+KCG +E A + F  +   N+V WNA+I GY +     + ++L+  + 
Sbjct: 243 DGLAGSAIVAMYAKCGGIEHAMTAFTKMSSSNVVVWNALIAGYVQGEHWQEALDLYHAM- 301

Query: 361 TVRDLQPDSVTFLNVLAACS 380
            +  L+ D  TF +VL ACS
Sbjct: 302 NLEGLEADIYTFSSVLGACS 321



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 99/189 (52%), Gaps = 2/189 (1%)

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M  + +  +  TF  +L   + L  +  G  IH+ ++  G D   VV++A+L MYSKC +
Sbjct: 1   MDLEGIRPNSVTFLWILGACSNLGDVETGRKIHARMVFLGWDTDTVVSTAILGMYSKCEK 60

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +  A  +F SL RK++V+W A+IT +++ G     +ELF ++  +  ++P+  TF+N+LA
Sbjct: 61  LGDAKKVFDSLRRKDVVSWTAIITAFSQLGRPRVALELFWEMD-LDGVKPNESTFVNILA 119

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTV-EHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
           AC++ D   D    Y  +++  YG    V     +M    G   E   A   +RE   GS
Sbjct: 120 ACTYMDALEDGDKLYKRAISCGYGADVFVGSTAVTMYSRFGNLVEAKAAFDHLREKSTGS 179

Query: 437 YGVVWRALL 445
           +  + RA +
Sbjct: 180 WNAIVRAYI 188


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 171/571 (29%), Positives = 286/571 (50%), Gaps = 58/571 (10%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQL----HCYILKSGFLS--NVFVSTALMGFYRKINSLA 55
             + L  +LRA S L       +L    H + LK+G L     F   AL+  Y ++  +A
Sbjct: 161 TSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVA 220

Query: 56  DAHKMFV-EIP-QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
           DA ++F    P +  VV+WN+++S  VQSG + +A+    ++    +  D  +F SAL A
Sbjct: 221 DAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPA 280

Query: 114 CGQLGSLQLGMAIHSKIVKY-SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID--KDI 170
           C +L  L +G  +H+ ++K   L     +A+ L+DMY     V  A  VF  + D  K +
Sbjct: 281 CSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQL 340

Query: 171 ISWNSVIAASARNGNLELAFGFLHRL-------PNPDTIS-------------------- 203
             WN++I   A+ G  E A     R+       P   T++                    
Sbjct: 341 GMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHG 400

Query: 204 -------------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE 250
                         N +++  A+ G  + A  I + +  P+  SWN+++TG V +  V +
Sbjct: 401 YVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVAD 460

Query: 251 ALHLFGEMQSKD----VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
           A  L  EMQ  +    VP +  T  T+L G A L+A   G  IH   ++  LD  + V S
Sbjct: 461 AFQLAREMQQLEEGGVVP-NAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGS 519

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
           AL+DMY+KCG + ++ ++F  L R+N +TWN +I  Y  +G   +   LF+++    + +
Sbjct: 520 ALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEAR 579

Query: 367 PDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426
           P+ VTF+  LAACSH+ +  D+  + F +M +D+G++PT +    ++ ++G+ G +  A 
Sbjct: 580 PNEVTFMAALAACSHSGM-VDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAY 638

Query: 427 RMIRELGFGSYGV-VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485
            M+  +  G   V  W  +L A     ++ +  I+   +++LE +    YV+LCN+Y++ 
Sbjct: 639 AMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAA 698

Query: 486 GNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           G W  A+ +R+ MR RG+ KE GCSWIEV+ 
Sbjct: 699 GQWTRAAEVRSRMRRRGVAKEPGCSWIEVDG 729



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 144/339 (42%), Gaps = 62/339 (18%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL--ERGVVIANCLIDMYGKCGSVEDAIG 160
           D  +   A+ +   L   +   AIH+  ++  L       +AN L+  Y +CG +  A+ 
Sbjct: 56  DHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALE 115

Query: 161 VFGEMID--KDIISWNSVI----------------------------------------- 177
           VFG + D   D +S+NS+I                                         
Sbjct: 116 VFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHL 175

Query: 178 ---AASARNGNLELAF----GFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSP 230
              AA+ R G    AF    G LH        ++N +++  A+ G + DA  + +   +P
Sbjct: 176 PAAAAAVRLGREAHAFALKNGLLH---GHQRFAFNALLSMYARLGLVADAQRLFAG-ATP 231

Query: 231 NSS---SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
                 +WN++++  V      EA+    +M +  V  D  TF++ L   + L  L  G 
Sbjct: 232 GRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGR 291

Query: 288 LIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSL--CRKNLVTWNAMITGYA 344
            +H+ VIK   L A+  VASAL+DMY+   QV  A  +F  +    K L  WNAMI GYA
Sbjct: 292 EMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYA 351

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           + G   + + LF +++      P   T  +VL AC+ ++
Sbjct: 352 QAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSE 390



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 96/192 (50%), Gaps = 4/192 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  LL   + L      +++H Y ++    ++V V +AL+  Y K   LA +  +
Sbjct: 478 PNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAV 537

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS-EIYADAYSFTSALAACGQLGS 119
           F  +P+ + ++WN LI  Y   G   +A  LF  +  S E   +  +F +ALAAC   G 
Sbjct: 538 FDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGM 597

Query: 120 LQLGMAI-HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI--DKDIISWNSV 176
           +  G+ + H+    + +E    I  C++D+ G+ G +++A  +   M   ++ + +W+++
Sbjct: 598 VDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTM 657

Query: 177 IAASARNGNLEL 188
           + A   + N+ L
Sbjct: 658 LGACRLHRNVHL 669



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 22/242 (9%)

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           +D  S  ++ AA+ R G        LHR P+P     N ++   A+ G +  A+ +  S+
Sbjct: 71  RDARSARAIHAAALRRG-------LLHR-PSPAVA--NALLTAYARCGRLAAALEVFGSI 120

Query: 228 P--SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL----S 281
              + ++ S+NS+++      R   AL     M +   P+  +T  ++L  ++ L    +
Sbjct: 121 SDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAA 180

Query: 282 ALTWGMLIHSCVIKQGL--DASIVVASALLDMYSKCGQVEIADSMFRSLC--RKNLVTWN 337
           A+  G   H+  +K GL         +ALL MY++ G V  A  +F      R ++VTWN
Sbjct: 181 AVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWN 240

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397
            M++   ++G   + ++    +  +  ++PD VTF + L ACS  ++  D   E    + 
Sbjct: 241 TMVSVLVQSGMFDEAVQTLYDMVAL-GVRPDGVTFASALPACSRLEL-LDVGREMHAYVI 298

Query: 398 KD 399
           KD
Sbjct: 299 KD 300


>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 152/527 (28%), Positives = 272/527 (51%), Gaps = 41/527 (7%)

Query: 29  ILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ--PSVVSWNSLISGYVQSGKYR 86
           +L+    +NV + T  +        +  A K+F + PQ   S +S NS+I  Y+++ +Y 
Sbjct: 1   MLRHAIETNVQIFTKFLVISASAVGIGYARKLFDQRPQRDDSFLS-NSMIKAYLETRQYP 59

Query: 87  KALNLFVELERSEIYA-DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
            +  L+ +L +   +A D ++FT+   +C     +  G+ +HS+I ++     + ++  +
Sbjct: 60  DSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGV 119

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-PDTISY 204
           +DMY K G +  A   F EM  +  +SW ++I+   R G L+LA     ++P+  D + Y
Sbjct: 120 VDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIY 179

Query: 205 NEVINGIAQFGD-------------------------------IEDAIMILSSMPSPNSS 233
           N +++G  + GD                               I+ A  +  +MP  N  
Sbjct: 180 NAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLV 239

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQ-SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
           SWN+++ GY    +  E + LF EMQ +  +  D+ T  ++L  I+   AL+ G   H  
Sbjct: 240 SWNTMIGGYCQNKQPQEGITLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCF 299

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           V ++ LD  + V +A+LDMYSKCG++E A  +F  +  K + +WNAMI GYA NG+    
Sbjct: 300 VQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAA 359

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412
           ++LF  +  + + +PD +T L V+ AC+H  +  ++  ++F  M ++ G+   +EH   M
Sbjct: 360 LDLF--VTMMIEEKPDEITMLAVITACNHGGL-VEEGRKWFHVM-REMGLNAKIEHYGCM 415

Query: 413 IRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472
           + L+G+ G +  A+ +I  + F   G++  + LSA G   D++ A     + ++LE  +D
Sbjct: 416 VDLLGRAGSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQND 475

Query: 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAA 519
             YV+L NLY +   WD   +++N MR+   +KE GCS IE+  + +
Sbjct: 476 GNYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEINYIVS 522



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 98/196 (50%), Gaps = 2/196 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  +  +L A SD G  +  +  HC++ +      V V TA++  Y K   +  A ++
Sbjct: 272 PDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRI 331

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+  V SWN++I GY  +G  R AL+LFV +   E   D  +  + + AC   G +
Sbjct: 332 FDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEITMLAVITACNHGGLV 390

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
           + G      + +  L   +    C++D+ G+ GS+++A  +   M  + + I  +S ++A
Sbjct: 391 EEGRKWFHVMREMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPNGIILSSFLSA 450

Query: 180 SARNGNLELAFGFLHR 195
             +  ++E A   L +
Sbjct: 451 CGQYKDIERAERILKK 466


>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
 gi|194704572|gb|ACF86370.1| unknown [Zea mays]
 gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
          Length = 700

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 148/472 (31%), Positives = 250/472 (52%), Gaps = 10/472 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV     L+  Y +   +ADA  +F  +P+ +VV+WN ++ GYV      +A  LF E+ 
Sbjct: 234 NVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMP 293

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
                 ++ S+T+ ++   + G LQ    +  K+        V     L+  Y +    +
Sbjct: 294 ----IKNSISWTTIISGLARAGKLQEAKDLLDKMSFNC----VAAKTALMHGYLQRNMAD 345

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           DA  +F  M   D + WN++I+   + G LE A     R+PN D +S+N +I G AQ G 
Sbjct: 346 DARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDGQ 405

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           +  AI I   M   N+ SWNS+++G+V  +R  +ALH F  M+      D  T+++ L  
Sbjct: 406 MHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASCLRA 465

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            A L+ L  G  +H+ +++ G        +AL+  Y+KCG++  A  +F  +  K++V+W
Sbjct: 466 CANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQIFDEMVYKDIVSW 525

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           NA+I GYA NG  T+ I +F +++    ++PD VTF+ +L+ACSH  +  D+   +F SM
Sbjct: 526 NALIDGYASNGQGTEAIAVFREMEA-NGVRPDEVTFVGILSACSHAGL-IDEGLFFFYSM 583

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
           TK+Y +KP  EH   M+ L+G+ G++  A  +++ +       VW ALL A     + ++
Sbjct: 584 TKEYLLKPVAEHYACMVDLLGRAGKLNEAFELVQGMQIQPNAGVWGALLGACHMHKNHEL 643

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAG 508
           A+++A  + +LE      YV+L N+    G WD +   R  ++E+G+ K  G
Sbjct: 644 AQLAAERLSELEPRKASNYVLLSNISAEAGKWDESEKARASIKEKGVNKPPG 695



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 186/416 (44%), Gaps = 73/416 (17%)

Query: 35  LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE 94
           L N     A++    +   + +A  +F  +P  + VSWN++I+     G+   A +LF  
Sbjct: 46  LRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFDR 105

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           +       D +S+T  ++   + G L+L   +  ++     ++     N +I  Y K G 
Sbjct: 106 MP----VRDEFSWTVMVSCYARGGDLELARDVLDRMPG---DKCTACYNAMISGYAKNGR 158

Query: 155 VEDAIGVFGEMIDKDIISWNS------------------------------VIAASARNG 184
            +DA+ +  EM   D++SWNS                              ++A   R G
Sbjct: 159 FDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEMVKDMTSWNLMLAGFVRTG 218

Query: 185 NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
           +L  A  F  ++ +P+ IS+  ++NG  + G I DA  +   MP  N  +WN +L GYV+
Sbjct: 219 DLNAASSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVH 278

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG---------------------IAGLSAL 283
            + + EA  LF EM  K    +  +++T++SG                     +A  +AL
Sbjct: 279 LSPIEEACKLFDEMPIK----NSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTAL 334

Query: 284 TWGMLIHSCV-----IKQGLDASIVVA-SALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
             G L  +       I  G++    V  + ++  Y +CG +E A  +F+ +  K++V+WN
Sbjct: 335 MHGYLQRNMADDARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDMVSWN 394

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393
            MI GYA++G + K I +F ++      + ++V++ +V++     D   D +  + 
Sbjct: 395 TMIAGYAQDGQMHKAIGIFRRMN-----RRNTVSWNSVISGFVQNDRFVDALHHFM 445



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 2/182 (1%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV 69
           LRA ++L      +QLH  +++SG +++ F   AL+  Y K   + +A ++F E+    +
Sbjct: 463 LRACANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQIFDEMVYKDI 522

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
           VSWN+LI GY  +G+  +A+ +F E+E + +  D  +F   L+AC   G +  G+     
Sbjct: 523 VSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGLIDEGLFFFYS 582

Query: 130 IVKYSLERGVVIA-NCLIDMYGKCGSVEDAIG-VFGEMIDKDIISWNSVIAASARNGNLE 187
           + K  L + V     C++D+ G+ G + +A   V G  I  +   W +++ A   + N E
Sbjct: 583 MTKEYLLKPVAEHYACMVDLLGRAGKLNEAFELVQGMQIQPNAGVWGALLGACHMHKNHE 642

Query: 188 LA 189
           LA
Sbjct: 643 LA 644



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 101/192 (52%), Gaps = 9/192 (4%)

Query: 174 NSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS 233
           N  +   AR+G L  A      +P  +T++YN +++ +A+ G I++A  +   MP  N+ 
Sbjct: 22  NKELTRLARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTV 81

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           SWN+++    +  RV +A  LF  M  +    DE++++ M+S  A    L    L    +
Sbjct: 82  SWNAMIAALSDHGRVADARSLFDRMPVR----DEFSWTVMVSCYARGGDLE---LARDVL 134

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
            +   D      +A++  Y+K G+ + A  + R +   +LV+WN+ + G  ++G++ + +
Sbjct: 135 DRMPGDKCTACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVRAV 194

Query: 354 ELFEQLKTVRDL 365
           + F+++  V+D+
Sbjct: 195 QFFDEM--VKDM 204



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/317 (18%), Positives = 139/317 (43%), Gaps = 52/317 (16%)

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVIN 209
            + G +  A  +F  M  ++ +++N++++A AR+G ++ A      +P  +T+S+N +I 
Sbjct: 29  ARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIA 88

Query: 210 GIAQFGDIEDAIMILSSMPSPNSSSW--------------------------------NS 237
            ++  G + DA  +   MP  +  SW                                N+
Sbjct: 89  ALSDHGRVADARSLFDRMPVRDEFSWTVMVSCYARGGDLELARDVLDRMPGDKCTACYNA 148

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           +++GY    R  +A+ L  EM + D+     ++++ L+G+     +   +     ++K  
Sbjct: 149 MISGYAKNGRFDDAMKLLREMPAPDL----VSWNSALAGLTQSGEMVRAVQFFDEMVKDM 204

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
              ++++A      + + G +  A S F  +   N+++W  ++ GY R G +    +LF+
Sbjct: 205 TSWNLMLAG-----FVRTGDLNAASSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFD 259

Query: 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417
           ++      + + V +  +L    H   P ++  + F+ M     I  T     ++I  + 
Sbjct: 260 RMP-----ERNVVAWNVMLDGYVHLS-PIEEACKLFDEMPIKNSISWT-----TIISGLA 308

Query: 418 QKGEVWRAQRMIRELGF 434
           + G++  A+ ++ ++ F
Sbjct: 309 RAGKLQEAKDLLDKMSF 325


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 171/571 (29%), Positives = 286/571 (50%), Gaps = 58/571 (10%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQL----HCYILKSGFLS--NVFVSTALMGFYRKINSLA 55
             + L  +LRA S L       +L    H + LK+G L     F   AL+  Y ++  +A
Sbjct: 161 TSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVA 220

Query: 56  DAHKMFV-EIP-QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
           DA ++F    P +  VV+WN+++S  VQSG + +A+    ++    +  D  +F SAL A
Sbjct: 221 DAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPA 280

Query: 114 CGQLGSLQLGMAIHSKIVKY-SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID--KDI 170
           C +L  L +G  +H+ ++K   L     +A+ L+DMY     V  A  VF  + D  K +
Sbjct: 281 CSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQL 340

Query: 171 ISWNSVIAASARNGNLELAFGFLHRL-------PNPDTIS-------------------- 203
             WN++I   A+ G  E A     R+       P   T++                    
Sbjct: 341 GMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHG 400

Query: 204 -------------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE 250
                         N +++  A+ G  + A  I + +  P+  SWN+++TG V +  V +
Sbjct: 401 YVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVAD 460

Query: 251 ALHLFGEMQSKD----VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
           A  L  EMQ  +    VP +  T  T+L G A L+A   G  IH   ++  LD  + V S
Sbjct: 461 AFQLAREMQQLEEGGVVP-NAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGS 519

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
           AL+DMY+KCG + ++ ++F  L R+N +TWN +I  Y  +G   +   LF+++    + +
Sbjct: 520 ALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEAR 579

Query: 367 PDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426
           P+ VTF+  LAACSH+ +  D+  + F +M +D+G++PT +    ++ ++G+ G +  A 
Sbjct: 580 PNEVTFMAALAACSHSGM-VDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAY 638

Query: 427 RMIRELGFGSYGV-VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485
            M+  +  G   V  W  +L A     ++ +  I+   +++LE +    YV+LCN+Y++ 
Sbjct: 639 AMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAA 698

Query: 486 GNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           G W  A+ +R+ MR RG+ KE GCSWIEV+ 
Sbjct: 699 GQWTRAAEVRSRMRRRGVAKEPGCSWIEVDG 729



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 144/339 (42%), Gaps = 62/339 (18%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL--ERGVVIANCLIDMYGKCGSVEDAIG 160
           D  +   A+ +   L   +   AIH+  ++  L       +AN L+  Y +CG +  A+ 
Sbjct: 56  DHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALE 115

Query: 161 VFGEMID--KDIISWNSVI----------------------------------------- 177
           VFG + D   D +S+NS+I                                         
Sbjct: 116 VFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHL 175

Query: 178 ---AASARNGNLELAF----GFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSP 230
              AA+ R G    AF    G LH        ++N +++  A+ G + DA  + +   +P
Sbjct: 176 PAAAAAVRLGREAHAFALKNGLLH---GHQRFAFNALLSMYARLGLVADAQRLFAG-ATP 231

Query: 231 NSS---SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
                 +WN++++  V      EA+    +M +  V  D  TF++ L   + L  L  G 
Sbjct: 232 GRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGR 291

Query: 288 LIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSL--CRKNLVTWNAMITGYA 344
            +H+ VIK   L A+  VASAL+DMY+   QV  A  +F  +    K L  WNAMI GYA
Sbjct: 292 EMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYA 351

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           + G   + + LF +++      P   T  +VL AC+ ++
Sbjct: 352 QAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSE 390



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 96/192 (50%), Gaps = 4/192 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  LL   + L      +++H Y ++    ++V V +AL+  Y K   LA +  +
Sbjct: 478 PNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAV 537

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS-EIYADAYSFTSALAACGQLGS 119
           F  +P+ + ++WN LI  Y   G   +A  LF  +  S E   +  +F +ALAAC   G 
Sbjct: 538 FDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGM 597

Query: 120 LQLGMAI-HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI--DKDIISWNSV 176
           +  G+ + H+    + +E    I  C++D+ G+ G +++A  +   M   ++ + +W+++
Sbjct: 598 VDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTM 657

Query: 177 IAASARNGNLEL 188
           + A   + N+ L
Sbjct: 658 LGACRLHRNVHL 669



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 22/242 (9%)

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           +D  S  ++ AA+ R G        LHR P+P     N ++   A+ G +  A+ +  S+
Sbjct: 71  RDARSARAIHAAALRRG-------LLHR-PSPAVA--NALLTAYARCGRLAAALEVFGSI 120

Query: 228 P--SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL----S 281
              + ++ S+NS+++      R   AL     M +   P+  +T  ++L  ++ L    +
Sbjct: 121 SDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAA 180

Query: 282 ALTWGMLIHSCVIKQGL--DASIVVASALLDMYSKCGQVEIADSMFRSLC--RKNLVTWN 337
           A+  G   H+  +K GL         +ALL MY++ G V  A  +F      R ++VTWN
Sbjct: 181 AVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWN 240

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397
            M++   ++G   + ++    +  +  ++PD VTF + L ACS  ++  D   E    + 
Sbjct: 241 TMVSVLVQSGMFDEAVQTLYDMVAL-GVRPDGVTFASALPACSRLEL-LDVGREMHAYVI 298

Query: 398 KD 399
           KD
Sbjct: 299 KD 300


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 159/556 (28%), Positives = 265/556 (47%), Gaps = 46/556 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+ L  LL+  + L         H Y++K GF +   V  AL+ FY K N + +A  +
Sbjct: 408 PDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLV 467

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P    +SWNS+ISG   +G   +A+ LFV +       D+ +  S L AC +    
Sbjct: 468 FDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYW 527

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +G  +H   VK  L     +AN L+DMY  C        +F  M  K+++SW ++I + 
Sbjct: 528 FVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSY 587

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGD-------------------- 216
            R G  +   G L  +      PD  +   V++G A  GD                    
Sbjct: 588 TRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFA--GDESLKQGKSVHGYAIRNGMEK 645

Query: 217 -----------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                            +E+A ++   + + +  SWN+++ GY   N   E+  LF +M 
Sbjct: 646 LLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDML 705

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            +  P +  T + +L  +A +S+L  G  IH+  +++G       ++AL+DMY KCG + 
Sbjct: 706 LQFKP-NTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALL 764

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           +A  +F  L +KNL++W  MI GY  +G     + LFEQ++    ++PD+ +F  +L AC
Sbjct: 765 VARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRG-SGVEPDTASFSAILYAC 823

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
            H+ +  +   ++F +M K+Y I+P ++H   ++ L+   G +  A   I  +       
Sbjct: 824 CHSGLTAEGW-KFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSS 882

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W +LL       D+ +A   A  V KLE ++   YV+L N+Y     W+    ++N + 
Sbjct: 883 IWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIG 942

Query: 500 ERGLRKEAGCSWIEVE 515
            RGLR+  GCSWIEV 
Sbjct: 943 GRGLRENTGCSWIEVR 958



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 181/391 (46%), Gaps = 54/391 (13%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVS---WNSLISGYVQSGKYRKALNLFVELERSEIYADA 104
           Y K   L  A  +F E+P P V     W SL+S Y ++G +++ ++LF +++   +  DA
Sbjct: 140 YLKCGDLGGARMVFDEMP-PRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDA 198

Query: 105 YSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGE 164
           ++ +  L     LGS+  G  IH  + K  L     +AN LI +Y +CG +EDA+ VF  
Sbjct: 199 HAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDS 258

Query: 165 MIDKDIISWNSVIAASARNGNLELAFGFLHR----------------LPNPDTISYN--- 205
           M  +D ISWNS I+    NG  + A     +                LP    + +    
Sbjct: 259 MHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVG 318

Query: 206 EVINGIA-----------------------------QFGDIEDAIMILSSMPSP-NSSSW 235
           +V++G +                             + GD+  A  +  +MPS  N   W
Sbjct: 319 KVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVW 378

Query: 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
           N I+ GY       E+L LF +M    +  DE+  S +L  I  LS    G++ H  ++K
Sbjct: 379 NLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVK 438

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
            G      V +AL+  Y+K   ++ A  +F  +  ++ ++WN++I+G   NG  ++ IEL
Sbjct: 439 LGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIEL 498

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
           F ++  ++  + DS T L+VL AC+ +   F
Sbjct: 499 FVRM-WMQGHELDSTTLLSVLPACARSHYWF 528



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 197/425 (46%), Gaps = 50/425 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + +  +L+  + LG  T  + +H  + K G      V+ AL+  Y +   + DA ++
Sbjct: 196 PDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQV 255

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     +SWNS ISGY  +G + +A++LF ++        + +  S L AC +LG  
Sbjct: 256 FDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFE 315

Query: 121 QLGMAIHSKIVK-------YSLERGV--VIANCLIDMYGKCGSVEDAIGVFGEMIDK-DI 170
            +G  +H   +K        S++ G+   + + L+ MY KCG +  A  VF  M  K ++
Sbjct: 316 LVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNV 375

Query: 171 ISWNSVIAASARNGNLE---LAFGFLHRL---PNPDTIS--------------------- 203
             WN ++   A+    E   L F  +H L   P+   +S                     
Sbjct: 376 HVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGY 435

Query: 204 ------------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEA 251
                        N +I+  A+   I++A+++   MP  ++ SWNS+++G  +     EA
Sbjct: 436 LVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEA 495

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           + LF  M  +   +D  T  ++L   A       G ++H   +K GL     +A+ALLDM
Sbjct: 496 IELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDM 555

Query: 312 YSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371
           YS C      + +FR++ +KN+V+W AMIT Y R G   KV  L +++  +  ++PD   
Sbjct: 556 YSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEM-VLDGIKPDVFA 614

Query: 372 FLNVL 376
             +VL
Sbjct: 615 VTSVL 619



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 103/190 (54%), Gaps = 5/190 (2%)

Query: 215 GDIEDAIMILSSMPS--PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
           GD+  A M+   MP    +   W S+++ Y       E + LF +MQ   V  D +  S 
Sbjct: 144 GDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSC 203

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332
           +L  IA L ++T G +IH  + K GL  +  VA+AL+ +YS+CG +E A  +F S+  ++
Sbjct: 204 VLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARD 263

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
            ++WN+ I+GY  NG   + ++LF ++ +    +  SVT L+VL AC+  ++ F+ V + 
Sbjct: 264 AISWNSTISGYFSNGWHDRAVDLFSKMWS-EGTEISSVTVLSVLPACA--ELGFELVGKV 320

Query: 393 FESMTKDYGI 402
               +   G+
Sbjct: 321 VHGYSMKSGL 330


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 145/555 (26%), Positives = 279/555 (50%), Gaps = 42/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  +  A S+LG     + +H Y+++    SN  ++ +L+  Y K+  L  A ++
Sbjct: 199 PDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERL 258

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P      W  +IS Y QSG +++ALN+F +++  ++  +  +    L AC +LG +
Sbjct: 259 FENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRV 318

Query: 121 QLGMAIHSKIVKYSLERGV-VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           + G ++H  +++ +++  +  +   L+++Y   G++ D   VF  + +K I+SWN++I+ 
Sbjct: 319 KEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISI 378

Query: 180 SARNGNLELAF--------------------------------------GFLHRLPNPDT 201
             RNG  E A                                       G++ +  N + 
Sbjct: 379 FTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFND 438

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+  A+ G +  A  +   +   +  +WNS++ G+       EA+ LF +M   
Sbjct: 439 FVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMN 498

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V MD+ TF +++   + L  L  G  +H  +I  GL     + +AL DMYSKCG++++A
Sbjct: 499 CVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMA 558

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  +++V+W+ MI GY  +G +   I LF Q+     ++P+ +TF+++L+ACSH
Sbjct: 559 HGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLG-SGIKPNDITFMHILSACSH 617

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
                ++   YF SM+ ++G++P  +H   M+ L+ + G++  A ++I  L F +   +W
Sbjct: 618 AG-AVEEGKLYFNSMS-EFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIW 675

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL+       +D+ +     ++ ++      Y +L N+Y   G WD    +R+ M+ +
Sbjct: 676 GALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSK 735

Query: 502 GLRKEAGCSWIEVEN 516
           GLRK  G S IE++ 
Sbjct: 736 GLRKVPGYSTIEIDK 750



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/420 (29%), Positives = 221/420 (52%), Gaps = 42/420 (10%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + +V   +L+A S  G  +   ++H  ++K GF S+  V T+L+  Y +++ L DA K F
Sbjct: 99  SNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAF 158

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +P   VV+W+S++  +VQ+G+  + L++F ++    +  D+ +  S   AC +LGSL+
Sbjct: 159 DTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLR 218

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV-------------------------- 155
           LG ++H  +V+  +E    + N LI MYGK G +                          
Sbjct: 219 LGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYN 278

Query: 156 -----EDAIGVFGEM----IDKDIISWNSVIAASARNGNLELA---FGFLHRLPNPDTIS 203
                ++A+ VF +M    ++ + ++   V+ A AR G ++      GF+ R      + 
Sbjct: 279 QSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELD 338

Query: 204 Y--NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           +    ++   A  G++ D   +  ++      SWN++++ +    +  EAL LF +MQ++
Sbjct: 339 FLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQ 398

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D Y+ ++ LS    +S    G  IH  +IK G + +  V +AL+DMY+KCG V  A
Sbjct: 399 GLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSA 457

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           + MF  +  K+LVTWN+MI G+++NG   + I LF+Q+  +  ++ D +TFL+V+ ACSH
Sbjct: 458 NKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQM-YMNCVKMDKLTFLSVIQACSH 516



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 123/241 (51%), Gaps = 8/241 (3%)

Query: 193 LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEAL 252
           LHR P   T    ++I   AQ G  E +  +  + P P+S  W  ++  YV      EA+
Sbjct: 29  LHRHPPAST----KLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAV 84

Query: 253 HLFGEMQSKD-VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
            L+ EM  +D   +  + F ++L   +G   L+ G  +H  VIK G ++  VV ++LL M
Sbjct: 85  SLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCM 144

Query: 312 YSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371
           Y +   ++ A   F ++  +++V W++++  + +NG  ++ +++F Q+ +   ++PDSVT
Sbjct: 145 YGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMIS-EAVEPDSVT 203

Query: 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431
            L+V  ACS  ++   ++            I+       S+I + G+ G+++ A+R+   
Sbjct: 204 MLSVTEACS--ELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFEN 261

Query: 432 L 432
           +
Sbjct: 262 V 262


>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
 gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
 gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
 gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
          Length = 534

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 150/515 (29%), Positives = 260/515 (50%), Gaps = 38/515 (7%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
           Y +  L R  S   W    ++++  I+  G   + F+ T ++ F  KI  +  A ++F +
Sbjct: 12  YFIPFLQRVKSRNEW----KKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQ 67

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEI-YADAYSFTSALAACGQLGSLQL 122
           +  P+V  +NS+I  Y  +  Y   + ++ +L R      D ++F     +C  LGS  L
Sbjct: 68  VSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYL 127

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR 182
           G  +H  + K+     VV  N LIDMY K   + DA  VF EM ++D+ISWNS+      
Sbjct: 128 GKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSL------ 181

Query: 183 NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGY 242
                                    ++G A+ G ++ A  +   M      SW ++++GY
Sbjct: 182 -------------------------LSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGY 216

Query: 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
                  EA+  F EMQ   +  DE +  ++L   A L +L  G  IH    ++G     
Sbjct: 217 TGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQT 276

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
            V +AL++MYSKCG +  A  +F  +  K++++W+ MI+GYA +G+    IE F +++  
Sbjct: 277 GVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRA 336

Query: 363 RDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422
           + ++P+ +TFL +L+ACSH  + + +   YF+ M +DY I+P +EH   +I ++ + G++
Sbjct: 337 K-VKPNGITFLGLLSACSHVGM-WQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKL 394

Query: 423 WRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482
            RA  + + +       +W +LLS+     +LDVA ++   +++LE +    YV+L N+Y
Sbjct: 395 ERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIY 454

Query: 483 TSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
              G W+  S +R  +R   ++K  G S IEV N+
Sbjct: 455 ADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNI 489



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 159/351 (45%), Gaps = 58/351 (16%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    + ++ + LG     +Q+H ++ K G   +V    AL+  Y K + L DAHK+
Sbjct: 107 PDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKV 166

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRK-------------------------------AL 89
           F E+ +  V+SWNSL+SGY + G+ +K                               A+
Sbjct: 167 FDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAM 226

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
           + F E++ + I  D  S  S L +C QLGSL+LG  IH    +    +   + N LI+MY
Sbjct: 227 DFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMY 286

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA---FGFLHRLP-NPDTISYN 205
            KCG +  AI +FG+M  KD+ISW+++I+  A +GN   A   F  + R    P+ I++ 
Sbjct: 287 SKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFL 346

Query: 206 EVINGIAQFGDIEDAIMILSSMPS-----PNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +++  +  G  ++ +     M       P    +  ++       ++  A+ +     +
Sbjct: 347 GLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEI-----T 401

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           K +PM                +  WG L+ SC     LD ++V    L+++
Sbjct: 402 KTMPMKP-------------DSKIWGSLLSSCRTPGNLDVALVAMDHLVEL 439



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 130/283 (45%), Gaps = 20/283 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  L  +L + + LG     + +H Y  + GFL    V  AL+  Y K   ++ A ++
Sbjct: 239 PDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQL 298

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++    V+SW+++ISGY   G    A+  F E++R+++  +  +F   L+AC  +G  
Sbjct: 299 FGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMW 358

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           Q G+     + + Y +E  +    CLID+  + G +E A+ +   M +  D   W S+++
Sbjct: 359 QEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLS 418

Query: 179 ASARNGNLELAF---GFLHRLPNPDTISYNEVINGIAQFGDIEDAIMI--------LSSM 227
           +    GNL++A      L  L   D  +Y  + N  A  G  ED   +        +   
Sbjct: 419 SCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKT 478

Query: 228 PSPNSSSWNSILTGYVNRN-------RVPEALHLFGEMQSKDV 263
           P  +    N+I+  +V+ +        +   L LF   Q +DV
Sbjct: 479 PGGSLIEVNNIVQEFVSGDNSKPFWTEISIVLQLFTSHQDQDV 521


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 165/530 (31%), Positives = 271/530 (51%), Gaps = 61/530 (11%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NVF   A++  Y K +    AH++F +IP+P +VS+N+LIS Y   G+   AL LF  + 
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 97  RSEIYADAYSFTSALAAC----GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC 152
              +  D ++ ++ + AC    G +G L      HS  V    +  V + N L+  YGK 
Sbjct: 133 EMGLDMDXFTLSAVITACCDDVGLIGQL------HSVAVSSGFDSYVSVNNALLTYYGKN 186

Query: 153 GSVEDAIGVFGEMID-KDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEV 207
           G ++DA  VF  M   +D +SWNS+I A  ++     A G    +     N D  +   V
Sbjct: 187 GDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASV 246

Query: 208 I---------NGIAQF---------------------------GDIEDAIMILSSMPSPN 231
           +         +G  QF                           G + D   +   +  P+
Sbjct: 247 LTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPD 306

Query: 232 SSSWNSILTGYV-NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
              WN++++GY  N   + +AL  F +MQ      ++ +F  ++S  + LS+ + G  IH
Sbjct: 307 LVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIH 366

Query: 291 SCVIKQGLDAS-IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           S  +K  + ++ I V +AL+ MYSKCG ++ A  +F  +   N V+ N+MI GYA++G  
Sbjct: 367 SLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIE 426

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE---YFESMTKDYGIKPTV 406
            + + LF Q    R + P S+TF++VL+AC+HT     +V E   YF  M + + I+P  
Sbjct: 427 MESLHLF-QWMLERQIAPTSITFISVLSACAHTG----RVEEGWNYFNMMKEKFNIEPEA 481

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
           EH   MI L+G+ G++  A+ +I  + F    + W +LL A     ++++A  +A +V++
Sbjct: 482 EHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQ 541

Query: 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           LE  +   YV+L N+Y S G W+  + +R FMR+RG++K+ GCSWIEV+ 
Sbjct: 542 LEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKK 591



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 143/300 (47%), Gaps = 30/300 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKI-NSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q H  ++K+GF  N  V + L+  Y K    ++D  K+F EI +P +V WN+++SGY Q+
Sbjct: 261 QFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQN 320

Query: 83  GKY-RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG-VV 140
            ++   AL  F +++      +  SF   ++AC  L S   G  IHS  +K  +    + 
Sbjct: 321 EEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRIS 380

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRL 196
           + N LI MY KCG+++DA  +F  M + + +S NS+IA  A++G    +L L    L R 
Sbjct: 381 VDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQ 440

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEA 251
             P +I++  V++  A  G +E+     + M       P +  ++ ++       ++ EA
Sbjct: 441 IAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEA 500

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
            +L   M     P +               ++ W  L+ +C     ++ ++  A+ +L +
Sbjct: 501 ENLIARM-----PFNP-------------GSIGWASLLGACRTHGNIELAVKAANQVLQL 542



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 103/192 (53%), Gaps = 3/192 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSN-VFVSTALMGFYRKINSLADAHK 59
           PN+     ++ A S+L   +  +Q+H   LKS   SN + V  AL+  Y K  +L DA +
Sbjct: 341 PNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARR 400

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  + + + VS NS+I+GY Q G   ++L+LF  +   +I   + +F S L+AC   G 
Sbjct: 401 LFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGR 460

Query: 120 LQLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
           ++ G    + +  K+++E      +C+ID+ G+ G + +A  +   M  +   I W S++
Sbjct: 461 VEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLL 520

Query: 178 AASARNGNLELA 189
            A   +GN+ELA
Sbjct: 521 GACRTHGNIELA 532



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 118/273 (43%), Gaps = 35/273 (12%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
           F   L  C     L  G ++HS  +K  +      +N  I +Y KCG +  A   F ++ 
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
           D                               P+  S+N +I   A+      A  +   
Sbjct: 71  D-------------------------------PNVFSFNAIIAAYAKESRPLIAHQLFDQ 99

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           +P P+  S+N++++ Y +      AL LF  M+   + MD +T S +++       L  G
Sbjct: 100 IPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDVGLI-G 158

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR-KNLVTWNAMITGYAR 345
            L HS  +  G D+ + V +ALL  Y K G ++ A  +F  +   ++ V+WN+MI  Y +
Sbjct: 159 QL-HSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQ 217

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           + + +K + LF+++   R L  D  T  +VL A
Sbjct: 218 HQEGSKALGLFQEM-VRRGLNVDMFTLASVLTA 249



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 18/195 (9%)

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           F  +L        L+ G  +HS  IK  +  S   ++  + +YSKCG++  A   F+ + 
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV---TFLNVLAACSHTDIPF 386
             N+ ++NA+I  YA+        +LF+Q+      +PD V   T ++  A C  T  P 
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIP-----EPDLVSYNTLISAYADCGET-APA 124

Query: 387 DKVSEYFESMTKD---YGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
             +      M  D   + +   +  CC  + L+GQ   V  +       GF SY  V  A
Sbjct: 125 LGLFSGMREMGLDMDXFTLSAVITACCDDVGLIGQLHSVAVSS------GFDSYVSVNNA 178

Query: 444 LLSASGACSDLDVAR 458
           LL+  G   DLD A+
Sbjct: 179 LLTYYGKNGDLDDAK 193


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 154/534 (28%), Positives = 271/534 (50%), Gaps = 62/534 (11%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           ++HC  LK GF+ +V+V+ +L+  Y +  ++ +A  +F E+P   + SWN++ISGY QSG
Sbjct: 104 KIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSG 163

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
             ++AL L   L       D+ +  S L+AC + G    G+ IHS  +K+ LE  ++   
Sbjct: 164 NAKEALTLSNGLRA----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELL--- 216

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NP 199
                        D   VF  M  +D+ISWNS+I A   N     A      +      P
Sbjct: 217 ------------RDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQP 264

Query: 200 DTISYNEVINGIAQFGDI------------------------------------EDAIMI 223
           D ++   + + ++Q GDI                                    + A  +
Sbjct: 265 DCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAV 324

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK-DVPMDEYTFSTMLSGIAGLSA 282
            + +P+ +  SWN+I++GY       EA+ ++  M+ + ++  ++ T+ ++L   +   A
Sbjct: 325 FNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGA 384

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  GM +H  ++K GL   + V ++L DMY KCG++E A S+F  + R N V WN +I  
Sbjct: 385 LRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIAC 444

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           +  +G   K + LF+++     ++PD +TF+ +L+ACSH+ +  D+    FE M  DYGI
Sbjct: 445 HGFHGHGEKAVMLFKEMLD-EGVKPDHITFVTLLSACSHSGL-VDEGQWCFEMMQTDYGI 502

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
            P+++H   M+ + G+ G++  A + I+ +       +W ALLSA     ++D+ +I++ 
Sbjct: 503 TPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASE 562

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            + ++E +    +V+L N+Y S G W+    +R+    +GLRK  G S +EV+N
Sbjct: 563 HLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDN 616



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 167/343 (48%), Gaps = 25/343 (7%)

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLF-VELERSEIYADAYSFTSALAACGQLGS 119
           F  I    V +WN +ISGY ++G   + +  F + +  S +  D  +F S L AC  +  
Sbjct: 42  FDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID 101

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
              G  IH   +K+     V +A  LI +Y +  +V +A  +F EM  +D+ SWN++I+ 
Sbjct: 102 ---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISG 158

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD--------------------IED 219
             ++GN + A    + L   D+++   +++   + GD                    + D
Sbjct: 159 YCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELLRD 218

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
              +   M   +  SWNSI+  Y    +   A+ LF EM+   +  D  T  ++ S ++ 
Sbjct: 219 CQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQ 278

Query: 280 LSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
           L  +     +    +++G     I + +A++ MY+K G V+ A ++F  L   ++++WN 
Sbjct: 279 LGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNT 338

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           +I+GYA+NG  ++ IE++  ++   ++  +  T+++VL ACS 
Sbjct: 339 IISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQ 381



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 2/190 (1%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N+     +L A S  G      +LH  +LK+G   +VFV T+L   Y K   L DA  +F
Sbjct: 368 NQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLF 427

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            +IP+ + V WN+LI+ +   G   KA+ LF E+    +  D  +F + L+AC   G + 
Sbjct: 428 YQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVD 487

Query: 122 LGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
            G      +   Y +   +    C++DMYG+ G +E A+     M +  D   W ++++A
Sbjct: 488 EGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSA 547

Query: 180 SARNGNLELA 189
              +GN++L 
Sbjct: 548 CRVHGNVDLG 557


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1038

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 150/555 (27%), Positives = 269/555 (48%), Gaps = 42/555 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N   +  LL    D+    + + +H  ++K GF S V V   L+  Y       +A  +F
Sbjct: 361 NSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVF 420

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            ++P   ++SWNSL++ +V  G+   AL +   + R+    +  +FTSALAAC       
Sbjct: 421 KQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFD 480

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  +H  +V   L    +I N L+ MYGK G +  +  V  +M  +D+++WN++I   A
Sbjct: 481 KGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYA 540

Query: 182 RNGNLELAFGFLHRLP----------------------------------------NPDT 201
            N + + A      L                                           D 
Sbjct: 541 ENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDE 600

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I   A+ GD+  +  + + + + +  +WN+IL    +     E L L  +M+S 
Sbjct: 601 HVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSF 660

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            + +D+++FS  LS  A L+ L  G  +H   +K G +    + +A  DMYSKCG++   
Sbjct: 661 GLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEV 720

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             M      ++L +WN +I+   R+G   +V E F ++  +  ++P  VTF+++L ACSH
Sbjct: 721 VKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEM-GIKPGHVTFVSLLTACSH 779

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  D+   Y++ + KD+G++P +EHC  +I L+G+ G +  A+  I ++      +VW
Sbjct: 780 GGL-VDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVW 838

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R+LL++     DLD  R +A  + KLE + D V+V+  N++ + G W+    +R  M  +
Sbjct: 839 RSLLASCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSSNMFATTGRWEDVENVRKQMGFK 898

Query: 502 GLRKEAGCSWIEVEN 516
            ++K+  CSW+++++
Sbjct: 899 NIKKKQACSWVKLKD 913



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 132/475 (27%), Positives = 235/475 (49%), Gaps = 64/475 (13%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H ++ KSG LS+V+VSTA++  Y     ++ + K+F E+P  +VVSW SL+ GY   G
Sbjct: 181 QVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKG 240

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           +  + ++++  +    +  +  S +  +++CG L    LG  I  +++K  LE  + + N
Sbjct: 241 EPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVEN 300

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA---FGFLHRLP--- 197
            LI M+G  G+V+ A  +F ++ ++D ISWNS++AA A+NG++E +   F  + R     
Sbjct: 301 SLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEV 360

Query: 198 NPDTISY---------------------------------NEVINGIAQFGDIEDAIMIL 224
           N  T+S                                  N ++   A  G  E+A ++ 
Sbjct: 361 NSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVF 420

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             MP+ +  SWNS++  +VN  R  +AL +   M      ++  TF++ L+         
Sbjct: 421 KQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFD 480

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G ++H  V+  GL  + ++ +AL+ MY K G +  +  +   + R+++V WNA+I GYA
Sbjct: 481 KGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYA 540

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDK-----------VSEYF 393
            N D  K +  F+ L+ V  +  + +T ++VL+AC    +P D            VS  F
Sbjct: 541 ENEDPDKALAAFQTLR-VEGVSANYITVVSVLSACL---VPGDLLERGKPLHAYIVSAGF 596

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSAS 448
           ES   D  +K       S+I +  + G++  +Q +   L   S  + W A+L+A+
Sbjct: 597 ES---DEHVKN------SLITMYAKCGDLSSSQDLFNGLDNRSI-ITWNAILAAN 641



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 121/506 (23%), Positives = 236/506 (46%), Gaps = 48/506 (9%)

Query: 14  SDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWN 73
           S +  +T  + LH   +K     +V  +  L+  Y K   +  A  +F ++P  + VSWN
Sbjct: 69  SQITRETTGRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWN 128

Query: 74  SLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL-QLGMAIHSKIVK 132
           +++SG V+ G Y + +  F ++    I   ++   S + ACG+ GS+ + G+ +H  + K
Sbjct: 129 TMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAK 188

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF 192
             L   V ++  ++ +YG  G V  +  VF EM D++++SW S++   +  G  E     
Sbjct: 189 SGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDI 248

Query: 193 LHRLP------NPDTISY---------------------------------NEVINGIAQ 213
              +       N +++S                                  N +I+    
Sbjct: 249 YKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGN 308

Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
            G+++ A  I + +   ++ SWNSI+  Y     + E+  +F  M+     ++  T ST+
Sbjct: 309 MGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTL 368

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           LS +  +    WG  IH  V+K G D+ + V + LL MY+  G+ E AD +F+ +  K+L
Sbjct: 369 LSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDL 428

Query: 334 VTWNAMITGYARNG-DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           ++WN+++  +  +G  L  +  L   ++T + +  + VTF + LAAC   +  FDK    
Sbjct: 429 ISWNSLMASFVNDGRSLDALGILCSMIRTGKSV--NYVTFTSALAACFSPEF-FDK-GRI 484

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
              +    G+        +++ + G+ G +  ++R++ ++      V W AL+       
Sbjct: 485 LHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDV-VAWNALIGGYAENE 543

Query: 453 DLDVARISAAEVIKLEG-DSDYVYVM 477
           D D A ++A + +++EG  ++Y+ V+
Sbjct: 544 DPDKA-LAAFQTLRVEGVSANYITVV 568



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 189/398 (47%), Gaps = 41/398 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+   ++KSG  S + V  +L+  +  + ++  A+ +F +I +   +SWNS+++ Y Q+
Sbjct: 281 RQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQN 340

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   ++  +F  + R     ++ + ++ L+  G +   + G  IH  +VK   +  V + 
Sbjct: 341 GHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVC 400

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----- 197
           N L+ MY   G  E+A  VF +M  KD+ISWNS++A+   +G    A G L  +      
Sbjct: 401 NTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKS 460

Query: 198 --------------NPDTISYNEVINGI--------------------AQFGDIEDAIMI 223
                         +P+      +++G+                     + G +  +  +
Sbjct: 461 VNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRV 520

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG-IAGLSA 282
           L  MP  +  +WN+++ GY       +AL  F  ++ + V  +  T  ++LS  +     
Sbjct: 521 LLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDL 580

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G  +H+ ++  G ++   V ++L+ MY+KCG +  +  +F  L  ++++TWNA++  
Sbjct: 581 LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAA 640

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            A +G   +V++L  ++++   L  D  +F   L+A +
Sbjct: 641 NAHHGHGEEVLKLVSKMRSF-GLSLDQFSFSEGLSAAA 677



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 83/158 (52%), Gaps = 2/158 (1%)

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
           +G + ++  T G  +H+  +K  +  S++  + L++MY+K G+V+ A  +F  +  +N V
Sbjct: 66  TGFSQITRETTGRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEV 125

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFE 394
           +WN M++G  R G   + +E F+++  +  ++P S    +++ AC  +   F +  +   
Sbjct: 126 SWNTMMSGIVRVGLYLEGMEFFQKMCDL-GIKPSSFVIASLVTACGRSGSMFREGVQVHG 184

Query: 395 SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
            + K  G+   V    +++ L G  G V  ++++  E+
Sbjct: 185 FVAKS-GLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 221


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 152/484 (31%), Positives = 259/484 (53%), Gaps = 42/484 (8%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV    A++  Y +   + +A  +F  +P  + +SW  +I+GY ++G+  +AL     L 
Sbjct: 351 NVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALH 410

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           R  +     S TS+  AC  + +L+ G  +HS  VK   +    + N LI +YGK  S+ 
Sbjct: 411 RKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIG 470

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
               +F  M  KD                               T+SYN  ++ + Q   
Sbjct: 471 SVRQIFDRMTVKD-------------------------------TVSYNSFMSALVQNNL 499

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLS 275
            ++A  + ++MPSP+  SW +I++     ++  EA+ +F  M   +++P       T+L 
Sbjct: 500 FDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELP--NPPILTILL 557

Query: 276 GIAG-LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM--FRSLCRKN 332
           G++G L A   G  IH+  IK G+D+ +VVA+AL+ MY KC     ADS+  F S+  ++
Sbjct: 558 GLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSS---ADSLKVFDSMEERD 614

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           + TWN +ITGYA++G   + I ++ QL     + P+ VTF+ +L ACSH+ +  D+  ++
Sbjct: 615 IFTWNTIITGYAQHGLGREAIRMY-QLMVSAGVLPNEVTFVGLLHACSHSGL-VDEGHQF 672

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452
           F+SM+ DYG+ P +EH   M+ L+G+ G+V  A+  I ++      V+W ALL A     
Sbjct: 673 FKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHK 732

Query: 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           ++++ R +A ++  +E  +   YVML N+Y+S G WD  + +R  M+ERG+ K+ GCSW+
Sbjct: 733 NVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWM 792

Query: 513 EVEN 516
           +++N
Sbjct: 793 QIKN 796



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 112/472 (23%), Positives = 213/472 (45%), Gaps = 54/472 (11%)

Query: 54  LADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
           + +A  +F  +P+ + VSW  +ISGYV   ++ +A ++F  +    +  +  +  S L+A
Sbjct: 173 MEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSA 232

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGK-CGSVEDAIGVFGEMIDKDIIS 172
              LG   +  +IH  + K   ER VV+   +++ Y K    ++ A+  F  M  ++  +
Sbjct: 233 VRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYT 292

Query: 173 WNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           W+++IAA ++ G ++ AF    R P     S   ++ G+A++G I+DA ++   +  PN 
Sbjct: 293 WSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDAKILFDQIHEPNV 352

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA-------------- 278
            SWN+++TGY+    V EA  LF  M  ++      +++ M++G A              
Sbjct: 353 VSWNAMITGYMQNEMVDEAEDLFNRMPFRNT----ISWAGMIAGYARNGRSEQALVSLQA 408

Query: 279 ---------------------GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
                                 + AL  G  +HS  +K G   +  V +AL+ +Y K   
Sbjct: 409 LHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRS 468

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +     +F  +  K+ V++N+ ++   +N    +  ++F  + +     PD V++  +++
Sbjct: 469 IGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPS-----PDVVSWTTIIS 523

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR---ELGF 434
           AC+  D   + V E F SM  +  + P       ++ L G  G     Q++     +LG 
Sbjct: 524 ACAQADQGNEAV-EIFRSMLHEREL-PNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGM 581

Query: 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486
            S  VV  AL+S    CS  D  ++  +    +E    + +  +   Y  HG
Sbjct: 582 DSGLVVANALVSMYFKCSSADSLKVFDS----MEERDIFTWNTIITGYAQHG 629



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 153/348 (43%), Gaps = 49/348 (14%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           ++  L +A ++F  +P   +++WNS+I  Y  +G      +L          ADA S   
Sbjct: 45  RLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSL----------ADAISG-- 92

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
                   G+L+ G                     L+  Y + G V DA  VF  M  ++
Sbjct: 93  --------GNLRTG-------------------TILLSGYARAGRVRDARRVFDGMGVRN 125

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
            ++WN+++    +NG++ LA      +P+ D  S+N ++ G      +E+A  +   MP 
Sbjct: 126 TVAWNAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPE 185

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            N  SW  +++GYV   +   A  +F  M  + +  ++    ++LS +  L        I
Sbjct: 186 RNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESI 245

Query: 290 HSCVIKQGLDASIVVASALLDMYSK-CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           H  V K G +  +VV +A+L+ Y+K    ++ A   F  +  +N  TW+ +I   ++ G 
Sbjct: 246 HVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGR 305

Query: 349 LTKVIELFEQ--LKTVRDLQPDSVTFLNVLAACSHTD---IPFDKVSE 391
           +     ++++  LK+V    P   + L  LA     D   I FD++ E
Sbjct: 306 IDDAFAVYQRDPLKSV----PSRTSMLTGLARYGRIDDAKILFDQIHE 349



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 116/251 (46%), Gaps = 54/251 (21%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H   +K+G   N +V  AL+  Y K  S+    ++F  +     VS+NS +S  VQ+
Sbjct: 438 KQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQN 497

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAAC---------------------------- 114
             + +A ++F  +       D  S+T+ ++AC                            
Sbjct: 498 NLFDEARDVFNNMPS----PDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPIL 553

Query: 115 -------GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
                  G LG+ QLG  IH+  +K  ++ G+V+AN L+ MY KC S  D++ VF  M +
Sbjct: 554 TILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSA-DSLKVFDSMEE 612

Query: 168 KDIISWNSVIAASARNG---------NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIE 218
           +DI +WN++I   A++G          L ++ G L     P+ +++  +++  +  G ++
Sbjct: 613 RDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVL-----PNEVTFVGLLHACSHSGLVD 667

Query: 219 DAIMILSSMPS 229
           +      SM S
Sbjct: 668 EGHQFFKSMSS 678



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 98/191 (51%), Gaps = 3/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN  +L  LL  S +LG     QQ+H   +K G  S + V+ AL+  Y K +S AD+ K+
Sbjct: 548 PNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSS-ADSLKV 606

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  + +WN++I+GY Q G  R+A+ ++  +  + +  +  +F   L AC   G +
Sbjct: 607 FDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLV 666

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G      +   Y L   +    C++D+ G+ G V+ A     +M I+ D + W++++ 
Sbjct: 667 DEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLG 726

Query: 179 ASARNGNLELA 189
           A   + N+E+ 
Sbjct: 727 ACKIHKNVEIG 737



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 47/230 (20%)

Query: 194 HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
           H   +P T + +  I  + + G + +A  +  SMP  +  +WNS++  Y N N +P+A  
Sbjct: 26  HVPRSPGTSAQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCN-NGMPDA-- 82

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
                             ++   I+G                     ++   + LL  Y+
Sbjct: 83  ----------------GRSLADAISG--------------------GNLRTGTILLSGYA 106

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           + G+V  A  +F  +  +N V WNAM+T Y +NGD+T   +LF+ + + RD+     ++ 
Sbjct: 107 RAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPS-RDVS----SWN 161

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW 423
            +L    H+ +  ++    FE M +  G+  TV    S   L+ Q G  W
Sbjct: 162 TMLTGYCHSQL-MEEARNLFERMPERNGVSWTV--MISGYVLIEQHGRAW 208


>gi|347954466|gb|AEP33733.1| chlororespiratory reduction 21, partial [Lepidium sativum]
          Length = 805

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 147/529 (27%), Positives = 278/529 (52%), Gaps = 11/529 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +   L AS+++G     +Q H   + +G   +  + T+++ FY K+  +  A  +
Sbjct: 250 PTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMI 309

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I    +V+WN LISGYVQ G    A+ +   +    +  D+ + ++ ++A  +  +L
Sbjct: 310 FDRIIGKDIVTWNLLISGYVQQGLVDDAMYMCKLMRLENLRYDSVTLSTLMSAAARTQNL 369

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  +    +++S E  +V+A+  +DMY KCGS+ DA  VF    +KD+I WN+++AA 
Sbjct: 370 NLGKEVQCYSIRHSFESEIVLASSTVDMYAKCGSIVDAKKVFESTAEKDLILWNTLLAAY 429

Query: 181 ARNG----NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PNS 232
           A +G     L+L +  L     P+ I++N +I    + G +++A  +   M S    PN 
Sbjct: 430 ADSGLSGEALKLFYDMLLESVPPNIITWNSIILSFLRNGQVDEAKEMFLQMQSSGIFPNL 489

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
            SW +++ G+V      EA+    +MQ   +  + +T S  LS    L +L +G  IH  
Sbjct: 490 ISWTTMMNGWVQNGCSEEAIIFLRKMQESGLRPNAFTISVALSACTHLVSLNFGRSIHGY 549

Query: 293 VIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
           +I+     +S+   ++L+D+Y+KCG +  A+ +F +     L   NAMI+ YA  G++ +
Sbjct: 550 IIRNFQHSSSVSFETSLVDLYAKCGDINQAEKVFGNKLYDELPLHNAMISAYALYGNVKE 609

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411
            I L+ +L+ +  ++PD++TF ++L AC+H       ++  F  M   + +KP +EH   
Sbjct: 610 SITLYRRLEDMA-MKPDNITFTSLLYACTHAGDIVQAIN-IFTEMVSKHDMKPCLEHYGL 667

Query: 412 MIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471
           M+ ++   GE  +A  +I E+ +     + ++L+++       ++    + ++++ E ++
Sbjct: 668 MVDILASSGETNKALELIEEMPYKPDARMIQSLVASCNKQHKTELVDYLSRQLLESEPEN 727

Query: 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAH 520
              YV + N Y   G+W+    MR  M+ +GL+K+ GCSWI+++    H
Sbjct: 728 SGNYVTISNAYAIEGSWNEVMKMREMMKAKGLKKKPGCSWIQIKGEGVH 776



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 129/488 (26%), Positives = 225/488 (46%), Gaps = 47/488 (9%)

Query: 23  QQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           QQ+H  ILK+G  +  N ++ T L+ FY K ++L  A  +F  +   +V SW ++I    
Sbjct: 68  QQIHARILKNGAFYARNEYIETKLLIFYAKCDALEVAQDLFSRLRVRNVFSWAAIIGLKC 127

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           + G    AL  FVE+  + +  D Y   +   ACG L     G  +H  ++K  L   V 
Sbjct: 128 RIGLCEGALLGFVEMLENGVLPDNYVVPNVCKACGALHWSWFGRGVHGYVLKAGLHDCVF 187

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL---- 196
           +A+ L DMYGKCG ++DA  VF E+ ++++++WN+++    +NG  E A   L  +    
Sbjct: 188 VASSLADMYGKCGVLDDARMVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEG 247

Query: 197 --PNPDTISY---------------------------------NEVINGIAQFGDIEDAI 221
             P   T+S                                    ++N   + G IE A 
Sbjct: 248 IEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAE 307

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           MI   +   +  +WN +++GYV +  V +A+++   M+ +++  D  T ST++S  A   
Sbjct: 308 MIFDRIIGKDIVTWNLLISGYVQQGLVDDAMYMCKLMRLENLRYDSVTLSTLMSAAARTQ 367

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  +    I+   ++ IV+AS+ +DMY+KCG +  A  +F S   K+L+ WN ++ 
Sbjct: 368 NLNLGKEVQCYSIRHSFESEIVLASSTVDMYAKCGSIVDAKKVFESTAEKDLILWNTLLA 427

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            YA +G   + ++LF  +  +  + P+ +T+ +++ +        D+  E F  M +  G
Sbjct: 428 AYADSGLSGEALKLFYDM-LLESVPPNIITWNSIILSFLRNG-QVDEAKEMFLQM-QSSG 484

Query: 402 IKPTVEHCCSMIRLMGQKG---EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
           I P +    +M+    Q G   E     R ++E G           LSA      L+  R
Sbjct: 485 IFPNLISWTTMMNGWVQNGCSEEAIIFLRKMQESGLRPNAFTISVALSACTHLVSLNFGR 544

Query: 459 ISAAEVIK 466
                +I+
Sbjct: 545 SIHGYIIR 552



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/473 (23%), Positives = 214/473 (45%), Gaps = 84/473 (17%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ YV+ ++ +A   L W  + + +H Y+LK+G    VFV+++L   Y K   L DA  +
Sbjct: 149 PDNYVVPNVCKACGALHWSWFGRGVHGYVLKAGLHDCVFVASSLADMYGKCGVLDDARMV 208

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EIP+ +VV+WN+L+ GYVQ+G   +A+ L  ++ +  I     + ++ L+A   +G +
Sbjct: 209 FDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMGGI 268

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN------ 174
           + G   H+  +   LE   ++   +++ Y K G +E A  +F  +I KDI++WN      
Sbjct: 269 EEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRIIGKDIVTWNLLISGY 328

Query: 175 -----------------------------SVIAASARNGNLELA-----FGFLHRLPNPD 200
                                        ++++A+AR  NL L      +   H   + +
Sbjct: 329 VQQGLVDDAMYMCKLMRLENLRYDSVTLSTLMSAAARTQNLNLGKEVQCYSIRHSFES-E 387

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +  +  ++  A+ G I DA  +  S    +   WN++L  Y +     EAL LF +M  
Sbjct: 388 IVLASSTVDMYAKCGSIVDAKKVFESTAEKDLILWNTLLAAYADSGLSGEALKLFYDMLL 447

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           + VP +                +TW  +I S                    + + GQV+ 
Sbjct: 448 ESVPPN---------------IITWNSIILS--------------------FLRNGQVDE 472

Query: 321 ADSMFRSLCRK----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           A  MF  +       NL++W  M+ G+ +NG   + I    +++    L+P++ T    L
Sbjct: 473 AKEMFLQMQSSGIFPNLISWTTMMNGWVQNGCSEEAIIFLRKMQE-SGLRPNAFTISVAL 531

Query: 377 AACSH-TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM 428
           +AC+H   + F +    +  + +++    +V    S++ L  + G++ +A+++
Sbjct: 532 SACTHLVSLNFGRSIHGY--IIRNFQHSSSVSFETSLVDLYAKCGDINQAEKV 582



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 11/157 (7%)

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
           +P+SSS+   ++       + EAL L  EM  ++V +    +  +L G      L  G  
Sbjct: 10  NPSSSSYFHQISSLCKHGEIREALRLVKEMDFRNVRIGPEIYGEILQGCVYERDLCTGQQ 69

Query: 289 IHSCVIKQG--LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR- 345
           IH+ ++K G     +  + + LL  Y+KC  +E+A  +F  L  +N+ +W A+I    R 
Sbjct: 70  IHARILKNGAFYARNEYIETKLLIFYAKCDALEVAQDLFSRLRVRNVFSWAAIIGLKCRI 129

Query: 346 ---NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
               G L   +E+ E       + PD+    NV  AC
Sbjct: 130 GLCEGALLGFVEMLEN-----GVLPDNYVVPNVCKAC 161


>gi|91805879|gb|ABE65668.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 520

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 149/495 (30%), Positives = 260/495 (52%), Gaps = 38/495 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H  I+K+GF  ++ +S  L+  + K   L+ A ++F E+P+P++ ++N +ISGY++ 
Sbjct: 54  KKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKH 113

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL-----QLGMAIHSKIVKYSLER 137
           G  ++ L L   +  S   AD Y+ +  L A    GS       L   +H++I+K  +E 
Sbjct: 114 GLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVEL 173

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
             V+   L+D Y K G +E A  VF  M D++++   S+I+     G +E A    +   
Sbjct: 174 DDVLITALVDTYVKSGKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTK 233

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
             D + YN ++ G ++ G+                                  ++ ++  
Sbjct: 234 VKDIVVYNAMVEGFSRSGET------------------------------AKRSVDMYIS 263

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           MQ      +  TF++++   A L++   G  +H+ ++K G+   I + S+LLDMY+KCG 
Sbjct: 264 MQRAGFHPNISTFASVIGACAVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGG 323

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +  A  +F  +  KN+ +W +MI GY +NG+  + +ELF ++K  R ++P+ VTFL  L+
Sbjct: 324 INDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFR-IEPNYVTFLGALS 382

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           ACSH+ +  DK  E FESM +DY +KP +EH   ++ LMG+ G++ +A    R +     
Sbjct: 383 ACSHSGL-VDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPD 441

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY-VYVMLCNLYTSHGNWDVASVMRN 496
             +W ALLS+     ++++A I+A+E+ KL  D     Y+ L N+Y S+  WD  S +R 
Sbjct: 442 SDIWAALLSSCNLHGNVELASIAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIRE 501

Query: 497 FMRERGLRKEAGCSW 511
            M+ R + K  G SW
Sbjct: 502 VMKRRRISKTIGRSW 516



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 123/265 (46%), Gaps = 41/265 (15%)

Query: 4   YVLFHLLRASSDLGWD-----TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           Y L  +L+AS+  G       + C+ +H  I+K     +  + TAL+  Y K   L  A 
Sbjct: 136 YTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVELDDVLITALVDTYVKSGKLESAR 195

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSG--------------------------------KYR 86
            +F  +   +VV   S+ISGY+  G                                  +
Sbjct: 196 TVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFSRSGETAK 255

Query: 87  KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
           +++++++ ++R+  + +  +F S + AC  L S ++G  +H++I+K  +   + + + L+
Sbjct: 256 RSVDMYISMQRAGFHPNISTFASVIGACAVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLL 315

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTI 202
           DMY KCG + DA  VF +M +K++ SW S+I    +NGN E A     R+      P+ +
Sbjct: 316 DMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYV 375

Query: 203 SYNEVINGIAQFGDIEDAIMILSSM 227
           ++   ++  +  G ++    I  SM
Sbjct: 376 TFLGALSACSHSGLVDKGYEIFESM 400



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  IH+ +IK G    + ++  LL ++ KCG +  A  +F  L +  L  +N MI+GY +
Sbjct: 53  GKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLK 112

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           +G L K + L  Q  +    + D  T   VL A
Sbjct: 113 HG-LVKELLLLVQRMSYSGEKADGYTLSMVLKA 144


>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g44880-like [Glycine max]
          Length = 599

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 152/532 (28%), Positives = 261/532 (49%), Gaps = 44/532 (8%)

Query: 24  QLHCYILKSGFLSNVFVSTALM--------GFYRKINSLADAHKMFVEIPQPSVVSWNSL 75
           Q+H +IL+    SN+ + TA +           R +  +  A + F           NS+
Sbjct: 35  QIHAFILRHSLHSNLNLLTAFVTTCASLAASAKRPLAIINHARRFFNATHTRDTFLCNSM 94

Query: 76  ISGYVQSGKYRKALNLFVELERS--EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY 133
           I+ +  + ++ +   LF +L R       D Y+FT+ +  C    +   G  +H  ++K 
Sbjct: 95  IAAHFAARQFSQPFTLFRDLRRQAPPFTPDGYTFTALVKGCATRVATGEGTLLHGMVLKN 154

Query: 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL 193
            +   + +A  L+DMY K G +  A  VF EM  +  +SW +VI   AR G++  A    
Sbjct: 155 GVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVGYARCGDMSEARRLF 214

Query: 194 HRLPNPDTISYNEVINGIAQFG-------------------------------DIEDAIM 222
             + + D +++N +I+G  + G                               D+E+A +
Sbjct: 215 DEMEDRDIVAFNAMIDGYVKMGCVGLARELFNEMRERNVVSWTSMVSGYCGNGDVENAKL 274

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           +   MP  N  +WN+++ GY    R  +AL LF EMQ+  V  +E T   +L  +A L A
Sbjct: 275 MFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPAVADLGA 334

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G  IH   +++ LD S  + +AL+DMY+KCG++  A   F  +  +   +WNA+I G
Sbjct: 335 LDLGRWIHRFALRKKLDRSARIGTALIDMYAKCGEITKAKLAFEGMTERETASWNALING 394

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           +A NG   + +E+F ++       P+ VT + VL+AC+H  +  ++   +F +M + +GI
Sbjct: 395 FAVNGCAKEALEVFARM-IEEGFGPNEVTMIGVLSACNHCGL-VEEGRRWFNAMER-FGI 451

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
            P VEH   M+ L+G+ G +  A+ +I+ + + + G++  + L A G  +D+  A     
Sbjct: 452 APQVEHYGCMVDLLGRAGCLDEAENLIQTMPYDANGIILSSFLFACGYFNDVLRAERVLK 511

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           EV+K++ D    YVML NLY +   W     ++  M++RG  KE  CS IE+
Sbjct: 512 EVVKMDEDVAGNYVMLRNLYATRQRWTDVEDVKQMMKKRGTSKEVACSVIEI 563



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 76/158 (48%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  +  +L A +DLG     + +H + L+     +  + TAL+  Y K   +  A   
Sbjct: 317 PNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALIDMYAKCGEITKAKLA 376

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +    SWN+LI+G+  +G  ++AL +F  +       +  +    L+AC   G +
Sbjct: 377 FEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFGPNEVTMIGVLSACNHCGLV 436

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
           + G    + + ++ +   V    C++D+ G+ G +++A
Sbjct: 437 EEGRRWFNAMERFGIAPQVEHYGCMVDLLGRAGCLDEA 474


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 145/501 (28%), Positives = 261/501 (52%), Gaps = 36/501 (7%)

Query: 20  TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79
           T  +++H +++K     + F+ T ++     +  ++ A  +F ++  P++ ++N++I  Y
Sbjct: 24  TQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTY 83

Query: 80  VQSGKYRKALNLFVEL---ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE 136
             +  +  A+++FV++     + ++ D ++F   + +C  +   +LGM +H  + K+  +
Sbjct: 84  AHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKFGAD 143

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196
              +  N LIDMY K G + +A  VF EM  +D+                          
Sbjct: 144 FHCITENALIDMYTKFGDLTNACKVFEEMSHRDV-------------------------- 177

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
                IS+N +I G  + G +  A  +   MP     SW +++TGY       +AL +F 
Sbjct: 178 -----ISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFR 232

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           EMQ   +  DE +   +L   A L AL  G  IH    K G      + +AL++MY+KCG
Sbjct: 233 EMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCG 292

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            ++ A ++F  L  K++++W+ MI G A +G   + I+LFE++  VR + P+ +TFL VL
Sbjct: 293 CIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVR-VAPNEITFLGVL 351

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
            ACSHT + +D+  +YF+ M+  Y I+P +EH   +I L+G+ G + +A   I ++    
Sbjct: 352 LACSHTGL-WDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKP 410

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
              +W +LLS+     +L +A I+  ++++LE +    YV+L N+Y  HG W+  S +R 
Sbjct: 411 DSRIWNSLLSSCRIHRNLQIAVIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRK 470

Query: 497 FMRERGLRKEAGCSWIEVENV 517
            +R + ++K  G S IEV NV
Sbjct: 471 LIRNKRIKKTPGSSSIEVNNV 491



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 121/259 (46%), Gaps = 13/259 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +  +L A + LG     + +H Y  K+GFL    +  AL+  Y K   + +A  +
Sbjct: 241 PDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNL 300

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ +  V+SW+++I G    GK  +A+ LF E+ +  +  +  +F   L AC   G  
Sbjct: 301 FDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLW 360

Query: 121 QLGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G+     +   Y +E  +    CLID+ G+ G +  A+    +M I  D   WNS+++
Sbjct: 361 DEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLS 420

Query: 179 ASARNGNLE---LAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMI--------LSSM 227
           +   + NL+   +A   L  L   ++ +Y  + N  A+ G  ED   I        +   
Sbjct: 421 SCRIHRNLQIAVIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKT 480

Query: 228 PSPNSSSWNSILTGYVNRN 246
           P  +S   N+++  +V+ +
Sbjct: 481 PGSSSIEVNNVVQEFVSSD 499


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 156/564 (27%), Positives = 284/564 (50%), Gaps = 58/564 (10%)

Query: 1   PNEYVLFHLLRAS-----SDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLA 55
           PN      +L AS     S L W    + +H +  ++GF+S++ +  AL+  Y K  S+ 
Sbjct: 419 PNLTTYLSILNASAIASTSALEW---VKVVHKHAEEAGFISDLRIGNALIHMYAKCGSID 475

Query: 56  DAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACG 115
           DA  +F  +    V+SWN+++ G  Q+G   +A  +F+++++  +  D+ ++ S L   G
Sbjct: 476 DARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHG 535

Query: 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175
              +L+    +H   V+  L     + +  I MY +CGS++DA  +F ++  + + +WN+
Sbjct: 536 STDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNA 595

Query: 176 VI--AASARNGNLELAF-------GFLHRLPNPDTISY---------------------- 204
           +I  AA  R G   L+        GF+     PD  ++                      
Sbjct: 596 MIGGAAQQRCGREALSLFLQMQREGFI-----PDATTFINILSANVDEEALEWVKEVHSH 650

Query: 205 ------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEAL 252
                       N +++  ++ G+++ A  +   M   N ++W  ++ G        +A 
Sbjct: 651 ATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAF 710

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
             F +M  + +  D  T+ ++LS  A   AL W   +H+  +  GL + + V +AL+ MY
Sbjct: 711 SHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMY 770

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
           +KCG ++ A S+F  +  +++ +W  MI G A++G   + ++ F ++K+    +P+  ++
Sbjct: 771 AKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKS-EGFKPNGYSY 829

Query: 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
           + VL ACSH  +  D+    F SMT+DYGI+PT+EH   M+ L+G+ G +  A+  I  +
Sbjct: 830 VAVLTACSHAGL-VDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNM 888

Query: 433 GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVAS 492
                   W ALL A     +L++A  +A E +KL+  S   YV+L N+Y + G W+   
Sbjct: 889 PIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKL 948

Query: 493 VMRNFMRERGLRKEAGCSWIEVEN 516
           ++R+ M+ +G+RKE G SWIEV+N
Sbjct: 949 LVRSMMQRKGIRKEPGRSWIEVDN 972



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/422 (29%), Positives = 210/422 (49%), Gaps = 48/422 (11%)

Query: 1   PNEYVLFHLLRASS---DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
           PNE     +L+A     +L W    +++H +I++SGF S+V V TAL+  Y K  S+ DA
Sbjct: 217 PNEITYLSILKACCCPVNLKWG---KKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDA 273

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
             +F ++ + +V+SW  +I G    G+ ++A +LF++++R     ++Y++ S L A    
Sbjct: 274 QLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASA 333

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
           G+L+    +HS  V   L   + + N L+ MY K GS++DA  VF  M ++DI SW  +I
Sbjct: 334 GALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMI 393

Query: 178 AASARNGNLELAFG-FLHRLPN---PDTISY----------------------------- 204
              A++G  + AF  FL    N   P+  +Y                             
Sbjct: 394 GGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAG 453

Query: 205 --------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
                   N +I+  A+ G I+DA ++   M   +  SWN+++ G        EA  +F 
Sbjct: 454 FISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFL 513

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           +MQ + +  D  T+ ++L+      AL W   +H   ++ GL +   V SA + MY +CG
Sbjct: 514 QMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCG 573

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            ++ A  +F  L  +++ TWNAMI G A+     + + LF Q++      PD+ TF+N+L
Sbjct: 574 SIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQR-EGFIPDATTFINIL 632

Query: 377 AA 378
           +A
Sbjct: 633 SA 634



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 200/402 (49%), Gaps = 42/402 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  I+KSG   N++V+  L+  Y +   L  A ++F ++ + ++  W ++I GY + 
Sbjct: 138 KQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEY 197

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G    A+ ++ ++ +     +  ++ S L AC    +L+ G  IH+ I++   +  V + 
Sbjct: 198 GHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVE 257

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
             L++MY KCGS+EDA  +F +M+++++ISW  +I   A  G  + AF    ++      
Sbjct: 258 TALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFI 317

Query: 199 PDTISYNEVING-----------------------------------IAQFGDIEDAIMI 223
           P++ +Y  ++N                                     A+ G I+DA ++
Sbjct: 318 PNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVV 377

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML--SGIAGLS 281
              M   +  SW  ++ G     R  EA  LF +MQ      +  T+ ++L  S IA  S
Sbjct: 378 FDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTS 437

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL W  ++H    + G  + + + +AL+ MY+KCG ++ A  +F  +C +++++WNAM+ 
Sbjct: 438 ALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMG 497

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           G A+NG   +   +F Q++    L PDS T+L++L     TD
Sbjct: 498 GLAQNGCGHEAFTVFLQMQQ-EGLVPDSTTYLSLLNTHGSTD 538



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 150/318 (47%), Gaps = 40/318 (12%)

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159
           I  D++S+ + L  C +   + L   +H  I+K  +E+ + +AN L+ +Y +CG ++ A 
Sbjct: 114 IAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCAR 173

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISY----------- 204
            VF +++ K+I  W ++I   A  G+ E A     ++      P+ I+Y           
Sbjct: 174 QVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPV 233

Query: 205 ------------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                                     ++N   + G IEDA +I   M   N  SW  ++ 
Sbjct: 234 NLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIG 293

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           G  +  R  EA HLF +MQ +    + YT+ ++L+  A   AL W   +HS  +  GL  
Sbjct: 294 GLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLAL 353

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
            + V +AL+ MY+K G ++ A  +F  +  +++ +W  MI G A++G   +   LF Q++
Sbjct: 354 DLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQ 413

Query: 361 TVRDLQPDSVTFLNVLAA 378
               L P+  T+L++L A
Sbjct: 414 RNGCL-PNLTTYLSILNA 430



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 128/272 (47%), Gaps = 14/272 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      +L A +  G   + +++H + + +G +S++ V  AL+  Y K  S+ DA  +
Sbjct: 723 PDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSV 782

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ +  V SW  +I G  Q G+  +AL+ FV+++      + YS+ + L AC   G +
Sbjct: 783 FDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLV 842

Query: 121 QLG-MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA-IGVFGEMIDKDIISWNSVIA 178
             G     S    Y +E  +    C++D+ G+ G +E+A + +    I+ D   W +++ 
Sbjct: 843 DEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLG 902

Query: 179 ASARNGNLELA-FGFLHRLP-NPDTISYNEVINGI-AQFGDIEDAIMILSSMPSPN---- 231
           A    GNLE+A F    RL   P + S   +++ I A  G  E  +++ S M        
Sbjct: 903 ACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKE 962

Query: 232 -SSSW----NSILTGYVNRNRVPEALHLFGEM 258
              SW    N I +  V     PE+  ++ ++
Sbjct: 963 PGRSWIEVDNRIHSFVVGDTSHPESKEIYAQL 994



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 68/120 (56%), Gaps = 1/120 (0%)

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            + + +D +++  +L        +     +H C+IK G++ ++ VA+ LL +Y +CG+++
Sbjct: 111 QQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQ 170

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F  L +KN+  W  MI GYA  G     + ++++++     QP+ +T+L++L AC
Sbjct: 171 CARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQ-ECGQPNEITYLSILKAC 229


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 171/571 (29%), Positives = 286/571 (50%), Gaps = 58/571 (10%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQL----HCYILKSGFLS--NVFVSTALMGFYRKINSLA 55
             + L  +LRA S L       +L    H + LK+G L     F   AL+  Y ++  +A
Sbjct: 9   TSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVA 68

Query: 56  DAHKMFV-EIP-QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
           DA ++F    P +  VV+WN+++S  VQSG + +A+    ++    +  D  +F SAL A
Sbjct: 69  DAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPA 128

Query: 114 CGQLGSLQLGMAIHSKIVKY-SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID--KDI 170
           C +L  L +G  +H+ ++K   L     +A+ L+DMY     V  A  VF  + D  K +
Sbjct: 129 CSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQL 188

Query: 171 ISWNSVIAASARNGNLELAFGFLHRL-------PNPDTIS-------------------- 203
             WN++I   A+ G  E A     R+       P   T++                    
Sbjct: 189 GMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHG 248

Query: 204 -------------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE 250
                         N +++  A+ G  + A  I + +  P+  SWN+++TG V +  V +
Sbjct: 249 YVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVAD 308

Query: 251 ALHLFGEMQSKD----VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
           A  L  EMQ  +    VP +  T  T+L G A L+A   G  IH   ++  LD  + V S
Sbjct: 309 AFQLAREMQQLEEGGVVP-NAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGS 367

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
           AL+DMY+KCG + ++ ++F  L R+N +TWN +I  Y  +G   +   LF+++    + +
Sbjct: 368 ALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEAR 427

Query: 367 PDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426
           P+ VTF+  LAACSH+ +  D+  + F +M +D+G++PT +    ++ ++G+ G +  A 
Sbjct: 428 PNEVTFMAALAACSHSGM-VDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAY 486

Query: 427 RMIRELGFGSYGV-VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485
            M+  +  G   V  W  +L A     ++ +  I+   +++LE +    YV+LCN+Y++ 
Sbjct: 487 AMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAA 546

Query: 486 GNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           G W  A+ +R+ MR RG+ KE GCSWIEV+ 
Sbjct: 547 GQWTRAAEVRSRMRRRGVAKEPGCSWIEVDG 577



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 96/192 (50%), Gaps = 4/192 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  LL   + L      +++H Y ++    ++V V +AL+  Y K   LA +  +
Sbjct: 326 PNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAV 385

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS-EIYADAYSFTSALAACGQLGS 119
           F  +P+ + ++WN LI  Y   G   +A  LF  +  S E   +  +F +ALAAC   G 
Sbjct: 386 FDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGM 445

Query: 120 LQLGMAI-HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI--DKDIISWNSV 176
           +  G+ + H+    + +E    I  C++D+ G+ G +++A  +   M   ++ + +W+++
Sbjct: 446 VDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTM 505

Query: 177 IAASARNGNLEL 188
           + A   + N+ L
Sbjct: 506 LGACRLHRNVHL 517



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 10/144 (6%)

Query: 264 PMDEYTFSTMLSGIAGL----SALTWGMLIHSCVIKQGL--DASIVVASALLDMYSKCGQ 317
           P+  +T  ++L  ++ L    +A+  G   H+  +K GL         +ALL MY++ G 
Sbjct: 7   PLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGL 66

Query: 318 VEIADSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           V  A  +F      R ++VTWN M++   ++G   + ++    +  +  ++PD VTF + 
Sbjct: 67  VADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVAL-GVRPDGVTFASA 125

Query: 376 LAACSHTDIPFDKVSEYFESMTKD 399
           L ACS  ++  D   E    + KD
Sbjct: 126 LPACSRLEL-LDVGREMHAYVIKD 148


>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 787

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 146/473 (30%), Positives = 248/473 (52%), Gaps = 34/473 (7%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           TAL+  Y ++  L  A ++  E+P+ + VSW +L++ + Q G  ++A++L+ ++      
Sbjct: 316 TALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCR 375

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            +   F+S L AC  L  L+ G  IH++ +K +    V +++ LIDMY KC  + DA  +
Sbjct: 376 PNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMI 435

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F  +  K+I+ WNS                               +I+G +    + +A 
Sbjct: 436 FYSLPQKNIVCWNS-------------------------------LISGYSNNSKMVEAE 464

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   MP+ N +SWNSI++GY    +  +AL  F  M +      E TFS++L   A L 
Sbjct: 465 ELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLC 524

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           +L  G ++H+ +IK G+  SI V +AL DMY+K G ++ +  +F  + ++N V W AMI 
Sbjct: 525 SLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQ 584

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G A NG   + I LFE + +   + P+  TFL +L ACSH+ +  +    YFE M +  G
Sbjct: 585 GLAENGFAEESILLFEDMISA-GITPNEQTFLAILFACSHSGL-VEHAMHYFE-MMQACG 641

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I P  +H   M+ ++ + G +  A+ ++ ++   S    W ALLSA     + ++   +A
Sbjct: 642 ISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAA 701

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
             + +L+ D+   YV+L N+Y S G W  A+ MR  M+   L+K+ GCSW+++
Sbjct: 702 KRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQI 754



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 159/319 (49%), Gaps = 32/319 (10%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           T ++    K  S+ DA +++ + P  SV  + ++I+G+V +   + AL +F E+    + 
Sbjct: 183 TTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVS 242

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL-ERGVVIANCLIDMYGKCGSVEDAIG 160
            +  +  S + AC   G   L M+I    +K +L ++ + + N LI +Y + G  + A  
Sbjct: 243 PNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARR 302

Query: 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220
           +F EM  +D++SW ++                               ++  A+ GD+E A
Sbjct: 303 MFDEMEVRDVVSWTAL-------------------------------LDVYAELGDLEGA 331

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             +L  MP  N  SW +++  +  +    EA+ L+ +M +     +   FS++L   A L
Sbjct: 332 RRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASL 391

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
             L  G  IH+  +K     ++ V+SAL+DMY KC Q+  A  +F SL +KN+V WN++I
Sbjct: 392 QDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLI 451

Query: 341 TGYARNGDLTKVIELFEQL 359
           +GY+ N  + +  ELF+++
Sbjct: 452 SGYSNNSKMVEAEELFKKM 470



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 97/208 (46%), Gaps = 4/208 (1%)

Query: 153 GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIA 212
           G+  D + V G        +++ ++    + G++  A      +P    +SY  +++ + 
Sbjct: 134 GAFRDCVSVVGA---ASPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALM 190

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
           + G + DA+ +    P  +   + +++ G+V      +AL +F EM S  V  +E T  +
Sbjct: 191 KRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVS 250

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
           ++    G       M I    +K   LD ++ V ++L+ +Y + G  + A  MF  +  +
Sbjct: 251 VIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVR 310

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQL 359
           ++V+W A++  YA  GDL     + +++
Sbjct: 311 DVVSWTALLDVYAELGDLEGARRVLDEM 338


>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
 gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
          Length = 733

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 170/614 (27%), Positives = 287/614 (46%), Gaps = 114/614 (18%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSG-FLSNVFVSTALMGFYRKINSLADAHK 59
           PN++ +  ++   ++L W    + +H  + KSG F  N  V ++ +  Y K   + DA  
Sbjct: 128 PNQFTIPMIVATCAELLWLEEGKYIHGLVSKSGLFAENSAVGSSFVYMYAKCGVMEDASL 187

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER---SEIYADAYSFTSALAACGQ 116
           MF EI    VVSW +L+ GYV +    K L    E+ R        ++ +      ACG 
Sbjct: 188 MFDEIVVRDVVSWTALVIGYVHNDDSEKGLECLCEMRRIGGDGEKVNSRTLEGGFQACGN 247

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           LG++  G  +H   VK  L    V+ + L+ MY KCG+VE+A   F +++DKD+ SW SV
Sbjct: 248 LGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVDKDVFSWTSV 307

Query: 177 IAASARNGNLELAFGFLHRLPN-----------PDTISYNEVINGIA------------- 212
           I   AR       FGF++   N           PD I  + ++ G               
Sbjct: 308 IGVCAR-------FGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSMMVREGKAFHG 360

Query: 213 ----------------------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVN----RN 246
                                 +FG +  A  +   +   +  SWN+++ GYV+    +N
Sbjct: 361 LIVRRNYVLDDTVNNALLSMYCKFGTLNPAEKLFDGVHEWSKESWNTMVFGYVHCYIIKN 420

Query: 247 RVPE--------------------------------------------------ALHLFG 256
            V E                                                  A+ LF 
Sbjct: 421 SVDEDVSIANSLIDMYGKGGNLSIAWKMFCRTQRDVVTWNTLISSYTHSGHYAEAITLFD 480

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           EM S+ +  +  T   +LS    L +L  G ++H  + + G + ++ + +AL+DMY+KCG
Sbjct: 481 EMISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSLGTALVDMYAKCG 540

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           Q+E +  +F S+  K++++WN MI+GY  +GD    +E+F+Q++   +++P+++TFL++L
Sbjct: 541 QLEQSRELFNSMKEKDVISWNVMISGYGLHGDANSAMEVFQQMEQ-SNVKPNAITFLSLL 599

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
           +AC+H     D+  + F+ M + Y IKP ++H   M  L+G+ G +  A+ +++ +    
Sbjct: 600 SACTHAGY-VDEGKQLFDRM-QYYSIKPNLKHFACMADLLGRSGNLQEAEDLVQSMPICP 657

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
            G VW  LLSA    +++++    A   I+ + ++D  Y+ML N+Y S G WD A   R 
Sbjct: 658 DGGVWGTLLSACKIHNEIEIGIRVAKCAIESDPENDGYYIMLSNMYGSMGKWDEAERARE 717

Query: 497 FMRERGLRKEAGCS 510
            M+ERG+ K AG S
Sbjct: 718 LMKERGIGKRAGWS 731



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 119/541 (21%), Positives = 222/541 (41%), Gaps = 111/541 (20%)

Query: 26  HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKY 85
           H  I+ +G  +NVF+S+ L+  Y        +  +F    Q     WNS+I  +  +G Y
Sbjct: 52  HALIITTGNANNVFISSKLISLYASFRKPHSSTYVFDSTNQKDTFLWNSIIKSHFSNGNY 111

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL-ERGVVIANC 144
            KA + ++++       + ++    +A C +L  L+ G  IH  + K  L      + + 
Sbjct: 112 FKAFDFYIQMRYDNTPPNQFTIPMIVATCAELLWLEEGKYIHGLVSKSGLFAENSAVGSS 171

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE----------------- 187
            + MY KCG +EDA  +F E++ +D++SW +++     N + E                 
Sbjct: 172 FVYMYAKCGVMEDASLMFDEIVVRDVVSWTALVIGYVHNDDSEKGLECLCEMRRIGGDGE 231

Query: 188 ------LAFGF--------------LHRLPNPDTISYNEVING-----IAQFGDIEDAIM 222
                 L  GF              LH L     +  ++V+        ++ G++E+A  
Sbjct: 232 KVNSRTLEGGFQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHN 291

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML-------- 274
               +   +  SW S++        + E L+LF +MQ  DV  D    S +L        
Sbjct: 292 SFCQVVDKDVFSWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSMM 351

Query: 275 -------------------------------------------SGIAGLSALTWGML--- 288
                                                       G+   S  +W  +   
Sbjct: 352 VREGKAFHGLIVRRNYVLDDTVNNALLSMYCKFGTLNPAEKLFDGVHEWSKESWNTMVFG 411

Query: 289 -IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR--KNLVTWNAMITGYAR 345
            +H  +IK  +D  + +A++L+DMY K G + IA  MF   CR  +++VTWN +I+ Y  
Sbjct: 412 YVHCYIIKNSVDEDVSIANSLIDMYGKGGNLSIAWKMF---CRTQRDVVTWNTLISSYTH 468

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
           +G   + I LF+++ + + L P+S T + VL+AC H  +P  +  +      K+ G +  
Sbjct: 469 SGHYAEAITLFDEMISEK-LNPNSATLVIVLSACCH--LPSLEKGKMVHQYIKEGGFELN 525

Query: 406 VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465
           V    +++ +  + G++ +++ +   +      + W  ++S  G   D +    SA EV 
Sbjct: 526 VSLGTALVDMYAKCGQLEQSRELFNSMKEKDV-ISWNVMISGYGLHGDAN----SAMEVF 580

Query: 466 K 466
           +
Sbjct: 581 Q 581



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 130/304 (42%), Gaps = 44/304 (14%)

Query: 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175
           Q  +LQ     H+ I+       V I++ LI +Y        +  VF     KD   WNS
Sbjct: 41  QTQTLQSLHKSHALIITTGNANNVFISSKLISLYASFRKPHSSTYVFDSTNQKDTFLWNS 100

Query: 176 VIAASARNGNLELAFGFLHRL------PNPDTISY-------------NEVINGI----- 211
           +I +   NGN   AF F  ++      PN  TI                + I+G+     
Sbjct: 101 IIKSHFSNGNYFKAFDFYIQMRYDNTPPNQFTIPMIVATCAELLWLEEGKYIHGLVSKSG 160

Query: 212 ----------------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
                           A+ G +EDA ++   +   +  SW +++ GYV+ +   + L   
Sbjct: 161 LFAENSAVGSSFVYMYAKCGVMEDASLMFDEIVVRDVVSWTALVIGYVHNDDSEKGLECL 220

Query: 256 GEMQSKDVPMDEYTFSTMLSGI---AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
            EM+      ++    T+  G      L A+  G  +H   +K GL  S VV S+LL MY
Sbjct: 221 CEMRRIGGDGEKVNSRTLEGGFQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMY 280

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
           SKCG VE A + F  +  K++ +W ++I   AR G + + + LF  ++ V D+ PD +  
Sbjct: 281 SKCGNVEEAHNSFCQVVDKDVFSWTSVIGVCARFGFMNECLNLFWDMQ-VDDVYPDGIVV 339

Query: 373 LNVL 376
             +L
Sbjct: 340 SCIL 343


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 152/518 (29%), Positives = 266/518 (51%), Gaps = 11/518 (2%)

Query: 7   FHLLRASSDLGWDTYC-QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65
           F LL  + D   D    ++LH  I       N  +   LM  Y          K+F E+ 
Sbjct: 21  FGLLAKALDQNPDIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMS 80

Query: 66  QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA 125
             +VV +N +I  YV + +Y   L +F E+       D Y++   L AC    +L+ G+ 
Sbjct: 81  DRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLL 140

Query: 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN 185
           IH  ++K  L+  + + N LI MYGKCG + +A  VF EMI KD++SWNS++A  A N  
Sbjct: 141 IHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMR 200

Query: 186 LELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAI---MILSSMPSPNSSSWNSI 238
            + A      + +    PD  +   ++  +A     E+ +    I  ++   N  SWN +
Sbjct: 201 FDDALEICREMEDYGQKPDGCTMASLMPAVANTSS-ENVLYVEKIFVNLERKNLISWNVM 259

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           +  Y+  +   +A+ L+ +M+   V  D  TF+++L     LSAL  G  IH  V K+ L
Sbjct: 260 IRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKL 319

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
             ++++ ++L+DMY++CG ++ A  +F  +  +++ +W ++I+ Y   G     + LF +
Sbjct: 320 CPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTE 379

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           +       PDS+ F+ +L+ACSH+ +  D+   YF+ MT DY I P +EH   ++ L+G+
Sbjct: 380 MLNSGQ-APDSIAFVAILSACSHSGL-LDEGRIYFKQMTDDYRITPRIEHYACLVDLLGR 437

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G V  A  +I+++       VW  LLS+    +++D+  ++A  +++L  +    YV+L
Sbjct: 438 AGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLL 497

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            N+Y   G W   + +R+ M+ + +RK  G S +E+ N
Sbjct: 498 SNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNN 535



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 158/319 (49%), Gaps = 22/319 (6%)

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           K+FV + + +++SWN +I  Y+++    +A++L++++E+  +  DA +F S L ACG L 
Sbjct: 243 KIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLS 302

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           +L LG  IH  + K  L   +++ N LIDMY +CG ++DA  VF  M  +D+ SW S+I+
Sbjct: 303 ALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLIS 362

Query: 179 ASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMP-----S 229
           A    G    A      + N    PD+I++  +++  +  G +++  +    M      +
Sbjct: 363 AYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRIT 422

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
           P    +  ++       RV EA ++  +M    +  +E  ++T+LS     + +  G+L 
Sbjct: 423 PRIEHYACLVDLLGRAGRVDEAYNIIKQMP---IEPNERVWATLLSSCRVFTNMDIGILA 479

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQ----VEIADSMFRSLCRK-----NLVTWNAMI 340
              +++   + S      L ++Y+K G+     EI   M R   RK     N+   N + 
Sbjct: 480 ADNLLQLAPEQSGYYV-LLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVH 538

Query: 341 TGYARNGDLTKVIELFEQL 359
           T  A +    +  E++E+L
Sbjct: 539 TFLAGDTSHPQSKEIYEEL 557



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 92/191 (48%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      +L A  DL      +++H Y+ K     N+ +  +L+  Y +   L DA ++
Sbjct: 286 PDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRV 345

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    V SW SLIS Y  +G+   A+ LF E+  S    D+ +F + L+AC   G L
Sbjct: 346 FDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLL 405

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G     ++   Y +   +    CL+D+ G+ G V++A  +  +M I+ +   W ++++
Sbjct: 406 DEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLS 465

Query: 179 ASARNGNLELA 189
           +     N+++ 
Sbjct: 466 SCRVFTNMDIG 476


>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
 gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 148/481 (30%), Positives = 252/481 (52%), Gaps = 11/481 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV   TAL+  Y +   + +A  +F  +PQ +VVSWN+++  Y  +G+   A  LF  + 
Sbjct: 104 NVVTWTALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRMP 163

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
                 DA S+   LA   + GS+     +  ++     ER V+    ++D   + G V+
Sbjct: 164 ----VRDAGSWNILLATLVRSGSVDKARELFGRMP----ERDVMAWTTMVDGVARSGKVD 215

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           +A  +F  M +++++SWN++I+   RN  ++ A     ++P  D  S N ++ G  Q  D
Sbjct: 216 EARVLFDSMPERNVVSWNAMISGYTRNHRIDEALDLFMKMPERDIASCNIMVTGFIQNKD 275

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           ++ A  +   MP  N  +W +++ GY+   +   AL LF  M       ++ TF   L  
Sbjct: 276 LKRARELFDEMPERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQVTFLGALDA 335

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            + L+AL  G  +H  + K        V SAL+++Y+KCG++ +A  +F     K+L++W
Sbjct: 336 CSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARKLFDLSREKDLISW 395

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           N +I  YA +G   + I L+E+++     +P+ VT++ +L+ACSH+ +  D+  + FESM
Sbjct: 396 NGIIAAYAHHGVGIEAILLYEKMQE-NGYRPNDVTYVVLLSACSHSGL-VDEGLKIFESM 453

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG-SYGVVWRALLSASGACSDLD 455
             D  I    EH   +I L  + G +  A+R+I  L    + G VW ALL    A  +  
Sbjct: 454 VNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNES 513

Query: 456 VARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           +  ++A  +++ E D+   Y +L N+Y S G W  A+ +R+ M  RGL+K+ GCSWIEV 
Sbjct: 514 IGNLAARNLLQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEVA 573

Query: 516 N 516
           N
Sbjct: 574 N 574



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 125/271 (46%), Gaps = 43/271 (15%)

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT- 201
           N LI      G V DA  +F    D D++SW ++++A AR G L  A     R   PD  
Sbjct: 46  NRLIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELFDR---PDAR 102

Query: 202 ---ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
              +++  +++G A+   +++A  +   MP  N  SWN++L  Y    RV +A  LF  M
Sbjct: 103 RNVVTWTALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRM 162

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS-----------IVVASA 307
             +D                   A +W +L+ + V    +D +           ++  + 
Sbjct: 163 PVRD-------------------AGSWNILLATLVRSGSVDKARELFGRMPERDVMAWTT 203

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           ++D  ++ G+V+ A  +F S+  +N+V+WNAMI+GY RN  + + ++LF ++   RD   
Sbjct: 204 MVDGVARSGKVDEARVLFDSMPERNVVSWNAMISGYTRNHRIDEALDLFMKMPE-RD--- 259

Query: 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
             +   N++      +    +  E F+ M +
Sbjct: 260 --IASCNIMVTGFIQNKDLKRARELFDEMPE 288



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 14/237 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+      L A SDL      +Q+H  I K+ F  + FV +ALM  Y K   +  A K+
Sbjct: 324 PNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARKL 383

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +  ++SWN +I+ Y   G   +A+ L+ +++ +    +  ++   L+AC   G +
Sbjct: 384 FDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSGLV 443

Query: 121 QLGMAIHSKIVKYSLERGVVIAN----CLIDMYGKCGSVEDAIGVFGEMIDKDIIS--WN 174
             G+ I   +V    +R + + +    CLID+  + G ++DA  +   +  K      W+
Sbjct: 444 DEGLKIFESMVN---DRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWS 500

Query: 175 SVIAASARNGNLEL----AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           +++     +GN  +    A   L   P+ +  +Y  + N  A  G  ++A  I S M
Sbjct: 501 ALLGGCNAHGNESIGNLAARNLLQAEPD-NAGTYTLLSNIYASAGKWKEAAEIRSEM 556


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 154/506 (30%), Positives = 256/506 (50%), Gaps = 38/506 (7%)

Query: 20  TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM--FVEIPQPSVVSWNSLIS 77
           T  +Q+H  IL +G   + +V   L+    K+N   D + +  F ++  P+   +N+LI 
Sbjct: 60  TQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPFLYNALIR 119

Query: 78  GYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK-IVKYSLE 136
           GY+   + +++   +  + +  +   +++FT+   ACG    + LG  IH + I+     
Sbjct: 120 GYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVGGFG 179

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196
             + + N +IDMY KCG +E    VF EM                               
Sbjct: 180 EDLHVGNSMIDMYIKCGFLECGRKVFDEM------------------------------- 208

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
           PN D IS+ E+I+   + G++E A  +   +P  +  +W  +++G+    +  EA+  F 
Sbjct: 209 PNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFE 268

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ--GLDASIVVASALLDMYSK 314
           +MQ   V  DE T   ++S  A L A  +   I     K   G   S+VV SAL+DMYSK
Sbjct: 269 KMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSK 328

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG V  A  +F+ +  +N+ ++++MI G+A +G +   ++LF+++    +++P+ VTF+ 
Sbjct: 329 CGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKT-EIKPNRVTFIG 387

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           VL ACSH  +  ++  + FE M K YGIKP+ +H   M+ L+G+ G +  A  +++ +  
Sbjct: 388 VLTACSHAGM-VEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPI 446

Query: 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494
             +G VW ALL A       D+A I+A  + +LE      Y++L N+Y S G W+  S +
Sbjct: 447 EPHGGVWGALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTV 506

Query: 495 RNFMRERGLRKEAGCSWIEVENVAAH 520
           R  MR RGLRK    SWIE E    H
Sbjct: 507 RKLMRTRGLRKNPAFSWIESEKGMVH 532



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 15/202 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGF--LSNVFVSTALMGFYRKINSLADAHK 59
           +E  L  ++ A + LG   Y   +     KS F    +V V +AL+  Y K  S+ DA++
Sbjct: 278 DEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYR 337

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  + + +V S++S+I G+   G+   A+ LF E+ ++EI  +  +F   L AC   G 
Sbjct: 338 VFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGM 397

Query: 120 LQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAI------------GVFGEMI 166
           ++ G  I   + K Y ++       C++D+ G+ G +++A             GV+G ++
Sbjct: 398 VEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALL 457

Query: 167 DKDIISWNSVIAASARNGNLEL 188
               I  +  IAA A N   EL
Sbjct: 458 GACRIHKSPDIAAIAANHLFEL 479


>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
 gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 146/501 (29%), Positives = 263/501 (52%), Gaps = 10/501 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALM--GFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H  ++ +G +SN+ V   L+         +L  AHK+F EIP+P V   N ++ G  
Sbjct: 29  KQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSA 88

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           QS K  K ++L+ E+E+  +  D Y+FT  L AC +L     G A H K+V++       
Sbjct: 89  QSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEY 148

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           + N LI  +  CG +  A  +F +      ++W+S+ +  A+ G ++ A      +P  D
Sbjct: 149 VKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKD 208

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +++N +I G  +  +++ A  +       +  +WN++++GYVN     EAL +F EM+ 
Sbjct: 209 QVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRD 268

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVAS----ALLDMYSKC 315
                D  T  ++LS  A L  L  G  +H  +++   + +SI V +    AL+DMY+KC
Sbjct: 269 AGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKC 328

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G ++ A  +FR +  ++L TWN +I G A +      IE+FE+++ ++ + P+ VTF+ V
Sbjct: 329 GSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLK-VWPNEVTFIGV 386

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           + ACSH+    D+  +YF  M   Y I+P ++H   M+ ++G+ G++  A   +  +   
Sbjct: 387 ILACSHSG-RVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIE 445

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
              +VWR LL A     ++++ + +  +++ +  D    YV+L N+Y S G WD    +R
Sbjct: 446 PNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVR 505

Query: 496 NFMRERGLRKEAGCSWIEVEN 516
               +  ++K  G S IE ++
Sbjct: 506 KMFDDTRVKKPTGVSLIEEDD 526



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 187/410 (45%), Gaps = 26/410 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A S L W +     H  +++ GF+ N +V  AL+ F+     L  A ++
Sbjct: 110 PDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASEL 169

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +  +   V+W+S+ SGY + GK  +A+ LF E+     Y D  ++   +  C +   +
Sbjct: 170 FDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMP----YKDQVAWNVMITGCLKCKEM 225

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID----KDIISWNSV 176
                +  +      E+ VV  N +I  Y  CG  ++A+G+F EM D     D+++  S+
Sbjct: 226 DSARELFDRFT----EKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSL 281

Query: 177 IAASARNGNLELAFGFLHRLPNPDTIS---------YNEVINGIAQFGDIEDAIMILSSM 227
           ++A A  G+LE        +    ++S         +N +I+  A+ G I+ AI +   +
Sbjct: 282 LSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGV 341

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
              + S+WN+++ G +  +    ++ +F EMQ   V  +E TF  ++   +    +  G 
Sbjct: 342 KDRDLSTWNTLIVG-LALHHAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGR 400

Query: 288 LIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYAR 345
              S +     ++ +I     ++DM  + GQ+E A     S+    N + W  ++     
Sbjct: 401 KYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKI 460

Query: 346 NGDLTKVIELFEQLKTVR-DLQPDSVTFLNVLAACSHTDIPFDKVSEYFE 394
            G++       E+L ++R D   D V   N+ A+    D    KV + F+
Sbjct: 461 YGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWD-GVQKVRKMFD 509


>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
          Length = 766

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 151/556 (27%), Positives = 283/556 (50%), Gaps = 45/556 (8%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +++ L   +RA ++LG     +Q+H + LKS   S++ V  AL+  Y K   + D   +F
Sbjct: 151 DQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLF 210

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL--ERSEIYADAYSFTSALAACGQLGS 119
             I    ++SW S+I+G+ Q G   +AL +F ++  E S  + + + F SA  ACG +GS
Sbjct: 211 ERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSH-HPNEFHFGSAFRACGAVGS 269

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            + G  IH   +KY L+R + +   L DMY +  +++ A   F  +   D++SWNS++ A
Sbjct: 270 WEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNA 329

Query: 180 SARNGNLELAFGFLHRLPN----PDTISY------------------------------- 204
            +  G L  A      + +    PD I+                                
Sbjct: 330 YSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGD 389

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +++  A+  D+  A+ +   +   +  +WNSILT     N   E L LF  +  
Sbjct: 390 VSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNK 449

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            +  +D  + + +LS  A L        +H+   K GL    ++++ L+D Y+KCG ++ 
Sbjct: 450 SEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDD 509

Query: 321 ADSMFRSLCR-KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           A  +F  +   +++ +W+++I GYA+ G   + ++LF +++++  ++P+ VTF+ VL AC
Sbjct: 510 AMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEALDLFSRMRSL-GIRPNHVTFIGVLTAC 568

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           S      ++   Y+  M  +YGI PT EHC  ++ L+ + G++  A   I ++ F    +
Sbjct: 569 SRVGF-VNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDII 627

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W+ LL+AS   +D+++ + +A  ++ ++      YV+LCN+Y + GNW+  + ++  MR
Sbjct: 628 MWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMR 687

Query: 500 ERGLRKEAGCSWIEVE 515
             G++K  G SW++++
Sbjct: 688 TSGVKKSPGKSWVKLK 703



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 190/384 (49%), Gaps = 41/384 (10%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           N  +   L+  Y +  +   A ++F E+P  + VSW S+I+ +VQ+G+   AL LF  + 
Sbjct: 85  NTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSML 144

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           RS   AD ++  SA+ AC +LG +  G  +H+  +K      +++ N L+ MY K G V+
Sbjct: 145 RSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVD 204

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL-------PNP---------- 199
           D   +F  + DKD+ISW S+IA  A+ G    A     ++       PN           
Sbjct: 205 DGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRAC 264

Query: 200 ---DTISYNEVINGI--------------------AQFGDIEDAIMILSSMPSPNSSSWN 236
               +  Y E I+G+                    A+F +++ A +    + +P+  SWN
Sbjct: 265 GAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWN 324

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           SI+  Y     + EAL LF EM+   +  D  T   +L    G  AL  G LIHS ++K 
Sbjct: 325 SIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKL 384

Query: 297 GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
           GLD  + V ++LL MY++C  +  A  +F  +  +++VTWN+++T  A++    +V++LF
Sbjct: 385 GLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLF 444

Query: 357 EQLKTVRDLQPDSVTFLNVLAACS 380
             L    +   D ++  NVL+A +
Sbjct: 445 SLLNK-SEPSLDRISLNNVLSASA 467



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 177/391 (45%), Gaps = 42/391 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+      RA   +G   Y +Q+H   +K     +++V  +L   Y +  +L  A   
Sbjct: 252 PNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVA 311

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I  P +VSWNS+++ Y   G   +AL LF E+  S +  D  +    L AC    +L
Sbjct: 312 FYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDAL 371

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IHS +VK  L+  V + N L+ MY +C  +  A+ VF E+ D+D+++WNS++ A 
Sbjct: 372 YHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTAC 431

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQF---------------------- 214
           A++ + E        L    P+ D IS N V++  A+                       
Sbjct: 432 AQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDR 491

Query: 215 -------------GDIEDAIMILSSMPSPNSS-SWNSILTGYVNRNRVPEALHLFGEMQS 260
                        G ++DA+ +   M +     SW+S++ GY       EAL LF  M+S
Sbjct: 492 MLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEALDLFSRMRS 551

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQV- 318
             +  +  TF  +L+  + +  +  G   +S +  + G+  +    S ++D+ ++ G++ 
Sbjct: 552 LGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLT 611

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           E A+ + +     +++ W  ++     + D+
Sbjct: 612 EAANFIDQMPFEPDIIMWKTLLAASKMHNDM 642



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 169/389 (43%), Gaps = 53/389 (13%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYS-------LERGVVIANCLIDMYGKCGSVEDAI 159
           + + ++AC +L SL  G  +H  +V  S       L    V+ N LI MYG+C + + A 
Sbjct: 47  YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSAR 106

Query: 160 GVFGEMIDKDIISWNSVIAASARNGNLELAFGFL-------------------------- 193
            VF EM  ++ +SW SVIAA  +NG    A G                            
Sbjct: 107 QVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 166

Query: 194 ----------HRLPNP---DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                     H L +    D I  N ++   ++ G ++D  M+   +   +  SW SI+ 
Sbjct: 167 DVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIA 226

Query: 241 GYVNRNRVPEALHLFGEM--QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           G+  +    EAL +F +M  +    P +E+ F +       + +  +G  IH   IK  L
Sbjct: 227 GFAQQGFEMEALQVFRKMIVEGSHHP-NEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRL 285

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
           D  + V  +L DMY++   ++ A   F  +   +LV+WN+++  Y+  G L++ + LF +
Sbjct: 286 DRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSE 345

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           ++    L+PD +T   +L AC   D  +        S     G+   V  C S++ +  +
Sbjct: 346 MRD-SGLRPDGITVRGLLCACVGRDALYH--GRLIHSYLVKLGLDGDVSVCNSLLSMYAR 402

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSA 447
             ++  A  +  E+      V W ++L+A
Sbjct: 403 CSDLSSAMDVFHEIKDQDV-VTWNSILTA 430


>gi|225437951|ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415,
           mitochondrial-like [Vitis vinifera]
          Length = 743

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 149/483 (30%), Positives = 267/483 (55%), Gaps = 10/483 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV   T+++  Y +  ++ + + +F ++P+ +VVSW ++I G+  +G Y++AL LF+E++
Sbjct: 230 NVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALLLFLEMK 289

Query: 97  RS-EIYADAYSFTSALAACGQLGSLQLGMAIHSKIV----KYSLERGVVIANCLIDMYGK 151
            + ++  +  +F S   AC  +G   LGM  H+ ++     Y    G +  + LI MY  
Sbjct: 290 GNYDMKPNDETFISLAYACAGIGFPHLGMQFHAHLIINCWDYDDYDGRLFKS-LIHMYSM 348

Query: 152 CGSVEDAIGVF-GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVING 210
            G ++ A  +F    +  +  S NS+I    R G LE A      +P  D IS+  +ING
Sbjct: 349 FGFMDFAWYIFFRNSMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMING 408

Query: 211 IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
               G I  A  + ++MP  ++ +W  +++G+V      EA +LF EM+ K V     TF
Sbjct: 409 YFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTF 468

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
           S +L     ++ L  G   H  ++K   +  +++ ++L+ MY+KCG++  A S+F  +  
Sbjct: 469 SILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMIS 528

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
           ++L++WN+MI G++ +G  ++ +++FE + T     P+SVTFL +L+ACSH  +  ++  
Sbjct: 529 RDLISWNSMIMGFSHHGLTSEALKVFEAMLT-SGTHPNSVTFLGILSACSHAGL-LNQGW 586

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG- 449
           E F++M+  + I+P +EH   M+ L+G+ G+V  A+  I +L F     +W ALL   G 
Sbjct: 587 ELFDAMSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKLPFEPDLTIWGALLGVCGF 646

Query: 450 ACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGC 509
              +  VAR +A  +++L+  +   +V+LCN++ S G       +R  M  +G+RK  GC
Sbjct: 647 GMINTGVARRAAKRLLELDPLNAPAHVVLCNIHASIGQRAEEGQLRKEMGLKGVRKVPGC 706

Query: 510 SWI 512
           SWI
Sbjct: 707 SWI 709



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 169/337 (50%), Gaps = 14/337 (4%)

Query: 33  GFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF 92
           G L  V   T+L+  + K   + +A  +F  +P+ +VV++N+++SGYVQ G+   A   F
Sbjct: 71  GVLDRVVCWTSLLSKFSKNGFIDEARALFEIMPERNVVTYNAMLSGYVQCGRLSDACRFF 130

Query: 93  VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC 152
            E+    +     S+TS L  CG   + ++G A   ++     ER VV  N ++    + 
Sbjct: 131 EEMPERNV----VSWTSLL--CGLANAGRIGEA--RELFNVMPERNVVSWNSMLVGLIRS 182

Query: 153 GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIA 212
           G +E+A  VF EM  K  +SWN +IA  A +  +E A      + + + +++  +I+G  
Sbjct: 183 GQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNVVTWTSMISGYC 242

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK-DVPMDEYTFS 271
           + G++++   +   MP  N  SW +++ G+       EAL LF EM+   D+  ++ TF 
Sbjct: 243 RAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALLLFLEMKGNYDMKPNDETFI 302

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIV---VASALLDMYSKCGQVEIADSM-FRS 327
           ++    AG+     GM  H+ +I    D       +  +L+ MYS  G ++ A  + FR+
Sbjct: 303 SLAYACAGIGFPHLGMQFHAHLIINCWDYDDYDGRLFKSLIHMYSMFGFMDFAWYIFFRN 362

Query: 328 LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
               N  + N+MI GY R G L K   LF+ +  VRD
Sbjct: 363 SMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIP-VRD 398



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 144/302 (47%), Gaps = 43/302 (14%)

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           + R+A ++  E+    +      +TS L+   + G +    A+   +     ER VV  N
Sbjct: 56  RLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIMP----ERNVVTYN 111

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS 203
            ++  Y +CG + DA   F EM +++++SW S++   A  G +  A    + +P  + +S
Sbjct: 112 AMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMPERNVVS 171

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
           +N ++ G+ + G +E+A  + + MP  +  SWN ++ GY   +R+ EA  LF  M  ++V
Sbjct: 172 WNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNV 231

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
                T+++M+SG                                   Y + G V+    
Sbjct: 232 ----VTWTSMISG-----------------------------------YCRAGNVQEGYC 252

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F+ +  +N+V+W AMI G+A NG   + + LF ++K   D++P+  TF+++  AC+   
Sbjct: 253 LFQKMPERNVVSWTAMIGGFAWNGFYKEALLLFLEMKGNYDMKPNDETFISLAYACAGIG 312

Query: 384 IP 385
            P
Sbjct: 313 FP 314



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 89/176 (50%), Gaps = 10/176 (5%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           LL A+  + +    +Q HC ++K+ F  ++ +  +L+  Y K   + DA+ +F ++    
Sbjct: 471 LLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRD 530

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           ++SWNS+I G+   G   +AL +F  +  S  + ++ +F   L+AC   G L  G  +  
Sbjct: 531 LISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFD 590

Query: 129 KI-----VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
            +     ++  LE  V    C++++ G+ G VE+A     ++  + D+  W +++ 
Sbjct: 591 AMSDVFAIQPQLEHYV----CMVNLLGRAGKVEEAEEFISKLPFEPDLTIWGALLG 642


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 138/482 (28%), Positives = 252/482 (52%), Gaps = 33/482 (6%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           +V + T L+  Y K N +  A ++F ++ + S+VSW +++SGYVQ G Y ++L LF ++ 
Sbjct: 301 DVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMR 360

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
              +  D  +  + L+AC  L    LG ++H+ IV Y +     + N L+D+Y KCG ++
Sbjct: 361 FENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLD 420

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           +A+  F                                +LP     S+N +++G  + G 
Sbjct: 421 EALRTF-------------------------------EQLPCKSAASWNSMLDGFCRSGG 449

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           ++ A    + +P  +  SWN+++  YV  +   E+  +F +MQS +V  D+ T  ++LS 
Sbjct: 450 VDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSS 509

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            A + AL  G+ ++  + K  +    ++ +AL+DMY KCG VE+A  +F  +  KN+  W
Sbjct: 510 CAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVW 569

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
            AM+  YA  G   + I+L+ +++  R ++PD VTF+ +LAACSH  +  D+  +YF  +
Sbjct: 570 TAMMAAYAMEGQALEAIDLYLEMEE-RGVKPDHVTFIALLAACSHGGL-VDEGYKYFNKL 627

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
              Y I PT+ H   M+ L+G+ G +    + I  +       +W +L+ A  +  ++++
Sbjct: 628 RSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVEL 687

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           A  +  ++I+++  ++  +V+L N+Y   G WD  S +R  + E G+ K+ G + IE   
Sbjct: 688 AEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNG 747

Query: 517 VA 518
           V 
Sbjct: 748 VV 749



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 130/505 (25%), Positives = 237/505 (46%), Gaps = 45/505 (8%)

Query: 7   FHLLRASSDLGWDTYC-QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65
           FH L  +    +D     ++H  ILK GF  N  ++  LMG Y K   L +  ++F ++ 
Sbjct: 136 FHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMT 195

Query: 66  QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA 125
              V+SWN++IS YV  G YR+AL+LF E+  S +  D  +  S ++ C +L  L++G  
Sbjct: 196 HRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKR 255

Query: 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN 185
           +H  IV   L     + NCL+DMY KCG +++A G+     + ++               
Sbjct: 256 LHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEV--------------- 300

Query: 186 LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245
                         D + +  +++G  +   I+ A  +   M   +  SW ++++GYV  
Sbjct: 301 --------------DVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQG 346

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
               E+L LF +M+ ++V  DE    T+LS    L     G  +H+ ++  G+     + 
Sbjct: 347 GYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLG 406

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           +ALLD+Y+KCG+++ A   F  L  K+  +WN+M+ G+ R+G + K  + F ++      
Sbjct: 407 NALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIP----- 461

Query: 366 QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGE---- 421
           + D V++  ++ A    D+ F++  E F  M +   +KP      S++    + G     
Sbjct: 462 EKDIVSWNTMVNAYVKHDL-FNESFEIFCKM-QSSNVKPDKTTLISLLSSCAKVGALNHG 519

Query: 422 VWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNL 481
           +W     I +   G   ++  AL+   G C  +++A     ++I+    + +V+  +   
Sbjct: 520 IW-VNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIE---KNVFVWTAMMAA 575

Query: 482 YTSHGNWDVASVMRNFMRERGLRKE 506
           Y   G    A  +   M ERG++ +
Sbjct: 576 YAMEGQALEAIDLYLEMEERGVKPD 600



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 127/263 (48%), Gaps = 8/263 (3%)

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
           +P+  S  +V+  +    +++ A  ILS    P S  WN++L   +      E L  +  
Sbjct: 66  DPEITS--QVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYH 123

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M ++ V +D  TF  ++        +  G  +H  ++K G   +  + + L+ +YSKCG+
Sbjct: 124 MVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGK 183

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           ++    +F  +  +++++WN MI+ Y   G   + ++LF+++  V  + PD +T +++++
Sbjct: 184 LKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEM-LVSGVLPDEITMVSLVS 242

Query: 378 ACSH-TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
            C+   D+   K    +    K + I+ ++ +C  ++ +  + G++  A  ++       
Sbjct: 243 TCAKLKDLEMGKRLHLYIVDNKLW-IRGSLLNC--LVDMYSKCGKMDEAHGLLSRCDESE 299

Query: 437 YGVV-WRALLSASGACSDLDVAR 458
             VV W  L+S     + +D AR
Sbjct: 300 VDVVLWTTLVSGYVKSNKIDKAR 322


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 149/514 (28%), Positives = 262/514 (50%), Gaps = 38/514 (7%)

Query: 7   FHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINS--LADAHKMFVEI 64
            HLL+  S++      +Q+H  +LK+G + +   ++ L+ F    NS  LA A  +F  I
Sbjct: 22  LHLLQRCSNM---EELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRI 78

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
            +P+   WN++I GY  S +  +AL L+  +    +  +AY+F   L AC  + + +   
Sbjct: 79  FRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQ 138

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
            IH+ I+K      +   N L+++Y K G ++ A  +F ++  +D               
Sbjct: 139 QIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD--------------- 183

Query: 185 NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
                           T+S+N +I+G  + G+IE A  I + MP  N  SW S+++G V 
Sbjct: 184 ----------------TVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVG 227

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV 304
             +  EAL+LF  MQ+  + +D     + L   A L  L  G  IH+ + K  ++   ++
Sbjct: 228 AGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL 287

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
              L+DMY+KCG +E A  +FR +  K +  W AMI+GYA +G   + +E F +++T   
Sbjct: 288 GCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTA-G 346

Query: 365 LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424
           ++P+ +TF  +L ACSH  +   +    FESM + +G KP++EH   M+ L+G+ G +  
Sbjct: 347 VEPNQMTFTGILTACSHAGL-VHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKE 405

Query: 425 AQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484
           A+ +I  +       +W ALL+A     +L++ +     +I+++      Y+ L +++ +
Sbjct: 406 AEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAA 465

Query: 485 HGNWDVASVMRNFMRERGLRKEAGCSWIEVENVA 518
            G W+ A+ +R  M+E+G+ K  GCS I V   A
Sbjct: 466 AGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTA 499



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 159/350 (45%), Gaps = 58/350 (16%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKI---------- 51
           N Y    LL+A S +      QQ+H +I+K GF S ++ + +L+  Y K           
Sbjct: 117 NAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLF 176

Query: 52  -----------NSLAD----------AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALN 90
                      NS+ D          A+++F  +P+ +++SW S+ISG V +GK ++ALN
Sbjct: 177 DQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALN 236

Query: 91  LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
           LF  ++ + I  D  +  S L AC  LG L  G  IH+ I K+ +E   ++   LIDMY 
Sbjct: 237 LFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYA 296

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNE 206
           KCG +E+AI VF +M +K +  W ++I+  A +G    A  +  ++      P+ +++  
Sbjct: 297 KCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTG 356

Query: 207 VINGIAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           ++   +  G + +A ++  SM       P+   +  ++        + EA  L   M  K
Sbjct: 357 ILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVK 416

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
                              +A  WG L+++C I   L+    +   L+ +
Sbjct: 417 P------------------NAAIWGALLNACHIHGNLELGKQIGKILIQV 448


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 173/615 (28%), Positives = 294/615 (47%), Gaps = 109/615 (17%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + + L H+L+A  +L         H  I  +GF SNVF+  AL+  Y +  SL +A  +F
Sbjct: 116 DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 175

Query: 62  VEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVEL----------ERSEIYADAYSFT 108
            EI Q     V+SWNS++S +V+S     AL+LF ++          ERS+I     S  
Sbjct: 176 DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII----SIV 231

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM--- 165
           + L ACG L ++     +H   ++      V + N LID Y KCG +E+A+ VF  M   
Sbjct: 232 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 291

Query: 166 --------------------------------IDKDIISWNSVIAASARNG------NLE 187
                                           I  D+++W +VIA  ++ G      N+ 
Sbjct: 292 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 351

Query: 188 LAFGFLHRLPN-------------------------------------------PDTISY 204
               F   LPN                                            D + Y
Sbjct: 352 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVY 411

Query: 205 NEVINGIAQFGDIEDAIMILSSMP--SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
           N +I+  ++    + A  I   +P    N  +W  ++ G+       +AL LF EM S+ 
Sbjct: 412 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 471

Query: 263 --VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK--QGLDASIVVASALLDMYSKCGQV 318
             V  + YT S +L   A L+A+  G  IH+ V++  Q   ++  VA+ L++MYSKCG V
Sbjct: 472 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDV 531

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           + A  +F S+ +K+ ++W +M+TGY  +G  ++ +++F++++      PD +TFL VL A
Sbjct: 532 DTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKA-GFVPDDITFLVVLYA 590

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH  +  D+   YF+SM+ DYG+ P  EH    I L+ + G + +A + ++++      
Sbjct: 591 CSHCGM-VDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTA 649

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
           VVW ALLSA    S++++A  +  +++++  ++D  Y ++ N+Y + G W   + +R+ M
Sbjct: 650 VVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLM 709

Query: 499 RERGLRKEAGCSWIE 513
           ++ G++K  GCSW++
Sbjct: 710 KKSGIKKRPGCSWVQ 724



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 184/413 (44%), Gaps = 97/413 (23%)

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
           P P+V  WN LI  +++ G+   A+N+   + R+    D ++    L ACG+L S + G 
Sbjct: 79  PSPAVW-WNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGS 137

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK---DIISWNSVIAASA 181
           A H  I     E  V I N L+ MY +CGS+E+A  +F E+  +   D+ISWNS+++A  
Sbjct: 138 AFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHV 197

Query: 182 RNGN----LEL---------------------------AFGFLHRLPNPDTISYNEVING 210
           ++ N    L+L                           A G L  +P    +  N + NG
Sbjct: 198 KSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG 257

Query: 211 I--------------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
                          A+ G +E+A+ + + M   +  SWN+++ GY        A  LF 
Sbjct: 258 TFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFK 317

Query: 257 EMQSKDVPMDEYTFS-----------------------------------TMLSGIAGLS 281
            M+ +++P+D  T++                                   ++LS  A L 
Sbjct: 318 NMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLG 377

Query: 282 ALTWGMLIHSCVIKQ----------GLDASIVVASALLDMYSKCGQVEIADSMFR--SLC 329
           A + GM IH+  +K           G D  ++V +AL+DMYSKC   + A S+F    L 
Sbjct: 378 AFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLE 437

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVLAACSH 381
            +N+VTW  MI G+A+ GD    ++LF E +     + P++ T   +L AC+H
Sbjct: 438 ERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAH 490



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 4/200 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL--SNVFVSTALMGFYRKINSLADAH 58
           PN Y +  +L A + L      +Q+H Y+L+      S  FV+  L+  Y K   +  A 
Sbjct: 476 PNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTAR 535

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
            +F  + Q S +SW S+++GY   G+  +AL++F ++ ++    D  +F   L AC   G
Sbjct: 536 HVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCG 595

Query: 119 SLQLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSV 176
            +  G++   S    Y L          ID+  + G ++ A     +M ++   + W ++
Sbjct: 596 MVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVAL 655

Query: 177 IAASARNGNLELAFGFLHRL 196
           ++A   + N+ELA   L++L
Sbjct: 656 LSACRVHSNVELAEHALNKL 675


>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
          Length = 617

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 155/508 (30%), Positives = 257/508 (50%), Gaps = 39/508 (7%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           +L+A S LG+     Q+H  + K+G  S++F+   L+G Y K   L  A ++F  +PQ  
Sbjct: 131 VLKACSRLGFVKGGLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRD 190

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
            VS+NS+I GYV+ G    A  LF  + R     +  S+ S ++   Q            
Sbjct: 191 SVSFNSMIDGYVKRGLIESARELFDLMPRE--VKNLISWNSIISGYAQTSD--------- 239

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
                    GV IA+ L                F EM +KD+ISWNS+I    ++G +E 
Sbjct: 240 ---------GVDIASNL----------------FAEMPEKDLISWNSMIDGYVKHGRIED 274

Query: 189 AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV 248
           A      +P  D +++  +I+G A+ G +  A  +   MP  +  S+NS++ GYV     
Sbjct: 275 AKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQNKYH 334

Query: 249 PEALHLFGEMQSKD-VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307
            EAL +F +M+ +  +  DE T   +LS IA L  L+  M +H  ++++       +  A
Sbjct: 335 MEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVA 394

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           L+DMYSKCG ++ A  +F  +  K++  WNAMI G A +G      ++  Q++  R ++P
Sbjct: 395 LIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIER-RSIKP 453

Query: 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQR 427
           D +TF+ VL ACSH+ +  + +   FE M + + I+P ++H   M+ ++ + G +  A+ 
Sbjct: 454 DDITFVGVLNACSHSGLVKEGLL-CFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKN 512

Query: 428 MIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGN 487
           +I+E+      V+WR  L+A     + +   +    +I   G +   YV+L N+Y S G 
Sbjct: 513 LIQEMPIEPNDVIWRTFLTACNHHKEFETGELVGKHLILQAGYNPSSYVLLSNMYASFGK 572

Query: 488 WDVASVMRNFMRERGLRKEAGCSWIEVE 515
           W     +R  M+ER + K  GCSWIE++
Sbjct: 573 WKDVRRIRTMMKERKIEKIPGCSWIELD 600



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 156/322 (48%), Gaps = 44/322 (13%)

Query: 63  EIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQL 122
           E+  P +  WN++I  +      ++AL LF  +  + +  D +S +  L AC +LG ++ 
Sbjct: 86  EVEDPFL--WNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKG 143

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR 182
           G+ IH  + K  L   + + NCLI +Y KCG +  A  +F  M  +D +S+NS+I    +
Sbjct: 144 GLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVK 203

Query: 183 NGNLELAFGFLHRLPN--PDTISYNEVINGIAQFGD-IEDAIMILSSMPSPNSSSWNSIL 239
            G +E A      +P    + IS+N +I+G AQ  D ++ A  + + MP  +  SWNS++
Sbjct: 204 RGLIESARELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEKDLISWNSMI 263

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            GYV   R+ +A  LF  M  +DV                   +TW  +I          
Sbjct: 264 DGYVKHGRIEDAKDLFDAMPRRDV-------------------VTWATMI---------- 294

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
                     D Y+K G V  A ++F  +  +++V++N+M+ GY +N    + +E+F  +
Sbjct: 295 ----------DGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQNKYHMEALEIFSDM 344

Query: 360 KTVRDLQPDSVTFLNVLAACSH 381
           +    L PD  T + VL+A + 
Sbjct: 345 EKESHLSPDETTLVIVLSAIAQ 366



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 9/234 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  L  +L A + LG  +    +H YI++  F     +  AL+  Y K  S+  A  +
Sbjct: 352 PDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLV 411

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I   S+  WN++I G    G    A ++ +++ER  I  D  +F   L AC   G +
Sbjct: 412 FEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLV 471

Query: 121 QLGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G+     +  K+ +E  +    C++D+  + GS+E A  +  EM I+ + + W + + 
Sbjct: 472 KEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTFLT 531

Query: 179 ASARNGNLELA-----FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           A   +   E          L    NP   SY  + N  A FG  +D   I + M
Sbjct: 532 ACNHHKEFETGELVGKHLILQAGYNPS--SYVLLSNMYASFGKWKDVRRIRTMM 583



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 115/267 (43%), Gaps = 46/267 (17%)

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE----LAFGFLHRLPNPDT 201
           I + G+C + ED   +   +I   +I          +N NL     LAF      P P  
Sbjct: 19  IQLLGRCKTSEDVSKIHARLITTGLI----------KNSNLSTRIVLAFA---ASPRPYL 65

Query: 202 ISYNEVI------NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
             +  ++         +  G++ED  +            WN+++  + +     +AL LF
Sbjct: 66  AEFARLVFREYHVCSSSPGGEVEDPFL------------WNAVIKSHSHGKDPKQALLLF 113

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
             M    V +D+++ S +L   + L  +  G+ IH  + K GL + + + + L+ +Y KC
Sbjct: 114 CLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQIHGILRKTGLCSDLFLQNCLIGLYLKC 173

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL-- 373
           G +  A  +F  + +++ V++N+MI GY + G +    ELF       DL P  V  L  
Sbjct: 174 GCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIESARELF-------DLMPREVKNLIS 226

Query: 374 --NVLAACSHTDIPFDKVSEYFESMTK 398
             ++++  + T    D  S  F  M +
Sbjct: 227 WNSIISGYAQTSDGVDIASNLFAEMPE 253


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 147/536 (27%), Positives = 283/536 (52%), Gaps = 42/536 (7%)

Query: 29  ILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKA 88
           I ++ F  ++FV TAL+  Y +  S  DA ++F  + Q ++++W+++I+ +   G   +A
Sbjct: 287 ISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEA 346

Query: 89  LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
           L  F  +++  I  +  +F S L        L+    IH  I ++ L+    + N L+++
Sbjct: 347 LRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNV 406

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIA----ASARNGNLELAFGFLHRLPNPDTISY 204
           YG+C S +DA  VF ++   ++ISWNS+I         +  L+L      +   PD +++
Sbjct: 407 YGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNF 466

Query: 205 -----------------------------------NEVINGIAQFGDIEDAIMILSSMPS 229
                                                ++N  A+ G+++ A +IL  M  
Sbjct: 467 MTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDE 526

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
              ++WN ++ GY    R  EAL  + ++Q + +P+D+ TF ++L+     ++L  G +I
Sbjct: 527 QQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMI 586

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           HS  ++ GLD+ ++V +AL +MYSKCG +E A  +F S+  ++ V+WN M+  YA++G+ 
Sbjct: 587 HSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGES 646

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409
            +V++L  +++    ++ + +TF++VL++CSH  +   +  +YF S+  D GI+   EH 
Sbjct: 647 EEVLKLIRKMEQ-EGVKLNGITFVSVLSSCSHAGL-IAEGCQYFHSLGHDRGIEVKTEHY 704

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469
             ++ L+G+ G++  A++ I ++      V W +LL A     DLD  +++A ++++L+ 
Sbjct: 705 GCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDP 764

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAHSSNIR 525
            +    V+L N+Y+  G+W  A+ +R  M  R ++K  G S I+V+N   H   +R
Sbjct: 765 GNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKN-KVHEFRVR 819



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/507 (26%), Positives = 225/507 (44%), Gaps = 88/507 (17%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY-VQSG 83
           +H   L+ GF  N  V+TAL+  Y K  +L DA  +F E+ + +VV+WN+++  Y +Q  
Sbjct: 80  VHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGC 139

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
            ++ A+ LF  +    + A+  +F + L +     +L+ G  IHS + +      V +  
Sbjct: 140 CWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNT 199

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA---SARNGNLELAFGFLHRLP--- 197
            L++ Y KCGS+ DA  VF  M  + + +WNS+I+A   S R+G    AF    R+    
Sbjct: 200 ALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGE---AFFIFQRMQQEG 256

Query: 198 ----------------NPDTISYNE--------------------VINGIAQFGDIEDAI 221
                           NP+T+ + +                    +I   A+    EDA 
Sbjct: 257 ERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAA 316

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   M   N  +W++I+T + +     EAL  F  MQ + +  +  TF ++L+G    S
Sbjct: 317 QVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPS 376

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L     IH  + + GLD +  + +AL+++Y +C   + A ++F  L   NL++WN+MI 
Sbjct: 377 GLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIG 436

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            Y +       ++LF  ++  + +QPD V F+ +L AC+                   +G
Sbjct: 437 IYVQCERHDDALQLFRTMQQ-QGIQPDRVNFMTILGACT----------------IGSHG 479

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
               + H C                  + E G G   +V  +L++      +LDV     
Sbjct: 480 RTRKLVHQC------------------VEESGLGGSPLVQTSLVNMYAKAGELDV----- 516

Query: 462 AEVIKLEGDSDYV--YVMLCNLYTSHG 486
           AEVI  E D   +  + +L N Y  HG
Sbjct: 517 AEVILQEMDEQQITAWNVLINGYALHG 543



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 177/374 (47%), Gaps = 49/374 (13%)

Query: 47  FYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYS 106
            Y +  SL DA   F +I   +VVSWN +IS Y     +++AL LF  +    +  +A +
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERG----VVIANCLIDMYGKCGSVEDAIGVF 162
             + L +CG    L+ G+ +H+     SLERG     ++A  L++MYGKCG++ DA  VF
Sbjct: 61  LVAVLNSCGSFRELRDGILVHA----LSLERGFFQNTLVATALLNMYGKCGTLLDAQSVF 116

Query: 163 GEMIDKDIISWNSVIAASARNG--------------------NLELAFGFLHRLPNPDTI 202
            EM +K++++WN+++   +  G                    N+      L+ + +PD +
Sbjct: 117 EEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDAL 176

Query: 203 SYNE--------------------VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGY 242
              +                    ++N   + G + DA  +   MP  +  +WNS+++ Y
Sbjct: 177 RKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAY 236

Query: 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
               R  EA  +F  MQ +    D  TF ++L        L  G  +   + +   +  +
Sbjct: 237 SISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDL 296

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
            V +AL+ MY++C   E A  +F  + + NL+TW+A+IT +A +G   + +  F  ++  
Sbjct: 297 FVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQ- 355

Query: 363 RDLQPDSVTFLNVL 376
             + P+ VTF+++L
Sbjct: 356 EGILPNRVTFISLL 369



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 161/392 (41%), Gaps = 41/392 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      LL   +         ++H  I + G      +  AL+  Y +  S  DA  +
Sbjct: 360 PNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTV 419

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++  P+++SWNS+I  YVQ  ++  AL LF  +++  I  D  +F + L AC      
Sbjct: 420 FDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHG 479

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +    +H  + +  L    ++   L++MY K G ++ A  +  EM ++ I +WN +I   
Sbjct: 480 RTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGY 539

Query: 181 ARNGNLELAFGFLHRLP---------------------------------------NPDT 201
           A +G    A     +L                                        + D 
Sbjct: 540 ALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDV 599

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           I  N + N  ++ G +E+A  I  SMP  ++ SWN +L  Y       E L L  +M+ +
Sbjct: 600 IVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQE 659

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWG-MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            V ++  TF ++LS  +    +  G    HS    +G++        L+D+  + G+++ 
Sbjct: 660 GVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQE 719

Query: 321 ADSMFRSL-CRKNLVTWNAMITGYARNGDLTK 351
           A+     +     +VTW +++       DL +
Sbjct: 720 AEKYISKMPLEPGIVTWASLLGACRVQKDLDR 751



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 137/291 (47%), Gaps = 17/291 (5%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H  + +SG   +  V T+L+  Y K   L  A  +  E+ +  + +WN LI+GY   G+
Sbjct: 485 VHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGR 544

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
            R+AL  + +L+   I  D  +F S L AC    SL  G  IHS  V+  L+  V++ N 
Sbjct: 545 SREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNA 604

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP----D 200
           L +MY KCGS+E+A  +F  M  +  +SWN ++ A A++G  E     + ++       +
Sbjct: 605 LTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLN 664

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            I++  V++  +  G I +      S+         +   G      + + L   G++Q 
Sbjct: 665 GITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGC-----LVDLLGRAGKLQE 719

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
            +  + +        GI     +TW  L+ +C +++ LD   + A  LL++
Sbjct: 720 AEKYISKMPLE---PGI-----VTWASLLGACRVQKDLDRGKLAAGKLLEL 762



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 2/170 (1%)

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G + DA+     + + N  SWN +++ Y +     EAL LF  M  + V  +  T   +L
Sbjct: 6   GSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVL 65

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
           +       L  G+L+H+  +++G   + +VA+ALL+MY KCG +  A S+F  +  KN+V
Sbjct: 66  NSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVV 125

Query: 335 TWNAMITGYARNGDLTKV-IELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           TWNAM+  Y+  G   K+ +ELF ++  +  ++ + +TFLNVL +    D
Sbjct: 126 TWNAMLGVYSLQGCCWKLAVELFTRM-LLEGVKANVITFLNVLNSVVDPD 174



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 108/213 (50%), Gaps = 7/213 (3%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H   ++ G  S+V V  AL   Y K  S+ +A ++F  +P  S VSWN ++  Y Q 
Sbjct: 584 KMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQH 643

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA-IHSKIVKYSLERGVVI 141
           G+  + L L  ++E+  +  +  +F S L++C   G +  G    HS      +E     
Sbjct: 644 GESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEH 703

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLE---LAFGFLHRLP 197
             CL+D+ G+ G +++A     +M ++  I++W S++ A     +L+   LA G L  L 
Sbjct: 704 YGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLEL- 762

Query: 198 NPDTISYNEVINGI-AQFGDIEDAIMILSSMPS 229
           +P   S + V++ I ++ GD ++A  +  +M S
Sbjct: 763 DPGNSSASVVLSNIYSERGDWKNAAKLRRAMAS 795



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 7/149 (4%)

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370
           MYS+CG +  A + F  +  +N+V+WN MI+ Y+      + + LF  +  +  + P+++
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAM-LLEGVAPNAI 59

Query: 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
           T + VL +C       D +  +  S+ + +     V    +++ + G+ G +  AQ +  
Sbjct: 60  TLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLV--ATALLNMYGKCGTLLDAQSVFE 117

Query: 431 ELGFGSYGVVWRALL---SASGACSDLDV 456
           E+   +  V W A+L   S  G C  L V
Sbjct: 118 EMAEKNV-VTWNAMLGVYSLQGCCWKLAV 145


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 159/546 (29%), Positives = 265/546 (48%), Gaps = 43/546 (7%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           LL     + +  + + +H   +K G  SN+ +   L+  Y       DA  +F  +P+  
Sbjct: 267 LLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERD 326

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           ++SWNS+++ YVQ G+   AL +F E+   +   +  +FTSALAAC        G  +H 
Sbjct: 327 LISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNGKILHG 386

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE- 187
            +V   L+  ++I N LI  YGKC  + +A  VF  M   D ++WN++I   A N  L  
Sbjct: 387 FVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELNE 446

Query: 188 --LAFGFLHR------------------LPNPDTISY------NEVINGI---------- 211
              AF  +                    L + D I Y      + V+ G           
Sbjct: 447 AVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTVVTGFDLDQHVQSSL 506

Query: 212 ----AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
               A+ GD+  +  I   +    SS WN+I+          EAL L   M+S  +  D+
Sbjct: 507 ITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVVRMRSAGIEFDQ 566

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
           + FST LS  A L+ L  G  +H   IK G +    + +A +DMY KCG+++ A  +   
Sbjct: 567 FNFSTALSVAADLAMLEEGQQLHGSTIKLGFELDHFIINAAMDMYGKCGELDDALRILPQ 626

Query: 328 LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387
              ++ ++WN +I+  AR+G   K  E F  +  +  ++P+ V+F+ +L+ACSH  +  D
Sbjct: 627 PTDRSRLSWNTLISISARHGQFHKAKETFHDMLKL-GVKPNHVSFVCLLSACSHGGL-VD 684

Query: 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
           +   Y+ SMT  YGI+P +EHC  MI L+G+ G +  A+  I E+      +VWR+LL++
Sbjct: 685 EGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSGRLVEAEAFITEMPIPPNDLVWRSLLAS 744

Query: 448 SGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEA 507
                +LD+ R +A  +++L+   D  YV+  N++ + G W+    +R  M    ++K+ 
Sbjct: 745 CRIYRNLDLGRKAAKHLLELDPSDDSAYVLYSNVFATIGRWEDVEDVRGQMGAHKIQKKP 804

Query: 508 GCSWIE 513
             SW++
Sbjct: 805 AHSWVK 810



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 232/465 (49%), Gaps = 43/465 (9%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q H + +K G + +VFV T+ + FY     +++A KMF E+P  +VVSW SL+  Y  +G
Sbjct: 80  QFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSYSDNG 139

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
             ++ +N +  +    I  +  +    +++CG L  + LG  +    +K+ LE  V  AN
Sbjct: 140 SKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQLLGHALKFGLETKVSAAN 199

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH--RLPNP-- 199
            LI M+G CG + +A  +F EM ++D ISWNS+I+A+A+N   E +F + H  RL +   
Sbjct: 200 SLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEI 259

Query: 200 ---------------DTISYNEVINGIA--------------------QFGDIEDAIMIL 224
                          D + + + ++G+A                      G  +DA +I 
Sbjct: 260 NYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIF 319

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             MP  +  SWNS+L  YV   R   AL +F EM      ++  TF++ L+        T
Sbjct: 320 RRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFT 379

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G ++H  V+  GL   +++ + L+  Y KC ++  A  +F+ + + + VTWNA+I G+A
Sbjct: 380 NGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFA 439

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC-SHTDIPFDKVSEYFESMTKDYGIK 403
            N +L + +  F+ ++       D +T +N+L +C +H D+    +  +  ++   + + 
Sbjct: 440 NNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTVVTGFDLD 499

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSAS 448
             V+   S+I +  + G++  +  +  +L F +   VW A+++A+
Sbjct: 500 QHVQ--SSLITMYAKCGDLHSSSYIFDQLVFKT-SSVWNAIIAAN 541



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 111/477 (23%), Positives = 215/477 (45%), Gaps = 45/477 (9%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           Y K   +  A  +F  + + +  SWN ++SGYV+ G Y +A+  F ++    I    +  
Sbjct: 2   YSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMI 61

Query: 108 TSALAACGQLGSL-QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
            S + AC +   + + G   H   +K  L   V +    +  Y   G V +A  +F EM 
Sbjct: 62  ASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMP 121

Query: 167 DKDIISWNSVIAASARNG----------------------NLELAF---GFL------HR 195
           D++++SW S++ + + NG                      N+ L     GFL      H+
Sbjct: 122 DRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQ 181

Query: 196 L--------PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
           L              + N +I      GDI +A  I + M   ++ SWNSI++       
Sbjct: 182 LLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTL 241

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307
             E+   F  M+     ++  T S +LS    +  L WG  +H   +K GL+++I + + 
Sbjct: 242 HEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNT 301

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           LL +YS  G+ + A+ +FR +  ++L++WN+M+  Y ++G     +++F ++  ++  + 
Sbjct: 302 LLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKK-EI 360

Query: 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQR 427
           + VTF + LAAC   D  F    +         G++  +    ++I   G+  ++  A++
Sbjct: 361 NYVTFTSALAAC--LDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKK 418

Query: 428 MIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484
           + + +      V W AL+      ++L+ A ++A ++++    S   Y+ + N+  S
Sbjct: 419 VFQRMP-KLDKVTWNALIGGFANNAELNEA-VAAFKLMREGSTSGVDYITIVNILGS 473



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370
           MYSK G++  A  +F  +  +N  +WN M++GY R G   + +  F  +  +  ++P   
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGI-GIKPSGF 59

Query: 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
              +++ AC+ + I   K    F       G+   V    S +      G V  AQ+M  
Sbjct: 60  MIASLVTACNKSSI-MAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFN 118

Query: 431 EL 432
           E+
Sbjct: 119 EM 120


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 173/615 (28%), Positives = 294/615 (47%), Gaps = 109/615 (17%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + + L H+L+A  +L         H  I  +GF SNVF+  AL+  Y +  SL +A  +F
Sbjct: 9   DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 68

Query: 62  VEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVEL----------ERSEIYADAYSFT 108
            EI Q     V+SWNS++S +V+S     AL+LF ++          ERS+I     S  
Sbjct: 69  DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII----SIV 124

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM--- 165
           + L ACG L ++     +H   ++      V + N LID Y KCG +E+A+ VF  M   
Sbjct: 125 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 184

Query: 166 --------------------------------IDKDIISWNSVIAASARNG------NLE 187
                                           I  D+++W +VIA  ++ G      N+ 
Sbjct: 185 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 244

Query: 188 LAFGFLHRLPN-------------------------------------------PDTISY 204
               F   LPN                                            D + Y
Sbjct: 245 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVY 304

Query: 205 NEVINGIAQFGDIEDAIMILSSMP--SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
           N +I+  ++    + A  I   +P    N  +W  ++ G+       +AL LF EM S+ 
Sbjct: 305 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 364

Query: 263 --VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK--QGLDASIVVASALLDMYSKCGQV 318
             V  + YT S +L   A L+A+  G  IH+ V++  Q   ++  VA+ L++MYSKCG V
Sbjct: 365 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDV 424

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           + A  +F S+ +K+ ++W +M+TGY  +G  ++ +++F++++      PD +TFL VL A
Sbjct: 425 DTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKA-GFVPDDITFLVVLYA 483

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH  +  D+   YF+SM+ DYG+ P  EH    I L+ + G + +A + ++++      
Sbjct: 484 CSHCGM-VDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTA 542

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
           VVW ALLSA    S++++A  +  +++++  ++D  Y ++ N+Y + G W   + +R+ M
Sbjct: 543 VVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLM 602

Query: 499 RERGLRKEAGCSWIE 513
           ++ G++K  GCSW++
Sbjct: 603 KKSGIKKRPGCSWVQ 617



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 4/200 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL--SNVFVSTALMGFYRKINSLADAH 58
           PN Y +  +L A + L      +Q+H Y+L+      S  FV+  L+  Y K   +  A 
Sbjct: 369 PNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTAR 428

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
            +F  + Q S +SW S+++GY   G+  +AL++F ++ ++    D  +F   L AC   G
Sbjct: 429 HVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCG 488

Query: 119 SLQLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSV 176
            +  G++   S    Y L          ID+  + G ++ A     +M ++   + W ++
Sbjct: 489 MVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVAL 548

Query: 177 IAASARNGNLELAFGFLHRL 196
           ++A   + N+ELA   L++L
Sbjct: 549 LSACRVHSNVELAEHALNKL 568



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 67/123 (54%), Gaps = 8/123 (6%)

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
           +D +T   +L     L +   G   H  +   G ++++ + +AL+ MYS+CG +E A  +
Sbjct: 8   LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 67

Query: 325 FRSLCRK---NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-----DSVTFLNVL 376
           F  + ++   ++++WN++++ + ++ +    ++LF ++  +   +P     D ++ +N+L
Sbjct: 68  FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 127

Query: 377 AAC 379
            AC
Sbjct: 128 PAC 130


>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 144/481 (29%), Positives = 252/481 (52%), Gaps = 11/481 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV   TAL+  Y +   + +A  +F  +P+ +VVSWN+++  Y  +G+   A  LF  + 
Sbjct: 101 NVVTWTALLSGYARARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGMP 160

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
                 DA S+   LAA  + G++     +  ++     ER V+    +I    + GS +
Sbjct: 161 ----VRDAGSWNILLAALVRSGTMDEARRLFERMP----ERNVMSWTTMISGLARSGSAD 212

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           +A  +F  M +++++SWN++I+  ARN  ++ A      +P  D  S+N +I G  Q  D
Sbjct: 213 EARALFDGMPERNVVSWNAMISGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQNKD 272

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           ++ A  +   MP  N  SW +++ G +  N    AL +F  M    +  ++ TF   +  
Sbjct: 273 LKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDA 332

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            + L+ L+ G  +H  + K        + S+L+ +Y+KCG++ +A  +F     K++++W
Sbjct: 333 GSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKDVISW 392

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           N MI  YA +G   + I L+E+++  R  +P+ VT++ +L+ACSH+ +  D+    FE M
Sbjct: 393 NGMIAAYAHHGAGVEAIALYEKMQENR-YKPNDVTYVGLLSACSHSGL-VDEGLRIFEYM 450

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG-SYGVVWRALLSASGACSDLD 455
            KD  I    EH   +I L  + G +  A+R+I  L    +   VW ALL    A  +  
Sbjct: 451 AKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAHGNES 510

Query: 456 VARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           +  ++A  +++ E D+   Y +L N+Y S G W  A+ +R+ M +RGL+K+ GCSWIE+ 
Sbjct: 511 IGDLAARNLLEAEPDNAGTYTLLSNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIELA 570

Query: 516 N 516
           N
Sbjct: 571 N 571



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 170/380 (44%), Gaps = 55/380 (14%)

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT- 201
           N  I      G V DA  +F    D+D++SW +++AA AR G L  A   LHR   PD  
Sbjct: 43  NRRIAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQLHEASALLHR---PDAR 99

Query: 202 ---ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
              +++  +++G A+   +++A  +   MP  N  SWN++L  Y +  R+  A  LF  M
Sbjct: 100 RNVVTWTALLSGYARARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGM 159

Query: 259 QSKDV--------------PMDE-------------YTFSTMLSGIAGLSALTWGMLIHS 291
             +D                MDE              +++TM+SG+A       G    +
Sbjct: 160 PVRDAGSWNILLAALVRSGTMDEARRLFERMPERNVMSWTTMISGLA-----RSGSADEA 214

Query: 292 CVIKQGLDASIVVA-SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
             +  G+    VV+ +A++  Y++  +++ A  +F ++  +++ +WN MITG+ +N DL 
Sbjct: 215 RALFDGMPERNVVSWNAMISGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLK 274

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP---TVE 407
           K  ELF+++      + + V++  ++  C   +   +   + F  M  D GI+P   T  
Sbjct: 275 KAQELFDEMP-----KRNVVSWTTMMNGCLQGN-ESEMALQVFNGMLVD-GIRPNQVTFL 327

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
                   +    E  +  +MI +  F     +  +L+     C ++ +AR    +V  L
Sbjct: 328 GAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLAR----KVFDL 383

Query: 468 EGDSDYV-YVMLCNLYTSHG 486
            G+ D + +  +   Y  HG
Sbjct: 384 SGEKDVISWNGMIAAYAHHG 403



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 111/237 (46%), Gaps = 14/237 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+      + A S+L   +  QQ+H  I K+ F  + F+ ++LM  Y K   +  A K+
Sbjct: 321 PNQVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKV 380

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +  V+SWN +I+ Y   G   +A+ L+ +++ +    +  ++   L+AC   G +
Sbjct: 381 FDLSGEKDVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLV 440

Query: 121 QLGMAIHSKIVKYSLERGVVIAN----CLIDMYGKCGSVEDAIGVFGEMIDKDIIS--WN 174
             G+ I   + K   ++ + + +    CLID+  + G ++DA  +   +  K   S  W+
Sbjct: 441 DEGLRIFEYMAK---DKSIAVRDEHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWS 497

Query: 175 SVIAASARNGNLEL----AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           +++     +GN  +    A   L   P+ +  +Y  + N  A  G  ++A  I S M
Sbjct: 498 ALLGGCNAHGNESIGDLAARNLLEAEPD-NAGTYTLLSNIYASAGKWKEAAKIRSEM 553


>gi|42562381|ref|NP_174190.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806502|sp|Q1PFQ9.2|PPR62_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g28690, mitochondrial; Flags: Precursor
 gi|332192893|gb|AEE31014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 520

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/495 (29%), Positives = 260/495 (52%), Gaps = 38/495 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H  I+K+GF  ++ +S  L+  + K   L+ A ++F E+P+P++ ++N +ISGY++ 
Sbjct: 54  KKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKH 113

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL-----QLGMAIHSKIVKYSLER 137
           G  ++ L L   +  S   AD Y+ +  L A    GS       L   +H++I+K  +E 
Sbjct: 114 GLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVEL 173

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
             V+   L+D Y K G +E A  VF  M D++++   S+I+     G +E A    +   
Sbjct: 174 DDVLITALVDTYVKSGKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTK 233

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
             D + YN ++ G ++ G+                                  ++ ++  
Sbjct: 234 VKDIVVYNAMVEGFSRSGET------------------------------AKRSVDMYIS 263

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           MQ      +  TF++++   + L++   G  +H+ ++K G+   I + S+LLDMY+KCG 
Sbjct: 264 MQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGG 323

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +  A  +F  +  KN+ +W +MI GY +NG+  + +ELF ++K  R ++P+ VTFL  L+
Sbjct: 324 INDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFR-IEPNYVTFLGALS 382

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           ACSH+ +  DK  E FESM +DY +KP +EH   ++ LMG+ G++ +A    R +     
Sbjct: 383 ACSHSGL-VDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPD 441

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY-VYVMLCNLYTSHGNWDVASVMRN 496
             +W ALLS+     ++++A I+A+E+ KL  D     Y+ L N+Y S+  WD  S +R 
Sbjct: 442 SDIWAALLSSCNLHGNVELASIAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIRE 501

Query: 497 FMRERGLRKEAGCSW 511
            M+ R + K  G SW
Sbjct: 502 VMKRRRISKTIGRSW 516



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 123/265 (46%), Gaps = 41/265 (15%)

Query: 4   YVLFHLLRASSDLGWD-----TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           Y L  +L+AS+  G       + C+ +H  I+K     +  + TAL+  Y K   L  A 
Sbjct: 136 YTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVELDDVLITALVDTYVKSGKLESAR 195

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSG--------------------------------KYR 86
            +F  +   +VV   S+ISGY+  G                                  +
Sbjct: 196 TVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFSRSGETAK 255

Query: 87  KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
           +++++++ ++R+  + +  +F S + AC  L S ++G  +H++I+K  +   + + + L+
Sbjct: 256 RSVDMYISMQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLL 315

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTI 202
           DMY KCG + DA  VF +M +K++ SW S+I    +NGN E A     R+      P+ +
Sbjct: 316 DMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYV 375

Query: 203 SYNEVINGIAQFGDIEDAIMILSSM 227
           ++   ++  +  G ++    I  SM
Sbjct: 376 TFLGALSACSHSGLVDKGYEIFESM 400



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 101/193 (52%), Gaps = 6/193 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      ++ A S L      QQ+H  I+KSG  +++ + ++L+  Y K   + DA ++
Sbjct: 271 PNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRV 330

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ + +V SW S+I GY ++G   +AL LF  ++   I  +  +F  AL+AC   G +
Sbjct: 331 FDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLV 390

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIG---VFGEMIDKDIISWNSV 176
             G  I   + + YS++  +    C++D+ G+ G +  A        E  D DI  W ++
Sbjct: 391 DKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDI--WAAL 448

Query: 177 IAASARNGNLELA 189
           +++   +GN+ELA
Sbjct: 449 LSSCNLHGNVELA 461



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 17/140 (12%)

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTW----------------GMLIHSCVIKQGL 298
           F  +  + +P + Y+   +   ++ LS   +                G  IH+ +IK G 
Sbjct: 6   FTSISPRILPSNHYSTFPLKQNVSSLSPAKYIAGALQEHINSPAPKAGKKIHADIIKTGF 65

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
              + ++  LL ++ KCG +  A  +F  L +  L  +N MI+GY ++G L K + L  Q
Sbjct: 66  QPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKHG-LVKELLLLVQ 124

Query: 359 LKTVRDLQPDSVTFLNVLAA 378
             +    + D  T   VL A
Sbjct: 125 RMSYSGEKADGYTLSMVLKA 144


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 151/528 (28%), Positives = 270/528 (51%), Gaps = 41/528 (7%)

Query: 29  ILKSGFL-SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRK 87
           + K GF  ++V V  AL+  + K   L    ++F  + + +VV W  LI+ Y QSG   +
Sbjct: 179 VFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDE 238

Query: 88  ALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLID 147
           A+ LF+++  +    D Y+ +S L+AC +LGS +LG  +HS  ++  LE    ++  L+D
Sbjct: 239 AVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVD 298

Query: 148 MYGKC---GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE-----LAFGFLHRLPNP 199
           MY K     S+ +A  VF  M   ++++W ++++   + G+ +     L    L+    P
Sbjct: 299 MYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRP 358

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN----SILTGYVNRNRVPEALHLF 255
           + I+Y+ ++   A  GD +    I +     N +  N    ++++ Y     + EA H F
Sbjct: 359 NHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAF 418

Query: 256 GEMQSK--------------------------DVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            ++  K                          ++ +  +TF +++S  A +  LT G  +
Sbjct: 419 DQLYEKNMVSFSGNLDGDGRSNTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRL 478

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H+  +K G  +   + ++L+ MYS+CG +  A  +F  +   N+++W +MI+G A++G  
Sbjct: 479 HALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYA 538

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409
            + +ELF  +     ++P+ VT++ VL+ACSH  +   +  E+F  M K +G+ P +EH 
Sbjct: 539 ARALELFHDM-IAAGVKPNDVTYIAVLSACSHAGL-VKEGKEHFRMMQKHHGLIPRMEHY 596

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469
             M+ L+G+ G V  A   I E+      +VW+ LL A    +++D+  I+A  VI+LE 
Sbjct: 597 ACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEP 656

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
                YV+L NLY   G WD  + +R+ MR++ L KE G SW+ V+N 
Sbjct: 657 QDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNT 704



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 177/380 (46%), Gaps = 40/380 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKIN---SLADA 57
           P++Y L  +L A ++LG     QQLH   L+ G  S+  VS  L+  Y K +   SL +A
Sbjct: 253 PDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNA 312

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSG-KYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
            ++F  +P+ +V++W +L+SGYVQ G +  + + LF ++    I  +  +++S L AC  
Sbjct: 313 REVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACAN 372

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           LG    G  IH+  VK +L    V+ N L+ MY + GS+E+A   F ++ +K+++S++  
Sbjct: 373 LGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGN 432

Query: 177 IAASARNGN--------LELA---FGF------------------LHRLP-----NPDTI 202
           +    R+          +EL    F F                  LH L        D  
Sbjct: 433 LDGDGRSNTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRA 492

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             N +++  ++ G + DA  +   M   N  SW S+++G         AL LF +M +  
Sbjct: 493 IGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAG 552

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-QGLDASIVVASALLDMYSKCGQVEIA 321
           V  ++ T+  +LS  +    +  G      + K  GL   +   + ++D+  + G VE A
Sbjct: 553 VKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDA 612

Query: 322 -DSMFRSLCRKNLVTWNAMI 340
            D +    C+ + + W  ++
Sbjct: 613 LDFINEMPCQVDALVWKTLL 632



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 140/320 (43%), Gaps = 32/320 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      +L+A ++LG     +Q+H + +KS       V  AL+  Y +  S+ +A   
Sbjct: 358 PNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHA 417

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ + ++VS++  + G  +S  Y+       ++ER E+    ++F S ++A   +G L
Sbjct: 418 FDQLYEKNMVSFSGNLDGDGRSNTYQD-----YQIERMELGISTFTFGSLISAAASVGML 472

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H+  +K        I N L+ MY +CG + DA  VF EM D ++ISW S+I+  
Sbjct: 473 TKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGL 532

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
           A++G    A    H +      P+ ++Y  V++  +  G +++       M       P 
Sbjct: 533 AKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPR 592

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  ++        V +AL    EM  +                  + AL W  L+ +
Sbjct: 593 MEHYACMVDLLGRSGLVEDALDFINEMPCQ------------------VDALVWKTLLGA 634

Query: 292 CVIKQGLDASIVVASALLDM 311
           C     +D   + A+ ++ +
Sbjct: 635 CKTHNNMDIGEIAANHVIQL 654



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 138/311 (44%), Gaps = 50/311 (16%)

Query: 120 LQLGMAIHSKIVKYS--LERGVVIANCLIDMYGKCGSVEDAIGVFGEMID--KDIISWNS 175
           + LG A+   +++    LE   V+AN L+ +Y KC +V  A  VF  M    +D++SW +
Sbjct: 63  IHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTA 122

Query: 176 VIAASARNGNLELAFGFLHR------LPNPDTISYNE----------------------- 206
           + +  +RNG    A            LPN  T+                           
Sbjct: 123 MASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKL 182

Query: 207 ------------VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
                       +I+  A+ GD+     +   +       W  ++T Y       EA+ L
Sbjct: 183 GFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVEL 242

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F +M       D+YT S+MLS    L +   G  +HS  ++ GL++   V+  L+DMY+K
Sbjct: 243 FLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAK 302

Query: 315 C--GQ-VEIADSMFRSLCRKNLVTWNAMITGYARNGDL-TKVIELFEQLKTVRDLQPDSV 370
              GQ +  A  +F  + + N++ W A+++GY + G    +V+ LF ++     ++P+ +
Sbjct: 303 SHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLN-EGIRPNHI 361

Query: 371 TFLNVLAACSH 381
           T+ ++L AC++
Sbjct: 362 TYSSMLKACAN 372



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 117/229 (51%), Gaps = 7/229 (3%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           L+ A++ +G  T  Q+LH   LK+GF S+  +  +L+  Y +   L DA ++F E+   +
Sbjct: 462 LISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHN 521

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           V+SW S+ISG  + G   +AL LF ++  + +  +  ++ + L+AC   G ++ G   H 
Sbjct: 522 VISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKE-HF 580

Query: 129 KIVK--YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGN 185
           ++++  + L   +    C++D+ G+ G VEDA+    EM    D + W +++ A   + N
Sbjct: 581 RMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNN 640

Query: 186 L---ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
           +   E+A   + +L   D   Y  + N  A+ G  +    I S M   N
Sbjct: 641 MDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKN 689



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 8/153 (5%)

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSL--CRKNLVTWNAMITGYARNGDLTKVIEL 355
           L+   VVA++LL +YSKC  V  A S+F  +    ++LV+W AM +  +RNG   + + L
Sbjct: 80  LETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRL 139

Query: 356 F-EQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMI 413
           F E L+    L P++ T      AC  +++ F         +    G   T V   C++I
Sbjct: 140 FGETLE--EGLLPNAFTLCAATQACFASEL-FHLAGGAVLGLVFKLGFWGTDVSVGCALI 196

Query: 414 RLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
            +  + G++   +R+   L F    VVW  L++
Sbjct: 197 DMFAKNGDLVAMRRVFDGL-FERTVVVWTLLIT 228


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 143/502 (28%), Positives = 258/502 (51%), Gaps = 42/502 (8%)

Query: 26  HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKY 85
           H  ++K     + F+ T ++    +   +  A  +F E+  P+   +N++I     +  Y
Sbjct: 8   HALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHNSMY 67

Query: 86  RKALNLFVELER-------SE--IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE 136
              ++ + ++ R       SE  I  D ++F   + AC +LG   LG  +H++  K+  +
Sbjct: 68  SLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKK 127

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196
             ++  N LIDMY KC ++ DA  +F EM ++  ISWN +I+                  
Sbjct: 128 SHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIIS------------------ 169

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
                        G  + G +  A  +   MP+    SW +I++GY       +AL +F 
Sbjct: 170 -------------GHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFR 216

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           EMQ   +  DE +  ++L   A L AL  G  IH    + GL     + +AL++MY+KCG
Sbjct: 217 EMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCG 276

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            ++ A  +F  +  +++++W+ MI G A +G + + I +FE++K   +++P+ +TF+ +L
Sbjct: 277 CIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQT-NIKPNGITFVGLL 335

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
           +AC+H    +++   YF++M KD+ I+P +EH  S++ L+G+ G + +A  ++ ++    
Sbjct: 336 SACAHAGF-WEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKP 394

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
              +W +LLS+     +++VA I+   + +LE D    YV+L N+Y   G WD  S MR 
Sbjct: 395 DSKIWGSLLSSCRTHCNIEVAVIAMEHLEELEPDDTGNYVLLSNIYADLGKWDDVSRMRK 454

Query: 497 FMRERGLRKEAGCSWIEVENVA 518
            +R + ++K  GCS IEV NVA
Sbjct: 455 LVRSKRMKKTPGCSLIEVNNVA 476



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 159/351 (45%), Gaps = 58/351 (16%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+    +++A + LG     +Q+H    K G  S++    AL+  Y K ++L DAH +
Sbjct: 93  PDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNL 152

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRK-------------------------------AL 89
           F E+ +   +SWN +ISG+V+ G+ R+                               AL
Sbjct: 153 FDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDAL 212

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
           ++F E++ + I  D  S  S L AC +LG+L+ G  IH    +  L R   I N LI+MY
Sbjct: 213 DVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMY 272

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYN 205
            KCG ++ A  +F +M  +D+ISW+++I   A +G +  A     R+      P+ I++ 
Sbjct: 273 TKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFV 332

Query: 206 EVINGIAQFGDIEDAIMILSSMPS-----PNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +++  A  G  E+ +M   +M       P    + S++       R+ +AL +  +M  
Sbjct: 333 GLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKM-- 390

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
              PM                +  WG L+ SC     ++ +++    L ++
Sbjct: 391 ---PMKP-------------DSKIWGSLLSSCRTHCNIEVAVIAMEHLEEL 425


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 158/529 (29%), Positives = 280/529 (52%), Gaps = 46/529 (8%)

Query: 30  LKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKAL 89
           L S ++ + FV ++ +  Y ++  +  A ++F    + +   WN++I GYVQ+    +A+
Sbjct: 247 LGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAI 306

Query: 90  NLFVELERSEIYA-DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
           +LFV++  SE +  D  +F SAL A  QL  L LG  +H+ I+K S    VVI N +I M
Sbjct: 307 DLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVM 366

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLPNPDTISY 204
           Y +CGS+  +  VF  M+++D+++WN++++A  +NG     L L F    +    D+++ 
Sbjct: 367 YSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTL 426

Query: 205 NEVI---------------------NGI-------------AQFGDIEDAIMIL--SSMP 228
             ++                     +GI             A+ G I  A  +   +S  
Sbjct: 427 TALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDGYLIDMYAKSGLITTAQQLFEKNSXY 486

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             + ++WN+++ GY       E   +F +M  ++V  +  T +++L     +  +  G  
Sbjct: 487 DRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQ 546

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           IH   I+  L+ ++ V +ALLDMYSK G +  A+++F     KN VT+  MI  Y ++G 
Sbjct: 547 IHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGM 606

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
             + + LF  +     ++PDSVTF+ +L+ACS+  +  D+    F+SM ++Y I+P+ EH
Sbjct: 607 GERALSLFHAMLG-SGIKPDSVTFVAILSACSYAGL-VDEGLRIFQSMEREYKIQPSSEH 664

Query: 409 CCSMIRLMGQKGEVWRAQRMIRELG-FGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
            C +  ++G+ G V  A   ++ LG  G+   +W +LL A     + ++ ++ A +++++
Sbjct: 665 YCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFELGKVVANKLLEM 724

Query: 468 EGDSDYV--YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           E  S     +V+L N+Y + GNWD    +R  MR++GL KEAGCSW+EV
Sbjct: 725 EKGSXLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEV 773



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 179/383 (46%), Gaps = 59/383 (15%)

Query: 56  DAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA-DAYSFTSALAAC 114
            A  +F  IP+P+ V WN++I G++ +     AL  +  +  S     D+Y+F+S L AC
Sbjct: 55  QALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKAC 114

Query: 115 GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIG-------------V 161
            Q  SL+LG A+H  +++       ++ N L++MY  C +    +G             V
Sbjct: 115 AQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRV 174

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGI------ 211
           F  M  +++++WN++I+   +   L  AF     +      P  +S+  V   +      
Sbjct: 175 FDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDY 234

Query: 212 -------------------------------AQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                                          A+ G ++ A  I       N+  WN+++ 
Sbjct: 235 DNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIG 294

Query: 241 GYVNRNRVPEALHLFGE-MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           GYV  N   EA+ LF + M+S+   +D+ TF + L+ I+ L  L  G  +H+ ++K    
Sbjct: 295 GYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTI 354

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG-DLTKVIELFEQ 358
             +V+ +A++ MYS+CG +  +  +F ++  +++VTWN M++ + +NG D   ++ +FE 
Sbjct: 355 LQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEM 414

Query: 359 LKTVRDLQPDSVTFLNVLAACSH 381
            K  +    DSVT   +L+  S+
Sbjct: 415 QK--QGFMVDSVTLTALLSLASN 435



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 103/455 (22%), Positives = 199/455 (43%), Gaps = 77/455 (16%)

Query: 1   PNEYVLFHL-LRASSDLGWDTY--------CQQ---------LHCYILKSGFLSNVFVST 42
           P + +LF+  +RAS    +D+Y        C Q         LHC++L+S F S+  V  
Sbjct: 84  PIDALLFYARMRASPSPKFDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYN 143

Query: 43  ALMGFYRK-------------INSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKAL 89
           +L+  Y                N+     ++F  + + +VV+WN++IS YV++ +  +A 
Sbjct: 144 SLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAF 203

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE--RGVVIANCLID 147
            +F  + R  I     SF +   A  ++        ++  +VK   +      + +  I 
Sbjct: 204 KMFRTMMRMGIRPTPVSFVNVFPAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIF 263

Query: 148 MYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-NLELAFGFLHRLPNP----DTI 202
           MY + G V+ A  +F   ++++   WN++I    +N   +E    F+  + +     D +
Sbjct: 264 MYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDV 323

Query: 203 SYNEVINGIAQF-----------------------------------GDIEDAIMILSSM 227
           ++   +  I+Q                                    G I  +  + S+M
Sbjct: 324 TFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNM 383

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
              +  +WN++++ +V      E L L  EMQ +   +D  T + +LS  + L +   G 
Sbjct: 384 LERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGK 443

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR--SLCRKNLVTWNAMITGYAR 345
             H+ +I+ G+     +   L+DMY+K G +  A  +F   S   ++  TWNAMI GY +
Sbjct: 444 QAHAYLIRHGIQFE-GMDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQ 502

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           NG   +   +F ++   ++++P++VT  ++L AC+
Sbjct: 503 NGLSEEGFAVFRKM-IEQNVRPNAVTLASILPACN 536



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 145/314 (46%), Gaps = 29/314 (9%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE--IPQ 66
           LL  +S+L      +Q H Y+++ G +    +   L+  Y K   +  A ++F +     
Sbjct: 429 LLSLASNLRSQEIGKQAHAYLIRHG-IQFEGMDGYLIDMYAKSGLITTAQQLFEKNSXYD 487

Query: 67  PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI 126
               +WN++I+GY Q+G   +   +F ++    +  +A +  S L AC  +G++ LG  I
Sbjct: 488 RDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQI 547

Query: 127 HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNL 186
           H   ++  L + V +   L+DMY K G++  A  VF E ++K+ +++ ++I +  ++G  
Sbjct: 548 HGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMG 607

Query: 187 ELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPNSSSWNS 237
           E A    H +      PD++++  +++  +  G +++ + I  SM       P+S  +  
Sbjct: 608 ERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCC 667

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           +        RV EA                Y F   L G  G +   WG L+ +C I   
Sbjct: 668 VADMLGRVGRVXEA----------------YEFVKGL-GEEGNTFRIWGSLLGACRIHGE 710

Query: 298 LDASIVVASALLDM 311
            +   VVA+ LL+M
Sbjct: 711 FELGKVVANKLLEM 724



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 90/178 (50%), Gaps = 15/178 (8%)

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP-MDEYTFSTM 273
           G    A+ +  S+P P +  WN+I+ G++  N   +AL  +  M++   P  D YTFS+ 
Sbjct: 51  GHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSST 110

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC-------------GQVEI 320
           L   A   +L  G  +H  V++    +S +V ++LL+MYS C                ++
Sbjct: 111 LKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDL 170

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
              +F ++ ++N+V WN MI+ Y +   L +  ++F  +  +  ++P  V+F+NV  A
Sbjct: 171 VRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRM-GIRPTPVSFVNVFPA 227



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 5/193 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  +L A + +G     +Q+H + ++     NVFV TAL+  Y K  ++  A  +
Sbjct: 523 PNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENV 582

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E  + + V++ ++I  Y Q G   +AL+LF  +  S I  D+ +F + L+AC   G +
Sbjct: 583 FAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLV 642

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDA---IGVFGEMIDKDIISWNSV 176
             G+ I   + + Y ++       C+ DM G+ G V +A   +   GE  +   I W S+
Sbjct: 643 DEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRI-WGSL 701

Query: 177 IAASARNGNLELA 189
           + A   +G  EL 
Sbjct: 702 LGACRIHGEFELG 714


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 143/497 (28%), Positives = 255/497 (51%), Gaps = 41/497 (8%)

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F ++ +P++  WN++I G V    +  A++L+  +       + ++    L AC +   
Sbjct: 70  VFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLD 129

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           ++LG+ IHS +VK   +  V +   L+ +Y KC + +DA+ VF ++ DK+++SW ++I  
Sbjct: 130 VRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITG 189

Query: 180 SARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGD------------------- 216
              +G+   A G   +L      PD+ S  +V+   A+ GD                   
Sbjct: 190 YISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRN 249

Query: 217 ----------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                           +E A +I S+MP  +  SW++++ GY       +AL LF +MQS
Sbjct: 250 VFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQS 309

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +++  D YT   +LS  A L AL  G+   S + +    ++ V+ +AL+DMYSKCG V  
Sbjct: 310 ENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQ 369

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F ++ RK+ V WNAM+ G + NG    V  LF  ++    ++PD  TF+ +L  C+
Sbjct: 370 AWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEK-HGIRPDENTFIGLLCGCT 428

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H     ++  ++F +M + + + P++EH   M+ L+G+ G +  A ++I  +      VV
Sbjct: 429 HGGF-VNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVV 487

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W ALL       D  +A     ++I+LE  +   YV L N+Y+ +  W+ A  +R+ M+E
Sbjct: 488 WGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKE 547

Query: 501 RGLRKEAGCSWIEVENV 517
           + ++K   CSWIE++ +
Sbjct: 548 QQIQKIRACSWIEIDGI 564



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 186/409 (45%), Gaps = 46/409 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + +  +L+A +         ++H  ++K+G+  +VFV T+L+  Y K ++  DA K+
Sbjct: 112 PNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKV 171

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +IP  +VVSW ++I+GY+ SG +R+A+  F +L    +  D++S    LAAC +LG  
Sbjct: 172 FDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDC 231

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  I   I    + R V +A  L+DMY KCG++E A  +F  M +KDI+SW+++I   
Sbjct: 232 TSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGY 291

Query: 181 ARNG----NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIM-------------- 222
           A NG     L+L F        PD  +   V++  A  G ++  I               
Sbjct: 292 AFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNP 351

Query: 223 ---------------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                                I ++M   +   WN+++ G            LF  ++  
Sbjct: 352 VLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKH 411

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEI 320
            +  DE TF  +L G      +  G    + + +   L  SI     ++D+  + G +  
Sbjct: 412 GIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNE 471

Query: 321 ADSMFRSLCRK-NLVTWNAMITGYARNGDLTKVIELFEQ-LKTVRDLQP 367
           A  +  ++  K N V W A++ G      L K   L EQ LK + +L+P
Sbjct: 472 AHQLINNMPMKPNAVVWGALLGGCK----LHKDTHLAEQVLKKLIELEP 516



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 117/230 (50%), Gaps = 5/230 (2%)

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
           + D    N ++     FG    + ++ S +  PN   WN+++ G V+++   +A+HL+G 
Sbjct: 45  DQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGS 104

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M+      + +T   +L   A    +  G+ IHS ++K G D  + V ++LL +Y KC  
Sbjct: 105 MRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDN 164

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
            + A  +F  +  KN+V+W A+ITGY  +G   + I  F++L  +  L+PDS + + VLA
Sbjct: 165 FDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEM-GLKPDSFSLVKVLA 223

Query: 378 ACSHTDIPFDKVS-EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426
           AC+      D  S E+ +    D G+   V    S++ +  + G + RA 
Sbjct: 224 ACARLG---DCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERAN 270


>gi|224126355|ref|XP_002329533.1| predicted protein [Populus trichocarpa]
 gi|222870242|gb|EEF07373.1| predicted protein [Populus trichocarpa]
          Length = 693

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/482 (30%), Positives = 263/482 (54%), Gaps = 8/482 (1%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV   T ++  Y +I  + +A+  F  IP+ +VVSW ++ISG+  +G Y +AL LF+E++
Sbjct: 187 NVITWTTMIAGYCRIGDVREAYCFFCRIPERNVVSWTAMISGFTWNGYYGEALLLFLEMK 246

Query: 97  R-SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV---IANCLIDMYGKC 152
           R S I  +  +F S   AC  +    LG  +H++++   LE       IA  LI MY   
Sbjct: 247 RRSNIAPNGETFISLAYACAGMRFHHLGKQLHAQLIINGLEYEDYDGRIAKSLIHMYSLF 306

Query: 153 GSVEDAIGVFGEMIDKDII-SWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGI 211
           G+++ A  VF + ++   + S N +I    R G +E A      +P  D I++  +I G 
Sbjct: 307 GAMDYAHYVFNKNLNSHAVQSCNHMINGYTRIGQVEKARELFDTIPARDNITWTSMIVGY 366

Query: 212 AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271
              G++ +A  +  +MP  +S +W S+++G V      +A      M +   P    T++
Sbjct: 367 FDIGNVSEACYLFENMPDKDSVAWTSMISGLVQNELFLKATSFLLRMLAHGAPPLSSTYA 426

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
            +      ++ L +G  +H+ ++K   D  ++++++L+ MY+KCG++  A S+F ++  +
Sbjct: 427 ILFGAAGAIAHLDFGRQLHNMLMKTLSDCDLILSNSLISMYAKCGEIHDAYSIFTNMIYR 486

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE 391
           +L++WN MI G A +    + +++FE +      +P+SVTFL +L+ACSH  +   +  +
Sbjct: 487 DLISWNTMIMGLAHHALANETLKVFETMLQ-SGTRPNSVTFLGILSACSHAGL-VSQGCK 544

Query: 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG-A 450
            F++M   Y I+P +EH  SMI L+G+ G+V  A+ +I  L F +   +W ALL   G A
Sbjct: 545 LFKAMRDVYAIQPGLEHYISMINLLGRAGKVREAEELILGLPFETNHAIWGALLGVCGVA 604

Query: 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCS 510
             + D+A+ +A  +++L+  +   +V LCN+Y + G       +R  M  +G+RK  GCS
Sbjct: 605 EKNADIAQHAARRLLELDPLNAPAHVALCNIYAACGKHIEEQKLRKEMGLKGVRKVPGCS 664

Query: 511 WI 512
           WI
Sbjct: 665 WI 666



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 124/444 (27%), Positives = 221/444 (49%), Gaps = 33/444 (7%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           T+L+  Y +I  + ++  +F  +P+ ++VS+N ++SGY+Q G+  +A  LF E+    + 
Sbjct: 37  TSLLTKYSRIGFIDESRVLFDIMPERNIVSYNVMLSGYLQCGRLSEARGLFEEMPERNVV 96

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
               S+TS L  CG   + ++  A   ++ K   ER VV  N ++    K   +E+A  V
Sbjct: 97  ----SWTSML--CGLADAGRICEA--RELFKEMPERNVVSWNAMVAGLIKNEDLEEARRV 148

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F E+ +K+++SWN++I   A NG +E A      + + + I++  +I G  + GD+ +A 
Sbjct: 149 FDEIPEKNVVSWNAMIKGFAENGKMEEARVLFEEMEDRNVITWTTMIAGYCRIGDVREAY 208

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK-DVPMDEYTFSTMLSGIAGL 280
                +P  N  SW ++++G+       EAL LF EM+ + ++  +  TF ++    AG+
Sbjct: 209 CFFCRIPERNVVSWTAMISGFTWNGYYGEALLLFLEMKRRSNIAPNGETFISLAYACAGM 268

Query: 281 SALTWGMLIHSCVIKQGL---DASIVVASALLDMYSKCGQVEIADSMF-RSLCRKNLVTW 336
                G  +H+ +I  GL   D    +A +L+ MYS  G ++ A  +F ++L    + + 
Sbjct: 269 RFHHLGKQLHAQLIINGLEYEDYDGRIAKSLIHMYSLFGAMDYAHYVFNKNLNSHAVQSC 328

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE---YF 393
           N MI GY R G + K  ELF+ +        D++T+ +++    + DI    VSE    F
Sbjct: 329 NHMINGYTRIGQVEKARELFDTIPA-----RDNITWTSMIVG--YFDI--GNVSEACYLF 379

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQR-MIRELGFGSYGV--VWRALLSASGA 450
           E+M     +  T     SMI  + Q     +A   ++R L  G+  +   +  L  A+GA
Sbjct: 380 ENMPDKDSVAWT-----SMISGLVQNELFLKATSFLLRMLAHGAPPLSSTYAILFGAAGA 434

Query: 451 CSDLDVARISAAEVIKLEGDSDYV 474
            + LD  R     ++K   D D +
Sbjct: 435 IAHLDFGRQLHNMLMKTLSDCDLI 458



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 141/297 (47%), Gaps = 43/297 (14%)

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           K ++A NL  +      ++    +TS L    ++G +     +   +     ER +V  N
Sbjct: 13  KLQQARNLLDKFPERSRHSRIAHWTSLLTKYSRIGFIDESRVLFDIMP----ERNIVSYN 68

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS 203
            ++  Y +CG + +A G+F EM +++++SW S++   A  G +  A      +P  + +S
Sbjct: 69  VMLSGYLQCGRLSEARGLFEEMPERNVVSWTSMLCGLADAGRICEARELFKEMPERNVVS 128

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
           +N ++ G+ +  D+E+A  +   +P  N  SWN+++ G+    ++ EA  LF EM+ ++V
Sbjct: 129 WNAMVAGLIKNEDLEEARRVFDEIPEKNVVSWNAMIKGFAENGKMEEARVLFEEMEDRNV 188

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
                T++TM++G                                   Y + G V  A  
Sbjct: 189 ----ITWTTMIAG-----------------------------------YCRIGDVREAYC 209

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            F  +  +N+V+W AMI+G+  NG   + + LF ++K   ++ P+  TF+++  AC+
Sbjct: 210 FFCRIPERNVVSWTAMISGFTWNGYYGEALLLFLEMKRRSNIAPNGETFISLAYACA 266



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           + +QLH  ++K+    ++ +S +L+  Y K   + DA+ +F  +    ++SWN++I G  
Sbjct: 440 FGRQLHNMLMKTLSDCDLILSNSLISMYAKCGEIHDAYSIFTNMIYRDLISWNTMIMGLA 499

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK-YSLERGV 139
                 + L +F  + +S    ++ +F   L+AC   G +  G  +   +   Y+++ G+
Sbjct: 500 HHALANETLKVFETMLQSGTRPNSVTFLGILSACSHAGLVSQGCKLFKAMRDVYAIQPGL 559

Query: 140 VIANCLIDMYGKCGSVEDA 158
                +I++ G+ G V +A
Sbjct: 560 EHYISMINLLGRAGKVREA 578


>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 636

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 156/508 (30%), Positives = 262/508 (51%), Gaps = 17/508 (3%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYR--KINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q  C I KSG  ++ FV + ++ F     + SL  A  +F +    +    N++I  Y 
Sbjct: 129 EQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTAMDNPFVCNTMIRAYA 188

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAAC--------GQLGSLQLGMA-----IH 127
           +S    KA+ L+  + R +I +D +++   L AC        G +   QL +A     IH
Sbjct: 189 KSVFPIKAIYLYNFMHRKDIKSDHFTYPFGLKACARVLWCNEGDIKCTQLDIACKGAEIH 248

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
            ++ +  L++   I N L+ +Y +CG ++ A  VF EM +K I SWN +I+A  +  + +
Sbjct: 249 CRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARCVFDEMTEKTITSWNVMISAYDQINDFD 308

Query: 188 LAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
            A   +  +P  + +S+N +I    + G IEDA ++   MP  ++ SWNS++ GYV    
Sbjct: 309 SADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQIKD 368

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307
              AL LF EM+  +V   + T  ++L   A   AL  G  IH  + ++       +++A
Sbjct: 369 YARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNA 428

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK-TVRDLQ 366
           L+DMY+KCG + +A  +F  L  K++  WNAMI   A +G   + + LF  ++ +V   +
Sbjct: 429 LVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGAR 488

Query: 367 PDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426
           P+ VTF+ VL ACSH  +  D+   +F  M  +Y I P ++H   M+ L+ + G +  A 
Sbjct: 489 PNRVTFIGVLIACSHKGL-VDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAH 547

Query: 427 RMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486
            MI+ + F +  V+WR LL A      +D+A  S  ++ K+E   D  YV+L N+Y    
Sbjct: 548 HMIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYAEAQ 607

Query: 487 NWDVASVMRNFMRERGLRKEAGCSWIEV 514
            W+    +R+ M   G+ K+ G S I +
Sbjct: 608 RWNDVERVRSEMIGSGVPKKPGSSHIGI 635



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 112/245 (45%), Gaps = 12/245 (4%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
            +  L  +L A ++ G     +++H  + +  +    ++S AL+  Y K   L  A ++F
Sbjct: 387 TDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLAWEVF 446

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA--DAYSFTSALAACGQLGS 119
            E+    +  WN++I      G   +AL LF  +E S   A  +  +F   L AC   G 
Sbjct: 447 SELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIGVLIACSHKGL 506

Query: 120 LQLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
           +  G    +++V +Y +   +    C++D+  +CG +++A  +   M  + + + W +++
Sbjct: 507 VDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMPFEANSVLWRTLL 566

Query: 178 AASARNGNLELA------FGFLHRLPNPDTISYNEVINGIAQFGDIE--DAIMILSSMPS 229
            A   + +++LA       G +  L + D +  + +     ++ D+E   + MI S +P 
Sbjct: 567 GACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYAEAQRWNDVERVRSEMIGSGVPK 626

Query: 230 PNSSS 234
              SS
Sbjct: 627 KPGSS 631


>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
          Length = 888

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 145/475 (30%), Positives = 248/475 (52%), Gaps = 34/475 (7%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           TAL+  Y ++  L  A ++  E+P+ + VSW +L++ + Q G  ++A++L+ ++      
Sbjct: 316 TALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCR 375

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            +   F+S L AC  L  L+ G  IH++ +K +    V +++ LIDMY KC  + DA  +
Sbjct: 376 PNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMI 435

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F  +  K+I+ W                               N +I+G +    + +A 
Sbjct: 436 FYSLPQKNIVCW-------------------------------NSLISGYSNNSKMVEAE 464

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   MP+ N +SWNSI++GY    +  +AL  F  M +      E TFS++L   A L 
Sbjct: 465 ELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLC 524

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           +L  G ++H+ +IK G+  SI V +AL DMY+K G ++ +  +F  + ++N V W AMI 
Sbjct: 525 SLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQ 584

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G A NG   + I LFE + +   + P+  TFL +L ACSH+ +  +    YFE M +  G
Sbjct: 585 GLAENGFAEESILLFEDMISA-GITPNEQTFLAILFACSHSGL-VEHAMHYFE-MMQACG 641

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I P  +H   M+ ++ + G +  A+ ++ ++   S    W ALLSA     + ++   +A
Sbjct: 642 ISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAA 701

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
             + +L+ D+   YV+L N+Y S G W  A+ MR  M+   L+K+ GCSW+++ +
Sbjct: 702 KRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQIRD 756



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 159/319 (49%), Gaps = 32/319 (10%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           T ++    K  S+ DA +++ + P  SV  + ++I+G+V +   + AL +F E+    + 
Sbjct: 183 TTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVS 242

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL-ERGVVIANCLIDMYGKCGSVEDAIG 160
            +  +  S + AC   G   L M+I    +K +L ++ + + N LI +Y + G  + A  
Sbjct: 243 PNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARR 302

Query: 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220
           +F EM  +D++SW ++                               ++  A+ GD+E A
Sbjct: 303 MFDEMEVRDVVSWTAL-------------------------------LDVYAELGDLEGA 331

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             +L  MP  N  SW +++  +  +    EA+ L+ +M +     +   FS++L   A L
Sbjct: 332 RRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASL 391

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
             L  G  IH+  +K     ++ V+SAL+DMY KC Q+  A  +F SL +KN+V WN++I
Sbjct: 392 QDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLI 451

Query: 341 TGYARNGDLTKVIELFEQL 359
           +GY+ N  + +  ELF+++
Sbjct: 452 SGYSNNSKMVEAEELFKKM 470



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 97/208 (46%), Gaps = 4/208 (1%)

Query: 153 GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIA 212
           G+  D + V G        +++ ++    + G++  A      +P    +SY  +++ + 
Sbjct: 134 GAFRDCVSVVGA---ASPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALM 190

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
           + G + DA+ +    P  +   + +++ G+V      +AL +F EM S  V  +E T  +
Sbjct: 191 KRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVS 250

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
           ++    G       M I    +K   LD ++ V ++L+ +Y + G  + A  MF  +  +
Sbjct: 251 VIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVR 310

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQL 359
           ++V+W A++  YA  GDL     + +++
Sbjct: 311 DVVSWTALLDVYAELGDLEGARRVLDEM 338


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 160/558 (28%), Positives = 274/558 (49%), Gaps = 50/558 (8%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65
           L HLL  +       +  Q+H  I+ + + S  F+   L+  Y K   L  A  +F    
Sbjct: 145 LNHLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITH 204

Query: 66  Q--PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
               ++V+W SLI+       + +AL+LF ++  S  Y + ++F+S L+A      +  G
Sbjct: 205 HHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHG 264

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
             +HS I K+  +  + +   L+DMY KC  +  A+ VF +M +++++SWNS+I     N
Sbjct: 265 QQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHN 324

Query: 184 GNLELAFGFLHRLPN-----PDTISYNEVINGIAQFGDI--------------------- 217
              + A G    +       P+ +S + V++  A  G +                     
Sbjct: 325 NLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYV 384

Query: 218 --------------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
                         ++ + +   +   +  +WN ++ G+V  ++  EA + F  M+ + +
Sbjct: 385 MNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGI 444

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             DE +FST+L   A L+AL  G  IH  +IK G   ++ +  +L+ MY+KCG +  A  
Sbjct: 445 LPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQ 504

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F  +   N+++W AMI+ Y  +G   +VIELFE + +   ++P  VTF+ VL+ACSHT 
Sbjct: 505 VFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLS-EGIEPSHVTFVCVLSACSHT- 562

Query: 384 IPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
               +V E   +F SM K + + P  EH   M+ L+G+ G +  A+R I  +       V
Sbjct: 563 ---GRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSV 619

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W ALL A     +L + R +A  + ++E  +   YV+L N+ T  G  + A+ +R  M  
Sbjct: 620 WGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGV 679

Query: 501 RGLRKEAGCSWIEVENVA 518
            G+RKE GCSWI+V+N+ 
Sbjct: 680 NGVRKEPGCSWIDVKNMT 697



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 4/231 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  +  +L A +++G   + +Q+H  ++K G +   +V  +LM  Y K     +  K+
Sbjct: 345 PNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKL 404

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VV+WN L+ G+VQ+ K+ +A N F  + R  I  D  SF++ L +   L +L
Sbjct: 405 FQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAAL 464

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G AIH +I+K    + + I   LI MY KCGS+ DA  VF  + D ++ISW ++I+A 
Sbjct: 465 HQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAY 524

Query: 181 ARNGN----LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
             +G     +EL    L     P  +++  V++  +  G +E+ +   +SM
Sbjct: 525 QLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSM 575



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 110/227 (48%), Gaps = 9/227 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E     +L +S+ L        +H  I+K G++ N+ +  +L+  Y K  SL DA+++
Sbjct: 446 PDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQV 505

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I   +V+SW ++IS Y   G   + + LF  +    I     +F   L+AC   G +
Sbjct: 506 FEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRV 565

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNSVIA 178
           + G+A  + + K + +  G     C++D+ G+ G +++A      M  K   S W +++ 
Sbjct: 566 EEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLG 625

Query: 179 ASARNGNLELAFGFLHRL----P-NPDTISYNEVINGIAQFGDIEDA 220
           A  + GNL++      RL    P NP   +Y  + N   + G +E+A
Sbjct: 626 ACRKYGNLKMGREAAERLFEMEPYNPG--NYVLLANMCTRSGRLEEA 670


>gi|115488220|ref|NP_001066597.1| Os12g0289800 [Oryza sativa Japonica Group]
 gi|77554360|gb|ABA97156.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649104|dbj|BAF29616.1| Os12g0289800 [Oryza sativa Japonica Group]
          Length = 756

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 150/468 (32%), Positives = 250/468 (53%), Gaps = 10/468 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV     L+  Y +   + +A ++F  +P+ +VV+WN L+SGYVQ  +   A NLF+E+ 
Sbjct: 228 NVISWVNLVNGYCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMP 287

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
                 ++ S+T+ ++   + G LQ    + SK+        V     L+  Y K   ++
Sbjct: 288 EK----NSISWTTMVSGFVRSGKLQEAKDVLSKMPS----DNVGAKTALMHGYLKSNLID 339

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           DA  +F  ++ +D + WN++I+   + G L+ A     ++PN D IS+N +I G AQ G 
Sbjct: 340 DARQLFDGIVVRDAVCWNTMISGYVQCGMLDEAMVLFQQMPNKDMISWNTMIAGCAQGGQ 399

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           I  A  I   M   N+ SWNSI++G+V      EAL  F  M+      D  T++  LS 
Sbjct: 400 IRKAASIFRKMKRRNTVSWNSIISGFVQNGLFVEALQHFMLMRRDAKSADWCTYACCLSA 459

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            A L+ L  G   HS +++ G  +     +AL+  Y+KCG++  A  +F  +  +++V+W
Sbjct: 460 SANLATLQIGRQFHSLLVRTGFISDSSPGNALISAYAKCGRMLEARQVFDEMVVQDIVSW 519

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           NA+I GYA NG+ ++VI +F +++    ++PD +T + VL+ACSH  +  D+   +F SM
Sbjct: 520 NALIDGYASNGNGSEVIAVFREMEA-NSVRPDEITLVVVLSACSHAGL-IDEGLHFFNSM 577

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
            K Y +KP  EH   M+ L+G+ G +  A  +++ +       VW ALL A     + ++
Sbjct: 578 IKLYSLKPVAEHYTCMVDLLGRAGRLREAFELVQGMQIQPNAGVWGALLGACRVHKNHEI 637

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504
           A ++A ++ +LE      YV+L N+    G WD A  +R  M+E  LR
Sbjct: 638 AWLAAEKLFELEPCKASNYVLLSNICVEAGKWDDADKVRVLMKESILR 685



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 182/394 (46%), Gaps = 54/394 (13%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV    A++        LA+A ++F E+P+ + VSWN+++    Q G+   A  LF  + 
Sbjct: 41  NVVSYNAMVSALAHHGRLAEARRLFDEMPRRNPVSWNTMMVACSQHGRVEDARGLFDAMP 100

Query: 97  -RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
            R+E     YS+T  ++   + G L L   +  ++     E+     N +I  Y K G  
Sbjct: 101 ARNE-----YSWTIMVSCYVRAGELTLARELLDRMPG---EKCAACYNTMISGYAKNGRF 152

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARN-------------------------------G 184
           EDAI +  EM   DI+SWNSV+    RN                               G
Sbjct: 153 EDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQFFDEMPDKDLVSWNLMLEGYVRAG 212

Query: 185 NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
           +L++A  F  R+P+P+ IS+  ++NG  Q G + +A  +   MP  N  +WN +L+GYV 
Sbjct: 213 DLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQ 272

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV 304
            ++V  A +LF EM  K    +  +++TM+SG      L     + S +    + A    
Sbjct: 273 FSQVEAAYNLFIEMPEK----NSISWTTMVSGFVRSGKLQEAKDVLSKMPSDNVGAK--- 325

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
            +AL+  Y K   ++ A  +F  +  ++ V WN MI+GY + G L + + LF+Q+     
Sbjct: 326 -TALMHGYLKSNLIDDARQLFDGIVVRDAVCWNTMISGYVQCGMLDEAMVLFQQMPN--- 381

Query: 365 LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
              D +++  ++A C+       K +  F  M +
Sbjct: 382 --KDMISWNTMIAGCAQGG-QIRKAASIFRKMKR 412



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 96/183 (52%), Gaps = 2/183 (1%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV 69
           L AS++L      +Q H  ++++GF+S+     AL+  Y K   + +A ++F E+    +
Sbjct: 457 LSASANLATLQIGRQFHSLLVRTGFISDSSPGNALISAYAKCGRMLEARQVFDEMVVQDI 516

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
           VSWN+LI GY  +G   + + +F E+E + +  D  +    L+AC   G +  G+   + 
Sbjct: 517 VSWNALIDGYASNGNGSEVIAVFREMEANSVRPDEITLVVVLSACSHAGLIDEGLHFFNS 576

Query: 130 IVK-YSLERGVVIANCLIDMYGKCGSVEDAIG-VFGEMIDKDIISWNSVIAASARNGNLE 187
           ++K YSL+       C++D+ G+ G + +A   V G  I  +   W +++ A   + N E
Sbjct: 577 MIKLYSLKPVAEHYTCMVDLLGRAGRLREAFELVQGMQIQPNAGVWGALLGACRVHKNHE 636

Query: 188 LAF 190
           +A+
Sbjct: 637 IAW 639



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 114/228 (50%), Gaps = 14/228 (6%)

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVIN 209
            + G +  A  +F EM  ++++S+N++++A A +G L  A      +P  + +S+N ++ 
Sbjct: 22  ARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMPRRNPVSWNTMMV 81

Query: 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
             +Q G +EDA  +  +MP+ N  SW  +++ YV    +  A  L   M  +        
Sbjct: 82  ACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLARELLDRMPGEKCAA---C 138

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA-SALLDMYSKCGQVEIADSMFRSL 328
           ++TM+SG A       G    +  + Q + A  +V+ +++L    +  ++  +   F  +
Sbjct: 139 YNTMISGYAKN-----GRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQFFDEM 193

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
             K+LV+WN M+ GY R GDL      F ++ +     P+ ++++N++
Sbjct: 194 PDKDLVSWNLMLEGYVRAGDLDVASAFFSRIPS-----PNVISWVNLV 236



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 95/186 (51%), Gaps = 7/186 (3%)

Query: 174 NSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS 233
           N  + + AR+G L  A      +P  + +SYN +++ +A  G + +A  +   MP  N  
Sbjct: 15  NQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMPRRNPV 74

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           SWN+++       RV +A  LF  M ++    +EY+++ M+S       LT   L    +
Sbjct: 75  SWNTMMVACSQHGRVEDARGLFDAMPAR----NEYSWTIMVSCYVRAGELT---LARELL 127

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
            +   +      + ++  Y+K G+ E A ++ + +   ++V+WN+++ G  RN ++++ +
Sbjct: 128 DRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSV 187

Query: 354 ELFEQL 359
           + F+++
Sbjct: 188 QFFDEM 193


>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 605

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 154/543 (28%), Positives = 270/543 (49%), Gaps = 41/543 (7%)

Query: 20  TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79
            + +Q+H  ++K     + +++  L+  Y   N+L+ A  +F ++P P+V  +N LI  Y
Sbjct: 36  NHIKQIHAQLIKCHLHQDPYIAPKLIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAY 95

Query: 80  VQSGKYRKALNLF---VELERSEIYADAYSFTSALAAC-GQLGSLQLGMAIHSKIVKYSL 135
             SG    +L  F   +++    + AD +++   L  C G    L L   +H+ + K   
Sbjct: 96  SLSGNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGF 155

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
              + + N LID Y +CG VE A+ VF  M ++D++SWNS++    +NG+L+ A      
Sbjct: 156 YWDIFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDE 215

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSM---------------------------- 227
           +P  D +S+N +++G  + G+++ A  +   M                            
Sbjct: 216 MPERDRVSWNTMLDGFTKAGEMDKAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLF 275

Query: 228 ---PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
              P  N   W +I++GY  + +V EA++L  EM+   + +D+  F ++L+  A    L 
Sbjct: 276 DRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLG 335

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGY 343
            G  +H   ++     S  V ++ +DMY+KCG V+ A  +F  +   K+LV+WN+MI G+
Sbjct: 336 LGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGF 395

Query: 344 ARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
             +G   K IELF  +  VR+  +PD  TF+ +L AC+H  +  ++   YF SM + YGI
Sbjct: 396 GIHGHGEKSIELFNTM--VREGFKPDRYTFIGLLCACTHAGL-VNEGRGYFYSMQRVYGI 452

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
            P +EH   M+ L+G+ G +  A  ++R + F    ++   LL A    +D+ +A   + 
Sbjct: 453 VPQIEHYGCMVDLLGRGGHLKEAFWLVRSMPFEPNAIILGTLLGACRMHNDVKLATSVSK 512

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAHSS 522
            + KL       + +L N+Y   G+W   + +R  M + G +K +G S IEVE    H  
Sbjct: 513 YLFKLVPSDPGNFSLLSNIYAQSGDWINVAKVRKQMNDEGGQKPSGVSSIEVEE-EVHEF 571

Query: 523 NIR 525
            +R
Sbjct: 572 TVR 574


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 178/603 (29%), Positives = 301/603 (49%), Gaps = 98/603 (16%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQ---QLHCYILKSGFLSNVFVSTALMGFYRK-INSLAD 56
           PN Y     LRA  + G  + C+   Q+H  I K+ + S+V V   L+  Y   ++S  D
Sbjct: 198 PNHYAFGSALRACQESG-PSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSAND 256

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEI-----YADAYSFTSAL 111
           A  +F  I   + +SWNS+IS Y + G    A +LF  +++  +       DA+S  S L
Sbjct: 257 ARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVL 316

Query: 112 AACGQLGSLQLGMAIHSKIVKYSL-ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI 170
                    + G  +H+ +++  L +  V I N L++MY K G++ DA  VF  M++KD 
Sbjct: 317 EE-----GRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDS 371

Query: 171 IS-------------------------------WNSVIAA---------SARNGNLELAF 190
           +S                               WNSVI A          A    L++  
Sbjct: 372 VSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMR 431

Query: 191 G--------FLHRLPNPDTISYNEVINGI-----------------------AQFGDIED 219
           G        F++ L    ++S +EV + I                        + G++ +
Sbjct: 432 GGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNE 491

Query: 220 AIMILSSM-PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
              I + M  + +  SWNS+++GY++   + +A+ L   M  K   +D +TF+T+LS  A
Sbjct: 492 CEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACA 551

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            ++ L  GM +H+C I+  L++ +VV SAL+DMYSKCG+++ A   F  +  +N+ +WN+
Sbjct: 552 SVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNS 611

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           MI+GYAR+G   K ++LF ++  +    PD VTF+ VL+ACSH     ++  E+F+SM++
Sbjct: 612 MISGYARHGHGEKALKLFTRM-MLDGQPPDHVTFVGVLSACSHVGF-VEEGFEHFKSMSE 669

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC-----SD 453
            Y + P VEH   M+ L+G+ G++      I  +      ++WR +L   GAC      +
Sbjct: 670 VYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVL---GACCRANGRN 726

Query: 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
            ++ R +A  +++LE  +   YV+L N+Y S   W+  +  R  M+E  ++KEAGCSW+ 
Sbjct: 727 TELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVT 786

Query: 514 VEN 516
           +++
Sbjct: 787 MKD 789



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 127/437 (29%), Positives = 198/437 (45%), Gaps = 83/437 (18%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           ++LH   +K GF+ N+F+S  L+  Y +I  L  A K+F E+   ++V+W  LISGY Q+
Sbjct: 119 RELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQN 178

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLG--SLQLGMAIHSKIVKYSLERGVV 140
           GK  +A   F ++ R+    + Y+F SAL AC + G    +LG+ IH  I K      VV
Sbjct: 179 GKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVV 238

Query: 141 IANCLIDMYGKC-GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL--- 196
           + N LI MYG C  S  DA  VF  +  ++ ISWNS+I+  +R G+   A+     +   
Sbjct: 239 VCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKE 298

Query: 197 -------PNPDTISY------------------------------NEVINGIAQFGDIED 219
                  PN     +                              N ++N  A+ G I D
Sbjct: 299 GLGFSFKPNDAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIAD 358

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNR-------------------------------- 247
           A  +   M   +S SWNS+++G +++N                                 
Sbjct: 359 ACSVFELMVEKDSVSWNSLISG-LDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEA 417

Query: 248 -VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
            V +A+  F +M      +   TF  +LS ++ LS       IH+ V+K  L     + +
Sbjct: 418 SVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGN 477

Query: 307 ALLDMYSKCGQVEIADSMFRSLCR-KNLVTWNAMITGYARNGDLTKVIEL--FEQLKTVR 363
           ALL  Y KCG++   + +F  +   ++ V+WN+MI+GY  N  L K ++L  F   K  R
Sbjct: 478 ALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQR 537

Query: 364 DLQPDSVTFLNVLAACS 380
               DS TF  +L+AC+
Sbjct: 538 ---LDSFTFATILSACA 551



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 9/190 (4%)

Query: 175 SVIAASARNGNLE-LAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS 233
           S  +  AR  +L+ + +GF+  L        N +IN   + GD+  A  +   M + N  
Sbjct: 112 SCCSEEARELHLQSIKYGFVGNL-----FLSNTLINIYVRIGDLGSAQKLFDEMSNRNLV 166

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI--AGLSALTWGMLIHS 291
           +W  +++GY    +  EA   F +M       + Y F + L     +G S    G+ IH 
Sbjct: 167 TWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHG 226

Query: 292 CVIKQGLDASIVVASALLDMYSKC-GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
            + K    + +VV + L+ MY  C      A S+F  +  +N ++WN++I+ Y+R GD  
Sbjct: 227 LISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAV 286

Query: 351 KVIELFEQLK 360
              +LF  ++
Sbjct: 287 SAYDLFSSMQ 296



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           TF ++++   G         +H   IK G   ++ +++ L+++Y + G +  A  +F  +
Sbjct: 101 TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEM 160

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR-DLQPDSVTFLNVLAACSHT 382
             +NLVTW  +I+GY +NG   +    F  +  VR    P+   F + L AC  +
Sbjct: 161 SNRNLVTWACLISGYTQNGKPDEACARFRDM--VRAGFIPNHYAFGSALRACQES 213


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 155/504 (30%), Positives = 266/504 (52%), Gaps = 14/504 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q +H  +++ GF S+  V  +L+  Y K   + +A K+F  +   S+VSWN L++GY Q 
Sbjct: 271 QSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQL 330

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G Y +AL +   ++ S    +  ++++ LA+C +   +    A+  KI K S    V   
Sbjct: 331 GCYERALEVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISKPS----VTTW 386

Query: 143 NCLIDMYGKCGSVEDAIGVFGEM----IDKDIISWNSVIAASARNGNLELA----FGFLH 194
           N L+  YG+    +D I +F  M    +  D  +   +++  +R G LEL        + 
Sbjct: 387 NTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVK 446

Query: 195 RLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
            L + D    + +I+  ++ G +  A +I + M   +   WNS+++G    +   EA   
Sbjct: 447 LLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDF 506

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F +M+   +   E ++++M++  A LS++  G  IH+ V+K G D ++ V S+L+DMY+K
Sbjct: 507 FKQMRENGMFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAK 566

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG ++ A   F  +  KN+V WN MI GYA+NG   K +ELFE + T +  +PDSVTF+ 
Sbjct: 567 CGNMDDARLFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQ-KPDSVTFIA 625

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           VL  CSH+ +  D+   YF SM  +YGI+P VEH   +I  +G+ G       +I ++ +
Sbjct: 626 VLTGCSHSGL-VDEAIAYFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPY 684

Query: 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494
               ++W  LL+A     + ++   +A  + +L+  +   YV+L N+Y + G    AS +
Sbjct: 685 KDDAILWEVLLAACVVHHNAELGEFAAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAV 744

Query: 495 RNFMRERGLRKEAGCSWIEVENVA 518
           R  M  RG+ K  G SW+  ++ A
Sbjct: 745 RALMSSRGVVKGRGYSWVNHKDGA 768



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 117/398 (29%), Positives = 203/398 (51%), Gaps = 14/398 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  + L  +L A   +      ++ H   +K G   N FV   L+G Y K  S+ADA ++
Sbjct: 140 PTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRL 199

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ---- 116
           F  +  P+ VS+ +++ G  QSG    AL LF  + RS I  D  + +S L AC Q    
Sbjct: 200 FDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAG 259

Query: 117 ----LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS 172
                 +++L  +IH+ +V+   +    + N LIDMY K   +++A+ VF  M    I+S
Sbjct: 260 DYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVS 319

Query: 173 WNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMP 228
           WN ++    + G  E A   L  +      P+ ++Y+ ++    +  D+  A  +   + 
Sbjct: 320 WNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIS 379

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
            P+ ++WN++L+GY       + + LF  MQ ++V  D  T + +LS  + L  L  G  
Sbjct: 380 KPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQ 439

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           +HS  +K  L   + VAS L+DMYSKCGQV IA  +F  +  +++V WN+MI+G A +  
Sbjct: 440 VHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSL 499

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIP 385
             +  + F+Q++    + P   ++ +++ +C+  + IP
Sbjct: 500 NEEAFDFFKQMRE-NGMFPTESSYASMINSCARLSSIP 536



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 27/323 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L   S LG     +Q+H   +K    +++FV++ L+  Y K   +  A  +
Sbjct: 416 PDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQII 475

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  VV WNS+ISG        +A + F ++  + ++    S+ S + +C +L S+
Sbjct: 476 FNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSCARLSSI 535

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH++++K   ++ V + + LIDMY KCG+++DA   F  MI K+I++WN +I   
Sbjct: 536 PQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVKNIVAWNEMIHGY 595

Query: 181 ARNG----NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
           A+NG     +EL    L     PD++++  V+ G +  G +++AI   +SM S     P 
Sbjct: 596 AQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAIAYFNSMESNYGIRPL 655

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  ++       R  E + +  +M  KD                   A+ W +L+ +
Sbjct: 656 VEHYTCLIDALGRAGRFAEVVAVIDKMPYKD------------------DAILWEVLLAA 697

Query: 292 CVIKQGLDASIVVASALLDMYSK 314
           CV+    +     A  L  +  K
Sbjct: 698 CVVHHNAELGEFAAKHLFRLDPK 720



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 172/364 (47%), Gaps = 21/364 (5%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV+   A +    +   LA A  +   +P  + VSWN++I+   +S    +AL ++  + 
Sbjct: 75  NVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGML 134

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           +  +    ++  S L+ACG + +L  G   H   VK  L+    + N L+ MY KCGSV 
Sbjct: 135 QEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVA 194

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP----DTISYNEVINGIA 212
           DA+ +F  M   + +S+ +++   A++G ++ A     R+       D ++ + V+   A
Sbjct: 195 DAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACA 254

Query: 213 Q--FGD--IEDAIMILSSMPS--------PNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
           Q   GD  +  AI +  S+ +         +    NS++  Y    ++ EA+ +F  M S
Sbjct: 255 QACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSS 314

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             +     +++ +++G   L      + +   + + G + + V  S +L    K   V  
Sbjct: 315 VSI----VSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASCIKARDVPS 370

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A +MF  + + ++ TWN +++GY +       IELF +++  +++QPD  T   +L+ CS
Sbjct: 371 ARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQH-QNVQPDRTTLAVILSTCS 429

Query: 381 HTDI 384
              I
Sbjct: 430 RLGI 433



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 1/187 (0%)

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           LP P+  SYN  I+   + GD+  A  +L  MP  N+ SWN+++      +   EAL ++
Sbjct: 71  LPRPNVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMY 130

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
             M  + +    +T +++LS    ++AL  G   H   +K GLD +  V + LL MY+KC
Sbjct: 131 RGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKC 190

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G V  A  +F  +   N V++ AM+ G A++G +   + LF ++ +   ++ D V   +V
Sbjct: 191 GSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARM-SRSAIRVDPVAVSSV 249

Query: 376 LAACSHT 382
           L AC+  
Sbjct: 250 LGACAQA 256



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 11/115 (9%)

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           V+  GL A   + + L+++YS  G    A   FR+L R N+ ++NA I+   R GDL   
Sbjct: 36  VLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAA 95

Query: 353 IELFEQLKTVRDLQPD--SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
            +L  ++       PD  +V++  V+AA + +D P + + E +  M ++ G+ PT
Sbjct: 96  RDLLGRM-------PDRNAVSWNTVIAAVARSDSPGEAL-EMYRGMLQE-GLAPT 141


>gi|356509350|ref|XP_003523413.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Glycine max]
          Length = 678

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 145/475 (30%), Positives = 246/475 (51%), Gaps = 33/475 (6%)

Query: 39  FVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS 98
           F  +AL+  Y     + +A  +F     P  V WNS+ISGYV +G+  +A+NLF  + R+
Sbjct: 236 FSLSALISGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRN 295

Query: 99  EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
            +  DA +  + L+A   L  ++L   +H    K  +   +V+A+ L+D Y KC S  +A
Sbjct: 296 GVQGDASAVANILSAASGLLVVELVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCEA 355

Query: 159 IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIE 218
             +F E                               L   DTI  N +I   +  G IE
Sbjct: 356 CKLFSE-------------------------------LKEYDTILLNTMITVYSNCGRIE 384

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
           DA +I ++MPS    SWNSIL G        EAL++F +M   D+ MD ++F++++S  A
Sbjct: 385 DAKLIFNTMPSKTLISWNSILVGLTQNACPSEALNIFSQMNKLDLKMDRFSFASVISACA 444

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
             S+L  G  +    I  GL++  +++++L+D Y KCG VEI   +F  + + + V+WN 
Sbjct: 445 CRSSLELGEQVFGKAITIGLESDQIISTSLVDFYCKCGFVEIGRKVFDGMVKTDEVSWNT 504

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           M+ GYA NG   + + LF ++ T   + P ++TF  VL+AC H+ +  ++    F +M  
Sbjct: 505 MLMGYATNGYGIEALTLFCEM-TYGGVWPSAITFTGVLSACDHSGL-VEEGRNLFHTMKH 562

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
            Y I P +EH   M+ L  + G    A  +I E+ F +   +W ++L    A  +  + +
Sbjct: 563 SYNINPGIEHFSCMVDLFARAGYFEEAMDLIEEMPFQADANMWLSVLRGCIAHGNKTIGK 622

Query: 459 ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
           ++A ++I+LE ++   Y+ L N+  S G+W+ ++++R  MR++  +K  GCSW +
Sbjct: 623 MAAEQIIQLEPENTGAYIQLSNILASSGDWEGSALVRELMRDKHFQKIPGCSWAD 677



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 192/424 (45%), Gaps = 86/424 (20%)

Query: 6   LFHLLRASSDLGWDTYCQQ----------LHCYIL---KSGFLSNVFVSTALMGFYRKIN 52
           LF  +  ++   W+T  Q           LH +     K+ F  N+ VS      + K  
Sbjct: 58  LFDEMPQTNSFSWNTLVQAHLNSGHTHSALHLFNAMPHKTHFSWNMVVSA-----FAKSG 112

Query: 53  SLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF--VELERSEI-YADAYSFTS 109
            L  AH +F  +P  + + WNS+I  Y + G   KAL LF  + L+ S+I Y DA+   +
Sbjct: 113 HLQLAHSLFNAMPSKNHLVWNSIIHSYSRHGHPGKALFLFKSMNLDPSQIVYRDAFVLAT 172

Query: 110 ALAACGQLGSLQLGMAIHSKIV--KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
           AL AC    +L  G  +H+++      LE   V+ + LI++YGKCG ++ A         
Sbjct: 173 ALGACADSLALNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCGDLDSA--------- 223

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
             I+S+                      + + D  S + +I+G A  G + +A  +  S 
Sbjct: 224 ARIVSF----------------------VRDVDEFSLSALISGYANAGRMREARSVFDSK 261

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
             P +  WNSI++GYV+     EA++LF  M    V  D    + +LS  +GL  +    
Sbjct: 262 VDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRNGVQGDASAVANILSAASGLLVVELVK 321

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSK-------------------------------CG 316
            +H    K G+   IVVAS+LLD YSK                               CG
Sbjct: 322 QMHVYACKAGVTHDIVVASSLLDAYSKCQSPCEACKLFSELKEYDTILLNTMITVYSNCG 381

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           ++E A  +F ++  K L++WN+++ G  +N   ++ + +F Q+  + DL+ D  +F +V+
Sbjct: 382 RIEDAKLIFNTMPSKTLISWNSILVGLTQNACPSEALNIFSQMNKL-DLKMDRFSFASVI 440

Query: 377 AACS 380
           +AC+
Sbjct: 441 SACA 444



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 143/300 (47%), Gaps = 40/300 (13%)

Query: 119 SLQLGMAIHSKIVKYS-LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
           +L+ G  +H   +K   L   V +AN L+ +Y +C +++DA  +F EM   +  SWN+++
Sbjct: 15  TLREGRQLHVAFLKTGILNSSVAVANRLLQLYSRCRNLQDASHLFDEMPQTNSFSWNTLV 74

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
            A   +G+   A    + +P+    S+N V++  A+ G ++ A  + ++MPS N   WNS
Sbjct: 75  QAHLNSGHTHSALHLFNAMPHKTHFSWNMVVSAFAKSGHLQLAHSLFNAMPSKNHLVWNS 134

Query: 238 ILTGYVNRNRVPEALHLFGEMQ---SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
           I+  Y       +AL LF  M    S+ V  D +  +T L   A   AL  G  +H+ V 
Sbjct: 135 IIHSYSRHGHPGKALFLFKSMNLDPSQIVYRDAFVLATALGACADSLALNCGKQVHARVF 194

Query: 295 --KQGLDASIVVASALLDMYSKCGQVEI-------------------------------A 321
               GL+   V+ S+L+++Y KCG ++                                A
Sbjct: 195 VDGMGLELDRVLCSSLINLYGKCGDLDSAARIVSFVRDVDEFSLSALISGYANAGRMREA 254

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACS 380
            S+F S      V WN++I+GY  NG+  + + LF  +  +R+ +Q D+    N+L+A S
Sbjct: 255 RSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAM--LRNGVQGDASAVANILSAAS 312



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 113/218 (51%), Gaps = 10/218 (4%)

Query: 11  RASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVV 70
           R+S +LG     +Q+    +  G  S+  +ST+L+ FY K   +    K+F  + +   V
Sbjct: 446 RSSLELG-----EQVFGKAITIGLESDQIISTSLVDFYCKCGFVEIGRKVFDGMVKTDEV 500

Query: 71  SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI-HSK 129
           SWN+++ GY  +G   +AL LF E+    ++  A +FT  L+AC   G ++ G  + H+ 
Sbjct: 501 SWNTMLMGYATNGYGIEALTLFCEMTYGGVWPSAITFTGVLSACDHSGLVEEGRNLFHTM 560

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNL-- 186
              Y++  G+   +C++D++ + G  E+A+ +  EM    D   W SV+     +GN   
Sbjct: 561 KHSYNINPGIEHFSCMVDLFARAGYFEEAMDLIEEMPFQADANMWLSVLRGCIAHGNKTI 620

Query: 187 -ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMI 223
            ++A   + +L   +T +Y ++ N +A  GD E + ++
Sbjct: 621 GKMAAEQIIQLEPENTGAYIQLSNILASSGDWEGSALV 658


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 155/494 (31%), Positives = 254/494 (51%), Gaps = 41/494 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+  Y L++G      +  +L+    +I S+  AHK+F  IP+P+V  +N LI  Y   
Sbjct: 5   KQIQAYTLRNGIEHTKQLIVSLL----QIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSH 60

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G + +  +L+ ++       + +SFT   +AC  L S Q G  +H+  VK      V   
Sbjct: 61  GPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFAL 120

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
             L+DMY K G +  A   F EM  +D+ +WNS+IA                        
Sbjct: 121 TALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIA------------------------ 156

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK- 261
                  G A+ GD+E A+ +   MP+ N +SW ++++GY    +  +AL +F  M+ + 
Sbjct: 157 -------GYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEET 209

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           ++  +E T +++L   A L AL  G  I       G   ++ V++ALL+MY++CG+++ A
Sbjct: 210 EMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKA 269

Query: 322 DSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAAC 379
             +F  +  R+NL +WN+MI G A +G   + IELF   K +R+   PD VTF+ VL AC
Sbjct: 270 WGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELF--YKMLREGAAPDDVTFVGVLLAC 327

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +H  +  +    +FESM +D+ I P +EH   M+ L+G+ GE+  A  +I  +      V
Sbjct: 328 THGGMVVEG-QHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSV 386

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           VW  LL A      +++A  +A  + +LE  +   YV+L N+Y + G WD  + +R  M+
Sbjct: 387 VWGTLLGACSFHGHVELAEKAAGALFELEPSNPGNYVILSNIYATAGRWDGVARLRKLMK 446

Query: 500 ERGLRKEAGCSWIE 513
              + K AG S+IE
Sbjct: 447 GGKITKAAGYSFIE 460



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 172/395 (43%), Gaps = 66/395 (16%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+    L  A + L      + LH + +KSGF  +VF  TAL+  Y K+  L+ A K 
Sbjct: 80  PNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQ 139

Query: 61  FVEIPQPSVVSWNS-------------------------------LISGYVQSGKYRKAL 89
           F E+    V +WNS                               +ISGY Q+G+Y KAL
Sbjct: 140 FDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKAL 199

Query: 90  NLFVEL-ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
           ++F+ + E +E+  +  +  S L AC  LG+L++G  I          + + ++N L++M
Sbjct: 200 SMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEM 259

Query: 149 YGKCGSVEDAIGVFGEMID--KDIISWNSVIAASARNGN----LELAFGFLHRLPNPDTI 202
           Y +CG ++ A GVF E ID  +++ SWNS+I   A +G     +EL +  L     PD +
Sbjct: 260 YARCGRIDKAWGVF-EEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDV 318

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGE 257
           ++  V+      G + +      SM      +P    +  ++        + EA  L   
Sbjct: 319 TFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILR 378

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY-SKCG 316
           M     PM+               ++ WG L+ +C     ++ +   A AL ++  S  G
Sbjct: 379 M-----PMEP-------------DSVVWGTLLGACSFHGHVELAEKAAGALFELEPSNPG 420

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
              I  +++ +  R + V   A +    + G +TK
Sbjct: 421 NYVILSNIYATAGRWDGV---ARLRKLMKGGKITK 452


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 160/488 (32%), Positives = 252/488 (51%), Gaps = 46/488 (9%)

Query: 29  ILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKA 88
           I+++    + FV   L+     +NS+  A K+F     P+V  + +LI G V S  Y   
Sbjct: 55  IIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDG 114

Query: 89  LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
           ++L+ ++  S +  D+Y+ TS L ACG   +L+ G  +HS+++K  L     I   LI++
Sbjct: 115 IHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIEL 174

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVI 208
           YGKCG+ EDA  VF EM ++D+++   +I            + F H +   DT+ +  +I
Sbjct: 175 YGKCGAFEDARRVFDEMPERDVVASTVMIN-----------YYFDHGIK--DTVCWTAMI 221

Query: 209 NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268
           +G+ + G+                             NR   AL +F  MQ +DV  +E 
Sbjct: 222 DGLVRNGE----------------------------SNR---ALEVFRNMQREDVMPNEV 250

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           T   +LS  + L AL  G  + S + K  ++ +  V  AL++MYS+CG ++ A  +F  +
Sbjct: 251 TIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQM 310

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDK 388
             KN++T+N+MI G+A +G   + +ELF  L   +   P SVTF+ VL ACSH  +  + 
Sbjct: 311 KEKNVITYNSMIMGFALHGKSVEAVELFRGL-IKQGFTPSSVTFVGVLNACSHGGLA-EL 368

Query: 389 VSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSAS 448
             E F SM KDYGI+P +EH   M+ L+G+ G +  A   IR +      V+  ALLSA 
Sbjct: 369 GFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSAC 428

Query: 449 GACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAG 508
               +L++A   A  ++  +      Y++L N Y+S G W  A+ +R  MRE G+ KE G
Sbjct: 429 KIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPG 488

Query: 509 CSWIEVEN 516
           CS IEV N
Sbjct: 489 CSSIEVNN 496



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 156/336 (46%), Gaps = 45/336 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y +  +L+A          +++H  +LK G  SN  +   L+  Y K  +  DA ++
Sbjct: 128 PDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRV 187

Query: 61  FVEIPQPSVVS------------------WNSLISGYVQSGKYRKALNLFVELERSEIYA 102
           F E+P+  VV+                  W ++I G V++G+  +AL +F  ++R ++  
Sbjct: 188 FDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMP 247

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
           +  +    L+AC +LG+LQLG  + S + K+ +E    +   LI+MY +CG +++A  VF
Sbjct: 248 NEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVF 307

Query: 163 GEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPNPDTISYNEVINGIAQFGDIE 218
            +M +K++I++NS+I   A +G     +EL  G + +   P ++++  V+N  +  G  E
Sbjct: 308 EQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAE 367

Query: 219 DAIMILSSMPS-----PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
               I  SM       P    +  ++       R+ EA                Y+F  M
Sbjct: 368 LGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEA----------------YSFIRM 411

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
           +        +  G L+ +C I   L+ +  VA +L+
Sbjct: 412 MK--VAPDHVMLGALLSACKIHGNLELAERVAKSLV 445



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 147/309 (47%), Gaps = 19/309 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  +  +L A S+LG     + +  Y+ K     N FV  AL+  Y +   + +A ++
Sbjct: 247 PNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRV 306

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ + +V+++NS+I G+   GK  +A+ LF  L +      + +F   L AC   G  
Sbjct: 307 FEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLA 366

Query: 121 QLGMAI-HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           +LG  I HS    Y +E  +    C++D+ G+ G +E+A      M +  D +   ++++
Sbjct: 367 ELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLS 426

Query: 179 ASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSM------PS 229
           A   +GNLELA      L    N D+ +Y  + N  +  G  ++A  + ++M        
Sbjct: 427 ACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKE 486

Query: 230 PNSSSW---NSILTGYVNRNRVPEALHLFGEMQ--SKDVPMDEYTFST--MLSGIAGLSA 282
           P  SS    N I    +   R P+   ++ +++  ++ + ++ YT +T  +L  I   S 
Sbjct: 487 PGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEK-SE 545

Query: 283 LTWGMLIHS 291
             W + IHS
Sbjct: 546 KEWALAIHS 554


>gi|116830928|gb|ABK28420.1| unknown [Arabidopsis thaliana]
          Length = 521

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/495 (29%), Positives = 260/495 (52%), Gaps = 38/495 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H  I+K+GF  ++ +S  L+  + K   L+ A ++F E+P+P++ ++N +ISGY++ 
Sbjct: 54  KKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKH 113

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL-----QLGMAIHSKIVKYSLER 137
           G  ++ L L   +  S   AD Y+ +  L A    GS       L   +H++I+K  +E 
Sbjct: 114 GLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVEL 173

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
             V+   L+D Y K G +E A  VF  M D++++   S+I+     G +E A    +   
Sbjct: 174 DDVLITALVDTYVKSGKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTK 233

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
             D + YN ++ G ++ G+                                  ++ ++  
Sbjct: 234 VKDIVVYNAMVEGFSRSGET------------------------------AKRSVDMYIS 263

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           MQ      +  TF++++   + L++   G  +H+ ++K G+   I + S+LLDMY+KCG 
Sbjct: 264 MQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGG 323

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +  A  +F  +  KN+ +W +MI GY +NG+  + +ELF ++K  R ++P+ VTFL  L+
Sbjct: 324 INDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFR-IEPNYVTFLGALS 382

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           ACSH+ +  DK  E FESM +DY +KP +EH   ++ LMG+ G++ +A    R +     
Sbjct: 383 ACSHSGL-VDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPD 441

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY-VYVMLCNLYTSHGNWDVASVMRN 496
             +W ALLS+     ++++A I+A+E+ KL  D     Y+ L N+Y S+  WD  S +R 
Sbjct: 442 SDIWAALLSSCNLHGNVELASIAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIRE 501

Query: 497 FMRERGLRKEAGCSW 511
            M+ R + K  G SW
Sbjct: 502 VMKRRRISKTIGRSW 516



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 123/265 (46%), Gaps = 41/265 (15%)

Query: 4   YVLFHLLRASSDLGWD-----TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           Y L  +L+AS+  G       + C+ +H  I+K     +  + TAL+  Y K   L  A 
Sbjct: 136 YTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVELDDVLITALVDTYVKSGKLESAR 195

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSG--------------------------------KYR 86
            +F  +   +VV   S+ISGY+  G                                  +
Sbjct: 196 TVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFSRSGETAK 255

Query: 87  KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
           +++++++ ++R+  + +  +F S + AC  L S ++G  +H++I+K  +   + + + L+
Sbjct: 256 RSVDMYISMQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLL 315

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTI 202
           DMY KCG + DA  VF +M +K++ SW S+I    +NGN E A     R+      P+ +
Sbjct: 316 DMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYV 375

Query: 203 SYNEVINGIAQFGDIEDAIMILSSM 227
           ++   ++  +  G ++    I  SM
Sbjct: 376 TFLGALSACSHSGLVDKGYEIFESM 400



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 101/193 (52%), Gaps = 6/193 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      ++ A S L      QQ+H  I+KSG  +++ + ++L+  Y K   + DA ++
Sbjct: 271 PNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRV 330

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ + +V SW S+I GY ++G   +AL LF  ++   I  +  +F  AL+AC   G +
Sbjct: 331 FDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLV 390

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIG---VFGEMIDKDIISWNSV 176
             G  I   + + YS++  +    C++D+ G+ G +  A        E  D DI  W ++
Sbjct: 391 DKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDI--WAAL 448

Query: 177 IAASARNGNLELA 189
           +++   +GN+ELA
Sbjct: 449 LSSCNLHGNVELA 461



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  IH+ +IK G    + ++  LL ++ KCG +  A  +F  L +  L  +N MI+GY +
Sbjct: 53  GKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLK 112

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           +G L K + L  Q  +    + D  T   VL A
Sbjct: 113 HG-LVKELLLLVQRMSYSGEKADGYTLSMVLKA 144


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/492 (29%), Positives = 252/492 (51%), Gaps = 44/492 (8%)

Query: 63  EIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQL 122
           E  +P++VSW+++I G+ Q+G  ++AL L   ++ +    +A +  S L AC +L +L L
Sbjct: 5   ENSKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNL 64

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR 182
           G  IH  + ++       + N L+D+Y +C  +  A+ +F     K+++S+N++I     
Sbjct: 65  GKEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCE 124

Query: 183 NGNLELAFGFLHR--LPNPDTISYNEVINGIA---------------------------- 212
           NGN+E A     +  L   DTIS+N +I+G A                            
Sbjct: 125 NGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWN 184

Query: 213 ----------QFGDIEDAIMILSSMP-SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     Q  +I++ I  +      PN  +WN I++G+V       AL LF EMQ+ 
Sbjct: 185 VLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTS 244

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D YT   +L   A L+ +  G  +H+  I+QG +  + + +AL+DMY+KCG ++ A
Sbjct: 245 SLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHA 304

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             ++  +   NLV+ NAM+T YA +G   + I LF  +      +PD VTFL+VL++C H
Sbjct: 305 MQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLG-NGFRPDHVTFLSVLSSCVH 363

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
                +   E+F+ MT  Y + P+++H   ++ L+ + G +  A  +++++      V+W
Sbjct: 364 AG-AVETGHEFFDLMTY-YNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMW 421

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL       ++++  I+A  +I+LE ++   YV+L NLY   G W      R  +++R
Sbjct: 422 GALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDR 481

Query: 502 GLRKEAGCSWIE 513
           G+ K  GCSWIE
Sbjct: 482 GMHKSPGCSWIE 493



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 184/429 (42%), Gaps = 65/429 (15%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  +L A + L      +++H Y+ + GF+SN FV   L+  YR+   +  A K+
Sbjct: 44  PNARTLASVLPACARLQNLNLGKEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKI 103

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA------- 113
           F      +VVS+N++I GY ++G   KA  LF ++E   +  D  S+ S ++        
Sbjct: 104 FSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMEL--VGKDTISWNSMISGYADNLLK 161

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF----GEMIDKD 169
           C  L + QL             ER     N LI  Y  C  +E+   +     G+  + +
Sbjct: 162 CEDLKAAQLAF-------DGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPN 214

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPN----PD---------------TISYNE---- 206
           + +WN +I+    NG+ ELA      +      PD               TI+  +    
Sbjct: 215 VYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHA 274

Query: 207 ----------------VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE 250
                           +++  A+ G I+ A+ + + + +PN  S N++LT Y       E
Sbjct: 275 HSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDE 334

Query: 251 ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLD 310
            + LF  M       D  TF ++LS      A+  G      +    +  S+   + ++D
Sbjct: 335 GIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVD 394

Query: 311 MYSKCGQVEIADSMFRSLCRK-NLVTWNAMITGYARNGDLTKVIELFE-QLKTVRDLQPD 368
           + S+ G+++ A  + + + RK + V W A++ G    G+    +EL E   +++ +L+P+
Sbjct: 395 LLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGN----VELGEIAAESLIELEPN 450

Query: 369 SVTFLNVLA 377
           +     +LA
Sbjct: 451 NTGNYVLLA 459



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 73/141 (51%)

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           M  S    PN  SW++++ G+       EAL L   MQ+     +  T +++L   A L 
Sbjct: 1   MSCSENSKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQ 60

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  IH  V + G  ++  V + L+D+Y +C  +  A  +F     KN+V++N MI 
Sbjct: 61  NLNLGKEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIV 120

Query: 342 GYARNGDLTKVIELFEQLKTV 362
           GY  NG++ K  ELF+Q++ V
Sbjct: 121 GYCENGNVEKAKELFDQMELV 141


>gi|6691205|gb|AAF24543.1|AC007508_6 F1K23.11 [Arabidopsis thaliana]
          Length = 841

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/495 (29%), Positives = 260/495 (52%), Gaps = 38/495 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H  I+K+GF  ++ +S  L+  + K   L+ A ++F E+P+P++ ++N +ISGY++ 
Sbjct: 375 KKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKH 434

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL-----QLGMAIHSKIVKYSLER 137
           G  ++ L L   +  S   AD Y+ +  L A    GS       L   +H++I+K  +E 
Sbjct: 435 GLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVEL 494

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
             V+   L+D Y K G +E A  VF  M D++++   S+I+     G +E A    +   
Sbjct: 495 DDVLITALVDTYVKSGKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTK 554

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
             D + YN ++ G ++ G+                                  ++ ++  
Sbjct: 555 VKDIVVYNAMVEGFSRSGET------------------------------AKRSVDMYIS 584

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           MQ      +  TF++++   + L++   G  +H+ ++K G+   I + S+LLDMY+KCG 
Sbjct: 585 MQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGG 644

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +  A  +F  +  KN+ +W +MI GY +NG+  + +ELF ++K  R ++P+ VTFL  L+
Sbjct: 645 INDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFR-IEPNYVTFLGALS 703

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           ACSH+ +  DK  E FESM +DY +KP +EH   ++ LMG+ G++ +A    R +     
Sbjct: 704 ACSHSGL-VDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPD 762

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY-VYVMLCNLYTSHGNWDVASVMRN 496
             +W ALLS+     ++++A I+A+E+ KL  D     Y+ L N+Y S+  WD  S +R 
Sbjct: 763 SDIWAALLSSCNLHGNVELASIAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIRE 822

Query: 497 FMRERGLRKEAGCSW 511
            M+ R + K  G SW
Sbjct: 823 VMKRRRISKTIGRSW 837



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 123/265 (46%), Gaps = 41/265 (15%)

Query: 4   YVLFHLLRASSDLGWD-----TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           Y L  +L+AS+  G       + C+ +H  I+K     +  + TAL+  Y K   L  A 
Sbjct: 457 YTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVELDDVLITALVDTYVKSGKLESAR 516

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSG--------------------------------KYR 86
            +F  +   +VV   S+ISGY+  G                                  +
Sbjct: 517 TVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFSRSGETAK 576

Query: 87  KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
           +++++++ ++R+  + +  +F S + AC  L S ++G  +H++I+K  +   + + + L+
Sbjct: 577 RSVDMYISMQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLL 636

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTI 202
           DMY KCG + DA  VF +M +K++ SW S+I    +NGN E A     R+      P+ +
Sbjct: 637 DMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYV 696

Query: 203 SYNEVINGIAQFGDIEDAIMILSSM 227
           ++   ++  +  G ++    I  SM
Sbjct: 697 TFLGALSACSHSGLVDKGYEIFESM 721



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 101/193 (52%), Gaps = 6/193 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      ++ A S L      QQ+H  I+KSG  +++ + ++L+  Y K   + DA ++
Sbjct: 592 PNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRV 651

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ + +V SW S+I GY ++G   +AL LF  ++   I  +  +F  AL+AC   G +
Sbjct: 652 FDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLV 711

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIG---VFGEMIDKDIISWNSV 176
             G  I   + + YS++  +    C++D+ G+ G +  A        E  D DI  W ++
Sbjct: 712 DKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDI--WAAL 769

Query: 177 IAASARNGNLELA 189
           +++   +GN+ELA
Sbjct: 770 LSSCNLHGNVELA 782



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  IH+ +IK G    + ++  LL ++ KCG +  A  +F  L +  L  +N MI+GY +
Sbjct: 374 GKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLK 433

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           +G L K + L  Q  +    + D  T   VL A
Sbjct: 434 HG-LVKELLLLVQRMSYSGEKADGYTLSMVLKA 465


>gi|357472867|ref|XP_003606718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507773|gb|AES88915.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 156/502 (31%), Positives = 259/502 (51%), Gaps = 13/502 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           ++LH  +  +G++    +++ L+  Y     L+ A K+F +IPQ ++  W +LI+   + 
Sbjct: 49  KKLHALLTTNGYVRFNLIASNLITLYTTCGQLSIARKLFDKIPQTNIHRWIALIATCARC 108

Query: 83  GKYRKALNLFVELE--RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           G +  AL +F E++    +     +   S L ACG +G    G  +H  ++K S E    
Sbjct: 109 GFHDHALEVFSEMQTLNDQKSNSVFVIPSVLKACGHVGDRIYGEQVHCLVLKCSFEIDAF 168

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP--- 197
           +++ LI MY KCG V DA  VF  M+ KD+++ N+V++  A+ G    A   +  +    
Sbjct: 169 VSSALIVMYSKCGEVRDARKVFDGMVVKDLVAMNAVVSGYAQQGLPNEALSLVENMKLMG 228

Query: 198 -NPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PNSSSWNSILTGYVNRNRVPEAL 252
            NP+ +++N +I+G AQ  D E    I   M      P+  SW S+L+G+V   R  EA 
Sbjct: 229 VNPNVVTWNALISGFAQKCDREMVSEIFRLMNEDRVEPDVVSWTSVLSGFVQNFRNEEAF 288

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
             F +M          T S +L   A  + + +G  IH   +  G++  + V SAL+DMY
Sbjct: 289 DAFKKMLLLGFCPTSATISALLPACATEARVRFGKEIHGYALVIGVEDDLYVRSALVDMY 348

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
           +KCG +  A ++F  +  KN VT N+MI GYA +G   + IELF Q++     + D +TF
Sbjct: 349 AKCGFISEARTLFYKMPEKNTVTMNSMIFGYANHGCCEEAIELFNQMEMEGVPKLDHLTF 408

Query: 373 LNVLAACSHT-DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431
              L ACSH  DI   +    F+ M + Y I+P +EH   M+ L G+ G++  A  +I+ 
Sbjct: 409 TAALTACSHVGDIELGQ--RLFKIMQEKYCIEPRLEHYACMVDLFGRAGKLEEAYGIIKS 466

Query: 432 LGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA 491
           +       VW ALL+A      +++A ++A  + +LE +S    ++L +LY   G W   
Sbjct: 467 MPVKPDLFVWGALLAACRNHGHVELAEVAAKHLSELEPESAGNRLLLSSLYADAGTWGKV 526

Query: 492 SVMRNFMRERGLRKEAGCSWIE 513
             ++  +++  LRK  G SWI+
Sbjct: 527 ERIKRRIKKGKLRKLQGLSWID 548



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 109/193 (56%), Gaps = 5/193 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +  LL A +      + +++H Y L  G   +++V +AL+  Y K   +++A  +
Sbjct: 301 PTSATISALLPACATEARVRFGKEIHGYALVIGVEDDLYVRSALVDMYAKCGFISEARTL 360

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA-DAYSFTSALAACGQLGS 119
           F ++P+ + V+ NS+I GY   G   +A+ LF ++E   +   D  +FT+AL AC  +G 
Sbjct: 361 FYKMPEKNTVTMNSMIFGYANHGCCEEAIELFNQMEMEGVPKLDHLTFTAALTACSHVGD 420

Query: 120 LQLGMAIHSKIV--KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSV 176
           ++LG  +  KI+  KY +E  +    C++D++G+ G +E+A G+   M +  D+  W ++
Sbjct: 421 IELGQRLF-KIMQEKYCIEPRLEHYACMVDLFGRAGKLEEAYGIIKSMPVKPDLFVWGAL 479

Query: 177 IAASARNGNLELA 189
           +AA   +G++ELA
Sbjct: 480 LAACRNHGHVELA 492



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 141/353 (39%), Gaps = 83/353 (23%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF-- 61
           +V+  +L+A   +G   Y +Q+HC +LK  F  + FVS+AL+  Y K   + DA K+F  
Sbjct: 133 FVIPSVLKACGHVGDRIYGEQVHCLVLKCSFEIDAFVSSALIVMYSKCGEVRDARKVFDG 192

Query: 62  ------------------VEIP---------------QPSVVSWNSLISGYVQSGKYRKA 88
                               +P                P+VV+WN+LISG+ Q       
Sbjct: 193 MVVKDLVAMNAVVSGYAQQGLPNEALSLVENMKLMGVNPNVVTWNALISGFAQKCDREMV 252

Query: 89  LNLFVELERSEIYADAYSFTSALA-----------------------------------A 113
             +F  +    +  D  S+TS L+                                   A
Sbjct: 253 SEIFRLMNEDRVEPDVVSWTSVLSGFVQNFRNEEAFDAFKKMLLLGFCPTSATISALLPA 312

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISW 173
           C     ++ G  IH   +   +E  + + + L+DMY KCG + +A  +F +M +K+ ++ 
Sbjct: 313 CATEARVRFGKEIHGYALVIGVEDDLYVRSALVDMYAKCGFISEARTLFYKMPEKNTVTM 372

Query: 174 NSVIAASARNGNLELAFGFLHRL-----PNPDTISYNEVINGIAQFGDIEDAIMILSSMP 228
           NS+I   A +G  E A    +++     P  D +++   +   +  GDIE    +   M 
Sbjct: 373 NSMIFGYANHGCCEEAIELFNQMEMEGVPKLDHLTFTAALTACSHVGDIELGQRLFKIMQ 432

Query: 229 -----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
                 P    +  ++  +    ++ EA   +G ++S  V  D + +  +L+ 
Sbjct: 433 EKYCIEPRLEHYACMVDLFGRAGKLEEA---YGIIKSMPVKPDLFVWGALLAA 482



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 158/388 (40%), Gaps = 69/388 (17%)

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           SLQ G  +H+ +      R  +IA+ LI +Y  CG +  A  +F ++   +I  W ++IA
Sbjct: 44  SLQQGKKLHALLTTNGYVRFNLIASNLITLYTTCGQLSIARKLFDKIPQTNIHRWIALIA 103

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
             AR G                             F D   A+ + S M + N    NS+
Sbjct: 104 TCARCG-----------------------------FHD--HALEVFSEMQTLNDQKSNSV 132

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
                    +P  L   G +  +                       +G  +H  V+K   
Sbjct: 133 FV-------IPSVLKACGHVGDR----------------------IYGEQVHCLVLKCSF 163

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
           +    V+SAL+ MYSKCG+V  A  +F  +  K+LV  NA+++GYA+ G   + + L E 
Sbjct: 164 EIDAFVSSALIVMYSKCGEVRDARKVFDGMVVKDLVAMNAVVSGYAQQGLPNEALSLVEN 223

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           +K +  + P+ VT+ N L +        + VSE F  M +D  ++P V    S++    Q
Sbjct: 224 MKLM-GVNPNVVTW-NALISGFAQKCDREMVSEIFRLMNEDR-VEPDVVSWTSVLSGFVQ 280

Query: 419 ---KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR--ISAAEVIKLEGDSDY 473
                E + A + +  LGF        ALL A    + +   +     A VI +E D  Y
Sbjct: 281 NFRNEEAFDAFKKMLLLGFCPTSATISALLPACATEARVRFGKEIHGYALVIGVEDDL-Y 339

Query: 474 VYVMLCNLYTSHGNWDVASVMRNFMRER 501
           V   L ++Y   G    A  +   M E+
Sbjct: 340 VRSALVDMYAKCGFISEARTLFYKMPEK 367



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 1/114 (0%)

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           +++ ++       +L  G  +H+ +   G     ++AS L+ +Y+ CGQ+ IA  +F  +
Sbjct: 31  SYAKLIETYTHSRSLQQGKKLHALLTTNGYVRFNLIASNLITLYTTCGQLSIARKLFDKI 90

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL-NVLAACSH 381
            + N+  W A+I   AR G     +E+F +++T+ D + +SV  + +VL AC H
Sbjct: 91  PQTNIHRWIALIATCARCGFHDHALEVFSEMQTLNDQKSNSVFVIPSVLKACGH 144


>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
          Length = 950

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 145/475 (30%), Positives = 248/475 (52%), Gaps = 34/475 (7%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           TAL+  Y ++  L  A ++  E+P+ + VSW +L++ + Q G  ++A++L+ ++      
Sbjct: 316 TALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCR 375

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            +   F+S L AC  L  L+ G  IH++ +K +    V +++ LIDMY KC  + DA  +
Sbjct: 376 PNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMI 435

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F  +  K+I+ W                               N +I+G +    + +A 
Sbjct: 436 FYSLPQKNIVCW-------------------------------NSLISGYSNNSKMVEAE 464

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   MP+ N +SWNSI++GY    +  +AL  F  M +      E TFS++L   A L 
Sbjct: 465 ELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLC 524

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           +L  G ++H+ +IK G+  SI V +AL DMY+K G ++ +  +F  + ++N V W AMI 
Sbjct: 525 SLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQ 584

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G A NG   + I LFE + +   + P+  TFL +L ACSH+ +  +    YFE M +  G
Sbjct: 585 GLAENGFAEESILLFEDMISA-GITPNEQTFLAILFACSHSGL-VEHAMHYFE-MMQACG 641

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I P  +H   M+ ++ + G +  A+ ++ ++   S    W ALLSA     + ++   +A
Sbjct: 642 ISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAA 701

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
             + +L+ D+   YV+L N+Y S G W  A+ MR  M+   L+K+ GCSW+++ +
Sbjct: 702 KRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQIRD 756



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 159/319 (49%), Gaps = 32/319 (10%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           T ++    K  S+ DA +++ + P  SV  + ++I+G+V +   + AL +F E+    + 
Sbjct: 183 TTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVS 242

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL-ERGVVIANCLIDMYGKCGSVEDAIG 160
            +  +  S + AC   G   L M+I    +K +L ++ + + N LI +Y + G  + A  
Sbjct: 243 PNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARR 302

Query: 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220
           +F EM  +D++SW ++                               ++  A+ GD+E A
Sbjct: 303 MFDEMEVRDVVSWTAL-------------------------------LDVYAELGDLEGA 331

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             +L  MP  N  SW +++  +  +    EA+ L+ +M +     +   FS++L   A L
Sbjct: 332 RRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASL 391

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
             L  G  IH+  +K     ++ V+SAL+DMY KC Q+  A  +F SL +KN+V WN++I
Sbjct: 392 QDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLI 451

Query: 341 TGYARNGDLTKVIELFEQL 359
           +GY+ N  + +  ELF+++
Sbjct: 452 SGYSNNSKMVEAEELFKKM 470



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 97/208 (46%), Gaps = 4/208 (1%)

Query: 153 GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIA 212
           G+  D + V G        +++ ++    + G++  A      +P    +SY  +++ + 
Sbjct: 134 GAFRDCVSVVGA---ASPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALM 190

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
           + G + DA+ +    P  +   + +++ G+V      +AL +F EM S  V  +E T  +
Sbjct: 191 KRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVS 250

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
           ++    G       M I    +K   LD ++ V ++L+ +Y + G  + A  MF  +  +
Sbjct: 251 VIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVR 310

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQL 359
           ++V+W A++  YA  GDL     + +++
Sbjct: 311 DVVSWTALLDVYAELGDLEGARRVLDEM 338


>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
 gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 152/483 (31%), Positives = 258/483 (53%), Gaps = 32/483 (6%)

Query: 52  NSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSAL 111
           +SLADA  +F E+P    VS+N +IS +   G    A + F +L   +   DA S+   L
Sbjct: 111 SSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLARHYF-DLAPEK---DAVSWNGML 166

Query: 112 AACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII 171
           AA  + G +Q    +     ++      +  N L+  Y +C  +E+A  +F  M  +D++
Sbjct: 167 AAYIRNGRIQEARDLFDSRTEWD----AISWNALMAGYVQCSQIEEAQKMFNRMPQRDVV 222

Query: 172 SWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
           SWN++++  AR G++  A       P  D  ++  V++G AQ G +E+A  +  +MP  N
Sbjct: 223 SWNTMVSGHARRGDMAEARRLFDVAPIRDVFTWTAVVSGYAQNGMLEEAKRVFDAMPEKN 282

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA--GL--------- 280
           + SWN+++  YV R  + EA  LF  M  ++V     +++TML+G A  G+         
Sbjct: 283 AVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVA----SWNTMLTGYAQAGMLDEARAIFD 338

Query: 281 -----SALTWGMLIHSCVIKQGLDASIVVASAL--LDMYSKCGQVEIADSMFRSLCRKNL 333
                 A++W  ++ +       + ++ +   +    MY KCG +E A S F  +  +++
Sbjct: 339 MMPQKDAVSWAAMLAAYSQGGFSEETLQLFKEMGRCAMYFKCGNMEEAHSAFEEMEERDI 398

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393
           V+WN MI GYAR+G   + +E+F+ ++     +PD +T + VLAACSH+ +  +K   YF
Sbjct: 399 VSWNTMIAGYARHGFGKEALEVFDTMRKT-STKPDDITLVGVLAACSHSGL-VEKGISYF 456

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD 453
            SM +D+G+    EH   MI L+G+ G +  A  +++++ F     +W ALL AS    +
Sbjct: 457 YSMHRDFGVTAKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRN 516

Query: 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
            ++ R +A ++ +LE ++  +YV+L N+Y S G W     MR  M ERG++K  G SWIE
Sbjct: 517 SELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRLMMHERGVKKVPGFSWIE 576

Query: 514 VEN 516
           V+N
Sbjct: 577 VQN 579



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 165/361 (45%), Gaps = 46/361 (12%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           +R+  + ADA       P   V+  N  I+ ++++G+   A  LF  + R        ++
Sbjct: 16  HRRPAAPADA--CITGKPDAEVIRRNKAITAHMRAGRVPDAERLFAAMSRRSTS----TY 69

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
            + L      G L L ++    I +          N L+   G   S+ DA  +F EM  
Sbjct: 70  NAMLGGYAANGRLTLALSFFRSIPRPD----SFSYNTLLHALGVSSSLADARALFDEMPV 125

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           KD +S+N +I++ A +G + LA  +    P  D +S+N ++    + G I++A  +  S 
Sbjct: 126 KDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYIRNGRIQEARDLFDSR 185

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG-------- 279
              ++ SWN+++ GYV  +++ EA  +F  M  +DV     +++TM+SG A         
Sbjct: 186 TEWDAISWNALMAGYVQCSQIEEAQKMFNRMPQRDV----VSWNTMVSGHARRGDMAEAR 241

Query: 280 --------LSALTW----------GMLIHSCVIKQGLDASIVVA-SALLDMYSKCGQVEI 320
                       TW          GML  +  +   +     V+ +A++  Y +   +E 
Sbjct: 242 RLFDVAPIRDVFTWTAVVSGYAQNGMLEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEE 301

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F ++  +N+ +WN M+TGYA+ G L +   +F+ +      Q D+V++  +LAA S
Sbjct: 302 AKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFDMMP-----QKDAVSWAAMLAAYS 356

Query: 381 H 381
            
Sbjct: 357 Q 357



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 12/159 (7%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
            +F        Y K  ++ +AH  F E+ +  +VSWN++I+GY + G  ++AL +F  + 
Sbjct: 366 QLFKEMGRCAMYFKCGNMEEAHSAFEEMEERDIVSWNTMIAGYARHGFGKEALEVFDTMR 425

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA------NCLIDMYG 150
           ++    D  +    LAAC   G ++ G++       YS+ R   +        C+ID+ G
Sbjct: 426 KTSTKPDDITLVGVLAACSHSGLVEKGISYF-----YSMHRDFGVTAKPEHYTCMIDLLG 480

Query: 151 KCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLEL 188
           + G +++A+ +  +M  + D   W +++ AS  + N EL
Sbjct: 481 RAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSEL 519



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 122/278 (43%), Gaps = 42/278 (15%)

Query: 35  LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE 94
           + +VF  TA++  Y +   L +A ++F  +P+ + VSWN++++ YVQ     +A  LF  
Sbjct: 249 IRDVFTWTAVVSGYAQNGMLEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDA 308

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIH------------SKIVKYS-------- 134
           +    +     S+ + L    Q G L    AI             + +  YS        
Sbjct: 309 MPCRNV----ASWNTMLTGYAQAGMLDEARAIFDMMPQKDAVSWAAMLAAYSQGGFSEET 364

Query: 135 LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAF 190
           L+    +  C   MY KCG++E+A   F EM ++DI+SWN++IA  AR+G     LE+  
Sbjct: 365 LQLFKEMGRCA--MYFKCGNMEEAHSAFEEMEERDIVSWNTMIAGYARHGFGKEALEVFD 422

Query: 191 GFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNR 245
                   PD I+   V+   +  G +E  I    SM      +     +  ++      
Sbjct: 423 TMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMIDLLGRA 482

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
            R+ EA++L      KD+P +    STM   + G S +
Sbjct: 483 GRLDEAVNLM-----KDMPFE--PDSTMWGALLGASRI 513


>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/494 (29%), Positives = 264/494 (53%), Gaps = 35/494 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGF-YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           +++H  ++K+G   +   ++ ++ F       +  A+ +FV+I  P++ +WN++I G+ +
Sbjct: 39  KKIHSQLIKTGLAKDTNAASRILAFCASPAGDINYAYLVFVQIQNPNIFAWNTIIRGFSR 98

Query: 82  SGKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           S   + +++L+++ L  S +     ++ S   A  QL     G  +H K++K  LE    
Sbjct: 99  SSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEGAQLHGKMIKLGLENDSF 158

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           I N ++ MY  CG   +A  VF   +D DI++WN++I                       
Sbjct: 159 IRNTILFMYVNCGFTSEARKVFDRGMDFDIVAWNTMIM---------------------- 196

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                    G+A+ G ++++  +   M   N+ SWNS+++GYV   R  +AL LF +MQ 
Sbjct: 197 ---------GVAKCGLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQV 247

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           + +   E+T  ++L+  A L A+  G  IH  ++K+  + + +V +A++DMYSKCG ++ 
Sbjct: 248 ERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDK 307

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F+S  R+ L  WN+MI G A NG   + ++LF  L++  DL+PD V+F+ VL AC 
Sbjct: 308 AVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQS-SDLRPDDVSFIAVLTACD 366

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           HT +  DK  +YF  M   Y IKP ++H   M+ ++G+ G +  A+ +IR +      ++
Sbjct: 367 HTGM-VDKAKDYFLLMRDKYKIKPGIKHFSCMVDVLGRAGLLEEAEELIRSMHVDPDAII 425

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W +LL +     ++ +A+ +A  +I+L       +V++ N Y +  N++ A   R  ++E
Sbjct: 426 WGSLLWSCCKYGNIKMAKRAANHLIELNPSESSSFVLVANAYAAANNFEEALKERLTLKE 485

Query: 501 RGLRKEAGCSWIEV 514
             + KE GCS IEV
Sbjct: 486 NHIGKEPGCSCIEV 499



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 102/191 (53%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+ +  LL A + LG     + +H Y++K  F  N  V TA++  Y K  S+  A ++
Sbjct: 252 PSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQV 311

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F   P+  +  WNS+I G   +G+  +AL LF  L+ S++  D  SF + L AC   G +
Sbjct: 312 FQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQSSDLRPDDVSFIAVLTACDHTGMV 371

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
                    +  KY ++ G+   +C++D+ G+ G +E+A  +   M +D D I W S++ 
Sbjct: 372 DKAKDYFLLMRDKYKIKPGIKHFSCMVDVLGRAGLLEEAEELIRSMHVDPDAIIWGSLLW 431

Query: 179 ASARNGNLELA 189
           +  + GN+++A
Sbjct: 432 SCCKYGNIKMA 442


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 158/493 (32%), Positives = 252/493 (51%), Gaps = 43/493 (8%)

Query: 55  ADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF-TSALAA 113
           A + +     P PS  +  S  + +   G  R AL  F  + R + +   YSF   AL+A
Sbjct: 86  ASSTRSGTRTPTPSSPTPCSAPTRW--GGAPRDALAAFSAMPRRDSFT--YSFLIKALSA 141

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISW 173
            G    +    A+HS +VK        + N LID Y K G   DA  VF EM ++D++SW
Sbjct: 142 AG----VAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSW 197

Query: 174 NSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS 233
           N+ +AA  R G L         +P  DT+S+N +++G  + G++E A  +   MP  N  
Sbjct: 198 NTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVV 257

Query: 234 SWNSILTGYVNR----------NRVP---------------------EALHLFGEMQSKD 262
           SW+++++GY  +          +++P                     EA  LF +M+   
Sbjct: 258 SWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEAS 317

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V +D     ++L+  A   +L+ G  IH  V K+ L  S  V +AL+DM+ KCG V  AD
Sbjct: 318 VELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRAD 377

Query: 323 SMFRS-LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            +F +   +K+ V+WN++I G+A +G   K +ELF Q+K  +   PD+VT +NVL+AC+H
Sbjct: 378 YVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQ-QGFNPDAVTMINVLSACTH 436

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
                D+   +F +M +DYGI P +EH   MI L+G+ G +  A  +I+ + +    V+W
Sbjct: 437 MGF-VDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIW 495

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            +LLSA     +++ A I+  E+ KL+  +   Y +L N+Y   G W   +  R  M+  
Sbjct: 496 GSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGT 555

Query: 502 GLRKEAGCSWIEV 514
           G +K AG SW+E+
Sbjct: 556 GSQKTAGSSWVEL 568



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 5/196 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV   + ++  Y K   L  A  +F ++P  ++V+W  ++S   Q G   +A  LF +++
Sbjct: 255 NVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMK 314

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
            + +  D  +  S LAAC + GSL LG  IH  + K +L R   + N LIDM+ KCG V 
Sbjct: 315 EASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVN 374

Query: 157 DAIGVFG-EMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGI 211
            A  VF  E + KD +SWNS+I   A +G+ + A     ++     NPD ++   V++  
Sbjct: 375 RADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSAC 434

Query: 212 AQFGDIEDAIMILSSM 227
              G +++     S+M
Sbjct: 435 THMGFVDEGRRHFSNM 450


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 169/552 (30%), Positives = 277/552 (50%), Gaps = 46/552 (8%)

Query: 5   VLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEI 64
           V  H+L+A S+       +++HC I+K G   + FV T L+  Y K   +  +  +F E 
Sbjct: 105 VFSHVLKACSESRNFDEGRKVHCQIVKFGN-PDSFVFTGLVDMYAKCGEIECSRSVFDEN 163

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
              +V SW+S+I+GYVQ+   +  L LF  +    I A+  +    + AC +LG+L  G 
Sbjct: 164 LDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGK 223

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
            +H  ++K  +E G  +   L+D+Y KCG V DA  VF E+   DI+SW ++I    +NG
Sbjct: 224 WLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNG 283

Query: 185 NLELAFG-FLHR-----LPNP--------------------------------DTISYNE 206
             E A   FL +     LPN                                 D I  N 
Sbjct: 284 CPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLGSRDPIVTNS 343

Query: 207 VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
           +++  A+     DA  +  ++   +  +WNSI++ +       EAL LF +M+   V  D
Sbjct: 344 LVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPD 403

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS-IVVASALLDMYSKCGQVEIADSMF 325
             T  ++LS  A L+AL  G   H+  +K+GL +S + V +ALL  Y+KCG  E A  +F
Sbjct: 404 AVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIF 463

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVLAACSHTDI 384
             + +K+ VTW+AMI+GY   G+    + +F + LK   +L+P+   F ++L+ACSHT +
Sbjct: 464 DGMDQKSTVTWSAMISGYGIQGNGRGSLSIFGDMLKA--ELKPNEEIFTSILSACSHTGM 521

Query: 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRAL 444
              +    F  + +DY + P+ +H   M+ L+ + G +  A   I+++       ++ A 
Sbjct: 522 -IGEGWRLFTMICQDYNLVPSTKHYTCMVDLLARAGRLKEALDFIQKMPVQPDVSLFGAF 580

Query: 445 LSASGACSDLDVARISAAEVIKLE-GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           L   G  S  D+  ++   +++L  GD+ Y YV++CNLY S   W     +R  M++RGL
Sbjct: 581 LHGCGLHSRFDLGELAIKRMLELHPGDACY-YVLMCNLYASDARWSKVKQVRELMKQRGL 639

Query: 504 RKEAGCSWIEVE 515
            K  GCS +E++
Sbjct: 640 MKTPGCSLMEMD 651



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 184/397 (46%), Gaps = 44/397 (11%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           ++H Y++  G   ++  ST L+  Y     L  A  +F  IP P  +SW  +I  Y  + 
Sbjct: 23  EMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNS 82

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           ++R  +  +  +       D   F+  L AC +  +   G  +H +IVK+      V   
Sbjct: 83  EFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFGNPDSFVFTG 142

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS 203
            L+DMY KCG +E +  VF E +D+++ SW+S+IA   +N   +      +R+   + I 
Sbjct: 143 -LVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRM-REELIE 200

Query: 204 YNEVINGI----------------------------------------AQFGDIEDAIMI 223
            N++  GI                                        A+ G + DA  +
Sbjct: 201 ANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSV 260

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +   +  SW +++ GY       EAL LF + +   V  ++ T +++ S  + L  L
Sbjct: 261 FDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNL 320

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  IH   IK G     +V ++L+D Y+KC     A  +F ++  +++V WN++I+ +
Sbjct: 321 NLGRSIHGLSIKLG-SRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAF 379

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           ++NG   + +ELF Q++ +  + PD+VT ++VL+AC+
Sbjct: 380 SQNGSAYEALELFHQMR-MGSVLPDAVTLVSVLSACA 415



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 185/393 (47%), Gaps = 25/393 (6%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N+  L  L+ A   LG     + LH Y++K G     ++ TAL+  Y K   + DA  +F
Sbjct: 202 NQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVF 261

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            E+    +VSW ++I GY Q+G   +AL LF++ E+  +  +  +  S  ++C QL +L 
Sbjct: 262 DELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLN 321

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           LG +IH   +K    R  ++ N L+D Y KC    DA  VF  + D+D+++WNS+I+A +
Sbjct: 322 LGRSIHGLSIKLG-SRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFS 380

Query: 182 RNGNLELAFGFLHRLPN----PDTISYNEVINGIA-----QFGDIEDAIMILSSMPSPNS 232
           +NG+   A    H++      PD ++   V++  A     Q G    A  +   + S N 
Sbjct: 381 QNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNV 440

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML-IHS 291
               ++LT Y        A  +F  M  K       T+S M+SG  G+     G L I  
Sbjct: 441 YVGTALLTFYAKCGDAESARVIFDGMDQKST----VTWSAMISGY-GIQGNGRGSLSIFG 495

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK-NLVT----WNAMITGYARN 346
            ++K  L  +  + +++L   S  G +     +F  +C+  NLV     +  M+   AR 
Sbjct: 496 DMLKAELKPNEEIFTSILSACSHTGMIGEGWRLFTMICQDYNLVPSTKHYTCMVDLLARA 555

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           G L + ++  +++     +QPD   F   L  C
Sbjct: 556 GRLKEALDFIQKMP----VQPDVSLFGAFLHGC 584



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/449 (23%), Positives = 187/449 (41%), Gaps = 72/449 (16%)

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
           M +H+ +V   L R +  +  L+ +YG  G ++ A  VF  +   D +SW  +I     N
Sbjct: 22  MEMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLN 81

Query: 184 GNLELAFGFLHRLP--------------------------------------NPDTISYN 205
                  GF +R+                                       NPD+  + 
Sbjct: 82  SEFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFGNPDSFVFT 141

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
            +++  A+ G+IE +  +       N  SW+S++ GYV  N   + L LF  M+ + +  
Sbjct: 142 GLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEA 201

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           ++ T   ++     L AL  G  +H  +IK G++    + +ALLD+Y+KCG V  A S+F
Sbjct: 202 NQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVF 261

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH---- 381
             L   ++V+W AMI GY +NG   + ++LF Q + V  L P+ VT  +V ++CS     
Sbjct: 262 DELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVL-PNDVTIASVFSSCSQLLNL 320

Query: 382 ----------------TDIPFDKVSEYFESMTKDYGIKPTVEHCC--------SMIRLMG 417
                             I  + + +++     +   +   E           S+I    
Sbjct: 321 NLGRSIHGLSIKLGSRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFS 380

Query: 418 QKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA---AEVIK--LEGDSD 472
           Q G  + A  +  ++  GS       L+S   AC+ L+  ++ +   A  +K  L   + 
Sbjct: 381 QNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNV 440

Query: 473 YVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           YV   L   Y   G+ + A V+ + M ++
Sbjct: 441 YVGTALLTFYAKCGDAESARVIFDGMDQK 469


>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
          Length = 950

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 145/475 (30%), Positives = 248/475 (52%), Gaps = 34/475 (7%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           TAL+  Y ++  L  A ++  E+P+ + VSW +L++ + Q G  ++A++L+ ++      
Sbjct: 316 TALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCR 375

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            +   F+S L AC  L  L+ G  IH++ +K +    V +++ LIDMY KC  + DA  +
Sbjct: 376 PNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMI 435

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F  +  K+I+ W                               N +I+G +    + +A 
Sbjct: 436 FYSLPQKNIVCW-------------------------------NSLISGYSNNSKMVEAE 464

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   MP+ N +SWNSI++GY    +  +AL  F  M +      E TFS++L   A L 
Sbjct: 465 ELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLC 524

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           +L  G ++H+ +IK G+  SI V +AL DMY+K G ++ +  +F  + ++N V W AMI 
Sbjct: 525 SLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQ 584

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G A NG   + I LFE + +   + P+  TFL +L ACSH+ +  +    YFE M +  G
Sbjct: 585 GLAENGFAEESILLFEDMISA-GITPNEQTFLAILFACSHSGL-VEHAMHYFE-MMQACG 641

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I P  +H   M+ ++ + G +  A+ ++ ++   S    W ALLSA     + ++   +A
Sbjct: 642 ISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAA 701

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
             + +L+ D+   YV+L N+Y S G W  A+ MR  M+   L+K+ GCSW+++ +
Sbjct: 702 KRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQIRD 756



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 159/319 (49%), Gaps = 32/319 (10%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           T ++    K  S+ DA +++ + P  SV  + ++I+G+V +   + AL +F E+    + 
Sbjct: 183 TTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVS 242

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL-ERGVVIANCLIDMYGKCGSVEDAIG 160
            +  +  S + AC   G   L M+I    +K +L ++ + + N LI +Y + G  + A  
Sbjct: 243 PNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARR 302

Query: 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220
           +F EM  +D++SW ++                               ++  A+ GD+E A
Sbjct: 303 MFDEMEVRDVVSWTAL-------------------------------LDVYAELGDLEGA 331

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
             +L  MP  N  SW +++  +  +    EA+ L+ +M +     +   FS++L   A L
Sbjct: 332 RRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASL 391

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
             L  G  IH+  +K     ++ V+SAL+DMY KC Q+  A  +F SL +KN+V WN++I
Sbjct: 392 QDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLI 451

Query: 341 TGYARNGDLTKVIELFEQL 359
           +GY+ N  + +  ELF+++
Sbjct: 452 SGYSNNSKMVEAEELFKKM 470



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 97/208 (46%), Gaps = 4/208 (1%)

Query: 153 GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIA 212
           G+  D + V G        +++ ++    + G++  A      +P    +SY  +++ + 
Sbjct: 134 GAFRDCVSVVGA---ASPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALM 190

Query: 213 QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST 272
           + G + DA+ +    P  +   + +++ G+V      +AL +F EM S  V  +E T  +
Sbjct: 191 KRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVS 250

Query: 273 MLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
           ++    G       M I    +K   LD ++ V ++L+ +Y + G  + A  MF  +  +
Sbjct: 251 VIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVR 310

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQL 359
           ++V+W A++  YA  GDL     + +++
Sbjct: 311 DVVSWTALLDVYAELGDLEGARRVLDEM 338


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 155/526 (29%), Positives = 267/526 (50%), Gaps = 14/526 (2%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           L+ AS+ L       Q+H  I      SN  V T L+     + SL  A  +F     P+
Sbjct: 46  LIHASNTL---PQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPN 102

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           +  +N+LI G  ++ ++  +++ FV + R  I  D  +    L +   L  + LG  +H 
Sbjct: 103 LFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHG 162

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD----IISWNSVIAASARNG 184
            ++K  LE    +   L+DMY K G +   + +F E   ++    I+ WN +I    + G
Sbjct: 163 GVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVG 222

Query: 185 NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
           +L  A      +P  +  S+N +ING  + GD++ A  +   MP  N  SW +++ G+  
Sbjct: 223 DLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQ 282

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV 304
                +AL +F  M  + V  ++ T  + L     + AL  G  IH+ +   G   +  +
Sbjct: 283 NGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGI 342

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
            +AL+DMY+KCG ++ A  +F     K+L+TW+ MI G+A +G   + ++ F ++K+   
Sbjct: 343 GTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSA-G 401

Query: 365 LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424
           + PD V FL +L ACSH+    D+   +FESM  DY I+PT++H   ++ L+G+ G +  
Sbjct: 402 INPDEVIFLAILTACSHSG-NVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDE 460

Query: 425 AQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484
           A   I+ +      V+W AL  A  A  ++++A ++A ++++LE      YV L N+Y +
Sbjct: 461 ALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAA 520

Query: 485 HGNWDVASVMRNFMRERGLRKEAGCSWIEVEN-----VAAHSSNIR 525
            G W+    +R  M+ RG+ K+ G S+IEVE      VA   +++R
Sbjct: 521 VGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVR 566



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 100/191 (52%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+  +   L A + +G     +++H Y+  +GF  N  + TAL+  Y K  ++  A ++
Sbjct: 303 PNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRV 362

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           FVE     +++W+ +I G+   G + +AL  FV+++ + I  D   F + L AC   G++
Sbjct: 363 FVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNV 422

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G+    S  + YS+E  +     ++D+ G+ G +++A+     M I+ D + W ++  
Sbjct: 423 DQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFC 482

Query: 179 ASARNGNLELA 189
           A   + N+E+A
Sbjct: 483 ACRAHKNIEMA 493


>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 154/514 (29%), Positives = 261/514 (50%), Gaps = 33/514 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +   +LL+A          +++H  ++++GF  + FVS AL+GFY     +    ++
Sbjct: 89  PNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQV 148

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+ QP +V W  +I  YV      KAL LF  +    +  D  + ++ ++ACG LG L
Sbjct: 149 FDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDL 208

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +  A+H  I K  +E    +++ LI  YG+CGS                          
Sbjct: 209 GVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGS-------------------------- 242

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                L+ A+ F    P  + + +N +I+   +  ++E    +  SMP  +  SWNS++ 
Sbjct: 243 -----LDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIG 297

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           G+    +  EAL  F EM+   V  +  T  + LS  A   AL  G  IH+ V K  ++ 
Sbjct: 298 GFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNR 357

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
              + S+L+DMYSKCG ++ A  +F    R++L TW +++ G A +G   K +  F ++K
Sbjct: 358 DGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMK 417

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
             + +QPD VT + VL+AC+H  +  D+   YF+SM K +G+ P VEH   M+ L+G+ G
Sbjct: 418 EAQ-VQPDDVTMVGVLSACAHAGL-LDQGWWYFQSMEKVFGLVPKVEHYGCMVDLLGRMG 475

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
            +  A  +I  +   +  ++W A LSA    +++++  ++A  ++ L+    +  VML N
Sbjct: 476 CLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLDPRDPWARVMLSN 535

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           +Y     WD +  +R  ++++GL+K  GCS IEV
Sbjct: 536 MYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEV 569


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 156/556 (28%), Positives = 279/556 (50%), Gaps = 44/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +     + A+S L  +     LH + +  G  SN+FV +A++  Y K      A K+
Sbjct: 111 PDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKV 170

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+   V WN++ISG+ ++  +  ++ +FV++    +  D+ +  + L A  +L   
Sbjct: 171 FDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEY 230

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LGM I     K  L   V +   LI +Y KCG       +F ++   D+IS+N++I+  
Sbjct: 231 RLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGY 290

Query: 181 ARNGNLELAFGFLHRLPN--------------PDTISYNEV------------INGIAQ- 213
             N   E A      L                P  + +N +            I  I Q 
Sbjct: 291 TFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQP 350

Query: 214 ------------FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                         +++ A  +    P  + +SWN++++GY        A+ LF EM  +
Sbjct: 351 SVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ 410

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
             P +  T +++LS  A L AL+ G  +H  +  + L++++ V++AL+DMY+KCG +  A
Sbjct: 411 LSP-NPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEA 469

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVLAACS 380
             +F  +  KN+VTWNAMITGY  +G   + ++LF E L++   + P  VTFL++L ACS
Sbjct: 470 RQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQS--GIPPTGVTFLSILYACS 527

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H+ +   + +E F SM  +YG +P  EH   M+ ++G+ G++  A   I  +       V
Sbjct: 528 HSGL-VSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAV 586

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W ALL A     + ++A +++  + +L+ ++   YV+L N+Y++  N+  A+ +R  +++
Sbjct: 587 WGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKK 646

Query: 501 RGLRKEAGCSWIEVEN 516
           R L K  GC+ IE+++
Sbjct: 647 RKLAKTPGCTLIEIDD 662



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 95/466 (20%), Positives = 218/466 (46%), Gaps = 45/466 (9%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+   ++  G   ++   T L   +  + ++A   ++F ++ +P +  +N LI G+  +G
Sbjct: 32  QIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNG 91

Query: 84  KYRKALNLFVEL-ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
             + ++ L+  L +++ +  D +++  A++A  +L   ++G+ +H+  +   +   + + 
Sbjct: 92  LPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVG 151

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG-FLHRLP---N 198
           + ++D+Y K    E A  VF  M ++D + WN++I+  +RN   E +   F+  L    +
Sbjct: 152 SAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLS 211

Query: 199 PDTISYNEVINGIAQFGD---------------IEDAIMILSSMPS-------------- 229
            D+ +   V+  +A+  +               +   + +L+ + S              
Sbjct: 212 FDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRIL 271

Query: 230 ------PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
                 P+  S+N++++GY   +    A+ LF E+ +    ++  T   ++      + L
Sbjct: 272 FDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHL 331

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
               LI +  +K G+     V++AL  +Y +  +V+ A  +F     K+L +WNAMI+GY
Sbjct: 332 QLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGY 391

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
            +NG   + I LF+++  +  L P+ VT  ++L+AC+   +    + ++   + K   ++
Sbjct: 392 TQNGLTDRAISLFQEM--MPQLSPNPVTVTSILSACAQ--LGALSIGKWVHGLIKSERLE 447

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
             V    +++ +  + G +  A R + +L      V W A+++  G
Sbjct: 448 SNVYVSTALVDMYAKCGSIVEA-RQLFDLMVDKNVVTWNAMITGYG 492


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 150/503 (29%), Positives = 258/503 (51%), Gaps = 14/503 (2%)

Query: 23  QQLHCYIL-KSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           ++LH  IL       N  +   LM  Y           +F EI   +VV +N +I  YV 
Sbjct: 55  KKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVN 114

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           +G Y+ AL +F  +     Y D Y++   L AC   G+L +G+ IH  +VK  L+  + I
Sbjct: 115 NGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYI 174

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN--- 198
            N L+ MYGKC  ++ A  V  EM  +D++SWNS++A  A+NG    A      + +   
Sbjct: 175 GNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKL 234

Query: 199 -PDTISYNEVINGIAQFGDIEDAIMILSSM----PSPNSSSWNSILTGYVNRNRVPEALH 253
            PD  +   ++  +       D ++ +  M       +  SWN ++  YVN     EA+ 
Sbjct: 235 KPDAGTMGSLLPAVTNTS--CDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVD 292

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
           L+ +MQ   V  D  + S++L     LSA   G  IH  V ++ L  ++++ +AL+DMY+
Sbjct: 293 LYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYA 352

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           KCG ++ A ++F  +  +++V+W +MI+ Y  +G     + LF++++      PD + F+
Sbjct: 353 KCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRD-SGFTPDWIAFV 411

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
           +VLAACSH  +  +    Y  ++  +YGI P +EH   M+ L+G+ G++  A  + R++ 
Sbjct: 412 SVLAACSHAGLVDE--GRYCFNLMAEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMP 469

Query: 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
                 VW +LLSA    S +++A ++A  + +L  +    YV+L N+Y   G W     
Sbjct: 470 MEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVET 529

Query: 494 MRNFMRERGLRKEAGCSWIEVEN 516
           +R+ M  +G++K  G S +E+ +
Sbjct: 530 VRSIMNSKGIKKIPGNSNVEIND 552



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 113/233 (48%), Gaps = 4/233 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  +L A  DL      +++H Y+ +     N+ +  AL+  Y K   L +A  +
Sbjct: 304 PDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAV 363

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++    VVSW S+IS Y  SG+ + A+ LF ++  S    D  +F S LAAC   G +
Sbjct: 364 FDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLV 423

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
             G    + + +Y +  G+   NC++D+ G+ G +++A  +  +M ++ +   W S+++A
Sbjct: 424 DEGRYCFNLMAEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSA 483

Query: 180 SARNGNLELAF---GFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
                ++ +A      L +L    +  Y  + N  A+ G  +D   + S M S
Sbjct: 484 CRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNS 536


>gi|356537365|ref|XP_003537198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Glycine max]
          Length = 722

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 149/533 (27%), Positives = 276/533 (51%), Gaps = 44/533 (8%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS---VVSWNSLIS 77
           Y + +H  ++KSGFL    V  +L+  Y K   + DA ++F E  +      VS+N++I 
Sbjct: 195 YGRHVHSVVIKSGFLGWTSVVNSLITMYFKCGCVVDACEVFEEAEEGGSRDYVSYNAMID 254

Query: 78  GYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER 137
           G+    +   A  +F ++++        +F S +++C    SL+ G    S+ +K     
Sbjct: 255 GFASVERSEDAFLIFRDMQKGCFDPTEVTFVSVMSSCS---SLRAGCQAQSQAIKMGFVG 311

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE----LAFGFL 193
            V + N ++ MY   G V +   +F  M ++D++SWN +++   +  NLE    L++  +
Sbjct: 312 CVAVNNAMMTMYSGFGEVIEVQNIFEGMEERDVVSWNIMVSMFLQE-NLEEEAMLSYLKM 370

Query: 194 HRLP-NPDTISY-------------------------------NEVINGIAQFGDIEDAI 221
            R    PD  +Y                               N +++   + G I+ A 
Sbjct: 371 RREGIEPDEFTYGSLLAATDSLQVVEMIHSLLCKSGLVKIEVLNALVSAYCRHGKIKRAF 430

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            I S +P  +  SWNSI++G++      + L  F  + S  V  + Y+ S +LS  + +S
Sbjct: 431 QIFSGVPYKSLISWNSIISGFLMNGHPLQGLEQFSALLSTQVKPNAYSLSLVLSICSSMS 490

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           A++ G  +H  +++ G  + + + +AL+ MY+KCG ++ A  +F ++  ++ +TWNA+I+
Sbjct: 491 AMSHGKQVHGYILRHGFSSEVSLGNALVTMYAKCGSLDKALRVFDAMVERDTITWNAIIS 550

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
            YA++G   + +  FE ++T   ++PD  TF +VL+ACSH  +  D +   F++M K YG
Sbjct: 551 AYAQHGRGEEAVCCFEAMQTSPGIKPDQATFTSVLSACSHAGLVDDGI-RIFDTMVKVYG 609

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
             P+V+H   ++ L+G+ G +  A+R+I+   FG++  +  +L SA  A  +L + R  A
Sbjct: 610 FVPSVDHFSCIVDLLGRSGYLDEAERVIKSGYFGAHSNICWSLFSACAAHGNLGLGRTVA 669

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
             +++ + ++  VYV+L N+  + G W+ A+ +R  MRE G  K+ GCSWI  
Sbjct: 670 RLILERDHNNPSVYVLLSNICAAAGQWEEAANLREMMREFGTIKQPGCSWIRT 722



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 182/378 (48%), Gaps = 45/378 (11%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           T L+    K++S+  A K+F  IP+  +  WN++I+G  + G    A  LF ++ +  + 
Sbjct: 116 TTLLSACAKLDSVEHALKVFDGIPKGHIAVWNAVITGCAEKGNRDFAFGLFRDMNKMGVK 175

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
           AD Y+F + L+ C  L     G  +HS ++K        + N LI MY KCG V DA  V
Sbjct: 176 ADKYTFATMLSLC-SLELFDYGRHVHSVVIKSGFLGWTSVVNSLITMYFKCGCVVDACEV 234

Query: 162 FGEMID---KDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISY---------- 204
           F E  +   +D +S+N++I   A     E AF     +     +P  +++          
Sbjct: 235 FEEAEEGGSRDYVSYNAMIDGFASVERSEDAFLIFRDMQKGCFDPTEVTFVSVMSSCSSL 294

Query: 205 ----------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGY 242
                                 N ++   + FG++ +   I   M   +  SWN +++ +
Sbjct: 295 RAGCQAQSQAIKMGFVGCVAVNNAMMTMYSGFGEVIEVQNIFEGMEERDVVSWNIMVSMF 354

Query: 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
           +  N   EA+  + +M+ + +  DE+T+ ++L+    L  +    +IHS + K GL   I
Sbjct: 355 LQENLEEEAMLSYLKMRREGIEPDEFTYGSLLAATDSLQVVE---MIHSLLCKSGL-VKI 410

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
            V +AL+  Y + G+++ A  +F  +  K+L++WN++I+G+  NG   + +E F  L + 
Sbjct: 411 EVLNALVSAYCRHGKIKRAFQIFSGVPYKSLISWNSIISGFLMNGHPLQGLEQFSALLST 470

Query: 363 RDLQPDSVTFLNVLAACS 380
           + ++P++ +   VL+ CS
Sbjct: 471 Q-VKPNAYSLSLVLSICS 487



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 144/319 (45%), Gaps = 46/319 (14%)

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
           +  N +++   +S ++ ++L LFV    S    D Y  ++A+ A         G  +H+ 
Sbjct: 12  IKLNHMLAALARSNQHTQSLKLFVH-AHSSFTPDHYILSTAITAAANARRAAFGAQLHAL 70

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
            V+  L     +AN L+ +Y K                +D+ S             ++L 
Sbjct: 71  AVRTGLGAHSHVANSLLSLYAKA--------------HRDLAS-------------VKLT 103

Query: 190 FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
           F     +  PD  S+  +++  A+   +E A+ +   +P  + + WN+++TG   +    
Sbjct: 104 F---QEIDCPDAYSWTTLLSACAKLDSVEHALKVFDGIPKGHIAVWNAVITGCAEKGNRD 160

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
            A  LF +M    V  D+YTF+TMLS +  L    +G  +HS VIK G      V ++L+
Sbjct: 161 FAFGLFRDMNKMGVKADKYTFATMLS-LCSLELFDYGRHVHSVVIKSGFLGWTSVVNSLI 219

Query: 310 DMYSKCGQVEIADSMFRSL---CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
            MY KCG V  A  +F        ++ V++NAMI G+A          +F      RD+Q
Sbjct: 220 TMYFKCGCVVDACEVFEEAEEGGSRDYVSYNAMIDGFASVERSEDAFLIF------RDMQ 273

Query: 367 -----PDSVTFLNVLAACS 380
                P  VTF++V+++CS
Sbjct: 274 KGCFDPTEVTFVSVMSSCS 292



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 11/196 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y L  +L   S +   ++ +Q+H YIL+ GF S V +  AL+  Y K  SL  A ++
Sbjct: 474 PNAYSLSLVLSICSSMSAMSHGKQVHGYILRHGFSSEVSLGNALVTMYAKCGSLDKALRV 533

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGS 119
           F  + +   ++WN++IS Y Q G+  +A+  F  ++ S  I  D  +FTS L+AC   G 
Sbjct: 534 FDAMVERDTITWNAIISAYAQHGRGEEAVCCFEAMQTSPGIKPDQATFTSVLSACSHAGL 593

Query: 120 LQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDA-----IGVFGEMIDKDIISW 173
           +  G+ I   +VK Y     V   +C++D+ G+ G +++A      G FG   +   I W
Sbjct: 594 VDDGIRIFDTMVKVYGFVPSVDHFSCIVDLLGRSGYLDEAERVIKSGYFGAHSN---ICW 650

Query: 174 NSVIAASARNGNLELA 189
            S+ +A A +GNL L 
Sbjct: 651 -SLFSACAAHGNLGLG 665



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 102/460 (22%), Positives = 202/460 (43%), Gaps = 65/460 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKIN-SLADAHK 59
           P+ Y+L   + A+++     +  QLH   +++G  ++  V+ +L+  Y K +  LA    
Sbjct: 43  PDHYILSTAITAAANARRAAFGAQLHALAVRTGLGAHSHVANSLLSLYAKAHRDLASVKL 102

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
            F EI  P                                   DAYS+T+ L+AC +L S
Sbjct: 103 TFQEIDCP-----------------------------------DAYSWTTLLSACAKLDS 127

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           ++  + +   I K      + + N +I    + G+ + A G+F +M    + +     A 
Sbjct: 128 VEHALKVFDGIPK----GHIAVWNAVITGCAEKGNRDFAFGLFRDMNKMGVKADKYTFAT 183

Query: 180 SARNGNLELAFGF---LHRLP-NPDTISYNEVINGIA----QFGDIEDAIMILSSMPSPN 231
                +LEL F +   +H +      + +  V+N +     + G + DA  +        
Sbjct: 184 MLSLCSLEL-FDYGRHVHSVVIKSGFLGWTSVVNSLITMYFKCGCVVDACEVFEEAEEGG 242

Query: 232 SS---SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
           S    S+N+++ G+ +  R  +A  +F +MQ       E TF +++S  + L A   G  
Sbjct: 243 SRDYVSYNAMIDGFASVERSEDAFLIFRDMQKGCFDPTEVTFVSVMSSCSSLRA---GCQ 299

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
             S  IK G    + V +A++ MYS  G+V    ++F  +  +++V+WN M++ + +   
Sbjct: 300 AQSQAIKMGFVGCVAVNNAMMTMYSGFGEVIEVQNIFEGMEERDVVSWNIMVSMFLQENL 359

Query: 349 LTKVIELFEQLKTVRD-LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407
             +   +   LK  R+ ++PD  T+ ++LAA   TD    +V E   S+    G+   +E
Sbjct: 360 EEEA--MLSYLKMRREGIEPDEFTYGSLLAA---TDSL--QVVEMIHSLLCKSGL-VKIE 411

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
              +++    + G++ RA ++   + + S  + W +++S 
Sbjct: 412 VLNALVSAYCRHGKIKRAFQIFSGVPYKSL-ISWNSIISG 450


>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Cucumis sativus]
 gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Cucumis sativus]
          Length = 543

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 149/505 (29%), Positives = 268/505 (53%), Gaps = 41/505 (8%)

Query: 19  DTYC------QQLHCYILKSGFLSNVFVSTALMGF-YRKINSLADAHKMFVEIPQPSVVS 71
           D YC      QQ H +++KSG     F ++ ++ F    + ++  A+ +F+++  P++ S
Sbjct: 31  DKYCTTMRDLQQFHAHLIKSGQAIESFAASRILAFCASPLGNMDYAYLVFLQMQNPNLFS 90

Query: 72  WNSLISGYVQSGKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKI 130
           WN++I G+ QS   + AL LF++ L  S++     ++ S   A  QLG    G  +H +I
Sbjct: 91  WNTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGLAHDGAQLHGRI 150

Query: 131 VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF 190
           +K  L+    I N ++ MY   G + +A  +F + ++ D++SWNS+I             
Sbjct: 151 IKLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMIL------------ 198

Query: 191 GFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE 250
                              G+A+ G+I+++  +   MP  N  SWNS++ GYV      E
Sbjct: 199 -------------------GLAKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKE 239

Query: 251 ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLD 310
           AL LF +MQ + +   E+T  ++L+  A + AL  G+ IH  + K  L  + +V +A++D
Sbjct: 240 ALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAIID 299

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370
           MY KCG +  A  +F  +  ++L +WN+MI G A NG   + I +F+ L++   L+PD +
Sbjct: 300 MYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAVNGCEKEAILVFKMLES-SSLKPDCI 358

Query: 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
           +F+ VL AC+H  +  D+  E+F  M   Y I+P+++H   M+ ++ + G +  A++ I+
Sbjct: 359 SFMAVLTACNHGAM-VDEGMEFFSRMKNTYRIEPSIKHYNLMVDMISRAGFLEEAEQFIK 417

Query: 431 ELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490
            +      ++W  LLSA     + ++A+ +A +V +L+ +    YV++ N++    N+  
Sbjct: 418 TMPIEKDAIIWGCLLSACRIYGNTEMAKRAAEKVNELDPEETMGYVLMANIHAWGNNFVG 477

Query: 491 ASVMRNFMRERGLRKEAGCSWIEVE 515
           A   R  MR + + KE G S+IEV+
Sbjct: 478 AMEKRVAMRMKKVEKEPGGSFIEVD 502



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 101/191 (52%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+ +  LL AS+ +G       +H YI K+    N  V TA++  Y K  S+ +A ++
Sbjct: 254 PSEFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQV 313

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +IP  S+ SWNS+I G   +G  ++A+ +F  LE S +  D  SF + L AC     +
Sbjct: 314 FEKIPCRSLSSWNSMIFGLAVNGCEKEAILVFKMLESSSLKPDCISFMAVLTACNHGAMV 373

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             GM   S++   Y +E  +   N ++DM  + G +E+A      M I+KD I W  +++
Sbjct: 374 DEGMEFFSRMKNTYRIEPSIKHYNLMVDMISRAGFLEEAEQFIKTMPIEKDAIIWGCLLS 433

Query: 179 ASARNGNLELA 189
           A    GN E+A
Sbjct: 434 ACRIYGNTEMA 444


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 171/589 (29%), Positives = 286/589 (48%), Gaps = 88/589 (14%)

Query: 5   VLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEI 64
           +L  LLR ++ L   T   Q+H   L  G      + T L+     ++S+  A  +  + 
Sbjct: 1   MLLSLLRTATSL---TQIHQIHAQTLIHGLP----LQTHLIPKLIDLHSIDYARFVLDQT 53

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
           P P+  SWNSLI  Y   G  + +L L++++ RS      ++F   L AC  LGS+  G 
Sbjct: 54  PSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGE 113

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKC-------------------------------G 153
            IH+ +++      + + N LIDMY KC                               G
Sbjct: 114 QIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWG 173

Query: 154 SVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLELAFGFLHRL--------PNP----- 199
            VE A  +F EM + ++++ W ++I    + G+         ++        PN      
Sbjct: 174 QVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVC 233

Query: 200 ----------------------------DTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
                                       +TI    +I+  ++ GD+E A  I   +   N
Sbjct: 234 LLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKN 293

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SWN+I+TG V    + EA+ L+  M+++ V  +E T   +LS  AGL AL  G  +H 
Sbjct: 294 LPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHL 353

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
            + + GLD ++++A+AL+DMY+KCG+++ A  +F     K++  WNAMI G A +GD   
Sbjct: 354 YLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRD 413

Query: 352 VIELFEQLKTVR-DLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
            + +F Q+  VR  +QP+ VTF+ VL+AC+H+ +  ++    F SM   +G+ P +EH  
Sbjct: 414 SLAVFSQM--VRAGVQPNDVTFIGVLSACNHSGL-VEEGRVQFSSMADKHGLSPKLEHYA 470

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            M+ L+G+ G +  A  +++ +      ++W ALLSA     +L++A    +E I    D
Sbjct: 471 CMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELAD-KISETIMASQD 529

Query: 471 SDYVY-VMLCNLYTSHGNW-DVASVMRNFMRERGLRKEAGCSWIEVENV 517
            +  + ++L N+Y S G W DVA V R  ++E+ ++K +GCSW+EV+ V
Sbjct: 530 PNIGFCILLSNIYASSGRWKDVARVRRQ-VKEKRIKKPSGCSWVEVDGV 577



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 120/484 (24%), Positives = 210/484 (43%), Gaps = 67/484 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    +L+A S LG     +Q+H ++L+ GF S++FV  +L+  Y K   L  A   
Sbjct: 91  PSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNF 150

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL------------------------- 95
           + ++     VSWNS+ISGYVQ G+  KA +LF E+                         
Sbjct: 151 WDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEM 210

Query: 96  ---------ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146
                       E+  +A +    L+AC  L + ++G  +   I    +    ++   LI
Sbjct: 211 LSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALI 270

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTI 202
           DMY KCG VE A  +F  +  K++ SWN++I    + G LE A      +      P+ I
Sbjct: 271 DMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEI 330

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTG-----YVNRNRVPEALHLFGE 257
           +   V++  A  G +E    +   +   N    N IL       Y    ++ +A  +F +
Sbjct: 331 TLVNVLSACAGLGALELGREVHLYL-GRNGLDLNVILATALVDMYAKCGKIDDACLIFVK 389

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
              KDV +    ++ M+ G+A        + + S +++ G+  + V    +L   +  G 
Sbjct: 390 TSEKDVAL----WNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGL 445

Query: 318 VEIADSMFRSLCRKN-----LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
           VE     F S+  K+     L  +  M+    R G L +  EL + +     + PDS+ +
Sbjct: 446 VEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNML----IPPDSIIW 501

Query: 373 LNVLAACS-HTDIPF-DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG---EVWRAQR 427
             +L+AC  H ++   DK+SE   + ++D    P +  C  +  +    G   +V R +R
Sbjct: 502 GALLSACRIHRNLELADKISETIMA-SQD----PNIGFCILLSNIYASSGRWKDVARVRR 556

Query: 428 MIRE 431
            ++E
Sbjct: 557 QVKE 560


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 156/556 (28%), Positives = 279/556 (50%), Gaps = 44/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +     + A+S L  +     LH + +  G  SN+FV +A++  Y K      A K+
Sbjct: 111 PDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKV 170

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+   V WN++ISG+ ++  +  ++ +FV++    +  D+ +  + L A  +L   
Sbjct: 171 FDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEY 230

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LGM I     K  L   V +   LI +Y KCG       +F ++   D+IS+N++I+  
Sbjct: 231 RLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGY 290

Query: 181 ARNGNLELAFGFLHRLPN--------------PDTISYNEV------------INGIAQ- 213
             N   E A      L                P  + +N +            I  I Q 
Sbjct: 291 TFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQP 350

Query: 214 ------------FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                         +++ A  +    P  + +SWN++++GY        A+ LF EM  +
Sbjct: 351 SVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ 410

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
             P +  T +++LS  A L AL+ G  +H  +  + L++++ V++AL+DMY+KCG +  A
Sbjct: 411 LSP-NPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEA 469

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVLAACS 380
             +F  +  KN+VTWNAMITGY  +G   + ++LF E L++   + P  VTFL++L ACS
Sbjct: 470 RQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQS--GIPPTGVTFLSILYACS 527

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H+ +   + +E F SM  +YG +P  EH   M+ ++G+ G++  A   I  +       V
Sbjct: 528 HSGL-VSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAV 586

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W ALL A     + ++A +++  + +L+ ++   YV+L N+Y++  N+  A+ +R  +++
Sbjct: 587 WGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKK 646

Query: 501 RGLRKEAGCSWIEVEN 516
           R L K  GC+ IE+++
Sbjct: 647 RKLAKTPGCTLIEIDD 662


>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Brachypodium distachyon]
          Length = 532

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 146/500 (29%), Positives = 265/500 (53%), Gaps = 12/500 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKI---NSLADAHKMFVEIPQPSVVSWNSLISGY 79
           +Q+H  ++  GFLS+      L+ F   +    ++A A+ +F +IP+P +  +N+LI G 
Sbjct: 25  KQVHALMVLRGFLSDPSALRELL-FASAVAVRGAIAHAYLVFDQIPRPDLFMYNTLIRGA 83

Query: 80  VQSGKYRKALNLFVELER----SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135
             +   R A++L+  + R      +  D  +F   L AC  +G+   G  +H+ +VK   
Sbjct: 84  AHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRACTAMGAGGTGAQVHAHVVKAGC 143

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
           E    + N LI M+  CG +  A  +F     +D ++W+++I   AR G++  A      
Sbjct: 144 ESDAFVRNALIGMHASCGELGVASALFDGRAREDAVAWSAMITGCARRGDIVAARKLFDE 203

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
            P  D +S+N +I   A+ G++  A ++ + +P  +  SWN++++G+V       A+ LF
Sbjct: 204 CPVKDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGSHVYAMELF 263

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA--SIVVASALLDMYS 313
            +MQ      D  T  ++LS  A    +  G  +HS + +  L    ++++ +AL+DMY+
Sbjct: 264 EQMQRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTGFTVILGNALIDMYA 323

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           KCG ++ A  +F  +  K++ TWN++I G A +G + + I++F+++   + ++PD +TF+
Sbjct: 324 KCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLKEK-VRPDEITFV 382

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
            VL ACSH  +  DK  EYF  M   Y I+P V+H   M+ ++G+ G +  A   I  + 
Sbjct: 383 AVLIACSHGGM-VDKGREYFNLMQHHYRIEPNVKHYGCMVDMLGRAGLLKEAFEFIDTMK 441

Query: 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
                V+WR LL A     ++++A  +  +++K   D    YV+L N+Y S G W  +  
Sbjct: 442 VEPNSVIWRTLLGACRVHGEIELAEHANRQLLKARNDESGDYVLLSNIYASAGEWSESEK 501

Query: 494 MRNFMRERGLRKEAGCSWIE 513
           MR  M + G+ K+AG + ++
Sbjct: 502 MRKLMDDSGVNKQAGRTVVD 521



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 124/286 (43%), Gaps = 68/286 (23%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLA----- 55
           P++     +LRA + +G      Q+H +++K+G  S+ FV  AL+G +     L      
Sbjct: 110 PDKITFPFVLRACTAMGAGGTGAQVHAHVVKAGCESDAFVRNALIGMHASCGELGVASAL 169

Query: 56  --------------------------DAHKMFVEIPQPSVVS------------------ 71
                                      A K+F E P    VS                  
Sbjct: 170 FDGRAREDAVAWSAMITGCARRGDIVAARKLFDECPVKDHVSWNVMITAYAKRGEMAPAR 229

Query: 72  -------------WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
                        WN++ISG+V+ G +  A+ LF +++R     D  +  S L+AC   G
Sbjct: 230 VLFNRIPERDVVSWNAMISGHVRCGSHVYAMELFEQMQRMGQKPDVVTMLSLLSACADSG 289

Query: 119 SLQLGMAIHSKIVKYSLERG--VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
            + +G  +HS + +  L  G  V++ N LIDMY KCGS++ A+ VF  M DKD+ +WNS+
Sbjct: 290 DIDVGRRLHSSLSEMFLRTGFTVILGNALIDMYAKCGSMKSALQVFWVMRDKDVSTWNSI 349

Query: 177 IAASARNGN----LELAFGFLHRLPNPDTISYNEVINGIAQFGDIE 218
           I   A +G+    +++    L     PD I++  V+   +  G ++
Sbjct: 350 IGGLALHGHVLESIDVFKKMLKEKVRPDEITFVAVLIACSHGGMVD 395


>gi|302818269|ref|XP_002990808.1| hypothetical protein SELMODRAFT_132472 [Selaginella moellendorffii]
 gi|300141369|gb|EFJ08081.1| hypothetical protein SELMODRAFT_132472 [Selaginella moellendorffii]
          Length = 484

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 152/468 (32%), Positives = 234/468 (50%), Gaps = 28/468 (5%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           Y K  SL +A   F  I  P++ SW  LI+ Y Q+G   +AL  F ++    I A+A +F
Sbjct: 2   YGKCGSLPEAWDCFARIALPNLYSWTILITAYAQNGHLDEALVFFSKMALEGIKANAITF 61

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
             A+ AC  LG  + G A+H  +V        ++ N LI MYGKC  ++ A   F E+  
Sbjct: 62  VVAINACAMLGDPRRGKALHDFLVPCGFFDSSLVGNSLIHMYGKCRDLDAAKSAFNELKK 121

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLP-NPDTISYNEVINGIAQFGDIEDAIM---- 222
           KD+++WNS+I+A A+NG  + A    + +   PD I+Y   I   A   D+E A+     
Sbjct: 122 KDVVTWNSIISAYAQNGRGKEALELYNDMDWTPDKITYVGAIEACASSQDLEQAVQTDVV 181

Query: 223 --------------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS-K 261
                               +  SM   N  +WN I+  Y  +    EAL LF  +++ K
Sbjct: 182 VCNTLLSMYAKCGASAHARAVFESMSRRNVITWNGIMKAYALQGEFGEALALFQRLEAEK 241

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           +V  D  TF   +   A    L  G  IH+ V+  GLD  +++ + L++MY KCGQV  A
Sbjct: 242 EVKPDRVTFVVAIDCCACKPCLEEGRRIHASVVASGLDLDLIIGNTLVNMYGKCGQVGTA 301

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  +++VTW++++  YA NG   + +ELF +L      +P+ VTFL VL ACSH
Sbjct: 302 RGLFDKMVVRDVVTWSSLLATYASNGHGMEGLELF-RLMQQDYTEPNEVTFLGVLFACSH 360

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
                +  S Y  +M +DYG+ P  EH   +I L+ + G +  A+ ++R L F    V+ 
Sbjct: 361 LGFVRESKS-YLFAMQRDYGLTPGQEHFSCVIDLLARSGRLDEAEELVRGLPFQPDNVIV 419

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD 489
            +LL A     DL     +A  V  L+      YV+L N++ + G+WD
Sbjct: 420 TSLLGACTTQGDLKRGIRAAELVFGLDASDQVPYVLLWNIFAAAGHWD 467



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 53/272 (19%)

Query: 148 MYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTIS 203
           MYGKCGS+ +A   F  +   ++ SW  +I A A+NG+L+ A  F  ++       + I+
Sbjct: 1   MYGKCGSLPEAWDCFARIALPNLYSWTILITAYAQNGHLDEALVFFSKMALEGIKANAIT 60

Query: 204 YNEVINGIAQFG-----------------------------------DIEDAIMILSSMP 228
           +   IN  A  G                                   D++ A    + + 
Sbjct: 61  FVVAINACAMLGDPRRGKALHDFLVPCGFFDSSLVGNSLIHMYGKCRDLDAAKSAFNELK 120

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             +  +WNSI++ Y    R  EAL L+ +M   D   D+ T+   +   A    L     
Sbjct: 121 KKDVVTWNSIISAYAQNGRGKEALELYNDM---DWTPDKITYVGAIEACASSQDL----- 172

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
                 +Q +   +VV + LL MY+KCG    A ++F S+ R+N++TWN ++  YA  G+
Sbjct: 173 ------EQAVQTDVVVCNTLLSMYAKCGASAHARAVFESMSRRNVITWNGIMKAYALQGE 226

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             + + LF++L+  ++++PD VTF+  +  C+
Sbjct: 227 FGEALALFQRLEAEKEVKPDRVTFVVAIDCCA 258



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 98/417 (23%), Positives = 176/417 (42%), Gaps = 57/417 (13%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV 69
           + A + LG     + LH +++  GF  +  V  +L+  Y K   L  A   F E+ +  V
Sbjct: 65  INACAMLGDPRRGKALHDFLVPCGFFDSSLVGNSLIHMYGKCRDLDAAKSAFNELKKKDV 124

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
           V+WNS+IS Y Q+G+ ++AL L+ +++ +    D  ++  A+ AC             S+
Sbjct: 125 VTWNSIISAYAQNGRGKEALELYNDMDWT---PDKITYVGAIEACAS-----------SQ 170

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
            ++ +++  VV+ N L+ MY KCG+   A  VF  M  +++I+WN ++ A A  G    A
Sbjct: 171 DLEQAVQTDVVVCNTLLSMYAKCGASAHARAVFESMSRRNVITWNGIMKAYALQGEFGEA 230

Query: 190 FGFLHRLP-----NPDTISY-----------------------------------NEVIN 209
                RL       PD +++                                   N ++N
Sbjct: 231 LALFQRLEAEKEVKPDRVTFVVAIDCCACKPCLEEGRRIHASVVASGLDLDLIIGNTLVN 290

Query: 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
              + G +  A  +   M   +  +W+S+L  Y +     E L LF  MQ      +E T
Sbjct: 291 MYGKCGQVGTARGLFDKMVVRDVVTWSSLLATYASNGHGMEGLELFRLMQQDYTEPNEVT 350

Query: 270 FSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           F  +L   + L  +      + +     GL       S ++D+ ++ G+++ A+ + R L
Sbjct: 351 FLGVLFACSHLGFVRESKSYLFAMQRDYGLTPGQEHFSCVIDLLARSGRLDEAEELVRGL 410

Query: 329 -CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV-RDLQPDSVTFLNVLAACSHTD 383
             + + V   +++      GDL + I   E +  +    Q   V   N+ AA  H D
Sbjct: 411 PFQPDNVIVTSLLGACTTQGDLKRGIRAAELVFGLDASDQVPYVLLWNIFAAAGHWD 467


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 152/493 (30%), Positives = 263/493 (53%), Gaps = 36/493 (7%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H  ++++G   + F+   L+    K +++  A ++F     P+V  + +LI G+V SG 
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           Y  A+ L+  +    I  D Y   S L ACG   +L+ G  +HS+ +K  L    ++   
Sbjct: 128 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLR 187

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISY 204
           ++++YGKCG + DA  VF EM  +D+++   +I++ +  G +E A     R+   DT+  
Sbjct: 188 IMELYGKCGELGDARRVFEEM-PEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVC- 245

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
                                         W +++ G+V    +  AL  F  MQ ++V 
Sbjct: 246 ------------------------------WTAMIDGFVRNEEMNRALEAFRGMQGENVR 275

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
            +E+T   +LS  + L AL  G  +HS + K  ++ ++ V +AL++MYS+CG ++ A ++
Sbjct: 276 PNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTV 335

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
           F  +  ++++T+N MI+G + NG   + IELF ++   R L+P +VTF+ VL ACSH  +
Sbjct: 336 FDEMKDRDVITYNTMISGLSMNGKSRQAIELF-RVMIGRRLRPTNVTFVGVLNACSHGGL 394

Query: 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRAL 444
             D   + F SMT+DYG++P +EH   M+ L+G+ G +  A  +IR +      ++   L
Sbjct: 395 -VDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTL 453

Query: 445 LSASGACSDLDVARISAAEVIKLEGDSDY-VYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           LSA     +L++     A+V++  G +D   YV+L ++Y S G W  A+ +R  M+E G+
Sbjct: 454 LSACKMHKNLELGE-QVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 512

Query: 504 RKEAGCSWIEVEN 516
           +KE GCS IEV N
Sbjct: 513 QKEPGCSSIEVNN 525



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 148/325 (45%), Gaps = 42/325 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y++  +L+A          +++H   LK G  SN  V   +M  Y K   L DA ++
Sbjct: 145 PDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRV 204

Query: 61  FVEIPQPSVVS------------------------------WNSLISGYVQSGKYRKALN 90
           F E+P+  V S                              W ++I G+V++ +  +AL 
Sbjct: 205 FEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALE 264

Query: 91  LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
            F  ++   +  + ++    L+AC QLG+L++G  +HS + K+ +E  + + N LI+MY 
Sbjct: 265 AFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYS 324

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPNPDTISYNE 206
           +CGS+++A  VF EM D+D+I++N++I+  + NG     +EL    + R   P  +++  
Sbjct: 325 RCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVG 384

Query: 207 VINGIAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           V+N  +  G ++    I  SM       P    +  ++       R+ EA  L   M  K
Sbjct: 385 VLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTM--K 442

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWG 286
             P D     T+LS       L  G
Sbjct: 443 MTP-DHIMLGTLLSACKMHKNLELG 466


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 147/496 (29%), Positives = 267/496 (53%), Gaps = 12/496 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q ++ ++LK GF  ++ V  +++  + +   +  A + F E+ +  +VSWN +ISGY  +
Sbjct: 121 QAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNN 180

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE-RGVVI 141
            +   A   F  +    +     S+TS +      G ++ G    ++++  S+  + +  
Sbjct: 181 DRVDIARKFFDRMPERNVV----SWTSMIC-----GYVKAGDMAEAQVLFDSMPVKDLAS 231

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
            N ++  Y   G   +A  +FG+M   D  SWN +I+   + G LE A  F  R+PN + 
Sbjct: 232 WNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNV 291

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
           IS+  +++G  + GD   A  +   MP  N  +W++++ GY    +  +AL LF   + +
Sbjct: 292 ISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQ 351

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           D+  DE     ++S  + L  +     I    +   L + + V ++L+DMY+KCG +E A
Sbjct: 352 DIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKA 411

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             MF     K+L+ ++ MI   A +G     I LF++++   +++PDSVTFL VL AC+H
Sbjct: 412 LQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRA-NIKPDSVTFLGVLTACNH 470

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  D+  +YF+ MT+++GI+P+ +H   ++ L+G+ G +  A  +IR +    + VVW
Sbjct: 471 GGL-VDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVW 529

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL+A     ++ +A ++AAE+ K+E D+   Y++L N+Y + G W   + +R  +RE 
Sbjct: 530 GALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREH 589

Query: 502 GLRKEAGCSWIEVENV 517
            +RK  G SWIE+ +V
Sbjct: 590 RVRKNRGSSWIELSHV 605



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 195/356 (54%), Gaps = 9/356 (2%)

Query: 29  ILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKA 88
           +++S   S+ FV   L+  Y +  +   AHK+F EI QP+   W SLI GYV++ +Y +A
Sbjct: 26  LIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEA 85

Query: 89  LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
            +LF+++ R  I    ++ +S L A  +L   + G A++  ++KY     +++ N ++D+
Sbjct: 86  FSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDL 145

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVI 208
           + +C  V+ A   F EM +KDI+SWN +I+    N  +++A  F  R+P  + +S+  +I
Sbjct: 146 FMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMI 205

Query: 209 NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268
            G  + GD+ +A ++  SMP  + +SWN +++GY++      A  +FG+M   D      
Sbjct: 206 CGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTG---- 261

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           +++ M+SG      L            +  + +++    +LD Y K G    A  +F  +
Sbjct: 262 SWNIMISGFCKAGELESA----KDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQM 317

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
             KNLVTW+ MI GYARNG   K +ELFE+ K  +D++PD    L +++ACS   I
Sbjct: 318 PMKNLVTWSTMIGGYARNGQPLKALELFERFKE-QDIKPDETFILGIISACSQLGI 372


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 145/493 (29%), Positives = 258/493 (52%), Gaps = 38/493 (7%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H  I+ SGF  +  + T L+  Y   +    A  +F   P PS + WNS+I  Y +S 
Sbjct: 70  QIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSK 128

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           +Y +AL ++                                  +  + K  LER V I  
Sbjct: 129 QYNEALEMY----------------------------------YCMVEKGGLERDVFIGA 154

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS 203
            L+DMY K G ++ A  VF +M  +D+++WN++IA  +++ +  +A     ++ + D +S
Sbjct: 155 GLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVS 214

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
           +  ++ G A  G   + + +   M   N + WN I+  Y+      EA+  F +M+ ++ 
Sbjct: 215 WGTMMAGYAHNGCFVEVLELFDKMKLGNVT-WNVIIAAYMQNGHAKEAISSFHQMRLENF 273

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             +  TF ++L   A L+A   GM  H+C+I+ G  ++ +V ++L+DMY+KCGQ++ ++ 
Sbjct: 274 HPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEK 333

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F  +  K+ V+WNAM++GYA +G   + I LF  ++  + +Q DSV+F++VL+AC H  
Sbjct: 334 LFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQ-VQIDSVSFVSVLSACRHAG 392

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
           +  ++  + F SM+  Y IKP +EH   M+ L+G+ G        I+ +       VW A
Sbjct: 393 L-VEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGA 451

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           LL +    S++ +  ++   ++KLE  +   +V+L ++Y   G W  A   R+ M + GL
Sbjct: 452 LLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGL 511

Query: 504 RKEAGCSWIEVEN 516
           +K  GCSW+E++N
Sbjct: 512 KKTPGCSWVELKN 524



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 7/233 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      +L A++ L         H  I++ GFLSN  V  +L+  Y K   L  + K+
Sbjct: 275 PNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKL 334

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+     VSWN+++SGY   G   +A+ LF  ++ S++  D+ SF S L+AC   G +
Sbjct: 335 FNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLV 394

Query: 121 QLGMAI-HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G  I HS   KY ++  +    C++D+ G+ G  ++ +G    M ++ D   W +++ 
Sbjct: 395 EEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLG 454

Query: 179 ASARNGNL---ELAFGFLHRLPNPDTISYNEVINGI-AQFGDIEDAIMILSSM 227
           +   + N+   E+A   L +L  P   ++  V++ I AQ G   DA    S M
Sbjct: 455 SCRMHSNVKLGEVALDHLVKL-EPRNPAHFVVLSSIYAQSGRWADAGKARSKM 506



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 115/270 (42%), Gaps = 65/270 (24%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLI------ 76
           +  +C + K G   +VF+   L+  Y K+  L  A ++F ++P+  VV+WN++I      
Sbjct: 135 EMYYCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQS 194

Query: 77  -------------------------SGYVQSGKYRKALNLFVELERSEI----------- 100
                                    +GY  +G + + L LF +++   +           
Sbjct: 195 EDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQ 254

Query: 101 -------------------YADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
                              + ++ +F S L A   L + + GMA H+ I++       ++
Sbjct: 255 NGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLV 314

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP-- 199
            N LIDMY KCG ++ +  +F EM  KD +SWN++++  A +G+ + A      +     
Sbjct: 315 GNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQV 374

Query: 200 --DTISYNEVINGIAQFGDIEDAIMILSSM 227
             D++S+  V++     G +E+   I  SM
Sbjct: 375 QIDSVSFVSVLSACRHAGLVEEGRKIFHSM 404


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 156/550 (28%), Positives = 273/550 (49%), Gaps = 66/550 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P ++ L ++L + +  G     +++H +++K G  + V V+ +L+  Y K   L  A  +
Sbjct: 105 PTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVV 164

Query: 61  FVE-------------------------------IPQPSVVSWNSLISGYVQSGKYRKAL 89
           F                                 + +  +VSWNS+I+G  Q G   +AL
Sbjct: 165 FDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEAL 224

Query: 90  NLFVE-LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
             F   L+ + +  D +S  SAL+AC  L  L  G  IH  IV+   +    + N LI M
Sbjct: 225 QFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISM 284

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVI 208
           Y K G VE         I + II  + +                     + D I++  ++
Sbjct: 285 YAKSGGVE---------IARRIIEQSGI--------------------SDLDVIAFTALL 315

Query: 209 NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268
           NG  + GDI  A  I +S+  P+  +W +++ GYV      +A+ +F  M S+    + +
Sbjct: 316 NGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSF 375

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           T + MLS  + +++L  G  IH+  I+ G   S  V +AL  MY+K G +  A  +F +L
Sbjct: 376 TLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVF-NL 434

Query: 329 CRKN--LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
            R+N   V+W +MI   A++G   + IELFEQ+ T+  ++PD +T++ VL+AC+H  +  
Sbjct: 435 LRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTL-GIKPDHITYVGVLSACTHGGL-V 492

Query: 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
           ++   YF+ M   + I PT+ H   M+ L G+ G +  A + +  +      + W +LLS
Sbjct: 493 EQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLS 552

Query: 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506
           +     ++D+A+++A  ++ +E ++   Y  L N+Y+S G WD A+ +R  M+ RG++KE
Sbjct: 553 SCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKE 612

Query: 507 AGCSWIEVEN 516
            G SW++++N
Sbjct: 613 QGLSWVQIQN 622



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 180/372 (48%), Gaps = 39/372 (10%)

Query: 35  LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE 94
           +   F    ++  Y K   L  AH++F  IP    VSW ++I GY Q G++  A+ +FV+
Sbjct: 38  VKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVD 97

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           + + ++    ++ T+ LA+C   GS  +G  +HS +VK  L   V +AN L++MY K G 
Sbjct: 98  MVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGD 157

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQF 214
           ++ A  VF  M  ++  SWN++I+     G ++LA      L   D +S+N +I G  Q 
Sbjct: 158 LKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQH 217

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G   +A+   SS+                              ++   +  D ++ ++ L
Sbjct: 218 GFDNEALQFFSSI------------------------------LKDTSLKPDRFSLASAL 247

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS--LCRKN 332
           S  A L  L++G  IH  +++   DAS  V +AL+ MY+K G VEIA  +     +   +
Sbjct: 248 SACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLD 307

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392
           ++ + A++ GY + GD+T   ++F  LK      PD V +  ++       +  D + E 
Sbjct: 308 VIAFTALLNGYVKLGDITPARQIFNSLK-----DPDVVAWTAMIVGYVQNGLNNDAI-EV 361

Query: 393 FESMTKDYGIKP 404
           F++M  + G +P
Sbjct: 362 FKTMVSE-GPRP 372



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 178/383 (46%), Gaps = 59/383 (15%)

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
           +VK  L   V + N L+++Y K G   DA  +F EM                        
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEM------------------------ 36

Query: 190 FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
                  P   T S+N +++G A+ G +E A  +   +P  +S SW +I+ GY    R  
Sbjct: 37  -------PVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFE 89

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
           +A+ +F +M    V   ++T + +L+  A   +   G  +HS V+K GL A + VA++LL
Sbjct: 90  DAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLL 149

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
           +MY+K G +++A  +F  +  +N  +WNAMI+ +   G +   +  FE L      + D 
Sbjct: 150 NMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLS-----ERDI 204

Query: 370 VTFLNVLAACSHTDIPFDKVS-EYFESMTKDYGIKP-------TVEHCCSMIRL-MGQKG 420
           V++ +++A C+     FD  + ++F S+ KD  +KP        +  C ++ +L  G++ 
Sbjct: 205 VSWNSMIAGCNQHG--FDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQI 262

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY---VYVM 477
             +  + M     F + G V  AL+S       +++AR     +I+  G SD     +  
Sbjct: 263 HGYIVRTM-----FDASGAVGNALISMYAKSGGVEIAR----RIIEQSGISDLDVIAFTA 313

Query: 478 LCNLYTSHGNWDVASVMRNFMRE 500
           L N Y   G+   A  + N +++
Sbjct: 314 LLNGYVKLGDITPARQIFNSLKD 336


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 147/532 (27%), Positives = 263/532 (49%), Gaps = 42/532 (7%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H  ++K GF S V V   L+  Y       +A+ +F ++P   ++SWNSL++ +V  G+
Sbjct: 373 IHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGR 432

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
              AL L   +  S    +  +FTSALAAC      + G  +H  +V   L    +I N 
Sbjct: 433 SLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA 492

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR--------- 195
           L+ MYGK G + ++  V  +M  +D+++WN++I   A + + + A               
Sbjct: 493 LVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSN 552

Query: 196 ------------LP-------------------NPDTISYNEVINGIAQFGDIEDAIMIL 224
                       LP                     D    N +I   A+ GD+  +  + 
Sbjct: 553 YITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLF 612

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
           + + + N  +WN++L    +     E L L  +M+S  V +D+++FS  LS  A L+ L 
Sbjct: 613 NGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLE 672

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  +H   +K G +    + +A  DMYSKCG++     M      ++L +WN +I+   
Sbjct: 673 EGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALG 732

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           R+G   +V   F ++  +  ++P  VTF+++L ACSH  +  DK   Y++ + +D+G++P
Sbjct: 733 RHGYFEEVCATFHEMLEM-GIKPGHVTFVSLLTACSHGGL-VDKGLAYYDMIARDFGLEP 790

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
            +EHC  +I L+G+ G +  A+  I ++      +VWR+LL++     +LD  R +A  +
Sbjct: 791 AIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENL 850

Query: 465 IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            KLE + D VYV+  N++ + G W+    +R  M  + ++K+  CSW+++++
Sbjct: 851 SKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKD 902



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/395 (28%), Positives = 191/395 (48%), Gaps = 65/395 (16%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H ++ KSG LS+V+VSTA++  Y     ++ + K+F E+P  +VVSW SL+ GY   G
Sbjct: 195 QVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKG 254

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           +  + +         +IY D                  LG  I  ++VK  LE  + + N
Sbjct: 255 EPEEVI---------DIYKDE----------------SLGRQIIGQVVKSGLESKLAVEN 289

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF------LHRLP 197
            LI M G  G+V+ A  +F +M ++D ISWNS+ AA A+NG++E +F         H   
Sbjct: 290 SLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEV 349

Query: 198 NPDTISY---------------------------------NEVINGIAQFGDIEDAIMIL 224
           N  T+S                                  N ++   A  G   +A ++ 
Sbjct: 350 NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVF 409

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             MP+ +  SWNS++  +VN  R  +AL L   M S    ++  TF++ L+         
Sbjct: 410 KQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFE 469

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G ++H  V+  GL  + ++ +AL+ MY K G++  +  +   + R+++V WNA+I GYA
Sbjct: 470 KGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYA 529

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            + D  K +  F+ ++ V  +  + +T ++VL+AC
Sbjct: 530 EDEDPDKALAAFQTMR-VEGVSSNYITVVSVLSAC 563



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 121/484 (25%), Positives = 231/484 (47%), Gaps = 29/484 (5%)

Query: 14  SDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWN 73
           S +  +T  + +H   +K     +V  +  L+  Y K   +  A  +F  +P  + VSWN
Sbjct: 83  SQITIETTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWN 142

Query: 74  SLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL-QLGMAIHSKIVK 132
           +++SG V+ G Y + +  F ++    I   ++   S + ACG+ GS+ + G+ +H  + K
Sbjct: 143 TMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAK 202

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE----- 187
             L   V ++  ++ +YG  G V  +  VF EM D++++SW S++   +  G  E     
Sbjct: 203 SGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDI 262

Query: 188 -----LAFGFLHRLPNPDTISY----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
                L    + ++      S     N +I+ +   G+++ A  I   M   ++ SWNSI
Sbjct: 263 YKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSI 322

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
              Y     + E+  +F  M+     ++  T ST+LS +  +    WG  IH  V+K G 
Sbjct: 323 AAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGF 382

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
           D+ + V + LL MY+  G+   A+ +F+ +  K+L++WN+++  +  +G     + L   
Sbjct: 383 DSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCS 442

Query: 359 L----KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
           +    K+V     + VTF + LAAC   D  F+K       +    G+        +++ 
Sbjct: 443 MISSGKSV-----NYVTFTSALAACFTPDF-FEK-GRILHGLVVVSGLFYNQIIGNALVS 495

Query: 415 LMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG-DSDY 473
           + G+ GE+  ++R++ ++      V W AL+       D D A ++A + +++EG  S+Y
Sbjct: 496 MYGKIGEMSESRRVLLQMPRRDV-VAWNALIGGYAEDEDPDKA-LAAFQTMRVEGVSSNY 553

Query: 474 VYVM 477
           + V+
Sbjct: 554 ITVV 557



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 187/398 (46%), Gaps = 41/398 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+   ++KSG  S + V  +L+     + ++  A+ +F ++ +   +SWNS+ + Y Q+
Sbjct: 270 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQN 329

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   ++  +F  + R     ++ + ++ L+  G +   + G  IH  +VK   +  V + 
Sbjct: 330 GHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVC 389

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF---------- 192
           N L+ MY   G   +A  VF +M  KD+ISWNS++A+   +G    A G           
Sbjct: 390 NTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKS 449

Query: 193 ------------------------LHRLPNPDTISYNEVINGI-----AQFGDIEDAIMI 223
                                   LH L     + YN++I         + G++ ++  +
Sbjct: 450 VNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRV 509

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG-IAGLSA 282
           L  MP  +  +WN+++ GY       +AL  F  M+ + V  +  T  ++LS  +     
Sbjct: 510 LLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDL 569

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G  +H+ ++  G ++   V ++L+ MY+KCG +  +  +F  L  +N++TWNAM+  
Sbjct: 570 LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAA 629

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            A +G   +V++L  ++++   +  D  +F   L+A +
Sbjct: 630 NAHHGHGEEVLKLVSKMRSF-GVSLDQFSFSEGLSAAA 666



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 98/227 (43%), Gaps = 5/227 (2%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV 69
           L A++ L      QQLH   +K GF  + F+  A    Y K   + +  KM       S+
Sbjct: 662 LSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSL 721

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
            SWN LIS   + G + +    F E+    I     +F S L AC   G +  G+A +  
Sbjct: 722 PSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDM 781

Query: 130 IVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLE 187
           I + + LE  +    C+ID+ G+ G + +A     +M +  + + W S++A+   +GNL+
Sbjct: 782 IARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLD 841

Query: 188 L---AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
               A   L +L   D   Y    N  A  G  ED   +   M   N
Sbjct: 842 RGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKN 888



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 113/237 (47%), Gaps = 14/237 (5%)

Query: 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335
           G + ++  T G  +H+  +K  +  S++  + L++MY+K G+V+ A  +F  +  +N V+
Sbjct: 81  GFSQITIETTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVS 140

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFES 395
           WN M++G  R G   + +E F ++  +  ++P S    +++ AC  +   F +  +    
Sbjct: 141 WNTMMSGIVRVGLYLEGMEFFRKMCDL-GIKPSSFVIASLVTACGRSGSMFREGVQVHGF 199

Query: 396 MTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL---SASGAC- 451
           + K  G+   V    +++ L G  G V  ++++  E+   +  V W +L+   S  G   
Sbjct: 200 VAKS-GLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNV-VSWTSLMVGYSDKGEPE 257

Query: 452 ------SDLDVARISAAEVIKLEGDSDY-VYVMLCNLYTSHGNWDVASVMRNFMRER 501
                  D  + R    +V+K   +S   V   L ++  S GN D A+ + + M ER
Sbjct: 258 EVIDIYKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSER 314


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 153/465 (32%), Positives = 242/465 (52%), Gaps = 41/465 (8%)

Query: 83  GKYRKALNLFVELERSEIYADAYSF-TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           G  R AL  F  + R + +   YSF   AL+A G    +    A+HS +VK        +
Sbjct: 419 GAPRDALAAFSAMPRRDSFT--YSFLIKALSAAG----VAPVRAVHSHVVKLGSVEDTFV 472

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
            N LID Y K G   DA  VF EM ++D++SWN+ +AA  R G L         +P  DT
Sbjct: 473 GNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDT 532

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR----------NRVP-- 249
           +S+N +++G  + G++E A  +   MP  N  SW+++++GY  +          +++P  
Sbjct: 533 VSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSK 592

Query: 250 -------------------EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
                              EA  LF +M+   V +D     ++L+  A   +L+ G  IH
Sbjct: 593 NLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIH 652

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS-LCRKNLVTWNAMITGYARNGDL 349
             V K+ L  S  V +AL+DM+ KCG V  AD +F +   +K+ V+WN++I G+A +G  
Sbjct: 653 RYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHG 712

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409
            K +ELF Q+K  +   PD+VT +NVL+AC+H     D+   +F +M +DYGI P +EH 
Sbjct: 713 DKALELFAQMKQ-QGFNPDAVTMINVLSACTHMGF-VDEGRRHFSNMERDYGIMPQIEHY 770

Query: 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469
             MI L+G+ G +  A  +I+ + +    V+W +LLSA     +++ A I+  E+ KL+ 
Sbjct: 771 GCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQP 830

Query: 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
            +   Y +L N+Y   G W   +  R  M+  G +K AG SW+E+
Sbjct: 831 SNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVEL 875



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 5/196 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV   + ++  Y K   L  A  +F ++P  ++V+W  ++S   Q G   +A  LF +++
Sbjct: 562 NVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMK 621

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
            + +  D  +  S LAAC + GSL LG  IH  + K +L R   + N LIDM+ KCG V 
Sbjct: 622 EASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVN 681

Query: 157 DAIGVFG-EMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGI 211
            A  VF  E + KD +SWNS+I   A +G+ + A     ++     NPD ++   V++  
Sbjct: 682 RADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSAC 741

Query: 212 AQFGDIEDAIMILSSM 227
              G +++     S+M
Sbjct: 742 THMGFVDEGRRHFSNM 757


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 241/459 (52%), Gaps = 11/459 (2%)

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVEL--ERSEIYADAYSFTSALAACGQLGSLQL 122
           P  + V +N L+ G   +  +R AL LF  +  +    + D Y++  AL +C     L L
Sbjct: 81  PDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVL 140

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR 182
           G  IHS   +  L+  V +A+  I MY +CG  +DA  +F EM  +D++SWN++I+  A 
Sbjct: 141 GRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAH 200

Query: 183 NGNLELAFGFLHRL-----PNPDTISYNEVIN--GIAQFGDIEDAIMILSSMPSPNSSSW 235
            G    A      L     P PD  +   ++   G A+  DI     +   M      SW
Sbjct: 201 AGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISW 260

Query: 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
           N++L  Y N     EA+ LF  MQ   +  D  T +T+L     +SAL+ G  IH  + +
Sbjct: 261 NAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKR 320

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
           + + +S+++ +AL+DMY+ CG ++ A  +F S+  +++V+W ++I+ Y R+G   + I+L
Sbjct: 321 RRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDL 380

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415
           FE++   + L+PDS+ F+ +LAACSH  +  D    YF SMT ++ I P +EH   M+ L
Sbjct: 381 FEKM-CGQGLEPDSIAFVAILAACSHAGL-LDMGKHYFYSMTSEFHIAPKLEHYACMVDL 438

Query: 416 MGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475
           +G+ G +  A   I  +       VW ALL A    S++D+  ++A  +++L       Y
Sbjct: 439 LGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYY 498

Query: 476 VMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           V+L N+Y   G W   S++R+ M  +G++K  G S  E+
Sbjct: 499 VLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAEL 537



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 139/299 (46%), Gaps = 31/299 (10%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           L C    +G ++++  S   MG  R +  +A    +F E+    ++SWN++++ Y  +  
Sbjct: 217 LQCPKPDAGTMASILPS---MGKAR-VEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEM 272

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           + +A+ LF+ +++  I  DA +  + L +CG++ +L LG  IH  I +  +   +++ N 
Sbjct: 273 HVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENA 332

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPD 200
           L+DMY  CG +++A  VF  M  +D++SW S+I+A  R+G+   A     ++      PD
Sbjct: 333 LMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPD 392

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPS-----PNSSSWNSILTGYVNRNRVPEALHLF 255
           +I++  ++   +  G ++       SM S     P    +  ++        + EA    
Sbjct: 393 SIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFI 452

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
             M  K  P +                  WG L+ +C I   +D  ++ A +LL +  K
Sbjct: 453 MVMPIK--PNER----------------VWGALLGACRIHSNMDIGLLAADSLLRLAPK 493



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 133/295 (45%), Gaps = 11/295 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y     L++ +        +Q+H    + G   NVFV+ + +  Y +     DA++M
Sbjct: 120 PDHYTYPLALKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQM 179

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEI-YADAYSFTSALAACGQLGS 119
           F E+    VVSWN++ISG+  +G + +A+++F EL   +    DA +  S L + G+  +
Sbjct: 180 FEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGK--A 237

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM----IDKDIISWNS 175
               +A+   +      +G++  N ++ +Y       +A+ +F  M    I+ D ++  +
Sbjct: 238 RVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLAT 297

Query: 176 VIAASARNGNLELAFGFLHRLPNPDTIS----YNEVINGIAQFGDIEDAIMILSSMPSPN 231
           V+ +      L L       +      S     N +++  A  G +++A  +  SM + +
Sbjct: 298 VLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRD 357

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
             SW SI++ Y       EA+ LF +M  + +  D   F  +L+  +    L  G
Sbjct: 358 VVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMG 412



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 5/234 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L +  ++   +  +++H  I +    S++ +  ALM  Y     L +A  +
Sbjct: 290 PDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDV 349

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    VVSW S+IS Y + G  R+A++LF ++    +  D+ +F + LAAC   G L
Sbjct: 350 FDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLL 409

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
            +G    +S   ++ +   +    C++D+ G+ G + +A      M I  +   W +++ 
Sbjct: 410 DMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLG 469

Query: 179 ASARNGNLE---LAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           A   + N++   LA   L RL    T  Y  + N  A+ G   D  M+ S M S
Sbjct: 470 ACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMES 523


>gi|225217042|gb|ACN85326.1| EMB2261 putative [Oryza brachyantha]
          Length = 626

 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 163/537 (30%), Positives = 275/537 (51%), Gaps = 51/537 (9%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKI-NSLADAHKMFVEIPQPSVVSWNSLISGY 79
           YC  +H    + G L++ +++ AL+ FY ++   L  A + F ++P+  VV+ +S+++ +
Sbjct: 57  YC--IHARAARGGLLADRYLANALLSFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAAF 114

Query: 80  VQSGKYRKALNLFVEL--ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER 137
           +++G  R+AL     +  E  ++  +A++F++A+ AC  L     G  +H  I+      
Sbjct: 115 LRAGMPRRALASLRSMLAEADDVSPNAHAFSAAVKACSVLRDRNAGACLHGSILVRGFGD 174

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN-------------- 183
             ++ + L+DMYG   +  DA   F EM   D I + S+I+A  RN              
Sbjct: 175 DDIVLSALVDMYGHASAPSDAQKAFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSML 234

Query: 184 ------------GNLELAFGFLHRLPNPDTISYNEVINGI--------------AQFGDI 217
                       G++  A G L R           V  G+              A+ G +
Sbjct: 235 MMNGVRPDGCTFGSMMTALGNLKRENQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGSM 294

Query: 218 EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277
            +A  +   M   N  SW ++L GY       + + LF EM  KD   D Y+  T+L   
Sbjct: 295 VEARKVFDRMLVRNEVSWCALLGGYCQNGEYEKVVALFREMDKKD--GDWYSLGTVLRAC 352

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
           AGLS++  G  IH   ++ G    +VV SAL+D+Y+KCG V+ A ++F +   +N +TWN
Sbjct: 353 AGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYAYTVFEASTVRNTITWN 412

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           AMI G+A+NG   + I LF+++  VR+  +PD ++F++VL ACSHT +  ++  +YF SM
Sbjct: 413 AMIGGFAQNGHGERAINLFDRM--VREGPRPDYISFVSVLFACSHTGM-VEQGRKYFNSM 469

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
           + +Y I P +EH   M+ L+ +   +  A+ +I +  F     +W A+L AS   S+ DV
Sbjct: 470 SNNYTIAPGIEHYNCMVDLLSRVELLEEAEDLINKSPFRGDSSLWAAILGASATHSNPDV 529

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
           A   A ++++L+      YV+L N+Y + G W+ A  +R  M  R ++KE G SWI+
Sbjct: 530 AERVAKKMMELQPQYHLSYVLLENVYRTVGRWEDALEIRRLMESRKVKKEPGMSWID 586



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      ++ A  +L  +   +Q H  ++  G   NV V ++ +  Y K  S+ +A K+
Sbjct: 241 PDGCTFGSMMTALGNLKRENQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGSMVEARKV 300

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   + VSW +L+ GY Q+G+Y K + LF E+++ +   D YS  + L AC  L S+
Sbjct: 301 FDRMLVRNEVSWCALLGGYCQNGEYEKVVALFREMDKKD--GDWYSLGTVLRACAGLSSV 358

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IH + ++    R VV+ + L+D+Y KCG+V+ A  VF     ++ I+WN++I   
Sbjct: 359 KPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYAYTVFEASTVRNTITWNAMIGGF 418

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           A+NG+ E A     R+    P PD IS+  V+   +  G +E      +SM
Sbjct: 419 AQNGHGERAINLFDRMVREGPRPDYISFVSVLFACSHTGMVEQGRKYFNSM 469



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/413 (21%), Positives = 176/413 (42%), Gaps = 55/413 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +     ++A S L        LH  IL  GF  +  V +AL+  Y   ++ +DA K 
Sbjct: 139 PNAHAFSAAVKACSVLRDRNAGACLHGSILVRGFGDDDIVLSALVDMYGHASAPSDAQKA 198

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLGS 119
           F E+  P  + + SLIS +V++  + +A+  F   L  + +  D  +F S + A G L  
Sbjct: 199 FEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLKR 258

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
              G   H+++V   L   V++ +  +DMY KCGS+ +A  VF  M+ ++ +SW +++  
Sbjct: 259 ENQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGSMVEARKVFDRMLVRNEVSWCALLGG 318

Query: 180 SARNGNLELAFGFLHRLPNPDTISY----------------------------------- 204
             +NG  E        +   D   Y                                   
Sbjct: 319 YCQNGEYEKVVALFREMDKKDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVV 378

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             + +++  A+ G ++ A  +  +    N+ +WN+++ G+        A++LF  M  + 
Sbjct: 379 VESALVDLYAKCGAVDYAYTVFEASTVRNTITWNAMIGGFAQNGHGERAINLFDRMVREG 438

Query: 263 VPMDEYTFSTML-----SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
              D  +F ++L     +G+       +  + ++  I  G++      + ++D+ S+   
Sbjct: 439 PRPDYISFVSVLFACSHTGMVEQGRKYFNSMSNNYTIAPGIEHY----NCMVDLLSRVEL 494

Query: 318 VEIADSMF-RSLCRKNLVTWNAMITGYA--RNGDLTKVIELFEQLKTVRDLQP 367
           +E A+ +  +S  R +   W A++   A   N D+ + +      K + +LQP
Sbjct: 495 LEEAEDLINKSPFRGDSSLWAAILGASATHSNPDVAERVA-----KKMMELQP 542



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 145/347 (41%), Gaps = 68/347 (19%)

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS-VEDAIGVFGEMIDKDIISWNSVIAA 179
           +LG  IH++  +  L     +AN L+  Y +    +  A+  F ++  +D+++ +S++AA
Sbjct: 54  RLGYCIHARAARGGLLADRYLANALLSFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAA 113

Query: 180 SARNGNLELAFGFLHR-LPNPDTISYN--------------------EVING---IAQFG 215
             R G    A   L   L   D +S N                      ++G   +  FG
Sbjct: 114 FLRAGMPRRALASLRSMLAEADDVSPNAHAFSAAVKACSVLRDRNAGACLHGSILVRGFG 173

Query: 216 DIE-----------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
           D +                 DA      M +P+   + S+++ +V  +   EA+  F  M
Sbjct: 174 DDDIVLSALVDMYGHASAPSDAQKAFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSM 233

Query: 259 -QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
                V  D  TF +M++ +  L     G   H+ V+ +GL  +++V S+ LDMY+KCG 
Sbjct: 234 LMMNGVRPDGCTFGSMMTALGNLKRENQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGS 293

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +  A  +F  +  +N V+W A++ GY +NG+  KV+ LF ++        D  +   VL 
Sbjct: 294 MVEARKVFDRMLVRNEVSWCALLGGYCQNGEYEKVVALFREMDKK---DGDWYSLGTVLR 350

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424
           AC+                     +KP  E  C  +R+ G     WR
Sbjct: 351 ACAGLS-----------------SVKPGKEIHCRFLRMGG-----WR 375



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 114/235 (48%), Gaps = 13/235 (5%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
           Y L  +LRA + L      +++HC  L+ G   +V V +AL+  Y K  ++  A+ +F  
Sbjct: 343 YSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYAYTVFEA 402

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
               + ++WN++I G+ Q+G   +A+NLF  + R     D  SF S L AC   G ++ G
Sbjct: 403 STVRNTITWNAMIGGFAQNGHGERAINLFDRMVREGPRPDYISFVSVLFACSHTGMVEQG 462

Query: 124 MA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-----DIISWNSVI 177
               +S    Y++  G+   NC++D+  +   +E+A     ++I+K     D   W +++
Sbjct: 463 RKYFNSMSNNYTIAPGIEHYNCMVDLLSRVELLEEA----EDLINKSPFRGDSSLWAAIL 518

Query: 178 AASARNGNLELAFGFLHR---LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
            ASA + N ++A     +   L     +SY  + N     G  EDA+ I   M S
Sbjct: 519 GASATHSNPDVAERVAKKMMELQPQYHLSYVLLENVYRTVGRWEDALEIRRLMES 573


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 147/532 (27%), Positives = 263/532 (49%), Gaps = 42/532 (7%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H  ++K GF S V V   L+  Y       +A+ +F ++P   ++SWNSL++ +V  G+
Sbjct: 266 IHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGR 325

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
              AL L   +  S    +  +FTSALAAC      + G  +H  +V   L    +I N 
Sbjct: 326 SLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA 385

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR--------- 195
           L+ MYGK G + ++  V  +M  +D+++WN++I   A + + + A               
Sbjct: 386 LVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSN 445

Query: 196 ------------LP-------------------NPDTISYNEVINGIAQFGDIEDAIMIL 224
                       LP                     D    N +I   A+ GD+  +  + 
Sbjct: 446 YITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLF 505

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
           + + + N  +WN++L    +     E L L  +M+S  V +D+++FS  LS  A L+ L 
Sbjct: 506 NGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLE 565

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  +H   +K G +    + +A  DMYSKCG++     M      ++L +WN +I+   
Sbjct: 566 EGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALG 625

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           R+G   +V   F ++  +  ++P  VTF+++L ACSH  +  DK   Y++ + +D+G++P
Sbjct: 626 RHGYFEEVCATFHEMLEM-GIKPGHVTFVSLLTACSHGGL-VDKGLAYYDMIARDFGLEP 683

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
            +EHC  +I L+G+ G +  A+  I ++      +VWR+LL++     +LD  R +A  +
Sbjct: 684 AIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENL 743

Query: 465 IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            KLE + D VYV+  N++ + G W+    +R  M  + ++K+  CSW+++++
Sbjct: 744 SKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKD 795



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 201/395 (50%), Gaps = 40/395 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H ++ KSG LS+V+VSTA++  Y     ++ + K+F E+P  +VVSW SL+ GY   G
Sbjct: 63  QVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKG 122

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           +  + ++++  +    +  +  S +  +++CG L    LG  I  ++VK  LE  + + N
Sbjct: 123 EPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVEN 182

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF------LHRLP 197
            LI M G  G+V+ A  +F +M ++D ISWNS+ AA A+NG++E +F         H   
Sbjct: 183 SLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEV 242

Query: 198 NPDTISY---------------------------------NEVINGIAQFGDIEDAIMIL 224
           N  T+S                                  N ++   A  G   +A ++ 
Sbjct: 243 NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVF 302

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             MP+ +  SWNS++  +VN  R  +AL L   M S    ++  TF++ L+         
Sbjct: 303 KQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFE 362

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G ++H  V+  GL  + ++ +AL+ MY K G++  +  +   + R+++V WNA+I GYA
Sbjct: 363 KGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYA 422

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            + D  K +  F+ ++ V  +  + +T ++VL+AC
Sbjct: 423 EDEDPDKALAAFQTMR-VEGVSSNYITVVSVLSAC 456



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 187/398 (46%), Gaps = 41/398 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+   ++KSG  S + V  +L+     + ++  A+ +F ++ +   +SWNS+ + Y Q+
Sbjct: 163 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQN 222

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   ++  +F  + R     ++ + ++ L+  G +   + G  IH  +VK   +  V + 
Sbjct: 223 GHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVC 282

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF---------- 192
           N L+ MY   G   +A  VF +M  KD+ISWNS++A+   +G    A G           
Sbjct: 283 NTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKS 342

Query: 193 ------------------------LHRLPNPDTISYNEVINGI-----AQFGDIEDAIMI 223
                                   LH L     + YN++I         + G++ ++  +
Sbjct: 343 VNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRV 402

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG-IAGLSA 282
           L  MP  +  +WN+++ GY       +AL  F  M+ + V  +  T  ++LS  +     
Sbjct: 403 LLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDL 462

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G  +H+ ++  G ++   V ++L+ MY+KCG +  +  +F  L  +N++TWNAM+  
Sbjct: 463 LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAA 522

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            A +G   +V++L  ++++   +  D  +F   L+A +
Sbjct: 523 NAHHGHGEEVLKLVSKMRSF-GVSLDQFSFSEGLSAAA 559



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 210/455 (46%), Gaps = 46/455 (10%)

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL-QL 122
           +P  + VSWN+++SG V+ G Y + +  F ++    I   ++   S + ACG+ GS+ + 
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR 182
           G+ +H  + K  L   V ++  ++ +YG  G V  +  VF EM D++++SW S++   + 
Sbjct: 61  GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 120

Query: 183 NGNLELAFGFLHRLP------NPDTISY-------------------------------- 204
            G  E        +       N +++S                                 
Sbjct: 121 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAV 180

Query: 205 -NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
            N +I+ +   G+++ A  I   M   ++ SWNSI   Y     + E+  +F  M+    
Sbjct: 181 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD 240

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
            ++  T ST+LS +  +    WG  IH  V+K G D+ + V + LL MY+  G+   A+ 
Sbjct: 241 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANL 300

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F+ +  K+L++WN+++  +  +G     + L   + +      + VTF + LAAC   D
Sbjct: 301 VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMIS-SGKSVNYVTFTSALAACFTPD 359

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
             F+K       +    G+        +++ + G+ GE+  ++R++ ++      V W A
Sbjct: 360 F-FEK-GRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDV-VAWNA 416

Query: 444 LLSASGACSDLDVARISAAEVIKLEG-DSDYVYVM 477
           L+       D D A ++A + +++EG  S+Y+ V+
Sbjct: 417 LIGGYAEDEDPDKA-LAAFQTMRVEGVSSNYITVV 450



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 98/227 (43%), Gaps = 5/227 (2%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV 69
           L A++ L      QQLH   +K GF  + F+  A    Y K   + +  KM       S+
Sbjct: 555 LSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSL 614

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
            SWN LIS   + G + +    F E+    I     +F S L AC   G +  G+A +  
Sbjct: 615 PSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDM 674

Query: 130 IVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLE 187
           I + + LE  +    C+ID+ G+ G + +A     +M +  + + W S++A+   +GNL+
Sbjct: 675 IARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLD 734

Query: 188 L---AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
               A   L +L   D   Y    N  A  G  ED   +   M   N
Sbjct: 735 RGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKN 781


>gi|147834193|emb|CAN75306.1| hypothetical protein VITISV_040403 [Vitis vinifera]
          Length = 826

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 157/555 (28%), Positives = 279/555 (50%), Gaps = 43/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  ++RA S LG +   + +   ++K GF S V V+TAL+GFY   + +    K+
Sbjct: 87  PNHVTVLSVIRAISGLGLEDMMRVICGSVIKLGFESEVSVATALIGFYSDYD-MGIVWKI 145

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F + P   +V W++++S  V+SG+Y +A  +F  ++   +  +  S  S L AC  +G+L
Sbjct: 146 FNQTPIKDLVLWSAMVSACVKSGQYGEAFEIFRAMQYDGVEPNHVSIVSILPACANVGAL 205

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH   +K        + N L+DMY KC + + ++ VF ++++KD+ISW ++I   
Sbjct: 206 LFGKEIHGFSIKKMFHPLTNVHNSLVDMYAKCRNFKASMLVFDQILEKDLISWTTIIRGC 265

Query: 181 ARNGNLELAFGFLHRLP-----NPDTISYNEVI--------------------NGI---- 211
             N     AF    R+        +TI  + ++                    NG+    
Sbjct: 266 IENDCPREAFKAFSRMQFSCFGADETIVQDLIVAIIQADEHKFGIAFHGFLLKNGLLAFV 325

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     A+FG++E AI++   +   +  SW+++++ + +      AL  F +MQS 
Sbjct: 326 SIGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMISVHAHSRHPYNALETFKQMQST 385

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           D   +E TF ++L   + + A   G  I +   K G  ++  ++SAL+D+Y K G++   
Sbjct: 386 DERPNEITFVSLLQACSLIGAQELGESIQAHATKAGYLSNAFLSSALIDLYCKFGRINQG 445

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            ++F  +  K+LV W++MI GY  NG   + +E F  +     ++P+ V F++VL+ACSH
Sbjct: 446 RAIFNEIPTKDLVCWSSMINGYGLNGCGDEALETFSNMLAC-GVKPNEVVFISVLSACSH 504

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  +  S  F SM + YGI P + H   M+ L+ ++G +  A + + ++       +W
Sbjct: 505 CGLEHEGWS-CFSSMEQKYGIIPKLPHYACMVDLISRRGNIEGALQFVNKMPMEPDKRIW 563

Query: 442 RALLSASGAC-SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
            ALL+   +    +++A + A  +I L+  +   YV+L NLY   G W     +R  + E
Sbjct: 564 GALLAGCRSTHGSIEIAELVAERLIGLDPQNTSYYVILSNLYAEQGRWGDVERLRKLVDE 623

Query: 501 RGLRKEAGCSWIEVE 515
           +GL+KE G S IE +
Sbjct: 624 KGLKKEMGYSMIEAQ 638



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 179/386 (46%), Gaps = 44/386 (11%)

Query: 37  NVFV-STALMGFYRKINSLADAHKMFVEI--PQPSVVSWNSLISGYVQSGKYRKALNLFV 93
           NVF+ ++A   +YR + +    ++  VE    + +V+SW S IS  V+  +   A+ LF 
Sbjct: 19  NVFIRNSAYSLYYRSMFNTYAYYEEPVEFHGEKDNVISWTSKISSLVKQNQSELAVGLFK 78

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
            +  +E   +  +  S + A   LG   +   I   ++K   E  V +A  LI  Y    
Sbjct: 79  MMLMTEQRPNHVTVLSVIRAISGLGLEDMMRVICGSVIKLGFESEVSVATALIGFYSDY- 137

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF----------------------- 190
            +     +F +   KD++ W+++++A  ++G    AF                       
Sbjct: 138 DMGIVWKIFNQTPIKDLVLWSAMVSACVKSGQYGEAFEIFRAMQYDGVEPNHVSIVSILP 197

Query: 191 ---------------GF-LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSS 234
                          GF + ++ +P T  +N +++  A+  + + ++++   +   +  S
Sbjct: 198 ACANVGALLFGKEIHGFSIKKMFHPLTNVHNSLVDMYAKCRNFKASMLVFDQILEKDLIS 257

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
           W +I+ G +  +   EA   F  MQ      DE     ++  I       +G+  H  ++
Sbjct: 258 WTTIIRGCIENDCPREAFKAFSRMQFSCFGADETIVQDLIVAIIQADEHKFGIAFHGFLL 317

Query: 295 KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
           K GL A + + +ALL MY+K G++E A  +F  L +K+ ++W+AMI+ +A +      +E
Sbjct: 318 KNGLLAFVSIGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMISVHAHSRHPYNALE 377

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACS 380
            F+Q+++  D +P+ +TF+++L ACS
Sbjct: 378 TFKQMQST-DERPNEITFVSLLQACS 402



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 79/151 (52%), Gaps = 2/151 (1%)

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
           N  SW S ++  V +N+   A+ LF  M   +   +  T  +++  I+GL       +I 
Sbjct: 53  NVISWTSKISSLVKQNQSELAVGLFKMMLMTEQRPNHVTVLSVIRAISGLGLEDMMRVIC 112

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
             VIK G ++ + VA+AL+  YS    + I   +F     K+LV W+AM++   ++G   
Sbjct: 113 GSVIKLGFESEVSVATALIGFYSDY-DMGIVWKIFNQTPIKDLVLWSAMVSACVKSGQYG 171

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           +  E+F  ++    ++P+ V+ +++L AC++
Sbjct: 172 EAFEIFRAMQ-YDGVEPNHVSIVSILPACAN 201


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 158/518 (30%), Positives = 276/518 (53%), Gaps = 14/518 (2%)

Query: 7   FHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ 66
           F L  ++  L  D + QQ+HC  +K GF S++ ++ +L+  Y K  ++  A  +FV +P+
Sbjct: 256 FGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPE 315

Query: 67  PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI 126
            SVVSWN +I+GY Q  +  KA+     ++      D  ++ + L AC + G ++ G  +
Sbjct: 316 VSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQM 375

Query: 127 HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA--SARNG 184
              +   SL       N ++  Y +  + ++A+ +F EM  + +    + +A   S+  G
Sbjct: 376 FDGMSSPSLSSW----NTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAG 431

Query: 185 NLELAFGF-LHRLPNP-----DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
            + L  G  +H +        D    + +I   ++ G +E A  I   +   +   WNS+
Sbjct: 432 MMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSM 491

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           + G    +   EA   F +M+ K +   +++++T+LS  A LS+L+ G  +HS + ++G 
Sbjct: 492 MAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGY 551

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
                V SAL+DMYSKCG V+ A  +F  +  KN VTWN MI GYA+NG   + + L+E 
Sbjct: 552 MNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYED 611

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           +    + +PD +TF+ VL ACSH+ +  D   + F SM +++G++P V+H   +I  +G+
Sbjct: 612 MIGSGE-KPDGITFVAVLTACSHSGL-VDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGR 669

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G +  A+ +I ++      ++W  LLS+    +D+ +AR +A E+  L+  +   YV+L
Sbjct: 670 AGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLL 729

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            N+Y+S G WD A  +R  M    + K+ G SWIE +N
Sbjct: 730 ANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIEHKN 767



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 147/540 (27%), Positives = 253/540 (46%), Gaps = 59/540 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYC-QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P  + L  +L A   L  D  C ++ H   +K G  +N++V  AL+G Y K   + DA +
Sbjct: 135 PTHFTLASVLSACGAL-VDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQ 193

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
            F ++P+P+ VS+ +++ G   S +  +A  LF  + R+ I+ D+ S +S L  C + G 
Sbjct: 194 AFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGC 253

Query: 120 LQLGM--------------AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
            + G+               +H   +K+  E  + + N L+DMY K G+++ A  +F  M
Sbjct: 254 GEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNM 313

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAI 221
            +  ++SWN +IA   +      A  +L R+      PD I+Y  ++    + GDIE   
Sbjct: 314 PEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGR 373

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   M SP+ SSWN+IL+GY       EA+ LF EMQ + V  D  T + +LS +AG+ 
Sbjct: 374 QMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMM 433

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
            L  G  +H+   K      I +AS L+ MYSKCG+VE+A  +F  +   ++V WN+M+ 
Sbjct: 434 LLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMA 493

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G + N    +    F++++  + + P   ++  VL+                        
Sbjct: 494 GLSLNSLDKEAFTFFKKMRE-KGMFPSQFSYATVLS------------------------ 528

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
                  CC+ +  + Q  +V    ++ RE G+ +   V  AL+     C D+D AR   
Sbjct: 529 -------CCAKLSSLSQGRQV--HSQIARE-GYMNDAFVGSALIDMYSKCGDVDAARWVF 578

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAHS 521
             ++   G +   +  + + Y  +G  D A ++   M   G  K  G +++ V    +HS
Sbjct: 579 DMML---GKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSG-EKPDGITFVAVLTACSHS 634



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 173/395 (43%), Gaps = 89/395 (22%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           +++   A++G Y K + L DAH +F E+P+ ++VSWN+LIS   ++G  +KAL ++  + 
Sbjct: 70  DIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMS 129

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           R       ++  S L+ACG L  ++ G   H   +K  L+  + + N L+ MY KC  + 
Sbjct: 130 REGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIG 189

Query: 157 DAIGVFGEM-----------------------------------IDKDIISWNSVIAASA 181
           DAI  FG++                                   I  D +S +SV+   +
Sbjct: 190 DAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCS 249

Query: 182 RNGNLELAFGFLHRLPNPD---------TISY---------NEVINGIAQFGDIEDAIMI 223
           R G  E      + + + D         TI +         N +++  A+ G+++ A MI
Sbjct: 250 RGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMI 309

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
             +MP  +  SWN ++ GY  +++  +A+     MQ      DE T+  ML         
Sbjct: 310 FVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLV-------- 361

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
                  +C+                    K G +E    MF  +   +L +WN +++GY
Sbjct: 362 -------ACI--------------------KSGDIEAGRQMFDGMSSPSLSSWNTILSGY 394

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           ++N +  + ++LF +++  R + PD  T   +L++
Sbjct: 395 SQNENHKEAVKLFREMQ-FRSVHPDRTTLAIILSS 428



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 122/274 (44%), Gaps = 32/274 (11%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
             S L  C    +   G  IH+ +++  L     ++N LI+ Y KC +++ +  +F +M 
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
            +DI +WN+                               ++    +  ++EDA ++ + 
Sbjct: 68  KRDIYTWNA-------------------------------ILGAYCKASELEDAHVLFAE 96

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           MP  N  SWN++++         +AL ++  M  +      +T +++LS    L  +  G
Sbjct: 97  MPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLASVLSACGALVDVECG 156

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
              H   IK GLD +I V +ALL MY+KC  +  A   F  +   N V++ AM+ G A +
Sbjct: 157 RRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADS 216

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
             + +   LF  +   R +  DSV+  +VL  CS
Sbjct: 217 DQVNEAFRLFRLMLRNR-IHVDSVSLSSVLGVCS 249



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 97/191 (50%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +L   + L   +  +Q+H  I + G++++ FV +AL+  Y K   +  A  +
Sbjct: 518 PSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWV 577

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   + V+WN +I GY Q+G   +A+ L+ ++  S    D  +F + L AC   G +
Sbjct: 578 FDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLV 637

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIA 178
             G+ I + + + + +E  V    C+ID  G+ G + +A  +  +M  K D I W  +++
Sbjct: 638 DTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLS 697

Query: 179 ASARNGNLELA 189
           +     ++ LA
Sbjct: 698 SCRVYADVSLA 708


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 156/531 (29%), Positives = 253/531 (47%), Gaps = 70/531 (13%)

Query: 22  CQQLHCYILKSGFLSNVFVSTALMGFYRKINS----LADAHKMFVEIPQPSVVSW----- 72
           C Q H   LKSG      VS AL+  Y +  S    L  A K+F +IP+    SW     
Sbjct: 168 CVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMT 227

Query: 73  ---------------------------NSLISGYVQSGKYRKALNLFVELERSEIYADAY 105
                                      N++ISGYV  G Y++AL +   +  S I  D +
Sbjct: 228 GYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEF 287

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
           ++ S + AC     LQLG  +H+ +++   +      N L+ +Y KCG   +A  +F +M
Sbjct: 288 TYPSVIRACANARLLQLGKQVHAYVLRRE-DFSFHFDNSLVTLYYKCGKFNEARAIFEKM 346

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILS 225
                                          P  D +S+N +++G    G I +A +I  
Sbjct: 347 -------------------------------PAKDLVSWNALLSGYVSSGHIGEAKLIFK 375

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
            M   N  SW  +++G        E L LF  M+ +     +Y FS  +   A L A   
Sbjct: 376 EMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCN 435

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G   H+ ++K G D+S+   +AL+ MY+KCG VE A  +FR++   + V+WNA+I    +
Sbjct: 436 GQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQ 495

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
           +G   + ++++E++   + ++PD +TFL VL ACSH  +  D+  +YF SM   Y I P 
Sbjct: 496 HGHGVEAVDVYEEMLK-KGIRPDRITFLTVLTACSHAGL-VDQGRKYFNSMETVYRIPPG 553

Query: 406 VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465
            +H   +I L+ + G+   A+ +I  L F     +W ALLS      ++++  I+A ++ 
Sbjct: 554 ADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLF 613

Query: 466 KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            L  + D  Y++L N+Y + G W+  + +R  MR+RG++KE  CSWIE+E 
Sbjct: 614 GLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMET 664



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 157/326 (48%), Gaps = 38/326 (11%)

Query: 42  TALMGFYRKINSLADAHKMFVEIP--QPSVVSWNSLISGYVQSGKYRKALNLFVELERSE 99
           T ++  Y     +A A  +F E P      V +N++I+G+  +     A+NLF +++   
Sbjct: 84  TTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEG 143

Query: 100 IYADAYSFTSALAACGQ-LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS---- 154
              D +++ S LA     +   +  +  H+  +K        ++N L+ +Y +C S    
Sbjct: 144 FKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSL 203

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQF 214
           +  A  VF ++ +KD  SW +++    +NG  +L                 E++ G+   
Sbjct: 204 LHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLG---------------KELLKGM--- 245

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
               D  M L +        +N++++GYVN     EAL +   M S  + +DE+T+ +++
Sbjct: 246 ----DENMKLVA--------YNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVI 293

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
              A    L  G  +H+ V+++  D S    ++L+ +Y KCG+   A ++F  +  K+LV
Sbjct: 294 RACANARLLQLGKQVHAYVLRRE-DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLV 352

Query: 335 TWNAMITGYARNGDLTKVIELFEQLK 360
           +WNA+++GY  +G + +   +F+++K
Sbjct: 353 SWNALLSGYVSSGHIGEAKLIFKEMK 378



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 112/242 (46%), Gaps = 40/242 (16%)

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           SLQL  A+H  I+ +  +    I N LID+Y K   ++ A  +F E              
Sbjct: 29  SLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDE-------------- 74

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSP--NSSSWN 236
                            +  PD I+   +++G    GDI  A  +    P    ++  +N
Sbjct: 75  -----------------ISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYN 117

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA-GLSALTWGMLIHSCVIK 295
           +++TG+ + N    A++LF +M+ +    D++T++++L+G+A  +      +  H+  +K
Sbjct: 118 AMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALK 177

Query: 296 QGLDASIVVASALLDMYSKCGQ----VEIADSMFRSLCRKNLVTWNAMITGYARNG--DL 349
            G      V++AL+ +YS+C      +  A  +F  +  K+  +W  M+TGY +NG  DL
Sbjct: 178 SGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDL 237

Query: 350 TK 351
            K
Sbjct: 238 GK 239



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 6/193 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYC--QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           P +Y     +++ + LG   YC  QQ H  ++K GF S++    AL+  Y K   + +A 
Sbjct: 415 PCDYAFSGAIKSCAVLG--AYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQ 472

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           ++F  +P    VSWN+LI+   Q G   +A++++ E+ +  I  D  +F + L AC   G
Sbjct: 473 QVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAG 532

Query: 119 SLQLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNSV 176
            +  G    +S    Y +  G      LID+  + G   +A  +   +  K     W ++
Sbjct: 533 LVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEAL 592

Query: 177 IAASARNGNLELA 189
           ++    +GN+EL 
Sbjct: 593 LSGCRVHGNMELG 605



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/124 (20%), Positives = 56/124 (45%), Gaps = 5/124 (4%)

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           ++L     +H  +I  G      + + L+D+Y K  +++ A  +F  +   + +    M+
Sbjct: 28  TSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMV 87

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           +GY  +GD+     +FE+         D+V +  ++   SH +  +  ++ + +   K  
Sbjct: 88  SGYCASGDIALARSVFEETPVS---MRDTVMYNAMITGFSHNNDGYSAINLFCK--MKHE 142

Query: 401 GIKP 404
           G KP
Sbjct: 143 GFKP 146


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 147/532 (27%), Positives = 263/532 (49%), Gaps = 42/532 (7%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H  ++K GF S V V   L+  Y       +A+ +F ++P   ++SWNSL++ +V  G+
Sbjct: 283 IHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGR 342

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
              AL L   +  S    +  +FTSALAAC      + G  +H  +V   L    +I N 
Sbjct: 343 SLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA 402

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR--------- 195
           L+ MYGK G + ++  V  +M  +D+++WN++I   A + + + A               
Sbjct: 403 LVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSN 462

Query: 196 ------------LP-------------------NPDTISYNEVINGIAQFGDIEDAIMIL 224
                       LP                     D    N +I   A+ GD+  +  + 
Sbjct: 463 YITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLF 522

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
           + + + N  +WN++L    +     E L L  +M+S  V +D+++FS  LS  A L+ L 
Sbjct: 523 NGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLE 582

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  +H   +K G +    + +A  DMYSKCG++     M      ++L +WN +I+   
Sbjct: 583 EGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALG 642

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           R+G   +V   F ++  +  ++P  VTF+++L ACSH  +  DK   Y++ + +D+G++P
Sbjct: 643 RHGYFEEVCATFHEMLEM-GIKPGHVTFVSLLTACSHGGL-VDKGLAYYDMIARDFGLEP 700

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
            +EHC  +I L+G+ G +  A+  I ++      +VWR+LL++     +LD  R +A  +
Sbjct: 701 AIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENL 760

Query: 465 IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            KLE + D VYV+  N++ + G W+    +R  M  + ++K+  CSW+++++
Sbjct: 761 SKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKD 812



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 201/395 (50%), Gaps = 40/395 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H ++ KSG LS+V+VSTA++  Y     ++ + K+F E+P  +VVSW SL+ GY   G
Sbjct: 80  QVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKG 139

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           +  + ++++  +    +  +  S +  +++CG L    LG  I  ++VK  LE  + + N
Sbjct: 140 EPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVEN 199

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF------LHRLP 197
            LI M G  G+V+ A  +F +M ++D ISWNS+ AA A+NG++E +F         H   
Sbjct: 200 SLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEV 259

Query: 198 NPDTISY---------------------------------NEVINGIAQFGDIEDAIMIL 224
           N  T+S                                  N ++   A  G   +A ++ 
Sbjct: 260 NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVF 319

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
             MP+ +  SWNS++  +VN  R  +AL L   M S    ++  TF++ L+         
Sbjct: 320 KQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFE 379

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G ++H  V+  GL  + ++ +AL+ MY K G++  +  +   + R+++V WNA+I GYA
Sbjct: 380 KGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYA 439

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            + D  K +  F+ ++ V  +  + +T ++VL+AC
Sbjct: 440 EDEDPDKALAAFQTMR-VEGVSSNYITVVSVLSAC 473



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 113/471 (23%), Positives = 216/471 (45%), Gaps = 46/471 (9%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           Y K   +  A  +F  +P  + VSWN+++SG V+ G Y + +  F ++    I   ++  
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVI 61

Query: 108 TSALAACGQLGSL-QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
            S + ACG+ GS+ + G+ +H  + K  L   V ++  ++ +YG  G V  +  VF EM 
Sbjct: 62  ASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMP 121

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLP------NPDTISY---------------- 204
           D++++SW S++   +  G  E        +       N +++S                 
Sbjct: 122 DRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQ 181

Query: 205 -----------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR 247
                            N +I+ +   G+++ A  I   M   ++ SWNSI   Y     
Sbjct: 182 IIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGH 241

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307
           + E+  +F  M+     ++  T ST+LS +  +    WG  IH  V+K G D+ + V + 
Sbjct: 242 IEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNT 301

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           LL MY+  G+   A+ +F+ +  K+L++WN+++  +  +G     + L   + +      
Sbjct: 302 LLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMIS-SGKSV 360

Query: 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQR 427
           + VTF + LAAC   D  F+K       +    G+        +++ + G+ GE+  ++R
Sbjct: 361 NYVTFTSALAACFTPDF-FEK-GRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRR 418

Query: 428 MIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG-DSDYVYVM 477
           ++ ++      V W AL+       D D A ++A + +++EG  S+Y+ V+
Sbjct: 419 VLLQMPRRDV-VAWNALIGGYAEDEDPDKA-LAAFQTMRVEGVSSNYITVV 467



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 187/398 (46%), Gaps = 41/398 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+   ++KSG  S + V  +L+     + ++  A+ +F ++ +   +SWNS+ + Y Q+
Sbjct: 180 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQN 239

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   ++  +F  + R     ++ + ++ L+  G +   + G  IH  +VK   +  V + 
Sbjct: 240 GHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVC 299

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF---------- 192
           N L+ MY   G   +A  VF +M  KD+ISWNS++A+   +G    A G           
Sbjct: 300 NTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKS 359

Query: 193 ------------------------LHRLPNPDTISYNEVINGI-----AQFGDIEDAIMI 223
                                   LH L     + YN++I         + G++ ++  +
Sbjct: 360 VNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRV 419

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG-IAGLSA 282
           L  MP  +  +WN+++ GY       +AL  F  M+ + V  +  T  ++LS  +     
Sbjct: 420 LLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDL 479

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G  +H+ ++  G ++   V ++L+ MY+KCG +  +  +F  L  +N++TWNAM+  
Sbjct: 480 LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAA 539

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            A +G   +V++L  ++++   +  D  +F   L+A +
Sbjct: 540 NAHHGHGEEVLKLVSKMRSF-GVSLDQFSFSEGLSAAA 576



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 98/227 (43%), Gaps = 5/227 (2%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV 69
           L A++ L      QQLH   +K GF  + F+  A    Y K   + +  KM       S+
Sbjct: 572 LSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSL 631

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
            SWN LIS   + G + +    F E+    I     +F S L AC   G +  G+A +  
Sbjct: 632 PSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDM 691

Query: 130 IVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLE 187
           I + + LE  +    C+ID+ G+ G + +A     +M +  + + W S++A+   +GNL+
Sbjct: 692 IARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLD 751

Query: 188 L---AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
               A   L +L   D   Y    N  A  G  ED   +   M   N
Sbjct: 752 RGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKN 798



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370
           MY+K G+V+ A  +F  +  +N V+WN M++G  R G   + +E F ++  +  ++P S 
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDL-GIKPSSF 59

Query: 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
              +++ AC  +   F +  +    + K  G+   V    +++ L G  G V  ++++  
Sbjct: 60  VIASLVTACGRSGSMFREGVQVHGFVAKS-GLLSDVYVSTAILHLYGVYGLVSCSRKVFE 118

Query: 431 EL 432
           E+
Sbjct: 119 EM 120


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 159/537 (29%), Positives = 264/537 (49%), Gaps = 47/537 (8%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QLH   +K G  S V V+  L+  Y K   L D  K+F  +P+  +V+WN +ISG VQ+G
Sbjct: 268 QLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNG 327

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
              +AL LF ++++S I  D+ +  S L A   L     G  +H  IV+  +   V + +
Sbjct: 328 FVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVS 387

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNP 199
            L+D+Y KC +V  A  V+      D++  +++I+    NG  + A      L      P
Sbjct: 388 ALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRP 447

Query: 200 DTISYNEVINGIAQFGD---------------------IEDAIM--------------IL 224
           + ++   V+   A                         +E A+M              I 
Sbjct: 448 NAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIF 507

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
           S + + +  +WNS+++ +       EAL+LF EM  + V     T S++LS  A L A+ 
Sbjct: 508 SKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIY 567

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
           +G  IH  VIK  + A +   SAL+DMY KCG +E A  +F S+  KN V+WN++I  Y 
Sbjct: 568 YGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYG 627

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE---YFESMTKDYG 401
             G + + + L   ++     + D VTFL +++AC+H      +V E    F  MT++Y 
Sbjct: 628 AYGLVKESVSLLRHMQE-EGFKADHVTFLALVSACAHAG----QVQEGLRLFRCMTEEYQ 682

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I P +EH   M+ L  + G++ +A  +I ++ F     +W ALL A     ++++A I++
Sbjct: 683 IAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIAS 742

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVA 518
            E+ KL+  +   YV++ N+    G WD  S +R  M++  ++K  G SW++V N +
Sbjct: 743 QELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNNTS 799



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 113/489 (23%), Positives = 233/489 (47%), Gaps = 43/489 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +   +++++ + LG     + +H      G   ++FV +AL+  Y     L DA ++
Sbjct: 144 PDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQV 203

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +   V WN ++ GYV++G    A+ LF ++  S    +  +    L+       L
Sbjct: 204 FDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDL 263

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G+ +H+  VKY LE  V +AN L+ MY KC  ++D   +FG M   D+++WN +I+  
Sbjct: 264 FFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGC 323

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEV------INGIAQFGDIEDAIM-------- 222
            +NG ++ A      +      PD+++   +      +NG  Q  ++   I+        
Sbjct: 324 VQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDV 383

Query: 223 ---------------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                                +  S  + +    +++++GYV      EA+ +F  +  +
Sbjct: 384 FLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQ 443

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  +    +++L   A ++A+  G  +HS  +K   +    V SAL+DMY+KCG+++++
Sbjct: 444 GIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLS 503

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  K+ VTWN+MI+ +A+NG+  + + LF ++  +  ++  +VT  +VL+AC+ 
Sbjct: 504 HYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREM-CMEGVKYSNVTISSVLSACA- 561

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +P     +    +     I+  +    ++I + G+ G +  A R+   +   +  V W
Sbjct: 562 -SLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKN-EVSW 619

Query: 442 RALLSASGA 450
            +++++ GA
Sbjct: 620 NSIIASYGA 628



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 185/402 (46%), Gaps = 46/402 (11%)

Query: 24  QLHCYILKSGF-LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV---VSWNSLISGY 79
           Q+H   + +G   ++  + T L+G Y       DA  +F  +P+ +    + WN LI G 
Sbjct: 60  QVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGL 119

Query: 80  VQSGKYRKALNLFVEL--ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER 137
             +G YR AL  ++++    S    D+++F   + +C  LG++ LG  +H       L+ 
Sbjct: 120 TMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDG 179

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNL----------- 186
            + + + LI MY   G + DA  VF  M ++D + WN ++    + G++           
Sbjct: 180 DMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMR 239

Query: 187 ----------------------ELAFGF-LHRLP-----NPDTISYNEVINGIAQFGDIE 218
                                 +L FG  LH L        +    N +++  A+   ++
Sbjct: 240 ASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLD 299

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
           D   +   MP  +  +WN +++G V    V +AL LF +MQ   +  D  T  ++L  + 
Sbjct: 300 DGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALT 359

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            L+    G  +H  +++  +   + + SAL+D+Y KC  V +A S++ S    ++V  + 
Sbjct: 360 DLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGST 419

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           MI+GY  NG   + +++F  L   + ++P++V   +VL AC+
Sbjct: 420 MISGYVLNGMSQEAVKMFRYLLE-QGIRPNAVAIASVLPACA 460



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 190/402 (47%), Gaps = 45/402 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  LL A +DL      ++LH YI+++    +VF+ +AL+  Y K  ++  A  +
Sbjct: 346 PDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSV 405

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           +       VV  +++ISGYV +G  ++A+ +F  L    I  +A +  S L AC  + ++
Sbjct: 406 YDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAM 465

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +HS  +K + E    + + L+DMY KCG ++ +  +F ++  KD ++WNS+I++ 
Sbjct: 466 KLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSF 525

Query: 181 ARNGNLELAFGFLHRL-------------------PNPDTISYNEVINGI---------- 211
           A+NG  E A      +                    +   I Y + I+G+          
Sbjct: 526 AQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADL 585

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                      + G++E A  +  SMP  N  SWNSI+  Y     V E++ L   MQ +
Sbjct: 586 FAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEE 645

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEI 320
               D  TF  ++S  A    +  G+ +  C+ ++  +   +   + ++D+YS+ G+++ 
Sbjct: 646 GFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDK 705

Query: 321 ADSMFRSLC-RKNLVTWNAMITG--YARNGDLTKVI--ELFE 357
           A  +   +  + +   W A++      RN +L ++   ELF+
Sbjct: 706 AMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFK 747



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 154/320 (48%), Gaps = 27/320 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  +L A + +      Q+LH Y LK+ +    +V +ALM  Y K   L  +H +
Sbjct: 447 PNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYI 506

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +I     V+WNS+IS + Q+G+  +ALNLF E+    +     + +S L+AC  L ++
Sbjct: 507 FSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAI 566

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH  ++K  +   +   + LIDMYGKCG++E A  VF  M +K+ +SWNS+IA+ 
Sbjct: 567 YYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASY 626

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
              G ++ +   L  +       D +++  +++  A  G +++ + +   M      +P 
Sbjct: 627 GAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPR 686

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  ++  Y    ++ +A+ L  +M  K                    A  WG L+H+
Sbjct: 687 MEHFACMVDLYSRAGKLDKAMELIVDMPFKP------------------DAGIWGALLHA 728

Query: 292 CVIKQGLDASIVVASALLDM 311
           C + + ++ + + +  L  +
Sbjct: 729 CRVHRNVELAEIASQELFKL 748


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 142/497 (28%), Positives = 255/497 (51%), Gaps = 41/497 (8%)

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F ++ +P++  WN++I G V    +  A++L+  +       + ++    L AC +   
Sbjct: 70  VFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLD 129

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           ++LG+ IHS +VK   +  V +   L+ +Y KC + +DA+ VF ++ DK+++SW ++I  
Sbjct: 130 VRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITG 189

Query: 180 SARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGD------------------- 216
              +G+   A G   +L      PD+ S  +V+   A+ GD                   
Sbjct: 190 YISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRN 249

Query: 217 ----------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                           +E A +I S+MP  +  SW++++ GY       +AL LF +MQS
Sbjct: 250 VFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQS 309

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           +++  D YT   +LS  A L AL  G+   S + +    ++ V+ +AL+DMYSKCG V  
Sbjct: 310 ENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQ 369

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F ++ +K+ V WNAM+ G + NG    V  LF  ++    ++PD  TF+ +L  C+
Sbjct: 370 AWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEK-HGIRPDENTFIGLLCGCT 428

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           H     ++  ++F +M + + + P++EH   M+ L+G+ G +  A ++I  +      VV
Sbjct: 429 HGGF-VNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVV 487

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W ALL       D  +A     ++I+LE  +   YV L N+Y+ +  W+ A  +R+ M+E
Sbjct: 488 WGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKE 547

Query: 501 RGLRKEAGCSWIEVENV 517
           + ++K   CSWIE++ +
Sbjct: 548 QQIQKIRACSWIEIDGI 564



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 186/409 (45%), Gaps = 46/409 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + +  +L+A +         ++H  ++K+G+  +VFV T+L+  Y K ++  DA K+
Sbjct: 112 PNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKV 171

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +IP  +VVSW ++I+GY+ SG +R+A+  F +L    +  D++S    LAAC +LG  
Sbjct: 172 FDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDC 231

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  I   I    + R V +A  L+DMY KCG++E A  +F  M +KDI+SW+++I   
Sbjct: 232 TSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGY 291

Query: 181 ARNG----NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIM-------------- 222
           A NG     L+L F        PD  +   V++  A  G ++  I               
Sbjct: 292 AFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNP 351

Query: 223 ---------------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                                I ++M   +   WN+++ G            LF  ++  
Sbjct: 352 VLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKH 411

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEI 320
            +  DE TF  +L G      +  G    + + +   L  SI     ++D+  + G +  
Sbjct: 412 GIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNE 471

Query: 321 ADSMFRSLCRK-NLVTWNAMITGYARNGDLTKVIELFEQ-LKTVRDLQP 367
           A  +  ++  K N V W A++ G      L K   L EQ LK + +L+P
Sbjct: 472 AHQLINNMPMKPNAVVWGALLGGCK----LHKDTHLAEQVLKKLIELEP 516



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 117/230 (50%), Gaps = 5/230 (2%)

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
           + D    N ++     FG    + ++ S +  PN   WN+++ G V+++   +A+HL+G 
Sbjct: 45  DQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGS 104

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M+      + +T   +L   A    +  G+ IHS ++K G D  + V ++LL +Y KC  
Sbjct: 105 MRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDN 164

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
            + A  +F  +  KN+V+W A+ITGY  +G   + I  F++L  +  L+PDS + + VLA
Sbjct: 165 FDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEM-GLKPDSFSLVKVLA 223

Query: 378 ACSHTDIPFDKVS-EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426
           AC+      D  S E+ +    D G+   V    S++ +  + G + RA 
Sbjct: 224 ACARLG---DCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERAN 270


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 165/603 (27%), Positives = 292/603 (48%), Gaps = 92/603 (15%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A  ++        +H  +  SGF  NVFV   L+  Y +  +  +A ++
Sbjct: 143 PDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQV 202

Query: 61  FVEIPQPSV---VSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYADAYSFTSALAACGQ 116
           F E+ +  V   VSWNS+++ Y+Q G   +A+ +F  + E   I  DA S  + L AC  
Sbjct: 203 FDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACAS 262

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE-------------------- 156
           +G+   G  +H   ++  L   V + N ++DMY KCG +E                    
Sbjct: 263 VGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAM 322

Query: 157 -----------DAIGVFG----EMIDKDIISWNSVIAASARNGNLELAFGFLHRL----P 197
                      DA+G+F     E I+ ++++W++VIA  A+ G    A     ++     
Sbjct: 323 VTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGS 382

Query: 198 NPDTISYNEVINGIAQFG----------------------DIEDAIMILSSM-------P 228
            P+ ++   +++G A  G                      D  D +M+++++        
Sbjct: 383 EPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCK 442

Query: 229 SPNSS---------------SWNSILTGYVNRNRVPEALHLFGEMQSKD--VPMDEYTFS 271
           SP ++               +W  ++ G        EAL LF +M   D  V  + +T S
Sbjct: 443 SPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTIS 502

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIV-VASALLDMYSKCGQVEIADSMFRSLCR 330
             L   A L AL +G  IH+ V++   +++++ VA+ L+DMYSK G V+ A  +F ++ +
Sbjct: 503 CALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQ 562

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
           +N V+W +++TGY  +G   + +++F +++ V  L PD VTF+ VL ACSH+ +  D+  
Sbjct: 563 RNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVX-LVPDGVTFVVVLYACSHSGM-VDQGI 620

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450
            YF  M KD+G+ P  EH   M+ L+ + G +  A  +IR +       VW ALLSA   
Sbjct: 621 NYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRV 680

Query: 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCS 510
            +++++   +A ++++LE  +D  Y +L N+Y +   W   + +R  M+  G++K  GCS
Sbjct: 681 YANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCS 740

Query: 511 WIE 513
           W++
Sbjct: 741 WVQ 743



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 131/505 (25%), Positives = 216/505 (42%), Gaps = 106/505 (20%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPS---VVSWNSLISGYVQSGKYRKALNLFVELERS 98
           T ++  Y   NS A A  +   +  PS   V  WN LI   V  G     L L+  ++R 
Sbjct: 81  THIISMYLTFNSPAKALSVLRRL-HPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRL 139

Query: 99  EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
               D Y+F   L ACG++ S + G ++H+ +     E  V + N L+ MYG+CG+ E+A
Sbjct: 140 GWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENA 199

Query: 159 IGVFGEMIDK---DIISWNSVIAASARNGNLELAFGFLHRLP-----NPDTISY------ 204
             VF EM ++   D++SWNS++AA  + G+   A     R+       PD +S       
Sbjct: 200 RQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPA 259

Query: 205 -----------------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSW 235
                                        N V++  A+ G +E+A  +   M   +  SW
Sbjct: 260 CASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSW 319

Query: 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS------------------------ 271
           N+++TGY    R  +AL LF +++ + + ++  T+S                        
Sbjct: 320 NAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLL 379

Query: 272 -----------TMLSGIAGLSALTWGMLIHSCVIKQGLDA-------SIVVASALLDMYS 313
                      ++LSG A    L  G   H   IK  L+         ++V +AL+DMYS
Sbjct: 380 CGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYS 439

Query: 314 KCGQVEIADSMFRSLCRKN--LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371
           KC   + A +MF  +  K+  +VTW  +I G A++G+  + +ELF Q+     LQPD+  
Sbjct: 440 KCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQM-----LQPDNFV 494

Query: 372 FLN------VLAACSHTD-IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424
             N       L AC+    + F +    +    +       V +C  +I +  + G+V  
Sbjct: 495 MPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANC--LIDMYSKSGDV-D 551

Query: 425 AQRMIRELGFGSYGVVWRALLSASG 449
           A R++ +      GV W +L++  G
Sbjct: 552 AARVVFDNMHQRNGVSWTSLMTGYG 576


>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
 gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
          Length = 547

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 141/488 (28%), Positives = 246/488 (50%), Gaps = 41/488 (8%)

Query: 39  FVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS 98
           +V+T ++         A A ++F  +P P++   N++I  Y Q+  +R A+ ++V + R 
Sbjct: 43  YVATQIVHVCNGHGRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRC 102

Query: 99  EI---------YADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
                        D +++   L ACG L + QLG  +H+ + +   E   ++ N LI+MY
Sbjct: 103 LPDPSSSGGFSVGDRFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMY 162

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVIN 209
            +CG                               +L LA      +   D +S+N +I+
Sbjct: 163 TRCG-------------------------------DLSLARKVFDGMREKDAVSWNTLIS 191

Query: 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
             A+ G +  A  +  SMP     SW ++++GY        A+ +F +MQ +    D+ +
Sbjct: 192 AHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVS 251

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
              +L   A L AL  G  I++   K G+   I + +AL++MY+KCG +E A  +F  + 
Sbjct: 252 IVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMS 311

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389
            K++++W+  I G A +G   + ++LFE +     + P+ +TF+ +L+ACSH  +  D+ 
Sbjct: 312 EKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGL-LDEG 370

Query: 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
             YF+ M ++YG++P+VEH   ++ L+G+ G + RA   I  +     G +W +LLSA  
Sbjct: 371 LRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALDTIGGMPIPPDGKIWGSLLSACR 430

Query: 450 ACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGC 509
           + SD+D A ++A  +++LE +     VML N+Y + G W   +  R  +R R  RK  GC
Sbjct: 431 SHSDVDTAVVAAERLVELEPEDVGNLVMLANVYAAAGRWGNVASTRKEIRSRSTRKTPGC 490

Query: 510 SWIEVENV 517
           S IEV+NV
Sbjct: 491 SMIEVDNV 498



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 153/344 (44%), Gaps = 59/344 (17%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFY---------RKI-------- 51
           LL+A   L      +Q+H ++ +SG  S+  V  +L+  Y         RK+        
Sbjct: 123 LLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVFDGMREKD 182

Query: 52  ----NSLADAH----------KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER 97
               N+L  AH          ++F  +P  +VVSW +L+SGY   G +  A+ +F +++ 
Sbjct: 183 AVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQM 242

Query: 98  SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED 157
                D  S  + L AC QLG+L+LG  I++   K+ +   + I N L++MY KCG +E+
Sbjct: 243 EGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEE 302

Query: 158 AIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-----PDTISYNEVINGIA 212
           A+ +F  M +KD+ISW++ I   A +G    A      +       P+ I++  +++  +
Sbjct: 303 ALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGLLSACS 362

Query: 213 QFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
             G +++ +     M       P+   +  ++       R+  AL   G M    +P D 
Sbjct: 363 HAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALDTIGGMP---IPPD- 418

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
                            WG L+ +C     +D ++V A  L+++
Sbjct: 419 --------------GKIWGSLLSACRSHSDVDTAVVAAERLVEL 448



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 100/199 (50%), Gaps = 3/199 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  +  +L A + LG     + ++ Y  K G L  +++  ALM  Y K   + +A ++
Sbjct: 247 PDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQL 306

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER-SEIYADAYSFTSALAACGQLGS 119
           F  + +  V+SW++ I G    G+ R+A+ LF  ++R   +  +  +F   L+AC   G 
Sbjct: 307 FHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGL 366

Query: 120 LQLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
           L  G+    ++  +Y +E  V    C++D+ G+ G ++ A+   G M I  D   W S++
Sbjct: 367 LDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALDTIGGMPIPPDGKIWGSLL 426

Query: 178 AASARNGNLELAFGFLHRL 196
           +A   + +++ A     RL
Sbjct: 427 SACRSHSDVDTAVVAAERL 445


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 158/518 (30%), Positives = 276/518 (53%), Gaps = 14/518 (2%)

Query: 7   FHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ 66
           F L  ++  L  D + QQ+HC  +K GF S++ ++ +L+  Y K  ++  A  +FV +P+
Sbjct: 227 FGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPE 286

Query: 67  PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI 126
            SVVSWN +I+GY Q  +  KA+     ++      D  ++ + L AC + G ++ G  +
Sbjct: 287 VSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQM 346

Query: 127 HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA--SARNG 184
              +   SL       N ++  Y +  + ++A+ +F EM  + +    + +A   S+  G
Sbjct: 347 FDGMSSPSLSSW----NTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAG 402

Query: 185 NLELAFGF-LHRLPNP-----DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
            + L  G  +H +        D    + +I   ++ G +E A  I   +   +   WNS+
Sbjct: 403 MMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSM 462

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           + G    +   EA   F +M+ K +   +++++T+LS  A LS+L+ G  +HS + ++G 
Sbjct: 463 MAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGY 522

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
                V SAL+DMYSKCG V+ A  +F  +  KN VTWN MI GYA+NG   + + L+E 
Sbjct: 523 MNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYED 582

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           +    + +PD +TF+ VL ACSH+ +  D   + F SM +++G++P V+H   +I  +G+
Sbjct: 583 MIGSGE-KPDGITFVAVLTACSHSGL-VDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGR 640

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G +  A+ +I ++      ++W  LLS+    +D+ +AR +A E+  L+  +   YV+L
Sbjct: 641 AGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLL 700

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            N+Y+S G WD A  +R  M    + K+ G SWIE +N
Sbjct: 701 ANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIEHKN 738



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 141/522 (27%), Positives = 243/522 (46%), Gaps = 58/522 (11%)

Query: 19  DTYC-QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLIS 77
           D  C ++ H   +K G  +N++V  AL+G Y K   + DA + F ++P+P+ VS+ +++ 
Sbjct: 123 DVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMG 182

Query: 78  GYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM------------- 124
           G   S +  +A  LF  + R+ I+ D+ S +S L  C + G  + G+             
Sbjct: 183 GLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHG 242

Query: 125 -AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
             +H   +K+  E  + + N L+DMY K G+++ A  +F  M +  ++SWN +IA   + 
Sbjct: 243 QQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQK 302

Query: 184 GNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
                A  +L R+      PD I+Y  ++    + GDIE    +   M SP+ SSWN+IL
Sbjct: 303 SQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNTIL 362

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           +GY       EA+ LF EMQ + V  D  T + +LS +AG+  L  G  +H+   K    
Sbjct: 363 SGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFR 422

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
             I +AS L+ MYSKCG+VE+A  +F  +   ++V WN+M+ G + N    +    F+++
Sbjct: 423 TDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKM 482

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           +  + + P   ++  VL+                               CC+ +  + Q 
Sbjct: 483 RE-KGMFPSQFSYATVLS-------------------------------CCAKLSSLSQG 510

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
            +V      I   G+ +   V  AL+     C D+D AR     ++   G +   +  + 
Sbjct: 511 RQV---HSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMML---GKNTVTWNEMI 564

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAHS 521
           + Y  +G  D A ++   M   G  K  G +++ V    +HS
Sbjct: 565 HGYAQNGCGDEAVLLYEDMIGSG-EKPDGITFVAVLTACSHS 605



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 177/386 (45%), Gaps = 64/386 (16%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
             S L  C    +   G  IH+ +++  L     ++N LI+ Y KC +++ +  +F +M 
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFG------DIE-- 218
            +DI +WN+++ A  +   LE A      +P  + +S+N +I+ + + G      D+E  
Sbjct: 68  KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVECG 127

Query: 219 ---------------------------------DAIMILSSMPSPNSSSWNSILTGYVNR 245
                                            DAI     +P PN  S+ +++ G  + 
Sbjct: 128 RRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADS 187

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLS----GIAG----------LSALTWGMLIHS 291
           ++V EA  LF  M    + +D  + S++L     G  G          LS+   G  +H 
Sbjct: 188 DQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHC 247

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
             IK G ++ + + ++LLDMY+K G ++ A+ +F ++   ++V+WN MI GY +    +K
Sbjct: 248 LTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSK 307

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHT-DIPFDKVSEYFESMTKDYGIKPTVEHCC 410
            IE  ++++     +PD +T++N+L AC  + DI   +  + F+ M+      P++    
Sbjct: 308 AIEYLQRMQ-YHGFEPDEITYVNMLVACIKSGDIEAGR--QMFDGMS-----SPSLSSWN 359

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGS 436
           +++    Q      A ++ RE+ F S
Sbjct: 360 TILSGYSQNENHKEAVKLFREMQFRS 385



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 176/410 (42%), Gaps = 93/410 (22%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H ++L+S    + F+S  L+ FY K N++  + ++F ++P+  + +WN+++  Y ++ +
Sbjct: 27  IHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKASE 86

Query: 85  YRKALNLFVELERSEIYADAYSFTSAL---AACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
              A  LF E+    I +   +  SAL    ACG L  ++ G   H   +K  L+  + +
Sbjct: 87  LEDAHVLFAEMPERNIVS-WNTLISALTRNGACGALVDVECGRRCHGISIKIGLDNNIYV 145

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEM-----------------------------------I 166
            N L+ MY KC  + DAI  FG++                                   I
Sbjct: 146 GNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRI 205

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPD---------TISY---------NEVI 208
             D +S +SV+   +R G  E      + + + D         TI +         N ++
Sbjct: 206 HVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLL 265

Query: 209 NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268
           +  A+ G+++ A MI  +MP  +  SWN ++ GY  +++  +A+     MQ      DE 
Sbjct: 266 DMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEI 325

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           T+  ML                +C+                    K G +E    MF  +
Sbjct: 326 TYVNMLV---------------ACI--------------------KSGDIEAGRQMFDGM 350

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
              +L +WN +++GY++N +  + ++LF +++  R + PD  T   +L++
Sbjct: 351 SSPSLSSWNTILSGYSQNENHKEAVKLFREMQ-FRSVHPDRTTLAIILSS 399



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 97/191 (50%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    +L   + L   +  +Q+H  I + G++++ FV +AL+  Y K   +  A  +
Sbjct: 489 PSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWV 548

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   + V+WN +I GY Q+G   +A+ L+ ++  S    D  +F + L AC   G +
Sbjct: 549 FDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLV 608

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIA 178
             G+ I + + + + +E  V    C+ID  G+ G + +A  +  +M  K D I W  +++
Sbjct: 609 DTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLS 668

Query: 179 ASARNGNLELA 189
           +     ++ LA
Sbjct: 669 SCRVYADVSLA 679


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 148/507 (29%), Positives = 275/507 (54%), Gaps = 14/507 (2%)

Query: 19  DTYCQ------QLHCYILKSGFLSN-VFVSTALMGFYRKI-NSLADAHKMFVEIPQPSVV 70
           D YC+      Q+H + +KSG  ++  F+   ++     I ++L  A ++ +  P+P   
Sbjct: 179 DQYCKNLRALTQIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAF 238

Query: 71  SWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGSLQLGMAIHSK 129
            +N+L+ GY +S +   ++ +FVE+ R   I+ D++SF   + A     SL+ G  +H +
Sbjct: 239 MFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQ 298

Query: 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
            +K+ L+  + +A  LI MYG+CG V  A  VF EM   ++++WN+V+ A  R  ++  A
Sbjct: 299 ALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGA 358

Query: 190 FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
                ++   +  S+N ++ G  + G++E A  I S MP  +  SW++++ G+ +     
Sbjct: 359 REIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFN 418

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
           E+   F E+   ++  +E + + +LS  +   A  +G  +H  V K G    + V +AL+
Sbjct: 419 ESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALI 478

Query: 310 DMYSKCGQVEIADSMFRSLCRK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           DMYS+CG V +A  +F  +  K ++V+W +MI G A +G   + I +F ++ T   + PD
Sbjct: 479 DMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEM-TESGVMPD 537

Query: 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM 428
            ++F+++L ACSH  +   +   YF  M + Y I+P VEH   M+ L G+ G++ +A   
Sbjct: 538 EISFISLLYACSHAGL-IKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSF 596

Query: 429 IRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW 488
           I ++      +VWR LL A  +  ++++A      + +L+ ++    V+L N+Y + G W
Sbjct: 597 ICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKW 656

Query: 489 -DVASVMRNFMRERGLRKEAGCSWIEV 514
            DVAS+ ++ + +R ++K    S +EV
Sbjct: 657 KDVASIRKSMIVQR-IKKITAWSLVEV 682



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  L  +L A S  G   + + LH ++ KSG+   V V+ AL+  Y +  ++  A  +
Sbjct: 434 PNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLV 493

Query: 61  FVEIPQP-SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F  + +  S+VSW S+I+G    G   +A+ +F E+  S +  D  SF S L AC   G 
Sbjct: 494 FEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGL 553

Query: 120 LQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
           ++ G    SK+ + Y +E  V    C++D+YG+ G ++ A     +M I    I W +++
Sbjct: 554 IKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLL 613

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVI---NGIAQFGDIEDAIMILSSM 227
            A + +GN+ELA     RL   D  +  +++   N  A  G  +D   I  SM
Sbjct: 614 GACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRKSM 666


>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
 gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
          Length = 528

 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 159/516 (30%), Positives = 257/516 (49%), Gaps = 37/516 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNV-FVSTALMGFYRKINSLADAHKM 60
           N  V  HLL     L      Q++H   +  G   +   VS  +   Y     +ADA K+
Sbjct: 13  NRSVCHHLLAQCKKL---RELQRIHALAIAHGLHPHQQSVSCKIFRCYADFGRVADARKL 69

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EIP P ++S+ SL+S ++Q    R+A++LF  +  +    D ++   AL+A    G  
Sbjct: 70  FDEIPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAVVGALSASSGAGDQ 129

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +G A+H  I +  L+  VV+ N LIDMY +CG                           
Sbjct: 130 VVGRAVHGLIFRLGLDGEVVVGNALIDMYSQCG--------------------------- 162

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                 E A     R+   D +++  +++G  +   ++ A+     +P  +  +W +++T
Sbjct: 163 ----KFESAVKVFDRMSLKDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALIT 218

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           G+V   +   AL LFG M  +       T   +LS  A + AL  G +IH    K     
Sbjct: 219 GHVQGRQPVRALELFGRMVLEGHRPTHVTIVGVLSACADIGALDLGRVIHGYGSKCNASL 278

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           +I+V++AL+DMY+K G +E+A S+F+ +  K+  TW  MI+     GD  K +ELF+ + 
Sbjct: 279 NIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKALELFQDML 338

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
               + P+SVTF++VL+ACSH+ +  + + E F+ M + Y I P +EH   MI L+G+ G
Sbjct: 339 RA-GVVPNSVTFVSVLSACSHSGLIEEGI-ELFDRMRQLYKIDPLLEHYGCMIDLLGRGG 396

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
            +  A+ +I ++      V+WR+LLSA     +  +A I+  E++K E   D VYV+L N
Sbjct: 397 LLEEAEALIADMNVEPDIVIWRSLLSACLVRGNNRLAEIAGKEIVKREPGDDGVYVLLWN 456

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +Y S   W  A  MR  M    + K+ GCSWIE++ 
Sbjct: 457 MYASSNKWREAREMRQQMLSLKIFKKPGCSWIEIDG 492



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 110/262 (41%), Gaps = 35/262 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + +   L ASS  G     + +H  I + G    V V  AL+  Y +      A K+
Sbjct: 111 PDGFAVVGALSASSGAGDQVVGRAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKV 170

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA------------------ 102
           F  +     V+W S++ GY++      AL+ F ++    + A                  
Sbjct: 171 FDRMSLKDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRAL 230

Query: 103 -------------DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
                           +    L+AC  +G+L LG  IH    K +    ++++N L+DMY
Sbjct: 231 ELFGRMVLEGHRPTHVTIVGVLSACADIGALDLGRVIHGYGSKCNASLNIIVSNALMDMY 290

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPNPDTISYN 205
            K G +E A  VF E+  KD  +W ++I+     G+    LEL    L     P+++++ 
Sbjct: 291 AKSGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKALELFQDMLRAGVVPNSVTFV 350

Query: 206 EVINGIAQFGDIEDAIMILSSM 227
            V++  +  G IE+ I +   M
Sbjct: 351 SVLSACSHSGLIEEGIELFDRM 372



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 99/191 (51%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    +  +L A +D+G     + +H Y  K     N+ VS ALM  Y K   +  A  +
Sbjct: 243 PTHVTIVGVLSACADIGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKSGHIEMAFSV 302

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+      +W ++IS     G  +KAL LF ++ R+ +  ++ +F S L+AC   G +
Sbjct: 303 FQEVQSKDSFTWTTMISCCTVQGDGKKALELFQDMLRAGVVPNSVTFVSVLSACSHSGLI 362

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G+ +  ++ + Y ++  +    C+ID+ G+ G +E+A  +  +M ++ DI+ W S+++
Sbjct: 363 EEGIELFDRMRQLYKIDPLLEHYGCMIDLLGRGGLLEEAEALIADMNVEPDIVIWRSLLS 422

Query: 179 ASARNGNLELA 189
           A    GN  LA
Sbjct: 423 ACLVRGNNRLA 433


>gi|356551361|ref|XP_003544044.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 688

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 144/475 (30%), Positives = 247/475 (52%), Gaps = 34/475 (7%)

Query: 43  ALMGFYRKINSLADAHKMFVEIPQPSV----VSWNSLISGYVQSGKYRKALNLFVELERS 98
           A++  Y +  +L  A ++F  + Q  V    +SWNS+ISGYV    + +A +LF +L + 
Sbjct: 204 AMIAGYWENGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDLLKE 263

Query: 99  EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
            I  D+++  S LA C  + S++ G   HS  +   L+   ++   L++MY KC  +  A
Sbjct: 264 GIEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAA 323

Query: 159 IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIE 218
              F  + ++D+ +WN++I+  AR    E     LH+    D                  
Sbjct: 324 QMAFDGVSERDLPTWNALISGYARCNQAE-KIRELHQKMRRDGFE--------------- 367

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
                      PN  +WN I+ GYV   +   A+ LF EMQ  ++  D YT   +L+  +
Sbjct: 368 -----------PNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACS 416

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            L+ +  G  +H+  I+ G D+ + + +AL+DMY+KCG V+    ++  +   NLV+ NA
Sbjct: 417 RLATIQRGKQVHAYSIRAGHDSDVHIGAALVDMYAKCGDVKHCYRVYNMISNPNLVSHNA 476

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           M+T YA +G   + I LF ++   + ++PD VTFL VL++C H      ++     ++  
Sbjct: 477 MLTAYAMHGHGEEGIALFRRMLASK-VRPDHVTFLAVLSSCVHAGSL--EIGHECLALMV 533

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
            Y + P+++H   M+ L+ + G+++ A  +I+ L   +  V W ALL      +++D+  
Sbjct: 534 AYNVMPSLKHYTCMVDLLSRAGQLYEAYELIKNLPTEADAVTWNALLGGCFIHNEVDLGE 593

Query: 459 ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
           I+A ++I+LE ++   YVML NLY S G W   +  R  M++ G++K  GCSWIE
Sbjct: 594 IAAEKLIELEPNNPGNYVMLANLYASAGKWHYLTQTRQLMKDMGMQKRPGCSWIE 648



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 180/359 (50%), Gaps = 50/359 (13%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH + +KSGF ++ FV+T L+  Y +  S  +A  +F  +P  ++ SW +L+  Y++ 
Sbjct: 68  KQLHAHSIKSGFNAHEFVTTKLLQMYARNCSFENACHVFDTMPLRNLHSWTALLRVYIEM 127

Query: 83  GKYRKALNLFVEL--ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           G + +A  LF +L  E   +  D + F   L  C  L +++LG  +H   +K+       
Sbjct: 128 GFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCGLCAVELGRQMHGMALKHD------ 181

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
                       G ++ A  +F     K   S+N++IA    NGNL  A           
Sbjct: 182 ------------GDMKSAFEMFSRFSRKSAASYNAMIAGYWENGNLFKA----------- 218

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                E+ + + Q G  +D I            SWNS+++GYV+ +   EA  LF ++  
Sbjct: 219 ----KELFDRMEQEGVQKDRI------------SWNSMISGYVDGSLFDEAYSLFRDLLK 262

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           + +  D +T  ++L+G A ++++  G   HS  I +GL ++ +V  AL++MYSKC  +  
Sbjct: 263 EGIEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVA 322

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAA 378
           A   F  +  ++L TWNA+I+GYAR     K+ EL ++++  RD  +P+  T+  ++A 
Sbjct: 323 AQMAFDGVSERDLPTWNALISGYARCNQAEKIRELHQKMR--RDGFEPNVYTWNGIIAG 379



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 148/354 (41%), Gaps = 61/354 (17%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + L  +L   +D+      ++ H   +  G  SN  V  AL+  Y K   +  A   
Sbjct: 267 PDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQMA 326

Query: 61  FVEIPQPSVVSWNSLIS-----------------------------------GYVQSGKY 85
           F  + +  + +WN+LIS                                   GYV++ +Y
Sbjct: 327 FDGVSERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWNGIIAGYVENKQY 386

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
             A+ LF E++ + +  D Y+    LAAC +L ++Q G  +H+  ++   +  V I   L
Sbjct: 387 DSAMQLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQVHAYSIRAGHDSDVHIGAAL 446

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDT 201
           +DMY KCG V+    V+  + + +++S N+++ A A +G+ E       R+      PD 
Sbjct: 447 VDMYAKCGDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIALFRRMLASKVRPDH 506

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPS----PNSSSWNSILTGYVNRNRVPEALHLFGE 257
           +++  V++     G +E     L+ M +    P+   +  ++       ++ EA  L   
Sbjct: 507 VTFLAVLSSCVHAGSLEIGHECLALMVAYNVMPSLKHYTCMVDLLSRAGQLYEAYELI-- 564

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
              K++P +               A+TW  L+  C I   +D   + A  L+++
Sbjct: 565 ---KNLPTEA-------------DAVTWNALLGGCFIHNEVDLGEIAAEKLIEL 602



 Score = 42.0 bits (97), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
           L S P    SS N      +  N  P    L+ E      P    T++++L       + 
Sbjct: 14  LLSHPPRTRSSSNRASLSLLPSNLNPHLTLLYHE------PPSSTTYASILDSCG---SP 64

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H+  IK G +A   V + LL MY++    E A  +F ++  +NL +W A++  Y
Sbjct: 65  ILGKQLHAHSIKSGFNAHEFVTTKLLQMYARNCSFENACHVFDTMPLRNLHSWTALLRVY 124

Query: 344 ARNGDLTKVIELFEQL--KTVRDLQPDSVTFLNVLAAC 379
              G   +   LFEQL  + VR ++ D   F  VL  C
Sbjct: 125 IEMGFFEEAFFLFEQLLYEGVR-VRLDFFVFPVVLKIC 161


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 159/537 (29%), Positives = 264/537 (49%), Gaps = 47/537 (8%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QLH   +K G  S V V+  L+  Y K   L D  K+F  +P+  +V+WN +ISG VQ+G
Sbjct: 268 QLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNG 327

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
              +AL LF ++++S I  D+ +  S L A   L     G  +H  IV+  +   V + +
Sbjct: 328 FVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVS 387

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNP 199
            L+D+Y KC +V  A  V+      D++  +++I+    NG  + A      L      P
Sbjct: 388 ALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRP 447

Query: 200 DTISYNEVINGIAQFGD---------------------IEDAIM--------------IL 224
           + ++   V+   A                         +E A+M              I 
Sbjct: 448 NAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIF 507

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
           S + + +  +WNS+++ +       EAL+LF EM  + V     T S++LS  A L A+ 
Sbjct: 508 SKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIY 567

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
           +G  IH  VIK  + A +   SAL+DMY KCG +E A  +F S+  KN V+WN++I  Y 
Sbjct: 568 YGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYG 627

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE---YFESMTKDYG 401
             G + + + L   ++     + D VTFL +++AC+H      +V E    F  MT++Y 
Sbjct: 628 AYGLVKESVSLLRHMQE-EGFKADHVTFLALVSACAHAG----QVQEGLRLFRCMTEEYQ 682

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I P +EH   M+ L  + G++ +A  +I ++ F     +W ALL A     ++++A I++
Sbjct: 683 IAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIAS 742

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVA 518
            E+ KL+  +   YV++ N+    G WD  S +R  M++  ++K  G SW++V N +
Sbjct: 743 QELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNNTS 799



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 113/489 (23%), Positives = 233/489 (47%), Gaps = 43/489 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +   +++++ + LG     + +H      G   ++FV +AL+  Y     L DA ++
Sbjct: 144 PDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQV 203

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +   V WN ++ GYV++G    A+ LF ++  S    +  +    L+       L
Sbjct: 204 FDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDL 263

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G+ +H+  VKY LE  V +AN L+ MY KC  ++D   +FG M   D+++WN +I+  
Sbjct: 264 FFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGC 323

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEV------INGIAQFGDIEDAIM-------- 222
            +NG ++ A      +      PD+++   +      +NG  Q  ++   I+        
Sbjct: 324 VQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDV 383

Query: 223 ---------------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                                +  S  + +    +++++GYV      EA+ +F  +  +
Sbjct: 384 FLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQ 443

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  +    +++L   A ++A+  G  +HS  +K   +    V SAL+DMY+KCG+++++
Sbjct: 444 GIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLS 503

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  K+ VTWN+MI+ +A+NG+  + + LF ++  +  ++  +VT  +VL+AC+ 
Sbjct: 504 HYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREM-CMEGVKYSNVTISSVLSACA- 561

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +P     +    +     I+  +    ++I + G+ G +  A R+   +   +  V W
Sbjct: 562 -SLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNE-VSW 619

Query: 442 RALLSASGA 450
            +++++ GA
Sbjct: 620 NSIIASYGA 628



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 185/402 (46%), Gaps = 46/402 (11%)

Query: 24  QLHCYILKSGF-LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV---VSWNSLISGY 79
           Q+H   + +G   ++  + T L+G Y       DA  +F  +P+ +    + WN LI G 
Sbjct: 60  QVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGL 119

Query: 80  VQSGKYRKALNLFVEL--ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER 137
             +G YR AL  ++++    S    D+++F   + +C  LG++ LG  +H       L+ 
Sbjct: 120 TMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDG 179

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNL----------- 186
            + + + LI MY   G + DA  VF  M ++D + WN ++    + G++           
Sbjct: 180 DMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMR 239

Query: 187 ----------------------ELAFGF-LHRLP-----NPDTISYNEVINGIAQFGDIE 218
                                 +L FG  LH L        +    N +++  A+   ++
Sbjct: 240 ASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLD 299

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
           D   +   MP  +  +WN +++G V    V +AL LF +MQ   +  D  T  ++L  + 
Sbjct: 300 DGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALT 359

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            L+    G  +H  +++  +   + + SAL+D+Y KC  V +A S++ S    ++V  + 
Sbjct: 360 DLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGST 419

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           MI+GY  NG   + +++F  L   + ++P++V   +VL AC+
Sbjct: 420 MISGYVLNGMSQEAVKMFRYLLE-QGIRPNAVAIASVLPACA 460



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 190/402 (47%), Gaps = 45/402 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  LL A +DL      ++LH YI+++    +VF+ +AL+  Y K  ++  A  +
Sbjct: 346 PDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSV 405

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           +       VV  +++ISGYV +G  ++A+ +F  L    I  +A +  S L AC  + ++
Sbjct: 406 YDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAM 465

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +HS  +K + E    + + L+DMY KCG ++ +  +F ++  KD ++WNS+I++ 
Sbjct: 466 KLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSF 525

Query: 181 ARNGNLELAFGFLHRL-------------------PNPDTISYNEVINGI---------- 211
           A+NG  E A      +                    +   I Y + I+G+          
Sbjct: 526 AQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADL 585

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                      + G++E A  +  SMP  N  SWNSI+  Y     V E++ L   MQ +
Sbjct: 586 FAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEE 645

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEI 320
               D  TF  ++S  A    +  G+ +  C+ ++  +   +   + ++D+YS+ G+++ 
Sbjct: 646 GFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDK 705

Query: 321 ADSMFRSLCRK-NLVTWNAMITG--YARNGDLTKVI--ELFE 357
           A  +   +  K +   W A++      RN +L ++   ELF+
Sbjct: 706 AMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFK 747



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 154/320 (48%), Gaps = 27/320 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  +L A + +      Q+LH Y LK+ +    +V +ALM  Y K   L  +H +
Sbjct: 447 PNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYI 506

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +I     V+WNS+IS + Q+G+  +ALNLF E+    +     + +S L+AC  L ++
Sbjct: 507 FSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAI 566

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH  ++K  +   +   + LIDMYGKCG++E A  VF  M +K+ +SWNS+IA+ 
Sbjct: 567 YYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASY 626

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
              G ++ +   L  +       D +++  +++  A  G +++ + +   M      +P 
Sbjct: 627 GAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPR 686

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  ++  Y    ++ +A+ L  +M  K                    A  WG L+H+
Sbjct: 687 MEHFACMVDLYSRAGKLDKAMELIVDMPFKP------------------DAGIWGALLHA 728

Query: 292 CVIKQGLDASIVVASALLDM 311
           C + + ++ + + +  L  +
Sbjct: 729 CRVHRNVELAEIASQELFKL 748


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 139/463 (30%), Positives = 248/463 (53%), Gaps = 43/463 (9%)

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCG 153
           ++R  +  D   ++  L  C +LG ++ G  +H+ +V  + L+  +V+ N +++MY KCG
Sbjct: 78  IQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCG 137

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE---LAFGFLHRL---PNPDTISY--- 204
            ++DA  +F EM  KD+++W ++IA  ++N       L F  + RL   PN  T+S    
Sbjct: 138 CLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLK 197

Query: 205 ------------------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSS 234
                                         + +++  A+ G ++ A +    MP+ +  S
Sbjct: 198 ASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVS 257

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
           WN++++G+  +     ALHL  +MQ K+     +T+S++LS  A + AL  G  +H+ +I
Sbjct: 258 WNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMI 317

Query: 295 KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
           K GL     + + LLDMY+K G ++ A  +F  L + ++V+WN M+TG A++G   + ++
Sbjct: 318 KSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLD 377

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
            FEQ+  +  ++P+ ++FL VL ACSH+ +  D+   YFE M K Y ++P V H  + + 
Sbjct: 378 RFEQMLRI-GIEPNEISFLCVLTACSHSGL-LDEGLYYFELMKK-YKVEPDVPHYVTFVD 434

Query: 415 LMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474
           L+G+ G + RA+R IRE+       VW ALL A     ++++   +A    +L+      
Sbjct: 435 LLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGP 494

Query: 475 YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
            ++L N+Y S G W   + +R  M+E G++K+  CSW+E+EN 
Sbjct: 495 RMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENA 537



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 159/329 (48%), Gaps = 46/329 (13%)

Query: 1   PNEYVLFHLLRAS-SDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           PN + L  LL+AS S+ G D    QLH + LK G+ S+V+V +AL+  Y +   +  A  
Sbjct: 187 PNHFTLSSLLKASGSEHGLDP-GTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQL 245

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
            F  +P  S VSWN+LISG+ + G+   AL+L  +++R       ++++S L+AC  +G+
Sbjct: 246 AFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGA 305

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+ G  +H+ ++K  L+    I N L+DMY K GS++DA  VF  ++  D++SWN+++  
Sbjct: 306 LEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTG 365

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
            A++G      G              E ++   Q         +L     PN  S+  +L
Sbjct: 366 CAQHG-----LG-------------KETLDRFEQ---------MLRIGIEPNEISFLCVL 398

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM--LSGIAGL---------------SA 282
           T   +   + E L+ F  M+   V  D   + T   L G  GL               +A
Sbjct: 399 TACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTA 458

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDM 311
             WG L+ +C + + ++  +  A    ++
Sbjct: 459 AVWGALLGACRMHKNMELGVYAAERAFEL 487


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 160/547 (29%), Positives = 269/547 (49%), Gaps = 44/547 (8%)

Query: 8   HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFY---RKINSL--ADAHKMFV 62
           HL      L    + Q+LH  +L+ G   +   ++ L+  Y   R++ +     +     
Sbjct: 106 HLASLPHGLPRLRHVQELHAQVLRQGLHRDPRAASKLIASYALLRRVPACRCVFSAAAAP 165

Query: 63  EIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF-TSALAACGQLGSLQ 121
                + +  N+L+  Y  +     AL +FV++   +     YSF   ALA  G    + 
Sbjct: 166 PFAPSTALLANTLLRAYALNSLPHAALAVFVDMPLRQRDTFTYSFLIKALATAG----VT 221

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
              A H+ + K        + N LID Y K   + DA  VF EM  +D++SWN+ +AA  
Sbjct: 222 PVRAAHTHVFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMV 281

Query: 182 RNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTG 241
           R G ++ A      +P  DT+S+N +++G A+ G+ E+A  +   MP  N  SW+++++ 
Sbjct: 282 RKGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSA 341

Query: 242 YVNR----------NRVP---------------------EALHLFGEMQSKDVPMDEYTF 270
           Y  +          +++P                     EA  LF EM+   + +D    
Sbjct: 342 YCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAV 401

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS-LC 329
            ++L+  A    L  G  IH  V ++ L  S +V +AL+DM+ KCG V  AD +F + + 
Sbjct: 402 VSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIV 461

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389
            K+ V+WN +I G+A +G   K + LF Q+K  +   PD+VT +NVL+AC+H  +  ++ 
Sbjct: 462 EKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQ-QGFHPDAVTLINVLSACTHMGL-VEEG 519

Query: 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
             +F +M  DYGIKP +EH   M+ L+G+ G +  A  MI+ + +    V+W +LLSA  
Sbjct: 520 RRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSACR 579

Query: 450 ACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGC 509
              +++ A ++A E+  L+  +   Y +L N+Y   G W   +  R  M+  G +K AG 
Sbjct: 580 LHKNVEYAELAANELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGS 639

Query: 510 SWIEVEN 516
           SWIE++ 
Sbjct: 640 SWIELDE 646


>gi|357117671|ref|XP_003560587.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Brachypodium distachyon]
          Length = 602

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 168/547 (30%), Positives = 277/547 (50%), Gaps = 51/547 (9%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFY-RKINSLADAHKMFVEIPQPSVVSWNSLISGY 79
           YC  LH    ++G L++ +V+ AL+ FY R    L  A + F ++P   VV+ +S+++ +
Sbjct: 55  YC--LHARAARAGLLADRYVANALLAFYVRLPRHLPYALRAFDDLPHRDVVAHSSILAAF 112

Query: 80  VQSGKYRKALNLFVELERSE--IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER 137
           +++G  R+AL     +      ++ +A++ ++A+ AC  L    +G  +H  I+      
Sbjct: 113 LRAGLPRRALQSLRSMLAGADGVFPNAHALSAAVKACAVLRDRNVGACVHGVILVRGYAD 172

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN-------------- 183
             ++ + L+DMYG   S  DA   F EM   D I + S+I+A  RN              
Sbjct: 173 DDIVLSALVDMYGHTASPGDARKAFEEMCTPDGICYTSLISAFVRNDWFEEAVRWFRTMV 232

Query: 184 ------------GNLELAFGFLHRLPNPDTISYNEVINGI--------------AQFGDI 217
                       G++  A G L R           V  G+              A+ G +
Sbjct: 233 TRNGVEPDGCTFGSMMTALGNLRRARQGSEAHAQVVTRGLCGSVIVESSTLDMYAKCGMM 292

Query: 218 EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277
            +A  +   M   N+ SW+++L GY       + L LF +M  +    D Y+  T+L   
Sbjct: 293 LEARRVFDEMQVRNAVSWSALLGGYCQNAEYEKVLVLFRQMDKEYD--DSYSLGTVLRAC 350

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
           AGLS++  G  IH   ++ G    +VV SAL+D+Y+KCG V+ A  +F +   +N +TWN
Sbjct: 351 AGLSSVKPGKEIHCRFLRNGGWRDVVVESALVDLYAKCGAVDYACRVFEASSVRNTITWN 410

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           AMI G+A+NG   + I LF Q+  VR+  +PD ++F+ VL ACSH  +  ++   YF SM
Sbjct: 411 AMIGGFAQNGHAERAINLFNQM--VREGARPDYISFIGVLFACSHNGM-VEQGRNYFNSM 467

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
           +KDYGI P +EH   ++ L+ +   +  A+ +I +  F +   +W A+L AS   S+ DV
Sbjct: 468 SKDYGIAPGIEHYNCIVDLLSRVELLEEAEDLINKSPFSNDSSLWAAILGASATQSNPDV 527

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           A   A ++++LE      Y++L N+Y + G W+ AS +R  M+ R ++K+ G SWI+V  
Sbjct: 528 AERVAKKMMELEPQYHLSYILLENVYRTVGRWEDASEIRRLMKSRKVKKDPGMSWIDVNR 587

Query: 517 VAAHSSN 523
              H  N
Sbjct: 588 NKIHMCN 594



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/409 (21%), Positives = 174/409 (42%), Gaps = 47/409 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + L   ++A + L        +H  IL  G+  +  V +AL+  Y    S  DA K 
Sbjct: 137 PNAHALSAAVKACAVLRDRNVGACVHGVILVRGYADDDIVLSALVDMYGHTASPGDARKA 196

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYADAYSFTSALAACGQLGS 119
           F E+  P  + + SLIS +V++  + +A+  F  +  R+ +  D  +F S + A G L  
Sbjct: 197 FEEMCTPDGICYTSLISAFVRNDWFEEAVRWFRTMVTRNGVEPDGCTFGSMMTALGNLRR 256

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            + G   H+++V   L   V++ +  +DMY KCG + +A  VF EM  ++ +SW++++  
Sbjct: 257 ARQGSEAHAQVVTRGLCGSVIVESSTLDMYAKCGMMLEARRVFDEMQVRNAVSWSALLGG 316

Query: 180 SARNGNLELAFGFLHRLPNP-------------------------------------DTI 202
             +N   E       ++                                        D +
Sbjct: 317 YCQNAEYEKVLVLFRQMDKEYDDSYSLGTVLRACAGLSSVKPGKEIHCRFLRNGGWRDVV 376

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             + +++  A+ G ++ A  +  +    N+ +WN+++ G+        A++LF +M  + 
Sbjct: 377 VESALVDLYAKCGAVDYACRVFEASSVRNTITWNAMIGGFAQNGHAERAINLFNQMVREG 436

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIA 321
              D  +F  +L   +    +  G    + + K  G+   I   + ++D+ S+   +E A
Sbjct: 437 ARPDYISFIGVLFACSHNGMVEQGRNYFNSMSKDYGIAPGIEHYNCIVDLLSRVELLEEA 496

Query: 322 DSMF-RSLCRKNLVTWNAMITGYA--RNGDLTKVIELFEQLKTVRDLQP 367
           + +  +S    +   W A++   A   N D+ + +      K + +L+P
Sbjct: 497 EDLINKSPFSNDSSLWAAILGASATQSNPDVAERVA-----KKMMELEP 540



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 128/270 (47%), Gaps = 17/270 (6%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + Y L  +LRA + L      +++HC  L++G   +V V +AL+  Y K  ++  A ++F
Sbjct: 339 DSYSLGTVLRACAGLSSVKPGKEIHCRFLRNGGWRDVVVESALVDLYAKCGAVDYACRVF 398

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
                 + ++WN++I G+ Q+G   +A+NLF ++ R     D  SF   L AC   G ++
Sbjct: 399 EASSVRNTITWNAMIGGFAQNGHAERAINLFNQMVREGARPDYISFIGVLFACSHNGMVE 458

Query: 122 LGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-----WNS 175
            G    + + K Y +  G+   NC++D+  +   +E+A     ++I+K   S     W +
Sbjct: 459 QGRNYFNSMSKDYGIAPGIEHYNCIVDLLSRVELLEEA----EDLINKSPFSNDSSLWAA 514

Query: 176 VIAASARNGNLELAFGFLHRLPNPDT---ISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           ++ ASA   N ++A     ++   +    +SY  + N     G  EDA  I   M S   
Sbjct: 515 ILGASATQSNPDVAERVAKKMMELEPQYHLSYILLENVYRTVGRWEDASEIRRLMKSRKV 574

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                +    VNRN++    H+  +M + D
Sbjct: 575 KKDPGMSWIDVNRNKI----HMCNDMDTYD 600


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  248 bits (633), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 143/510 (28%), Positives = 260/510 (50%), Gaps = 40/510 (7%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGF---YRKINSLAD-AHKMFVEIP 65
           L   SDL   T+ + +H Y++++  + +VF ++ L+ F        SL D A ++F +I 
Sbjct: 24  LETCSDL---THLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQ 80

Query: 66  QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA 125
            P++  +N++I G+  S    +A + +V+ +R  +  D  +F   + +C +L  + +G  
Sbjct: 81  NPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQ 140

Query: 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN 185
            H  I+K+  E+ V + N L+ MY   G  E A  +F  M   D++SW S          
Sbjct: 141 AHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTS---------- 190

Query: 186 LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245
                                +I G  + GD+E A  +   MP  N  +W+++++GY   
Sbjct: 191 ---------------------MIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQN 229

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
           N   +A+ LF  +QS+ V  +E    +++S  A L AL  G   H  V+K G+  ++++ 
Sbjct: 230 NHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILG 289

Query: 306 SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           +AL+DMY++CG ++ A  +F  L  ++ ++W A+I G A +G   + ++ F  +     L
Sbjct: 290 TALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEA-GL 348

Query: 366 QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425
            P  +TF  VL+ACSH  +  ++  + FESM +D+ ++P +EH   M+ L+G+ G++  A
Sbjct: 349 TPRDITFTAVLSACSHGGL-VERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEA 407

Query: 426 QRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485
           +R + ++       VW ALL A     + ++       +I+L       YV+L N+Y + 
Sbjct: 408 ERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANA 467

Query: 486 GNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
             W+  + MR  M+ +GL+K  G S IE++
Sbjct: 468 KEWEKVTEMRQMMKAKGLKKPPGHSLIELD 497



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 97/190 (51%), Gaps = 2/190 (1%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE V+  ++ + + LG     ++ H Y++K+G   N+ + TAL+  Y +  S+  A  +F
Sbjct: 250 NETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVF 309

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            ++P+   +SW +LI+G    G   ++L  F  +  + +     +FT+ L+AC   G ++
Sbjct: 310 EDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVE 369

Query: 122 LGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
            G  I   + + + +E  +    C++D+ G+ G +E+A     +M +  +   W +++ A
Sbjct: 370 RGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGA 429

Query: 180 SARNGNLELA 189
              + N E+ 
Sbjct: 430 CRIHKNAEIG 439


>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
          Length = 602

 Score =  248 bits (633), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 154/514 (29%), Positives = 260/514 (50%), Gaps = 33/514 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +   +LL+A          +++H  ++++GF  + FVS AL+GFY     +    ++
Sbjct: 89  PNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQV 148

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+ QP +V W  +I  YV      KAL LF  +    +  D  + ++ ++ACG LG L
Sbjct: 149 FDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDL 208

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +  A+H  I K  +E    +++ LI  YG+CGS                          
Sbjct: 209 GVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGS-------------------------- 242

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                L+ A+ F    P  + + +N +I+   +  ++E    +  SMP  +  SWNS++ 
Sbjct: 243 -----LDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIG 297

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           G+    +  EAL  F EM+   V  +  T  + LS  A   AL  G  IH+ V K  ++ 
Sbjct: 298 GFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNR 357

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
              + S+L+DMYSKCG ++ A  +F    R++L TW +++ G A +G   K +  F ++K
Sbjct: 358 DGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMK 417

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
             + +QPD VT + VL+AC+H  +  D+   YF+SM K +G+ P VEH   M+ L+G+ G
Sbjct: 418 EAQ-VQPDDVTMVGVLSACAHAGL-LDQGWWYFQSMEKVFGLVPKVEHYGXMVDLLGRMG 475

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
            +  A  +I  +   +  ++W A LSA    +++++  ++A  ++ L     +  VML N
Sbjct: 476 CLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLXPRDPWARVMLSN 535

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           +Y     WD +  +R  ++++GL+K  GCS IEV
Sbjct: 536 MYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEV 569


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  248 bits (633), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 161/533 (30%), Positives = 269/533 (50%), Gaps = 47/533 (8%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           LH   + +G+ ++ FV++AL   Y  ++ +  A K+F  +P P  V WN+L++G   S  
Sbjct: 136 LHALAVAAGYAADTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGS-- 193

Query: 85  YRKALNLFVELE-RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
             +A+  F  +     +  DA +  S L A  ++  + +G  +HS   K  L     +  
Sbjct: 194 --EAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLT 251

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG------NLELAFGFLHRLP 197
            LI +Y KCG VE A  +F  M   D++++N++I+  + NG      NL      L   P
Sbjct: 252 GLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWP 311

Query: 198 NPDTIS-------------YNEVINGIA--------------------QFGDIEDAIMIL 224
           N  T+                + ++G                      +  D+E A    
Sbjct: 312 NSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAF 371

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
            +MP     SWN++++GY        A+ LF +M   +V  +  T S+ LS  A L AL+
Sbjct: 372 DTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALS 431

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  +H  + ++ L+ ++ V +AL+DMY+KCG +  A  +F ++  KN+V+WNAMI GY 
Sbjct: 432 LGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYG 491

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
            +G   + ++L++ +     L P S TFL+VL ACSH  +  ++  + F SMT DY I P
Sbjct: 492 LHGQGAEALKLYKDMLDAH-LLPTSATFLSVLYACSHGGL-VEEGWKVFRSMTDDYAINP 549

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV-VWRALLSASGACSDLDVARISAAE 463
            +EHC  M+ L+G+ G++  A  +I E    + G  VW ALL A     D D+A++++ +
Sbjct: 550 GIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQK 609

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           + +L+ ++   YV+L NL+TS   +  A+V+R   + R L K  G + IE+ N
Sbjct: 610 LFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGN 662



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 163/315 (51%), Gaps = 16/315 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  L+   S  G D   Q LH ++LKSGF +N  VSTA+   + ++N +  A K 
Sbjct: 311 PNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKA 370

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+ ++ SWN++ISGY Q+G    A+ LF ++ +  +  +  + +S L+AC QLG+L
Sbjct: 371 FDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGAL 430

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  +H  I +  LE  V +   LIDMY KCGS+ +A  +F  M +K+++SWN++IA  
Sbjct: 431 SLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGY 490

Query: 181 ARNGN----LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
             +G     L+L    L     P + ++  V+   +  G +E+   +  SM     +   
Sbjct: 491 GLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSM-----TDDY 545

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           +I  G  +   + + L   G+++     + E+  S +  G+       WG L+ +C++ +
Sbjct: 546 AINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGV-------WGALLGACMVHK 598

Query: 297 GLDASIVVASALLDM 311
             D + + +  L ++
Sbjct: 599 DSDLAKLASQKLFEL 613



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 175/404 (43%), Gaps = 48/404 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L A++++   T  + +H +  K G   +  V T L+  Y K   +  A  +
Sbjct: 210 PDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCL 269

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +P +V++N+LISGY  +G    ++NLF EL    ++ ++ +  + +      G  
Sbjct: 270 FDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHD 329

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            L   +H  ++K        ++  +  ++ +   +E A   F  M +K + SWN++I+  
Sbjct: 330 LLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGY 389

Query: 181 ARNGNLELAFGFLHRL------PNPDTIS------------------------------- 203
           A+NG  E+A     ++      PNP TIS                               
Sbjct: 390 AQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNV 449

Query: 204 --YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                +I+  A+ G I +A  I ++M + N  SWN+++ GY    +  EAL L+ +M   
Sbjct: 450 YVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDA 509

Query: 262 DVPMDEYTFSTMLSGIA--GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            +     TF ++L   +  GL    W +   S      ++  I   + ++D+  + GQ++
Sbjct: 510 HLLPTSATFLSVLYACSHGGLVEEGWKVF-RSMTDDYAINPGIEHCTCMVDLLGRAGQLK 568

Query: 320 IADSMFRSLCRKNL--VTWNAMITG--YARNGDLTKVI--ELFE 357
            A  +     +  +    W A++      ++ DL K+   +LFE
Sbjct: 569 EAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFE 612


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  248 bits (633), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 146/476 (30%), Positives = 254/476 (53%), Gaps = 38/476 (7%)

Query: 43  ALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA 102
           AL+  Y +   + +A ++F ++P  + +SW  +I+GY Q+G+  +AL L  EL RS +  
Sbjct: 358 ALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLP 417

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
              S TS   AC  + +L+ G  +HS  VK   +      N LI MYGKC ++E A  VF
Sbjct: 418 SLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVF 477

Query: 163 GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIM 222
             M+ K                               D +S+N  +  + Q   +++A  
Sbjct: 478 SRMVTK-------------------------------DIVSWNSFLAALVQNDLLDEARN 506

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
              +M S +  SW +I++ Y +  +  EA+  F  M  +    +    + +L     L A
Sbjct: 507 TFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGA 566

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS--MFRSLCRKNLVTWNAMI 340
              G  IH+  IK G+D+ ++VA+AL+ MY KCG    ADS  +F  +  +++ TWN +I
Sbjct: 567 SKIGQQIHTVAIKLGMDSELIVANALISMYFKCG---CADSRRIFDLMEERDIFTWNTII 623

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           TGYA++G   + I++++ +++   L P+ VTF+ +L ACSH  +  D+  ++F+SM++DY
Sbjct: 624 TGYAQHGLGREAIKMYQHMESAGVL-PNEVTFVGLLNACSHAGL-VDEGWKFFKSMSQDY 681

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
           G+ P  EH   M+ L+G+ G+V  A++ I ++      V+W ALL A     + ++ + +
Sbjct: 682 GLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRA 741

Query: 461 AAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           A ++ ++E  +   YVML N+Y+S G W   + +R  M+++G+ KE GCSW ++++
Sbjct: 742 AEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKD 797



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 212/441 (48%), Gaps = 42/441 (9%)

Query: 54  LADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
           + DA  +F ++P+ ++VSW  +ISGY +   + KA ++F ++ R  +  D  +F SAL+A
Sbjct: 174 MVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSA 233

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED-AIGVFGEMIDKDIIS 172
              LG+L +  ++    +K   ER VVI   ++++Y +  SV D AI  F  MI+++  +
Sbjct: 234 VKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYT 293

Query: 173 WNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           W+++IAA +  G ++ A     R P         +I G+AQ G I+DA ++   +P P  
Sbjct: 294 WSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIV 353

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVP---------------------MDEYTFS 271
            SWN+++TGY+    V EA  LF +M  ++                       + E   S
Sbjct: 354 VSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRS 413

Query: 272 TMLSGIAGLS----------ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            ML  ++ L+          AL  G  +HS  +K G   +    +AL+ MY KC  +E A
Sbjct: 414 GMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYA 473

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  K++V+WN+ +    +N  L +    F+ +     L  D V++  +++A +H
Sbjct: 474 RQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM-----LSRDDVSWTTIISAYAH 528

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR---ELGFGSYG 438
            +   + +   F++M  ++ + P       ++ + G  G     Q++     +LG  S  
Sbjct: 529 AEQSNEAMGA-FKTMFCEHEL-PNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSEL 586

Query: 439 VVWRALLSASGACSDLDVARI 459
           +V  AL+S    C   D  RI
Sbjct: 587 IVANALISMYFKCGCADSRRI 607



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 162/346 (46%), Gaps = 45/346 (13%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           ++  + +A ++F  +P+  +++WNS+IS Y  +G    A +L+          DA S   
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY----------DAISG-- 93

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
                   G+++ G                     L+  YG+ G V +A  VF  M++++
Sbjct: 94  --------GNMRTGA-------------------ILLSGYGRLGRVLEARRVFDGMLERN 126

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
            ++WN++I+   +NG++ +A      +P+ D  S+N ++ G      + DA  +   MP 
Sbjct: 127 TVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPE 186

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            N  SW  +++GY       +A  +F +M  + +  D+  F++ LS + GL  L     +
Sbjct: 187 RNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESL 246

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQV-EIADSMFRSLCRKNLVTWNAMITGYARNGD 348
               +K G +  +V+ +A+L++YS+   V + A   F S+  +N  TW+ MI   +  G 
Sbjct: 247 RVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGR 306

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD---IPFDKVSE 391
           +   I ++E+   V+ +   +   +  LA C   D   I F+++ E
Sbjct: 307 IDAAIAVYER-DPVKSIACRT-ALITGLAQCGRIDDARILFEQIPE 350



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 36/239 (15%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H   +K G   N F   AL+  Y K  ++  A ++F  +    +VSWNS ++  VQ+ 
Sbjct: 440 QVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQND 499

Query: 84  KYRKALNLFVE-LERSEI--------YADAYSFTSALAA--------------------- 113
              +A N F   L R ++        YA A     A+ A                     
Sbjct: 500 LLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLG 559

Query: 114 -CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS 172
            CG LG+ ++G  IH+  +K  ++  +++AN LI MY KCG   D+  +F  M ++DI +
Sbjct: 560 VCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCA-DSRRIFDLMEERDIFT 618

Query: 173 WNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSM 227
           WN++I   A++G    A      + +    P+ +++  ++N  +  G +++      SM
Sbjct: 619 WNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSM 677



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 94/191 (49%), Gaps = 3/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN  +L  LL     LG     QQ+H   +K G  S + V+ AL+  Y K    AD+ ++
Sbjct: 549 PNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGC-ADSRRI 607

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  + +WN++I+GY Q G  R+A+ ++  +E + +  +  +F   L AC   G +
Sbjct: 608 FDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLV 667

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G      + + Y L        C++D+ G+ G V+ A     +M I+ D + W++++ 
Sbjct: 668 DEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLG 727

Query: 179 ASARNGNLELA 189
           A   + N E+ 
Sbjct: 728 ACKIHKNAEIG 738



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 77/153 (50%), Gaps = 10/153 (6%)

Query: 208 INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
           I  + + G + +A  +  +MP  +  +WNS+++ Y +      A  L+  +   ++    
Sbjct: 41  IRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNM---- 96

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFR 326
            T + +LSG   L     G ++ +  +  G L+ + V  +A++  Y + G + +A  +F 
Sbjct: 97  RTGAILLSGYGRL-----GRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFD 151

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           ++  +++ +WN+M+TGY  +  +     LFE++
Sbjct: 152 AMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKM 184


>gi|125553513|gb|EAY99222.1| hypothetical protein OsI_21180 [Oryza sativa Indica Group]
          Length = 818

 Score =  248 bits (633), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 146/473 (30%), Positives = 247/473 (52%), Gaps = 10/473 (2%)

Query: 52  NSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSAL 111
           ++L  A +M    P+P+V +WN+++SG  + G+ R+AL +   + +  +  DA + +S L
Sbjct: 222 DALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLL 281

Query: 112 AACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII 171
            +    G L+ GM IH   ++  LE  V     L+DMY KCG ++ A  VF  +  +++ 
Sbjct: 282 KSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNLT 341

Query: 172 SWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           +WNS++A  A  G  ++A   +  +     +PD  ++N +I G +  G    A+++L  +
Sbjct: 342 TWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQI 401

Query: 228 P----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
                +PN  SW S+++G  +     ++ +   EMQ   V     T S +L   AGL+  
Sbjct: 402 KAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQ 461

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H   +++  D  +VV++AL+DMYSK G +  A  +F S+ +KNLV  NAM+TG 
Sbjct: 462 KKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGL 521

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A +G   + IELF  +     L+PDS+TF  +L AC    +   +  EYF+ M   YG+K
Sbjct: 522 AVHGQGREAIELFHDMWN-SGLKPDSITFTALLTACRSMGL-VTEGWEYFDGMETKYGVK 579

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           PT E+   M+ L+ + G +  A   I           W ALL+      +L +A ++A  
Sbjct: 580 PTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARN 639

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           + +LE  +   Y+++ NLY     +D A  ++  M+ RG+    G SWI++E 
Sbjct: 640 LFRLEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQ 692



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 182/428 (42%), Gaps = 59/428 (13%)

Query: 5   VLFHLLRASSDL-GWDT-------YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLAD 56
           VL  LLR  +DL G DT          QLH   +++G   +  V+ AL+    ++     
Sbjct: 46  VLVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALVDLLARLGRGPS 105

Query: 57  AHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
             ++  E  +      V WN  ++   ++ ++ +A+ +F E++   +             
Sbjct: 106 CARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGV------------- 152

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISW 173
                  + G A+H+  +K +L+   ++   L  MY +   V  A  V   M    ++ W
Sbjct: 153 -----PRRRGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPW 207

Query: 174 NSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS 233
           N+V+A  AR G ++ A     R+                             S P PN +
Sbjct: 208 NAVVACCARLGLVDDALELAARMSR---------------------------SGPEPNVA 240

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           +WN++L+G     R  EAL +   M  + +  D  T S++L  +A    L  GM IH   
Sbjct: 241 TWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFF 300

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
           ++  L+  +   +AL+DMY+KCG+++ A  +F +L  +NL TWN+++ GYA  G     +
Sbjct: 301 LRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNLTTWNSLVAGYANAGRFDIAL 360

Query: 354 ELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMI 413
           EL E +K  R L PD  T+  ++   S        V        K  G+ P V    S+I
Sbjct: 361 ELVELMKKNR-LDPDITTWNGLITGYSMNGQSSQAV--LLLRQIKAAGVTPNVVSWTSLI 417

Query: 414 RLMGQKGE 421
                 GE
Sbjct: 418 SGSCHNGE 425



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 164/359 (45%), Gaps = 10/359 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL++ ++ G   +  ++HC+ L++    +V+  TAL+  Y K   L  A K+
Sbjct: 272 PDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKV 331

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   ++ +WNSL++GY  +G++  AL L   ++++ +  D  ++   +      G  
Sbjct: 332 FDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQS 391

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM----IDKDIISWNSV 176
              + +  +I    +   VV    LI      G  ED+     EM    +   +++ + +
Sbjct: 392 SQAVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVL 451

Query: 177 IAASA----RNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           + A A    +    EL    L R  + D +    +I+  ++ G +  A +I  S+   N 
Sbjct: 452 LRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNL 511

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG-MLIHS 291
              N++LTG     +  EA+ LF +M +  +  D  TF+ +L+    +  +T G      
Sbjct: 512 VLCNAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDG 571

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQV-EIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
              K G+  +    + ++D+ ++CG + E  D + RS        W A++TG + +G+L
Sbjct: 572 METKYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNL 630



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LLRA + L      ++LHC+ L+  +  ++ VSTAL+  Y K  SL  A  +
Sbjct: 443 PSLVTMSVLLRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVI 502

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I Q ++V  N++++G    G+ R+A+ LF ++  S +  D+ +FT+ L AC  +G +
Sbjct: 503 FESIQQKNLVLCNAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLV 562

Query: 121 QLGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G      +  KY ++       C++D+  +CG +++A+       ID     W +++ 
Sbjct: 563 TEGWEYFDGMETKYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLT 622

Query: 179 ASARNGNLELA 189
             + +GNL LA
Sbjct: 623 GCSIHGNLALA 633


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  248 bits (632), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 165/603 (27%), Positives = 292/603 (48%), Gaps = 92/603 (15%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A  ++        +H  +  SGF  NVFV   L+  Y +  +  +A ++
Sbjct: 124 PDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQV 183

Query: 61  FVEIPQPSV---VSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYADAYSFTSALAACGQ 116
           F E+ +  V   VSWNS+++ Y+Q G   +A+ +F  + E   I  DA S  + L AC  
Sbjct: 184 FDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACAS 243

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE-------------------- 156
           +G+   G  +H   ++  L   V + N ++DMY KCG +E                    
Sbjct: 244 VGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAM 303

Query: 157 -----------DAIGVFG----EMIDKDIISWNSVIAASARNGNLELAFGFLHRL----P 197
                      DA+G+F     E I+ ++++W++VIA  A+ G    A     ++     
Sbjct: 304 VTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGS 363

Query: 198 NPDTISYNEVINGIAQFG----------------------DIEDAIMILSSM-------P 228
            P+ ++   +++G A  G                      D  D +M+++++        
Sbjct: 364 EPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCK 423

Query: 229 SPNSS---------------SWNSILTGYVNRNRVPEALHLFGEMQSKD--VPMDEYTFS 271
           SP ++               +W  ++ G        EAL LF +M   D  V  + +T S
Sbjct: 424 SPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTIS 483

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIV-VASALLDMYSKCGQVEIADSMFRSLCR 330
             L   A L AL +G  IH+ V++   +++++ VA+ L+DMYSK G V+ A  +F ++ +
Sbjct: 484 CALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQ 543

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
           +N V+W +++TGY  +G   + +++F +++ V  L PD VTF+ VL ACSH+ +  D+  
Sbjct: 544 RNGVSWTSLMTGYGMHGRGEEALQIFYEMQKV-GLVPDGVTFVVVLYACSHSGM-VDQGI 601

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450
            YF  M KD+G+ P  EH   M+ L+ + G +  A  +IR +       VW ALLSA   
Sbjct: 602 NYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRV 661

Query: 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCS 510
            +++++   +A ++++LE  +D  Y +L N+Y +   W   + +R  M+  G++K  GCS
Sbjct: 662 YANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCS 721

Query: 511 WIE 513
           W++
Sbjct: 722 WVQ 724



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 131/505 (25%), Positives = 216/505 (42%), Gaps = 106/505 (20%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPS---VVSWNSLISGYVQSGKYRKALNLFVELERS 98
           T ++  Y   NS A A  +   +  PS   V  WN LI   V  G     L L+  ++R 
Sbjct: 62  THIISMYLTFNSPAKALSVLRRL-HPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRL 120

Query: 99  EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
               D Y+F   L ACG++ S + G ++H+ +     E  V + N L+ MYG+CG+ E+A
Sbjct: 121 GWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENA 180

Query: 159 IGVFGEMIDK---DIISWNSVIAASARNGNLELAFGFLHRLP-----NPDTISY------ 204
             VF EM ++   D++SWNS++AA  + G+   A     R+       PD +S       
Sbjct: 181 RQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPA 240

Query: 205 -----------------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSW 235
                                        N V++  A+ G +E+A  +   M   +  SW
Sbjct: 241 CASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSW 300

Query: 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS------------------------ 271
           N+++TGY    R  +AL LF +++ + + ++  T+S                        
Sbjct: 301 NAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRL 360

Query: 272 -----------TMLSGIAGLSALTWGMLIHSCVIKQGLDA-------SIVVASALLDMYS 313
                      ++LSG A    L  G   H   IK  L+         ++V +AL+DMYS
Sbjct: 361 CGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYS 420

Query: 314 KCGQVEIADSMFRSLCRKN--LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371
           KC   + A +MF  +  K+  +VTW  +I G A++G+  + +ELF Q+     LQPD+  
Sbjct: 421 KCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQM-----LQPDNFV 475

Query: 372 FLN------VLAACSHTD-IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424
             N       L AC+    + F +    +    +       V +C  +I +  + G+V  
Sbjct: 476 MPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANC--LIDMYSKSGDV-D 532

Query: 425 AQRMIRELGFGSYGVVWRALLSASG 449
           A R++ +      GV W +L++  G
Sbjct: 533 AARVVFDNMHQRNGVSWTSLMTGYG 557


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  248 bits (632), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 146/476 (30%), Positives = 254/476 (53%), Gaps = 38/476 (7%)

Query: 43  ALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA 102
           AL+  Y +   + +A ++F ++P  + +SW  +I+GY Q+G+  +AL L  EL RS +  
Sbjct: 358 ALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLP 417

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
              S TS   AC  + +L+ G  +HS  VK   +      N LI MYGKC ++E A  VF
Sbjct: 418 SLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVF 477

Query: 163 GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIM 222
             M+ K                               D +S+N  +  + Q   +++A  
Sbjct: 478 SRMVTK-------------------------------DIVSWNSFLAALVQNDLLDEARN 506

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
              +M S +  SW +I++ Y +  +  EA+  F  M  +    +    + +L     L A
Sbjct: 507 TFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGA 566

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS--MFRSLCRKNLVTWNAMI 340
              G  IH+  IK G+D+ ++VA+AL+ MY KCG    ADS  +F  +  +++ TWN +I
Sbjct: 567 SKIGQQIHTVAIKLGMDSELIVANALISMYFKCG---CADSRRIFDLMEERDIFTWNTII 623

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           TGYA++G   + I++++ +++   L P+ VTF+ +L ACSH  +  D+  ++F+SM++DY
Sbjct: 624 TGYAQHGLGREAIKMYQHMESAGVL-PNEVTFVGLLNACSHAGL-VDEGWKFFKSMSQDY 681

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
           G+ P  EH   M+ L+G+ G+V  A++ I ++      V+W ALL A     + ++ + +
Sbjct: 682 GLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRA 741

Query: 461 AAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           A ++ ++E  +   YVML N+Y+S G W   + +R  M+++G+ KE GCSW ++++
Sbjct: 742 AEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKD 797



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 212/441 (48%), Gaps = 42/441 (9%)

Query: 54  LADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
           + DA  +F ++P+ ++VSW  +ISGY +   + KA ++F ++ R  +  D  +F SAL+A
Sbjct: 174 MVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSA 233

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED-AIGVFGEMIDKDIIS 172
              LG+L +  ++    +K   ER VVI   ++++Y +  SV D AI  F  MI+++  +
Sbjct: 234 VKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYT 293

Query: 173 WNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           W+++IAA +  G ++ A     R P         +I G+AQ G I+DA ++   +P P  
Sbjct: 294 WSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIV 353

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVP---------------------MDEYTFS 271
            SWN+++TGY+    V EA  LF +M  ++                       + E   S
Sbjct: 354 VSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRS 413

Query: 272 TMLSGIAGLS----------ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            ML  ++ L+          AL  G  +HS  +K G   +    +AL+ MY KC  +E A
Sbjct: 414 GMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYA 473

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  K++V+WN+ +    +N  L +    F+ +     L  D V++  +++A +H
Sbjct: 474 RQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM-----LSRDDVSWTTIISAYAH 528

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR---ELGFGSYG 438
            +   + +   F++M  ++ + P       ++ + G  G     Q++     +LG  S  
Sbjct: 529 AEQSNEAMGA-FKTMFCEHEL-PNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSEL 586

Query: 439 VVWRALLSASGACSDLDVARI 459
           +V  AL+S    C   D  RI
Sbjct: 587 IVANALISMYFKCGCADSRRI 607



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 162/346 (46%), Gaps = 45/346 (13%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           ++  + +A ++F  +P+  +++WNS+IS Y  +G    A +L+          DA S   
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY----------DAISG-- 93

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
                   G+++ G                     L+  YG+ G V +A  VF  M++++
Sbjct: 94  --------GNMRTGA-------------------ILLSGYGRLGRVLEARRVFDGMLERN 126

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
            ++WN++I+   +NG++ +A      +P+ D  S+N ++ G      + DA  +   MP 
Sbjct: 127 TVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPE 186

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            N  SW  +++GY       +A  +F +M  + +  D+  F++ LS + GL  L     +
Sbjct: 187 RNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESL 246

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQV-EIADSMFRSLCRKNLVTWNAMITGYARNGD 348
               +K G +  +V+ +A+L++YS+   V + A   F S+  +N  TW+ MI   +  G 
Sbjct: 247 RVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGR 306

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD---IPFDKVSE 391
           +   I ++E+   V+ +   +   +  LA C   D   I F+++ E
Sbjct: 307 IDAAIAVYER-DPVKSIACRT-ALITGLAQCGRIDDARILFEQIPE 350



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 36/239 (15%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H   +K G   N F   AL+  Y K  ++  A ++F  +    +VSWNS ++  VQ+ 
Sbjct: 440 QVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQND 499

Query: 84  KYRKALNLFVE-LERSEI--------YADAYSFTSALAA--------------------- 113
              +A N F   L R ++        YA A     A+ A                     
Sbjct: 500 LLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLG 559

Query: 114 -CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS 172
            CG LG+ ++G  IH+  +K  ++  +++AN LI MY KCG   D+  +F  M ++DI +
Sbjct: 560 VCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCA-DSRRIFDLMEERDIFT 618

Query: 173 WNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSM 227
           WN++I   A++G    A      + +    P+ +++  ++N  +  G +++      SM
Sbjct: 619 WNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSM 677



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 94/191 (49%), Gaps = 3/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN  +L  LL     LG     QQ+H   +K G  S + V+ AL+  Y K    AD+ ++
Sbjct: 549 PNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGC-ADSRRI 607

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  + +WN++I+GY Q G  R+A+ ++  +E + +  +  +F   L AC   G +
Sbjct: 608 FDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLV 667

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G      + + Y L        C++D+ G+ G V+ A     +M I+ D + W++++ 
Sbjct: 668 DEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLG 727

Query: 179 ASARNGNLELA 189
           A   + N E+ 
Sbjct: 728 ACKIHKNAEIG 738



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 77/153 (50%), Gaps = 10/153 (6%)

Query: 208 INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
           I  + + G + +A  +  +MP  +  +WNS+++ Y +      A  L+  +   ++    
Sbjct: 41  IRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNM---- 96

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVVASALLDMYSKCGQVEIADSMFR 326
            T + +LSG   L     G ++ +  +  G L+ + V  +A++  Y + G + +A  +F 
Sbjct: 97  RTGAILLSGYGRL-----GRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFD 151

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           ++  +++ +WN+M+TGY  +  +     LFE++
Sbjct: 152 AMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKM 184


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  248 bits (632), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 161/531 (30%), Positives = 272/531 (51%), Gaps = 57/531 (10%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           LH + +K G  ++VFV   L+  Y K   LA A ++F+E+     V++N+++ G  + G 
Sbjct: 371 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 430

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           + +AL LF  + R+      YS             L L    HS+    S+   V + N 
Sbjct: 431 HTQALQLFAAMRRA-----GYSRHP----------LHLLQYSHSRSRSTSV-LNVFVNNS 474

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LEL-----AFGFLHR 195
           L+D Y KC  ++D   +F EM ++D +S+N +IAA A N      L L       GF  +
Sbjct: 475 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 534

Query: 196 -LPNPDTISY-----------------------------NEVINGIAQFGDIEDAIMILS 225
            LP    +S                              N +I+  ++ G ++ A    S
Sbjct: 535 VLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFS 594

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           +    ++ SW +++TGYV   +  EAL LF +M+   +  D  TFS+++   + L+ +  
Sbjct: 595 NRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGL 654

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  +HS +I+ G  +S+   S L+DMY+KCG ++ A   F  +  +N ++WNA+I+ YA 
Sbjct: 655 GRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAH 714

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
            G+    I++FE +       PDSVTFL+VLAACSH  +  D+  +YF  M   Y I P 
Sbjct: 715 YGEAKNAIKMFEGMLHC-GFNPDSVTFLSVLAACSHNGLA-DECMKYFHLMKHQYSISPW 772

Query: 406 VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465
            EH   +I  +G+ G   + Q+M+ E+ F +  ++W ++L +     + ++AR++A ++ 
Sbjct: 773 KEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLF 832

Query: 466 KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            +E      YV+L N+Y   G W+ A+ ++  MR+RG+RKE+G SW+E++ 
Sbjct: 833 GMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQ 883



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 170/367 (46%), Gaps = 29/367 (7%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           N+F    ++  Y     L  A  +F+  P  +  +W  ++  +  +G+   AL+LF  + 
Sbjct: 287 NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 346

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
              +  D  + T+ L   G         ++H   +K+ L+  V + N L+D Y K G + 
Sbjct: 347 GEGVIPDRVTVTTVLNLPGCTVP-----SLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLA 401

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF-------------LHRLPNPDTIS 203
            A  VF EM DKD +++N+++   ++ G    A                LH L    + S
Sbjct: 402 AARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQYSHSRS 461

Query: 204 Y----------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
                      N +++  ++   ++D   +   MP  ++ S+N I+  Y         L 
Sbjct: 462 RSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLR 521

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
           LF EMQ          ++TMLS    L  +  G  IH+ ++  GL +  ++ +AL+DMYS
Sbjct: 522 LFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYS 581

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           KCG ++ A S F +   K+ ++W A+ITGY +NG   + ++LF  ++    L+PD  TF 
Sbjct: 582 KCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRA-GLRPDRATFS 640

Query: 374 NVLAACS 380
           +++ A S
Sbjct: 641 SIIKASS 647



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 142/295 (48%), Gaps = 21/295 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  ++  G  S   +  AL+  Y K   L  A   F    + S +SW +LI+GYVQ+
Sbjct: 555 KQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQN 614

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G++ +AL LF ++ R+ +  D  +F+S + A   L  + LG  +HS +++   +  V   
Sbjct: 615 GQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSG 674

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF----GFLHRLPN 198
           + L+DMY KCG +++A+  F EM +++ ISWN+VI+A A  G  + A     G LH   N
Sbjct: 675 SVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFN 734

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS-SSWNSILTGYVNR-NRVPEALHLFG 256
           PD++++  V+   +  G  ++ +     M    S S W       ++   RV      F 
Sbjct: 735 PDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRV----GCFS 790

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           ++Q   V   E  F            + W  ++HSC I    + + V A  L  M
Sbjct: 791 QVQKMLV---EMPFKA--------DPIIWTSILHSCRIHGNQELARVAADKLFGM 834



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 111/236 (47%), Gaps = 13/236 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      +++ASS L      +QLH Y+++SG+ S+VF  + L+  Y K   L +A + 
Sbjct: 634 PDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRT 693

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+ + +SWN++IS Y   G+ + A+ +F  +       D+ +F S LAAC   G  
Sbjct: 694 FDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLA 753

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIA 178
              M   H    +YS+        C+ID  G+ G       +  EM  K D I W S++ 
Sbjct: 754 DECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILH 813

Query: 179 ASARNGNLELA-------FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           +   +GN ELA       FG    +   D   Y  + N  A+ G  EDA  +   M
Sbjct: 814 SCRIHGNQELARVAADKLFG----MEPTDATPYVILSNIYARAGQWEDAACVKKIM 865



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 148/327 (45%), Gaps = 25/327 (7%)

Query: 183 NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGY 242
           +G+L  A     ++P+ +  S N +++  +  GD+  A  +  S P  N+++W  ++  +
Sbjct: 270 SGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAH 329

Query: 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
               R  +AL LF  M  + V  D  T +T+L+ + G +  +    +H   IK GLD  +
Sbjct: 330 AAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLN-LPGCTVPS----LHPFAIKFGLDTHV 384

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
            V + LLD Y K G +  A  +F  +  K+ VT+NAM+ G ++ G  T+ ++LF  ++  
Sbjct: 385 FVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRA 444

Query: 363 ------------RDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
                          +  S + LNV    S  D  F    +  + M + +   P  ++  
Sbjct: 445 GYSRHPLHLLQYSHSRSRSTSVLNVFVNNSLLD--FYSKCDCLDDMRRLFDEMPERDNVS 502

Query: 411 SMIRLMGQ-----KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465
             + +           V R  R +++LGF    + +  +LS +G+  D+ + +   A+++
Sbjct: 503 YNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLV 562

Query: 466 KLE-GDSDYVYVMLCNLYTSHGNWDVA 491
            L     D +   L ++Y+  G  D A
Sbjct: 563 LLGLASEDLLGNALIDMYSKCGMLDAA 589


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 174/605 (28%), Positives = 287/605 (47%), Gaps = 95/605 (15%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    + +A ++L   +    LH  + +SGF SNVFV  A++  Y K  +L  AH M
Sbjct: 257 PDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNM 316

Query: 61  FVEIPQPSV---VSWNSLISGYVQSGKYRKALNLFVELE-RSEIYADAYSFTSALAACGQ 116
           F ++    +   VSWNS++S Y+ +     AL LF ++  R  +  D  S  + L AC  
Sbjct: 317 FDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACAS 376

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM----------- 165
           L +   G  +H   ++  L   V + N ++DMY KCG +E+A  VF  M           
Sbjct: 377 LAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAM 436

Query: 166 ------------------------IDKDIISWNSVIAASARNGN----LEL--------- 188
                                   I+ D+++W +VI   A+ G     L++         
Sbjct: 437 VTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGS 496

Query: 189 -----------------------------AFGFLHRLPNPDTISYN-EVINGI----AQF 214
                                        A  F+  L  PD  + + +VING+    A+ 
Sbjct: 497 RPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKC 556

Query: 215 GDIEDAIMILSSMPSPNSS---SWNSILTGYVNRNRVPEALHLFGEM--QSKDVPMDEYT 269
              E A  +  S+ SP      +W  ++ GY        AL LF  M    K +  +++T
Sbjct: 557 QSTEVARKMFDSV-SPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFT 615

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV-VASALLDMYSKCGQVEIADSMFRSL 328
            S  L   A L+AL +G  +H+ V++    + ++ VA+ L+DMYSK G V+ A  +F ++
Sbjct: 616 LSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNM 675

Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDK 388
            ++N V+W +++TGY  +G     + +F++++ V  L PD +TFL VL ACSH+ +  D 
Sbjct: 676 PQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKV-PLVPDGITFLVVLYACSHSGM-VDH 733

Query: 389 VSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSAS 448
              +F  M+KD+G+ P  EH   M+ L G+ G +  A ++I E+      VVW ALLSA 
Sbjct: 734 GINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSAC 793

Query: 449 GACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAG 508
              S++++   +A  +++LE  +D  Y +L N+Y +   W   + +R  M+  G++K  G
Sbjct: 794 RLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPG 853

Query: 509 CSWIE 513
           CSWI+
Sbjct: 854 CSWIQ 858



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/451 (26%), Positives = 194/451 (43%), Gaps = 93/451 (20%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP--SVVSWNSLISG 78
           + + LH   +  G L ++  +T L+G Y   NS A A  +   +P    SV  WN LI  
Sbjct: 176 HAKLLHQQSIMQGLLFHL--ATNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRR 233

Query: 79  YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
            +  G  R    L+ +++      D Y+F     AC  L SL LG ++H+ + +      
Sbjct: 234 ALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASN 293

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDK---DIISWNSVIAASARNGNLELAFGFLHR 195
           V + N ++ MYGKCG++  A  +F ++  +   D++SWNSV++A     +   A    H+
Sbjct: 294 VFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHK 353

Query: 196 -----LPNPDTISY-----------------------------------NEVINGIAQFG 215
                L +PD IS                                    N V++  A+ G
Sbjct: 354 MTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCG 413

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275
            +E+A  +   M   +  SWN+++TGY    R+  AL LF  M  +++ +D  T++ +++
Sbjct: 414 KMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVIT 473

Query: 276 GIA-----------------------------------GLSALTWGMLIHSCVIK----- 295
           G A                                    + AL  G   H   IK     
Sbjct: 474 GYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNL 533

Query: 296 QGLDA---SIVVASALLDMYSKCGQVEIADSMFRSLCRK--NLVTWNAMITGYARNGDLT 350
            G D     + V + L+DMY+KC   E+A  MF S+  K  ++VTW  MI GYA++GD  
Sbjct: 534 DGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDAN 593

Query: 351 KVIELFEQL-KTVRDLQPDSVTFLNVLAACS 380
             ++LF  + K  + ++P+  T    L AC+
Sbjct: 594 NALQLFSGMFKMDKSIKPNDFTLSCALVACA 624


>gi|297604972|ref|NP_001056430.2| Os05g0581300 [Oryza sativa Japonica Group]
 gi|255676606|dbj|BAF18344.2| Os05g0581300 [Oryza sativa Japonica Group]
          Length = 704

 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 163/557 (29%), Positives = 279/557 (50%), Gaps = 49/557 (8%)

Query: 5   VLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEI 64
           ++F    A++D  +  +   LH + ++S  +S+VFV+TAL   Y K   L  A K+F E+
Sbjct: 75  LVFKSCAAAADARFLPHAASLHAFAVRSSAVSSVFVATALADVYAKAGCLGLALKVFDEM 134

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
           P  +VVSW +L++   ++G+  +AL  F E+  S ++ D+Y++ +AL AC   G L  G 
Sbjct: 135 PHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACADAGLLSRGR 194

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
            +H+   K  L+    +AN L  +Y +C  V+ A+     M  +D+ +W +VI+A  + G
Sbjct: 195 EVHAFCAKLGLDSTPYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTTVISAYVQTG 254

Query: 185 NLELAFGFLHRL--------PNPDTISYNEVI---------------------NGIAQFG 215
             + A     R+         +P+  +Y  VI                      G A   
Sbjct: 255 RAKEAIEAFVRMLREESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACAR 314

Query: 216 DIEDAIMILSSMPS---------------PNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            + ++++ L +  +                +  SW++I++GY       +A  LF EM+ 
Sbjct: 315 SVANSLVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRH 374

Query: 261 KD-VPM-DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
               P  +E+T +++LS  A  ++L  G  +H+  +  GL+   ++ SAL+DMY K G +
Sbjct: 375 HSGCPRPNEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSM 434

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
             AD +F    + ++V+W AMI GYA +G   K +ELF+++  V  L+PD VTF+ VL A
Sbjct: 435 LDADIVFSHRVKDDVVSWTAMIVGYAEHGHSKKALELFQEMCHV-GLKPDHVTFIGVLNA 493

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY- 437
           C H     +    Y   M + YG+ P  EH   ++ L+G+ G +  A+ +I ++      
Sbjct: 494 CCHAG-EVELGLRYLNEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGKIAANERD 552

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497
           GVVW +LL A  A  + +  + +A   ++ E      +V + NLY S G W  A+  R+ 
Sbjct: 553 GVVWTSLLRACAARGEEETGKKAAERAMEAEPWGAGAHVAMANLYASKGQWHEAAQERHM 612

Query: 498 MRERGLRKEAGCSWIEV 514
           M+++G+ K AG S I V
Sbjct: 613 MKQKGVVKGAGWSSITV 629



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 183/382 (47%), Gaps = 51/382 (13%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE---IYADAYS 106
           + + LADAH++F  +P+   V++ +L++G+  +G +  A+ LF  L  S      AD + 
Sbjct: 13  RSSRLADAHRLFDGMPRRDEVAYATLLAGHAAAGDFPGAMALFSRLRASSPPLAPADPFV 72

Query: 107 FTSALAACGQLGS---LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
            +    +C        L    ++H+  V+ S    V +A  L D+Y K G +  A+ VF 
Sbjct: 73  LSLVFKSCAAAADARFLPHAASLHAFAVRSSAVSSVFVATALADVYAKAGCLGLALKVFD 132

Query: 164 EMIDKDIISWNSVIAASARNGNLELAF----------------------------GFLHR 195
           EM  K+++SW +++A+  R G    A                             G L R
Sbjct: 133 EMPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACADAGLLSR 192

Query: 196 LPNP---------DTISY--NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
                        D+  Y  N +    A+  D++ A+  +S M + + ++W ++++ YV 
Sbjct: 193 GREVHAFCAKLGLDSTPYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTTVISAYVQ 252

Query: 245 RNRVPEALHLFGEMQSKDVPM----DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
             R  EA+  F  M  ++  +    +EYT++ +++  A ++ +  G  +H+   ++G   
Sbjct: 253 TGRAKEAIEAFVRMLREESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQAARKGFAC 312

Query: 301 SIVVASALLDMYSK-CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           +  VA++L+ +Y++  G +  AD++FR    K++V+W+A+I+GYA+ G       LF ++
Sbjct: 313 ARSVANSLVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREM 372

Query: 360 KTVRDL-QPDSVTFLNVLAACS 380
           +      +P+  T  ++L+ C+
Sbjct: 373 RHHSGCPRPNEFTLASLLSVCA 394



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 129/274 (47%), Gaps = 12/274 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFY-RKINSLADAHK 59
           PNEY    ++ A +D+ W    +QLH    + GF     V+ +L+  Y R    L+ A  
Sbjct: 277 PNEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACARSVANSLVTLYTRAAGCLSAADA 336

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE--IYADAYSFTSALAACGQL 117
           +F E     VVSW+++ISGY Q G    A  LF E+         + ++  S L+ C   
Sbjct: 337 VFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGCPRPNEFTLASLLSVCATA 396

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
            SL  G  +H+  V   LE   +I + LIDMYGK GS+ DA  VF   +  D++SW ++I
Sbjct: 397 ASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADIVFSHRVKDDVVSWTAMI 456

Query: 178 AASARNGN----LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS---- 229
              A +G+    LEL     H    PD +++  V+N     G++E  +  L+ M      
Sbjct: 457 VGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNACCHAGEVELGLRYLNEMNQIYGL 516

Query: 230 -PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
            P    +  ++       R+ EA  L G++ + +
Sbjct: 517 YPAKEHYGCVVDLLGRAGRINEAEELIGKIAANE 550


>gi|225441775|ref|XP_002277828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Vitis vinifera]
          Length = 773

 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 156/561 (27%), Positives = 284/561 (50%), Gaps = 56/561 (9%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE+    +L+A   L      +Q+H +++K GF  +VFV T+L+  Y +   L  A K++
Sbjct: 178 NEHTCSVILQACDSLENLVRGEQIHGFVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVY 237

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +    V   N +IS Y ++G   KA+ +F+ L  S +  + Y+FT+ ++AC     ++
Sbjct: 238 SNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLHLLGSGLEPNDYTFTNVISACNGDIDVE 297

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           +   +H   +K      + + N ++ +Y K G +E+A   F  M +++++SW ++++   
Sbjct: 298 VLRVLHGMCIKCGCGDEISVGNAIVSVYVKHGMLEEAEKSFCGMGERNLVSWTALLSGYV 357

Query: 182 RNGN-----------LELAFGFLHRLPNPDTISYNEVING----------------IAQF 214
           +NGN           LEL  GF       D+  +  +++G                + + 
Sbjct: 358 KNGNGKKALEGFSQILELGVGF-------DSCCFATLLDGCSECKNLGLGLQIHGFVVKL 410

Query: 215 GDIED-------------------AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           G + D                   A ++  S+   N  S+N+IL+GY+  +   +A+ LF
Sbjct: 411 GYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAILSGYIGADE-EDAMALF 469

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
            +++  D+  D  TF+ +LS  A  + L  G  +H+ +IK G +A+  V +A++ MY+KC
Sbjct: 470 SQLRLADIKPDSVTFARLLSLSADQACLVKGKCLHAYIIKTGFEANPSVGNAVITMYAKC 529

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G +  A  +F S+   + ++WNA+I+ YA +G   K + LFE++K   +  PD +T L+V
Sbjct: 530 GSIGDACQLFYSMNYLDSISWNAVISAYALHGQGRKALILFEEMKK-EEFVPDEITILSV 588

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L ACS++ +  ++    F  M   YGIKP +EH   M+ L+G+ G +  A   I    F 
Sbjct: 589 LQACSYSGL-LEEGFCLFNDMESKYGIKPEIEHFACMVDLLGRAGYLSEAMSFINRSPFS 647

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
              ++WR L+       DL+  +I++  ++ L  +    Y+++ NLY   G  + A+ +R
Sbjct: 648 GSPLLWRTLVHVCKLHGDLNFGQIASKHLLDLAPEEAGSYILVSNLYAGGGMLNEAARVR 707

Query: 496 NFMRERGLRKEAGCSWIEVEN 516
             M +  + KEAG SWIE++N
Sbjct: 708 TVMNDLKVSKEAGSSWIEIDN 728



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 186/394 (47%), Gaps = 41/394 (10%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q +H ++ K G+ ++ F    L+  Y K N L DA  +F E+   + ++W +LI G++Q 
Sbjct: 98  QAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEMLVRNTITWTTLIKGHLQV 157

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
                   +  E+       + ++ +  L AC  L +L  G  IH  ++K   +  V + 
Sbjct: 158 NDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQIHGFVIKRGFDEDVFVG 217

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG-FLHRL----- 196
             LI MY +CG +  A  V+  +  KD+   N +I+   + G  E A G FLH L     
Sbjct: 218 TSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLHLLGSGLE 277

Query: 197 PNP--------------------------------DTISY-NEVINGIAQFGDIEDAIMI 223
           PN                                 D IS  N +++   + G +E+A   
Sbjct: 278 PNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAIVSVYVKHGMLEEAEKS 337

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              M   N  SW ++L+GYV      +AL  F ++    V  D   F+T+L G +    L
Sbjct: 338 FCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDGCSECKNL 397

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G+ IH  V+K G    + V +AL+D+Y+KC ++  A  +F SL  KN+V++NA+++GY
Sbjct: 398 GLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAILSGY 457

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
               D    + LF QL+ + D++PDSVTF  +L+
Sbjct: 458 I-GADEEDAMALFSQLR-LADIKPDSVTFARLLS 489



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 188/412 (45%), Gaps = 51/412 (12%)

Query: 1   PNEYVLFHLLRA-SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           PN+Y   +++ A + D+  +   + LH   +K G    + V  A++  Y K   L +A K
Sbjct: 278 PNDYTFTNVISACNGDIDVEVL-RVLHGMCIKCGCGDEISVGNAIVSVYVKHGMLEEAEK 336

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
            F  + + ++VSW +L+SGYV++G  +KAL  F ++    +  D+  F + L  C +  +
Sbjct: 337 SFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDGCSECKN 396

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L LG+ IH  +VK      V +   LID+Y KC  +  A  VF  ++DK+I+S+N++++ 
Sbjct: 397 LGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAILSG 456

Query: 180 SARNGNLELAFGFLHRLP----NPDTISY------------------------------- 204
                + E A     +L      PD++++                               
Sbjct: 457 YI-GADEEDAMALFSQLRLADIKPDSVTFARLLSLSADQACLVKGKCLHAYIIKTGFEAN 515

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N VI   A+ G I DA  +  SM   +S SWN++++ Y    +  +AL LF EM+ 
Sbjct: 516 PSVGNAVITMYAKCGSIGDACQLFYSMNYLDSISWNAVISAYALHGQGRKALILFEEMKK 575

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           ++   DE T  ++L   +    L  G  L +    K G+   I   + ++D+  + G + 
Sbjct: 576 EEFVPDEITILSVLQACSYSGLLEEGFCLFNDMESKYGIKPEIEHFACMVDLLGRAGYLS 635

Query: 320 IADSMF-RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL--KTVRDLQPD 368
            A S   RS    + + W  ++     +GDL      F Q+  K + DL P+
Sbjct: 636 EAMSFINRSPFSGSPLLWRTLVHVCKLHGDLN-----FGQIASKHLLDLAPE 682



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 131/280 (46%), Gaps = 10/280 (3%)

Query: 173 WNSVIAASARNGNLELA---FGFLHRLP-NPDTISYNEVINGIAQFGDIEDAIMILSSMP 228
           W  ++  S  +G+L L      FL +L    D    N ++N   +F  + DA  +   M 
Sbjct: 81  WPQLLQISIGSGDLMLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEML 140

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             N+ +W +++ G++  N V     +  EM       +E+T S +L     L  L  G  
Sbjct: 141 VRNTITWTTLIKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQ 200

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           IH  VIK+G D  + V ++L+ MYS+CG +  A+ ++ +L  K++   N MI+ Y + G 
Sbjct: 201 IHGFVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGC 260

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
             K I +F  L     L+P+  TF NV++AC + DI  + V      M    G    +  
Sbjct: 261 GEKAIGVFLHLLG-SGLEPNDYTFTNVISAC-NGDIDVE-VLRVLHGMCIKCGCGDEISV 317

Query: 409 CCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV-WRALLSA 447
             +++ +  + G +  A++     G G   +V W ALLS 
Sbjct: 318 GNAIVSVYVKHGMLEEAEKSF--CGMGERNLVSWTALLSG 355



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 136/302 (45%), Gaps = 40/302 (13%)

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
           G L LG AIH+ + K   +      N L+++YGK   + DA  VF EM+ ++ I+W ++I
Sbjct: 92  GDLMLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEMLVRNTITWTTLI 151

Query: 178 AASARNGNLELAF--------------------------------------GF-LHRLPN 198
               +  ++E  F                                      GF + R  +
Sbjct: 152 KGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQIHGFVIKRGFD 211

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
            D      +I+  ++ GD+  A  + S++   +    N +++ Y       +A+ +F  +
Sbjct: 212 EDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLHL 271

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
               +  ++YTF+ ++S   G   +    ++H   IK G    I V +A++ +Y K G +
Sbjct: 272 LGSGLEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAIVSVYVKHGML 331

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           E A+  F  +  +NLV+W A+++GY +NG+  K +E F Q+  +  +  DS  F  +L  
Sbjct: 332 EEAEKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILEL-GVGFDSCCFATLLDG 390

Query: 379 CS 380
           CS
Sbjct: 391 CS 392



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 5/232 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      LL  S+D       + LH YI+K+GF +N  V  A++  Y K  S+ DA ++
Sbjct: 479 PDSVTFARLLSLSADQACLVKGKCLHAYIIKTGFEANPSVGNAVITMYAKCGSIGDACQL 538

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     +SWN++IS Y   G+ RKAL LF E+++ E   D  +  S L AC   G L
Sbjct: 539 FYSMNYLDSISWNAVISAYALHGQGRKALILFEEMKKEEFVPDEITILSVLQACSYSGLL 598

Query: 121 QLGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G  + + +  KY ++  +    C++D+ G+ G + +A+            + W +++ 
Sbjct: 599 EEGFCLFNDMESKYGIKPEIEHFACMVDLLGRAGYLSEAMSFINRSPFSGSPLLWRTLVH 658

Query: 179 ASARNGNL---ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
               +G+L   ++A   L  L   +  SY  V N  A  G + +A  + + M
Sbjct: 659 VCKLHGDLNFGQIASKHLLDLAPEEAGSYILVSNLYAGGGMLNEAARVRTVM 710


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 148/498 (29%), Positives = 259/498 (52%), Gaps = 39/498 (7%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF----VEIPQPSVVSWNSLISGYV 80
           +H +++K G  SN   +++L+  Y      A A  +     +     + V WN+LISG+ 
Sbjct: 78  IHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHN 137

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           +SG++  +   FV++ R+   A A ++ S L+ACG+   L LGM +H ++++  +     
Sbjct: 138 RSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQR 197

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
           + N L+DMY +CG ++ A  +F  M  + + SW SVI+                      
Sbjct: 198 VENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVIS---------------------- 235

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
                    G+ + G ++ A  +   MP  ++ +W +++ GYV   R  +AL  F  MQ 
Sbjct: 236 ---------GLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQI 286

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             V  DE+T  ++++  A L AL  G      + + G+   + V +AL+DMYSKCG +E 
Sbjct: 287 CKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIER 346

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ-PDSVTFLNVLAAC 379
           A  +F+ +  ++  TW A+I G A NG   + I++F ++  +R LQ PD VTF+ VL AC
Sbjct: 347 ALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRM--LRALQTPDEVTFVGVLTAC 404

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +H  +  DK  E+F SMT+ Y I PTV H   +I ++G+ G++  A   I ++       
Sbjct: 405 THAGL-VDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNST 463

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W  LL++     + ++  ++A  +++L+ D+   Y++L N+Y     W     +R  + 
Sbjct: 464 IWGTLLASCRVYGNSEIGELAAERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIM 523

Query: 500 ERGLRKEAGCSWIEVENV 517
           E+G++KE GCS IE+  +
Sbjct: 524 EKGIKKEPGCSMIEMNGI 541



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 97/203 (47%), Gaps = 4/203 (1%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +E+ +  ++ A + LG     +    Y+ + G   +VFV  AL+  Y K  S+  A  +F
Sbjct: 292 DEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVF 351

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            ++      +W ++I G   +G+  +A+++F  + R+    D  +F   L AC   G + 
Sbjct: 352 KDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVD 411

Query: 122 LGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
            G      + + Y++   VV   CLID+ G+ G +++A+    +M +  +   W +++A+
Sbjct: 412 KGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLAS 471

Query: 180 SARNGNLELAFGFLHRL--PNPD 200
               GN E+      RL   +PD
Sbjct: 472 CRVYGNSEIGELAAERLLELDPD 494


>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 799

 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 151/474 (31%), Positives = 245/474 (51%), Gaps = 34/474 (7%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           TAL+  Y +   L  A ++   +P+ + VSW +LI+ + Q G   +A+ L+ ++      
Sbjct: 320 TALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCR 379

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            +   F+S L+AC  L  L+ G  IH++ +K      V +++ LIDMY KC    DA  +
Sbjct: 380 PNISCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTI 439

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F  + +K+I+ WNS            LA G+          SYN         G + +A+
Sbjct: 440 FDTLPEKNIVCWNS------------LASGY----------SYN---------GKMVEAM 468

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   MP+ N +SWN+I++GY    +  +AL  F  M +      E TFS++L   A L 
Sbjct: 469 YLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANLC 528

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           +L  G + H+  IK G++ SI + +AL DMY+K G ++ +  MF  +  +N VTW AMI 
Sbjct: 529 SLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQ 588

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G A NG   + I LFE +     + P+  TFL +L ACSH  +  ++   YFE M + +G
Sbjct: 589 GLAENGLAEESILLFEDMMAT-GMTPNEHTFLALLFACSHGGL-VEQAIHYFEKM-QAWG 645

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I P  +H   M+ ++ + G +  A+ ++ +    S    W ALLSA     + ++   +A
Sbjct: 646 ISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGERAA 705

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
             + +L  D+   YV+L N+Y S G W  A+ +R  M+   L+K+ GCSW++V 
Sbjct: 706 KRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVR 759



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 157/323 (48%), Gaps = 40/323 (12%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           T ++    K   +A+A +++ + P  SV  + + ISG+V++  +  AL +F ++    + 
Sbjct: 187 TTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMVSCGVR 246

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS-LERGVVIANCLIDMYGKCGSVEDAIG 160
            +  +F   + AC   G   L M+I    +K +  E  + + N LI +Y + G    A  
Sbjct: 247 PNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFFESSIEVQNSLITLYLRMGDAAAARK 306

Query: 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220
           VF EM  KD++SW +++   + +G+L+ A   L  +P  + +S+  +I    Q G+  +A
Sbjct: 307 VFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEA 366

Query: 221 IMILSSMPS----PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           + + S M +    PN S                                    FS++LS 
Sbjct: 367 VKLYSQMLADGCRPNIS-----------------------------------CFSSVLSA 391

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            A L  L  G  IH+  +K G   ++ V+S+L+DMY KC +   A ++F +L  KN+V W
Sbjct: 392 CATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCW 451

Query: 337 NAMITGYARNGDLTKVIELFEQL 359
           N++ +GY+ NG + + + LF+++
Sbjct: 452 NSLASGYSYNGKMVEAMYLFKKM 474



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 109/234 (46%), Gaps = 4/234 (1%)

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS---WNSV 176
           L L +++H+  V+  +     +A+ L+  Y       +    FG+ +     S   ++ +
Sbjct: 99  LPLALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYDFM 158

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
           +    + G++  A G    +P    +SY  +++ + + G + +A+ +    PS + + + 
Sbjct: 159 VHEHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFT 218

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           + ++G+V       AL +F +M S  V  +  TF  M+    G       M I    IK 
Sbjct: 219 ATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKS 278

Query: 297 G-LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
              ++SI V ++L+ +Y + G    A  +F  +  K++V+W A++  Y+ +GDL
Sbjct: 279 NFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDL 332


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  247 bits (631), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 156/557 (28%), Positives = 284/557 (50%), Gaps = 91/557 (16%)

Query: 42  TALMGFYRKINSLADAHKMFVEI----PQPSVVSWNSLISG------------------- 78
           T L+G Y ++N   +A ++FV++     +P  V++ +L+SG                   
Sbjct: 113 TILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIK 172

Query: 79  ----------------YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQL 122
                           Y +S +   A  LF E+   EI  D+++F + L A   L  + L
Sbjct: 173 LGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEM--PEI--DSFTFAAVLCANIGLDDIVL 228

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR 182
           G  IHS ++K +    V ++N L+D Y K  SV DA  +F EM ++D +S+N +I+  A 
Sbjct: 229 GQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAW 288

Query: 183 NGNLELAFGFLHRL---------------------------------------PNPDTIS 203
           +G  + AF     L                                        + + + 
Sbjct: 289 DGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILV 348

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
            N +++  A+ G  E+A MI +++   ++  W ++++ YV +    E L LF +M+   V
Sbjct: 349 GNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASV 408

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             D+ TF+++L   A +++L+ G  +HS +IK G  +++   SALLD+Y+KCG ++ A  
Sbjct: 409 IADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQ 468

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
            F+ +  +N+V+WNAMI+ YA+NG+    ++ F+++  +  LQPDSV+FL VL+ACSH+ 
Sbjct: 469 TFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEM-VLSGLQPDSVSFLGVLSACSHSG 527

Query: 384 IPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           +    V E   +F SMT+ Y + P  EH  S++ ++ + G    A++++ E+      ++
Sbjct: 528 L----VEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIM 583

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYV-YVMLCNLYTSHGNWDVASVMRNFMR 499
           W ++L+A     + ++AR +A ++  +E   D   YV + N+Y + G W+  S +   MR
Sbjct: 584 WSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMR 643

Query: 500 ERGLRKEAGCSWIEVEN 516
           +RG++K    SW+E+++
Sbjct: 644 DRGVKKLPAYSWVEIKH 660



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 199/427 (46%), Gaps = 54/427 (12%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           QQ+H +++K+ F+ NVFVS AL+ FY K +S+ DA K+F E+P+   VS+N +ISGY   
Sbjct: 230 QQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWD 289

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           GK++ A +LF EL+ +      + F + L+        ++G  IH++ +  + +  +++ 
Sbjct: 290 GKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVG 349

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
           N L+DMY KCG  E+A  +F  +  +  + W ++I+A  + G  E      +++     I
Sbjct: 350 NSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVI 409

Query: 203 ---------------------------------------SYNEVINGIAQFGDIEDAIMI 223
                                                  S + +++  A+ G I+DA+  
Sbjct: 410 ADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQT 469

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              MP  N  SWN++++ Y         L  F EM    +  D  +F  +LS  +  S L
Sbjct: 470 FQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSH-SGL 528

Query: 284 TWGMLIHSCVIKQ--GLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMI 340
               L H   + Q   LD      ++++DM  + G+   A+ +   +    + + W++++
Sbjct: 529 VEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVL 588

Query: 341 TG--YARNGDLTK--VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
                 +N +L +    +LF  ++ +RD  P  V   N+ AA       ++ VS+  ++M
Sbjct: 589 NACRIHKNQELARRAADQLF-NMEELRDAAP-YVNMSNIYAAAGQ----WENVSKVHKAM 642

Query: 397 TKDYGIK 403
            +D G+K
Sbjct: 643 -RDRGVK 648



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 212/434 (48%), Gaps = 15/434 (3%)

Query: 40  VSTALM-GFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS 98
           VST +M   Y K  +L +A K+F  + + + V+W  LI GY Q  ++++A  LFV+++R 
Sbjct: 79  VSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRC 138

Query: 99  EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
               D  +F + L+ C           + ++I+K   +  +++ N L+D Y K   ++ A
Sbjct: 139 GTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLA 198

Query: 159 IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVI-NGIAQFGDI 217
             +F EM + D  ++ +V+ A+    ++ L    +H         +N  + N +  F   
Sbjct: 199 CQLFKEMPEIDSFTFAAVLCANIGLDDIVLG-QQIHSFVIKTNFVWNVFVSNALLDFYSK 257

Query: 218 EDAIM----ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
            D+++    +   MP  +  S+N I++GY    +   A  LF E+Q       ++ F+TM
Sbjct: 258 HDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATM 317

Query: 274 LSGIAGLSALTW--GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
           LS IA  + L W  G  IH+  I    D+ I+V ++L+DMY+KCG+ E A+ +F +L  +
Sbjct: 318 LS-IAS-NTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHR 375

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE 391
           + V W AMI+ Y + G   + ++LF +++    +  D  TF ++L A +   I    + +
Sbjct: 376 SAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVI-ADQATFASLLRASA--SIASLSLGK 432

Query: 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC 451
              S     G    V    +++ +  + G +  A +  +E+   +  V W A++SA    
Sbjct: 433 QLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNI-VSWNAMISAYAQN 491

Query: 452 SDLDVARISAAEVI 465
            + +    S  E++
Sbjct: 492 GEAEATLKSFKEMV 505



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 149/309 (48%), Gaps = 28/309 (9%)

Query: 12  ASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVS 71
           AS+ L W+   +Q+H   + +   S + V  +L+  Y K     +A  +F  +   S V 
Sbjct: 321 ASNTLDWEM-GRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVP 379

Query: 72  WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIV 131
           W ++IS YVQ G Y + L LF ++ ++ + AD  +F S L A   + SL LG  +HS I+
Sbjct: 380 WTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFII 439

Query: 132 KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG 191
           K      V   + L+D+Y KCGS++DA+  F EM D++I+SWN++I+A A+NG  E    
Sbjct: 440 KSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLK 499

Query: 192 FLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PNSSSWNSILTGY 242
               +      PD++S+  V++  +  G +E+ +   +SM       P    + S++   
Sbjct: 500 SFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDML 559

Query: 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
               R  EA  L  EM     P+D                + W  ++++C I +  + + 
Sbjct: 560 CRSGRFNEAEKLMAEM-----PIDP-------------DEIMWSSVLNACRIHKNQELAR 601

Query: 303 VVASALLDM 311
             A  L +M
Sbjct: 602 RAADQLFNM 610



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 104/183 (56%), Gaps = 2/183 (1%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           LLRAS+ +   +  +QLH +I+KSGF+SNVF  +AL+  Y K  S+ DA + F E+P  +
Sbjct: 418 LLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRN 477

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM-AIH 127
           +VSWN++IS Y Q+G+    L  F E+  S +  D+ SF   L+AC   G ++ G+   +
Sbjct: 478 IVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFN 537

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNL 186
           S    Y L+        ++DM  + G   +A  +  EM ID D I W+SV+ A   + N 
Sbjct: 538 SMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQ 597

Query: 187 ELA 189
           ELA
Sbjct: 598 ELA 600



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 113/234 (48%), Gaps = 16/234 (6%)

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196
           +  V  N +I  Y K G++ +A  +F  M+++  ++W  +I   ++    + AF    ++
Sbjct: 76  KNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQM 135

Query: 197 ----PNPDTISYNEVINGIA------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246
                 PD +++  +++G        Q   ++  I+ L           N+++  Y   N
Sbjct: 136 QRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGY--DSRLIVGNTLVDSYCKSN 193

Query: 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
           R+  A  LF EM      +D +TF+ +L    GL  +  G  IHS VIK     ++ V++
Sbjct: 194 RLDLACQLFKEMPE----IDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSN 249

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           ALLD YSK   V  A  +F  +  ++ V++N +I+GYA +G      +LF +L+
Sbjct: 250 ALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQ 303



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 87/175 (49%)

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILS 225
            D D    N  +    +NG L  A     ++P+ +T+S N +I+G  + G++ +A  +  
Sbjct: 43  FDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFD 102

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
            M    + +W  ++ GY   N+  EA  LF +MQ      D  TF T+LSG  G      
Sbjct: 103 GMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQ 162

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
              + + +IK G D+ ++V + L+D Y K  ++++A  +F+ +   +  T+ A++
Sbjct: 163 ITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVL 217



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 14/174 (8%)

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           I + ++K G D     ++  +  + K G++  A  +F  +  KN V+ N MI+GY ++G+
Sbjct: 34  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 93

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
           L +  +LF+ +     ++  +VT+  ++   S  +  F +  E F  M +  G +P  ++
Sbjct: 94  LGEARKLFDGM-----VERTAVTWTILIGGYSQLN-QFKEAFELFVQMQR-CGTEP--DY 144

Query: 409 CCSMIRLMGQKG-----EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
              +  L G  G     ++ + Q  I +LG+ S  +V   L+ +    + LD+A
Sbjct: 145 VTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLA 198


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  247 bits (631), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 144/497 (28%), Positives = 269/497 (54%), Gaps = 10/497 (2%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKI---NSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           Q+H   +K G  ++ + +  L+  +  I   ++L  A ++ +  P+P    +N+L+ GY 
Sbjct: 15  QIHGLFIKYGVDTDSYFTGKLI-LHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGYS 73

Query: 81  QSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
           +S +   ++ +FVE+ R   ++ D++SF   + A     SL+ G  +H + +K+ LE  +
Sbjct: 74  ESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHL 133

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            +   LI MYG CG VE A  VF EM   ++++WN+VI A  R  ++  A     ++   
Sbjct: 134 FVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVR 193

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           +  S+N ++ G  + G++E A  I S MP  +  SW++++ G  +     E+   F E+Q
Sbjct: 194 NHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQ 253

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
              +  +E + + +LS  +   +  +G ++H  V K G    + V +AL+DMYS+CG V 
Sbjct: 254 RAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVP 313

Query: 320 IADSMFRSLCRKN-LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           +A  +F  +  K  +V+W +MI G A +G   + + LF ++ T   + PD ++F+++L A
Sbjct: 314 MARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEM-TAYGVTPDGISFISLLHA 372

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH  +  ++  +YF  M + Y I+P +EH   M+ L G+ G++ +A   I ++      
Sbjct: 373 CSHAGL-IEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTA 431

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW-DVASVMRNF 497
           +VWR LL A  +  ++++A      + +L+ ++    V+L N Y + G W DVAS+ ++ 
Sbjct: 432 IVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSM 491

Query: 498 MRERGLRKEAGCSWIEV 514
           + +R ++K    S +EV
Sbjct: 492 IVQR-IKKTTAWSLVEV 507



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  L  +L A S  G   + + LH ++ K+G+   V V+ AL+  Y +  ++  A  +
Sbjct: 259 PNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLV 318

Query: 61  FVEIPQPS-VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F  + +   +VSW S+I+G    G+  +A+ LF E+    +  D  SF S L AC   G 
Sbjct: 319 FEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGL 378

Query: 120 LQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
           ++ G    S++ + Y +E  +    C++D+YG+ G ++ A     +M I    I W +++
Sbjct: 379 IEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLL 438

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVI---NGIAQFGDIEDAIMILSSM 227
            A + +GN+ELA     RL   D  +  +++   N  A  G  +D   I  SM
Sbjct: 439 GACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSM 491


>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  247 bits (631), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 149/551 (27%), Positives = 275/551 (49%), Gaps = 43/551 (7%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           +L+  +D G       +H Y++K      + +   L+  Y K   +  AH++F  +P+  
Sbjct: 65  ILQECTDAGDLRTGMSVHTYLVKLNINGFILIWNKLLSLYLKFGHIHHAHQLFDTMPRRD 124

Query: 69  VVSWNSLISGYVQSG-KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
           VVS+N++IS  V++       + L+ ++++ ++  +  +F   + AC  L +L+L    H
Sbjct: 125 VVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGACDGLIALRLRGIFH 184

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
           +  V+  L     + + L+D Y K   +EDAI  F E+++ D++SWN +I   ARN + E
Sbjct: 185 AHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIMELDLVSWNIMIDGCARNNSKE 244

Query: 188 LAFGFLHRLPNP----DTISYNEVINGIAQFGDIEDA----------------------- 220
            A     ++       D  +   +I   ++ GD++                         
Sbjct: 245 HAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAHETPIYNALI 304

Query: 221 -------------IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
                        + I  S+  PN  SW ++++G++   +  EA+ LF EM    V  ++
Sbjct: 305 TMYSKCEKGVASPVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVREND 364

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
           ++FS++L     L+ L  G  IH+ +IK      + V +AL+DMYSKCG +E A  +F  
Sbjct: 365 FSFSSILPVYGNLANLEQGKQIHARIIKSWFGLDLSVNNALIDMYSKCGSLEDAHLVFMK 424

Query: 328 LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387
           + + ++V+   MI  Y ++G   + +E+  ++K+   L PD VTFL  L ACSH  +  +
Sbjct: 425 MGKHDVVSCTTMIMSYGQHGKGKEALEILAEMKS-EGLVPDGVTFLGCLYACSHGGLVEE 483

Query: 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
            V   F+ M +D+ +KP  EH   ++ ++G+ G +  A+  I E+G  S  +VW  LL A
Sbjct: 484 GV-RVFKIMIEDHNLKPKREHFACVVDMLGRAGRLNEAENFIDEMGIESDVLVWETLLGA 542

Query: 448 SGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEA 507
                ++ +   SA ++++L+      YV+L N+Y   G+W+   ++R  +   GL+K+ 
Sbjct: 543 CRVHGEMVLGEKSAQKIMELQPGRHGPYVLLANIYAERGSWEDKVMVREKLVSHGLKKQV 602

Query: 508 GCSWIEVENVA 518
           GCSW+ +E ++
Sbjct: 603 GCSWVALETMS 613



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 140/296 (47%), Gaps = 41/296 (13%)

Query: 105 YSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGE 164
           + F+  L  C   G L+ GM++H+ +VK ++   ++I N L+ +Y K G +  A  +F  
Sbjct: 60  HQFSQILQECTDAGDLRTGMSVHTYLVKLNINGFILIWNKLLSLYLKFGHIHHAHQLFDT 119

Query: 165 MIDKDIISWNSVIAASARNGNLELAF-GFLHRLPNPDT---------------------- 201
           M  +D++S+N++I+AS RN    L   G   ++   D                       
Sbjct: 120 MPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGACDGLIALRL 179

Query: 202 ------------ISYNE-----VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
                       +S NE     +++G A+   +EDAI   + +   +  SWN ++ G   
Sbjct: 180 RGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIMELDLVSWNIMIDGCAR 239

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV 304
            N    A+ +F +M   +V +D +T ++++   +    L  GM  H   IK GL     +
Sbjct: 240 NNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAHETPI 299

Query: 305 ASALLDMYSKCGQ-VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            +AL+ MYSKC + V     +F S+   N+++W AMI+G+ +N    + I LF+++
Sbjct: 300 YNALITMYSKCEKGVASPVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLFKEM 355



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 132/265 (49%), Gaps = 10/265 (3%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINS-LADAHKMFV 62
           + L  +++  S  G   +  Q H   +K G      +  AL+  Y K    +A   K+F 
Sbjct: 263 FTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAHETPIYNALITMYSKCEKGVASPVKIFG 322

Query: 63  EIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQL 122
            I +P+++SW ++ISG++Q+ +  +A+ LF E+ R  +  + +SF+S L   G L +L+ 
Sbjct: 323 SISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLEQ 382

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR 182
           G  IH++I+K      + + N LIDMY KCGS+EDA  VF +M   D++S  ++I +  +
Sbjct: 383 GKQIHARIIKSWFGLDLSVNNALIDMYSKCGSLEDAHLVFMKMGKHDVVSCTTMIMSYGQ 442

Query: 183 NGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDA-----IMILSSMPSPNSS 233
           +G  + A   L  + +    PD +++   +   +  G +E+      IMI      P   
Sbjct: 443 HGKGKEALEILAEMKSEGLVPDGVTFLGCLYACSHGGLVEEGVRVFKIMIEDHNLKPKRE 502

Query: 234 SWNSILTGYVNRNRVPEALHLFGEM 258
            +  ++       R+ EA +   EM
Sbjct: 503 HFACVVDMLGRAGRLNEAENFIDEM 527


>gi|449439723|ref|XP_004137635.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 769

 Score =  247 bits (631), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 149/533 (27%), Positives = 268/533 (50%), Gaps = 53/533 (9%)

Query: 25  LHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           +H   LK GFL  ++F    ++ FY K   L+   ++F E+P+ +VVSW+++I+G+VQ G
Sbjct: 237 IHAKFLK-GFLPFSLFFHNHVLNFYVKCGRLSYGLQLFDEMPERNVVSWSAIIAGFVQHG 295

Query: 84  KYRKALNLFVELE-RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           +  +AL+LF  +     I  + ++  SAL AC     L     I++ IV+      V + 
Sbjct: 296 RPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLTQRLICSYQIYAFIVRLGYGSNVFLM 355

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF----GFLHRLP- 197
           N  +    +   + +A+ VF   + KD +SWN+++A     G L+LA+     F  R+  
Sbjct: 356 NAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMMA-----GYLQLAYFELPKFWRRMNL 410

Query: 198 ---NPDTISYNEVINGIAQFGDIE-----------------------------------D 219
               PD  ++  ++ G+A   +                                     D
Sbjct: 411 ESVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLD 470

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
                  M S +  SW  +  G +      +AL +  EM++  V ++++T +T L+  A 
Sbjct: 471 GFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALEVIYEMKNVGVRLNKFTLATALNSCAN 530

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
           L+++  G   H   IK G D  + V +ALLDMY+KCG +  A+ +FRS+  +++V+W  M
Sbjct: 531 LASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTM 590

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKD 399
           I G+A NG   + +++F++++   + +P+ +TF+ VL ACS      D+  +YF SM+ D
Sbjct: 591 IMGFAHNGQTKEALQIFDEMRK-GEAEPNHITFICVLNACSQGGF-IDEAWKYFSSMSAD 648

Query: 400 YGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARI 459
           +GI P+ +H   M+ L+G+ G +  A+ +I ++ F    +VW+ LL A     D++  + 
Sbjct: 649 HGIAPSEDHYVCMVNLLGRAGCIKEAEDLILQMPFQPGSLVWQTLLGACLVHGDIETGKR 708

Query: 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           +A   + L+ +    Y++L N++    NWD   ++R  M  R ++K  G SW+
Sbjct: 709 AAEHALNLDRNDPSTYILLSNMFAGGDNWDSVGILRELMETRDVKKVPGSSWM 761



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 115/233 (49%), Gaps = 4/233 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    +L   + L       Q+H  ++KSG+ +++ V  +L   Y K   L D  K 
Sbjct: 415 PDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLDGFKA 474

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+    V SW  + +G +Q G+  KAL +  E++   +  + ++  +AL +C  L S+
Sbjct: 475 FDEMSSSDVCSWTQMAAGCLQCGEPMKALEVIYEMKNVGVRLNKFTLATALNSCANLASI 534

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G   H   +K   +  V + N L+DMY KCG +  A  VF  M ++ ++SW ++I   
Sbjct: 535 EEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGF 594

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           A NG  + A      +      P+ I++  V+N  +Q G I++A    SSM +
Sbjct: 595 AHNGQTKEALQIFDEMRKGEAEPNHITFICVLNACSQGGFIDEAWKYFSSMSA 647



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 132/316 (41%), Gaps = 42/316 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQ-QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           PNE+ L   L A S L     C  Q++ +I++ G+ SNVF+  A +    +   L +A +
Sbjct: 315 PNEFTLVSALHACS-LTQRLICSYQIYAFIVRLGYGSNVFLMNAFLTALIRHEKLLEALE 373

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F        VSWN++++GY+Q   Y +    +  +    +  D ++F S L     L  
Sbjct: 374 VFESCLSKDTVSWNAMMAGYLQLA-YFELPKFWRRMNLESVKPDNFTFASILTGLAALSE 432

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            +LG+ +H ++VK      + + N L DMY K   + D    F EM   D+ SW  + A 
Sbjct: 433 FRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAG 492

Query: 180 SARNGNLELAFGFLHRLPN---------------------------------------PD 200
             + G    A   ++ + N                                        D
Sbjct: 493 CLQCGEPMKALEVIYEMKNVGVRLNKFTLATALNSCANLASIEEGKKFHGLRIKLGTDVD 552

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +++  A+ G +  A ++  SM   +  SW +++ G+ +  +  EAL +F EM+ 
Sbjct: 553 VCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRK 612

Query: 261 KDVPMDEYTFSTMLSG 276
            +   +  TF  +L+ 
Sbjct: 613 GEAEPNHITFICVLNA 628



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 144/315 (45%), Gaps = 42/315 (13%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
           + S L  C      + G AIH+K +K  L   +   N +++ Y KCG +   + +F EM 
Sbjct: 218 YVSFLQRCVLTSDSRHGSAIHAKFLKGFLPFSLFFHNHVLNFYVKCGRLSYGLQLFDEMP 277

Query: 167 DKDIISWNSVIAASARNGNLELA---FGFLH----RLPNPDTI---------------SY 204
           +++++SW+++IA   ++G    A   FG +H     +PN  T+               SY
Sbjct: 278 ERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLTQRLICSY 337

Query: 205 ------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246
                             N  +  + +   + +A+ +  S  S ++ SWN+++ GY+   
Sbjct: 338 QIYAFIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMMAGYLQLA 397

Query: 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
              E    +  M  + V  D +TF+++L+G+A LS    G+ +H  ++K G    I V +
Sbjct: 398 YF-ELPKFWRRMNLESVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGNDICVGN 456

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
           +L DMY K  ++      F  +   ++ +W  M  G  + G+  K +E+  ++K V  ++
Sbjct: 457 SLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALEVIYEMKNV-GVR 515

Query: 367 PDSVTFLNVLAACSH 381
            +  T    L +C++
Sbjct: 516 LNKFTLATALNSCAN 530



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 54/97 (55%)

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  IH+  +K  L  S+   + +L+ Y KCG++     +F  +  +N+V+W+A+I G+ +
Sbjct: 234 GSAIHAKFLKGFLPFSLFFHNHVLNFYVKCGRLSYGLQLFDEMPERNVVSWSAIIAGFVQ 293

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           +G   + + LF ++     + P+  T ++ L ACS T
Sbjct: 294 HGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLT 330


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  247 bits (631), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 155/549 (28%), Positives = 262/549 (47%), Gaps = 67/549 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L A S + W    ++LH YI++    SN FV+ AL+G YR+   +  A K+
Sbjct: 268 PDARTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKI 327

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE--------------------- 99
           F +  +    S+N++I GY+++G   KA  LF ++E+                       
Sbjct: 328 FSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWNCMISGHVDNFMF 387

Query: 100 --------------IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
                         I  D+++  S L     +  ++ G  IHS  +   L+    +   L
Sbjct: 388 DDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVGGAL 447

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYN 205
           ++MY KC  +  A   F E+ ++D  +WN++I+  AR                       
Sbjct: 448 VEMYCKCNDIIAAQMAFDEISERDTSTWNALISGYAR----------------------- 484

Query: 206 EVINGIAQFGDIEDAIMILSSMP-SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
                  Q G I + +  + S    PN  +WNSIL G V   +   A+ LF EMQ   + 
Sbjct: 485 -----CNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLR 539

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
            D YT   +L+  + L+ +  G  +H+  I+ G D+   + + L+DMY+KCG ++    +
Sbjct: 540 PDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYAKCGSIKHCYQV 599

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
           +  +   NLV  NAM+T YA +G   + I +F ++   R ++PD VTFL+VL++C H   
Sbjct: 600 YNKISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSR-VRPDHVTFLSVLSSCVHAGS 658

Query: 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRAL 444
              K+      + + Y I PT++H   M+ L+ + G++  A ++I+ +   +  V W AL
Sbjct: 659 I--KIGYECFYLMETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPMEADSVTWSAL 716

Query: 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504
           L       ++ +  I+A ++I+LE  +   YV+L NLY S G W   +  R  M ++G++
Sbjct: 717 LGGCFIHKEVALGEIAAEKLIELEPSNTGNYVLLANLYASAGRWHDLAKTRELMNDKGMQ 776

Query: 505 KEAGCSWIE 513
           K  GCSWIE
Sbjct: 777 KSPGCSWIE 785



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 224/463 (48%), Gaps = 42/463 (9%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           +L++S+ L   T  +QLH + +K+GF ++ FV T L+  Y   +S  DA  MF ++   +
Sbjct: 40  ILQSSNSL---TLGKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDAWHMFDKMTLKN 96

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEI--YADAYSFTSALAACGQLGSLQLGMAI 126
           + SW +++  ++  G + K   LF E     +    D + F   L  C  LG L+LG  +
Sbjct: 97  LHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLGDLELGRQV 156

Query: 127 HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNL 186
           H  ++K+     V + N LIDMYGKCGS+++A  V   M  KD +SWNS+I A   NG +
Sbjct: 157 HGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACVANGVV 216

Query: 187 ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246
             A   L                            M+LS +  PN  +W++++ G+ +  
Sbjct: 217 YEALDLLEN--------------------------MLLSEL-EPNVVTWSAVIGGFSSNA 249

Query: 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
              E++ LF  M    V  D  T +++L   + +  L  G  +H  +++  L ++  VA+
Sbjct: 250 YDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVAN 309

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
           AL+ MY +CG ++ A  +F    RK   ++N MI GY  NG++ K  ELF Q++    ++
Sbjct: 310 ALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQ-EGVE 368

Query: 367 PDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG-----QKGE 421
            D +++ N + +    +  FD     F  +  + GI+P      S++         ++G+
Sbjct: 369 RDRISW-NCMISGHVDNFMFDDALMLFRDLLME-GIEPDSFTLGSILTGFADMTCIRQGK 426

Query: 422 VWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
              +  +++  G  S   V  AL+     C+D+  A+++  E+
Sbjct: 427 EIHSIAIVK--GLQSNSFVGGALVEMYCKCNDIIAAQMAFDEI 467



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 191/391 (48%), Gaps = 63/391 (16%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H  +LK GF++NV+V  AL+  Y K  SL +A K+   + Q   VSWNS+I+  V +
Sbjct: 154 RQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACVAN 213

Query: 83  GKYRKALNLF--------------------------VELERSEIYA---------DAYSF 107
           G   +AL+L                            ++E  E++A         DA + 
Sbjct: 214 GVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPDARTL 273

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
            S L AC ++  L +G  +H  IV++ L     +AN L+ MY +CG ++ A  +F +   
Sbjct: 274 ASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFAR 333

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           K   S+N++I     NGN+  A                E+   + Q G   D I      
Sbjct: 334 KCAASYNTMIVGYLENGNVGKA---------------KELFYQMEQEGVERDRI------ 372

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
                 SWN +++G+V+     +AL LF ++  + +  D +T  ++L+G A ++ +  G 
Sbjct: 373 ------SWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGK 426

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
            IHS  I +GL ++  V  AL++MY KC  +  A   F  +  ++  TWNA+I+GYAR  
Sbjct: 427 EIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNALISGYARCN 486

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            + K+ EL E++K+    +P+  T+ ++LA 
Sbjct: 487 QIGKIRELVERMKS-DGFEPNVYTWNSILAG 516



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 82/197 (41%), Gaps = 40/197 (20%)

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
           P+   T+ST+L      ++LT G  +HS  IK G      V + LL MYS     E A  
Sbjct: 31  PLTSTTYSTILQSS---NSLTLGKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDAWH 87

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           MF  +  KNL +W A++  +   G   K   LFE+             FL     C    
Sbjct: 88  MFDKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEE-------------FL-----C---- 125

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEH-CCSMIRL-MGQKGEVWRAQRMIRELGFGSYGVVW 441
              D + E       D+ + P V + CC +  L +G++        M+ + GF +   V 
Sbjct: 126 ---DGLGEKL-----DFFVFPVVLNICCGLGDLELGRQ-----VHGMVLKHGFVTNVYVG 172

Query: 442 RALLSASGACSDLDVAR 458
            AL+   G C  LD A+
Sbjct: 173 NALIDMYGKCGSLDEAK 189


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  247 bits (631), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 144/497 (28%), Positives = 269/497 (54%), Gaps = 10/497 (2%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKI---NSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           Q+H   +K G  ++ + +  L+  +  I   ++L  A ++ +  P+P    +N+L+ GY 
Sbjct: 23  QIHGLFIKYGVDTDSYFTGKLI-LHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGYS 81

Query: 81  QSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
           +S +   ++ +FVE+ R   ++ D++SF   + A     SL+ G  +H + +K+ LE  +
Sbjct: 82  ESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHL 141

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            +   LI MYG CG VE A  VF EM   ++++WN+VI A  R  ++  A     ++   
Sbjct: 142 FVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVR 201

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           +  S+N ++ G  + G++E A  I S MP  +  SW++++ G  +     E+   F E+Q
Sbjct: 202 NHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQ 261

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
              +  +E + + +LS  +   +  +G ++H  V K G    + V +AL+DMYS+CG V 
Sbjct: 262 RAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVP 321

Query: 320 IADSMFRSLCRKN-LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           +A  +F  +  K  +V+W +MI G A +G   + + LF ++ T   + PD ++F+++L A
Sbjct: 322 MARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEM-TAYGVTPDGISFISLLHA 380

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH  +  ++  +YF  M + Y I+P +EH   M+ L G+ G++ +A   I ++      
Sbjct: 381 CSHAGL-IEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTA 439

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW-DVASVMRNF 497
           +VWR LL A  +  ++++A      + +L+ ++    V+L N Y + G W DVAS+ ++ 
Sbjct: 440 IVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSM 499

Query: 498 MRERGLRKEAGCSWIEV 514
           + +R ++K    S +EV
Sbjct: 500 IVQR-IKKTTAWSLVEV 515



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  L  +L A S  G   + + LH ++ K+G+   V V+ AL+  Y +  ++  A  +
Sbjct: 267 PNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLV 326

Query: 61  FVEIPQPS-VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           F  + +   +VSW S+I+G    G+  +A+ LF E+    +  D  SF S L AC   G 
Sbjct: 327 FEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGL 386

Query: 120 LQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
           ++ G    S++ + Y +E  +    C++D+YG+ G ++ A     +M I    I W +++
Sbjct: 387 IEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLL 446

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVI---NGIAQFGDIEDAIMILSSM 227
            A + +GN+ELA     RL   D  +  +++   N  A  G  +D   I  SM
Sbjct: 447 GACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSM 499


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  247 bits (631), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 151/525 (28%), Positives = 261/525 (49%), Gaps = 35/525 (6%)

Query: 24  QLHCYILKSGFLSNVFVSTALM-GFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q+H  ++ +  +S+ F ++ L+     K  ++  A  +F +I QP+    N+++  Y +S
Sbjct: 29  QIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTES 88

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
               +AL  + E+ R  +  D Y++   L ACG +  L  G  +  + VK      V + 
Sbjct: 89  STPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVV 148

Query: 143 NCLIDMYGKCGS-------------------------------VEDAIGVFGEMIDKDII 171
           N LI MY +CG                                +E+A  +F EM ++D++
Sbjct: 149 NGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVV 208

Query: 172 SWNSVIAASARN-GNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSP 230
           SW+ +I    +  G +  A  F   +P  D +S+N +I+G A+ G++E A  I   M   
Sbjct: 209 SWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQK 268

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
           N  SW+ ++ GY       EAL+LF +M  + +  D  +    +S  + L AL  G  IH
Sbjct: 269 NVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIH 328

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
             + +  +   IVV +AL+DMY KCG  + A  +F S+  +N+V+WN MI G   NG   
Sbjct: 329 LYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGK 388

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + +E F Q++  R +  D + FL VL ACSH ++  + +   F  M   Y ++P +EH  
Sbjct: 389 EALECFTQMEMER-IPMDDLLFLGVLMACSHANLVTEGL-HIFNQMKGVYRLEPKLEHYG 446

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            ++ L+G+ G++ + Q +I+ +       +W +LL A     ++ +A I    + +L+ D
Sbjct: 447 CLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKAD 506

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
              VYV++ N+Y   G W+    +R  M+ER ++K+ G S IEV+
Sbjct: 507 DSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVD 551



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 2/198 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +   + A S LG     + +H Y+ ++  L ++ V TAL+  Y K  S  +A ++
Sbjct: 303 PDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRI 362

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+ +VVSWN +I G   +G  ++AL  F ++E   I  D   F   L AC     +
Sbjct: 363 FNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLV 422

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G+ I +++   Y LE  +    CL+D+ G+ G ++    +   M +  +   W S++ 
Sbjct: 423 TEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLL 482

Query: 179 ASARNGNLELAFGFLHRL 196
           A   + N+ LA   + RL
Sbjct: 483 ACRIHQNVTLAEIVVERL 500


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 151/536 (28%), Positives = 272/536 (50%), Gaps = 43/536 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKI--NSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           QQ+H ++LK+  L +  ++ A++     +  +++  A  +F  I +P   ++N +I G  
Sbjct: 38  QQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLA 97

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
                  AL LF ++    +  D ++F+S L AC ++ +L+ G  +H+ I+K   +    
Sbjct: 98  FKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEF 157

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-----------NLELA 189
           + N LI MY  CG +  A  VF  M ++ I++WNS+++   +NG            LEL 
Sbjct: 158 VENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELR 217

Query: 190 FGF-----------LHRLPN-----------------PDTISYNEVINGIAQFGDIEDAI 221
             F             RL N                  +      +I+  A+ G ++ A 
Sbjct: 218 IEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTAR 277

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   M   +  +W+++++GY   +R  EAL+LF EMQ  +V  +E T  ++L   A L 
Sbjct: 278 KLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLG 337

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           A   G  +H  + K+ +  ++ + + L+D Y+KCG ++ +  +F+ +  KN+ TW A+I 
Sbjct: 338 AYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQ 397

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G A NG+    +E F  +    D++P+ VTF+ VL+ACSH  +  D+    F SM +D+ 
Sbjct: 398 GLANNGEGKMALEFFSSM-LENDVKPNDVTFIGVLSACSHACL-VDQGRHLFNSMRRDFD 455

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I+P +EH   M+ ++G+ G +  A + I  + F    VVWR LL++  A  ++++A  S 
Sbjct: 456 IEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSL 515

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
             + +LE      Y++L N Y   G  + A  +R+ ++E+ ++K  GCS IE++ V
Sbjct: 516 EHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGV 571



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 188/419 (44%), Gaps = 68/419 (16%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +++    +L+A S +      +Q+H  ILKSGF SN FV   L+  Y     +  A  +F
Sbjct: 120 DKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVF 179

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +P+ S+V+WNS++SGY ++G + + + LF ++    I  D  +  S L ACG+L +L+
Sbjct: 180 DGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLE 239

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
           +G  I   IV   L R   +   LIDMY KCG V+ A  +F EM  +D+++W+++I+  A
Sbjct: 240 IGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYA 299

Query: 182 RNGNLELAFGFLHRL------PNPDTI-----------SY-------------------- 204
           +    + A    H +      PN  T+           +Y                    
Sbjct: 300 QADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVT 359

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
              ++I+  A+ G I+ ++ +   M   N  +W +++ G  N      AL  F  M   D
Sbjct: 360 LGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLEND 419

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG------------LDASIVVASALLD 310
           V  ++ TF  +LS  +           H+C++ QG            ++  I     ++D
Sbjct: 420 VKPNDVTFIGVLSACS-----------HACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVD 468

Query: 311 MYSKCGQVEIADSMFRSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQ-LKTVRDLQP 367
           +  + G +E A     ++    N V W  ++     +    K IE+ E+ L+ +  L+P
Sbjct: 469 ILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAH----KNIEMAEKSLEHITRLEP 523



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 110/230 (47%), Gaps = 5/230 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  +  +L + + LG     + +H YI K      V + T L+ FY K   +  + ++
Sbjct: 321 PNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEV 380

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+   +V +W +LI G   +G+ + AL  F  +  +++  +  +F   L+AC     +
Sbjct: 381 FKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLV 440

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G  + + + + + +E  +    C++D+ G+ G +E+A      M    + + W +++A
Sbjct: 441 DQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLA 500

Query: 179 ASARNGNLELA---FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILS 225
           +   + N+E+A      + RL    +  Y  + N  A  G +EDAI + S
Sbjct: 501 SCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRS 550


>gi|449503129|ref|XP_004161848.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 769

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 149/533 (27%), Positives = 268/533 (50%), Gaps = 53/533 (9%)

Query: 25  LHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           +H   LK GFL  ++F    ++ FY K   L+   ++F E+P+ +VVSW+++I+G+VQ G
Sbjct: 237 IHAKFLK-GFLPFSLFFHNHVLNFYVKCGRLSYGLQLFDEMPERNVVSWSAIIAGFVQHG 295

Query: 84  KYRKALNLFVELE-RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           +  +AL+LF  +     I  + ++  SAL AC     L     I++ IV+      V + 
Sbjct: 296 RPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLTQRLICSYQIYAFIVRLGYGSNVFLM 355

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF----GFLHRLP- 197
           N  +    +   + +A+ VF   + KD +SWN+++A     G L+LA+     F  R+  
Sbjct: 356 NAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMMA-----GYLQLAYFELPKFWRRMNL 410

Query: 198 ---NPDTISYNEVINGIAQFGDIE-----------------------------------D 219
               PD  ++  ++ G+A   +                                     D
Sbjct: 411 ESVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLD 470

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
                  M S +  SW  +  G +      +AL +  EM++  V ++++T +T L+  A 
Sbjct: 471 GFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALKVIYEMKNVGVRLNKFTLATALNSCAN 530

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
           L+++  G   H   IK G D  + V +ALLDMY+KCG +  A+ +FRS+  +++V+W  M
Sbjct: 531 LASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTM 590

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKD 399
           I G+A NG   + +++F++++   + +P+ +TF+ VL ACS      D+  +YF SM+ D
Sbjct: 591 IMGFAHNGQTKEALQIFDEMRK-GEAEPNHITFICVLNACSQGGF-IDEAWKYFSSMSAD 648

Query: 400 YGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARI 459
           +GI P+ +H   M+ L+G+ G +  A+ +I ++ F    +VW+ LL A     D++  + 
Sbjct: 649 HGIAPSEDHYVCMVNLLGRAGCIKEAEDLILQMPFQPGSLVWQTLLGACLVHGDIETGKR 708

Query: 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           +A   + L+ +    Y++L N++    NWD   ++R  M  R ++K  G SW+
Sbjct: 709 AAEHALNLDRNDPSTYILLSNMFAGGDNWDSVGILRELMETRDVKKVPGSSWM 761



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 115/233 (49%), Gaps = 4/233 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    +L   + L       Q+H  ++KSG+ +++ V  +L   Y K   L D  K 
Sbjct: 415 PDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLDGFKA 474

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+    V SW  + +G +Q G+  KAL +  E++   +  + ++  +AL +C  L S+
Sbjct: 475 FDEMSSSDVCSWTQMAAGCLQCGEPMKALKVIYEMKNVGVRLNKFTLATALNSCANLASI 534

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G   H   +K   +  V + N L+DMY KCG +  A  VF  M ++ ++SW ++I   
Sbjct: 535 EEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGF 594

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           A NG  + A      +      P+ I++  V+N  +Q G I++A    SSM +
Sbjct: 595 AHNGQTKEALQIFDEMRKGEAEPNHITFICVLNACSQGGFIDEAWKYFSSMSA 647



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 132/316 (41%), Gaps = 42/316 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQ-QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           PNE+ L   L A S L     C  Q++ +I++ G+ SNVF+  A +    +   L +A +
Sbjct: 315 PNEFTLVSALHACS-LTQRLICSYQIYAFIVRLGYGSNVFLMNAFLTALIRHEKLLEALE 373

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F        VSWN++++GY+Q   Y +    +  +    +  D ++F S L     L  
Sbjct: 374 VFESCLSKDTVSWNAMMAGYLQLA-YFELPKFWRRMNLESVKPDNFTFASILTGLAALSE 432

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            +LG+ +H ++VK      + + N L DMY K   + D    F EM   D+ SW  + A 
Sbjct: 433 FRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAG 492

Query: 180 SARNGNLELAFGFLHRLPN---------------------------------------PD 200
             + G    A   ++ + N                                        D
Sbjct: 493 CLQCGEPMKALKVIYEMKNVGVRLNKFTLATALNSCANLASIEEGKKFHGLRIKLGTDVD 552

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +++  A+ G +  A ++  SM   +  SW +++ G+ +  +  EAL +F EM+ 
Sbjct: 553 VCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRK 612

Query: 261 KDVPMDEYTFSTMLSG 276
            +   +  TF  +L+ 
Sbjct: 613 GEAEPNHITFICVLNA 628



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 144/315 (45%), Gaps = 42/315 (13%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
           + S L  C      + G AIH+K +K  L   +   N +++ Y KCG +   + +F EM 
Sbjct: 218 YVSFLQRCVLTSDSRHGSAIHAKFLKGFLPFSLFFHNHVLNFYVKCGRLSYGLQLFDEMP 277

Query: 167 DKDIISWNSVIAASARNGNLELA---FGFLH----RLPNPDTI---------------SY 204
           +++++SW+++IA   ++G    A   FG +H     +PN  T+               SY
Sbjct: 278 ERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLTQRLICSY 337

Query: 205 ------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246
                             N  +  + +   + +A+ +  S  S ++ SWN+++ GY+   
Sbjct: 338 QIYAFIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMMAGYLQLA 397

Query: 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
              E    +  M  + V  D +TF+++L+G+A LS    G+ +H  ++K G    I V +
Sbjct: 398 YF-ELPKFWRRMNLESVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGNDICVGN 456

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
           +L DMY K  ++      F  +   ++ +W  M  G  + G+  K +++  ++K V  ++
Sbjct: 457 SLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALKVIYEMKNV-GVR 515

Query: 367 PDSVTFLNVLAACSH 381
            +  T    L +C++
Sbjct: 516 LNKFTLATALNSCAN 530



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 54/97 (55%)

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G  IH+  +K  L  S+   + +L+ Y KCG++     +F  +  +N+V+W+A+I G+ +
Sbjct: 234 GSAIHAKFLKGFLPFSLFFHNHVLNFYVKCGRLSYGLQLFDEMPERNVVSWSAIIAGFVQ 293

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
           +G   + + LF ++     + P+  T ++ L ACS T
Sbjct: 294 HGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLT 330


>gi|449464466|ref|XP_004149950.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101216349
            [Cucumis sativus]
          Length = 1830

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 161/524 (30%), Positives = 269/524 (51%), Gaps = 18/524 (3%)

Query: 9    LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
            +L+A S+L      +++HC I+K G   + FV T L+  Y K   +  +  +F EI   +
Sbjct: 1224 ILKACSELREIVEGRKVHCQIVKVGG-PDSFVMTGLIDMYGKCGQVECSSAVFEEIMDKN 1282

Query: 69   VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
            VVSW S+I+GYVQ+    + L LF  +  + + ++ ++  S + A  +L +L  G  +H 
Sbjct: 1283 VVSWTSMIAGYVQNNCAEEGLVLFNRMRDALVESNPFTLGSIINAFTKLRALHQGKWVHG 1342

Query: 129  KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA----ASARNG 184
              +K   E    +A   +DMY KCG   DA  ++ E+   D++SW  +I     A   N 
Sbjct: 1343 YAIKNIAELSSFLATTFLDMYVKCGQTRDARMIYDELPTIDLVSWTVMIVGYTQARQPND 1402

Query: 185  NLELAFGFLHR--LPNPDTIS--------YNEVINGIAQFGDIEDAIMILSSMPSPNSSS 234
             L L    +    LPN   +          N +I+  A+   I DA  I   +   +  +
Sbjct: 1403 GLRLFADEIRSDLLPNSALLQVFFQRVRFLNALIDMYAKCHTISDAYAIFHGVLEKDVIT 1462

Query: 235  WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
            WNS+++GY       +AL LF +M+S  +  D  T  + LS  A L A+  G  +H+  +
Sbjct: 1463 WNSMISGYAQNGSAYDALRLFNQMRSYSLAPDAITLVSTLSASATLGAIQVGSSLHAYSV 1522

Query: 295  KQGLDAS-IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
            K GL +S + + +ALL+ Y+KCG    A  +F S+  KN++TW+AMI GY   GD +  +
Sbjct: 1523 KGGLFSSNLYIGTALLNFYAKCGDARSARMVFDSMGVKNIITWSAMIGGYGVQGDGSGSL 1582

Query: 354  ELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMI 413
             +F  +    DL+P+ V F  VL+ACS++ +  ++   YF+SM +DY   P+++H   M+
Sbjct: 1583 SIFSNM-LKEDLKPNEVIFTTVLSACSYSGM-VEEGGRYFKSMIQDYNFVPSMKHYACMV 1640

Query: 414  RLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY 473
             L+ + G++  A   I+++       ++ A L   G  S  D+  +   E+++L  +   
Sbjct: 1641 DLLARSGKLDEALDFIKKMPVQRDVSLYGAFLHGCGLYSRFDLGEVVVREMLQLHRNEAC 1700

Query: 474  VYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
             YV++ NLY S G W   + +R+ M +RGL K  G S +E   V
Sbjct: 1701 YYVLVSNLYASDGKWGQVNEVRDLMLQRGLNKVPGYSLVETNAV 1744



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 174/396 (43%), Gaps = 66/396 (16%)

Query: 24   QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
            + H  ++  G + N+   T L+G Y  +  +  A  +F ++P P   +W  +I  Y  + 
Sbjct: 1138 KFHGLLIVHGLIGNLLCDTKLVGVYGALGDVRSARMVFDQMPNPDFYAWKVMIRWYFLND 1197

Query: 84   KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
             +   +  +  +  S    D   F+  L AC +L  +  G  +H +IVK       V+  
Sbjct: 1198 LFVDVIPFYNRMRMSFRECDNIIFSIILKACSELREIVEGRKVHCQIVKVGGPDSFVMTG 1257

Query: 144  CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------P 197
             LIDMYGKCG VE +  VF E++DK+++SW S+IA   +N   E      +R+       
Sbjct: 1258 -LIDMYGKCGQVECSSAVFEEIMDKNVVSWTSMIAGYVQNNCAEEGLVLFNRMRDALVES 1316

Query: 198  NPDTIS------------------YNEVINGIAQF---------------GDIEDAIMIL 224
            NP T+                   +   I  IA+                G   DA MI 
Sbjct: 1317 NPFTLGSIINAFTKLRALHQGKWVHGYAIKNIAELSSFLATTFLDMYVKCGQTRDARMIY 1376

Query: 225  SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
              +P+ +  SW  ++ GY    +  + L LF +    D                      
Sbjct: 1377 DELPTIDLVSWTVMIVGYTQARQPNDGLRLFADEIRSD---------------------- 1414

Query: 285  WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
               L+ +  + Q     +   +AL+DMY+KC  +  A ++F  +  K+++TWN+MI+GYA
Sbjct: 1415 ---LLPNSALLQVFFQRVRFLNALIDMYAKCHTISDAYAIFHGVLEKDVITWNSMISGYA 1471

Query: 345  RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            +NG     + LF Q+++   L PD++T ++ L+A +
Sbjct: 1472 QNGSAYDALRLFNQMRSY-SLAPDAITLVSTLSASA 1506



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 88/173 (50%), Gaps = 3/173 (1%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSG-FLSNVFVSTALMGFYRKINSLADAHK 59
            P+   L   L AS+ LG       LH Y +K G F SN+++ TAL+ FY K      A  
Sbjct: 1493 PDAITLVSTLSASATLGAIQVGSSLHAYSVKGGLFSSNLYIGTALLNFYAKCGDARSARM 1552

Query: 60   MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
            +F  +   ++++W+++I GY   G    +L++F  + + ++  +   FT+ L+AC   G 
Sbjct: 1553 VFDSMGVKNIITWSAMIGGYGVQGDGSGSLSIFSNMLKEDLKPNEVIFTTVLSACSYSGM 1612

Query: 120  LQL-GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDI 170
            ++  G    S I  Y+    +    C++D+  + G +++A+    +M + +D+
Sbjct: 1613 VEEGGRYFKSMIQDYNFVPSMKHYACMVDLLARSGKLDEALDFIKKMPVQRDV 1665


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 156/555 (28%), Positives = 266/555 (47%), Gaps = 42/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+ +  LL+  + L         H YI+K GF +   V  AL+ FY K N + DA  +
Sbjct: 415 PDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLV 474

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+   +SWNS+ISG   +G   +A+ LF+ +       D+ +  S L AC Q    
Sbjct: 475 FNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYW 534

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H   VK  L     +AN L+DMY  C   +    +F  M  K+++SW ++I + 
Sbjct: 535 FAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSY 594

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIA------------------------ 212
            R G  +   G L  +      PD  +    ++  A                        
Sbjct: 595 MRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLL 654

Query: 213 -----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                      +  ++E+A +I   + + +  SWN+++ GY   N   E+  LF +M  +
Sbjct: 655 PVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ 714

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
             P +  T + +L   A +S+L  G  IH+  +++G       ++AL+DMY KCG + +A
Sbjct: 715 FRP-NAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVA 773

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  L +KNL++W  MI GY  +G     I LFEQ++    ++PD+ +F  +L AC H
Sbjct: 774 RVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRG-SGIEPDAASFSAILYACCH 832

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           + +  +    +F++M K+Y I+P ++H   ++ L+ + G++  A   I  +       +W
Sbjct: 833 SGLAAEG-RRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIW 891

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            +LL       ++ +A   A +V KLE ++   YV+L N+Y     W+    ++N +  R
Sbjct: 892 VSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGR 951

Query: 502 GLRKEAGCSWIEVEN 516
           GLR+  G SWIEV +
Sbjct: 952 GLRENTGYSWIEVRS 966



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 181/387 (46%), Gaps = 53/387 (13%)

Query: 48  YRKINSLADAHKMFVEIPQPS--VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAY 105
           Y K   L +A  +F  +P  +  V  W SL+S Y ++G +++A++LF +++   +  DA+
Sbjct: 146 YLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAH 205

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
           + +  L     LGSL  G  IH  + K  L +   +AN LI +Y +CG +EDA  VF  M
Sbjct: 206 AVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSM 265

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHR----------------LPNPDTISY----- 204
             +D ISWNS+I     NG    A     +                LP    + Y     
Sbjct: 266 HPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGK 325

Query: 205 ---------------NEVINGI-------------AQFGDIEDAIMILSSMPSP-NSSSW 235
                          + V +GI              + GD+  A  +  +M S  N   W
Sbjct: 326 AVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVW 385

Query: 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
           N I+ GY       E+L LF +M    +  DE+  S +L  I  LS    G++ H  ++K
Sbjct: 386 NLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVK 445

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
            G  A   V +AL+  Y+K   +  A  +F  + R++ ++WN++I+G + NG  ++ IEL
Sbjct: 446 LGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIEL 505

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACSHT 382
           F ++ T +  + DSVT L+VL AC+ +
Sbjct: 506 FIRMWT-QGQELDSVTLLSVLPACAQS 531



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 117/428 (27%), Positives = 195/428 (45%), Gaps = 51/428 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + +  +L+  S LG  T  + +H  + K G      V+ AL+  Y +   + DA ++
Sbjct: 202 PDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARV 261

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     +SWNS+I G   +G +  A++LF ++        + +  S L AC  LG  
Sbjct: 262 FDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYG 321

Query: 121 QLGMAIHSKIVKYSLERGV----------VIANCLIDMYGKCGSVEDAIGVFGEMIDK-D 169
            +G A+H   VK  L  G+           + + L+ MY KCG +  A  VF  M  K +
Sbjct: 322 LIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGN 381

Query: 170 IISWNSVIAASARNGNLELAFGF---LHRL---PNPDTIS-------------------- 203
           +  WN ++   A+ G  E +      +H L   P+   IS                    
Sbjct: 382 VHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHG 441

Query: 204 -------------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE 250
                         N +I+  A+   I DA+++ + MP  ++ SWNS+++G  +     E
Sbjct: 442 YIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSE 501

Query: 251 ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLD 310
           A+ LF  M ++   +D  T  ++L   A       G ++H   +K GL     +A+ALLD
Sbjct: 502 AIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLD 561

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370
           MYS C   +  + +FRS+ +KN+V+W AMIT Y R G   KV  L +++  +  ++PD  
Sbjct: 562 MYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEM-VLDGIRPDVF 620

Query: 371 TFLNVLAA 378
              + L A
Sbjct: 621 AVTSALHA 628



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 187/424 (44%), Gaps = 52/424 (12%)

Query: 5   VLFHLLRASSDLGWDTYCQQLHCYILKSGFL----------SNVFVSTALMGFYRKINSL 54
            +  +L A + LG+    + +H Y +KSG L           +  + + L+  Y K   +
Sbjct: 307 TVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDM 366

Query: 55  ADAHKMFVEIP-QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
           A A ++F  +  + +V  WN ++ GY + G++ ++L+LFV++    I  D ++ +  L  
Sbjct: 367 ASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKC 426

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISW 173
              L   + G+  H  IVK        + N LI  Y K   + DA+ VF  M  +D ISW
Sbjct: 427 ITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISW 486

Query: 174 NSVIAASARNG----NLELAFGFLHRLPNPDTISYNEVINGIAQ---------------- 213
           NSVI+  + NG     +EL      +    D+++   V+   AQ                
Sbjct: 487 NSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVK 546

Query: 214 -------------------FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
                                D +    I  SM   N  SW +++T Y+      +   L
Sbjct: 547 TGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGL 606

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
             EM    +  D +  ++ L   AG  +L  G  +H   I+ G++  + VA+AL++MY K
Sbjct: 607 LQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVK 666

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           C  VE A  +F  +  K++++WN +I GY+RN    +   LF  +  +   +P++VT   
Sbjct: 667 CRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDM--LLQFRPNAVTMTC 724

Query: 375 VLAA 378
           +L A
Sbjct: 725 ILPA 728


>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
 gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
          Length = 701

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 147/472 (31%), Positives = 249/472 (52%), Gaps = 10/472 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV     L+  Y +   ++DA  +F  +P+ +VV+ N ++ GYV+  +  +A  LF E+ 
Sbjct: 235 NVVSWVTLLNGYCRAGRISDARDLFDRMPERNVVACNVMLDGYVRLSRLEEACKLFDEMP 294

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
                 ++ S+T+ ++   + G LQ    +  K+        V     L+  Y +   V 
Sbjct: 295 GK----NSISWTTIISGLARAGKLQEAKDLLDKMSFNC----VAAKTALMHGYLQRNMVN 346

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           DA  +F  M   D + WN++I+   + G LE A     R+PN DT+S+N +I G AQ G 
Sbjct: 347 DARQIFDGMEVHDTVCWNTMISGYVQRGMLEEAMLLFQRMPNKDTVSWNTMIAGYAQGGQ 406

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           +  AI I   M   N+ SWNS+++G+V      +A H F  M+      D  T+++ L  
Sbjct: 407 MRKAIGIFRRMSRKNTVSWNSVISGFVQNGLFVDAFHHFMLMRRGTNRADWSTYASCLRA 466

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            A L+AL  G  +HS +++ G    +   +AL+  Y+KCG++  A  +F  +  K++V+W
Sbjct: 467 CANLAALHVGRQLHSLLVRSGHINDLFARNALISTYAKCGRMLEAKQIFDEMVGKDIVSW 526

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           NA++ GYA NG  T+ I +F +++    ++PD VTF+ +L+ACS   +  D+   +F SM
Sbjct: 527 NALVDGYASNGQGTEAISVFREME-ANGVRPDEVTFVGILSACSRAGL-IDEGLGFFNSM 584

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
           T++Y +KP  EH   M  L+G+ G++  A  +++ +       VW ALL A     + ++
Sbjct: 585 TEEYSLKPVAEHYACMADLLGRAGKLNEAFELVQGMQIQPNAGVWGALLGACQMYKNHEL 644

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAG 508
           AR++A ++ +LE      YV+L N+    G WD A   R  ++E+G  K  G
Sbjct: 645 ARLAAEKLSELEPCRASNYVLLSNISAEAGKWDEAEKARASIKEKGANKPPG 696



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 169/388 (43%), Gaps = 61/388 (15%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           N     +++    +   + +A  +F  +P  + VSWN++I+     G+   A  LF  + 
Sbjct: 48  NTVTYNSMLSALARHGRIDEARALFDGMPSRNAVSWNAMIAALSDHGRVADARGLFDRMP 107

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
                 D +S+T  ++   + G L+L   +  ++     ++     N +I  Y K G  +
Sbjct: 108 SR----DDFSWTVMVSCYARAGELELARDVLDRMPG---DKCTACYNAMISGYAKNGRFD 160

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           DA+ +  EM   D+ SWNS +A   ++G +  A  F   +   D +S+N ++ G  + GD
Sbjct: 161 DAVKLLREMPAPDLFSWNSALAGLTQSGQMVRAVQFFDEMVEKDMVSWNLMLEGFVRAGD 220

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP-----MDEY--- 268
           ++ A      + SPN  SW ++L GY    R+ +A  LF  M  ++V      +D Y   
Sbjct: 221 LDAAASFFGRIESPNVVSWVTLLNGYCRAGRISDARDLFDRMPERNVVACNVMLDGYVRL 280

Query: 269 -------------------TFSTMLSG---------------------IAGLSALTWGML 288
                              +++T++SG                     +A  +AL  G L
Sbjct: 281 SRLEEACKLFDEMPGKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYL 340

Query: 289 IHSCV-----IKQGLDASIVVA-SALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
             + V     I  G++    V  + ++  Y + G +E A  +F+ +  K+ V+WN MI G
Sbjct: 341 QRNMVNDARQIFDGMEVHDTVCWNTMISGYVQRGMLEEAMLLFQRMPNKDTVSWNTMIAG 400

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSV 370
           YA+ G + K I +F ++     +  +SV
Sbjct: 401 YAQGGQMRKAIGIFRRMSRKNTVSWNSV 428



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 125/292 (42%), Gaps = 69/292 (23%)

Query: 111 LAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI 170
           LA  GQL + +       ++      R  V  N ++    + G +++A  +F  M  ++ 
Sbjct: 28  LARSGQLAAAR-------RLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMPSRNA 80

Query: 171 ISWNSVIAA-------------------------------SARNGNLELAFGFLHRLPNP 199
           +SWN++IAA                                AR G LELA   L R+P  
Sbjct: 81  VSWNAMIAALSDHGRVADARGLFDRMPSRDDFSWTVMVSCYARAGELELARDVLDRMPGD 140

Query: 200 D-TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
             T  YN +I+G A+ G  +DA+ +L  MP+P+  SWNS L G     ++  A+  F EM
Sbjct: 141 KCTACYNAMISGYAKNGRFDDAVKLLREMPAPDLFSWNSALAGLTQSGQMVRAVQFFDEM 200

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS-----------IVVASA 307
             KD+                   ++W +++   V    LDA+           +V    
Sbjct: 201 VEKDM-------------------VSWNLMLEGFVRAGDLDAAASFFGRIESPNVVSWVT 241

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           LL+ Y + G++  A  +F  +  +N+V  N M+ GY R   L +  +LF+++
Sbjct: 242 LLNGYCRAGRISDARDLFDRMPERNVVACNVMLDGYVRLSRLEEACKLFDEM 293



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 99/182 (54%), Gaps = 2/182 (1%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV 69
           LRA ++L      +QLH  +++SG ++++F   AL+  Y K   + +A ++F E+    +
Sbjct: 464 LRACANLAALHVGRQLHSLLVRSGHINDLFARNALISTYAKCGRMLEAKQIFDEMVGKDI 523

Query: 70  VSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129
           VSWN+L+ GY  +G+  +A+++F E+E + +  D  +F   L+AC + G +  G+   + 
Sbjct: 524 VSWNALVDGYASNGQGTEAISVFREMEANGVRPDEVTFVGILSACSRAGLIDEGLGFFNS 583

Query: 130 IV-KYSLERGVVIANCLIDMYGKCGSVEDAIG-VFGEMIDKDIISWNSVIAASARNGNLE 187
           +  +YSL+       C+ D+ G+ G + +A   V G  I  +   W +++ A     N E
Sbjct: 584 MTEEYSLKPVAEHYACMADLLGRAGKLNEAFELVQGMQIQPNAGVWGALLGACQMYKNHE 643

Query: 188 LA 189
           LA
Sbjct: 644 LA 645



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 97/186 (52%), Gaps = 7/186 (3%)

Query: 174 NSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS 233
           N  +   AR+G L  A      +P  +T++YN +++ +A+ G I++A  +   MPS N+ 
Sbjct: 22  NQELTRLARSGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMPSRNAV 81

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           SWN+++    +  RV +A  LF  M S+    D+++++ M+S  A    L    L    +
Sbjct: 82  SWNAMIAALSDHGRVADARGLFDRMPSR----DDFSWTVMVSCYARAGELE---LARDVL 134

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
            +   D      +A++  Y+K G+ + A  + R +   +L +WN+ + G  ++G + + +
Sbjct: 135 DRMPGDKCTACYNAMISGYAKNGRFDDAVKLLREMPAPDLFSWNSALAGLTQSGQMVRAV 194

Query: 354 ELFEQL 359
           + F+++
Sbjct: 195 QFFDEM 200



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 119/254 (46%), Gaps = 42/254 (16%)

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN 198
           V  +N  +    + G +  A  +F  M  ++ +++NS+++A AR+G ++ A      +P+
Sbjct: 18  VFRSNQELTRLARSGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMPS 77

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSW----------------------- 235
            + +S+N +I  ++  G + DA  +   MPS +  SW                       
Sbjct: 78  RNAVSWNAMIAALSDHGRVADARGLFDRMPSRDDFSWTVMVSCYARAGELELARDVLDRM 137

Query: 236 ---------NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
                    N++++GY    R  +A+ L  EM + D+    +++++ L+G+        G
Sbjct: 138 PGDKCTACYNAMISGYAKNGRFDDAVKLLREMPAPDL----FSWNSALAGLT-----QSG 188

Query: 287 MLIHSC-VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
            ++ +     + ++  +V  + +L+ + + G ++ A S F  +   N+V+W  ++ GY R
Sbjct: 189 QMVRAVQFFDEMVEKDMVSWNLMLEGFVRAGDLDAAASFFGRIESPNVVSWVTLLNGYCR 248

Query: 346 NGDLTKVIELFEQL 359
            G ++   +LF+++
Sbjct: 249 AGRISDARDLFDRM 262


>gi|449453244|ref|XP_004144368.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Cucumis sativus]
          Length = 735

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 149/537 (27%), Positives = 278/537 (51%), Gaps = 49/537 (9%)

Query: 15  DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF--VEIPQPSVVSW 72
           DLG     +Q+H  ++K+G+L    V  AL+  Y  I +L DA+++F   E      +++
Sbjct: 208 DLG-----RQVHSSVIKAGYLRKTSVVNALITMYFSIENLEDAYEVFEGTESEVRDQITY 262

Query: 73  NSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132
           N +I G V   +  +AL +F +++R+ +     +F S +++C     +Q+   +HS+ +K
Sbjct: 263 NVMIDGLVCVRRNEEALIMFKDMKRACLSPTELTFVSIMSSCS---IIQVAQQVHSQAIK 319

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE----L 188
              E   ++ N  I MY  CG  + A  VF  +I+KD+ISWN++I++  + GN      L
Sbjct: 320 LGFESFTLVGNSTITMYTSCGEFQAANAVFQMLIEKDLISWNAIISSYVQ-GNFGKSAVL 378

Query: 189 AFGFLHRLP-NPDTISY--------------------------------NEVINGIAQFG 215
           AF  + R    PD  ++                                N +++  A+  
Sbjct: 379 AFLQMQRTGIGPDEFTFGSLLGVSEFIEIVEMVHAYVYKNGLILIIEILNALVSAYAKCR 438

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275
            ++ ++ + S + S N  SWN+++ G++      +AL  F ++    +    +T S +LS
Sbjct: 439 KVKQSLQVFSEINSKNIISWNTVIYGFLLNGLPLQALEHFSKLIMSKLKPSTFTLSIVLS 498

Query: 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335
             A +S L  G  IH  +++ G  +   + + L+ MYSKCG +  +   F  +  +++V+
Sbjct: 499 ICANISTLDIGKQIHGYILRSGNSSETSLCNGLITMYSKCGLLGWSLRTFNVMIERDIVS 558

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFES 395
           WN++I+ YA++G   + ++ F+ ++ +  + PD  TF  +L+ACSH  +  ++  +  + 
Sbjct: 559 WNSIISAYAQHGQGKEAVDCFKAMQDMPSIMPDQATFTTILSACSHAGL-VEEACQILDI 617

Query: 396 MTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLD 455
           M  DY   P+V+    ++ L+G+ G + +A+ +I    +G +  VW AL SA  A  +L 
Sbjct: 618 MLIDYRAVPSVDQLSCIVDLIGRSGYIDQAESVIESAQYGEHTHVWWALFSACAAHENLR 677

Query: 456 VARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512
           + RI A  +++ E D+  VYV+L N+Y S G W+ A+ +R  +++ G  K+ GCSWI
Sbjct: 678 LGRIVARILLEKERDNPSVYVVLSNIYASAGCWEEAANVRELIKKTGSMKQPGCSWI 734



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 113/450 (25%), Positives = 193/450 (42%), Gaps = 74/450 (16%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y L   L   ++     +  QLH Y ++SG      V+  ++  Y KI       + 
Sbjct: 58  PDHYNLSTTLAVCANFRDIAFGSQLHGYAIRSGLKFYPHVANTVLSLYAKIEDFVSLKRG 117

Query: 61  FVEIPQPSVVSW-------------------------------NSLISGYVQSGKYRKAL 89
           F EI +P V SW                               N++I+G  +SG    A+
Sbjct: 118 FQEIEKPDVYSWTTLLSACTKMGHIEYASEMFDIMPKGNVACWNAMITGSAESGLDWVAM 177

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
           N F E+ +  +  D YSF   L+ C +     LG  +HS ++K    R   + N LI MY
Sbjct: 178 NTFYEMHKMGVKPDNYSFACILSLCTKEIE-DLGRQVHSSVIKAGYLRKTSVVNALITMY 236

Query: 150 GKCGSVEDAIGVF--GEMIDKDIISWNSVI---AASARNGNLELAFGFLHR-LPNPDTIS 203
               ++EDA  VF   E   +D I++N +I       RN    + F  + R   +P  ++
Sbjct: 237 FSIENLEDAYEVFEGTESEVRDQITYNVMIDGLVCVRRNEEALIMFKDMKRACLSPTELT 296

Query: 204 Y--------------------------------NEVINGIAQFGDIEDAIMILSSMPSPN 231
           +                                N  I      G+ + A  +   +   +
Sbjct: 297 FVSIMSSCSIIQVAQQVHSQAIKLGFESFTLVGNSTITMYTSCGEFQAANAVFQMLIEKD 356

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             SWN+I++ YV  N    A+  F +MQ   +  DE+TF ++L G++    +    ++H+
Sbjct: 357 LISWNAIISSYVQGNFGKSAVLAFLQMQRTGIGPDEFTFGSLL-GVSEFIEIV--EMVHA 413

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
            V K GL   I + +AL+  Y+KC +V+ +  +F  +  KN+++WN +I G+  NG   +
Sbjct: 414 YVYKNGLILIIEILNALVSAYAKCRKVKQSLQVFSEINSKNIISWNTVIYGFLLNGLPLQ 473

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            +E F +L  +  L+P + T   VL+ C++
Sbjct: 474 ALEHFSKL-IMSKLKPSTFTLSIVLSICAN 502



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 125/232 (53%), Gaps = 8/232 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E+    LL  S  +      + +H Y+ K+G +  + +  AL+  Y K   +  + ++
Sbjct: 390 PDEFTFGSLLGVSEFI---EIVEMVHAYVYKNGLILIIEILNALVSAYAKCRKVKQSLQV 446

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EI   +++SWN++I G++ +G   +AL  F +L  S++    ++ +  L+ C  + +L
Sbjct: 447 FSEINSKNIISWNTVIYGFLLNGLPLQALEHFSKLIMSKLKPSTFTLSIVLSICANISTL 506

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +G  IH  I++        + N LI MY KCG +  ++  F  MI++DI+SWNS+I+A 
Sbjct: 507 DIGKQIHGYILRSGNSSETSLCNGLITMYSKCGLLGWSLRTFNVMIERDIVSWNSIISAY 566

Query: 181 ARNGNLELA---FGFLHRLPN--PDTISYNEVINGIAQFGDIEDAIMILSSM 227
           A++G  + A   F  +  +P+  PD  ++  +++  +  G +E+A  IL  M
Sbjct: 567 AQHGQGKEAVDCFKAMQDMPSIMPDQATFTTILSACSHAGLVEEACQILDIM 618



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/412 (20%), Positives = 176/412 (42%), Gaps = 82/412 (19%)

Query: 49  RKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE---IYADAY 105
           +K+    ++ K   E     ++ +N L++   +S +Y  +L LF ++  S    I  D Y
Sbjct: 2   KKLQHAMNSLKTIAESASQDLLEYNRLLAELKRSSRYIDSLQLFTQIHSSHCFNIKPDHY 61

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV---F 162
           + ++ LA C     +  G  +H   ++  L+    +AN ++ +Y K   +ED + +   F
Sbjct: 62  NLSTTLAVCANFRDIAFGSQLHGYAIRSGLKFYPHVANTVLSLYAK---IEDFVSLKRGF 118

Query: 163 GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFG------- 215
            E+   D+ SW ++++A  + G++E A      +P  +   +N +I G A+ G       
Sbjct: 119 QEIEKPDVYSWTTLLSACTKMGHIEYASEMFDIMPKGNVACWNAMITGSAESGLDWVAMN 178

Query: 216 --------------------------DIED-AIMILSSMPSP----NSSSWNSILTGYVN 244
                                     +IED    + SS+        +S  N+++T Y +
Sbjct: 179 TFYEMHKMGVKPDNYSFACILSLCTKEIEDLGRQVHSSVIKAGYLRKTSVVNALITMYFS 238

Query: 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI--------------------------- 277
              + +A  +F   +S+    D+ T++ M+ G+                           
Sbjct: 239 IENLEDAYEVFEGTESE--VRDQITYNVMIDGLVCVRRNEEALIMFKDMKRACLSPTELT 296

Query: 278 -----AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332
                +  S +     +HS  IK G ++  +V ++ + MY+ CG+ + A+++F+ L  K+
Sbjct: 297 FVSIMSSCSIIQVAQQVHSQAIKLGFESFTLVGNSTITMYTSCGEFQAANAVFQMLIEKD 356

Query: 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
           L++WNA+I+ Y +       +  F Q++    + PD  TF ++L      +I
Sbjct: 357 LISWNAIISSYVQGNFGKSAVLAFLQMQRT-GIGPDEFTFGSLLGVSEFIEI 407


>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 600

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 153/530 (28%), Positives = 265/530 (50%), Gaps = 41/530 (7%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSW--NSLISG 78
           + Q+LH  +LK G   +   ++ L+  Y     L  +  +F   P P   ++  N+L+  
Sbjct: 39  HLQELHAQLLKHGLHLDPVAASKLLSSYALHRRLPASRGVFASFPNPHATTFLPNTLLRA 98

Query: 79  YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
           Y  +   R+A+ +F  +     + D+++++  + A    G   L  A+HS +VK      
Sbjct: 99  YALNALPREAVAVFSAMP----HRDSFTYSFLIKALSSAGVAPL-RAVHSHVVKLGSIED 153

Query: 139 VVIANCLIDMYGKCGSVEDAIGVF-------------------------------GEMID 167
             + N LID Y K G   DA  VF                                EM++
Sbjct: 154 TYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLE 213

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           KD +SWN+++    + G++E AF     +P  + +S++ V++G  + GD+E A +I   M
Sbjct: 214 KDTVSWNTLLDGYTKAGDVEEAFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKM 273

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
           P+ N  +W  +++       V EA  LF +M+   V +D     ++L+  A   +L  G 
Sbjct: 274 PTKNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVAAVVSILAACAESGSLALGK 333

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS-LCRKNLVTWNAMITGYARN 346
            IH  V  + L  S  V +AL+DM+ KCG +  AD +F + +  K+ V+WN +I G+A +
Sbjct: 334 RIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGFAMH 393

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           G   K ++ F Q+K ++   PD+VT +NVL+AC+H     ++   YF +M +DYG+ P +
Sbjct: 394 GHGDKALDFFAQMK-LQGFCPDAVTMINVLSACTHMGF-VEEGRRYFANMERDYGVVPQI 451

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
           EH   MI L+G+ G +  A  +I+ + +    V+W +LLSA     +++ A I+  E+ K
Sbjct: 452 EHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELSK 511

Query: 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           L+  +   Y +L ++Y   G W   +  R  M+  G +K +G SWIE++ 
Sbjct: 512 LQPSNAGNYAVLSSIYAEAGKWSDMAKARMQMKGTGSQKSSGSSWIELDE 561


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 140/508 (27%), Positives = 266/508 (52%), Gaps = 12/508 (2%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKIN-----SLADAHKMFVEIPQPSVVSWNSL 75
           + +Q H  IL++G L + +++ +L+  Y  ++     S   + ++F  + +P+V  WN +
Sbjct: 49  HLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCM 108

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135
           I   +++ +  KA+ L+ E+  +    + Y++ + L AC   G +  G+ +H+ +VK+ L
Sbjct: 109 IKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGL 168

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIAASARNGNLELAFGFLH 194
                I +  I MY   G + +A  +  +   + D + WN++I    R G +E A     
Sbjct: 169 GGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFE 228

Query: 195 RLPNPDTIS-YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
            +P+   IS +N +I+G ++ G +E A      M   +  SW++++ GY+      EAL 
Sbjct: 229 GMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALE 288

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
           +F +MQ + +   ++   ++LS  A L AL  G  IH+   +  +    V+ ++L+DMY+
Sbjct: 289 IFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYA 348

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           KCG++++A  +F  +  K + +WNAMI G A +G     I+LF ++    D+ P+ +TF+
Sbjct: 349 KCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM----DINPNEITFV 404

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
            VL AC+H  +   K    F SM K+YG++P +EH   ++ L+G+ G +  A++++  + 
Sbjct: 405 GVLNACAHGGL-VQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIP 463

Query: 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
                 VW ALL A     ++++       +++LE  +   Y +L N+Y   G W+    
Sbjct: 464 TEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGE 523

Query: 494 MRNFMRERGLRKEAGCSWIEVENVAAHS 521
           +R  M+ERG++   G S I++     H 
Sbjct: 524 VRKLMKERGIKTTPGTSIIDLGRGEVHK 551



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 134/292 (45%), Gaps = 65/292 (22%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFY---------RKI 51
           PN+Y    +L+A SD G      Q+H +++K G   +  + ++ +  Y         R+I
Sbjct: 135 PNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRI 194

Query: 52  -------------NSLAD----------AHKMFVEIPQPSVVS----------------- 71
                        N++ D          A ++F  +P  S++S                 
Sbjct: 195 LDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEV 254

Query: 72  ---------------WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
                          W+++I GY+Q G + +AL +F ++++ +I    +   S L+AC  
Sbjct: 255 AREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACAN 314

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           LG+L  G  IH+   + S++   V+   L+DMY KCG ++ A  VF +M +K++ SWN++
Sbjct: 315 LGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAM 374

Query: 177 IAASARNGNLELAFGFLHRLP-NPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           I   A +G  E A     ++  NP+ I++  V+N  A  G ++  + I +SM
Sbjct: 375 IGGLAMHGRAEDAIDLFSKMDINPNEITFVGVLNACAHGGLVQKGLTIFNSM 426



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 98/191 (51%), Gaps = 5/191 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P ++VL  +L A ++LG     + +H Y  ++    +  + T+L+  Y K   +  A ++
Sbjct: 300 PRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEV 359

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++    V SWN++I G    G+   A++LF ++   +I  +  +F   L AC   G +
Sbjct: 360 FEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLV 416

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNSVIA 178
           Q G+ I + + K Y +E  +    C++D+ G+ G + +A  V   +  +   + W +++ 
Sbjct: 417 QKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLG 476

Query: 179 ASARNGNLELA 189
           A  ++GN+EL 
Sbjct: 477 ACRKHGNVELG 487


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 162/555 (29%), Positives = 273/555 (49%), Gaps = 53/555 (9%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65
           L  L  A  DL      + +H  +   G  S    +TAL   Y K    ADA ++F  +P
Sbjct: 65  LLKLCAARGDLATG---RAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMP 121

Query: 66  QPSVVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGSLQLGM 124
               V+WN+L++GY ++G  R A+ + V ++  E    D+ +  S L AC    +L    
Sbjct: 122 VRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACR 181

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
             H+  ++  LE  V +A  ++D Y KCG +  A  VF  M  K+ +SWN++I   A+NG
Sbjct: 182 EAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNG 241

Query: 185 NLELAFGFLHRLP---------------------------------------NPDTISYN 205
           +   A    +R+                                        + +    N
Sbjct: 242 DSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMN 301

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
            +I   ++   ++ A  +   +      SWN+++ G        +A+ LF  MQ ++V  
Sbjct: 302 ALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKP 361

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           D +T  +++  +A +S       IH   I+  LD  + V +AL+DMY+KCG+V IA  +F
Sbjct: 362 DSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILF 421

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
            S   ++++TWNAMI GY  +G     +ELFE++K++  + P+  TFL+VL+ACSH  + 
Sbjct: 422 NSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSI-GIVPNETTFLSVLSACSHAGL- 479

Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA----QRMIRELGFGSYGVVW 441
            D+  EYF SM +DYG++P +EH  +M+ L+G+ G++  A    Q+M  + G   YG   
Sbjct: 480 VDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYG--- 536

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            A+L A     ++++A  SA ++ +L       +V+L N+Y +   W   + +R  M + 
Sbjct: 537 -AMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKN 595

Query: 502 GLRKEAGCSWIEVEN 516
           GL+K  G S I+++N
Sbjct: 596 GLQKTPGWSIIQLKN 610



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 163/339 (48%), Gaps = 41/339 (12%)

Query: 88  ALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLID 147
           AL  FV +  +       +FTS L  C   G L  G A+H+++    ++   + A  L +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 148 MYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL-----PNPDTI 202
           MY KC    DA  VF  M  +D ++WN+++A  ARNG   +A   + R+       PD+I
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 203 SY-----------------------------------NEVINGIAQFGDIEDAIMILSSM 227
           +                                      +++   + GDI  A ++   M
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
           P+ NS SWN+++ GY       EAL LF  M  + V + + +    L     L  L  GM
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
            +H  +++ GLD+++ V +AL+ MYSKC +V++A  +F  L R+  V+WNAMI G A+NG
Sbjct: 283 RVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNG 342

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
                + LF +++ + +++PDS T ++V+ A +    P 
Sbjct: 343 CSEDAVRLFTRMQ-LENVKPDSFTLVSVIPALADISDPL 380



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 191/419 (45%), Gaps = 46/419 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L A ++      C++ H + ++SG    V V+TA++  Y K   +  A  +
Sbjct: 159 PDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVV 218

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P  + VSWN++I GY Q+G  R+AL LF  +    +     S  +AL ACG+LG L
Sbjct: 219 FDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCL 278

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             GM +H  +V+  L+  V + N LI MY KC  V+ A  VF E+  +  +SWN++I   
Sbjct: 279 DEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGC 338

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGD-------------------- 216
           A+NG  E A     R+      PD+ +   VI  +A   D                    
Sbjct: 339 AQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDV 398

Query: 217 ---------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                          +  A ++ +S    +  +WN+++ GY +      A+ LF EM+S 
Sbjct: 399 YVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSI 458

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEI 320
            +  +E TF ++LS  +    +  G    + + +  GL+  +     ++D+  + G+++ 
Sbjct: 459 GIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDE 518

Query: 321 ADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQ-LKTVRDLQPDSVTFLNVLA 377
           A +  + +     L  + AM+        L K +EL E+  + + +L P    +  +LA
Sbjct: 519 AWAFIQKMPMDPGLSVYGAMLGAC----KLHKNVELAEESAQKIFELGPQEGVYHVLLA 573



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 75/138 (54%)

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           L     R+ +P AL  F  M S   P    TF+++L   A    L  G  +H+ +  +G+
Sbjct: 31  LRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGI 90

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
           D+  + A+AL +MY+KC +   A  +F  +  ++ V WNA++ GYARNG     +E+  +
Sbjct: 91  DSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVR 150

Query: 359 LKTVRDLQPDSVTFLNVL 376
           ++     +PDS+T ++VL
Sbjct: 151 MQEEEGERPDSITLVSVL 168



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 110/240 (45%), Gaps = 17/240 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + L  ++ A +D+      + +H Y ++     +V+V TAL+  Y K   +  A  +
Sbjct: 361 PDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARIL 420

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +  V++WN++I GY   G  + A+ LF E++   I  +  +F S L+AC   G +
Sbjct: 421 FNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLV 480

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G    + + + Y LE G+     ++D+ G+ G +++A     +M +D  +  + +++ 
Sbjct: 481 DEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLG 540

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
           A   + N+ELA                E    I + G  E    +L +    N+S W  +
Sbjct: 541 ACKLHKNVELA---------------EESAQKIFELGPQEGVYHVLLANIYANASMWKDV 585


>gi|449523327|ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like, partial [Cucumis sativus]
          Length = 1090

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 137/459 (29%), Positives = 252/459 (54%), Gaps = 11/459 (2%)

Query: 67  PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI 126
           P V +W S+ISG+ QS +  +AL+ F ++  + +  +  +  SA +AC  L SLQ G+ I
Sbjct: 314 PDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEI 373

Query: 127 HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNL 186
           H   +K  + R  ++ N LIDMY KCG +E A  VF  +++KD+ +WNS+I    + G  
Sbjct: 374 HCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYTWNSMIGGYCQAGYG 433

Query: 187 ELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPSP-----NSSSWNS 237
             A+    RL      P+ +++N +I+G  Q GD + A+ +   M        N++SWNS
Sbjct: 434 GKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIMEKDGGVKRNTASWNS 493

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           ++ GY       +AL +F +MQS +   +  T  ++L   A + A      IH CV+++ 
Sbjct: 494 LIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANVMAEKKIKEIHGCVLRRN 553

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
           L++ + VA++L+D Y+K G ++ + ++F  +  K+++TWN++I GY  +G      +LF+
Sbjct: 554 LESELAVANSLVDTYAKSGNIKYSRTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFD 613

Query: 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417
           Q++ +  ++P+  T  +++ A     +  DK    F S+T+++ I PT++H  +M+ L G
Sbjct: 614 QMRNL-GIRPNRGTLASIIHAYGIAGM-VDKGRHVFSSITEEHQILPTLDHYLAMVDLYG 671

Query: 418 QKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477
           + G +  A   I ++       +W +LL+A     +L++A ++A  + +LE D+  +Y +
Sbjct: 672 RSGRLADAIEFIEDMPIEPDVSIWTSLLTACRFHGNLNLAVLAAKRLHELEPDNHVIYRL 731

Query: 478 LCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           L   Y  +G ++    +R   +E  ++K     W+EV N
Sbjct: 732 LVQAYALYGKFEQTLKVRKLGKESAMKKCTAQCWVEVRN 770



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/463 (29%), Positives = 240/463 (51%), Gaps = 17/463 (3%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLS--NVFVSTALMGFYRKINSLADAHK 59
           N Y+  +LL+   D+G     ++LH   ++ G +   N FV T L+  Y K   L DA K
Sbjct: 81  NTYI--NLLQTCIDVGSIELGRELH---VRMGLVHRVNPFVETKLVSMYAKCGCLKDARK 135

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  + + ++ +W+++I  Y +  ++++ + LF  +    +  DA+ F   L ACG    
Sbjct: 136 VFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKILQACGNCED 195

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+    IHS +++  L   + ++N ++  + KCG +  A   FG M ++D +SWN +IA 
Sbjct: 196 LETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAG 255

Query: 180 SARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPS----PN 231
             + GN + A   L  + N    P  ++YN +I   +Q GD +  I +   M S    P+
Sbjct: 256 YCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCDLVIDLKKKMESVGLAPD 315

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             +W S+++G+   +R+ +AL  F +M    V  +  T ++  S  A L +L  G+ IH 
Sbjct: 316 VYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIHC 375

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
             IK G+    +V ++L+DMYSKCG++E A  +F ++  K++ TWN+MI GY + G   K
Sbjct: 376 FAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYTWNSMIGGYCQAGYGGK 435

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411
             ELF +L+    + P+ VT+  +++ C       D+  + F+ M KD G+K       S
Sbjct: 436 AYELFMRLRE-STVMPNVVTWNAMISGCIQNGDE-DQAMDLFQIMEKDGGVKRNTASWNS 493

Query: 412 MIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDL 454
           +I    Q GE  +A  + R++   ++      +LS   AC+++
Sbjct: 494 LIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANV 536



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 149/313 (47%), Gaps = 22/313 (7%)

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV-- 139
           +G  R+A+     + +        ++ + L  C  +GS++LG  +H   V+  L   V  
Sbjct: 58  NGLLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELH---VRMGLVHRVNP 114

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHR 195
            +   L+ MY KCG ++DA  VF  M ++++ +W+++I A +R       +EL F  +  
Sbjct: 115 FVETKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGD 174

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSW----NSILTGYVNRNRVPEA 251
              PD   + +++       D+E   +I S +     S +    NSILT +V   ++  A
Sbjct: 175 GVLPDAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLA 234

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
              FG M  +    D  +++ M++G            +   +  QG    +V  + ++  
Sbjct: 235 RKFFGNMDER----DGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIAS 290

Query: 312 YSKCGQVEIADSMFRSL----CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           YS+ G  ++   + + +       ++ TW +MI+G++++  +++ ++ F+++  +  ++P
Sbjct: 291 YSQLGDCDLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKM-ILAGVEP 349

Query: 368 DSVTFLNVLAACS 380
           +++T  +  +AC+
Sbjct: 350 NTITIASATSACA 362



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 127/275 (46%), Gaps = 22/275 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  +L A +++  +   +++H  +L+    S + V+ +L+  Y K  ++  +  +
Sbjct: 521 PNSVTILSILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTV 580

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    +++WNS+I+GY+  G    A  LF ++    I  +  +  S + A G  G +
Sbjct: 581 FNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIAGMV 640

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G  + S I  ++ +   +     ++D+YG+ G + DAI    +M I+ D+  W S++ 
Sbjct: 641 DKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSGRLADAIEFIEDMPIEPDVSIWTSLLT 700

Query: 179 ASARNGNLELAF---GFLHRLPNPDTISYNEVINGIAQFGDIEDAIMIL-----SSMPSP 230
           A   +GNL LA      LH L   + + Y  ++   A +G  E  + +      S+M   
Sbjct: 701 ACRFHGNLNLAVLAAKRLHELEPDNHVIYRLLVQAYALYGKFEQTLKVRKLGKESAMKKC 760

Query: 231 NSSSWNSILTGYVNRNRVPEALHLF--GEMQSKDV 263
            +  W  +      RN+V    HLF  G+    DV
Sbjct: 761 TAQCWVEV------RNKV----HLFVTGDQSKLDV 785


>gi|48475127|gb|AAT44196.1| hypothetical protein, contains pentatricopeptide (PPR) repeat
           [Oryza sativa Japonica Group]
 gi|51854327|gb|AAU10708.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 634

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 163/557 (29%), Positives = 279/557 (50%), Gaps = 49/557 (8%)

Query: 5   VLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEI 64
           ++F    A++D  +  +   LH + ++S  +S+VFV+TAL   Y K   L  A K+F E+
Sbjct: 24  LVFKSCAAAADARFLPHAASLHAFAVRSSAVSSVFVATALADVYAKAGCLGLALKVFDEM 83

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
           P  +VVSW +L++   ++G+  +AL  F E+  S ++ D+Y++ +AL AC   G L  G 
Sbjct: 84  PHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACADAGLLSRGR 143

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
            +H+   K  L+    +AN L  +Y +C  V+ A+     M  +D+ +W +VI+A  + G
Sbjct: 144 EVHAFCAKLGLDSTPYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTTVISAYVQTG 203

Query: 185 NLELAFGFLHRL--------PNPDTISYNEVI---------------------NGIAQFG 215
             + A     R+         +P+  +Y  VI                      G A   
Sbjct: 204 RAKEAIEAFVRMLREESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACAR 263

Query: 216 DIEDAIMILSSMPS---------------PNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            + ++++ L +  +                +  SW++I++GY       +A  LF EM+ 
Sbjct: 264 SVANSLVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRH 323

Query: 261 KD-VPM-DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
               P  +E+T +++LS  A  ++L  G  +H+  +  GL+   ++ SAL+DMY K G +
Sbjct: 324 HSGCPRPNEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSM 383

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
             AD +F    + ++V+W AMI GYA +G   K +ELF+++  V  L+PD VTF+ VL A
Sbjct: 384 LDADIVFSHRVKDDVVSWTAMIVGYAEHGHSKKALELFQEMCHV-GLKPDHVTFIGVLNA 442

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY- 437
           C H     +    Y   M + YG+ P  EH   ++ L+G+ G +  A+ +I ++      
Sbjct: 443 CCHAG-EVELGLRYLNEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGKIAANERD 501

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497
           GVVW +LL A  A  + +  + +A   ++ E      +V + NLY S G W  A+  R+ 
Sbjct: 502 GVVWTSLLRACAARGEEETGKKAAERAMEAEPWGAGAHVAMANLYASKGQWHEAAQERHM 561

Query: 498 MRERGLRKEAGCSWIEV 514
           M+++G+ K AG S I V
Sbjct: 562 MKQKGVVKGAGWSSITV 578



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 129/274 (47%), Gaps = 12/274 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFY-RKINSLADAHK 59
           PNEY    ++ A +D+ W    +QLH    + GF     V+ +L+  Y R    L+ A  
Sbjct: 226 PNEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACARSVANSLVTLYTRAAGCLSAADA 285

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE--IYADAYSFTSALAACGQL 117
           +F E     VVSW+++ISGY Q G    A  LF E+         + ++  S L+ C   
Sbjct: 286 VFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGCPRPNEFTLASLLSVCATA 345

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
            SL  G  +H+  V   LE   +I + LIDMYGK GS+ DA  VF   +  D++SW ++I
Sbjct: 346 ASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADIVFSHRVKDDVVSWTAMI 405

Query: 178 AASARNGN----LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS---- 229
              A +G+    LEL     H    PD +++  V+N     G++E  +  L+ M      
Sbjct: 406 VGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNACCHAGEVELGLRYLNEMNQIYGL 465

Query: 230 -PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
            P    +  ++       R+ EA  L G++ + +
Sbjct: 466 YPAKEHYGCVVDLLGRAGRINEAEELIGKIAANE 499


>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 141/489 (28%), Positives = 260/489 (53%), Gaps = 13/489 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGF-----YRKINSLADAHKMFVEIPQPSVVSWNSLIS 77
           +Q+   ++ +G + + F S+ L+ F     +R ++   +   +      P+  SWN  I 
Sbjct: 67  KQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTN---ILFNTRNPNTFSWNVAIR 123

Query: 78  GYVQSGKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE 136
           G++ S   R+A+ L+   L+      D Y++     AC +L  +++G  I   ++    +
Sbjct: 124 GFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFD 183

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196
             + ++N +I +   CG ++ A  +F +   +D++SWNS+I  +   GNLE A      +
Sbjct: 184 SDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMI--NGYCGNLESARKLFDSM 241

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
            N   +S+  ++ G AQ G ++ A  +   MP  +   WN+++ GYV+ NR  EAL LF 
Sbjct: 242 TNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFN 301

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           EMQ+ ++  DE T  + LS  + L AL  G+ IH  + K  L  ++ + +AL+DMY+KCG
Sbjct: 302 EMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCG 361

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           ++  A  +F+ L  +N +TW A+I+G A +G+    I  F ++     + PD VTFL +L
Sbjct: 362 KITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMID-NSVMPDEVTFLGLL 420

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
           +AC H  +  ++  +YF  M+  + + P ++H   M+ L+G+ G +  A+ +I+ +   +
Sbjct: 421 SACCHGGL-VEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEA 479

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
             VVW AL  A     ++ +   +A+++++++     +YV+L N+Y     W  A   R 
Sbjct: 480 DAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARK 539

Query: 497 FMRERGLRK 505
            MR+RG+ K
Sbjct: 540 LMRQRGVEK 548



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 149/380 (39%), Gaps = 87/380 (22%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    L +A + L       ++  ++L  GF S++FVS A++        L  A KM
Sbjct: 149 PDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKM 208

Query: 61  FVEIPQPSVVSWNSLIS-----------------------------GYVQSGKYRKALNL 91
           F +     +VSWNS+I+                             GY QSG    A  L
Sbjct: 209 FDKSCVRDLVSWNSMINGYCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKL 268

Query: 92  FVELERSE-------------------------------IYADAYSFTSALAACGQLGSL 120
           F E+   +                               I  D  +  S L+AC QLG+L
Sbjct: 269 FDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGAL 328

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +G+ IH  I K+ L   V +   LIDMY KCG +  AI VF E+  ++ ++W ++I+  
Sbjct: 329 DVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGL 388

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A +GN   A  +   + +    PD +++  +++     G +E+     S M      SP 
Sbjct: 389 ALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPK 448

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              ++ ++        + EA  L      K +P++               A+ WG L  +
Sbjct: 449 LKHYSCMVDLLGRAGLLEEAEELI-----KSMPIEA-------------DAVVWGALFFA 490

Query: 292 CVIKQGLDASIVVASALLDM 311
           C I   +      AS LL M
Sbjct: 491 CRIHGNVLMGERAASKLLQM 510


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 163/565 (28%), Positives = 283/565 (50%), Gaps = 73/565 (12%)

Query: 23  QQLHCYILKSGFLSN---VFVSTALMGFYRKINSLADAHKMFVEIPQP--SVVSWNSLIS 77
           ++ H + LK GFL      F   AL+  Y ++  + DA ++F         +V+WN++IS
Sbjct: 174 REAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMIS 233

Query: 78  GYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS-LE 136
             VQ G+  +A+ +  ++    +  D  +F SAL AC +L  L +G  +H+ ++K   L 
Sbjct: 234 LLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLA 293

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMID--KDIISWNSVIAASARNGNL-ELAFGFL 193
               +A+ L+DMY     V  A  VF  + +  + +  WN++I   A++G + E A    
Sbjct: 294 ANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELF 353

Query: 194 HRL-------PNPDTIS---------------------------------YNEVINGIAQ 213
            R+       P+  T++                                  N +++  A+
Sbjct: 354 SRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYAR 413

Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ-------------S 260
            G +++A  I + +   +  SWN+++TG + +  + EA  L  EMQ              
Sbjct: 414 LGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEG 473

Query: 261 KDVPMD-------EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
            D  +D         T  T+L G A L+A   G  IH   ++  L++ + V SAL+DMY+
Sbjct: 474 DDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYA 533

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           KCG + +A ++F  L R+N++TWN +I  Y  +G   + + LF+++    +  P+ VTF+
Sbjct: 534 KCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFI 593

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE-HCCSMIRLMGQKGEVWRAQRMIREL 432
             LAACSH+ +  D+  E F+ M +DYG +PT   H C ++ ++G+ G +  A  +I  +
Sbjct: 594 AALAACSHSGL-VDRGLELFQGMKRDYGFEPTPYLHAC-VVDVLGRAGRLDEAYGIISSM 651

Query: 433 GFGSYGV-VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA 491
             G + V  W  +L A     ++ + RI+A  + +LE D    YV+LCN+Y++ G W+ +
Sbjct: 652 APGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENS 711

Query: 492 SVMRNFMRERGLRKEAGCSWIEVEN 516
           + +R  MR+RG+ KE GCSWIE++ 
Sbjct: 712 TEVRGMMRQRGVAKEPGCSWIELDG 736



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 32/262 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  +  +L A +     T  + +H Y++K    SN FV  ALM  Y ++  + +AH +
Sbjct: 364 PSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTI 423

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE-------------LERSEIYADAY-- 105
           F  I    +VSWN+LI+G +  G   +A  L  E             LE  +   D    
Sbjct: 424 FAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRC 483

Query: 106 -----SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIG 160
                +  + L  C  L +   G  IH   V+++LE  + + + L+DMY KCG +  A  
Sbjct: 484 MPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARA 543

Query: 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL-----PNPDTISYNEVINGIAQFG 215
           VF  +  +++I+WN +I A   +G  + A     R+       P+ +++   +   +  G
Sbjct: 544 VFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSG 603

Query: 216 DIEDAIMILSSM-------PSP 230
            ++  + +   M       P+P
Sbjct: 604 LVDRGLELFQGMKRDYGFEPTP 625


>gi|449470126|ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Cucumis sativus]
          Length = 1463

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 137/459 (29%), Positives = 252/459 (54%), Gaps = 11/459 (2%)

Query: 67  PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI 126
           P V +W S+ISG+ QS +  +AL+ F ++  + +  +  +  SA +AC  L SLQ G+ I
Sbjct: 314 PDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEI 373

Query: 127 HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNL 186
           H   +K  + R  ++ N LIDMY KCG +E A  VF  +++KD+ +WNS+I    + G  
Sbjct: 374 HCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYTWNSMIGGYCQAGYG 433

Query: 187 ELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPSP-----NSSSWNS 237
             A+    RL      P+ +++N +I+G  Q GD + A+ +   M        N++SWNS
Sbjct: 434 GKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIMEKDGGVKRNTASWNS 493

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
           ++ GY       +AL +F +MQS +   +  T  ++L   A + A      IH CV+++ 
Sbjct: 494 LIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANVMAEKKIKEIHGCVLRRN 553

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
           L++ + VA++L+D Y+K G ++ + ++F  +  K+++TWN++I GY  +G      +LF+
Sbjct: 554 LESELAVANSLVDTYAKSGNIKYSRTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFD 613

Query: 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417
           Q++ +  ++P+  T  +++ A     +  DK    F S+T+++ I PT++H  +M+ L G
Sbjct: 614 QMRNL-GIRPNRGTLASIIHAYGIAGM-VDKGRHVFSSITEEHQILPTLDHYLAMVDLYG 671

Query: 418 QKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477
           + G +  A   I ++       +W +LL+A     +L++A ++A  + +LE D+  +Y +
Sbjct: 672 RSGRLADAIEFIEDMPIEPDVSIWTSLLTACRFHGNLNLAVLAAKRLHELEPDNHVIYRL 731

Query: 478 LCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           L   Y  +G ++    +R   +E  ++K     W+EV N
Sbjct: 732 LVQAYALYGKFEQTLKVRKLGKESAMKKCTAQCWVEVRN 770



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 136/463 (29%), Positives = 240/463 (51%), Gaps = 17/463 (3%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLS--NVFVSTALMGFYRKINSLADAHK 59
           N Y+  +LL+   D+G     ++LH   ++ G +   N FV T L+  Y K   L DA K
Sbjct: 81  NTYI--NLLQTCIDVGSIELGRELH---VRMGLVHRVNPFVETKLVSMYAKCGCLKDARK 135

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  + + ++ +W+++I  Y +  ++++ + LF  +    +  DA+ F   L ACG    
Sbjct: 136 VFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKILQACGNCED 195

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+    IHS +++  L   + ++N ++  + KCG +  A   FG M ++D +SWN +IA 
Sbjct: 196 LETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAG 255

Query: 180 SARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPS----PN 231
             + GN + A   L  + N    P  ++YN +I   +Q GD +  I +   M S    P+
Sbjct: 256 YCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCDLVIDLKKKMESVGLAPD 315

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
             +W S+++G+   +R+ +AL  F +M    V  +  T ++  S  A L +L  G+ IH 
Sbjct: 316 VYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIHC 375

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
             IK G+    +V ++L+DMYSKCG++E A  +F ++  K++ TWN+MI GY + G   K
Sbjct: 376 FAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYTWNSMIGGYCQAGYGGK 435

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411
             ELF +L+    + P+ VT+  +++ C       D+  + F+ M KD G+K       S
Sbjct: 436 AYELFMRLRE-STVMPNVVTWNAMISGCIQNGDE-DQAMDLFQIMEKDGGVKRNTASWNS 493

Query: 412 MIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDL 454
           +I    Q GE  +A  + R++   ++      +LS   AC+++
Sbjct: 494 LIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANV 536



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 149/313 (47%), Gaps = 22/313 (7%)

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV-- 139
           +G  R+A+     + +        ++ + L  C  +GS++LG  +H   V+  L   V  
Sbjct: 58  NGLLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELH---VRMGLVHRVNP 114

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHR 195
            +   L+ MY KCG ++DA  VF  M ++++ +W+++I A +R       +EL F  +  
Sbjct: 115 FVETKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGD 174

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSW----NSILTGYVNRNRVPEA 251
              PD   + +++       D+E   +I S +     S +    NSILT +V   ++  A
Sbjct: 175 GVLPDAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLA 234

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
              FG M  +    D  +++ M++G            +   +  QG    +V  + ++  
Sbjct: 235 RKFFGNMDER----DGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIAS 290

Query: 312 YSKCGQVEIADSMFRSL----CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           YS+ G  ++   + + +       ++ TW +MI+G++++  +++ ++ F+++  +  ++P
Sbjct: 291 YSQLGDCDLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKM-ILAGVEP 349

Query: 368 DSVTFLNVLAACS 380
           +++T  +  +AC+
Sbjct: 350 NTITIASATSACA 362



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 127/275 (46%), Gaps = 22/275 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  +L A +++  +   +++H  +L+    S + V+ +L+  Y K  ++  +  +
Sbjct: 521 PNSVTILSILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTV 580

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    +++WNS+I+GY+  G    A  LF ++    I  +  +  S + A G  G +
Sbjct: 581 FNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIAGMV 640

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G  + S I  ++ +   +     ++D+YG+ G + DAI    +M I+ D+  W S++ 
Sbjct: 641 DKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSGRLADAIEFIEDMPIEPDVSIWTSLLT 700

Query: 179 ASARNGNLELAF---GFLHRLPNPDTISYNEVINGIAQFGDIEDAIMIL-----SSMPSP 230
           A   +GNL LA      LH L   + + Y  ++   A +G  E  + +      S+M   
Sbjct: 701 ACRFHGNLNLAVLAAKRLHELEPDNHVIYRLLVQAYALYGKFEQTLKVRKLGKESAMKKC 760

Query: 231 NSSSWNSILTGYVNRNRVPEALHLF--GEMQSKDV 263
            +  W  +      RN+V    HLF  G+    DV
Sbjct: 761 TAQCWVEV------RNKV----HLFVTGDQSKLDV 785


>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
 gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 163/559 (29%), Positives = 270/559 (48%), Gaps = 43/559 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +    L +A + L   T  Q +H +++KS F S+++V TA++  Y K   + DA+ +
Sbjct: 50  PNNFTFPFLSKACAKLSHLTNSQIIHTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNL 109

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P  ++ SWN++I G+ Q G   +  NLF+ +       DA +      A     SL
Sbjct: 110 FDKMPVRNIASWNAMIIGFSQIGSLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSL 169

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG--EMIDKDIISWNSVIA 178
           +   A+H+  ++  L+    ++N  I  Y KCG ++ A  VF   +   +  +SWNS+IA
Sbjct: 170 RFLKAVHAIGIETGLDADTSVSNTWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIA 229

Query: 179 ASARNGNLE---------LAFGF----------LHRLPNPDTISYNEVING--------- 210
             A  G            L  GF          L     P+ + Y  +I+G         
Sbjct: 230 CYAHFGKYVDAVKSYKGLLCDGFKPDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDS 289

Query: 211 -----------IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                       ++ GDI  A ++   M      SW ++++GY    RV +AL LF  M+
Sbjct: 290 DISLINTLISMYSRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAME 349

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
                 D  T  +++SG     AL  G  I +      L   +VV +AL+DMY+KCG + 
Sbjct: 350 ETGEKPDIVTVLSLISGCGKTGALGLGHWIDNYASLHELKKDVVVCNALIDMYAKCGSLN 409

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F SL  + +V+W AMI   A NG+  + ++LF  L     ++P+++TFL VL AC
Sbjct: 410 DAREIFYSLPNRTVVSWTAMIAACALNGEFREALDLFSLLSE-SGIEPNNITFLAVLQAC 468

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
            H     +K  E F  MT+ YGI P ++H   MI L+G+KG++  A  +I+++       
Sbjct: 469 CHGGY-LEKGRECFMMMTERYGINPGLDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDEG 527

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W ALL A    +++++    +  + +L+      +V + N+Y S G WD  + MR  MR
Sbjct: 528 IWGALLGACKIHNNMEIGEYVSRYLFELQPRVAVSFVEMANIYASVGRWDEVAAMRKTMR 587

Query: 500 ERGLRKEAGCSWIEVENVA 518
              +RK  G S ++V  ++
Sbjct: 588 SNQMRKSPGKSVVQVNGMS 606



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 191/417 (45%), Gaps = 45/417 (10%)

Query: 72  WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIV 131
           WNS I G V  G   KAL LF +L+ + +  + ++F     AC +L  L     IH+ +V
Sbjct: 20  WNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNSQIIHTHVV 79

Query: 132 KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG 191
           K      + +   ++DMY KCG V+DA  +F +M  ++I SWN++I   ++ G+L+  F 
Sbjct: 80  KSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRVFN 139

Query: 192 FLHRLP---------------------------------------NPDTISYNEVINGIA 212
               +                                        + DT   N  I   +
Sbjct: 140 LFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVSNTWIAAYS 199

Query: 213 QFGDIEDAIMILSSM--PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
           + G+++ A M+   +   + +S SWNS++  Y +  +  +A+  +  +       D  T 
Sbjct: 200 KCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDASTI 259

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
            ++LS      AL +G LIH    + G D+ I + + L+ MYS+CG +  A  +F  +  
Sbjct: 260 ISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISMYSRCGDISSATILFDGMSI 319

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
           +  V+W AMI+GY+  G +   + LF  ++   + +PD VT L++++ C  T      + 
Sbjct: 320 RTCVSWTAMISGYSEVGRVDDALVLFNAMEETGE-KPDIVTVLSLISGCGKTGAL--GLG 376

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
            + ++    + +K  V  C ++I +  + G +  A+ +   L   +  V W A+++A
Sbjct: 377 HWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPNRTV-VSWTAMIAA 432


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/462 (29%), Positives = 247/462 (53%), Gaps = 43/462 (9%)

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCG 153
           ++R  +  D   ++  L  C +LG ++ G  +H+ +V  + L+  +V+ N +++MY KCG
Sbjct: 78  IQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCG 137

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE---LAFGFLHRL---PNPDTISY--- 204
            ++DA  +F EM  KD+++W ++IA  ++N       L F  + RL   PN  T+S    
Sbjct: 138 CLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLK 197

Query: 205 ------------------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSS 234
                                         + +++  A+ G ++ A +    MP+ +  S
Sbjct: 198 ASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVS 257

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
           WN++++G+  +     ALHL  +MQ K+     +T+S++ S  A + AL  G  +H+ +I
Sbjct: 258 WNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMI 317

Query: 295 KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
           K GL     + + LLDMY+K G ++ A  +F  L + ++V+WN M+TG A++G   + ++
Sbjct: 318 KSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLD 377

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
            FEQ+  +  ++P+ ++FL VL ACSH+ +  D+   YFE M K Y ++P V H  + + 
Sbjct: 378 RFEQMLRI-GIEPNEISFLCVLTACSHSGL-LDEGLYYFELMKK-YKVEPDVPHYVTFVD 434

Query: 415 LMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474
           L+G+ G + RA+R IRE+       VW ALL A     ++++   +A    +L+      
Sbjct: 435 LLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGP 494

Query: 475 YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            ++L N+Y S G W   + +R  M+E G++K+  CSW+E+EN
Sbjct: 495 RMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIEN 536



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 158/329 (48%), Gaps = 46/329 (13%)

Query: 1   PNEYVLFHLLRAS-SDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           PN + L  LL+AS S+ G D    QLH + LK G+ S+V+V +AL+  Y +   +  A  
Sbjct: 187 PNHFTLSSLLKASGSEHGLDP-GTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQL 245

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
            F  +P  S VSWN+LISG+ + G+   AL+L  +++R       ++++S  +AC  +G+
Sbjct: 246 AFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGA 305

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+ G  +H+ ++K  L+    I N L+DMY K GS++DA  VF  ++  D++SWN+++  
Sbjct: 306 LEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTG 365

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
            A++G      G              E ++   Q         +L     PN  S+  +L
Sbjct: 366 CAQHG-----LG-------------KETLDRFEQ---------MLRIGIEPNEISFLCVL 398

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM--LSGIAGL---------------SA 282
           T   +   + E L+ F  M+   V  D   + T   L G  GL               +A
Sbjct: 399 TACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTA 458

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDM 311
             WG L+ +C + + ++  +  A    ++
Sbjct: 459 AVWGALLGACRMHKNMELGVYAAERAFEL 487


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 160/522 (30%), Positives = 270/522 (51%), Gaps = 48/522 (9%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NVF   AL+  Y K + +  AH +F +IPQP +VS+N+LI+ Y   G    AL+LF E+ 
Sbjct: 73  NVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMR 132

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
              +  D ++F+  + AC     + L   +HS       +  V + N L+  Y K G +E
Sbjct: 133 EMGLVMDGFTFSGVITAC--CNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILE 190

Query: 157 DAIGVFGEMID--KDIISWNSVIAASARNGN----LELAFGFLHRLPNPD---------T 201
           +A  VF  M +  +D +SWNS+I A  ++      L L    +HR    D         T
Sbjct: 191 EAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTT 250

Query: 202 ISYNEVINGIAQF---------------------------GDIEDAIMILSSMPSPNSSS 234
            S  E ++G  QF                             + ++  +   +   +   
Sbjct: 251 FSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVV 310

Query: 235 WNSILTGYV-NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
           WN++++GY  N+    EAL  F +MQ      D+ +F   +S  + LS+ + G   H+  
Sbjct: 311 WNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALA 370

Query: 294 IKQGLDAS-IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           +K  + ++ I V +AL+ MYSKCG ++ A  +F+ + + N VT N++I GYA++G  T+ 
Sbjct: 371 MKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTES 430

Query: 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412
           + LFEQ+     + P S+T +++L+AC+HT    ++  +YF  M   +GI+P  EH   M
Sbjct: 431 LNLFEQMLAA-SIAPTSITLVSILSACAHTG-RVEEGKKYFNMMKDIFGIEPEAEHYSCM 488

Query: 413 IRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472
           I L+G+ G++  A+R+I  + F      W ALL A     ++++A  +A + ++LE  + 
Sbjct: 489 IDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNA 548

Query: 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
             Y+ML ++Y++   W+ A+ +R  MR+RG+RK+ GCSWIE+
Sbjct: 549 VPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIEL 590



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 143/353 (40%), Gaps = 38/353 (10%)

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
           SF   L +C     L  G ++H+  +K  +     ++N  I +Y KC  +  A   F + 
Sbjct: 10  SFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQT 69

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILS 225
            +                               P+  S+N +I   A+   I  A  +  
Sbjct: 70  HE-------------------------------PNVFSFNALIAAYAKESLIHVAHHLFD 98

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
            +P P+  S+N+++  Y +R     AL LFGEM+   + MD +TFS +++       L  
Sbjct: 99  QIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACCNHVGLI- 157

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR--KNLVTWNAMITGY 343
              +HS     G D+ + V ++LL  YSK G +E A+ +F  +    ++ V+WN+MI  Y
Sbjct: 158 -RQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAY 216

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
            ++    K + L+  +   R  + D  T  +VL   S  +     +   F +     G  
Sbjct: 217 GQHKRGLKALALYRDM-VHRGFEIDMFTLASVLTTFSCVEDLSGGLQ--FHAKAIKTGFN 273

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
                   +I +  + G      R + E   GS  VVW  ++S      +L V
Sbjct: 274 KNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSV 326



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 100/192 (52%), Gaps = 3/192 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSN-VFVSTALMGFYRKINSLADAHK 59
           P++      + A S+L   +  +Q H   +KS   SN + V+ AL+  Y K  +L DA K
Sbjct: 342 PDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARK 401

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  +PQ + V+ NS+I+GY Q G   ++LNLF ++  + I   + +  S L+AC   G 
Sbjct: 402 LFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGR 461

Query: 120 LQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
           ++ G    + +   + +E      +C+ID+ G+ G + +A  +   M       +W +++
Sbjct: 462 VEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALL 521

Query: 178 AASARNGNLELA 189
            A  + GN+ELA
Sbjct: 522 GACRKYGNMELA 533


>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
 gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 159/563 (28%), Positives = 270/563 (47%), Gaps = 77/563 (13%)

Query: 23  QQLHCYILKSGF--LSNVFVSTALMGFYRKINSLAD-AHKMFVEIPQPSVVSWNSLISGY 79
           +Q+H  IL  G   L  +     L+       ++A   H +      P   SW   I   
Sbjct: 21  KQVHALILIHGLSHLEPILARQILLSASNYSATVAQYVHSVLHHSKSPDSFSWACAIRFS 80

Query: 80  VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE--- 136
            Q G++++A  L+V+++R  ++   ++ +SAL AC ++     G++IH ++ K+      
Sbjct: 81  TQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQVQKFGFSGGG 140

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMID----------------------------- 167
            G+ +   L+D Y K G +E A  +F EM +                             
Sbjct: 141 DGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEI 200

Query: 168 --KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILS 225
             KD+ISWNS+I+  AR G++E A     ++P  +  S+N +I+G  +FGDI+ A     
Sbjct: 201 PQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFD 260

Query: 226 SMPSPNSSSWNSILTGY-------------------------------VNRNRVPEALHL 254
           +MP  N+ SW ++++GY                                  +R  EAL L
Sbjct: 261 AMPQRNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKL 320

Query: 255 FGEMQSKDVPM--DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
           F  M + DV +  DE T ++++S  + L  L +G  I S + + G++    +A+ALLD+Y
Sbjct: 321 FNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLY 380

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
           +KCG ++ A  +F  L +K+LV + AMI G   NG     I+LF+++   + + P+S+TF
Sbjct: 381 AKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQ-IFPNSITF 439

Query: 373 LNVLAACSHTDIPFDKVSEYFESMT--KDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
           + +L A +H  +    V E +   T  K Y + P+V+H   M+ L G+ G +  A  +I+
Sbjct: 440 IGLLTAYNHAGL----VEEGYHCFTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALELIK 495

Query: 431 ELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490
            +    +  VW ALL A    ++++   I+A    +LE D+     +L N+Y S   WD 
Sbjct: 496 SMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYCSLLSNIYASGERWDD 555

Query: 491 ASVMRNFMRERGLRKEAGCSWIE 513
              +R   +E+G  K  GCSW+E
Sbjct: 556 VKRLRKVTKEKGFSKIPGCSWME 578



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 110/224 (49%), Gaps = 3/224 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  L  ++ A S LG   +   +  Y+ + G   +  ++TAL+  Y K  S+  A+++
Sbjct: 333 PDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYEL 392

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  +V++ ++I G   +GK   A+ LF E+  ++I+ ++ +F   L A    G +
Sbjct: 393 FHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLV 452

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
           + G    + + KY+L   V     ++D++G+ G +++A+ +   M +      W +++ A
Sbjct: 453 EEGYHCFTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLA 512

Query: 180 SARNGNLELA-FGFLHRLP-NPDTISYNEVINGIAQFGDIEDAI 221
              + N+E       H     PDT  Y  +++ I   G+  D +
Sbjct: 513 CRLHNNVEFGEIAAQHCFELEPDTTGYCSLLSNIYASGERWDDV 556


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 155/588 (26%), Positives = 267/588 (45%), Gaps = 78/588 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  ++L HLL A    G     ++    +  +    N+F   AL+        L D   +
Sbjct: 39  PPTHLLNHLLTAYGKAGRHARARR----VFDATPHPNLFTYNALLSTLAHARLLDDMDSL 94

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER--SEIYADAYSFTSALAACGQLG 118
           F  + Q   VS+N++I+G+   G + +A+ L+  L R  S +     + ++ + A   LG
Sbjct: 95  FASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALG 154

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM------------- 165
              LG   H +I++        + + L+ MY K G + DA  VF EM             
Sbjct: 155 DRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMIT 214

Query: 166 ------------------IDKDIISWNSVIAASARNGNLELAFGFLHRLPNP----DTIS 203
                              D+D I+W +++    +NG    A  F  R+       D  +
Sbjct: 215 GLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYT 274

Query: 204 YNEVINGIAQFGDIEDAIMI-----------------------------------LSSMP 228
           +  ++        +E    I                                      M 
Sbjct: 275 FGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMS 334

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             N  SW +++ GY       EA+ +F EMQ   +  D++T  +++S  A L++L  G  
Sbjct: 335 CKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQ 394

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
            H   +  GL   I V++AL+ +Y KCG +E A  +F  +   + V+W A++TGYA+ G 
Sbjct: 395 FHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGR 454

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
             + I+LFE++   +D++PD VTF+ VL+ACS      +K   YF SM KD+GI P  +H
Sbjct: 455 AKETIDLFEKM-LAKDVKPDGVTFIGVLSACSRAGF-VEKGCSYFHSMQKDHGIVPIDDH 512

Query: 409 CCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE 468
              MI L  + G +  A+  I+++      + W  LLSA     D+++ + +A  +++++
Sbjct: 513 YTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEID 572

Query: 469 GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
             +   YV+LC+++ + GNW+  + +R  MR+R ++KE GCSWI+ +N
Sbjct: 573 PQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKN 620


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 162/555 (29%), Positives = 273/555 (49%), Gaps = 53/555 (9%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65
           L  L  A  DL      + +H  +   G  S    +TAL   Y K    ADA ++F  +P
Sbjct: 65  LLKLCAARGDLATG---RAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMP 121

Query: 66  QPSVVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGSLQLGM 124
               V+WN+L++GY ++G  R A+ + V ++  E    D+ +  S L AC    +L    
Sbjct: 122 VRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACR 181

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
             H+  ++  LE  V +A  ++D Y KCG +  A  VF  M  K+ +SWN++I   A+NG
Sbjct: 182 EAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNG 241

Query: 185 NLELAFGFLHRLP---------------------------------------NPDTISYN 205
           +   A    +R+                                        + +    N
Sbjct: 242 DSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMN 301

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
            +I   ++   ++ A  +   +      SWN+++ G        +A+ LF  MQ ++V  
Sbjct: 302 ALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKP 361

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           D +T  +++  +A +S       IH   I+  LD  + V +AL+DMY+KCG+V IA  +F
Sbjct: 362 DSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILF 421

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
            S   ++++TWNAMI GY  +G     +ELFE++K++  + P+  TFL+VL+ACSH  + 
Sbjct: 422 NSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSI-GIVPNETTFLSVLSACSHAGL- 479

Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA----QRMIRELGFGSYGVVW 441
            D+  EYF SM +DYG++P +EH  +M+ L+G+ G++  A    Q+M  + G   YG   
Sbjct: 480 VDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYG--- 536

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            A+L A     ++++A  SA ++ +L       +V+L N+Y +   W   + +R  M + 
Sbjct: 537 -AMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKN 595

Query: 502 GLRKEAGCSWIEVEN 516
           GL+K  G S I+++N
Sbjct: 596 GLQKTPGWSIIQLKN 610



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 163/339 (48%), Gaps = 41/339 (12%)

Query: 88  ALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLID 147
           AL  FV +  +       +FTS L  C   G L  G A+H+++    ++   + A  L +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 148 MYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL-----PNPDTI 202
           MY KC    DA  VF  M  +D ++WN+++A  ARNG   +A   + R+       PD+I
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 203 SY-----------------------------------NEVINGIAQFGDIEDAIMILSSM 227
           +                                      +++   + GDI  A ++   M
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
           P+ NS SWN+++ GY       EAL LF  M  + V + + +    L     L  L  GM
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
            +H  +++ GLD+++ V +AL+ MYSKC +V++A  +F  L R+  V+WNAMI G A+NG
Sbjct: 283 RVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNG 342

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
                + LF +++ + +++PDS T ++V+ A +    P 
Sbjct: 343 CSEDAVRLFTRMQ-LENVKPDSFTLVSVIPALADISDPL 380



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 191/419 (45%), Gaps = 46/419 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L A ++      C++ H + ++SG    V V+TA++  Y K   +  A  +
Sbjct: 159 PDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVV 218

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P  + VSWN++I GY Q+G  R+AL LF  +    +     S  +AL ACG+LG L
Sbjct: 219 FDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCL 278

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             GM +H  +V+  L+  V + N LI MY KC  V+ A  VF E+  +  +SWN++I   
Sbjct: 279 DEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGC 338

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGD-------------------- 216
           A+NG  E A     R+      PD+ +   VI  +A   D                    
Sbjct: 339 AQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDV 398

Query: 217 ---------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                          +  A ++ +S    +  +WN+++ GY +      A+ LF EM+S 
Sbjct: 399 YVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSI 458

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEI 320
            +  +E TF ++LS  +    +  G    + + +  GL+  +     ++D+  + G+++ 
Sbjct: 459 GIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDE 518

Query: 321 ADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQ-LKTVRDLQPDSVTFLNVLA 377
           A +  + +     L  + AM+        L K +EL E+  + + +L P    +  +LA
Sbjct: 519 AWAFIQKMPMDPGLSVYGAMLGAC----KLHKNVELAEESAQKIFELGPQEGVYHVLLA 573



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 72/129 (55%)

Query: 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307
           +P AL  F  M S   P    TF+++L   A    L  G  +H+ +  +G+D+  + A+A
Sbjct: 40  LPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATA 99

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           L +MY+KC +   A  +F  +  ++ V WNA++ GYARNG     +E+  +++     +P
Sbjct: 100 LANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERP 159

Query: 368 DSVTFLNVL 376
           DS+T ++VL
Sbjct: 160 DSITLVSVL 168



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 110/240 (45%), Gaps = 17/240 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ + L  ++ A +D+      + +H Y ++     +V+V TAL+  Y K   +  A  +
Sbjct: 361 PDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARIL 420

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +  V++WN++I GY   G  + A+ LF E++   I  +  +F S L+AC   G +
Sbjct: 421 FNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLV 480

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G    + + + Y LE G+     ++D+ G+ G +++A     +M +D  +  + +++ 
Sbjct: 481 DEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLG 540

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
           A   + N+ELA                E    I + G  E    +L +    N+S W  +
Sbjct: 541 ACKLHKNVELA---------------EESAQKIFELGPQEGVYHVLLANIYANASMWKDV 585


>gi|357516987|ref|XP_003628782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522804|gb|AET03258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1002

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 156/527 (29%), Positives = 278/527 (52%), Gaps = 17/527 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+E  L     A ++L      +Q H  ++  GF  N  + +++M FY K+  + +   +
Sbjct: 311 PSEVSLSGFFSACANLEAVEEGKQGHALVILMGFELNYVLGSSIMNFYSKVGLIEEVELV 370

Query: 61  FVEIP-QPSVVSWNSLISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLG 118
           F  +      V+WN +IS YVQ G + KAL +   +   E +  D  + +S LA      
Sbjct: 371 FRSMAVLKDEVTWNLMISSYVQFGMFEKALEMCHWMREEENLRFDCVTLSSLLALAADTR 430

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF---GEMIDKDIISWNS 175
            ++LG  +H   ++      + + + ++DMY KCG ++ A GVF   G+   KDI+ WN+
Sbjct: 431 DVKLGKKLHGFCIRNEFYSDMAVLSGVLDMYAKCGIMDCARGVFHFAGK--KKDIVLWNT 488

Query: 176 VIAASARNG----NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP--- 228
           ++AA A  G     L+L F        P+ +S+N +I G  + G + +A  + S M    
Sbjct: 489 MLAACAEKGLSGEALKLFFQMQMESVPPNVVSWNSLIFGFFRNGQVVEAQDMFSEMQLSG 548

Query: 229 -SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
            +PN  +W ++++G        EA  +F +MQ   +  +  + ++ LS    ++ L +G 
Sbjct: 549 VTPNLITWTTMISGLAQNGLGYEASRVFQQMQGAGMRPNSISITSALSACTNMALLNYGR 608

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
            IH  V++  +  S+ + ++++DMY+KCG ++ A  +F     K L  +NAMI+ YA +G
Sbjct: 609 SIHGYVMRNFMSFSLQITTSIIDMYAKCGNLDDAKFVFIICSTKELPVYNAMISAYASHG 668

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407
              + + LF++L   + + PD +TF +VL+ACSH  +   +  E F+ M  +  +KP+ +
Sbjct: 669 KSAEALALFQEL-VKQGIMPDHITFTSVLSACSHGRL-LKEGLELFKYMVCELQMKPSEK 726

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
           H   +++L+   G++  A R+I  +       +  +LL+A G   + ++A   A  ++K+
Sbjct: 727 HYGCLVKLLTNDGQLDEALRIILTMPSPPDAHILGSLLAACGQNHETELANYIAKWLLKV 786

Query: 468 EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           E ++   YV L N+Y + G WD  S +R FM+E+GL+K  GCSWIEV
Sbjct: 787 EPNNPGNYVALSNVYAALGKWDEVSNIRGFMKEKGLKKIPGCSWIEV 833



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/481 (24%), Positives = 220/481 (45%), Gaps = 53/481 (11%)

Query: 24  QLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEI-PQPSVVSWNSLISGYV 80
           Q+H +++K G  + +N FV + L+  Y K N    A   F  +    ++ S+ +++    
Sbjct: 124 QIHAHLIKKGSSYSTNEFVESKLVILYAKCNLTRVAVHFFRNVVKNQNLFSYAAIVGLQA 183

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG-- 138
           ++G Y++AL  +VE+       D +   + L ACG L  +  G  IH  +VK   E    
Sbjct: 184 RNGLYKEALLSYVEMMEKGFCPDNFVVPNGLKACGGLRWIGFGRGIHGFVVKMGNEFDGC 243

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMID--KDIISWNSVIAASARNGNLELAFGFLHRL 196
           V +A  L+DMYGKCG +EDA  VF EM +  ++ + WNS+I    +NG    A G   ++
Sbjct: 244 VYVATSLVDMYGKCGVLEDAEKVFDEMPNRKRNDVVWNSMIVGYVQNGMNVEAVGLFEKM 303

Query: 197 P-----NPDTISY-----------------------------------NEVINGIAQFGD 216
                  P  +S                                    + ++N  ++ G 
Sbjct: 304 RFEGGVEPSEVSLSGFFSACANLEAVEEGKQGHALVILMGFELNYVLGSSIMNFYSKVGL 363

Query: 217 IEDAIMILSSMPS-PNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTML 274
           IE+  ++  SM    +  +WN +++ YV      +AL +   M + +++  D  T S++L
Sbjct: 364 IEEVELVFRSMAVLKDEVTWNLMISSYVQFGMFEKALEMCHWMREEENLRFDCVTLSSLL 423

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR-SLCRKNL 333
           +  A    +  G  +H   I+    + + V S +LDMY+KCG ++ A  +F  +  +K++
Sbjct: 424 ALAADTRDVKLGKKLHGFCIRNEFYSDMAVLSGVLDMYAKCGIMDCARGVFHFAGKKKDI 483

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393
           V WN M+   A  G   + ++LF Q++ +  + P+ V++ N L      +    +  + F
Sbjct: 484 VLWNTMLAACAEKGLSGEALKLFFQMQ-MESVPPNVVSW-NSLIFGFFRNGQVVEAQDMF 541

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD 453
             M    G+ P +    +MI  + Q G  + A R+ +++          ++ SA  AC++
Sbjct: 542 SEMQLS-GVTPNLITWTTMISGLAQNGLGYEASRVFQQMQGAGMRPNSISITSALSACTN 600

Query: 454 L 454
           +
Sbjct: 601 M 601



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 167/363 (46%), Gaps = 52/363 (14%)

Query: 76  ISGYVQSGKYRKALNLFVEL-ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY- 133
           IS   ++ K ++A++   +L + + I  D Y     L  C     L LG+ IH+ ++K  
Sbjct: 76  ISFLCKNLKLQEAISTLSQLPQHTPIGPDIYG--ELLQGCVYARDLSLGLQIHAHLIKKG 133

Query: 134 -SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI-DKDIISWNSVIAASARNG------- 184
            S      + + L+ +Y KC     A+  F  ++ ++++ S+ +++   ARNG       
Sbjct: 134 SSYSTNEFVESKLVILYAKCNLTRVAVHFFRNVVKNQNLFSYAAIVGLQARNGLYKEALL 193

Query: 185 ----NLELAF---------------------------GFLHRLPNP-DTISY--NEVING 210
                +E  F                           GF+ ++ N  D   Y    +++ 
Sbjct: 194 SYVEMMEKGFCPDNFVVPNGLKACGGLRWIGFGRGIHGFVVKMGNEFDGCVYVATSLVDM 253

Query: 211 IAQFGDIEDAIMILSSMPS--PNSSSWNSILTGYVNRNRVPEALHLFGEMQSK-DVPMDE 267
             + G +EDA  +   MP+   N   WNS++ GYV      EA+ LF +M+ +  V   E
Sbjct: 254 YGKCGVLEDAEKVFDEMPNRKRNDVVWNSMIVGYVQNGMNVEAVGLFEKMRFEGGVEPSE 313

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
            + S   S  A L A+  G   H+ VI  G + + V+ S++++ YSK G +E  + +FRS
Sbjct: 314 VSLSGFFSACANLEAVEEGKQGHALVILMGFELNYVLGSSIMNFYSKVGLIEEVELVFRS 373

Query: 328 LC-RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT-DIP 385
           +   K+ VTWN MI+ Y + G   K +E+   ++   +L+ D VT  ++LA  + T D+ 
Sbjct: 374 MAVLKDEVTWNLMISSYVQFGMFEKALEMCHWMREEENLRFDCVTLSSLLALAADTRDVK 433

Query: 386 FDK 388
             K
Sbjct: 434 LGK 436



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 126/273 (46%), Gaps = 22/273 (8%)

Query: 228 PSPNSSSWNSILTGYVNRN-RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           P+ N++  + I   ++ +N ++ EA+    ++  +  P+    +  +L G      L+ G
Sbjct: 66  PTTNTTLHHQI--SFLCKNLKLQEAISTLSQL-PQHTPIGPDIYGELLQGCVYARDLSLG 122

Query: 287 MLIHSCVIKQGLDASI--VVASALLDMYSKCGQVEIADSMFRSLCR-KNLVTWNAMITGY 343
           + IH+ +IK+G   S    V S L+ +Y+KC    +A   FR++ + +NL ++ A++   
Sbjct: 123 LQIHAHLIKKGSSYSTNEFVESKLVILYAKCNLTRVAVHFFRNVVKNQNLFSYAAIVGLQ 182

Query: 344 ARNG----DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD-IPFDK-VSEYFESMT 397
           ARNG     L   +E+ E     +   PD+    N L AC     I F + +  +   M 
Sbjct: 183 ARNGLYKEALLSYVEMME-----KGFCPDNFVVPNGLKACGGLRWIGFGRGIHGFVVKMG 237

Query: 398 KDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASGACSDLDV 456
            ++     V    S++ + G+ G +  A+++  E+       VVW +++      + ++V
Sbjct: 238 NEF--DGCVYVATSLVDMYGKCGVLEDAEKVFDEMPNRKRNDVVWNSMIVGY-VQNGMNV 294

Query: 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD 489
             +   E ++ EG  +   V L   +++  N +
Sbjct: 295 EAVGLFEKMRFEGGVEPSEVSLSGFFSACANLE 327


>gi|297796913|ref|XP_002866341.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312176|gb|EFH42600.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 534

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 152/498 (30%), Positives = 261/498 (52%), Gaps = 10/498 (2%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           LH +++ SG      ++  L+ FY +   + DA K+F E+P+  +  W  +I    + G 
Sbjct: 38  LHAHLVTSGIARLTRIAAKLVSFYVECGKVLDARKVFDEMPKRDISGWVVMIGACARYGY 97

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           Y+++L++F E+ +  +  D +   S L A   L   + G  IH  ++K S E    I + 
Sbjct: 98  YQESLDIFREMNKEGLKLDVFIVPSLLKASRNLLDREFGKMIHCLVLKCSFESDAFIVSS 157

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPD 200
           LIDMY K G V +A  VF ++ ++D++ +N++I+  A N   + A   +  +      PD
Sbjct: 158 LIDMYSKFGEVVNARKVFDDLGEQDLVVFNAMISGYANNSQADEALNLVKDMKLLGIKPD 217

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMP----SPNSSSWNSILTGYVNRNRVPEALHLFG 256
            I++N +I+G +  G+ E    IL  M      P+  SW SI++G V+  +  +A   F 
Sbjct: 218 IITWNALISGFSHMGNEEKVSEILELMCLDGYMPDVVSWTSIISGLVHNFQNEKAFDAFK 277

Query: 257 EMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           +M +  +  +  T +T+L     L+ +  G  IH   +  GL+    V SALLDMY KCG
Sbjct: 278 QMLTHGLYPNSATITTLLPACTTLANMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGKCG 337

Query: 317 QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
            +  A  +FR   +K  VT+N+MI  YA +G   K +ELF+Q++   + + D +TF  +L
Sbjct: 338 FISEAMILFRKTPKKTTVTFNSMIFCYANHGLSDKAVELFDQMEATGE-KLDHLTFTAIL 396

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS 436
            ACSH  +  D     F  M   Y I+P +EH   M+ L+G+ G++  A  M++ +    
Sbjct: 397 TACSHAGLT-DLGQNLFHLMQTKYRIEPRLEHYACMVDLLGRAGKLVEAYEMMKTMRMEP 455

Query: 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496
              VW ALL A     ++++ARI+A  + +LE ++    ++L +LY   G+W+    M+ 
Sbjct: 456 DLFVWGALLGACRNHGNMELARIAAKRLAELEPENSGNGLLLTSLYADVGSWENVIRMKK 515

Query: 497 FMRERGLRKEAGCSWIEV 514
            ++++  R+  G SW+E 
Sbjct: 516 MIKKKRFRRFLGSSWVET 533



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 101/191 (52%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  LL A + L    + +++H Y + +G   + FV +AL+  Y K   +++A  +
Sbjct: 286 PNSATITTLLPACTTLANMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGKCGFISEAMIL 345

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F + P+ + V++NS+I  Y   G   KA+ LF ++E +    D  +FT+ L AC   G  
Sbjct: 346 FRKTPKKTTVTFNSMIFCYANHGLSDKAVELFDQMEATGEKLDHLTFTAILTACSHAGLT 405

Query: 121 QLGMAI-HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
            LG  + H    KY +E  +    C++D+ G+ G + +A  +   M ++ D+  W +++ 
Sbjct: 406 DLGQNLFHLMQTKYRIEPRLEHYACMVDLLGRAGKLVEAYEMMKTMRMEPDLFVWGALLG 465

Query: 179 ASARNGNLELA 189
           A   +GN+ELA
Sbjct: 466 ACRNHGNMELA 476



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 85/408 (20%), Positives = 181/408 (44%), Gaps = 77/408 (18%)

Query: 4   YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63
           +++  LL+AS +L    + + +HC +LK  F S+ F+ ++L+  Y K   + +A K+F +
Sbjct: 118 FIVPSLLKASRNLLDREFGKMIHCLVLKCSFESDAFIVSSLIDMYSKFGEVVNARKVFDD 177

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
           + +  +V +N++ISGY  + +  +ALNL  +++   I  D  ++ + ++    +G+ +  
Sbjct: 178 LGEQDLVVFNAMISGYANNSQADEALNLVKDMKLLGIKPDIITWNALISGFSHMGNEE-- 235

Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
                                      K   + + + + G M   D++SW S+I+    N
Sbjct: 236 ---------------------------KVSEILELMCLDGYM--PDVVSWTSIISGLVHN 266

Query: 184 GNLELAFGFLHRL------PNPDTIS-------------YNEVINGIAQFGDIED----- 219
              E AF    ++      PN  TI+             + + I+G +    +ED     
Sbjct: 267 FQNEKAFDAFKQMLTHGLYPNSATITTLLPACTTLANMKHGKEIHGYSVVTGLEDHGFVR 326

Query: 220 ---------------AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
                          A+++    P   + ++NS++  Y N     +A+ LF +M++    
Sbjct: 327 SALLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIFCYANHGLSDKAVELFDQMEATGEK 386

Query: 265 MDEYTFSTMLSGI--AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           +D  TF+ +L+    AGL+ L    L H    K  ++  +   + ++D+  + G++  A 
Sbjct: 387 LDHLTFTAILTACSHAGLTDLGQN-LFHLMQTKYRIEPRLEHYACMVDLLGRAGKLVEAY 445

Query: 323 SMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
            M +++    +L  W A++ G  RN    ++  +    K + +L+P++
Sbjct: 446 EMMKTMRMEPDLFVWGALL-GACRNHGNMELARI--AAKRLAELEPEN 490



 Score = 46.2 bits (108), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 83/179 (46%), Gaps = 12/179 (6%)

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G+++H+ ++  G+     +A+ L+  Y +CG+V  A  +F  + ++++  W  MI  
Sbjct: 32  LCGGIVLHAHLVTSGIARLTRIAAKLVSFYVECGKVLDARKVFDEMPKRDISGWVVMIGA 91

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
            AR G   + +++F ++     L+ D     ++L A  +       +   F  M     +
Sbjct: 92  CARYGYYQESLDIFREMNK-EGLKLDVFIVPSLLKASRNL------LDREFGKMIHCLVL 144

Query: 403 KPTVEH----CCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
           K + E       S+I +  + GEV  A+++  +LG     VV+ A++S     S  D A
Sbjct: 145 KCSFESDAFIVSSLIDMYSKFGEVVNARKVFDDLGEQDL-VVFNAMISGYANNSQADEA 202


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 145/504 (28%), Positives = 255/504 (50%), Gaps = 37/504 (7%)

Query: 14  SDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWN 73
           S LGW    +QLH  +++S    + +V++A++  Y K     +A ++F  +   + VSW 
Sbjct: 308 SSLGWG---KQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWT 364

Query: 74  SLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY 133
            LI G++Q G + ++L LF ++    +  D ++  + ++ C     + L   +HS  +K 
Sbjct: 365 VLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKS 424

Query: 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL 193
              R VVI+N LI MY KCG                               NL+ A    
Sbjct: 425 GHTRAVVISNSLISMYAKCG-------------------------------NLQNAESIF 453

Query: 194 HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
             +   D +S+  ++   +Q G+I  A      M + N  +WN++L  Y+      + L 
Sbjct: 454 SSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLK 513

Query: 254 LFGEM-QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312
           ++  M   KDV  D  T+ T+  G A + A   G  I    +K GL     V +A++ MY
Sbjct: 514 MYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMY 573

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
           SKCG++  A  +F  L RK+LV+WNAMITGY+++G   + IE+F+ +   +  +PD +++
Sbjct: 574 SKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLK-KGAKPDYISY 632

Query: 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
           + VL++CSH+ +   +   YF+ + +D+ + P +EH   M+ L+ + G +  A+ +I E+
Sbjct: 633 VAVLSSCSHSGL-VQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEM 691

Query: 433 GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVAS 492
                  VW ALLSA     + ++A ++A  +  L+      Y++L  +Y   G    ++
Sbjct: 692 PMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSA 751

Query: 493 VMRNFMRERGLRKEAGCSWIEVEN 516
            +R  MR++G++K  G SW+EV+N
Sbjct: 752 QVRKLMRDKGIKKNPGYSWMEVKN 775



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 178/346 (51%), Gaps = 33/346 (9%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV     +M  Y K+ SL+DA ++F  +P+  V SWN+L+SGY QSG++  A+  FV + 
Sbjct: 94  NVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMR 153

Query: 97  RS-EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
           RS +   +A++F  A+ +CG LG  ++ + +   + K+  +    +A  ++DM+ +CG+V
Sbjct: 154 RSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAV 213

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFG 215
           + A   F +                               +  P     N ++ G A+  
Sbjct: 214 DFASKQFSQ-------------------------------IERPTVFCRNSMLAGYAKSY 242

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275
            ++ A+ +  SMP  +  SWN +++      R  EAL +  +M ++ V +D  T+++ L+
Sbjct: 243 GVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLT 302

Query: 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335
             A LS+L WG  +H+ VI+        VASA++++Y+KCG  + A  +F SL  +N V+
Sbjct: 303 ACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVS 362

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
           W  +I G+ + G  ++ +ELF Q++    +  D      +++ CS+
Sbjct: 363 WTVLIGGFLQYGCFSESLELFNQMRA-ELMTVDQFALATIISGCSN 407



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 108/209 (51%), Gaps = 5/209 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      L R  +D+G +    Q+  + +K G + +  V  A++  Y K   +++A K+
Sbjct: 526 PDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKI 585

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  +VSWN++I+GY Q G  ++A+ +F ++ +     D  S+ + L++C   G +
Sbjct: 586 FDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLV 645

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNSVIA 178
           Q G      + + +++  G+   +C++D+  + G++ +A  +  EM  K     W ++++
Sbjct: 646 QEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLS 705

Query: 179 ASARNGN---LELAFGFLHRLPNPDTISY 204
           A   +GN    ELA   L  L +PD+  Y
Sbjct: 706 ACKTHGNNELAELAAKHLFDLDSPDSGGY 734



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 113/255 (44%), Gaps = 31/255 (12%)

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF-GE 164
           +   AL +CG  G+L    A+H ++V   L   V + N L+  Y  CG++ DA G+  G+
Sbjct: 30  ALADALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGD 89

Query: 165 MIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMIL 224
           + + ++I+ N ++   A+ G+L  A     R+P  D  S+N +++G  Q G   DA+   
Sbjct: 90  ITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESF 149

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
            SM     S              +P A                +TF   +     L    
Sbjct: 150 VSMRRSGDS--------------LPNA----------------FTFGCAMKSCGALGWHE 179

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
             + +   + K G      VA+ ++DM+ +CG V+ A   F  + R  +   N+M+ GYA
Sbjct: 180 VALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYA 239

Query: 345 RNGDLTKVIELFEQL 359
           ++  +   +ELFE +
Sbjct: 240 KSYGVDHALELFESM 254


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 165/558 (29%), Positives = 286/558 (51%), Gaps = 44/558 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +++A S+L    Y + LH   L S F S++FV  +L+  Y     + +A K+
Sbjct: 120 PDNYTYPFVIKACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKV 179

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + + SVVSWN++I+GY ++G    AL +F ++  S +  D  S  S L ACG L  L
Sbjct: 180 FDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKEL 239

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           ++G  +H  + +  L + +V +N L+DMY KCGS+++A  VF  M+++D++SW S+I   
Sbjct: 240 EVGRRVHGLVEEKVLGKKIV-SNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGY 298

Query: 181 ARNGNLELAFGFLHRL------PNPDTIS---------------------------YNEV 207
             NG+ + A      +      PN  TI+                           Y+EV
Sbjct: 299 ILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEV 358

Query: 208 ------INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                 I+  A+   +  +  + +      +  WN++L+G V+     EA+ LF +M  +
Sbjct: 359 AVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLME 418

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V ++  T +++L     L+ L     I+S +++ G  ++I VA++L+D+YSKCG +E A
Sbjct: 419 GVEINAATCNSLLPAYGILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESA 478

Query: 322 DSMFRSLCR--KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
             +F ++    +++  W+ +I GY  +G     + LF+Q+     ++P+ VTF +VL +C
Sbjct: 479 HKIFNTIPVDVQDIFVWSIIIAGYGMHGHGETAVSLFKQM-VQSGVKPNDVTFTSVLQSC 537

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH  +  D +   F+ M KD+   P  +H   M+ L+G+ G +  A  +I+ + F     
Sbjct: 538 SHAGMVDDGLY-LFKFMLKDHQTIPNDDHYTCMVDLLGRAGRMDEAYDLIKTMPFMPGHA 596

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           VW ALL A     ++++  ++A  + +LE  +   YV+L  LY + G W+ A  +R  M 
Sbjct: 597 VWGALLGACVMHENVELGEVAARWLFELEPGNTGNYVLLAKLYAALGRWEDAENVRQRMD 656

Query: 500 ERGLRKEAGCSWIEVENV 517
           + GLRK    S IE   V
Sbjct: 657 DIGLRKAPAHSLIEAGTV 674



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 184/379 (48%), Gaps = 40/379 (10%)

Query: 20  TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79
           T  +QLH +++ SG LS + + + L+  Y     + +A K+F E+ Q   + +N +I  Y
Sbjct: 38  TSTKQLHAHLITSGLLS-IDIRSVLVATYAHCGYVHNARKLFDELRQRGTLLYNFMIKMY 96

Query: 80  VQSGKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
           +  G Y +A+ +F+E L   +   D Y++   + AC +L  ++ G  +H   +       
Sbjct: 97  IAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLLVEYGRVLHGLTLVSKFGSH 156

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG--NLEL-------- 188
           + + N L+ MY  CG VE+A  VF  M +K ++SWN++I    +NG  N  L        
Sbjct: 157 LFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVD 216

Query: 189 ---------------AFGFLHRLPN-------------PDTISYNEVINGIAQFGDIEDA 220
                          A G+L  L                  I  N +++  A+ G +++A
Sbjct: 217 SGVEIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLGKKIVSNALVDMYAKCGSMDEA 276

Query: 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280
            ++  +M   +  SW S++ GY+       AL LF  MQ + +  +  T + +L   A L
Sbjct: 277 RLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASL 336

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           + L  G  +H  V+KQ L + + V ++L+DMY+KC  + ++ S+F    RK  V WNA++
Sbjct: 337 NNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALL 396

Query: 341 TGYARNGDLTKVIELFEQL 359
           +G   N   T+ I LF+++
Sbjct: 397 SGCVHNKLATEAIGLFKKM 415



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 131/297 (44%), Gaps = 40/297 (13%)

Query: 212 AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTF 270
           A  G + +A  +   +    +  +N ++  Y+ +    EA+ +F EM  SKD   D YT+
Sbjct: 66  AHCGYVHNARKLFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTY 125

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR 330
             ++   + L  + +G ++H   +     + + V ++LL MY  CG+VE A  +F ++  
Sbjct: 126 PFVIKACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKE 185

Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
           K++V+WN MI GY +NG     + +F Q+     ++ D  + ++VL AC           
Sbjct: 186 KSVVSWNTMINGYFKNGFANTALVVFNQMVD-SGVEIDGASVVSVLPACG---------- 234

Query: 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450
            Y + +     +   VE      +++G+K                   +V  AL+     
Sbjct: 235 -YLKELEVGRRVHGLVEE-----KVLGKK-------------------IVSNALVDMYAK 269

Query: 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEA 507
           C  +D AR+    +++ +  S   +  + N Y  +G+   A  +   M+  GLR  +
Sbjct: 270 CGSMDEARLVFDNMVERDVVS---WTSMINGYILNGDAKSALSLFKIMQIEGLRPNS 323



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 1/111 (0%)

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           + ++L       +LT    +H+ +I  GL  SI + S L+  Y+ CG V  A  +F  L 
Sbjct: 24  YQSLLKHYGAAQSLTSTKQLHAHLITSGL-LSIDIRSVLVATYAHCGYVHNARKLFDELR 82

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           ++  + +N MI  Y   GD  + +++F ++   +D  PD+ T+  V+ ACS
Sbjct: 83  QRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACS 133


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 156/556 (28%), Positives = 258/556 (46%), Gaps = 65/556 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL A + LG      QLH Y+ K+G  S+  +  +L+  Y K   +  A  +
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    + +VV WN ++  + Q     K+  LF +++ + I  + +++   L  C   G +
Sbjct: 302 FNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEI 361

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IHS  VK   E  + ++  LIDMY K G +E A  V   + +KD++SW S+IA  
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421

Query: 181 ARNGNLELAFGFLHRLPN----PDTIS--------------------------------- 203
            ++   + A      +      PD I                                  
Sbjct: 422 VQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDV 481

Query: 204 --YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
             +N ++N  A+ G I +A      +   +  +WN +++G+       EAL +F  M   
Sbjct: 482 SIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQS 541

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            V  + +TF + LS  A L+ +  G  IH+ VIK G      V +AL+ +Y KCG  E A
Sbjct: 542 GVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDA 601

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
              F  +  +N V+WN +IT  +++G   + ++ F+Q+K                     
Sbjct: 602 KMEFSEMSERNEVSWNTIITSCSQHGRGLEALDFFDQMKK-------------------- 641

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
                 +   YF+SM+  YGI+P  +H   +I + G+ G++ RA++ + E+   +  +VW
Sbjct: 642 ------EGLSYFKSMSDKYGIRPRPDHYACVIDIFGRAGQLDRAKKFVEEMPIAADAMVW 695

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
           R LLSA     +++V  ++A  +++LE      YV+L N Y   G W     +R  MR+R
Sbjct: 696 RTLLSACKVHKNIEVGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMRDR 755

Query: 502 GLRKEAGCSWIEVENV 517
           G+RKE G SWIEV+NV
Sbjct: 756 GVRKEPGRSWIEVKNV 771



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 204/417 (48%), Gaps = 40/417 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  YVL  +L + +        + +H    K GF S  FV  AL+  Y +  S   A ++
Sbjct: 141 PTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNALITLYLRCGSFRLAERV 200

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P    V++N+LISG+ Q      AL +F E++ S +  D  + +S LAAC  LG L
Sbjct: 201 FYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDL 260

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           Q G  +HS + K  +    ++   L+D+Y KCG VE A+ +F      +++ WN ++ A 
Sbjct: 261 QKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVAF 320

Query: 181 ARNGNLELAFGFLHRL------PNPDT-------------ISYNEVINGI---------- 211
            +  +L  +F    ++      PN  T             I   E I+ +          
Sbjct: 321 GQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFESDM 380

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     +++G +E A  +L  +   +  SW S++ GYV      +AL  F EMQ  
Sbjct: 381 YVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALAAFKEMQKC 440

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  D    ++ +SG AG+ A+  G+ IH+ V   G    + + +AL+++Y++CG++  A
Sbjct: 441 GIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVSIWNALVNLYARCGRIREA 500

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
            S F  +  K+ +TWN +++G+A++G   + +++F ++     ++ +  TF++ L+A
Sbjct: 501 FSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQ-SGVKHNVFTFVSALSA 556



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 183/396 (46%), Gaps = 40/396 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           ++H   +  G   +  V   L+  Y K   +  A ++F E+     VSW +++SGY Q+G
Sbjct: 63  EIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
              +AL L+ ++ R+ +    Y  +S L++C +      G ++H++  K        + N
Sbjct: 123 LGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGN 182

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NP 199
            LI +Y +CGS   A  VF +M  +D +++N++I+  A+  + E A      +     +P
Sbjct: 183 ALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSP 242

Query: 200 DTISYNEVINGIAQF-----------------------------------GDIEDAIMIL 224
           D ++ + ++   A                                     GD+E A++I 
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIF 302

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
           +     N   WN IL  +   N + ++  LF +MQ+  +  +++T+  +L        + 
Sbjct: 303 NLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEID 362

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  IHS  +K G ++ + V+  L+DMYSK G +E A  +   L  K++V+W +MI GY 
Sbjct: 363 LGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYV 422

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           ++      +  F++++    + PD++   + ++ C+
Sbjct: 423 QHEYCKDALAAFKEMQKC-GIWPDNIGLASAISGCA 457



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 184/397 (46%), Gaps = 43/397 (10%)

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC-GQLGSLQLGMAIHSKIVKYS 134
           ++G++      K L+LF +  R         F  AL AC G     Q+   IH+K +   
Sbjct: 13  LAGFLAQEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVPEIHAKAITRG 72

Query: 135 LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA---FG 191
           L +  ++ N LID+Y K G V  A  VF E+  +D +SW ++++  A+NG  E A   + 
Sbjct: 73  LGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALWLYR 132

Query: 192 FLHR---LPNP---------------------------------DTISYNEVINGIAQFG 215
            +HR   +P P                                 +T   N +I    + G
Sbjct: 133 QMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNALITLYLRCG 192

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275
               A  +   MP  ++ ++N++++G+        AL +F EMQS  +  D  T S++L+
Sbjct: 193 SFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLA 252

Query: 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335
             A L  L  G  +HS + K G+ +  ++  +LLD+Y KCG VE A  +F    R N+V 
Sbjct: 253 ACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVL 312

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFES 395
           WN ++  + +  DL K  ELF Q++T   ++P+  T+  +L  C+ T    D + E   S
Sbjct: 313 WNLILVAFGQINDLAKSFELFCQMQTA-GIRPNQFTYPCILRTCTCTG-EID-LGEQIHS 369

Query: 396 MTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
           ++   G +  +     +I +  + G + +A+R++  L
Sbjct: 370 LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEML 406


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 140/516 (27%), Positives = 259/516 (50%), Gaps = 41/516 (7%)

Query: 39  FVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS 98
           F+  +++  Y K  SLADA K+F E+ + ++VSWN++IS Y ++G + K   +F  +   
Sbjct: 46  FLENSVLKMYCKCGSLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLEL 105

Query: 99  EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
           E   +  ++   L +      L++G  IHS  ++  L     +   + +MY KCG +E A
Sbjct: 106 ETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGA 165

Query: 159 IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP------------------- 199
             VF +M +K+ ++W  ++    +      A     ++ N                    
Sbjct: 166 ELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGL 225

Query: 200 DTISYNEVING-IAQFG-------------------DIEDAIMILSSMPSPNSSSWNSIL 239
           + +++   I+G I + G                   ++E A      +  PN  SW++++
Sbjct: 226 EELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALI 285

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           TGY       EAL  F  ++++ V ++ +T++++    + L+    G   H+  IK  L 
Sbjct: 286 TGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLV 345

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
           A     SA++ MYS+CG+++ A  +F S+   + V W A+I GYA  G+  + ++LF ++
Sbjct: 346 AYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRM 405

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           +    ++P++VTF+ VL ACSH+ +  +   +Y ESM+ +YG+  T++H   M+ +  + 
Sbjct: 406 QDC-GVRPNAVTFIAVLTACSHSGLVIEG-RQYLESMSSNYGVATTIDHYDCMVDIYSRA 463

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G +  A  +IR + F    + W+ LL       +L++  ++A  + +L+ +    Y+++ 
Sbjct: 464 GFLQEALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMF 523

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           NLY S G W  A+ +R  M ER LRKE  CSWI V+
Sbjct: 524 NLYASFGKWKEAANVRKMMAERNLRKELSCSWITVK 559



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 161/325 (49%), Gaps = 40/325 (12%)

Query: 95  LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
           +E + I     S+     ACG++ SL  G   H ++ +        + N ++ MY KCGS
Sbjct: 1   MEDAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGS 60

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAF-------------------GFLHR 195
           + DA  VF EM +++++SWN++I+A A NG  +  F                   GFL  
Sbjct: 61  LADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRS 120

Query: 196 LPNPDTISYNEVINGIA--------------------QFGDIEDAIMILSSMPSPNSSSW 235
           L NP  +   + I+  A                    + G +E A ++   M   N+ +W
Sbjct: 121 LLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAW 180

Query: 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
             I+ GY    R  +AL LF +M ++ V +DEY FS +L   AGL  L +G  IH  ++K
Sbjct: 181 TGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVK 240

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
            GL++ + V + L+D Y KC  +E A   F  +   N V+W+A+ITGY + G+  + ++ 
Sbjct: 241 LGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKT 300

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACS 380
           FE L+T R +  +S T+ ++  ACS
Sbjct: 301 FESLRT-RSVDINSFTYTSIFQACS 324



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 162/361 (44%), Gaps = 41/361 (11%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H + ++SG  SN  V+TA+   Y K   L  A  +F ++ + + V+W  ++ GY Q+
Sbjct: 131 KQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQA 190

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
            +   AL LF ++    +  D Y F+  L AC  L  L  G  IH  IVK  LE  V + 
Sbjct: 191 ERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVG 250

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
             L+D Y KC ++E A   F  + + + +SW+++I    + G  E A      L     +
Sbjct: 251 TPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVD 310

Query: 199 PDTISYNEVI---NGIAQF--------------------------------GDIEDAIMI 223
            ++ +Y  +    + +A F                                G ++ A  +
Sbjct: 311 INSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRV 370

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
             S+  P++ +W +I+ GY  +   PEAL LF  MQ   V  +  TF  +L+  +    +
Sbjct: 371 FESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLV 430

Query: 284 TWG-MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMIT 341
             G   + S     G+  +I     ++D+YS+ G ++ A  + RS+    + ++W  ++ 
Sbjct: 431 IEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLG 490

Query: 342 G 342
           G
Sbjct: 491 G 491



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 164/342 (47%), Gaps = 15/342 (4%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +EYV   +L+A + L    + +Q+H +I+K G  S V V T L+ FY K ++L  A K F
Sbjct: 211 DEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAF 270

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             I +P+ VSW++LI+GY Q G++ +AL  F  L    +  +++++TS   AC  L    
Sbjct: 271 EWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFN 330

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G   H+  +K SL       + +I MY +CG ++ A  VF  + D D ++W ++IA  A
Sbjct: 331 SGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYA 390

Query: 182 RNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PNS 232
             GN   A     R+ +    P+ +++  V+   +  G + +    L SM S        
Sbjct: 391 YQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTI 450

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
             ++ ++  Y     + EAL L   ++S     D  ++  +L G      L  G L    
Sbjct: 451 DHYDCMVDIYSRAGFLQEALEL---IRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAEN 507

Query: 293 VIKQGLDASIVVASALL-DMYSKCGQVEIADSMFRSLCRKNL 333
           + +  LD        L+ ++Y+  G+ + A ++ + +  +NL
Sbjct: 508 LFQ--LDPEDTAGYILMFNLYASFGKWKEAANVRKMMAERNL 547


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 153/535 (28%), Positives = 269/535 (50%), Gaps = 42/535 (7%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           QLH  ++ SG      +  +L+  Y K     DA K+F  + +   V+WN +ISGYVQSG
Sbjct: 256 QLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSG 315

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
              ++L  F E+  S +  DA +F+S L +  +  +L+    IH  I+++S+   + + +
Sbjct: 316 LMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTS 375

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRL--- 196
            LID Y KC  V  A  +F +    D++ + ++I+    NG     LE+ F +L ++   
Sbjct: 376 ALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEM-FRWLVKVKIS 434

Query: 197 PNPDT-ISYNEVINGI--------------------------------AQFGDIEDAIMI 223
           PN  T +S   VI G+                                A+ G +  A  I
Sbjct: 435 PNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEI 494

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +   +  SWNS++T     +    A+ +F +M    +  D  + S  LS  A L + 
Sbjct: 495 FGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSE 554

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
           ++G  IH  +IK  L   +   S L+DMY+KCG ++ A ++F ++  KN+V+WN++I  Y
Sbjct: 555 SFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSWNSIIAAY 614

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
             +G L   + LF ++      +PD +TFL +++ C H     D+   +F SMT+DYGI+
Sbjct: 615 GNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVG-DVDEGVRFFRSMTQDYGIQ 673

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           P  EH   ++ L G+ G +  A   ++ + F     VW  LL AS    ++++A+++++ 
Sbjct: 674 PQQEHYACVVDLFGRAGRLSEAYETVKSMPFPPDAGVWGTLLGASRLHKNVELAKVASSR 733

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVA 518
           ++ L+  +   YV++ N + + G W+  + +R+ M+ER ++K  G SWIE+  + 
Sbjct: 734 LMDLDPWNSGYYVLISNAHANTGEWESVTKVRSLMKEREVQKIPGYSWIEINKIT 788



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/456 (24%), Positives = 219/456 (48%), Gaps = 43/456 (9%)

Query: 33  GFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF 92
           G   N FV+++L+  Y +   +  A K+F  + Q   V WN +++GY + G     +  F
Sbjct: 164 GMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGF 223

Query: 93  VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC 152
             +   +I  +A +F   L+ C     + LG+ +H  +V   L+    I N L+ MY KC
Sbjct: 224 SLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKC 283

Query: 153 GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVI 208
           G  +DAI +F  M   D ++WN +I+   ++G +E +  F + + +    PD I+++ ++
Sbjct: 284 GRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLL 343

Query: 209 NGIAQFGDIE-------------------------DAIM----------ILSSMPSPNSS 233
             +++F ++E                         DA            I S   S +  
Sbjct: 344 PSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVV 403

Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCV 293
            + ++++GY++     +AL +F  +    +  +E T  ++L  I GL AL  G  +H  +
Sbjct: 404 VFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFI 463

Query: 294 IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353
           IK+G D    +  A++DMY+KCG++ +A  +F  L ++++V+WN+MIT  A++ + +  I
Sbjct: 464 IKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAI 523

Query: 354 ELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMI 413
           ++F Q+  V  +  D V+    L+AC+  ++P +   +        + +   V    ++I
Sbjct: 524 DIFRQM-GVSGICFDCVSISAALSACA--NLPSESFGKAIHGFMIKHSLALDVYSESTLI 580

Query: 414 RLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
            +  + G +  A  +   +   +  V W ++++A G
Sbjct: 581 DMYAKCGNLKAAMNVFDTMKEKNI-VSWNSIIAAYG 615



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 161/321 (50%), Gaps = 28/321 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  L  +L     L      ++LH +I+K GF +   +  A++  Y K   +  A+++
Sbjct: 435 PNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEI 494

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  +VSWNS+I+   QS     A+++F ++  S I  D  S ++AL+AC  L S 
Sbjct: 495 FGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSE 554

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G AIH  ++K+SL   V   + LIDMY KCG+++ A+ VF  M +K+I+SWNS+IAA 
Sbjct: 555 SFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSWNSIIAAY 614

Query: 181 ARNGNLELAFGFLHRL-----PNPDTISYNEVINGIAQFGDIEDAIMILSSMP-----SP 230
             +G L+ +    H +       PD I++ E+I+     GD+++ +    SM       P
Sbjct: 615 GNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQP 674

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
               +  ++  +    R+ EA   +  ++S   P D               A  WG L+ 
Sbjct: 675 QQEHYACVVDLFGRAGRLSEA---YETVKSMPFPPD---------------AGVWGTLLG 716

Query: 291 SCVIKQGLDASIVVASALLDM 311
           +  + + ++ + V +S L+D+
Sbjct: 717 ASRLHKNVELAKVASSRLMDL 737



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 192/410 (46%), Gaps = 44/410 (10%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ-- 66
           LL+  S+L      +Q+H +++ +    + +    ++G Y    S ++  KMF  +    
Sbjct: 37  LLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLDSRL 96

Query: 67  PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ----- 121
            S+  WNS+IS +V+ G   +AL  + ++    +  D  +F   + AC  L + +     
Sbjct: 97  SSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIEFL 156

Query: 122 ------LGMA----IHSKIVKYSLERG----------------VVIANCLIDMYGKCGSV 155
                 LGM     + S ++K  LE G                 VI N +++ Y KCG+ 
Sbjct: 157 SDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGAS 216

Query: 156 EDAIGVFGEM----IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISY-----NE 206
           +  I  F  M    I  + ++++ V++  A    ++L    LH L     + +     N 
Sbjct: 217 DSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQ-LHGLVVVSGLDFEGSIKNS 275

Query: 207 VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
           +++  ++ G  +DAI +   M   ++ +WN +++GYV    + E+L  F EM S  V  D
Sbjct: 276 LLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPD 335

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
             TFS++L  ++    L +   IH  +++  +   I + SAL+D Y KC  V +A  +F 
Sbjct: 336 AITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFS 395

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
                ++V + AMI+GY  NG     +E+F  L  V+ + P+ +T +++L
Sbjct: 396 QCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVK-ISPNEITLVSIL 444



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 173/370 (46%), Gaps = 43/370 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      LL + S      YC+Q+HCYI++     ++F+++AL+  Y K   ++ A K+
Sbjct: 334 PDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKI 393

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +     VV + ++ISGY+ +G    AL +F  L + +I  +  +  S L   G L +L
Sbjct: 394 FSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLAL 453

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +H  I+K   +    I   +IDMY KCG +  A  +FG +  +DI+SWNS+I   
Sbjct: 454 KLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRC 513

Query: 181 ARNGNLELAFGFLHR----------------------LPNP-----------------DT 201
           A++ N   A     +                      LP+                  D 
Sbjct: 514 AQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDV 573

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM--Q 259
            S + +I+  A+ G+++ A+ +  +M   N  SWNSI+  Y N  ++ ++L LF EM  +
Sbjct: 574 YSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEK 633

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           S + P D+ TF  ++S    +  +  G+    S     G+       + ++D++ + G++
Sbjct: 634 SGNRP-DQITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRL 692

Query: 319 EIADSMFRSL 328
             A    +S+
Sbjct: 693 SEAYETVKSM 702



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 98/201 (48%), Gaps = 4/201 (1%)

Query: 182 RNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS--SWNSIL 239
           R G    AF  ++R+   D+ +   ++   A  G   +   +   + S  SS   WNSI+
Sbjct: 48  RQGKQVHAFVIVNRISG-DSYTDERILGMYAMCGSFSNCGKMFYRLDSRLSSIRPWNSII 106

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           + +V    + +AL  + +M    V  D  TF  ++     L        +   V   G+D
Sbjct: 107 SSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIEFLSDTVSSLGMD 166

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            +  VAS+L+  Y + G++++A  +F  + +K+ V WN M+ GYA+ G    VI+ F  +
Sbjct: 167 CNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLM 226

Query: 360 KTVRDLQPDSVTFLNVLAACS 380
           + +  + P++VTF  VL+ C+
Sbjct: 227 R-MDQISPNAVTFDCVLSVCA 246



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 6/188 (3%)

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
            S +L   + L+ L  G  +H+ VI   +         +L MY+ CG       MF  L 
Sbjct: 34  LSLLLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLD 93

Query: 330 RK--NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387
            +  ++  WN++I+ + R G L + +  + ++     + PD  TF  ++ AC    +   
Sbjct: 94  SRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCF-GVSPDVSTFPCLVKAC--VALKNF 150

Query: 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
           K  E+        G+        S+I+   + G++  A ++   +      V+W  +L+ 
Sbjct: 151 KGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRV-LQKDCVIWNVMLNG 209

Query: 448 SGACSDLD 455
              C   D
Sbjct: 210 YAKCGASD 217


>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
 gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 157/521 (30%), Positives = 265/521 (50%), Gaps = 51/521 (9%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +++ L  +L+A S +G      Q+H  + K  F S++F+   L+ FY K   L  A ++F
Sbjct: 126 DKFTLSLVLKACSRVGLVKEGMQIHGLLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVF 185

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLF--VELERSEIYADAYSFTSALAACGQLGS 119
             +P+   VS+NS+I GYV+ G+   A  +F  + LE                       
Sbjct: 186 DRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLE----------------------- 222

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV----FGEMIDKDIISWNS 175
                           ER ++  N LI  Y +    ED I V    F +M ++D+ISWNS
Sbjct: 223 ----------------ERNLISWNSLIRGYAQS---EDGILVAWQLFAKMPERDLISWNS 263

Query: 176 VIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSW 235
           +I    + G +E A G   R+PN D +S+  +I+G A+ G ++ A  +   MP  +  ++
Sbjct: 264 MIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAY 323

Query: 236 NSILTGYVNRNRVPEALHLFGEMQSK-DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
           N+++ GYV      EAL +F  MQS  +  +D  T    LS IA L  +  G+ IH  + 
Sbjct: 324 NAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIE 383

Query: 295 KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
           + G      +  AL+DMYSKCG +E A  +F ++  K++  WNA+I G A +G      +
Sbjct: 384 EIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGELAFD 443

Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
              +++ +R ++PD +TF+ +L AC H  +  + +   FE M + + ++P ++H   M+ 
Sbjct: 444 FLMEMERMR-VEPDDITFIGLLNACGHAGLVKEGMM-CFELMRRVHKVEPKLQHYGCMVD 501

Query: 415 LMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474
           ++G+ G +  A+  + E+ F    V+WR+LLSA       +V +  A  +++L+  S   
Sbjct: 502 ILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQPVAENLMRLDSPSPSS 561

Query: 475 YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           YV+  N+Y   G W+    +R  M+++ L+K  GCSWIE+E
Sbjct: 562 YVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWIELE 602



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294
           WN+I+  Y + +   EA+ L   M       D++T S +L   + +  +  GM IH  + 
Sbjct: 95  WNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGLLK 154

Query: 295 KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG--DLTKV 352
           K    + + + + L+  Y KCG +  A  +F  + +++ V++N+MI GY + G  DL +V
Sbjct: 155 KLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARV 214

Query: 353 I 353
           +
Sbjct: 215 V 215


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 150/522 (28%), Positives = 256/522 (49%), Gaps = 37/522 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL-SNVFVSTALMGFYRKINSLADAHK 59
           P+ +    LL+  +      Y + L  + +  GFL SN+FV    +  +     +  A K
Sbjct: 133 PDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARK 192

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE--IYADAYSFTSALAACGQL 117
           +F       VV+WN ++SGY +  +Y ++  LF+E+E+    +  ++ +    L+AC +L
Sbjct: 193 IFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKL 252

Query: 118 GSLQLGMAIHSKIVKYSL-ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
             L  G  I++K +K  + E  +++ N LIDM+  CG                       
Sbjct: 253 KDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGE---------------------- 290

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
                    ++ A G    +   D IS+  ++ G A    I+ A      MP  +  SW 
Sbjct: 291 ---------MDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWT 341

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           +++ GY+  NR  E L LF +MQ  +V  DE+T  ++L+  A L AL  G    + + K 
Sbjct: 342 AMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKN 401

Query: 297 GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
            +     + +AL+DMY KCG VE A  +F  + +K+  TW AMI G A NG   + + +F
Sbjct: 402 KIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMF 461

Query: 357 EQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLM 416
             +     + PD +T++ V+ AC+H  +   K   +F +M   +GIKP + H   M+ L+
Sbjct: 462 SYMLEA-SVTPDEITYIGVMCACTHVGL-VAKGKHFFSNMAVQHGIKPNLTHYGCMVDLL 519

Query: 417 GQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476
           G+ G +  A  +I  +      +VW +LL A     ++ +A ++A E+++LE ++  VYV
Sbjct: 520 GRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYV 579

Query: 477 MLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVA 518
           +LCN+Y +   W     +R  M ERG++K  GCS +E+  + 
Sbjct: 580 LLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIV 621



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 6/247 (2%)

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           GD+  A  +   +P P+   WN+++ GY   N     + L+  M   ++  D +TF  +L
Sbjct: 83  GDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142

Query: 275 SGIAGLSALTWG-MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
            G     AL +G +L++  VI   LD+++ V    + ++S CG V  A  +F       +
Sbjct: 143 KGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEV 202

Query: 334 VTWNAMITGYARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVLAACSH-TDIPFDKVSE 391
           VTWN +++GY R     +   LF E  K    + P+SVT + +L+ACS   D+   K   
Sbjct: 203 VTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKC-- 260

Query: 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC 451
            +    K+  ++P +    ++I +    GE+  A+ +  E+      + W ++++     
Sbjct: 261 IYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDV-ISWTSIVTGFANT 319

Query: 452 SDLDVAR 458
             +D+AR
Sbjct: 320 CRIDLAR 326


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 152/559 (27%), Positives = 281/559 (50%), Gaps = 52/559 (9%)

Query: 6   LFHLLRASSDLGWDTYCQQLHCY-ILKSGFLSNVFVS-TALMGFYRKINSLADAHKMFVE 63
           L  LL+ S+D       + +H + I+ S    N  +   +L+ FY K+N ++ AH +F  
Sbjct: 32  LIKLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDR 91

Query: 64  IPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYADAYSFTSALAACGQLGSLQL 122
           +P+ +VVSW++L++GY+ +G   K + L  ++     +  + Y    A+++C   G ++ 
Sbjct: 92  MPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEE 151

Query: 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR 182
           G   H  ++K        + N L+ MY KC  V+DA+GV+ E+   DI+++NS++++   
Sbjct: 152 GRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVE 211

Query: 183 NGNLELAFGFLHRLPNPDTISYNEV--------------------INGIAQFGDIE-DAI 221
           NG L      L  + + +++ +++V                    ++G     D+E DA 
Sbjct: 212 NGYLREGLEVLRSMVS-ESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAY 270

Query: 222 M-------------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
           +                   +   + S N   W +++          EAL+LF +M+ ++
Sbjct: 271 VSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQEN 330

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
           V  +E+T++ +L+  AGLSA   G L+H    K G    ++V +AL++MY+K G +E A 
Sbjct: 331 VKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAK 390

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
            +F  +  ++++TWNAMI G++ +G   K + +F+ +    +  P+ VTF  VL+AC H 
Sbjct: 391 KVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEE-HPNYVTFTGVLSACGHL 449

Query: 383 DIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
            +    V E   Y   + K +G++P +EH   ++ L+ + G++  A+  +R        V
Sbjct: 450 GL----VQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVV 505

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
            WR LL+A     +  + R  A  V++++ +    Y +L N+Y     WD    +R  MR
Sbjct: 506 AWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMR 565

Query: 500 ERGLRKEAGCSWIEVENVA 518
           ++ ++KE G SWIE+ NV 
Sbjct: 566 DKKIKKEPGVSWIEIGNVT 584



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 181/383 (47%), Gaps = 41/383 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNEY+L   + +  D G     +Q H  +LK+GF  + +V  AL+  Y K + + DA  +
Sbjct: 131 PNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGV 190

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           + E+P   +V++NS++S  V++G  R+ L +   +    +  D  +F +A + C  L  L
Sbjct: 191 WNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDL 250

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG+ +H K++   +E    +++ +I+MYGKCG    A GVF  +  ++++ W +V+A+ 
Sbjct: 251 RLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASC 310

Query: 181 ARNGNLELAFGFLHRLPNPDTISY------------------------------------ 204
            +NG  E A     ++   +  S                                     
Sbjct: 311 FQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHV 370

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +IN  A+ GDIE A  + S M   +  +WN+++ G+ +     +AL +F +M + 
Sbjct: 371 MVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAA 430

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEI 320
           +   +  TF+ +LS    L  +  G      ++KQ G+   +   + ++ + SK GQ+  
Sbjct: 431 EEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNE 490

Query: 321 ADSMFRSLCRK-NLVTWNAMITG 342
           A +  R+   K ++V W  ++  
Sbjct: 491 ARNFMRTAPVKWDVVAWRTLLNA 513


>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 595

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 147/514 (28%), Positives = 257/514 (50%), Gaps = 37/514 (7%)

Query: 38  VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF-VELE 96
           +F ++A+        +   A  +F  +  P     N++I  Y +   +  AL  +  ++ 
Sbjct: 40  LFATSAIKKLCSHSVTFPRATFLFDHLHHPDAFHCNTIIRAYARKPDFPAALRFYYCKML 99

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG------ 150
              +  + Y+F   +  C  +GS + G+  H++IVK+     +   N LI MY       
Sbjct: 100 ARSVPPNHYTFPLLIKVCTDIGSFREGLKGHARIVKFGFGSDLFARNSLIRMYSVFGRIG 159

Query: 151 -------------------------KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN 185
                                    K G +  A  VF EM D+D++SWN +IA     G+
Sbjct: 160 NARMVFDESCWLDLVSYNSMIDGYVKNGEIGAARKVFNEMPDRDVLSWNCLIAGYVGVGD 219

Query: 186 LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSP--NSSSWNSILTGYV 243
           L+ A      +P  D +S+N +I+G A+ G++  A+     MP+   N  SWNS+L  + 
Sbjct: 220 LDAANELFETIPERDAVSWNCMIDGCARVGNVSLAVKFFDRMPAAVRNVVSWNSVLALHA 279

Query: 244 NRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
                 E L LFG+M + ++   +E T  ++L+  A L  L+ GM +HS +    +   +
Sbjct: 280 RVKNYGECLMLFGKMVEGREAVPNEATLVSVLTACANLGKLSMGMWVHSFIRSNNIKPDV 339

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362
           ++ + LL MY+KCG +++A  +F  +  +++V+WN+MI GY  +G   K +ELF +++  
Sbjct: 340 LLLTCLLTMYAKCGAMDLAKGVFDEMPVRSVVSWNSMIMGYGLHGIGDKALELFLEMEKA 399

Query: 363 RDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422
              QP+  TF++VL+AC+H  +  +    YF+ M + Y I+P VEH   M+ L+ + G V
Sbjct: 400 GQ-QPNDATFISVLSACTHAGMVMEG-WWYFDLMQRVYKIEPKVEHYGCMVDLLARAGLV 457

Query: 423 WRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482
             ++ +IR +   +   +W ALLS      D ++  I A   I+LE      Y++L N+Y
Sbjct: 458 ENSEELIRMVPVKAGSAIWGALLSGCSNHLDSELGEIVAKRFIELEPQDIGPYILLSNMY 517

Query: 483 TSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            + G WD    +R  ++E+GL+KEA  S + +E+
Sbjct: 518 AAKGRWDDVEHVRLMIKEKGLQKEAASSLVHLED 551



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 1/159 (0%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  L  +L A ++LG  +    +H +I  +    +V + T L+  Y K  ++  A  +
Sbjct: 302 PNEATLVSVLTACANLGKLSMGMWVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGV 361

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P  SVVSWNS+I GY   G   KAL LF+E+E++    +  +F S L+AC   G +
Sbjct: 362 FDEMPVRSVVSWNSMIMGYGLHGIGDKALELFLEMEKAGQQPNDATFISVLSACTHAGMV 421

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDA 158
             G      + + Y +E  V    C++D+  + G VE++
Sbjct: 422 MEGWWYFDLMQRVYKIEPKVEHYGCMVDLLARAGLVENS 460


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 171/590 (28%), Positives = 288/590 (48%), Gaps = 79/590 (13%)

Query: 2   NEYVLFHLLRASSDLGWD---TYCQQLHCYILKSGFLSN---VFVSTALMGFYRKINSLA 55
           + + L  +L A S L  D      ++ H + LK GFL      F   AL+  Y ++  + 
Sbjct: 168 SSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVD 227

Query: 56  DAHKMFVEIPQP------SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           DA  +F             VV+WN++IS  VQ G+  +A+ +  ++    +  D  +F S
Sbjct: 228 DAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFAS 287

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYS-LERGVVIANCLIDMYGKCGSVEDAIGVFGEMI-- 166
           AL AC +L  L LG  +H+ ++K + L     +A+ L+DMY     V  A  VF +M+  
Sbjct: 288 ALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVF-DMVPE 346

Query: 167 -DKDIISWNSVIAASARNGNLELAFGFLHRL-------PNPDTIS--------------- 203
             + +  WN++I   A+ G  E A     R+       P+  T+S               
Sbjct: 347 PSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGK 406

Query: 204 ------------------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245
                              N +++  A+ G+++ A  I + +   +  SWN+++TG V +
Sbjct: 407 EAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQ 466

Query: 246 NRVPEALHLFGEMQ-----------------SKDVPMDEYTFSTMLSGIAGLSALTWGML 288
               EA  L  EMQ                  + +P +  T  T+L G A L+A   G  
Sbjct: 467 GHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMP-NNITLMTLLPGCAALAAPARGKE 525

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           IH   ++  L++ I V SAL+DMY+KCG +  + ++F  L R+N++TWN +I  Y  +G 
Sbjct: 526 IHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGL 585

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE- 407
             + + LF+++    +  P+ VTF+  LAACSH+ +  D+  E F  M +D+G+KPT + 
Sbjct: 586 GDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGL-VDRGLELFHGMERDHGVKPTPDL 644

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV-VWRALLSASGACSDLDVARISAAEVIK 466
           H C ++ ++G+ G +  A  +I  +  G   V  W +LL A     ++++  ++A  + +
Sbjct: 645 HAC-VVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFE 703

Query: 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           LE      YV+LCN+Y++ G WD +  +R  MR +G+ KE GCSWIE++ 
Sbjct: 704 LEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDG 753



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 182/424 (42%), Gaps = 67/424 (15%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHK 59
           P+       L A S L      +++H  +LK   L+ N FV++AL+  Y     +A A +
Sbjct: 280 PDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARR 339

Query: 60  MFVEIPQPS--VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSA-LAACGQ 116
           +F  +P+PS  +  WN++I GY Q+G   +AL LF  +E     A + +  S  L AC +
Sbjct: 340 VFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACAR 399

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
                   A+H  +VK  +     + N L+DMY + G ++ A  +F  +  +D++SWN++
Sbjct: 400 SEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTL 459

Query: 177 IAASARNGNLELAF---------------------GFLHR-LPNPDTI------------ 202
           I      G+   AF                     G  HR +PN  T+            
Sbjct: 460 ITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAA 519

Query: 203 -SYNEVINGIAQFGDIEDAIMILSS--------------------MPSPNSSSWNSILTG 241
            +  + I+G A    +E  I + S+                    +P  N  +WN ++  
Sbjct: 520 PARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMA 579

Query: 242 YVNRNRVPEALHLFGEMQS-KDVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLD 299
           Y       EA+ LF EM +  +   +E TF   L+  +    +  G+ L H      G+ 
Sbjct: 580 YGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVK 639

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSL--CRKNLVTWNAMITG--YARNGDLTKVI-- 353
            +  + + ++D+  + G+++ A S+  S+    + +  W++++      RN +L +V   
Sbjct: 640 PTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAE 699

Query: 354 ELFE 357
            LFE
Sbjct: 700 RLFE 703



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 43/197 (21%)

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           D +SYN +I+ +  F   E A+  L                    R+ + E  H      
Sbjct: 132 DAVSYNSLISALCLFRQWERALDAL--------------------RDMLAEGRH------ 165

Query: 260 SKDVPMDEYTFSTML---SGIAGLSALTWGMLIHSCVIKQG-LDA--SIVVASALLDMYS 313
             DV    +T  ++L   S + G      G   H+  +K+G LD        +ALL MY+
Sbjct: 166 --DV--SSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYA 221

Query: 314 KCGQVEIADSMFRSLCRK------NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           + G V+ A S+FR+          ++VTWN MI+   + G   + +E+   + ++  ++P
Sbjct: 222 RLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSL-GVRP 280

Query: 368 DSVTFLNVLAACSHTDI 384
           D VTF + L ACS  ++
Sbjct: 281 DGVTFASALPACSRLEM 297


>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01030, mitochondrial; Flags: Precursor
 gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 159/538 (29%), Positives = 266/538 (49%), Gaps = 45/538 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP----------------- 65
           +Q+H Y+L+ G  SNV +  +L+  Y +   L  + K+F  +                  
Sbjct: 109 RQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKL 168

Query: 66  ------------------QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
                             +P +V+WNSL+SGY   G  + A+ +   ++ + +     S 
Sbjct: 169 GYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSI 228

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
           +S L A  + G L+LG AIH  I++  L   V +   LIDMY K G +  A  VF  M  
Sbjct: 229 SSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDA 288

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMI 223
           K+I++WNS+++  +    L+ A   + R+      PD I++N + +G A  G  E A+ +
Sbjct: 289 KNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDV 348

Query: 224 LSSMP----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
           +  M     +PN  SW +I +G         AL +F +MQ + V  +  T ST+L  +  
Sbjct: 349 IGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGC 408

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
           LS L  G  +H   +++ L     VA+AL+DMY K G ++ A  +F  +  K+L +WN M
Sbjct: 409 LSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCM 468

Query: 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKD 399
           + GYA  G   + I  F  +     ++PD++TF +VL+ C ++ +   +  +YF+ M   
Sbjct: 469 LMGYAMFGRGEEGIAAFSVMLEA-GMEPDAITFTSVLSVCKNSGL-VQEGWKYFDLMRSR 526

Query: 400 YGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARI 459
           YGI PT+EHC  M+ L+G+ G +  A   I+ +       +W A LS+     DL++A I
Sbjct: 527 YGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEI 586

Query: 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           +   +  LE  +   Y+M+ NLY++   W+    +RN MR   +R +   SWI+++  
Sbjct: 587 AWKRLQVLEPHNSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQT 644



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 129/500 (25%), Positives = 227/500 (45%), Gaps = 56/500 (11%)

Query: 25  LHCYILKSGF-LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           +H  ++K G   S+  V +A MGFY +  SL  A+K+F E+P+   ++WN ++   ++SG
Sbjct: 9   IHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRSG 68

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
            + KA+ LF E++ S   A   +    L  C        G  IH  +++  LE  V + N
Sbjct: 69  NWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCN 128

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NP 199
            LI MY + G +E +  VF  M D+++ SWNS++++  + G ++ A G L  +      P
Sbjct: 129 SLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKP 188

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMP----SPNSSSWNSILTGYVNRNRVPEALHLF 255
           D +++N +++G A  G  +DAI +L  M      P++SS                     
Sbjct: 189 DIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSS--------------------- 227

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
                          S++L  +A    L  G  IH  +++  L   + V + L+DMY K 
Sbjct: 228 --------------ISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKT 273

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G +  A  +F  +  KN+V WN++++G +    L     L  +++    ++PD++T+ N 
Sbjct: 274 GYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEK-EGIKPDAITW-NS 331

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM---IREL 432
           LA+   T    +K  +    M K+ G+ P V    ++     + G    A ++   ++E 
Sbjct: 332 LASGYATLGKPEKALDVIGKM-KEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEE 390

Query: 433 GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD-YVYVMLCNLYTSHGNWDVA 491
           G G        LL   G  S L   +      ++     D YV   L ++Y   G  D+ 
Sbjct: 391 GVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSG--DLQ 448

Query: 492 SVMRNFMRERGLRKEAGCSW 511
           S +  F    G++ ++  SW
Sbjct: 449 SAIEIFW---GIKNKSLASW 465



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 174/381 (45%), Gaps = 21/381 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL+A ++ G     + +H YIL++    +V+V T L+  Y K   L  A  +
Sbjct: 223 PSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMV 282

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   ++V+WNSL+SG   +   + A  L + +E+  I  DA ++ S  +    LG  
Sbjct: 283 FDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKP 342

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +  + +  K+ +  +   VV    +     K G+  +A+ VF +M ++ +    + ++  
Sbjct: 343 EKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTL 402

Query: 181 ARN-GNLEL------AFGF-LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
            +  G L L        GF L +    D      +++   + GD++ AI I   + + + 
Sbjct: 403 LKILGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSL 462

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS--GIAGLSALTWGM--L 288
           +SWN +L GY    R  E +  F  M    +  D  TF+++LS    +GL    W    L
Sbjct: 463 ASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDL 522

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT-WNAMITGYARNG 347
           + S   + G+  +I   S ++D+  + G ++ A    +++  K   T W A ++    + 
Sbjct: 523 MRS---RYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHR 579

Query: 348 DLTKVIELFE-QLKTVRDLQP 367
           DL    EL E   K ++ L+P
Sbjct: 580 DL----ELAEIAWKRLQVLEP 596



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 78/148 (52%), Gaps = 4/148 (2%)

Query: 286 GMLIHSCVIKQGLDAS-IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
           G+ IH  +IK+GLD S   V SA +  Y +C  +  A+ +F  + +++ + WN ++    
Sbjct: 6   GLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNL 65

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
           R+G+  K +ELF +++       DS T + +L  CS+ +  F +  +    + +  G++ 
Sbjct: 66  RSGNWEKAVELFREMQFSGAKAYDS-TMVKLLQVCSNKE-GFAEGRQIHGYVLR-LGLES 122

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL 432
            V  C S+I +  + G++  ++++   +
Sbjct: 123 NVSMCNSLIVMYSRNGKLELSRKVFNSM 150


>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 143/461 (31%), Positives = 233/461 (50%), Gaps = 45/461 (9%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A ++F +IP P++  WNS+  GY QS  YR+   +F E+                     
Sbjct: 4   ARQLFDQIPDPNIALWNSMFRGYAQSESYRE---IFCEM--------------------- 39

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
                              ER VV    +I+ Y     +  A  +F    ++D++ WN +
Sbjct: 40  ------------------FERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIM 81

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
           ++     G++  A    H +PN D + +N V+ G A  G++E    +   MP  N  SWN
Sbjct: 82  VSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWN 141

Query: 237 SILTGYVNRNRVPEALHLFGEMQSK-DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
           +++ GY +     E L  F  M S+ DVP ++ T  T+LS  A L AL  G  +H     
Sbjct: 142 ALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAES 201

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
            GL  ++ V +AL+DMY+KCG +E A S+FR +  K+L++WN +I G A +      + L
Sbjct: 202 SGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNL 261

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415
           F Q+K     +PD +TF+ +L AC+H  +  D  + YF+SM  DY I P +EH   M+ +
Sbjct: 262 FFQMKNAGQ-KPDGITFIGILCACTHMGLVEDGFA-YFQSMADDYLIMPQIEHYGCMVDM 319

Query: 416 MGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475
           + + G + +A   +R++   + GV+W  LL A     ++++A ++   +I+LE  +   Y
Sbjct: 320 LARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANY 379

Query: 476 VMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           VML N+Y   G W+  + ++  MR+ G +K  GCS IEV +
Sbjct: 380 VMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVND 420



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 132/287 (45%), Gaps = 29/287 (10%)

Query: 38  VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE-LE 96
           +F +T L G+    N  A    +F E+P+ ++ SWN+LI GY  +G + + L  F   L 
Sbjct: 107 MFWNTVLKGYATNGNVEA-LEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLS 165

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
            S++  +  +  + L+AC +LG+L LG  +H       L+  V + N L+DMY KCG +E
Sbjct: 166 ESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIE 225

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIA 212
           +AI VF  M  KD+ISWN++I   A +     A     ++ N    PD I++  ++    
Sbjct: 226 NAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACT 285

Query: 213 QFGDIEDAIMILSSMPS-----PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
             G +ED      SM       P    +  ++       R+ +A+    +M     P++ 
Sbjct: 286 HMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKM-----PVEA 340

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
                          + W  L+ +C I + ++ + +    L+++  K
Sbjct: 341 -------------DGVIWAGLLGACRIYKNVELAELALQRLIELEPK 374



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 2/198 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+  L  +L A + LG     + +H Y   SG   NV+V  ALM  Y K   + +A  +
Sbjct: 171 PNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISV 230

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    ++SWN+LI G     +   ALNLF +++ +    D  +F   L AC  +G +
Sbjct: 231 FRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLV 290

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G A   S    Y +   +    C++DM  + G +E A+    +M ++ D + W  ++ 
Sbjct: 291 EDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLG 350

Query: 179 ASARNGNLELAFGFLHRL 196
           A     N+ELA   L RL
Sbjct: 351 ACRIYKNVELAELALQRL 368



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 157/349 (44%), Gaps = 26/349 (7%)

Query: 34  FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFV 93
           F  NV   T+++  Y     L  A ++F   P+  VV WN ++SGY++ G   +A  LF 
Sbjct: 40  FERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFH 99

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
           E+       D   + + L      G+++    +  ++     ER +   N LI  Y   G
Sbjct: 100 EMPNR----DVMFWNTVLKGYATNGNVEALEGLFEEMP----ERNIFSWNALIGGYAHNG 151

Query: 154 SVEDAIGVFGEMIDKDIISWN-----SVIAASARNGNLELAFGFLHRLPNPDTIS----- 203
              + +G F  M+ +  +  N     +V++A AR G L+L   ++H       +      
Sbjct: 152 LFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLG-KWVHVYAESSGLKGNVYV 210

Query: 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
            N +++  A+ G IE+AI +   M + +  SWN+++ G    +R  +AL+LF +M++   
Sbjct: 211 GNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQ 270

Query: 264 PMDEYTFSTMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
             D  TF  +L     +  +  G     S      +   I     ++DM ++ G++E A 
Sbjct: 271 KPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAM 330

Query: 323 SMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFE-QLKTVRDLQPDS 369
           +  R +    + V W  ++ G  R   + K +EL E  L+ + +L+P +
Sbjct: 331 AFVRKMPVEADGVIWAGLL-GACR---IYKNVELAELALQRLIELEPKN 375


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 163/556 (29%), Positives = 270/556 (48%), Gaps = 45/556 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN      + +A S L    Y Q +H +++KS F +++FV T+++  Y K + L  A+ +
Sbjct: 52  PNNLTFPSVAKACSKLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNL 111

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+  V SWNS+I G+ Q G   + ++LF E+    I AD+ +      +   L  L
Sbjct: 112 FSRMPKRDVASWNSMILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDL 171

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI---ISWNSVI 177
           ++  +IHS  +K  ++  V ++N  I  Y KCG    A  VF + IDK +   +SWNS+I
Sbjct: 172 KMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVF-DGIDKGLKTGVSWNSMI 230

Query: 178 AASARNGNLELAFGFLHRL-------------------PNPDTISY-------------- 204
           A  A       A GF  ++                     P+ + +              
Sbjct: 231 AGYAHFEQCSKAVGFFKKMLCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCD 290

Query: 205 ------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
                 N +I+  ++ GDI  A  +  +M      SW +++ GY  +  + EA+ LF  M
Sbjct: 291 SDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAM 350

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           ++     D  T  +++SG     AL  G  I +     GL  +++V +AL+D+Y+KCG +
Sbjct: 351 EAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSM 410

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           + A  +F ++  K+LV+W  +I G A NG+  + + LF Q+  +  L+P+ +TFL VL A
Sbjct: 411 DNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVEL-GLKPNHITFLAVLQA 469

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           C+H     +K  E F  MTK Y I P ++H   M  L+G+KG +  A   I+ + F    
Sbjct: 470 CNHAGF-LEKGWECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDV 528

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
            +W  LLSA     ++ +    A  + +LE  +   YV + N+Y S G WD  + +R  M
Sbjct: 529 GIWSVLLSACKIHQNVVIGECVAYHLFELEPQTAVPYVQMANIYASAGKWDRVAAIRTMM 588

Query: 499 RERGLRKEAGCSWIEV 514
           +     K  G S ++V
Sbjct: 589 KCNKAMKSPGKSLVQV 604



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 190/421 (45%), Gaps = 45/421 (10%)

Query: 68  SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
           +V  WNS I+  V  G   KAL LF +++++ +  +  +F S   AC +L +L+    +H
Sbjct: 18  TVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVH 77

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
           + +VK   +  + +   ++DMY KC  +  A  +F  M  +D+ SWNS+I   A+ G ++
Sbjct: 78  THVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVD 137

Query: 188 -------------------LAFGFLHRL--------------------PNPDTISYNEVI 208
                                 G  H                       + D    N  I
Sbjct: 138 RVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWI 197

Query: 209 NGIAQFGDIEDAIMILSSMPS--PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
              A+ G+   A  +   +        SWNS++ GY +  +  +A+  F +M       D
Sbjct: 198 AAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRAD 257

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
             T  ++LS       L  G LIH+  I+ G D+ I V + L+ MYSKCG +  A  +F 
Sbjct: 258 LSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFD 317

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
           ++  K  V+W AMI GYA  GDL + + LF  ++ V + +PD VT +++++ C  T    
Sbjct: 318 NMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGE-KPDLVTIISLMSGCGQTGAL- 375

Query: 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
            ++ ++ ++     G+K  +  C ++I +  + G +  A+ +   +   S  V W  L++
Sbjct: 376 -ELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSL-VSWTTLIA 433

Query: 447 A 447
            
Sbjct: 434 G 434


>gi|359475162|ref|XP_003631603.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g18840-like [Vitis vinifera]
          Length = 670

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 159/550 (28%), Positives = 273/550 (49%), Gaps = 70/550 (12%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +E+ L  +L  S+ L  ++Y +QLH Y++K+    + F  ++L+  Y K     +  ++F
Sbjct: 122 DEFSLTRMLNLSAKLSMESYGKQLHSYMVKTANNISGFAVSSLIDMYSKCGCFREVCQVF 181

Query: 62  ---------------------------------VEIPQPSVVSWNSLISGYVQSGKYRKA 88
                                             ++    VVSWN+LISGYVQ+G    A
Sbjct: 182 DGCAGVLDLVSKNAMVAACCREGELEMGVNLFWRDLELNDVVSWNTLISGYVQNGCEEDA 241

Query: 89  LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
           L LFV +E +E+  + ++    L+AC  L SL+LG  +H  ++KY L     I++ L+D+
Sbjct: 242 LKLFVHMEENEVRWNEHTIAGLLSACAGLRSLKLGKEVHGWVLKYELGFNPFISSGLVDV 301

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVI 208
           Y KCG+++ A  V+  +   +  S  S+I   +  GN+                      
Sbjct: 302 YCKCGNMKYAELVYATIGTGNAFSITSMIVGHSSQGNM---------------------- 339

Query: 209 NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD--VPMD 266
                     +A  +  S+   +S  W ++ TGYV   +      L  E + K+  VP D
Sbjct: 340 ---------GEARRLFDSLTEKSSIIWTALFTGYVKSQQCEAVFELLSEFRVKEAMVP-D 389

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326
                ++L   A  +AL  G  IH+ V++ G++    + SA++DMYSK G ++ A+ +F+
Sbjct: 390 ALILISVLGACAIQAALNPGKQIHAYVLRIGIELDEKLVSAMVDMYSKSGNIKYAEKIFQ 449

Query: 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386
            +  ++ V +N M  GYA +G   + I+ FE++   R ++PD+VTF+ +L+AC H  +  
Sbjct: 450 RVTNRDAVIYNIMTAGYAHHGHENQAIQQFEEMLE-RGVRPDAVTFVALLSACRHCGL-V 507

Query: 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLS 446
           +   +YF SMT DY I P ++H   MI L G+  ++ +A   ++ +      V+  A L+
Sbjct: 508 ELGEKYFASMT-DYNILPEIDHYACMIDLYGRANQLEKAVAFMKRIPIEPDAVILGAFLN 566

Query: 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506
           A     +  +AR +  +++++EGD+   YV L N+Y + G W     +R  MRE  ++K 
Sbjct: 567 ACRINRNTKLAREAEEKILRIEGDNGARYVQLANVYAAEGKWVEMGRIRRKMRENEIKKF 626

Query: 507 AGCSWIEVEN 516
           AGCSW+ VEN
Sbjct: 627 AGCSWVYVEN 636



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 125/478 (26%), Positives = 206/478 (43%), Gaps = 104/478 (21%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSW----------- 72
           + H + +K+G  S VF S  L+  Y K   LA+AHK+F E+P+ +V +W           
Sbjct: 9   RFHAHAIKNGITSTVFTSNQLIHLYSKHGFLAEAHKLFDEMPERNVFTWNAIIWAYIKTQ 68

Query: 73  --------------------NSLISGYVQSGKYR-KALNLFVELE--RSEIYADAYSFTS 109
                               NS++SGY+ +  Y   AL LF+E++    E   D +S T 
Sbjct: 69  NLKQARELFDSAPSKDLVTYNSMLSGYINTDGYETNALKLFIEMQSLNDETRIDEFSLTR 128

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF-GEMIDK 168
            L    +L     G  +HS +VK +        + LIDMY KCG   +   VF G     
Sbjct: 129 MLNLSAKLSMESYGKQLHSYMVKTANNISGFAVSSLIDMYSKCGCFREVCQVFDGCAGVL 188

Query: 169 DIISWNSVIAASARNGNLELAFGFLHR-LPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           D++S N+++AA  R G LE+      R L   D +S+N +I+G  Q G  ED        
Sbjct: 189 DLVSKNAMVAACCREGELEMGVNLFWRDLELNDVVSWNTLISGYVQNGCEED-------- 240

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
                                  AL LF  M+  +V  +E+T + +LS  AGL +L  G 
Sbjct: 241 -----------------------ALKLFVHMEENEVRWNEHTIAGLLSACAGLRSLKLGK 277

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD------------------------- 322
            +H  V+K  L  +  ++S L+D+Y KCG ++ A+                         
Sbjct: 278 EVHGWVLKYELGFNPFISSGLVDVYCKCGNMKYAELVYATIGTGNAFSITSMIVGHSSQG 337

Query: 323 ------SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
                  +F SL  K+ + W A+ TGY ++     V EL  + +    + PD++  ++VL
Sbjct: 338 NMGEARRLFDSLTEKSSIIWTALFTGYVKSQQCEAVFELLSEFRVKEAMVPDALILISVL 397

Query: 377 AACSHTDI--PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
            AC+      P  ++  Y   +    GI+   +   +M+ +  + G +  A+++ + +
Sbjct: 398 GACAIQAALNPGKQIHAYVLRI----GIELDEKLVSAMVDMYSKSGNIKYAEKIFQRV 451



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 161/364 (44%), Gaps = 66/364 (18%)

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           S++ G   H+  +K  +   V  +N LI +Y K G + +A  +F EM ++++ +WN++I 
Sbjct: 3   SIKDGFRFHAHAIKNGITSTVFTSNQLIHLYSKHGFLAEAHKLFDEMPERNVFTWNAIIW 62

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
           A  +  NL+ A       P+ D ++Y                               NS+
Sbjct: 63  AYIKTQNLKQARELFDSAPSKDLVTY-------------------------------NSM 91

Query: 239 LTGYVNRNRVP-EALHLFGEMQS--KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
           L+GY+N +     AL LF EMQS   +  +DE++ + ML+  A LS  ++G  +HS ++K
Sbjct: 92  LSGYINTDGYETNALKLFIEMQSLNDETRIDEFSLTRMLNLSAKLSMESYGKQLHSYMVK 151

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK--------NLVTWNAMITGYARNG 347
              + S    S+L+DMYSKCG        FR +C+         +LV+ NAM+    R G
Sbjct: 152 TANNISGFAVSSLIDMYSKCG-------CFREVCQVFDGCAGVLDLVSKNAMVAACCREG 204

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAA------CSHTDIPFDKVSEYFESMTKDYG 401
           +L   + LF      RDL+ + V   N L +      C    +      E  E    ++ 
Sbjct: 205 ELEMGVNLF-----WRDLELNDVVSWNTLISGYVQNGCEEDALKLFVHMEENEVRWNEHT 259

Query: 402 IKPTVEHCCSMIRL-MGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARIS 460
           I   +  C  +  L +G++   W  +    ELGF  +  +   L+     C ++  A + 
Sbjct: 260 IAGLLSACAGLRSLKLGKEVHGWVLK---YELGFNPF--ISSGLVDVYCKCGNMKYAELV 314

Query: 461 AAEV 464
            A +
Sbjct: 315 YATI 318



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 92/190 (48%), Gaps = 1/190 (0%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+  +L  +L A +        +Q+H Y+L+ G   +  + +A++  Y K  ++  A K+
Sbjct: 388 PDALILISVLGACAIQAALNPGKQIHAYVLRIGIELDEKLVSAMVDMYSKSGNIKYAEKI 447

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     V +N + +GY   G   +A+  F E+    +  DA +F + L+AC   G +
Sbjct: 448 FQRVTNRDAVIYNIMTAGYAHHGHENQAIQQFEEMLERGVRPDAVTFVALLSACRHCGLV 507

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
           +LG    + +  Y++   +    C+ID+YG+   +E A+     + I+ D +   + + A
Sbjct: 508 ELGEKYFASMTDYNILPEIDHYACMIDLYGRANQLEKAVAFMKRIPIEPDAVILGAFLNA 567

Query: 180 SARNGNLELA 189
              N N +LA
Sbjct: 568 CRINRNTKLA 577


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 150/525 (28%), Positives = 261/525 (49%), Gaps = 35/525 (6%)

Query: 24  QLHCYILKSGFLSNVFVSTALM-GFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q+H  ++ +  +S+ F ++ L+     K  ++  A  +F +I QP+    N+++  Y +S
Sbjct: 29  QIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTES 88

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
               +AL  + E+ +  +  D Y++   L ACG +  L  G  +  + VK      V + 
Sbjct: 89  STPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVV 148

Query: 143 NCLIDMYGKCGS-------------------------------VEDAIGVFGEMIDKDII 171
           N LI MY +CG                                +E+A  +F EM ++D++
Sbjct: 149 NGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVV 208

Query: 172 SWNSVIAASARN-GNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSP 230
           SW+ +I    +  G +  A  F   +P  D +S+N +I+G A+ G++E A  I   M   
Sbjct: 209 SWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQK 268

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
           N  SW+ ++ GY       EAL+LF +M  + +  D  +    +S  + L AL  G  IH
Sbjct: 269 NVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIH 328

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350
             + +  +   IVV +AL+DMY KCG  + A  +F S+  +N+V+WN MI G   NG   
Sbjct: 329 LYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFGK 388

Query: 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
           + +E F Q++  R +  D + FL VL ACSH ++  + +   F  M   Y ++P +EH  
Sbjct: 389 EALECFXQMEMER-IPMDDLLFLGVLMACSHANLVTEGL-HIFNQMKGVYRLEPKLEHYG 446

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470
            ++ L+G+ G++ + Q +I+ +       +W +LL A     ++ +A I    + +L+ D
Sbjct: 447 CLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKAD 506

Query: 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
              VYV++ N+Y   G W+    +R  M+ER ++K+ G S IEV+
Sbjct: 507 DSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVD 551



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 2/198 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +   + A S LG     + +H Y+ ++  L ++ V TAL+  Y K  S  +A  +
Sbjct: 303 PDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXI 362

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+ +VVSWN +I G   +G  ++AL  F ++E   I  D   F   L AC     +
Sbjct: 363 FNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGVLMACSHANLV 422

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G+ I +++   Y LE  +    CL+D+ G+ G ++    +   M +  +   W S++ 
Sbjct: 423 TEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLL 482

Query: 179 ASARNGNLELAFGFLHRL 196
           A   + N+ LA   + RL
Sbjct: 483 ACRIHQNVTLAEIVVERL 500


>gi|115452309|ref|NP_001049755.1| Os03g0283500 [Oryza sativa Japonica Group]
 gi|24796822|gb|AAN64498.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108707537|gb|ABF95332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548226|dbj|BAF11669.1| Os03g0283500 [Oryza sativa Japonica Group]
 gi|215737043|dbj|BAG95972.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 598

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 154/523 (29%), Positives = 252/523 (48%), Gaps = 48/523 (9%)

Query: 1   PNEYVLFHLLR---ASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADA 57
           P+E  L  LLR   AS          +LH      GF S++FVS AL+  Y     +  A
Sbjct: 111 PDEITLSTLLRSLAASGPALSPLVTGELHAVAFLRGFGSDLFVSNALITAYANAGDMRSA 170

Query: 58  HKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE------IYADAYSFTSAL 111
             +F E+P+  VVSWNSLIS   ++G YR+ L+LF E  R        +  +  + TS L
Sbjct: 171 RAVFDEMPRRDVVSWNSLISACARAGWYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVL 230

Query: 112 AACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII 171
            AC QL  +  G+ +H    +++ E G                           +D D+ 
Sbjct: 231 HACAQLKVVDFGIGVH----RFAAESG---------------------------LDMDMA 259

Query: 172 SWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
            WNS+I   A+ G L+ A   L  +   D+ISY+ +I G    G +E+ + +     +  
Sbjct: 260 VWNSIIGFYAKCGRLQYARQLLDGMTRKDSISYSAMITGYMNNGHVEEGMQLFRQASARG 319

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
            S WNS++ G V   R  + L L  EM +  V  +  T S ++  +   S L      H 
Sbjct: 320 ISMWNSVIAGLVQNGRQSDVLRLLQEMIASKVLPNSATLSIVMPSVPSFSTLLGAKQAHG 379

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
             I+   D SI + SAL+D Y+K G ++ A  +F+    ++ + W ++I+  A +G+  +
Sbjct: 380 YAIRNDYDQSIRLVSALIDAYAKAGFLDTARKVFKLTEHRSTIVWTSIISAVAAHGEAVE 439

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE---YFESMTKDYGIKPTVEH 408
            + LF Q+ T    +PD+VTF  VL+AC+H+     KV+E    F SM   +GI P +E 
Sbjct: 440 ALSLFNQMITA-GAKPDTVTFTTVLSACAHS----GKVAEARKVFNSMQAVFGISPVIEQ 494

Query: 409 CCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE 468
              M+  + + G +  A +++ ++ F     VW ALL+ +    D++  R +   +  +E
Sbjct: 495 YACMVSALSRAGMLKEAVKLVNKMPFEPNAKVWGALLNGAAVVGDVEFGRYAFDRLFVIE 554

Query: 469 GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSW 511
             +   Y+++ NLY++ G W+ A  +R+ +   GL K  GC+W
Sbjct: 555 PKNTGNYIVMANLYSNAGKWEEAETIRSMLWGVGLEKVPGCTW 597


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 150/502 (29%), Positives = 247/502 (49%), Gaps = 38/502 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
            Q+H ++L  G      V + ++ FY     +  +  +F  I +PS + +NS+I  Y + 
Sbjct: 90  HQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARY 149

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G   + +  +  +       D ++F   L +  +L S+ +G  +H  I++  L+  + +A
Sbjct: 150 GFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVA 209

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI 202
             LI +YGKCG + DA  VF  M  +D+ SWN+++A                        
Sbjct: 210 TSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLA------------------------ 245

Query: 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                  G  + G I+ A+ I   MP  N  SW ++++GY       +AL LF EM  +D
Sbjct: 246 -------GYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKED 298

Query: 263 --VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             V  +  T  ++L   A LS L  G  IH    + GL+++  V  AL  MY+KCG +  
Sbjct: 299 SGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVD 358

Query: 321 ADSMFRSLCR--KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           A + F  L R  KNL+ WN MIT YA  G   + +  F ++     +QPD +TF  +L+ 
Sbjct: 359 ARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQA-GIQPDDITFTGLLSG 417

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH+ +  D   +YF  M+  Y I P VEH   +  L+G+ G +  A +++ E+   +  
Sbjct: 418 CSHSGL-VDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGP 476

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
            +W +LL+A     +L++A  +A ++  LE ++   YV+L N+Y   G W     +R  +
Sbjct: 477 SIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIV 536

Query: 499 RERGLRKEAGCSWIEVENVAAH 520
           + +G +K  GCSWIE+ N  AH
Sbjct: 537 KSQGTKKSPGCSWIEI-NGKAH 557



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 4/193 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  +L A + L      +Q+H    + G  SN  V  AL   Y K  SL DA   
Sbjct: 303 PNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNC 362

Query: 61  FVEI--PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           F ++   + ++++WN++I+ Y   G   +A++ F E+ ++ I  D  +FT  L+ C   G
Sbjct: 363 FDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSG 422

Query: 119 SLQLGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSV 176
            + +G+   + +   YS+   V    C+ D+ G+ G + +A  + GEM +      W S+
Sbjct: 423 LVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSL 482

Query: 177 IAASARNGNLELA 189
           +AA  ++ NLE+A
Sbjct: 483 LAACRKHRNLEMA 495



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 46/234 (19%), Positives = 101/234 (43%), Gaps = 8/234 (3%)

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
           + ++P P+S  +   ++       +   L    +  S   P    +++ +   + GL+ L
Sbjct: 31  IDTVPPPSSPPFKCSISPLT----ISATLQNLLQPLSAPGPPPILSYAPVFQFLTGLNML 86

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H+ ++ +GL  + +V S ++  Y+  G ++ + S+F  +   + + +N+MI  Y
Sbjct: 87  KLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAY 146

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           AR G   + +  +  + +      D  TF  VL   S  ++    + +    +    G++
Sbjct: 147 ARYGFAERTVATYFSMHS-WGFTGDYFTFPFVLK--SSVELLSVWMGKCVHGLILRIGLQ 203

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
             +    S+I L G+ GE+  A ++   +        W ALL+       +D A
Sbjct: 204 FDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVS-SWNALLAGYTKSGCIDAA 256


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 156/518 (30%), Positives = 268/518 (51%), Gaps = 38/518 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNV-FVSTALMGFYRKINSLADAHK 59
           P+     +LL+ +    +    +Q+HC+ L  G LS   ++  +L+  Y        A +
Sbjct: 128 PDRQTFLYLLQTTK---FVAEVKQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQ 184

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F E+   +VVS+N++I G+ + G     L LF ++    +  D ++    L  CGQLG 
Sbjct: 185 LFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGE 244

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            +LG ++H++I K      +++ N L+DMY KC  ++ A  VF   ++KD +SW      
Sbjct: 245 TKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSW------ 298

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
                                    N +I G A+ G++E A  + + +P+ +  SWNS++
Sbjct: 299 -------------------------NTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLI 333

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           +GY           LF  M +++V  D+ T   ++S +A + AL  G  IH   +K    
Sbjct: 334 SGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTK 393

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
                 SAL+DMY KCG +E A  +F  +  K++ TW  MITG+A +G   K +ELF  +
Sbjct: 394 IEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVM 453

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           +   + +P+ VTF++VLAACSH+ +  D+  + F SM K Y I+P VEH   ++ L+ + 
Sbjct: 454 QA--ETKPNDVTFVSVLAACSHSGL-VDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRS 510

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G +  A  +I ++       +W A+LSA     ++++A  +  E++KLE + +  Y++L 
Sbjct: 511 GRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLS 570

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           N+Y + G W  +  +R  M  RG++K AGCS + V+ +
Sbjct: 571 NVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVDGM 608


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 152/542 (28%), Positives = 264/542 (48%), Gaps = 46/542 (8%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + LH  ILKS    +  + T+L+  Y  + S++ A+ +F      +V  WN +I  +  +
Sbjct: 21  KSLHASILKSHL--HPHLCTSLIAQYASLGSISHAYALFSTSHSSNVFLWNHIIRAFSNT 78

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
              R +L L+  + +  I A  ++F   L ACG L   +LG   H+ +V +  E  V +A
Sbjct: 79  PHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHAHVVVFGYESDVFVA 138

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL-------------- 188
           N L+ MYG+ G  + +  VF  M +++++SW+S++ A A NG  E               
Sbjct: 139 NSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIA 198

Query: 189 --------AFGFLHRLPNPDTISYNEVINGI--------------AQFGDIEDAIMILSS 226
                   A   +HR    D      + NG+              A+ G I+ A      
Sbjct: 199 PNRGSIVNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYG 258

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           +   +  +W S++  YV  +    AL LF +M+   +  D  T  +++  ++ L++    
Sbjct: 259 ILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLA 318

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
             +H  + +      I + +A++D+Y KCG +E A   F  +  +NL++W+ MI+GY  +
Sbjct: 319 RFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMH 378

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           G   + + LF+Q+K    ++PD + F+ VL+ACSH  +   +  E F++M +D+G+ P  
Sbjct: 379 GHGREALCLFDQMKA--SIKPDHIAFVMVLSACSHGGL-IAEGWECFKAMNRDFGVTPRT 435

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
           EH   M+ L+G+ G +  AQ  I  +       VW ALL A    S+L+ A  +A  +  
Sbjct: 436 EHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHSNLETAETAARHLFN 495

Query: 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN-----VAAHS 521
           L+ ++   Y++L N+Y S G    A  +R  M+ RG+RK  G + IE++N     VA  +
Sbjct: 496 LDAENPGRYILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTIIEIKNKVYTFVAGDT 555

Query: 522 SN 523
           SN
Sbjct: 556 SN 557



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/452 (21%), Positives = 182/452 (40%), Gaps = 59/452 (13%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           LL+A   L       + H +++  G+ S+VFV+ +LM  Y +      + ++F  +P+ +
Sbjct: 106 LLKACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERN 165

Query: 69  VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
           VVSW+S++  Y  +G+Y + L LF  +    I  +  S  +A+A   +         +  
Sbjct: 166 VVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAMACIHREHEADDFCRV-- 223

Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN----G 184
            ++   L+    + N  + MY +CG ++ A   F  ++DKD+++W S+I A  +      
Sbjct: 224 -VIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPIN 282

Query: 185 NLEL---------------AFGFLHRLPNPDTISYNEVINGI------------------ 211
            LEL                   +H + N  +      ++G+                  
Sbjct: 283 ALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVID 342

Query: 212 --AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
              + G++E A      M + N  SW+++++GY       EAL LF +M++   P D   
Sbjct: 343 LYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQMKASIKP-DHIA 401

Query: 270 FSTMLSGIA--GLSALTWGMLIHSCVIKQGLDASIVVAS----ALLDMYSKCGQVEIADS 323
           F  +LS  +  GL A  W      C      D  +   +     ++D+  + G++  A +
Sbjct: 402 FVMVLSACSHGGLIAEGW-----ECFKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQA 456

Query: 324 MF-RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
              R     +   W A++     + +L         L  +    P     L+ + A S  
Sbjct: 457 FIERMPITPDAGVWGALLGACRIHSNLETAETAARHLFNLDAENPGRYILLSNIYASSGK 516

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
               D +     ++ K  G++ TV H    I+
Sbjct: 517 RKEADDI----RALMKSRGVRKTVGHTIIEIK 544



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 3/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  L+ A S+L      + +H  I +S F +++ + TA++  Y K  +L  A K 
Sbjct: 297 PDSVTLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKC 356

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   +++SW+++ISGY   G  R+AL LF +++ S I  D  +F   L+AC   G +
Sbjct: 357 FDRMSARNLISWSTMISGYGMHGHGREALCLFDQMKAS-IKPDHIAFVMVLSACSHGGLI 415

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G      + + + +        C++D+ G+ G + +A      M I  D   W +++ 
Sbjct: 416 AEGWECFKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLG 475

Query: 179 ASARNGNLELA 189
           A   + NLE A
Sbjct: 476 ACRIHSNLETA 486


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 143/499 (28%), Positives = 264/499 (52%), Gaps = 6/499 (1%)

Query: 23  QQLHCYILKSGFLSN--VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H  I K+G  ++  VF    L       ++L  A ++F   P P     N+LI    
Sbjct: 19  KQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPDTFMHNTLIRSLS 78

Query: 81  QSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
            S     +L+ F++L R   +  D+++F  AL A      L+ G+ +HS+  ++  +  +
Sbjct: 79  LSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHI 138

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            +   LI MY +CG    A  VF EM + ++++WN+V+ A+ R G++E A      +P  
Sbjct: 139 FVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVR 198

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           +  S+N ++ G A+ G++  A  +   MP  +  SW++++ G+ +     EA   F E+ 
Sbjct: 199 NLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELL 258

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
            +++  +E + + +LS  A   A  +G ++H  V K G      V +AL+D YSKCG V 
Sbjct: 259 REEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVA 318

Query: 320 IADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           +A  +F+++   +++V+W ++I G A +G   + I+LF +++    ++PD +TF+++L A
Sbjct: 319 MARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEE-SGVRPDGITFISLLYA 377

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CSH+ +  ++    F  M   YGI+P +EH   M+ L G+   + +A   I E+      
Sbjct: 378 CSHSGL-VEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNA 436

Query: 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498
           ++WR LL A     ++++A +  A + +++ D+   +V+L N+Y   G W   S +R  M
Sbjct: 437 IIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTM 496

Query: 499 RERGLRKEAGCSWIEVENV 517
            E  ++K  G S IE++ V
Sbjct: 497 TEHSMKKTPGWSMIEIDKV 515



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 131/269 (48%), Gaps = 17/269 (6%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE  L  +L A +  G   + + LH ++ K+GFL    V+ AL+  Y K  ++A A  +F
Sbjct: 265 NEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVF 324

Query: 62  VEIP-QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
             +P   S+VSW S+I+G    G   +A+ LF E+E S +  D  +F S L AC   G +
Sbjct: 325 QNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLV 384

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G  + SK+   Y +E  +    C++D+YG+   ++ A     EM +  + I W +++ 
Sbjct: 385 EEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLG 444

Query: 179 ASARNGNLELAFGFLHRLP--NPDTISYNEVINGI----AQFGDIEDAIMILSSMPSPNS 232
           A + +GN+E+A     RL   +PD    + +++ +     ++ D+      ++      +
Sbjct: 445 ACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKT 504

Query: 233 SSW-----NSILTGYV---NRNRVPEALH 253
             W     + ++ G+V     N V E  H
Sbjct: 505 PGWSMIEIDKVIYGFVAGEKPNEVTEEAH 533


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 147/514 (28%), Positives = 252/514 (49%), Gaps = 63/514 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P ++     +RA + LG     +Q+HC  LK G  S +FV + L   Y K  ++ DA K+
Sbjct: 39  PTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKV 98

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P    VSW ++I GY + G++ +AL  F ++   E+  D +   S L ACG L + 
Sbjct: 99  FEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKAC 158

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G ++HS +VK   E  + + N L DMY K G +E A  VFG             I + 
Sbjct: 159 KFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFG-------------IDSE 205

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
            RN                  +SY  +I+G  +   IE                      
Sbjct: 206 CRN-----------------VVSYTCLIDGYVETEQIE---------------------- 226

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
                    + L +F E++ + +  +E+TFS+++   A  +AL  G  +H+ V+K   D 
Sbjct: 227 ---------KGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDE 277

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
              V+S L+DMY KCG +E A   F  +     + WN++++ + ++G     I++FE++ 
Sbjct: 278 DPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERM- 336

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
             R ++P+++TF+++L  CSH  +  ++  +YF SM K YG+ P  EH   +I L+G+ G
Sbjct: 337 VDRGVKPNAITFISLLTGCSHAGL-VEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAG 395

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
            +  A+  I  + F      W + L A     D ++ +++A +++KLE  +    V+L N
Sbjct: 396 RLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSN 455

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           +Y +   W+    +R  MR+  ++K  G SW++V
Sbjct: 456 IYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDV 489


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 171/598 (28%), Positives = 284/598 (47%), Gaps = 86/598 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQ------QLHCYILKSGFLSNVFVSTALMGF--YRKIN 52
           P+    + +L+    L   + CQ      Q+H +I+K+G  + +F  + L+ F    +  
Sbjct: 18  PSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSG 77

Query: 53  SLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALA 112
            ++ A  +F  I +P++  WNS+I G   S     AL  FV +  S +  ++Y+F   L 
Sbjct: 78  DISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLK 137

Query: 113 ACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV------------EDAIG 160
           +C +L S   G  IH+ ++K      V I   LI+MY + G +             DAI 
Sbjct: 138 SCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAIS 197

Query: 161 -------------------VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----- 196
                              +F EM  KD++SWN++IA  A+ G  + A      +     
Sbjct: 198 FTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANV 257

Query: 197 -PNPDTIS---------------------------------YNEVINGIAQFGDIEDAIM 222
            PN  TI                                   N +I+  ++ GD++ A  
Sbjct: 258 PPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARE 317

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
           +   M   +  SWN ++ GY +     EAL LF EM +  V   E TF ++L   A L A
Sbjct: 318 LFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGA 377

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           +  G  IH+ + K     S  ++++L+D+Y+KCG +  A  +F  +  K+L +WNAMI G
Sbjct: 378 IDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICG 437

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
            A +G   K  ELF ++ +   ++P+ +TF+ +L+AC H  +  D   ++F SM +DY I
Sbjct: 438 LAMHGQADKAFELFSKMSS-DGIEPNEITFVGILSACKHAGL-VDLGQQFFSSMVQDYKI 495

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD---LDVARI 459
            P  +H   MI L+G+ G    A+ +++ +     G +W +LL   GAC D   +++  +
Sbjct: 496 SPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLL---GACRDHGRVELGEL 552

Query: 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
            A  + +LE D+   YV+L N+Y   G WD  + +R  + +RG++K  GC+ IEV+NV
Sbjct: 553 VAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNV 610


>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 633

 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 156/528 (29%), Positives = 271/528 (51%), Gaps = 51/528 (9%)

Query: 1   PNEYVLFHLLRASSD--LGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           P+ +    LL+A ++  +    +  Q+HC++L++GF S+VFV+ AL+ FY     + +A+
Sbjct: 114 PDSFTFPFLLKACANVLISAPQFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAY 173

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           K+F E      VS+N++I+G+ + G       +F E+    +  D Y+F + L+ C  L 
Sbjct: 174 KVFDESFVRDCVSFNTMINGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLE 233

Query: 119 SLQLGMAIHSKIVKY--SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
             ++G  +H  + +        V++ N L+DMY KCG +     V  E +   +    SV
Sbjct: 234 DYRIGRQVHGLVYRELGCFGGNVLLVNKLVDMYAKCGRL-----VMAETVLSVVKPGKSV 288

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
           +AA                        +  +++  A  G+++ A  +   M   +  SW 
Sbjct: 289 VAA------------------------WTSLVSAYALRGEVKVARRLFDQMGERDVVSWT 324

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH------ 290
           ++++GY +     EAL LF +++   +  DE      LS  A L AL  G  IH      
Sbjct: 325 AMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACARLGALELGRRIHRQYAGE 384

Query: 291 --SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARN 346
             +C I +G        SA++DMY+KCG ++IA  +FR     +K    +N++I+G A +
Sbjct: 385 NWTCSINRGF------TSAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSIISGLAHH 438

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           G       LFE++  +  L+PD++TF+ VL+AC H  +  D   + FESM   YG+ P +
Sbjct: 439 GRGEYAKNLFEEMGLL-GLKPDNITFVAVLSACGHCGL-VDFGKKLFESMFTVYGVSPEM 496

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
           EH   M+ L+G+ G +  A R+I ++ F +  V+WRALLSA     D+ +AR+++ E+++
Sbjct: 497 EHYGCMVDLLGRAGHLDEAHRLILKMPFKANAVIWRALLSACKVHGDVALARVASYELVE 556

Query: 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           L+ D    YVML N+ +     D A+ +R  +   G++K  G S++E+
Sbjct: 557 LQHDHGAGYVMLSNMLSDTDQHDEAASLRKAIDNVGIQKPPGWSYVEM 604


>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 147/516 (28%), Positives = 258/516 (50%), Gaps = 35/516 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDT-YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P+ + +  +L+A S L  D+   +++ C++L+ GF S++FV  AL+ +Y + +    A  
Sbjct: 136 PDNFTITCVLKALSVLFPDSILAKEVQCFVLRHGFDSDIFVVNALITYYSRCDEYGIARI 195

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLG 118
           +F  +    +VSWNS+I+GY Q G Y     L+ + L+ + +  +  +  S L AC Q  
Sbjct: 196 LFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTN 255

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
            L  GM +H  I++  +E  V   N LI +Y                             
Sbjct: 256 DLVFGMKVHQFIIERKVEMDVSAHNSLIGLY----------------------------- 286

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
             A+ G+L+ A    + + N D ++Y  +++G    G ++ A+ +   M +P  S+WN++
Sbjct: 287 --AKCGSLDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFREMKNPRLSTWNAV 344

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           ++G V  N     L L  EMQ      +  T S++L   +  S L  G  IH+  I+ G 
Sbjct: 345 ISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSSILPTFSCFSNLKGGKAIHAYAIRNGY 404

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
             +I VA++++D Y+K G +  A  +F     ++L+ W A+I+ Y+ +GD    + LF  
Sbjct: 405 AHNIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSLIVWTAIISAYSAHGDANAALRLFGD 464

Query: 359 LKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           + +    QPD VTF  VLAAC+H+ +  ++  + F+ M   YG +P VEH   M+ ++ +
Sbjct: 465 MLS-NGTQPDPVTFTAVLAACAHSGM-VNEAWKIFDEMFLKYGFQPCVEHYACMVGVLSR 522

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G +  A   I ++       VW ALL+      D+++ +     +  +E ++   YV++
Sbjct: 523 AGMLSEAAEFICKMPIEPNAKVWGALLNGVSVSGDVELGKFVCDHLFNMEPENTGNYVIM 582

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
            NLY+  G W+ A  +R  M++ GL+K  G SWIE 
Sbjct: 583 ANLYSQAGRWEEAENIREKMKKIGLKKIPGTSWIET 618



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 136/305 (44%), Gaps = 44/305 (14%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
           D  +F   +  C     L+    +H++IV  SL     +A+ LI  Y K   + +A  VF
Sbjct: 33  DYGAFGRLIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKVF 92

Query: 163 GEMIDKDIISWNS-VIAASARNGNLELAFGFLHRL--------PN--------------- 198
            +++DK+I SWN+ +I  S  N ++         L        P+               
Sbjct: 93  DKILDKNIFSWNAMLIGYSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKALSVLF 152

Query: 199 PDTISYNEVINGIAQFGDIED-------------------AIMILSSMPSPNSSSWNSIL 239
           PD+I   EV   + + G   D                   A ++   M   +  SWNS++
Sbjct: 153 PDSILAKEVQCFVLRHGFDSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMI 212

Query: 240 TGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
            GY       +   L+ +M  S  +  +  T  ++L   A  + L +GM +H  +I++ +
Sbjct: 213 AGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIERKV 272

Query: 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
           +  +   ++L+ +Y+KCG ++ A  +F  +  K+ VT+ ++++GY  +G + K ++LF +
Sbjct: 273 EMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFRE 332

Query: 359 LKTVR 363
           +K  R
Sbjct: 333 MKNPR 337



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 94/189 (49%), Gaps = 4/189 (2%)

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN---RVPEALHLF 255
           PD    +++I   ++   + +A  +   +   N  SWN++L GY   N        L   
Sbjct: 67  PDNFLASKLITFYSKSNHLYEAHKVFDKILDKNIFSWNAMLIGYSIHNMHVHTLNLLSSL 126

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALT-WGMLIHSCVIKQGLDASIVVASALLDMYSK 314
               S  +  D +T + +L  ++ L   +     +   V++ G D+ I V +AL+  YS+
Sbjct: 127 LPSYSLTLKPDNFTITCVLKALSVLFPDSILAKEVQCFVLRHGFDSDIFVVNALITYYSR 186

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           C +  IA  +F  +  +++V+WN+MI GY++ G      EL+ ++     L+P+ VT ++
Sbjct: 187 CDEYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVS 246

Query: 375 VLAACSHTD 383
           VL AC+ T+
Sbjct: 247 VLQACAQTN 255



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
           +D   F  ++   +    L     +H+ ++   L     +AS L+  YSK   +  A  +
Sbjct: 32  LDYGAFGRLIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKV 91

Query: 325 FRSLCRKNLVTWNAMITGYA-RNGDL-TKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           F  +  KN+ +WNAM+ GY+  N  + T  +           L+PD+ T   VL A S
Sbjct: 92  FDKILDKNIFSWNAMLIGYSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKALS 149


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 156/518 (30%), Positives = 268/518 (51%), Gaps = 38/518 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNV-FVSTALMGFYRKINSLADAHK 59
           P+     +LL+ +    +    +Q+HC+ L  G LS   ++  +L+  Y        A +
Sbjct: 63  PDRQTFLYLLQTTK---FVAEVKQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQ 119

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F E+   +VVS+N++I G+ + G     L LF ++    +  D ++    L  CGQLG 
Sbjct: 120 LFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGE 179

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            +LG ++H++I K      +++ N L+DMY KC  ++ A  VF   ++KD +SW      
Sbjct: 180 TKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSW------ 233

Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
                                    N +I G A+ G++E A  + + +P+ +  SWNS++
Sbjct: 234 -------------------------NTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLI 268

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           +GY           LF  M +++V  D+ T   ++S +A + AL  G  IH   +K    
Sbjct: 269 SGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTK 328

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
                 SAL+DMY KCG +E A  +F  +  K++ TW  MITG+A +G   K +ELF  +
Sbjct: 329 IEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVM 388

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
           +   + +P+ VTF++VLAACSH+ +  D+  + F SM K Y I+P VEH   ++ L+ + 
Sbjct: 389 QA--ETKPNDVTFVSVLAACSHSGL-VDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRS 445

Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
           G +  A  +I ++       +W A+LSA     ++++A  +  E++KLE + +  Y++L 
Sbjct: 446 GRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLS 505

Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
           N+Y + G W  +  +R  M  RG++K AGCS + V+ +
Sbjct: 506 NVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVDGM 543


>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
          Length = 514

 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/469 (29%), Positives = 248/469 (52%), Gaps = 8/469 (1%)

Query: 53  SLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALA 112
           +L  AHK+F EIP+P V   N ++ G  QS K  K ++L+ E+E+  +  D Y+FT  L 
Sbjct: 27  ALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLK 86

Query: 113 ACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS 172
           AC +L     G A H K+V++       + N LI  +  CG +  A  +F +      ++
Sbjct: 87  ACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVA 146

Query: 173 WNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           W+S+ +  A+ G ++ A      +P  D +++N +I G  +  +++ A  +       + 
Sbjct: 147 WSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDV 206

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
            +WN++++GYVN     EAL +F EM+      D  T  ++LS  A L  L  G  +H  
Sbjct: 207 VTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIY 266

Query: 293 VIKQG-LDASIVVAS----ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
           +++   + +SI V +    AL+DMY+KCG ++ A  +FR +  ++L TWN +I G A + 
Sbjct: 267 ILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH- 325

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407
                IE+FE+++ ++ + P+ VTF+ V+ ACSH+    D+  +YF  M   Y I+P ++
Sbjct: 326 HAEGSIEMFEEMQRLK-VWPNEVTFIGVILACSHSG-RVDEGRKYFSLMRDMYNIEPNIK 383

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
           H   M+ ++G+ G++  A   +  +      +VWR LL A     ++++ + +  +++ +
Sbjct: 384 HYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSM 443

Query: 468 EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
             D    YV+L N+Y S G WD    +R    +  ++K  G S IE ++
Sbjct: 444 RKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIEEDD 492



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 187/410 (45%), Gaps = 26/410 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +L+A S L W +     H  +++ GF+ N +V  AL+ F+     L  A ++
Sbjct: 76  PDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASEL 135

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +  +   V+W+S+ SGY + GK  +A+ LF E+     Y D  ++   +  C +   +
Sbjct: 136 FDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMP----YKDQVAWNVMITGCLKCKEM 191

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID----KDIISWNSV 176
                +  +      E+ VV  N +I  Y  CG  ++A+G+F EM D     D+++  S+
Sbjct: 192 DSARELFDRFT----EKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSL 247

Query: 177 IAASARNGNLELAFGFLHRLPNPDTIS---------YNEVINGIAQFGDIEDAIMILSSM 227
           ++A A  G+LE        +    ++S         +N +I+  A+ G I+ AI +   +
Sbjct: 248 LSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGV 307

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
              + S+WN+++ G +  +    ++ +F EMQ   V  +E TF  ++   +    +  G 
Sbjct: 308 KDRDLSTWNTLIVG-LALHHAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGR 366

Query: 288 LIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYAR 345
              S +     ++ +I     ++DM  + GQ+E A     S+    N + W  ++     
Sbjct: 367 KYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKI 426

Query: 346 NGDLTKVIELFEQLKTVR-DLQPDSVTFLNVLAACSHTDIPFDKVSEYFE 394
            G++       E+L ++R D   D V   N+ A+    D    KV + F+
Sbjct: 427 YGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWD-GVQKVRKMFD 475



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 129/295 (43%), Gaps = 14/295 (4%)

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G ++ A  +   +P P+ S  N +L G     +  + + L+ EM+ + V  D YTF+ +L
Sbjct: 26  GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVL 85

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
              + L   + G   H  V++ G   +  V +AL+  ++ CG + IA  +F    + + V
Sbjct: 86  KACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKV 145

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFE 394
            W++M +GYA+ G + + + LF+++        D V +  ++  C       D   E F+
Sbjct: 146 AWSSMTSGYAKRGKIDEAMRLFDEMP-----YKDQVAWNVMITGCLKCK-EMDSARELFD 199

Query: 395 SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDL 454
             T+   +  T     S     G   E     + +R+ G     V   +LLSA     DL
Sbjct: 200 RFTEKDVV--TWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDL 257

Query: 455 DVARISAAEVIKLEGDSDYVYV------MLCNLYTSHGNWDVASVMRNFMRERGL 503
           +  +     +++    S  +YV       L ++Y   G+ D A  +   +++R L
Sbjct: 258 ETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDL 312


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 168/555 (30%), Positives = 269/555 (48%), Gaps = 44/555 (7%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +++VL   L+A       +Y + LHC  +K G  ++ FV  +L+  Y K   L  A K+F
Sbjct: 165 DDFVLSLALKACIRSAEYSYGRSLHCDAIKVGG-ADGFVMNSLVDMYAKAEDLECARKVF 223

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             IP  +VVSW S+ISG VQ+G     L LF ++ +  +    Y+  + + AC  L  L 
Sbjct: 224 ERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLH 283

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
            G  +H  ++K  L     I+  L+DMY KCG ++ A  VF E+   D++ W ++I    
Sbjct: 284 QGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYT 343

Query: 182 RNGN-LELAFGFL-HRLPN--PDTISYNEVINGIAQFGD--------------------- 216
           +NGN L+    FL  R  N  P++++   V++  AQ  D                     
Sbjct: 344 QNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNV 403

Query: 217 --------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
                         + +A  I   + + +  +WNS+++GY   N   +AL LF +M  + 
Sbjct: 404 VGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQG 463

Query: 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
              D  +    LS    L  L  G  IH   +K    ++I V +ALL++Y+KCG +  A 
Sbjct: 464 SSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSAR 523

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNVLAACSH 381
            +F  +  +N VTW AMI GY   GD    I LF E LK    + P+ + F ++L+ CSH
Sbjct: 524 RVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKD--GVYPNDIAFTSILSTCSH 581

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
           + +       YF+SM + + I P+++H   M+ ++ + G +  A   I  +   +   VW
Sbjct: 582 SGM-VTAGKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEDALEFIDNMPMQADTSVW 640

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            A L      S L  A  +   ++ L  +   +YV++ NLYTS+G WD +  +R +M+E+
Sbjct: 641 GAFLHGCELHSRLQFAEEAIKRMMVLHPERPDLYVLISNLYTSNGMWDKSLAIRRWMQEK 700

Query: 502 GLRKEAGCSWIEVEN 516
           GL K  GCS +  EN
Sbjct: 701 GLVKLPGCSSVGHEN 715



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 189/409 (46%), Gaps = 41/409 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+EY +  ++ A S L      + +H  ++K G +SN F+S AL+  Y K   L  A  +
Sbjct: 264 PSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCV 323

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+    +V W ++I GY Q+G    AL LF++   + I  ++ +  + L+A  QL  L
Sbjct: 324 FDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDL 383

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG +IH   VK  L    V+ N L+DMY KC +V +A  +FG + +KD+++WNS+I+  
Sbjct: 384 SLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGY 443

Query: 181 ARNGNLELAFGFLHRL----PNPDTISY---------------NEVINGIA--------- 212
           A N   + A     ++     +PD IS                 + I+G A         
Sbjct: 444 AENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHAFVSNI 503

Query: 213 -----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                      + GD+  A  +   M   NS +W +++ GY  +     ++HLFGEM   
Sbjct: 504 YVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKD 563

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEI 320
            V  ++  F+++LS  +    +T G      + +   +  S+   + ++D+ ++ G +E 
Sbjct: 564 GVYPNDIAFTSILSTCSHSGMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLED 623

Query: 321 ADSMFRSL-CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           A     ++  + +   W A + G   +  L    E  +++  +   +PD
Sbjct: 624 ALEFIDNMPMQADTSVWGAFLHGCELHSRLQFAEEAIKRMMVLHPERPD 672



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 5/178 (2%)

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV-- 263
           ++++  A  GD+  A M+    P P++ S+ ++L   V   R  +A+ L  +M+ +    
Sbjct: 102 KLLSCYAALGDLASARMVFDGTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCP 161

Query: 264 -PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322
              D++  S  L      +  ++G  +H   IK G  A   V ++L+DMY+K   +E A 
Sbjct: 162 EAQDDFVLSLALKACIRSAEYSYGRSLHCDAIKVG-GADGFVMNSLVDMYAKAEDLECAR 220

Query: 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            +F  +  +N+V+W +MI+G  +NG  +  + LF +++   ++ P   T   V+ ACS
Sbjct: 221 KVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQ-DNVPPSEYTIATVITACS 277


>gi|359489798|ref|XP_002274780.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 804

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 154/548 (28%), Positives = 275/548 (50%), Gaps = 43/548 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   +  ++RA S LG +   + +   ++K GF S V V+TAL+GFY   + +    K+
Sbjct: 8   PNHVTVLSVIRAISGLGLEDMMRVICGSVIKLGFESEVSVATALIGFYSDYD-MGIVWKI 66

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F + P   +V W++++S  V+SG+Y +A  +F  ++   +  +  S  S L AC  +G+L
Sbjct: 67  FNQTPIKDLVLWSAMVSACVKSGQYGEAFEIFRAMQYDGVEPNHVSIVSILPACANVGAL 126

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH   +K        + N L+DMY KC + + ++ VF ++++KD+ISW ++I   
Sbjct: 127 LFGKEIHGFSIKKMFHPLTNVHNSLVDMYAKCRNFKASMLVFDQILEKDLISWTTIIRGC 186

Query: 181 ARNGNLELAFGFLHRLP-----NPDTISYNEVI--------------------NGI---- 211
             N     AF    R+        +TI  + ++                    NG+    
Sbjct: 187 IENDCPREAFKAFSRMQFSCFGADETIVQDLIVAIIQADEHKFGIAFHGFLLKNGLLAFV 246

Query: 212 ----------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
                     A+FG++E AI++   +   +  SW+++++ + +      AL  F +MQS 
Sbjct: 247 SIGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMISVHAHSRHPYNALETFKQMQST 306

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           D   +E TF ++L   + + A   G  I +   K G  ++  ++SAL+D+Y K G++   
Sbjct: 307 DERPNEITFVSLLQACSLIGAQELGESIQAHATKAGYLSNAFLSSALIDLYCKFGRINQG 366

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            ++F  +  K+LV W++MI GY  NG   + +E F  +     ++P+ V F++VL+ACSH
Sbjct: 367 RAIFNEIPTKDLVCWSSMINGYGLNGCGDEALETFSNMLAC-GVKPNEVVFISVLSACSH 425

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +  +  S  F SM + YGI P + H   M+ L+ ++G +  A + + ++       +W
Sbjct: 426 CGLEHEGWS-CFSSMEQKYGIIPKLPHYACMVDLISRRGNIEGALQFVNKMPMEPDKRIW 484

Query: 442 RALLSASGAC-SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
            ALL+   +    +++A + A  +I L+  +   YV+L NLY   G W     +R  + E
Sbjct: 485 GALLAGCRSTHGSIEIAELVAERLIGLDPQNTSYYVILSNLYAEQGRWGDVERLRKLVDE 544

Query: 501 RGLRKEAG 508
           +GL+KE G
Sbjct: 545 KGLKKEMG 552


>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
          Length = 461

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 144/446 (32%), Positives = 241/446 (54%), Gaps = 35/446 (7%)

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           R  +  + Y+F   +  C ++GS+  G  IH++I+K+  E  + + N LI MY  CG + 
Sbjct: 3   RKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIG 62

Query: 157 DA---------------------------IG----VFGEMIDKDIISWNSVIAASARNGN 185
           DA                           IG    +F EM ++D+ SWNS+IA    NG+
Sbjct: 63  DARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGD 122

Query: 186 LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245
           +  A    +++P  D +S+N +I+G AQ  ++E A  + + MP  N  SWN +L  YV  
Sbjct: 123 MTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRI 182

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI-KQGLDASIVV 304
               E L +F +M  + +P +E T  ++L+  A L  L  G  IHS +   + ++  +++
Sbjct: 183 KDYDECLRMFDKMMGETMP-NEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLL 241

Query: 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
           ++ALL MY+KCG +++A  +F  +  +++V+WN+MI GY  +G   K +E+F  ++  R 
Sbjct: 242 STALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEK-RG 300

Query: 365 LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424
             P+  TF+ VL+AC+H+ +  +    YF+ M + Y I+P VEH   M+ L+G+ G +  
Sbjct: 301 PMPNDATFICVLSACAHSGMILEGWW-YFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKD 359

Query: 425 AQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484
            + +IR++       +W ALLSA    S+ ++A I A  +I+LE      Y++L N+Y +
Sbjct: 360 LEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAA 419

Query: 485 HGNWDVASVMRNFMRERGLRKEAGCS 510
            G WD   ++R  M+ERGL K  G S
Sbjct: 420 EGKWDDVEIVRKMMKERGLTKTTGLS 445



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 197/458 (43%), Gaps = 59/458 (12%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN Y    L++   ++G     +++H  ILK GF  ++FV  +L+  Y     + DA  M
Sbjct: 8   PNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAM 67

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F       +V+WNS+I GYV++G+   A  LF E+       D +S+ S +A     G +
Sbjct: 68  FEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPER----DLFSWNSMIAGYVGNGDM 123

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN------ 174
                + +K+      R +V  NC+ID Y +  ++E A  +F  M  ++++SWN      
Sbjct: 124 TAAEDLFNKMPF----RDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALY 179

Query: 175 ----------------------------SVIAASARNGNLELAFGFLH------RLPNPD 200
                                       SV+ A A  G L+    ++H      R+  PD
Sbjct: 180 VRIKDYDECLRMFDKMMGETMPNEATLVSVLTACAHLGRLDRG-KWIHSYIKNNRVIEPD 238

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +    ++   A+ G ++ A  +   M + +  SWNS++ GY    +  +AL +F +M+ 
Sbjct: 239 VLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEK 298

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVE 319
           +    ++ TF  +LS  A    +  G      + +   ++  +     ++D+  + G ++
Sbjct: 299 RGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMK 358

Query: 320 IADSMFRSLCRK-NLVTWNAMITG--YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
             + + R +  +     W A+++      N +L +++      K + +L+P  +    +L
Sbjct: 359 DLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVA-----KRLIELEPRDIGPYLLL 413

Query: 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
           +     +  +D V E    M K+ G+  T     S+ R
Sbjct: 414 SNIYAAEGKWDDV-EIVRKMMKERGLTKTTGLSSSLRR 450



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 1/108 (0%)

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M  K V  + YTF  ++     + ++  G  IH+ ++K G +  + V ++L+ MYS CG+
Sbjct: 1   MVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGR 60

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
           +  A +MF      +LVTWN+MI GY +NG++    ELFE++   RDL
Sbjct: 61  IGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPE-RDL 107


>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
           [Oryza sativa Japonica Group]
 gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
          Length = 836

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 146/473 (30%), Positives = 246/473 (52%), Gaps = 10/473 (2%)

Query: 52  NSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSAL 111
           ++L  A +M    P+P+V +WN+++SG  + G+ R+AL +   + +  +  DA + +S L
Sbjct: 240 DALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLL 299

Query: 112 AACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII 171
            +    G L+ GM IH   ++  LE  V     L+DMY KCG ++ A  V   +  +++ 
Sbjct: 300 KSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLT 359

Query: 172 SWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           +WNS++A  A  G  ++A   +  +     +PD  ++N +I G +  G    A+++L  +
Sbjct: 360 TWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQI 419

Query: 228 P----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
                +PN  SW S+++G  +     ++ +   EMQ   V     T S +L   AGL+  
Sbjct: 420 KAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQ 479

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H   +++  D  +VV++AL+DMYSK G +  A  +F S+ +KNLV  NAM+TG 
Sbjct: 480 KKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGL 539

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A +G   + IELF  +     L+PDS+TF  +L AC    +   +  EYF+SM   YG+K
Sbjct: 540 AVHGQGREAIELFHDMWN-SGLKPDSITFTALLTACRSMGL-VTEGWEYFDSMETKYGVK 597

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           PT E+   M+ L+ + G +  A   I           W ALL+      +L +A ++A  
Sbjct: 598 PTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARN 657

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +  LE  +   Y+++ NLY     +D A  ++  M+ RG+    G SWI++E 
Sbjct: 658 LFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQ 710



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/432 (27%), Positives = 194/432 (44%), Gaps = 49/432 (11%)

Query: 5   VLFHLLRASSDL-GWDT-------YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLAD 56
           VL  LLR  +DL G DT          QLH   +++G   +  V+ AL+    ++     
Sbjct: 46  VLVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALVDLLARLGRGPS 105

Query: 57  AHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
             ++  E  +      V WN  ++   ++ ++ +A+ +F E++   + AD Y+    L A
Sbjct: 106 CARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHA 165

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISW 173
           CG+ G+L+ G A+H+  +K +L+   ++   L  MY +   V  A  V   M    ++ W
Sbjct: 166 CGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPW 225

Query: 174 NSVIAASARNG----NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           N+V+A  AR G     LELA       P P+  ++N V++G ++ G              
Sbjct: 226 NAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHG-------------- 271

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
                          R+R  EAL +   M  + +  D  T S++L  +A    L  GM I
Sbjct: 272 ---------------RDR--EALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEI 314

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H   ++  L+  +   +AL+DMY+KCG+++ A  +  +L  +NL TWN+++ GYA  G  
Sbjct: 315 HCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRF 374

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409
              +EL E +K  R L PD  T+  ++   S        V        K  G+ P V   
Sbjct: 375 DIALELVELMKKNR-LDPDITTWNGLITGYSMNGQSSQAV--LLLRQIKAAGVTPNVVSW 431

Query: 410 CSMIRLMGQKGE 421
            S+I      GE
Sbjct: 432 TSLISGSCHNGE 443



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 164/359 (45%), Gaps = 10/359 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL++ ++ G   +  ++HC+ L++    +V+  TAL+  Y K   L  A K+
Sbjct: 290 PDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKV 349

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
              +   ++ +WNSL++GY  +G++  AL L   ++++ +  D  ++   +      G  
Sbjct: 350 LDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQS 409

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM----IDKDIISWNSV 176
              + +  +I    +   VV    LI      G  ED+     EM    +   +++ + +
Sbjct: 410 SQAVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVL 469

Query: 177 IAASA----RNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           + A A    +    EL    L R  + D +    +I+  ++ G +  A +I  S+   N 
Sbjct: 470 LRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNL 529

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG-MLIHS 291
              N++LTG     +  EA+ LF +M +  +  D  TF+ +L+    +  +T G     S
Sbjct: 530 VLCNAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDS 589

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQV-EIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
              K G+  +    + ++D+ ++CG + E  D + RS        W A++TG + +G+L
Sbjct: 590 METKYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNL 648



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LLRA + L      ++LHC+ L+  +  ++ VSTAL+  Y K  SL  A  +
Sbjct: 461 PSLVTMSVLLRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVI 520

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I Q ++V  N++++G    G+ R+A+ LF ++  S +  D+ +FT+ L AC  +G +
Sbjct: 521 FESIQQKNLVLCNAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLV 580

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G     S   KY ++       C++D+  +CG +++A+       ID     W +++ 
Sbjct: 581 TEGWEYFDSMETKYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLT 640

Query: 179 ASARNGNLELA 189
             + +GNL LA
Sbjct: 641 GCSIHGNLALA 651


>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 842

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 146/473 (30%), Positives = 246/473 (52%), Gaps = 10/473 (2%)

Query: 52  NSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSAL 111
           ++L  A +M    P+P+V +WN+++SG  + G+ R+AL +   + +  +  DA + +S L
Sbjct: 240 DALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLL 299

Query: 112 AACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII 171
            +    G L+ GM IH   ++  LE  V     L+DMY KCG ++ A  V   +  +++ 
Sbjct: 300 KSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLT 359

Query: 172 SWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           +WNS++A  A  G  ++A   +  +     +PD  ++N +I G +  G    A+++L  +
Sbjct: 360 TWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQI 419

Query: 228 P----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
                +PN  SW S+++G  +     ++ +   EMQ   V     T S +L   AGL+  
Sbjct: 420 KAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQ 479

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H   +++  D  +VV++AL+DMYSK G +  A  +F S+ +KNLV  NAM+TG 
Sbjct: 480 KKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGL 539

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A +G   + IELF  +     L+PDS+TF  +L AC    +   +  EYF+SM   YG+K
Sbjct: 540 AVHGQGREAIELFHDMWN-SGLKPDSITFTALLTACRSMGL-VTEGWEYFDSMETKYGVK 597

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           PT E+   M+ L+ + G +  A   I           W ALL+      +L +A ++A  
Sbjct: 598 PTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARN 657

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +  LE  +   Y+++ NLY     +D A  ++  M+ RG+    G SWI++E 
Sbjct: 658 LFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQ 710



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/432 (27%), Positives = 194/432 (44%), Gaps = 49/432 (11%)

Query: 5   VLFHLLRASSDL-GWDT-------YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLAD 56
           VL  LLR  +DL G DT          QLH   +++G   +  V+ AL+    ++     
Sbjct: 46  VLVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALVDLLARLGRGPS 105

Query: 57  AHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
             ++  E  +      V WN  ++   ++ ++ +A+ +F E++   + AD Y+    L A
Sbjct: 106 CARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHA 165

Query: 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISW 173
           CG+ G+L+ G A+H+  +K +L+   ++   L  MY +   V  A  V   M    ++ W
Sbjct: 166 CGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPW 225

Query: 174 NSVIAASARNG----NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           N+V+A  AR G     LELA       P P+  ++N V++G ++ G              
Sbjct: 226 NAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHG-------------- 271

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
                          R+R  EAL +   M  + +  D  T S++L  +A    L  GM I
Sbjct: 272 ---------------RDR--EALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEI 314

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
           H   ++  L+  +   +AL+DMY+KCG+++ A  +  +L  +NL TWN+++ GYA  G  
Sbjct: 315 HCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRF 374

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409
              +EL E +K  R L PD  T+  ++   S        V        K  G+ P V   
Sbjct: 375 DIALELVELMKKNR-LDPDITTWNGLITGYSMNGQSSQAV--LLLRQIKAAGVTPNVVSW 431

Query: 410 CSMIRLMGQKGE 421
            S+I      GE
Sbjct: 432 TSLISGSCHNGE 443



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 164/359 (45%), Gaps = 10/359 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL++ ++ G   +  ++HC+ L++    +V+  TAL+  Y K   L  A K+
Sbjct: 290 PDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKV 349

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
              +   ++ +WNSL++GY  +G++  AL L   ++++ +  D  ++   +      G  
Sbjct: 350 LDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQS 409

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM----IDKDIISWNSV 176
              + +  +I    +   VV    LI      G  ED+     EM    +   +++ + +
Sbjct: 410 SQAVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVL 469

Query: 177 IAASA----RNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232
           + A A    +    EL    L R  + D +    +I+  ++ G +  A +I  S+   N 
Sbjct: 470 LRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNL 529

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG-MLIHS 291
              N++LTG     +  EA+ LF +M +  +  D  TF+ +L+    +  +T G     S
Sbjct: 530 VLCNAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDS 589

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQV-EIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
              K G+  +    + ++D+ ++CG + E  D + RS        W A++TG + +G+L
Sbjct: 590 METKYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNL 648



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LLRA + L      ++LHC+ L+  +  ++ VSTAL+  Y K  SL  A  +
Sbjct: 461 PSLVTMSVLLRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVI 520

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I Q ++V  N++++G    G+ R+A+ LF ++  S +  D+ +FT+ L AC  +G +
Sbjct: 521 FESIQQKNLVLCNAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLV 580

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G     S   KY ++       C++D+  +CG +++A+       ID     W +++ 
Sbjct: 581 TEGWEYFDSMETKYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLT 640

Query: 179 ASARNGNLELA 189
             + +GNL LA
Sbjct: 641 GCSIHGNLALA 651


>gi|357116106|ref|XP_003559825.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Brachypodium distachyon]
          Length = 739

 Score =  245 bits (625), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 155/544 (28%), Positives = 267/544 (49%), Gaps = 46/544 (8%)

Query: 11  RASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVV 70
           R  +D  W    +QLH    +SG +++VFV  AL+  Y +   L  A ++F E+P   +V
Sbjct: 150 RGEADGVW--IVRQLHALASRSGLVADVFVGNALVTAYSRGALLGAARRVFDEMPARDLV 207

Query: 71  SWNSLISGYVQSGK-YRKALNLFVELER---SEIYADAYSFTSALAACGQLGSLQLGMAI 126
           SWN++I G  Q G    + + +F+ L +   + +  D  S  S + ACG  G ++LG  +
Sbjct: 208 SWNAMICGLAQDGDCPTEVILVFLRLLKDGGAAVRPDRISVCSVIPACGSEGKIELGRQV 267

Query: 127 HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNL 186
           HS  VK  +E  V I N L+ MY K G+   A  +   M ++D+ISW + I+       +
Sbjct: 268 HSFTVKLGVEGKVSIGNVLVAMYYKSGAAGCARKLLKSMDERDVISWTTAISMDGEEDAI 327

Query: 187 ELAFGFLHRLPNPDTISY-----------------------------------NEVINGI 211
           EL  G       P+ +++                                   N +I   
Sbjct: 328 ELFNGMRQDGVPPNEVTFVALMSALAAGCPARYGQMIHTVCLKTGVSDEAAAANSLITMY 387

Query: 212 AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271
           A+   ++DA  +   MP P   +WN++++GY       EAL +F  M     P +E TF+
Sbjct: 388 AKLRRMDDARTVFDRMPRPEIIAWNALISGYAQNELCNEALQVFSCMVRCLRP-NETTFA 446

Query: 272 TMLSGIAGLS--ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           ++LS +  +   ++ +G + H   +K GL  S  V+ AL+DMY+K G +E +   F    
Sbjct: 447 SVLSAVTAVETVSMAYGEMYHCQSLKLGLKVSEYVSGALIDMYAKRGSLEESRKAFDVTV 506

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389
            ++L+ W A+I+ +A++G+   V+ LF+ +     + PD V  L+VL AC H+    +  
Sbjct: 507 HRSLIAWTAIISAHAKHGNYDTVMNLFDDM-VCSGVAPDGVVLLSVLTACRHSGA-VNTG 564

Query: 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
            E F+SM  ++ ++P  EH   +I ++G+ G +  A+ ++ ++  G      ++LL A  
Sbjct: 565 REIFDSMPAEHHVEPWPEHYACVIDMLGRAGRLEEAEELMLQMPTGPSVSALQSLLGACR 624

Query: 450 ACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGC 509
              +  +A   A  + + E      YV+L N+Y   G+W   + +R  MRE+G+RKE G 
Sbjct: 625 IHGNTSIAERVAGILTETEPTESGAYVLLSNIYAEKGDWGGVAKVRREMREKGVRKEIGF 684

Query: 510 SWIE 513
           SW++
Sbjct: 685 SWVD 688



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 119/480 (24%), Positives = 217/480 (45%), Gaps = 58/480 (12%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRK-INSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           LH   + SG  +  FV+ +L   Y K  +S   A K+F       V S+N+++S     G
Sbjct: 59  LHGLAIASGLDAFSFVTNSLAARYAKSASSFPSAAKVFHTARARDVSSYNTILSALPDRG 118

Query: 84  KYRKALNLFVELERS-EIYADAYSFTSAL---AACGQLGSLQLGMAIHSKIVKYSLERGV 139
           +   AL     + RS ++  DA + T AL   A+ G+   + +   +H+   +  L   V
Sbjct: 119 E---ALAFAAWMLRSGDVRPDAVTLTVALSLAASRGEADGVWIVRQLHALASRSGLVADV 175

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN--LELAFGFLHRLP 197
            + N L+  Y +   +  A  VF EM  +D++SWN++I   A++G+   E+   FL  L 
Sbjct: 176 FVGNALVTAYSRGALLGAARRVFDEMPARDLVSWNAMICGLAQDGDCPTEVILVFLRLLK 235

Query: 198 N------PDTISYNEVINGIAQFGDIE--------------------------------- 218
           +      PD IS   VI      G IE                                 
Sbjct: 236 DGGAAVRPDRISVCSVIPACGSEGKIELGRQVHSFTVKLGVEGKVSIGNVLVAMYYKSGA 295

Query: 219 --DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
              A  +L SM   +  SW    T  ++ +   +A+ LF  M+   VP +E TF  ++S 
Sbjct: 296 AGCARKLLKSMDERDVISW----TTAISMDGEEDAIELFNGMRQDGVPPNEVTFVALMSA 351

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
           +A      +G +IH+  +K G+      A++L+ MY+K  +++ A ++F  + R  ++ W
Sbjct: 352 LAAGCPARYGQMIHTVCLKTGVSDEAAAANSLITMYAKLRRMDDARTVFDRMPRPEIIAW 411

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           NA+I+GYA+N    + +++F  +  VR L+P+  TF +VL+A +  +       E +   
Sbjct: 412 NALISGYAQNELCNEALQVFSCM--VRCLRPNETTFASVLSAVTAVETVSMAYGEMYHCQ 469

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
           +   G+K +     ++I +  ++G +  +++   ++      + W A++SA     + D 
Sbjct: 470 SLKLGLKVSEYVSGALIDMYAKRGSLEESRKAF-DVTVHRSLIAWTAIISAHAKHGNYDT 528


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  245 bits (625), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 151/499 (30%), Positives = 247/499 (49%), Gaps = 36/499 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINS---LADAHKMFVEIPQPSVVSWNSLISGY 79
           +Q+H  +LK+G + + +  T  +       S   L  A  +F    +P    WN +I G+
Sbjct: 60  KQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGF 119

Query: 80  VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
             S +  ++L L+  +       +AY+F S L AC  L +L+    IH++I K   E  V
Sbjct: 120 SCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDV 179

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
              N LI+ Y                               A  GN +LA     R+P P
Sbjct: 180 YAVNSLINSY-------------------------------AATGNFKLAHLLFDRIPKP 208

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           D +S+N VI G A+ G ++ A+ +   M   N+ SW ++++GYV      EAL LF EMQ
Sbjct: 209 DAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQ 268

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           + DV  D  + +  LS  A L AL  G  IHS + K  +    V+   L+DMY+KCG + 
Sbjct: 269 NSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMG 328

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F+++ RK++  W A+I+GYA +G   + I  F +++ +  ++P+ +TF  VL AC
Sbjct: 329 EALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKM-GIKPNVITFTTVLTAC 387

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           S+T +  ++    F +M +DY +KPT+EH   ++ L+ + G +  A+R I+E+      V
Sbjct: 388 SYTGL-VEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAV 446

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W ALL A     ++++       +I ++      YV   N++     WD A+  R  M+
Sbjct: 447 IWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMK 506

Query: 500 ERGLRKEAGCSWIEVENVA 518
           E+G+ K  GCS I +E   
Sbjct: 507 EQGVAKVPGCSTISLEGTT 525



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 99/191 (51%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L + L A + LG     + +H Y+ K+    +  +   L+  Y K   + +A ++
Sbjct: 274 PDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEV 333

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I + SV +W +LISGY   G  R+A++ F+E+++  I  +  +FT+ L AC   G +
Sbjct: 334 FKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLV 393

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G  I   + + Y+L+  +    C++D+  + G +++A     EM +  + + W +++ 
Sbjct: 394 EEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLK 453

Query: 179 ASARNGNLELA 189
           A   + N+EL 
Sbjct: 454 ACRIHKNIELG 464


>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 798

 Score =  245 bits (625), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 150/474 (31%), Positives = 244/474 (51%), Gaps = 34/474 (7%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           TAL+  Y +   L  A ++   +P+ + VSW +LI+ + Q G   +A+ L+ ++      
Sbjct: 319 TALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCR 378

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            +   F+S L+AC  L  L+ G  IH++ +K      V +++ LIDMY KC    DA  +
Sbjct: 379 PNISCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTI 438

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F  + +K+I+ WNS            LA G+          SYN         G + +A+
Sbjct: 439 FDTLPEKNIVCWNS------------LASGY----------SYN---------GKMVEAM 467

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   MP+ N +SWN+I++GY    +  +AL  F  M +      E TFS++L   A L 
Sbjct: 468 YLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANLC 527

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           +L  G + H+  IK G++ SI + +AL DMY+K G ++ +  MF  +  +N VTW AMI 
Sbjct: 528 SLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQ 587

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G A NG   + I L E +     + P+  TFL +L ACSH  +  ++   YFE M + +G
Sbjct: 588 GLAENGFAEESILLLEDMMAT-GMTPNEHTFLALLFACSHGGL-VEQAIHYFEKM-QAWG 644

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I P  +H   M+ ++ + G +  A+ ++ +    S    W ALLSA     + ++   +A
Sbjct: 645 ISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGERAA 704

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
             + +L  D+   YV+L N+Y S G W  A+ +R  M+   L+K+ GCSW++V 
Sbjct: 705 KRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVR 758



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 159/328 (48%), Gaps = 40/328 (12%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV   T ++    K   +A+A +++ + P  SV  + + ISG+V++  +  AL +F ++ 
Sbjct: 181 NVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMV 240

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS-LERGVVIANCLIDMYGKCGSV 155
              +  +  +F   + AC   G   L M+I    +K +  E  + + N LI +Y + G  
Sbjct: 241 SCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFFESSIEVQNSLITLYLRMGDA 300

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFG 215
             A  VF EM  KD++SW +++   + +G+L+ A   L  +P  + +S+  +I    Q G
Sbjct: 301 AAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRG 360

Query: 216 DIEDAIMILSSMPS----PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271
           +  +A+ + S M +    PN S                                    FS
Sbjct: 361 NAAEAVKLYSQMLADGCRPNIS-----------------------------------CFS 385

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
           ++LS  A L  L  G  IH+  +K G   ++ V+S+L+DMY KC +   A ++F +L  K
Sbjct: 386 SVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEK 445

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQL 359
           N+V WN++ +GY+ NG + + + LF+++
Sbjct: 446 NIVCWNSLASGYSYNGKMVEAMYLFKKM 473



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 110/234 (47%), Gaps = 4/234 (1%)

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS---WNSV 176
           L L +++H+  V+  +     +A+ L+  Y       +    FG+ +     S   ++ +
Sbjct: 98  LPLALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYDFM 157

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
           +    + G++  A G    +P  + +SY  +++ + + G + +A+ +    PS + + + 
Sbjct: 158 VHEHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFT 217

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           + ++G+V       AL +F +M S  V  +  TF  M+    G       M I    IK 
Sbjct: 218 ATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKS 277

Query: 297 G-LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
              ++SI V ++L+ +Y + G    A  +F  +  K++V+W A++  Y+ +GDL
Sbjct: 278 NFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDL 331


>gi|2191182|gb|AAB61067.1| similar to N. tabacum membrane-associated salt-inducible protein
           (PID:g473874) [Arabidopsis thaliana]
          Length = 597

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 164/525 (31%), Positives = 265/525 (50%), Gaps = 38/525 (7%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVV---------SWNSL 75
           +H  IL  G   +V +  +L+  Y        A  +F      S V         SWN++
Sbjct: 53  VHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSASWNTV 112

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135
           IS + QSG+  KAL LF  +E S    ++ S T A++AC +L  L+ G  IH K VK   
Sbjct: 113 ISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGF 172

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195
           E    + + L+DMYGKC  +E A  VF +M  K +++WNS+I      G+ +     L+R
Sbjct: 173 ELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNR 232

Query: 196 L----PNPDTISYNEVINGIA--------QFGDIEDAIMILSSMPSPNSSSWNSILTGYV 243
           +      P   +   ++   +        +F     A  + S      + SWN +++ Y+
Sbjct: 233 MIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHANLAETVFSKTQKDVAESWNVMISSYI 292

Query: 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV 303
           +     +A+ ++ +M S  V  D  TF+++L   + L+AL  G  IH  + +  L+   +
Sbjct: 293 SVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDEL 352

Query: 304 VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363
           + SALLDMYSKCG  + A  +F S+ +K++V+W  MI+ Y  +G   + +  F++++   
Sbjct: 353 LLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKF- 411

Query: 364 DLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW 423
            L+PD VT L VL+AC H  +  D+  ++F  M   YGI+P +EH   MI ++G+ G + 
Sbjct: 412 GLKPDGVTLLAVLSACGHAGL-IDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLL 470

Query: 424 RAQRMIRELGFGSYGVVWRALLSA--SGACSDLD------VARISAAEVIKLEGDSDYVY 475
            A  +I++    S       LLS   S  C  L+      +AR+    +++   D    Y
Sbjct: 471 EAYEIIQQTPETSDNA---ELLSTLFSACCLHLEHSLGDRIARL----LVENYPDDASTY 523

Query: 476 VMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAH 520
           ++L NLY S  +WD A  +R  M+E GLRK+ GCSWIE+ +   H
Sbjct: 524 MVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCH 568



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 159/331 (48%), Gaps = 13/331 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L   + A S L W    +++H   +K GF  + +V++AL+  Y K + L  A ++
Sbjct: 139 PNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREV 198

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++P+ S+V+WNS+I GYV  G  +  + +   +          + TS L AC +  +L
Sbjct: 199 FQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNL 258

Query: 121 QLGMAIHSKIVK--YSLERGVVIA--NCLIDMYGKCGSVEDAIGVFGEM----IDKDIIS 172
             G  IH+ + +  +S  +  V    N +I  Y   G+   A+ V+ +M    +  D+++
Sbjct: 259 LHGKFIHANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVT 318

Query: 173 WNSVIAASARNGNLE----LAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP 228
           + SV+ A ++   LE    +           D +  + +++  ++ G+ ++A  I +S+P
Sbjct: 319 FTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIP 378

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             +  SW  +++ Y +  +  EAL+ F EMQ   +  D  T   +LS       +  G+ 
Sbjct: 379 KKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLK 438

Query: 289 IHSCV-IKQGLDASIVVASALLDMYSKCGQV 318
             S +  K G++  I   S ++D+  + G++
Sbjct: 439 FFSQMRSKYGIEPIIEHYSCMIDILGRAGRL 469



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 1/165 (0%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      +L A S L      +Q+H  I +S   ++  + +AL+  Y K  +  +A ++
Sbjct: 314 PDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRI 373

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  IP+  VVSW  +IS Y   G+ R+AL  F E+++  +  D  +  + L+ACG  G +
Sbjct: 374 FNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLI 433

Query: 121 QLGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGE 164
             G+   S++  KY +E  +   +C+ID+ G+ G + +A  +  +
Sbjct: 434 DEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQ 478


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 156/545 (28%), Positives = 266/545 (48%), Gaps = 77/545 (14%)

Query: 16  LGWDTYCQQLHCYILKSGF-LSNVFVSTALMGFYRK--------INSLADAHKMFVEIPQ 66
           +G +  C Q+HC ++K+G    +  V  AL+  Y K         +++  A K+F E+P+
Sbjct: 161 VGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPK 220

Query: 67  PSVVSW-------------------------------NSLISGYVQSGKYRKALNLFVEL 95
              ++W                               N++ISGYV  G +++AL L  ++
Sbjct: 221 RDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKM 280

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG----VVIANCLIDMYGK 151
               I  D  ++T+ ++AC  +GS Q+G  +H+ I+K  L       + ++N LI +Y K
Sbjct: 281 RFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCK 340

Query: 152 CGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGI 211
              V++A  +F                               + +P  + I++N +++G 
Sbjct: 341 NNKVDEARKIF-------------------------------YAMPVRNIITWNAILSGY 369

Query: 212 AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271
              G +E+A      MP  N  +   +++G        E L LF +M+       ++ F+
Sbjct: 370 VNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFA 429

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
             L+  + L AL  G  +H+ ++  G ++S+ V +A++ MY+KCG VE A+S+F ++   
Sbjct: 430 GALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSV 489

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE 391
           +LV+WN+MI    ++G   K IELF+Q+     + PD +TFL VL ACSH  +  +K   
Sbjct: 490 DLVSWNSMIAALGQHGHGVKAIELFDQMLK-EGVFPDRITFLTVLTACSHAGL-VEKGRH 547

Query: 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC 451
           YF SM + YGI P  +H   M+ L  + G    A+ +I  +       VW ALL+     
Sbjct: 548 YFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIH 607

Query: 452 SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSW 511
            ++D+   +A ++ KL   +D  YV+L N+Y   G W+  + +R  MR++ +RKE  CSW
Sbjct: 608 GNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSW 667

Query: 512 IEVEN 516
           IEVEN
Sbjct: 668 IEVEN 672



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/482 (23%), Positives = 221/482 (45%), Gaps = 82/482 (17%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVS----------- 71
           + +H +++ SGF         L+  Y K ++L  A ++F EIP P  ++           
Sbjct: 33  RAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCAL 92

Query: 72  ----------------------WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
                                 +N++I+GY  +G    AL LF  + R +   D ++FTS
Sbjct: 93  GNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTS 152

Query: 110 ALAACGQ-LGSLQLGMAIHSKIVKYSLERGVV---IANCLIDMYGKCGSVEDAIGVFGEM 165
            L+A    +G+ Q    +H  +VK  +  G V   + N L+ +Y K  S    +G     
Sbjct: 153 VLSALVLFVGNEQQCGQMHCAVVKTGM--GCVSSSVLNALLSVYVKRAS---ELG----- 202

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILS 225
                IS +++++A                +P  D +++  +I G  +  D+  A  +  
Sbjct: 203 -----ISCSAMVSARK----------LFDEMPKRDELTWTTMITGYVRNDDLNGAREVFE 247

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           +M     ++WN++++GYV+     EAL L  +M+   +  D+ T++T++S  A + +   
Sbjct: 248 AMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQM 307

Query: 286 GMLIHSCVIKQGLDAS----IVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           G  +H+ ++K  L+ +    + V++AL+ +Y K  +V+ A  +F ++  +N++TWNA+++
Sbjct: 308 GKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILS 367

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GY   G + +    FE++  V++L    +T   +++  +      D+  + F+ M  D G
Sbjct: 368 GYVNAGRMEEAKSFFEEM-PVKNL----LTLTVMISGLAQNGFG-DEGLKLFKQMRLD-G 420

Query: 402 IKPT------VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLD 455
            +P           CS++  + + G    AQ  +  LG+ S   V  A++S    C  ++
Sbjct: 421 FEPCDFAFAGALTACSVLGAL-ENGRQLHAQ--LVHLGYESSLSVGNAMISMYAKCGVVE 477

Query: 456 VA 457
            A
Sbjct: 478 AA 479



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 128/258 (49%), Gaps = 39/258 (15%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSN----VFVSTALMGFYRKINSLADAHKMFVEI 64
           ++ A +++G     +Q+H YILK+    N    + VS AL+  Y K N + +A K+F  +
Sbjct: 295 IISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAM 354

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEI--------------YADA------ 104
           P  ++++WN+++SGYV +G+  +A + F E+    +              + D       
Sbjct: 355 PVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFK 414

Query: 105 -----------YSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
                      ++F  AL AC  LG+L+ G  +H+++V    E  + + N +I MY KCG
Sbjct: 415 QMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCG 474

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPNPDTISYNEVIN 209
            VE A  VF  M   D++SWNS+IAA  ++G+    +EL    L     PD I++  V+ 
Sbjct: 475 VVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLT 534

Query: 210 GIAQFGDIEDAIMILSSM 227
             +  G +E      +SM
Sbjct: 535 ACSHAGLVEKGRHYFNSM 552



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 120/274 (43%), Gaps = 45/274 (16%)

Query: 99  EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
            + A+ Y+    L +     S  L  A+H+ ++    +      N L++MY K  ++  A
Sbjct: 8   RLLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYA 67

Query: 159 IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP--NPDTISYNEVINGIAQFGD 216
             +F E+ + D I+  ++I A    GNLEL     +  P    D++ YN +I G A  GD
Sbjct: 68  RQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGD 127

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
                                   G+        AL LF  M+  D   D++TF+++LS 
Sbjct: 128 ------------------------GH-------SALELFRAMRRDDFRPDDFTFTSVLSA 156

Query: 277 IAGL--SALTWGMLIHSCVIKQGLD-ASIVVASALLDMYSK--------CGQVEIADSMF 325
           +     +    G + H  V+K G+   S  V +ALL +Y K        C  +  A  +F
Sbjct: 157 LVLFVGNEQQCGQM-HCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLF 215

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
             + +++ +TW  MITGY RN DL    E+FE +
Sbjct: 216 DEMPKRDELTWTTMITGYVRNDDLNGAREVFEAM 249



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P ++     L A S LG     +QLH  ++  G+ S++ V  A++  Y K   +  A  +
Sbjct: 423 PCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESV 482

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           FV +P   +VSWNS+I+   Q G   KA+ LF ++ +  ++ D  +F + L AC   G +
Sbjct: 483 FVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLV 542

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD-IISWNSVIA 178
           + G    +S +  Y +         ++D++ + G    A  V   M  K     W +++A
Sbjct: 543 EKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLA 602

Query: 179 ASARNGNLELA 189
               +GN++L 
Sbjct: 603 GCRIHGNMDLG 613


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 156/531 (29%), Positives = 254/531 (47%), Gaps = 70/531 (13%)

Query: 22  CQQLHCYILKSGFLSNVFVSTALMGFYRKINS----LADAHKMFVEIPQPSVVSW----- 72
           C Q H   LKSG      VS AL+  Y K  S    L  A K+F EI +    SW     
Sbjct: 168 CVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMT 227

Query: 73  ---------------------------NSLISGYVQSGKYRKALNLFVELERSEIYADAY 105
                                      N++ISGYV  G Y++AL +   +  S I  D +
Sbjct: 228 GYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEF 287

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
           ++ S + AC   G LQLG  +H+ +++   +      N L+ +Y KCG  ++A  +F +M
Sbjct: 288 TYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKM 346

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILS 225
                                          P  D +S+N +++G    G I +A +I  
Sbjct: 347 -------------------------------PAKDLVSWNALLSGYVSSGHIGEAKLIFK 375

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
            M   N  SW  +++G        E L LF  M+ +     +Y FS  +   A L A   
Sbjct: 376 EMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCN 435

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
           G   H+ ++K G D+S+   +AL+ MY+KCG VE A  +FR++   + V+WNA+I    +
Sbjct: 436 GQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQ 495

Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
           +G   + ++++E++   + ++PD +T L VL ACSH  +  D+  +YF+SM   Y I P 
Sbjct: 496 HGHGAEAVDVYEEMLK-KGIRPDRITLLTVLTACSHAGL-VDQGRKYFDSMETVYRIPPG 553

Query: 406 VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465
            +H   +I L+ + G+   A+ +I  L F     +W ALLS      ++++  I+A ++ 
Sbjct: 554 ADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLF 613

Query: 466 KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            L  + D  Y++L N++ + G W+  + +R  MR+RG++KE  CSWIE+E 
Sbjct: 614 GLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMET 664



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/482 (21%), Positives = 217/482 (45%), Gaps = 89/482 (18%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS-------------- 68
           + +H  I+  GF     +   L+  Y K + L  A ++F EI +P               
Sbjct: 34  RAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCAS 93

Query: 69  -------------------VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
                               V +N++I+G+  +     A+NLF +++      D ++F S
Sbjct: 94  GDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFAS 153

Query: 110 ALAACGQLGSLQLG-MAIHSKIVKYSLERGVVIANCLIDMYGKCGS----VEDAIGVFGE 164
            LA    +   +   +  H+  +K        ++N L+ +Y KC S    +  A  VF E
Sbjct: 154 VLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDE 213

Query: 165 MIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMIL 224
           +++KD  SW +++    +NG  +L                 E++ G      ++D + ++
Sbjct: 214 ILEKDERSWTTMMTGYVKNGYFDLG---------------EELLEG------MDDNMKLV 252

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
                    ++N++++GYVNR    EAL +   M S  + +DE+T+ +++   A    L 
Sbjct: 253 ---------AYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQ 303

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
            G  +H+ V+++  D S    ++L+ +Y KCG+ + A ++F  +  K+LV+WNA+++GY 
Sbjct: 304 LGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYV 362

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK------ 398
            +G + +   +F+++K     + + ++++ +++  +      + + + F  M +      
Sbjct: 363 SSGHIGEAKLIFKEMK-----EKNILSWMIMISGLAENGFGEEGL-KLFSCMKREGFEPC 416

Query: 399 DYGIKPTVEHCCSMIRLMGQ--KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456
           DY     ++ C     ++G    G+ + AQ +  ++GF S      AL++    C  ++ 
Sbjct: 417 DYAFSGAIKSCA----VLGAYCNGQQYHAQLL--KIGFDSSLSAGNALITMYAKCGVVEE 470

Query: 457 AR 458
           AR
Sbjct: 471 AR 472



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 147/345 (42%), Gaps = 49/345 (14%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +E+    ++RA +  G     +Q+H Y+L+    S  F   +L+  Y K     +A  +F
Sbjct: 285 DEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHF-DNSLVSLYYKCGKFDEARAIF 343

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKA-------------------------------LN 90
            ++P   +VSWN+L+SGYV SG   +A                               L 
Sbjct: 344 EKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLK 403

Query: 91  LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
           LF  ++R       Y+F+ A+ +C  LG+   G   H++++K   +  +   N LI MY 
Sbjct: 404 LFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYA 463

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPNPDTISYNE 206
           KCG VE+A  VF  M   D +SWN++IAA  ++G+    +++    L +   PD I+   
Sbjct: 464 KCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLT 523

Query: 207 VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266
           V+   +  G ++       SM      +   I  G  +  R+ + L   G+    +  ++
Sbjct: 524 VLTACSHAGLVDQGRKYFDSM-----ETVYRIPPGADHYARLIDLLCRSGKFSDAESVIE 578

Query: 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
              F          +A  W  L+  C +   ++  I+ A  L  +
Sbjct: 579 SLPFKP--------TAEIWEALLSGCRVHGNMELGIIAADKLFGL 615



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 115/248 (46%), Gaps = 38/248 (15%)

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           SLQL  A+H  I+ +  +    I N LID+Y K   +  A  +F E+ + D I+  ++++
Sbjct: 29  SLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVS 88

Query: 179 ASARNGNLELAFGFLHRLP--NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
               +G++ LA G   + P    DT+ YN +I G +   D                    
Sbjct: 89  GYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNND-------------------- 128

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS-ALTWGMLIHSCVIK 295
               GY        A++LF +M+ +    D +TF+++L+G+A ++      +  H+  +K
Sbjct: 129 ----GY-------SAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALK 177

Query: 296 QGLDASIVVASALLDMYSKCGQ----VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
            G      V++AL+ +YSKC      +  A  +F  +  K+  +W  M+TGY +NG    
Sbjct: 178 SGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDL 237

Query: 352 VIELFEQL 359
             EL E +
Sbjct: 238 GEELLEGM 245



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 6/193 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYC--QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58
           P +Y     +++ + LG   YC  QQ H  +LK GF S++    AL+  Y K   + +A 
Sbjct: 415 PCDYAFSGAIKSCAVLG--AYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEAR 472

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           ++F  +P    VSWN+LI+   Q G   +A++++ E+ +  I  D  +  + L AC   G
Sbjct: 473 QVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAG 532

Query: 119 SLQLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNSV 176
            +  G     S    Y +  G      LID+  + G   DA  V   +  K     W ++
Sbjct: 533 LVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEAL 592

Query: 177 IAASARNGNLELA 189
           ++    +GN+EL 
Sbjct: 593 LSGCRVHGNMELG 605



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 5/124 (4%)

Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
           ++L     +H  +I  G      + + L+D+Y K  ++  A  +F  +   + +    M+
Sbjct: 28  TSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMV 87

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
           +GY  +GD+T    +FE+         D+V +  ++   SH +  +  ++ + +   K  
Sbjct: 88  SGYCASGDITLARGVFEKAPVC---MRDTVMYNAMITGFSHNNDGYSAINLFCK--MKHE 142

Query: 401 GIKP 404
           G KP
Sbjct: 143 GFKP 146


>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 851

 Score =  244 bits (624), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 141/468 (30%), Positives = 244/468 (52%), Gaps = 10/468 (2%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
           A +M  + P+P++ +WN+++SG  + G+ R+AL +   +    ++ DA + +S L +   
Sbjct: 260 AGRMARDGPEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTVSSLLKSVAN 319

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
            G ++ GM +H   +++ L         L+DMY KCG ++ A  VF  +  +++ +WNS+
Sbjct: 320 AGMVRHGMEVHCFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHRNLATWNSL 379

Query: 177 IAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMP---- 228
           +A  A  G  E A   + R+     +P+  ++N +I G +  G    A+++L  +     
Sbjct: 380 VAGHAYAGQFEAALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQIKAAGL 439

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
           +PN  SW S+++G  +     ++ + F EMQ   V     T   +L   AGL+ L  G  
Sbjct: 440 TPNVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALLKKGKE 499

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           +H   +++  D  +VV +AL+DMYSK G +  A  +F  +  KNLV  NAM+TG A +G 
Sbjct: 500 LHCFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLAVHGQ 559

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
             + I LF  L     L+PDS+TF  +L AC    +   +  EYF++M   YG+ PT E+
Sbjct: 560 SHEAITLFHDLWR-SGLKPDSITFTALLTACRSMGL-ITEGWEYFDNMETKYGVVPTAEN 617

Query: 409 CCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE 468
              M+ L+ + G +  A  +I          +W ALL+      +LD+A ++A  + +LE
Sbjct: 618 YACMVDLLARSGYLDEAMALIERSPVDPGASLWGALLTGCSIHGNLDLAEVAARNLFRLE 677

Query: 469 GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
             +   Y+M+ +LY     +D A  ++  M+ RG+    G SWI++E 
Sbjct: 678 PYNSANYLMIMSLYEHEQMYDEADSLKYAMKARGVNTRPGWSWIQIEQ 725



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 180/372 (48%), Gaps = 44/372 (11%)

Query: 10  LRASSDLGWDTYCQQLHCYILKSGFLSN-VFVSTALMGFYRKINSLADAHKMFVEIPQ-- 66
           LRA+  L       QLH   +++G  +    V+ AL     ++     + ++  E  +  
Sbjct: 75  LRAARRLA-----PQLHSLAVRAGHATREPRVACALSDLLARLGRGPSSRRLLEEADESE 129

Query: 67  --PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
                V WN  ++   ++G++ +A+  F E++   + AD Y+    L ACG+  + + G 
Sbjct: 130 GGKDAVLWNKQVAMLAEAGEWDEAIGAFREMQARGVAADGYALARVLHACGRAAARREGK 189

Query: 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG 184
           A+H+    ++L+ G+V A+ L+  +          G++ E  D        V AA+A   
Sbjct: 190 AVHA----HALKAGLVDAHPLVPGF--------LAGMYAEGAD--------VAAATAV-- 227

Query: 185 NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM----PSPNSSSWNSILT 240
                   L   P P +++++ V+    + G ++DA+ +   M    P P  ++WN++L+
Sbjct: 228 -------LLRATPPPRSVAWDAVVACCVRLGLVDDAMELAGRMARDGPEPTLATWNAVLS 280

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           G     R  EAL +   M  + +  D  T S++L  +A    +  GM +H   ++ GL  
Sbjct: 281 GCARHGRDREALAVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGMEVHCFFLRHGLVP 340

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
                +AL+DMY+KCG+++ A  +F +L  +NL TWN+++ G+A  G     +EL E++K
Sbjct: 341 DAYTGTALVDMYAKCGRLDCARRVFDTLEHRNLATWNSLVAGHAYAGQFEAALELVERMK 400

Query: 361 TVRDLQPDSVTF 372
             R L P+  T+
Sbjct: 401 RNR-LDPNVTTW 411



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 91/416 (21%), Positives = 188/416 (45%), Gaps = 25/416 (6%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   +  LL++ ++ G   +  ++HC+ L+ G + + +  TAL+  Y K   L  A ++
Sbjct: 305 PDATTVSSLLKSVANAGMVRHGMEVHCFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRV 364

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   ++ +WNSL++G+  +G++  AL L   ++R+ +  +  ++   +      G  
Sbjct: 365 FDTLEHRNLATWNSLVAGHAYAGQFEAALELVERMKRNRLDPNVTTWNGLITGYSLNGLS 424

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM----IDKDIISWNSV 176
              M +  +I    L   VV    LI      G  ED+   F EM    +   +++   +
Sbjct: 425 SQAMLLLRQIKAAGLTPNVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVL 484

Query: 177 IAASA-----RNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
           + A A     + G  EL    L R  + D +    +I+  ++ G +  A  I   + + N
Sbjct: 485 LRACAGLALLKKGK-ELHCFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKN 543

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG-MLIH 290
               N++LTG     +  EA+ LF ++    +  D  TF+ +L+    +  +T G     
Sbjct: 544 LVCCNAMLTGLAVHGQSHEAITLFHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFD 603

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF-RSLCRKNLVTWNAMITGYARNGDL 349
           +   K G+  +    + ++D+ ++ G ++ A ++  RS        W A++TG + +G+L
Sbjct: 604 NMETKYGVVPTAENYACMVDLLARSGYLDEAMALIERSPVDPGASLWGALLTGCSIHGNL 663

Query: 350 TKVIELFE-QLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
               +L E   + +  L+P +S  +L +++   H  +       Y E+ +  Y +K
Sbjct: 664 ----DLAEVAARNLFRLEPYNSANYLMIMSLYEHEQM-------YDEADSLKYAMK 708


>gi|413932452|gb|AFW67003.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 719

 Score =  244 bits (624), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 145/530 (27%), Positives = 265/530 (50%), Gaps = 42/530 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H   +++GF ++ ++ + L+  Y +  SL  A ++F  +  P VV + SL+S   ++
Sbjct: 156 EQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRN 215

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+  +A+++  ++ R  +  + ++ TS LA C +     +G  IH  ++K    + V  +
Sbjct: 216 GELARAVDVLCQMTRQGLQPNEHTMTSMLAECPR----GIGEQIHGYMLKVMGSQSVYAS 271

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------ 196
             LID Y + G    A  VF  +  K+++SW S++    R+G L+ A      +      
Sbjct: 272 TALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGVQ 331

Query: 197 PN------------------------------PDTISYNEVINGIAQFGDIEDAIMILSS 226
           PN                               D    N +++   + G + +   +L  
Sbjct: 332 PNEFAFSIALSACGSVCLGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSELEAVLGK 391

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           + +P+  SW + ++         +A+ L  +M S+    ++Y FS+ LS  A L+ L  G
Sbjct: 392 IENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLHQG 451

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
             +H   +K G D  +   +AL++MYSKCG++  A   F  +   ++++WN++I G A++
Sbjct: 452 RQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGLAQH 511

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           GD    +E F ++ +  D +PD  TFL+VL  C+H  +   +   +F  MT  YG+ PT 
Sbjct: 512 GDANLALETFSEMCS-SDWRPDDSTFLSVLVGCNHAGL-VKEGETFFRQMTDRYGLTPTP 569

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
            H   MI ++G+ G    A RMI  + F    ++W+ LL++     +LD+ +++A ++++
Sbjct: 570 SHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAADKLME 629

Query: 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           L       YV++ NLY  H  W  A  +R  M E G++K+AG SWIEV+N
Sbjct: 630 LSERDSASYVLMSNLYAMHEEWRDAERVRRRMDEIGVKKDAGWSWIEVKN 679



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 178/366 (48%), Gaps = 39/366 (10%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           K   L DA  +F  +P+ +VV+W + ISG  ++G+   A  +F ++  S +  + ++  +
Sbjct: 82  KSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFACNA 141

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
           ALAAC   G+L LG  +HS  V+        I +CLI++Y +CGS+  A  VF  M   D
Sbjct: 142 ALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPD 201

Query: 170 IISWNSVIAASARNGNLELAFGFLHRL------PNPDTIS---------YNEVING---- 210
           ++ + S+++A  RNG L  A   L ++      PN  T++           E I+G    
Sbjct: 202 VVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPRGIGEQIHGYMLK 261

Query: 211 ----------------IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
                            +++GD   A  +  ++ S N  SW S++   +   R+ +AL +
Sbjct: 262 VMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRV 321

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F EM S+ V  +E+ FS  LS      ++  G  IH   IK+ L   I V++ALL MY +
Sbjct: 322 FSEMISEGVQPNEFAFSIALSACG---SVCLGRQIHCSAIKRDLMTDIRVSNALLSMYGR 378

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
            G V   +++   +   +LV+W A I+   +NG   K + L  Q+ +     P+   F +
Sbjct: 379 SGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHS-EGFTPNDYAFSS 437

Query: 375 VLAACS 380
            L++C+
Sbjct: 438 GLSSCA 443



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/436 (24%), Positives = 187/436 (42%), Gaps = 93/436 (21%)

Query: 1   PNEYVLFHLL-RASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           PNE+ +  +L      +G     +Q+H Y+LK     +V+ STAL+ FY +      A  
Sbjct: 235 PNEHTMTSMLAECPRGIG-----EQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKT 289

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  +   +VVSW S++   ++ G+   AL +F E+    +  + ++F+ AL+AC   GS
Sbjct: 290 VFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSAC---GS 346

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           + LG  IH   +K  L   + ++N L+ MYG+ G V +   V G++ + D++SW + I+A
Sbjct: 347 VCLGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISA 406

Query: 180 SARNGNLELAFGFLHRL------PNPDTISY----------------------------- 204
           + +NG  E A   L ++      PN    S                              
Sbjct: 407 NFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFK 466

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +IN  ++ G I  A +    M + +  SWNS++ G         AL  F EM S
Sbjct: 467 VCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGLAQHGDANLALETFSEMCS 526

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            D   D+ TF ++L G             H+ ++K+G                       
Sbjct: 527 SDWRPDDSTFLSVLVGCN-----------HAGLVKEG----------------------- 552

Query: 321 ADSMFRSLCRKNLVT-----WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
            ++ FR +  +  +T     +  MI    RNG   + + + E +      +PD + +  +
Sbjct: 553 -ETFFRQMTDRYGLTPTPSHYACMIDMLGRNGRFAEALRMIENMP----FEPDVLIWKTL 607

Query: 376 LAACS-HTDIPFDKVS 390
           LA+C  H ++   K++
Sbjct: 608 LASCKLHRNLDIGKLA 623



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 144/323 (44%), Gaps = 30/323 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+     L A    G     +Q+HC  +K   ++++ VS AL+  Y +   +++   +
Sbjct: 332 PNEFAFSIALSAC---GSVCLGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSELEAV 388

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
             +I  P +VSW + IS   Q+G   KA+ L +++       + Y+F+S L++C  L  L
Sbjct: 389 LGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALL 448

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H   +K   +  V   N LI+MY KCG +  A   F  M   D++SWNS+I   
Sbjct: 449 HQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGL 508

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A++G+  LA      + +    PD  ++  V+ G    G +++       M      +P 
Sbjct: 509 AQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTPT 568

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
            S +  ++       R  EAL +      +++P +                L W  L+ S
Sbjct: 569 PSHYACMIDMLGRNGRFAEALRMI-----ENMPFEP-------------DVLIWKTLLAS 610

Query: 292 CVIKQGLDASIVVASALLDMYSK 314
           C + + LD   + A  L+++  +
Sbjct: 611 CKLHRNLDIGKLAADKLMELSER 633



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 99/186 (53%), Gaps = 1/186 (0%)

Query: 194 HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
           H  P PD +   + ++G+ + G + DA+ +   MP  N  +W + ++G     R   A  
Sbjct: 63  HAAPPPDVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAAT 122

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
           +F +M    V  +++  +  L+  A   AL  G  +HS  ++ G  A   + S L+++YS
Sbjct: 123 MFADMLESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYS 182

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           +CG +  A+ +FR +   ++V + ++++   RNG+L + +++  Q+ T + LQP+  T  
Sbjct: 183 RCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQM-TRQGLQPNEHTMT 241

Query: 374 NVLAAC 379
           ++LA C
Sbjct: 242 SMLAEC 247



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 123/284 (43%), Gaps = 53/284 (18%)

Query: 140 VIANC-LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL-- 196
           V+ +C  +D   K G + DA+ +F  M  K++++W + I+   RNG  E A      +  
Sbjct: 70  VVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLE 129

Query: 197 ----PNP-------------DTISYNEVINGIA--------------------QFGDIED 219
               PN                +   E ++ +A                    + G +  
Sbjct: 130 SGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRA 189

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS---- 275
           A  +   M +P+   + S+++       +  A+ +  +M  + +  +E+T ++ML+    
Sbjct: 190 AEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPR 249

Query: 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335
           GI        G  IH  ++K     S+  ++AL+D YS+ G    A ++F +L  KN+V+
Sbjct: 250 GI--------GEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVS 301

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           W +M+    R+G L   + +F ++ +   +QP+   F   L+AC
Sbjct: 302 WCSMMQLCIRDGRLDDALRVFSEMIS-EGVQPNEFAFSIALSAC 344


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/503 (27%), Positives = 261/503 (51%), Gaps = 14/503 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           + +H  +    F  N  +   LM  Y        A  +F  IP+ +V+ +N +I  Y+ +
Sbjct: 52  KNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNN 111

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
             Y  AL +F ++       D Y++   L AC    +L++G+ +H  + K  L+  + + 
Sbjct: 112 HLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVG 171

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PN 198
           N LI +YGKCG + +A  V  EM  KD++SWNS++A  A+N   + A      +      
Sbjct: 172 NGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQK 231

Query: 199 PDTISYNEVINGIAQFGD-----IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
           PD  +   ++  +          +E+  M   ++   +  SWN +++ Y+  +   +++ 
Sbjct: 232 PDACTMASLLPAVTNTSSENVLYVEEMFM---NLEKKSLVSWNVMISVYMKNSMPGKSVD 288

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
           L+ +M   +V  D  T +++L     LSAL  G  IH  V ++ L  ++++ ++L+DMY+
Sbjct: 289 LYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYA 348

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           +CG +E A  +F  +  +++ +W ++I+ Y   G     + LF +++      PDS+ F+
Sbjct: 349 RCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQ-SPDSIAFV 407

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
            +L+ACSH+ +  ++   YF+ MT DY I P +EH   ++ L+G+ G V  A  +I+++ 
Sbjct: 408 AILSACSHSGL-LNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMP 466

Query: 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
                 VW ALLS+    S++D+  ++A ++++L  +    YV+L N+Y   G W   + 
Sbjct: 467 MKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTA 526

Query: 494 MRNFMRERGLRKEAGCSWIEVEN 516
           +R+ M+ R +RK  G S +E+ N
Sbjct: 527 IRSLMKRRRIRKMPGISNVELNN 549



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 93/192 (48%), Gaps = 2/192 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+      +LRA  DL      +++H Y+ +     N+ +  +L+  Y +   L DA ++
Sbjct: 300 PDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRV 359

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    V SW SLIS Y  +G+   A+ LF E++ S    D+ +F + L+AC   G L
Sbjct: 360 FDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLL 419

Query: 121 QLGMAIHSKIV-KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G     ++   Y +   +    CL+D+ G+ G V++A  +  +M +  +   W ++++
Sbjct: 420 NEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLS 479

Query: 179 ASARNGNLELAF 190
           +     N+++  
Sbjct: 480 SCRVYSNMDIGI 491


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/525 (26%), Positives = 276/525 (52%), Gaps = 31/525 (5%)

Query: 18  WDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLIS 77
           + ++ +Q H   +K     +V+     +G   +  ++  A ++F E+P    VSWNS+I+
Sbjct: 27  FHSFNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIIT 86

Query: 78  GYVQSGKYRKALNLF------------------VELERSEIYADAYSFTSALAA--CGQL 117
           GY ++G + ++  LF                  +E ER +   +A+ +  A+        
Sbjct: 87  GYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERID---EAWQYFQAMPQRNTASW 143

Query: 118 GSLQLGMAIHSKIVKYSL------ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII 171
            ++  G+  + ++ + S        R V+    ++D Y K G +E A  +F  M  K+++
Sbjct: 144 NAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVV 203

Query: 172 SWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
           SW  +I+    NG  + A     ++P+ + ++   +I G  + G  + A ++   +P  +
Sbjct: 204 SWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRD 263

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
            +SWN+++TGY       EAL L  +M    +  D  T  ++L+  + L++L  G   H 
Sbjct: 264 LASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHV 323

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
            V+K G ++ I + +AL+ MY KCG +  ++  FR +   ++V+WNAMI  +AR+G   +
Sbjct: 324 LVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDR 383

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411
            +  F ++++ R ++PD +TFL++L+AC H     + ++ +F SM   Y I    EH   
Sbjct: 384 ALASFGEMRSNR-VEPDGITFLSLLSACGHAGKVHESLN-WFNSMIXSYKIVXRPEHFAC 441

Query: 412 MIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471
           ++ ++ + G+V +A ++I+E+ F +   +W ALL+A     ++ +  ++A ++++LE  +
Sbjct: 442 LVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQN 501

Query: 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
              YV+L N+Y + G W   + +R  MRE+G++K+   SW+E++N
Sbjct: 502 SGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDN 546



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 97/190 (51%), Gaps = 2/190 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L A S L      ++ H  +LKSG+ S + +  AL+  Y K  S+ D+   
Sbjct: 297 PDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELA 356

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F +I  P VVSWN++I+ + + G Y +AL  F E+  + +  D  +F S L+ACG  G +
Sbjct: 357 FRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKV 416

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
              +   +S I  Y +        CL+D+  + G VE A  +  EM  + D   W +++A
Sbjct: 417 HESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLA 476

Query: 179 ASARNGNLEL 188
           A   + N++L
Sbjct: 477 ACHVHLNVKL 486


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 140/508 (27%), Positives = 266/508 (52%), Gaps = 12/508 (2%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKIN-----SLADAHKMFVEIPQPSVVSWNSL 75
           + +Q H  IL++G L + +++ +L+  Y  ++     S   + ++F  + +P+V  WN +
Sbjct: 50  HLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCM 109

Query: 76  ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135
           I   +++ +  KA+ L+ E+  +    + Y++ + L AC   G +  G+ +H+ +VK+ L
Sbjct: 110 IKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGL 169

Query: 136 ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-DIISWNSVIAASARNGNLELAFGFLH 194
                I +  I MY   G + +A  +  +   + D + WN++I    R G +E A     
Sbjct: 170 GGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFE 229

Query: 195 RLPNPDTIS-YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
            +P+   IS +N +I+G ++ G +E A      M   +  SW++++ GY+      EAL 
Sbjct: 230 GMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALE 289

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
           +F +MQ + +   ++   ++LS  A L AL  G  IH+   +  +    V+ ++L+DMY+
Sbjct: 290 IFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYA 349

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           KCG++++A  +F  +  K + +WNAMI G A +G     I+LF ++    D+ P+ +TF+
Sbjct: 350 KCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM----DIYPNEITFV 405

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
            VL AC+H  +   K    F SM K+YG++P +EH   ++ L+G+ G +  A++++  + 
Sbjct: 406 GVLNACAHGGL-VQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIP 464

Query: 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
                 VW ALL A     ++++       +++LE  +   Y +L N+Y   G W+    
Sbjct: 465 TEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGE 524

Query: 494 MRNFMRERGLRKEAGCSWIEVENVAAHS 521
           +R  M+ERG++   G S I++     H 
Sbjct: 525 VRKLMKERGIKTTPGTSIIDLGRGEVHK 552



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 133/292 (45%), Gaps = 65/292 (22%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFY---------RKI 51
           PN+Y    +L+A SD G      Q+H +++K G   +  + ++ +  Y         R+I
Sbjct: 136 PNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRI 195

Query: 52  -------------NSLAD----------AHKMFVEIPQPSVVS----------------- 71
                        N++ D          A ++F  +P  S++S                 
Sbjct: 196 LDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEV 255

Query: 72  ---------------WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116
                          W+++I GY+Q G + +AL +F ++++ +I    +   S L+AC  
Sbjct: 256 AREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACAN 315

Query: 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSV 176
           LG+L  G  IH+   + S++   V+   L+DMY KCG ++ A  VF +M +K++ SWN++
Sbjct: 316 LGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAM 375

Query: 177 IAASARNGNLELAFGFLHRLP-NPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           I   A +G  E A     ++   P+ I++  V+N  A  G ++  + I +SM
Sbjct: 376 IGGLAMHGRAEDAIDLFSKMDIYPNEITFVGVLNACAHGGLVQKGLTIFNSM 427



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 99/191 (51%), Gaps = 5/191 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P ++VL  +L A ++LG     + +H Y  ++    +  + T+L+  Y K   +  A ++
Sbjct: 301 PRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEV 360

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++    V SWN++I G    G+   A++LF ++   +IY +  +F   L AC   G +
Sbjct: 361 FEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITFVGVLNACAHGGLV 417

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNSVIA 178
           Q G+ I + + K Y +E  +    C++D+ G+ G + +A  V   +  +   + W +++ 
Sbjct: 418 QKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLG 477

Query: 179 ASARNGNLELA 189
           A  ++GN+EL 
Sbjct: 478 ACRKHGNVELG 488


>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1305

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 159/540 (29%), Positives = 270/540 (50%), Gaps = 49/540 (9%)

Query: 23   QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP----------------- 65
            +Q+H Y+L+ GF SNV +  +L+  Y +   L  + K+F  +                  
Sbjct: 646  RQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMVDRNLSSWNSIVSSYTRL 705

Query: 66   ------------------QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
                              +P +V+WNSL+SGY      R A+ +   ++ + +  +  S 
Sbjct: 706  GYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAVLKRIQIAGLKPNTSSI 765

Query: 108  TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
            +S L A  + G ++LG AIH  +++  L   V +   LIDMY K G +  A  VF  M +
Sbjct: 766  SSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDE 825

Query: 168  KDIISWNSVIAASARNGNLELAFGFLHRLPNP----DTISYNEVINGIAQFGDIEDAIMI 223
            K+I++WNS+I+  +  G L+ A   + R+       + +++N +++G A +G  E A+ +
Sbjct: 826  KNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTEKALAV 885

Query: 224  LSSMPS----PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
            +  M      PN  SW +IL+G          L +F +MQ + V  +  T S++L  +  
Sbjct: 886  VGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLRILGC 945

Query: 280  LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAM 339
            LS L  G  +HS  +K  L     VA+AL+DMY+K G ++ A  +F  +  K L +WN M
Sbjct: 946  LSLLYSGKEVHSFCLKNNLTRDAHVATALVDMYAKSGDLQSAAEIFWGIKNKPLASWNCM 1005

Query: 340  ITGYA--RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397
            I GYA  R G+  + I +F  +     ++PD++TF +VL+ C ++ +   +  +YF+ M 
Sbjct: 1006 IMGYAMFRRGE--EGIAVFNAMLEA-GIEPDAITFTSVLSVCKNSGL-VREGWKYFDLMR 1061

Query: 398  KDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVA 457
              YG+ PT+EHC  M+ L+G+ G +  A   IR +       +W A LS+     DL++A
Sbjct: 1062 SHYGVIPTIEHCSCMVELLGRSGYLDEAWDFIRTMPLKPDATIWGAFLSSCKIHRDLELA 1121

Query: 458  RISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
             I+   +  LE  +   Y+M+ NLY++   W     +RN M    +R +   SWI+++  
Sbjct: 1122 EIAWKRLQVLEPHNSANYMMMINLYSNLNRWGDVERIRNSMSNNRVRVQDLWSWIQIDQT 1181



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 210/429 (48%), Gaps = 20/429 (4%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGF-LSNVFVSTALMGFYRKINSLADAHKM 60
           +E VL  + R  + L +      +H  ++K G   S+  V +ALMGFY +  SL  A+K+
Sbjct: 523 DEVVLAMVFRICAVLMYRFLGFTIHGGLIKRGLDNSDTRVVSALMGFYGRCVSLDLANKI 582

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P+   ++WN ++   +QSG + KA+ LF  +  S   A   +    L  C      
Sbjct: 583 FDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQVCSNKEGF 642

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH  +++   E  V + N LI MY + G +E +  VF  M+D+++ SWNS++++ 
Sbjct: 643 AQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMVDRNLSSWNSIVSSY 702

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMP----SPNS 232
            R G ++ A G L  +      PD +++N +++G A      DAI +L  +      PN+
Sbjct: 703 TRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAVLKRIQIAGLKPNT 762

Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292
           SS +S+L        V     + G +    +  D Y  +T++        L +  ++   
Sbjct: 763 SSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDM 822

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL----CRKNLVTWNAMITGYARNGD 348
           + ++    +IV  ++L+   S  G ++ A+++   +     + N VTWN++++GYA  G 
Sbjct: 823 MDEK----NIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGK 878

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408
             K + +  ++K    ++P+ V++  +L+ CS     F    + F  M ++ G+ P    
Sbjct: 879 TEKALAVVGKMKK-NGVEPNVVSWTAILSGCSKNG-NFGNGLKIFLKMQEE-GVSPNSAT 935

Query: 409 CCSMIRLMG 417
             S++R++G
Sbjct: 936 ISSLLRILG 944



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 168/365 (46%), Gaps = 22/365 (6%)

Query: 1    PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
            PN   +  LL+A  + G     + +H Y++++    +V+V T L+  Y K   L  A  +
Sbjct: 760  PNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVETTLIDMYIKTGYLPYARMV 819

Query: 61   FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
            F  + + ++V+WNSLISG   +G  ++A  L   +E+  I ++A ++ S ++     G  
Sbjct: 820  FDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKT 879

Query: 121  QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            +  +A+  K+ K  +E  VV    ++    K G+  + + +F +M ++ +   ++ I++ 
Sbjct: 880  EKALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSL 939

Query: 181  AR---------NGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
             R         +G    +F   + L   D      +++  A+ GD++ A  I   + +  
Sbjct: 940  LRILGCLSLLYSGKEVHSFCLKNNLTR-DAHVATALVDMYAKSGDLQSAAEIFWGIKNKP 998

Query: 232  SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS--GIAGLSALTWG--- 286
             +SWN ++ GY    R  E + +F  M    +  D  TF+++LS    +GL    W    
Sbjct: 999  LASWNCMIMGYAMFRRGEEGIAVFNAMLEAGIEPDAITFTSVLSVCKNSGLVREGWKYFD 1058

Query: 287  -MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT-WNAMITGYA 344
             M  H  VI      +I   S ++++  + G ++ A    R++  K   T W A ++   
Sbjct: 1059 LMRSHYGVI-----PTIEHCSCMVELLGRSGYLDEAWDFIRTMPLKPDATIWGAFLSSCK 1113

Query: 345  RNGDL 349
             + DL
Sbjct: 1114 IHRDL 1118



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 91/181 (50%), Gaps = 4/181 (2%)

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS-IVVASAL 308
           + L  F  +Q+K V  DE   + +    A L     G  IH  +IK+GLD S   V SAL
Sbjct: 507 KVLEEFVRLQNKGVNFDEVVLAMVFRICAVLMYRFLGFTIHGGLIKRGLDNSDTRVVSAL 566

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           +  Y +C  +++A+ +F  + +++ + WN ++    ++G+  K ++LF  ++       D
Sbjct: 567 MGFYGRCVSLDLANKIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYD 626

Query: 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM 428
           S T + +L  CS+ +  F +  +    + +  G +  V  C S+I +  + G++  ++++
Sbjct: 627 S-TMVKLLQVCSNKE-GFAQGRQIHGYVLR-LGFESNVSMCNSLIVMYSRNGKLESSRKV 683

Query: 429 I 429
            
Sbjct: 684 F 684


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 162/569 (28%), Positives = 290/569 (50%), Gaps = 54/569 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAH 58
           P+     ++  A S LG       +H  ++K G  ++++++V ++ +  Y ++  L  A 
Sbjct: 184 PSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAK 243

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA-DAYSFTSALAACGQL 117
           K+F    + +   WN++IS +VQ+    + + LF +   SE  A D  +  SA++A   L
Sbjct: 244 KVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHL 303

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
              +L   +H+ ++K      V + N LI MY +C S++ +  +F  M +KD++SWN++I
Sbjct: 304 QKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMI 363

Query: 178 AASARNGNLELAFGFLHR----------------------LPNPD----TISY------- 204
           +A  +NG  + A    +                       L NPD    T  Y       
Sbjct: 364 SAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQ 423

Query: 205 -----NEVINGIAQFGDIEDAIMILSSMPSP--NSSSWNSILTGYVNRNRVPEALHLFGE 257
                + +I+  A+ G IE A  +     S   + ++WNS+++GY     V +A  +  +
Sbjct: 424 FEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQ 483

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M  + V  +  T +++L        + WG  +H   I+  LD ++ VA+AL+DMYSK G 
Sbjct: 484 MLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGS 543

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +  A+++F     K++VT++ MI GY ++G     + +F +++    +QPD+VT + VL+
Sbjct: 544 IAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQK-SGIQPDAVTLVAVLS 602

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           ACS+  +  D+  + FESM   Y I+P+ EH C +  ++G+ G V +A   +  +G G  
Sbjct: 603 ACSYAGL-VDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFV--IGLGEK 659

Query: 438 GVV---WRALLSASGACSDLDVARISAAEVIKLE---GDSDYVYVMLCNLYTSHGNWDVA 491
           G V   W +LL+A       ++ ++ A +++++E   G + Y +V+L N+Y    NW+  
Sbjct: 660 GNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGY-HVLLSNIYAEERNWENV 718

Query: 492 SVMRNFMRERGLRKEAGCSWIEVENVAAH 520
            ++R  MRERGL+KE G SWIE+     H
Sbjct: 719 DIVRKQMRERGLKKETGSSWIEIAGYMNH 747



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 183/386 (47%), Gaps = 58/386 (15%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS--EIYADAYSFTSALAAC 114
           A ++F  +P+PS V WN++I G V +    +AL  +  ++ S  ++  D+Y+++S L AC
Sbjct: 23  ARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKAC 82

Query: 115 GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE------------DAI-GV 161
               +L +G A+H+  ++  +    ++ N L++MY  C S              D +  V
Sbjct: 83  ADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKV 142

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELA---FGFLHRLP-NPDTISYNEVINGIAQFGDI 217
           F  M  + +++WN++IA   R      A   F  + ++   P  +S+  V    +  GD 
Sbjct: 143 FDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDF 202

Query: 218 EDA-----------------IMILSSMP--------------------SPNSSSWNSILT 240
           ++A                 + ++SS                        N+  WN++++
Sbjct: 203 KNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMIS 262

Query: 241 GYVNRNRVPEALHLFGE-MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            +V  N   E + LF + ++S+D  +DE T  + +S  + L        +H+ VIK    
Sbjct: 263 AFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAV 322

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
             + V +AL+ MYS+C  ++ +  +F ++  K++V+WN MI+ + +NG   + + LF ++
Sbjct: 323 TQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEM 382

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIP 385
           K  +DL  DSVT   +L+A S    P
Sbjct: 383 KK-QDLMVDSVTVTALLSAASDLRNP 407



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 196/436 (44%), Gaps = 59/436 (13%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM- 60
           + Y    +L+A +D       + +H + L+     +  V  +L+  Y   +S     KM 
Sbjct: 71  DSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMV 130

Query: 61  ------------FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFT 108
                       F  + + +VV+WN+LI+ YV++ +Y +A+  F  + +  I     SF 
Sbjct: 131 SGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFV 190

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLE--RGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
           +   A   LG  +    +H  +VK   E    + + +  I MY + G +E A  VF   +
Sbjct: 191 NVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCL 250

Query: 167 DKDIISWNSVIAASARNG-NLELAFGFLHRLPNPD----------TIS------------ 203
           +++   WN++I+A  +N  +LE    F   + + D           IS            
Sbjct: 251 ERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAE 310

Query: 204 -----------------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246
                             N +I   ++   I+ +  I  +MP  +  SWN++++ +V   
Sbjct: 311 QLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNG 370

Query: 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
              EAL LF EM+ +D+ +D  T + +LS  + L     G   H  +++ G+     + S
Sbjct: 371 LNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFE-GMDS 429

Query: 307 ALLDMYSKCGQVEIADSMF-RSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
            L+DMY+K G +E A ++F +S    ++  TWN+M++GY +NG + +   +  Q+   + 
Sbjct: 430 YLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLD-QK 488

Query: 365 LQPDSVTFLNVLAACS 380
           + P+ VT  ++L AC+
Sbjct: 489 VMPNVVTLASILPACN 504



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 92/185 (49%), Gaps = 16/185 (8%)

Query: 211 IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK--DVPMDEY 268
           + Q G +  A  +  ++P P++  WN+I+ G V  N   EAL  +  M+S    V  D Y
Sbjct: 14  LCQEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSY 73

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC------------- 315
           T+S++L   A    L  G  +H+  ++  ++ S +V ++LL+MYS C             
Sbjct: 74  TYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGY 133

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
            + ++   +F ++ ++ +V WN +I  Y R     + ++ F  +  +  ++P  V+F+NV
Sbjct: 134 SRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKI-GIKPSPVSFVNV 192

Query: 376 LAACS 380
             A S
Sbjct: 193 FPAFS 197


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 145/491 (29%), Positives = 251/491 (51%), Gaps = 43/491 (8%)

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           +V  P P V  +    + +       +A+     +ER  ++ADA +++  +  C   G++
Sbjct: 16  YVADPSPLVNEF----ANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAV 71

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           Q G  +H  I     E  + + N L++MY K   +E+A  +F EM +++++SW ++I+A 
Sbjct: 72  QEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAY 131

Query: 181 ARNGN---LELAFGFLHRLPNPDTISYNEVIN-------------GIAQFG--------- 215
           +   N   L+           P+  +Y+ V+              GI + G         
Sbjct: 132 SNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLESDVFVRS 191

Query: 216 ----------DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
                     D+++A+ +   MP+ +   WNSI+ G+   +   EAL+LF  M+      
Sbjct: 192 ALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLA 251

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           D+ T +++L    GL+ L  G  +H  V+K   D  +++ +AL+DMY KCG +E A+S F
Sbjct: 252 DQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAF 309

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
             +  K++++W+ M+ G A+NG   + +ELFE +K     +P+ +T L VL ACSH  + 
Sbjct: 310 SRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGS-RPNYITVLGVLFACSHAGL- 367

Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
            +K   YF SM K +G+ P  EH   +I L+G+ G +  A ++I E+      V WR LL
Sbjct: 368 VEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLL 427

Query: 446 SASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505
            A     ++D+A  +A ++I+LE +    Y++L N+Y +   W+  + +R  M  RG+RK
Sbjct: 428 GACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRK 487

Query: 506 EAGCSWIEVEN 516
             GCSWIEV+ 
Sbjct: 488 TPGCSWIEVDK 498



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 164/320 (51%), Gaps = 32/320 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN +    +LRA   L      +QLHC I+K+G  S+VFV +AL+  Y K + L +A  +
Sbjct: 153 PNMFTYSSVLRACDGL---PNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGV 209

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+P   +V WNS+I G+ Q+    +ALNLF  ++R+   AD  + TS L AC  L  L
Sbjct: 210 FDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALL 269

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           +LG  +H  ++K+  ++ +++ N LIDMY KCGS+EDA   F  M++KD+ISW++++A  
Sbjct: 270 ELGRQVHVHVLKF--DQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGL 327

Query: 181 ARNG----NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
           A+NG     LEL          P+ I+   V+   +  G +E       SM       P 
Sbjct: 328 AQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPG 387

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
              +  ++       R+ EA+ L  EM+ +                    ++TW  L+ +
Sbjct: 388 REHYGCLIDLLGRAGRLDEAVKLIHEMECEP------------------DSVTWRTLLGA 429

Query: 292 CVIKQGLDASIVVASALLDM 311
           C + + +D +I  A  ++++
Sbjct: 430 CRVHRNVDLAIYAAKKIIEL 449



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 193/440 (43%), Gaps = 55/440 (12%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           L++  S  G     +++H +I   G+   +FV   L+  Y K N L +A  +F E+P+ +
Sbjct: 61  LIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERN 120

Query: 69  VVSWNSLISGYVQSGKYR-KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127
           VVSW ++IS Y  S K   KAL   + + R  +  + ++++S L AC  L +L+    +H
Sbjct: 121 VVSWTTMISAY--SNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLR---QLH 175

Query: 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLE 187
             I+K  LE  V + + LID+Y K   +++A+GVF EM  +D++ WNS+I   A+N +  
Sbjct: 176 CGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGN 235

Query: 188 LAFGFLHRLP-------------------------------------NPDTISYNEVING 210
            A     R+                                      + D I  N +I+ 
Sbjct: 236 EALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQDLILNNALIDM 295

Query: 211 IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
             + G +EDA    S M   +  SW++++ G        +AL LF  M+      +  T 
Sbjct: 296 YCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITV 355

Query: 271 STMLSGI--AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
             +L     AGL    W     S     G+D        L+D+  + G+++ A  +   +
Sbjct: 356 LGVLFACSHAGLVEKGW-YYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEM 414

Query: 329 -CRKNLVTWNAMITG--YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
            C  + VTW  ++      RN DL          K + +L+P+      +L+        
Sbjct: 415 ECEPDSVTWRTLLGACRVHRNVDLA-----IYAAKKIIELEPEDAGTYILLSNIYANTQR 469

Query: 386 FDKVSEYFESMTKDYGIKPT 405
           ++ V+E  ++MT + GI+ T
Sbjct: 470 WEDVAEVRKTMT-NRGIRKT 488


>gi|225432410|ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Vitis vinifera]
          Length = 623

 Score =  244 bits (624), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 155/554 (27%), Positives = 258/554 (46%), Gaps = 76/554 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +     L A + LG      ++H  ++ SG  S++ V  +L+  Y K  S   A ++
Sbjct: 69  PDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRV 128

Query: 61  FVEI-------------------------------PQPSVVSWNSLISGYVQSGKYRKAL 89
           F E+                               P+   ++WN +ISGY Q G     L
Sbjct: 129 FEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCL 188

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
            LF ++    +  D ++F++ + A  +L     G  +H  I+K    + V ++N ++  Y
Sbjct: 189 GLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWVKAVEVSNSILSFY 248

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVIN 209
            K G  +D + VF  +     +SWN++I A  +                           
Sbjct: 249 SKLGCKDDVMKVFESIGILTQVSWNAMIDAHMK--------------------------- 281

Query: 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
                GD  +A ++    P  N  SW S++TGY       +AL  F +M    +  D++T
Sbjct: 282 ----IGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFT 337

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           F  +L   + L+ L  G +IH  +I  G  A + V + L++MY+KCG ++ +++ F+ + 
Sbjct: 338 FGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEIL 397

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389
            K+LV+WNAM+ G   +G  T+ +EL+E++     ++PD VTF+ +L  CSH+ +  +K 
Sbjct: 398 GKDLVSWNAMLFGLGMHGHATQALELYEEM-VASGMKPDKVTFIGLLMTCSHSGL-IEKG 455

Query: 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSAS- 448
              FESM   YG+    EH   M+ L+G+ G + +A+ ++ E     Y    RA  S   
Sbjct: 456 QALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQARELVDE-----YSRTGRAETSLPE 510

Query: 449 ---GACSDLDVARISA--AEVIKL-EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502
              GAC      R+ A   E +K+ E   +  YV+L NLY   G W  A ++R  M + G
Sbjct: 511 ALLGACFAHSEVRMGANLGEYLKVFEPQKEMSYVLLSNLYCVSGQWKEAEMVRKTMTDHG 570

Query: 503 LRKEAGCSWIEVEN 516
           ++K  GCSWIEV N
Sbjct: 571 VKKMPGCSWIEVRN 584



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 210/445 (47%), Gaps = 66/445 (14%)

Query: 36  SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL 95
           S++F +T+ +    K+  +  A ++F E+P    V+WN++++ Y Q G +++AL LF  +
Sbjct: 3   SHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHM 62

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
             +    D ++FT+ L+AC  LG L+ GM IH+++V    +  + + N LIDMYGKC S 
Sbjct: 63  RIANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSA 122

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFG 215
             A  VF EM   + +SW S++ A   +G  ++A      +P    I++N +I+G  Q G
Sbjct: 123 TSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCG 182

Query: 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275
           D+E                                 L LF +M+   +  D++TFS +++
Sbjct: 183 DVE-------------------------------LCLGLFKKMREDSLQPDQWTFSALVN 211

Query: 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG------------------- 316
            +  L   ++G ++H  +IK G   ++ V++++L  YSK G                   
Sbjct: 212 ALCELQEPSYGYMMHGFIIKSGWVKAVEVSNSILSFYSKLGCKDDVMKVFESIGILTQVS 271

Query: 317 -------QVEIADS-----MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
                   ++I D+     +F+    KN+V+W +MITGYARNG   + +  F ++     
Sbjct: 272 WNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMME-NH 330

Query: 365 LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424
           +QPD  TF  VL ACS   +      +        YG    V+    ++ +  + G++  
Sbjct: 331 IQPDDFTFGAVLHACS--SLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQG 388

Query: 425 AQRMIRELGFGSYGVVWRALLSASG 449
           +    +E+  G   V W A+L   G
Sbjct: 389 SNTAFKEI-LGKDLVSWNAMLFGLG 412


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  244 bits (624), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 150/495 (30%), Positives = 254/495 (51%), Gaps = 35/495 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE-IPQPSVVSWNSLISGYVQ 81
           +Q+H  +LKSG L + +  T  + F    +  + AH +F     +P    WN +I G   
Sbjct: 28  KQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPDTFLWNLMIRGLSC 87

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           S +  ++L L+  +       +AY+F   L AC  L + Q    IH+ I K+        
Sbjct: 88  SDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFG------- 140

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
                  YG                  DI + NS+I + A  GN + A     R+  PD 
Sbjct: 141 -------YGH-----------------DIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDA 176

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSS-SWNSILTGYVNRNRVPEALHLFGEMQS 260
           +S+N VI G  + G+++ A+ +   MP  N++ SW ++++GYV      EAL LF EMQ+
Sbjct: 177 VSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQN 236

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            +VP D  + ++ LS  + L AL  G  IHS   K       V+   L+DMY+KCG++E 
Sbjct: 237 SNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEE 296

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F+++  K++  W A+I+GYA +G   + I  F +++ +  ++P+++TF  VL ACS
Sbjct: 297 ALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNM-GVKPNAITFTAVLTACS 355

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
           +T +  ++    F ++ +DY +KPT+EH   M+ L+G+ G +  A R I+++      V+
Sbjct: 356 YTGL-VEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVI 414

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           W +LL A     ++++       +I+++ +    YV + N++     WD A+  R  MRE
Sbjct: 415 WGSLLKACQIHKNIELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMRE 474

Query: 501 RGLRKEAGCSWIEVE 515
           +G+ K  GCS I +E
Sbjct: 475 QGVVKVPGCSAISLE 489



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 154/356 (43%), Gaps = 59/356 (16%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N Y    LL+A S+L       Q+H +I K G+  +++   +L+  Y    +   AH +F
Sbjct: 109 NAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLF 168

Query: 62  VEIPQPSVVSWNS--------------------------------LISGYVQSGKYRKAL 89
             I +P  VSWNS                                +ISGYVQ+G  ++AL
Sbjct: 169 DRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEAL 228

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
            LF E++ S +  D  S  SAL+AC QLG+L+ G  IHS   K       V+   LIDMY
Sbjct: 229 QLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMY 288

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYN 205
            KCG +E+A+GVF  M  K +  W ++I+  A +G    A      + N    P+ I++ 
Sbjct: 289 AKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFT 348

Query: 206 EVINGIAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            V+   +  G +E+   + +++       P    +  ++        + EA     +M  
Sbjct: 349 AVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPL 408

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316
           K                   +A+ WG L+ +C I + ++    +   L++M S  G
Sbjct: 409 KP------------------NAVIWGSLLKACQIHKNIELGEKIGEILIEMDSNHG 446



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 96/191 (50%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L   L A S LG     + +H Y  K+    +  +   L+  Y K   + +A  +
Sbjct: 241 PDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGV 300

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   SV  W +LISGY   G  R+A++ F+E++   +  +A +FT+ L AC   G +
Sbjct: 301 FKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLV 360

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G ++ + I + Y+L+  +    C++D+ G+ G + +A     +M +  + + W S++ 
Sbjct: 361 EEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLK 420

Query: 179 ASARNGNLELA 189
           A   + N+EL 
Sbjct: 421 ACQIHKNIELG 431


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  244 bits (624), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 154/556 (27%), Positives = 271/556 (48%), Gaps = 75/556 (13%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGF--YRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q+H  I+K+G  +  F  + L+ F       +L+ A  +F  I QP+   WN++I G  
Sbjct: 49  KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNS 108

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
            S     A++ +V +    +  ++Y+F   L +C ++G+ Q G  IH  ++K  LE    
Sbjct: 109 LSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPF 168

Query: 141 IANCLIDMYGKCGSV-------------------------------EDAIGVFGEMIDKD 169
           +   LI+MY + G +                               +DA  +F E+  +D
Sbjct: 169 VHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRD 228

Query: 170 IISWNSVIAASARNGNLELAFGFLHRL------PNPDTIS-------------------- 203
            +SWN++IA  A++G  E A  F   +      PN  T+                     
Sbjct: 229 AVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRS 288

Query: 204 -------------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPE 250
                         N +I+  ++ GD++ A  +   +   +  SWN ++ GY + N   E
Sbjct: 289 WIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKE 348

Query: 251 ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD-ASIVVASALL 309
           AL LF +MQ  +V  ++ TF ++L   A L AL  G  IH+ + K+ L   +  + ++L+
Sbjct: 349 ALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLI 408

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
           DMY+KCG +E A  +F  +  K+L +WNAMI+G A +G     +ELF Q++     +PD 
Sbjct: 409 DMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRD-EGFEPDD 467

Query: 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429
           +TF+ VL+ACSH  +  +   + F SM +DY I P ++H   MI L+G+ G    A+ ++
Sbjct: 468 ITFVGVLSACSHAGL-VELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALM 526

Query: 430 RELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD 489
           + +     G +W +LL A     ++++   +A  + +LE ++   YV+L N+Y + G WD
Sbjct: 527 KNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWD 586

Query: 490 VASVMRNFMRERGLRK 505
             + +R  + ++G++K
Sbjct: 587 DVARIRTKLNDKGMKK 602



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 118/232 (50%), Gaps = 5/232 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE  +  +L A +  G       +  +I   G  SN+ +  AL+  Y K   L  A  +
Sbjct: 262 PNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDL 321

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  I +  ++SWN +I GY     Y++AL LF ++++S +  +  +F S L AC  LG+L
Sbjct: 322 FEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGAL 381

Query: 121 QLGMAIHSKIVKYSLE-RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
            LG  IH+ I K  L      +   LIDMY KCG++E A  VF  M  K + SWN++I+ 
Sbjct: 382 DLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISG 441

Query: 180 SARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSM 227
            A +G+  +A     ++ +    PD I++  V++  +  G +E      SSM
Sbjct: 442 LAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSM 493


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  244 bits (623), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 162/569 (28%), Positives = 290/569 (50%), Gaps = 54/569 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAH 58
           P+     ++  A S LG       +H  ++K G  ++++++V ++ +  Y ++  L  A 
Sbjct: 208 PSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAK 267

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA-DAYSFTSALAACGQL 117
           K+F    + +   WN++IS +VQ+    + + LF +   SE  A D  +  SA++A   L
Sbjct: 268 KVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHL 327

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
              +L   +H+ ++K      V + N LI MY +C S++ +  +F  M +KD++SWN++I
Sbjct: 328 QKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMI 387

Query: 178 AASARNGNLELAFGFLHR----------------------LPNPD----TISY------- 204
           +A  +NG  + A    +                       L NPD    T  Y       
Sbjct: 388 SAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQ 447

Query: 205 -----NEVINGIAQFGDIEDAIMILSSMPSP--NSSSWNSILTGYVNRNRVPEALHLFGE 257
                + +I+  A+ G IE A  +     S   + ++WNS+++GY     V +A  +  +
Sbjct: 448 FEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQ 507

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M  + V  +  T +++L        + WG  +H   I+  LD ++ VA+AL+DMYSK G 
Sbjct: 508 MLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGS 567

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +  A+++F     K++VT++ MI GY ++G     + +F +++    +QPD+VT + VL+
Sbjct: 568 IAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQK-SGIQPDAVTLVAVLS 626

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           ACS+  +  D+  + FESM   Y I+P+ EH C +  ++G+ G V +A   +  +G G  
Sbjct: 627 ACSYAGL-VDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFV--IGLGEK 683

Query: 438 GVV---WRALLSASGACSDLDVARISAAEVIKLE---GDSDYVYVMLCNLYTSHGNWDVA 491
           G V   W +LL+A       ++ ++ A +++++E   G + Y +V+L N+Y    NW+  
Sbjct: 684 GNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGY-HVLLSNIYAEERNWENV 742

Query: 492 SVMRNFMRERGLRKEAGCSWIEVENVAAH 520
            ++R  MRERGL+KE G SWIE+     H
Sbjct: 743 DIVRKQMRERGLKKETGSSWIEIAGYMNH 771



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 183/386 (47%), Gaps = 58/386 (15%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS--EIYADAYSFTSALAAC 114
           A ++F  +P+PS V WN++I G V +    +AL  +  ++ S  ++  D+Y+++S L AC
Sbjct: 47  ARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKAC 106

Query: 115 GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE------------DAI-GV 161
               +L +G A+H+  ++  +    ++ N L++MY  C S              D +  V
Sbjct: 107 ADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKV 166

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELA---FGFLHRLP-NPDTISYNEVINGIAQFGDI 217
           F  M  + +++WN++IA   R      A   F  + ++   P  +S+  V    +  GD 
Sbjct: 167 FDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDF 226

Query: 218 EDA-----------------IMILSSMP--------------------SPNSSSWNSILT 240
           ++A                 + ++SS                        N+  WN++++
Sbjct: 227 KNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMIS 286

Query: 241 GYVNRNRVPEALHLFGE-MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            +V  N   E + LF + ++S+D  +DE T  + +S  + L        +H+ VIK    
Sbjct: 287 AFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAV 346

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
             + V +AL+ MYS+C  ++ +  +F ++  K++V+WN MI+ + +NG   + + LF ++
Sbjct: 347 TQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEM 406

Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIP 385
           K  +DL  DSVT   +L+A S    P
Sbjct: 407 KK-QDLMVDSVTVTALLSAASDLRNP 431



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 196/436 (44%), Gaps = 59/436 (13%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM- 60
           + Y    +L+A +D       + +H + L+     +  V  +L+  Y   +S     KM 
Sbjct: 95  DSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMV 154

Query: 61  ------------FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFT 108
                       F  + + +VV+WN+LI+ YV++ +Y +A+  F  + +  I     SF 
Sbjct: 155 SGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFV 214

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLE--RGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
           +   A   LG  +    +H  +VK   E    + + +  I MY + G +E A  VF   +
Sbjct: 215 NVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCL 274

Query: 167 DKDIISWNSVIAASARNG-NLELAFGFLHRLPNPD----------TIS------------ 203
           +++   WN++I+A  +N  +LE    F   + + D           IS            
Sbjct: 275 ERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAE 334

Query: 204 -----------------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246
                             N +I   ++   I+ +  I  +MP  +  SWN++++ +V   
Sbjct: 335 QLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNG 394

Query: 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
              EAL LF EM+ +D+ +D  T + +LS  + L     G   H  +++ G+     + S
Sbjct: 395 LNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFE-GMDS 453

Query: 307 ALLDMYSKCGQVEIADSMF-RSLCR-KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD 364
            L+DMY+K G +E A ++F +S    ++  TWN+M++GY +NG + +   +  Q+   + 
Sbjct: 454 YLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLD-QK 512

Query: 365 LQPDSVTFLNVLAACS 380
           + P+ VT  ++L AC+
Sbjct: 513 VMPNVVTLASILPACN 528



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 98/199 (49%), Gaps = 18/199 (9%)

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
           P   TI Y   ++ + Q G +  A  +  ++P P++  WN+I+ G V  N   EAL  + 
Sbjct: 26  PKIPTIRYR--LSRLCQEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYS 83

Query: 257 EMQ--SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
            M+  S  V  D YT+S++L   A    L  G  +H+  ++  ++ S +V ++LL+MYS 
Sbjct: 84  NMKSSSPQVKCDSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSM 143

Query: 315 C-------------GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361
           C              + ++   +F ++ ++ +V WN +I  Y R     + ++ F  +  
Sbjct: 144 CSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMK 203

Query: 362 VRDLQPDSVTFLNVLAACS 380
           +  ++P  V+F+NV  A S
Sbjct: 204 I-GIKPSPVSFVNVFPAFS 221


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  244 bits (623), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 143/444 (32%), Positives = 234/444 (52%), Gaps = 35/444 (7%)

Query: 103 DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162
           D+++++  + A    G   +  A+HS +VK        + N LID Y K G   DA  VF
Sbjct: 5   DSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVF 63

Query: 163 GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIM 222
            EM ++D++SWN+ +AA  R G L         +P  DT+S+N +++G  + G++E A  
Sbjct: 64  DEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFE 123

Query: 223 ILSSMPSPNSSSWNSILTGYVNR----------NRVP---------------------EA 251
           +   MP  N  SW+++++GY  +          +++P                     EA
Sbjct: 124 LFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEA 183

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
             LF +M+   V +D     ++L+  A   +L+ G  IH  V K+ L  S  V +AL+DM
Sbjct: 184 GKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDM 243

Query: 312 YSKCGQVEIADSMFRS-LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370
           + KCG V  AD +F +   +K+ V+WN++I G+A +G   K +ELF Q+K  +   PD+V
Sbjct: 244 FCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQ-QGFNPDAV 302

Query: 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
           T +NVL+AC+H     D+   +F +M +DYGI P +EH   MI L+G+ G +  A  +I+
Sbjct: 303 TMINVLSACTHMGF-VDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIK 361

Query: 431 ELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490
            + +    V+W +LLSA     +++ A I+  E+ KL+  +   Y +L N+Y   G W  
Sbjct: 362 SMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSD 421

Query: 491 ASVMRNFMRERGLRKEAGCSWIEV 514
            +  R  M+  G +K AG SW+E+
Sbjct: 422 MAKARMQMKGTGSQKTAGSSWVEL 445



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 5/196 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV   + ++  Y K   L  A  +F ++P  ++V+W  ++S   Q G   +A  LF +++
Sbjct: 132 NVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMK 191

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
            + +  D  +  S LAAC + GSL LG  IH  + K +L R   + N LIDM+ KCG V 
Sbjct: 192 EASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVN 251

Query: 157 DAIGVFG-EMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGI 211
            A  VF  E + KD +SWNS+I   A +G+ + A     ++     NPD ++   V++  
Sbjct: 252 RADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSAC 311

Query: 212 AQFGDIEDAIMILSSM 227
              G +++     S+M
Sbjct: 312 THMGFVDEGRRHFSNM 327


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  244 bits (623), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 147/500 (29%), Positives = 258/500 (51%), Gaps = 22/500 (4%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLAD-AHKMFVEIPQPSVVSWNSLISGYVQ 81
           +QLH   +K+G + +   +  ++ F    +   D A  +F ++P+P+   WN+++    +
Sbjct: 36  KQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAE 95

Query: 82  SGKYR---KALNLF-VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER 137
           +       +AL LF   L    +  + ++F S L AC +   L+ G  IH  IVK+    
Sbjct: 96  TNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHE 155

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
              + + L+ MY  C  +EDA  +F     K+++ ++         G+ ++      R  
Sbjct: 156 DEFVISNLVRMYVMCAVMEDAYSLFC----KNVVDFD---------GSCQMELD--KRKQ 200

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
           + + + +N +I+G  + GDI+ A  +   MP  +  SWN +++GY       EA++LF E
Sbjct: 201 DGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQE 260

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           MQS ++  +  T  ++L  IA + AL  G  IH    K  ++   V+ SAL+DMYSKCG 
Sbjct: 261 MQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGS 320

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           ++ A  +F +L ++N +TW+A+I  +A +G     I  F  L     + P+ V ++ +L+
Sbjct: 321 IDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHF-HLMGKAGVTPNDVAYIGILS 379

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           ACSH  +  ++   +F  M K  G++P +EH   M+ L+G+ G +  A+ +IR +     
Sbjct: 380 ACSHAGL-VEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPD 438

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497
            V+W+ALL A     +L +    A  +++L       YV L NLY S GNW+  + +R  
Sbjct: 439 DVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLK 498

Query: 498 MRERGLRKEAGCSWIEVENV 517
           M+   +RK+ GCSWIE+  +
Sbjct: 499 MKGMDIRKDPGCSWIEIHGI 518



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 110/223 (49%), Gaps = 5/223 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  +L A + +G     + +H Y  K+    +  + +AL+  Y K  S+ +A ++
Sbjct: 268 PNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQV 327

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+ + ++W+++I  +   G+   A+  F  + ++ +  +  ++   L+AC   G +
Sbjct: 328 FETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLV 387

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G +  S +VK   L+  +    C++D+ G+ G +E+A  +   M I+ D + W +++ 
Sbjct: 388 EEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLG 447

Query: 179 ASARNGNLELAFGF---LHRLPNPDTISYNEVINGIAQFGDIE 218
           A   + NL++       L  L   D+ SY  + N  A  G+ E
Sbjct: 448 ACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWE 490


>gi|413932453|gb|AFW67004.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 913

 Score =  244 bits (623), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 145/530 (27%), Positives = 265/530 (50%), Gaps = 42/530 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +Q+H   +++GF ++ ++ + L+  Y +  SL  A ++F  +  P VV + SL+S   ++
Sbjct: 156 EQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRN 215

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+  +A+++  ++ R  +  + ++ TS LA C +     +G  IH  ++K    + V  +
Sbjct: 216 GELARAVDVLCQMTRQGLQPNEHTMTSMLAECPR----GIGEQIHGYMLKVMGSQSVYAS 271

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------ 196
             LID Y + G    A  VF  +  K+++SW S++    R+G L+ A      +      
Sbjct: 272 TALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGVQ 331

Query: 197 PNP------------------------------DTISYNEVINGIAQFGDIEDAIMILSS 226
           PN                               D    N +++   + G + +   +L  
Sbjct: 332 PNEFAFSIALSACGSVCLGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSELEAVLGK 391

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           + +P+  SW + ++         +A+ L  +M S+    ++Y FS+ LS  A L+ L  G
Sbjct: 392 IENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLHQG 451

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
             +H   +K G D  +   +AL++MYSKCG++  A   F  +   ++++WN++I G A++
Sbjct: 452 RQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGLAQH 511

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406
           GD    +E F ++ +  D +PD  TFL+VL  C+H  +   +   +F  MT  YG+ PT 
Sbjct: 512 GDANLALETFSEMCS-SDWRPDDSTFLSVLVGCNHAGL-VKEGETFFRQMTDRYGLTPTP 569

Query: 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466
            H   MI ++G+ G    A RMI  + F    ++W+ LL++     +LD+ +++A ++++
Sbjct: 570 SHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAADKLME 629

Query: 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           L       YV++ NLY  H  W  A  +R  M E G++K+AG SWIEV+N
Sbjct: 630 LSERDSASYVLMSNLYAMHEEWRDAERVRRRMDEIGVKKDAGWSWIEVKN 679



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 178/366 (48%), Gaps = 39/366 (10%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           K   L DA  +F  +P+ +VV+W + ISG  ++G+   A  +F ++  S +  + ++  +
Sbjct: 82  KSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFACNA 141

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
           ALAAC   G+L LG  +HS  V+        I +CLI++Y +CGS+  A  VF  M   D
Sbjct: 142 ALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPD 201

Query: 170 IISWNSVIAASARNGNLELAFGFLHRL------PNPDTIS---------YNEVING---- 210
           ++ + S+++A  RNG L  A   L ++      PN  T++           E I+G    
Sbjct: 202 VVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPRGIGEQIHGYMLK 261

Query: 211 ----------------IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
                            +++GD   A  +  ++ S N  SW S++   +   R+ +AL +
Sbjct: 262 VMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRV 321

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F EM S+ V  +E+ FS  LS      ++  G  IH   IK+ L   I V++ALL MY +
Sbjct: 322 FSEMISEGVQPNEFAFSIALSACG---SVCLGRQIHCSAIKRDLMTDIRVSNALLSMYGR 378

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
            G V   +++   +   +LV+W A I+   +NG   K + L  Q+ +     P+   F +
Sbjct: 379 SGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHS-EGFTPNDYAFSS 437

Query: 375 VLAACS 380
            L++C+
Sbjct: 438 GLSSCA 443



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 108/435 (24%), Positives = 187/435 (42%), Gaps = 91/435 (20%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+ +  +L A    G     +Q+H Y+LK     +V+ STAL+ FY +      A  +
Sbjct: 235 PNEHTMTSML-AECPRG---IGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTV 290

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   +VVSW S++   ++ G+   AL +F E+    +  + ++F+ AL+AC   GS+
Sbjct: 291 FENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSAC---GSV 347

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  IH   +K  L   + ++N L+ MYG+ G V +   V G++ + D++SW + I+A+
Sbjct: 348 CLGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISAN 407

Query: 181 ARNGNLELAFGFLHRL------PNPDTISY------------------------------ 204
            +NG  E A   L ++      PN    S                               
Sbjct: 408 FQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKV 467

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +IN  ++ G I  A +    M + +  SWNS++ G         AL  F EM S 
Sbjct: 468 CTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGLAQHGDANLALETFSEMCSS 527

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           D   D+ TF ++L G             H+ ++K+G                        
Sbjct: 528 DWRPDDSTFLSVLVGCN-----------HAGLVKEG------------------------ 552

Query: 322 DSMFRSLCRKNLVT-----WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
           ++ FR +  +  +T     +  MI    RNG   + + + E +      +PD + +  +L
Sbjct: 553 ETFFRQMTDRYGLTPTPSHYACMIDMLGRNGRFAEALRMIENMP----FEPDVLIWKTLL 608

Query: 377 AACS-HTDIPFDKVS 390
           A+C  H ++   K++
Sbjct: 609 ASCKLHRNLDIGKLA 623



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 144/323 (44%), Gaps = 30/323 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+     L A    G     +Q+HC  +K   ++++ VS AL+  Y +   +++   +
Sbjct: 332 PNEFAFSIALSA---CGSVCLGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSELEAV 388

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
             +I  P +VSW + IS   Q+G   KA+ L +++       + Y+F+S L++C  L  L
Sbjct: 389 LGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALL 448

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  +H   +K   +  V   N LI+MY KCG +  A   F  M   D++SWNS+I   
Sbjct: 449 HQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGL 508

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMP-----SPN 231
           A++G+  LA      + +    PD  ++  V+ G    G +++       M      +P 
Sbjct: 509 AQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTPT 568

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
            S +  ++       R  EAL +      +++P +                L W  L+ S
Sbjct: 569 PSHYACMIDMLGRNGRFAEALRMI-----ENMPFEP-------------DVLIWKTLLAS 610

Query: 292 CVIKQGLDASIVVASALLDMYSK 314
           C + + LD   + A  L+++  +
Sbjct: 611 CKLHRNLDIGKLAADKLMELSER 633



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 99/186 (53%), Gaps = 1/186 (0%)

Query: 194 HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
           H  P PD +   + ++G+ + G + DA+ +   MP  N  +W + ++G     R   A  
Sbjct: 63  HAAPPPDVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAAT 122

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
           +F +M    V  +++  +  L+  A   AL  G  +HS  ++ G  A   + S L+++YS
Sbjct: 123 MFADMLESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYS 182

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           +CG +  A+ +FR +   ++V + ++++   RNG+L + +++  Q+ T + LQP+  T  
Sbjct: 183 RCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQM-TRQGLQPNEHTMT 241

Query: 374 NVLAAC 379
           ++LA C
Sbjct: 242 SMLAEC 247



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 123/284 (43%), Gaps = 53/284 (18%)

Query: 140 VIANC-LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL-- 196
           V+ +C  +D   K G + DA+ +F  M  K++++W + I+   RNG  E A      +  
Sbjct: 70  VVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLE 129

Query: 197 ----PNP-------------DTISYNEVINGIA--------------------QFGDIED 219
               PN                +   E ++ +A                    + G +  
Sbjct: 130 SGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRA 189

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS---- 275
           A  +   M +P+   + S+++       +  A+ +  +M  + +  +E+T ++ML+    
Sbjct: 190 AEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPR 249

Query: 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335
           GI        G  IH  ++K     S+  ++AL+D YS+ G    A ++F +L  KN+V+
Sbjct: 250 GI--------GEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVS 301

Query: 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           W +M+    R+G L   + +F ++ +   +QP+   F   L+AC
Sbjct: 302 WCSMMQLCIRDGRLDDALRVFSEMIS-EGVQPNEFAFSIALSAC 344


>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 518

 Score =  244 bits (623), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 148/506 (29%), Positives = 255/506 (50%), Gaps = 41/506 (8%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGF--YRKINSLADAHKMFVEIPQPSVVSWNSLISG 78
           + +Q H  +  +G  +N F  + L+ F  +    SL  A ++F  I  P++   N++I  
Sbjct: 20  HLKQAHAQVFTTGLDTNTFALSRLLAFCSHPYQGSLTYACRVFERIHHPTLCICNTIIKT 79

Query: 79  YVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
           ++ +G +    ++F ++  + +  D Y+    L AC  L    LG  +H    K  L   
Sbjct: 80  FLVNGNFYGTFHVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLGKMVHGYSSKLGLVFD 139

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN 198
           + + N L+ MY  CG V  A  VF EM                               P 
Sbjct: 140 IFVGNSLMAMYSVCGDVIAARHVFDEM-------------------------------PR 168

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
              +S++ +I+G A+ GD++ A +     P  +   W ++++GYV  +   E L+LF  +
Sbjct: 169 LSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLFRLL 228

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318
           Q   V  DE  F ++LS  A L AL  G+ IH  + ++ +  SI ++++LLDMY+KCG +
Sbjct: 229 QLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTVSLSIRLSTSLLDMYAKCGNL 288

Query: 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378
           E+A  +F S+  +++V WNAMI+G A +GD    +++F +++    ++PD +TF+ V  A
Sbjct: 289 ELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKT-GIKPDDITFIAVFTA 347

Query: 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYG 438
           CS++ +  + + +  + M+  Y I+P  EH   ++ L+ + G    A  MIR +   S+ 
Sbjct: 348 CSYSGMAHEGL-QLLDKMSSLYEIEPKSEHYGCLVDLLSRAGLFGEAMVMIRRITSTSWN 406

Query: 439 -----VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
                + WRA LSA        +A  +A  +++LE  S  VYV+L NLY + G    A  
Sbjct: 407 GSEETLAWRAFLSACCNHGQAQLAERAAKRLLRLENHSG-VYVLLSNLYAASGKHSDARR 465

Query: 494 MRNFMRERGLRKEAGCSWIEVENVAA 519
           +RN MR +G+ K  GCS +E++ V +
Sbjct: 466 VRNMMRNKGVDKAPGCSSVEIDGVVS 491



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 127/264 (48%), Gaps = 35/264 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y + ++L+A + L   +  + +H Y  K G + ++FV  +LM  Y     +  A  +
Sbjct: 103 PDNYTIPYVLKACAALRDCSLGKMVHGYSSKLGLVFDIFVGNSLMAMYSVCGDVIAARHV 162

Query: 61  FVEIPQPSVVSWNS-------------------------------LISGYVQSGKYRKAL 89
           F E+P+ S VSW+                                +ISGYVQ+  +++ L
Sbjct: 163 FDEMPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGL 222

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
            LF  L+ + +  D   F S L+AC  LG+L +G+ IH  + + ++   + ++  L+DMY
Sbjct: 223 YLFRLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTVSLSIRLSTSLLDMY 282

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYN 205
            KCG++E A  +F  M ++DI+ WN++I+  A +G+   A      +      PD I++ 
Sbjct: 283 AKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIKPDDITFI 342

Query: 206 EVINGIAQFGDIEDAIMILSSMPS 229
            V    +  G   + + +L  M S
Sbjct: 343 AVFTACSYSGMAHEGLQLLDKMSS 366


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  244 bits (623), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 147/500 (29%), Positives = 258/500 (51%), Gaps = 22/500 (4%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLAD-AHKMFVEIPQPSVVSWNSLISGYVQ 81
           +QLH   +K+G + +   +  ++ F    +   D A  +F ++P+P+   WN+++    +
Sbjct: 36  KQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRILAE 95

Query: 82  SGKYR---KALNLF-VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER 137
           +       +AL LF   L    +  + ++F S L AC +   L+ G  IH  IVK+    
Sbjct: 96  TNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHE 155

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197
              + + L+ MY  C  +EDA  +F     K+++ ++         G+ ++      R  
Sbjct: 156 DEFVISNLVRMYVMCAVMEDAYSLFC----KNVVDFD---------GSCQMELD--KRKQ 200

Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
           + + + +N +I+G  + GDI+ A  +   MP  +  SWN +++GY       EA++LF E
Sbjct: 201 DGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQE 260

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           MQS ++  +  T  ++L  IA + AL  G  IH    K  ++   V+ SAL+DMYSKCG 
Sbjct: 261 MQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGS 320

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           ++ A  +F +L ++N +TW+A+I  +A +G     I  F  L     + P+ V ++ +L+
Sbjct: 321 IDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHF-HLMGKAGVTPNDVAYIGILS 379

Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
           ACSH  +  ++   +F  M K  G++P +EH   M+ L+G+ G +  A+ +IR +     
Sbjct: 380 ACSHAGL-VEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPD 438

Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497
            V+W+ALL A     +L +    A  +++L       YV L NLY S GNW+  + +R  
Sbjct: 439 DVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLK 498

Query: 498 MRERGLRKEAGCSWIEVENV 517
           M+   +RK+ GCSWIE+  +
Sbjct: 499 MKGMDIRKDPGCSWIEIHGI 518



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 109/223 (48%), Gaps = 5/223 (2%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  +L A + +G     + +H Y  K+    +  + +AL+  Y K  S+  A ++
Sbjct: 268 PNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQV 327

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +P+ + ++W+++I  +   G+   A+  F  + ++ +  +  ++   L+AC   G +
Sbjct: 328 FETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLV 387

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G +  S +VK   L+  +    C++D+ G+ G +E+A  +   M I+ D + W +++ 
Sbjct: 388 EEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLG 447

Query: 179 ASARNGNLELAFGF---LHRLPNPDTISYNEVINGIAQFGDIE 218
           A   + NL++       L  L   D+ SY  + N  A  G+ E
Sbjct: 448 ACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWE 490


>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
          Length = 788

 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 148/474 (31%), Positives = 242/474 (51%), Gaps = 34/474 (7%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           TAL+  Y +   L  A ++   +P+ + VSW +LI+ + Q G   +A+ L+ ++      
Sbjct: 317 TALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCR 376

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161
            +   F+S L+AC  L  L+ G  IH++ +K      V ++  LIDMY KC    DA  +
Sbjct: 377 PNISCFSSVLSACASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTI 436

Query: 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221
           F  +  K+I+ WNS+++                        SYN         G + +A+
Sbjct: 437 FDTLPQKNIVCWNSLVSG----------------------YSYN---------GKMVEAM 465

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
            +   MP+ N +SWN+I++GY    +  +AL  F  M +      E TFS++L   A L 
Sbjct: 466 YLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITFSSVLLACANLC 525

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           +L  G + H+  IK G++ SI + +AL DMY+K G ++ +  MF  +  +N VTW AMI 
Sbjct: 526 SLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQ 585

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           G A NG   + I LFE +     + P+  TFL +L ACSH  +  ++   YF+ M +  G
Sbjct: 586 GLAENGFAEESILLFEDMMAT-GMTPNEHTFLALLFACSHGGL-VEQAIHYFDKM-QALG 642

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I P  +H   M+ ++ + G +  A+ ++ +    S    W ALLSA     + ++A  +A
Sbjct: 643 ISPKEKHYTCMVDVLARAGRLAEAEALLMKTPSKSEANSWAALLSACNTYRNEEIAERAA 702

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
             + +L  D+   YV+L N+Y S G W  A+ +R  M+   L+K+ GCSW++V 
Sbjct: 703 KRLHELAKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVR 756



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 157/323 (48%), Gaps = 40/323 (12%)

Query: 42  TALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY 101
           T ++    K   +A+A +++ + P  SV  + + ISG+V++  +  AL +F ++    + 
Sbjct: 184 TTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMLSCRVR 243

Query: 102 ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS-LERGVVIANCLIDMYGKCGSVEDAIG 160
            +  +    + AC   G   L ++I    +K +  E  + + N LI +Y + G    A  
Sbjct: 244 PNGITIVCMIKACVGAGEFGLALSIVGLAIKSNFFESSIEVQNSLITLYLRMGDAAAARK 303

Query: 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220
           VF EM  KD++SW +++   + +G+L+ A   L  +P  + +S+  +I    Q G+  +A
Sbjct: 304 VFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEA 363

Query: 221 IMILSSMPS----PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           + + S M +    PN S                                    FS++LS 
Sbjct: 364 VKLYSQMLADGCRPNIS-----------------------------------CFSSVLSA 388

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            A L  L  G  IH+  +K G   ++ V+ +L+DMY KC +   A ++F +L +KN+V W
Sbjct: 389 CASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCW 448

Query: 337 NAMITGYARNGDLTKVIELFEQL 359
           N++++GY+ NG + + + LF+++
Sbjct: 449 NSLVSGYSYNGKMVEAMYLFKKM 471



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 110/234 (47%), Gaps = 4/234 (1%)

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS---WNSV 176
           L L +++H+  V+  +     +A+ L+  Y       +    FG+ +  D  S   ++ +
Sbjct: 96  LPLALSLHAHAVRSGVAADRSVASHLLTTYAAFARAAERDRAFGDCVAADAASPFAYDFM 155

Query: 177 IAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN 236
           ++   + G++  A      +P+   +SY  +++ + + G + +A+ +    PS + + + 
Sbjct: 156 VSEHVKAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFT 215

Query: 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296
           + ++G+V       AL +F +M S  V  +  T   M+    G       + I    IK 
Sbjct: 216 ATISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIVGLAIKS 275

Query: 297 G-LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
              ++SI V ++L+ +Y + G    A  +F  +  K++V+W A++  Y+ +GDL
Sbjct: 276 NFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDL 329



 Score = 42.4 bits (98), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 98/235 (41%), Gaps = 36/235 (15%)

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS------GIAGLSALTWGMLIHS 291
           +LT Y    R  E    FG+  + D     + +  M+S       IA    L  GM    
Sbjct: 121 LLTTYAAFARAAERDRAFGDCVAADAA-SPFAYDFMVSEHVKAGDIASARRLFDGMP--- 176

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
                  D ++V  + ++D   K G+V  A  ++      ++  + A I+G+ RN     
Sbjct: 177 -------DRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHN 229

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAAC--------SHTDIPFDKVSEYFESMTKDYGIK 403
            + +F ++ + R ++P+ +T + ++ AC        + + +     S +FES        
Sbjct: 230 ALGVFRKMLSCR-VRPNGITIVCMIKACVGAGEFGLALSIVGLAIKSNFFES-------- 280

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
            ++E   S+I L  + G+   A+++  E+      V W ALL       DLD AR
Sbjct: 281 -SIEVQNSLITLYLRMGDAAAARKVFDEMDVKDV-VSWTALLDVYSESGDLDGAR 333


>gi|15223809|ref|NP_177827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098688|sp|O49287.1|PP127_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial; Flags: Precursor
 gi|2829915|gb|AAC00623.1| Hypothetical protein [Arabidopsis thaliana]
 gi|332197804|gb|AEE35925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 695

 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 156/540 (28%), Positives = 267/540 (49%), Gaps = 65/540 (12%)

Query: 5   VLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEI 64
            L  +L+A ++L      +Q+H  IL  G   +  ++++L+  Y K   L  A  M  +I
Sbjct: 189 TLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQI 248

Query: 65  PQPS-------------------------------VVSWNSLISGYVQSGKYRKALNLFV 93
            +P                                V+ WNS+ISGY+ +    +AL LF 
Sbjct: 249 REPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFN 308

Query: 94  ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
           E+ R+E   D+ +  + + AC  LG L+ G  +H    K+ L   +V+A+ L+DMY KCG
Sbjct: 309 EM-RNETREDSRTLAAVINACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCG 367

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQ 213
           S  +A  +F E                               + + DTI  N +I     
Sbjct: 368 SPMEACKLFSE-------------------------------VESYDTILLNSMIKVYFS 396

Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
            G I+DA  +   + + +  SWNS+  G+       E L  F +M   D+P DE + S++
Sbjct: 397 CGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSV 456

Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           +S  A +S+L  G  + +     GLD+  VV+S+L+D+Y KCG VE    +F ++ + + 
Sbjct: 457 ISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDE 516

Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393
           V WN+MI+GYA NG   + I+LF+++ +V  ++P  +TF+ VL AC++  +  ++  + F
Sbjct: 517 VPWNSMISGYATNGQGFEAIDLFKKM-SVAGIRPTQITFMVVLTACNYCGL-VEEGRKLF 574

Query: 394 ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSD 453
           ESM  D+G  P  EH   M+ L+ + G V  A  ++ E+ F   G +W ++L    A   
Sbjct: 575 ESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSILRGCVANGY 634

Query: 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
             + + +A ++I+LE ++   YV L  ++ + G+W+ ++++R  MRE  + K  G SW +
Sbjct: 635 KAMGKKAAEKIIELEPENSVAYVQLSAIFATSGDWESSALVRKLMRENNVTKNPGSSWTD 694



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 203/442 (45%), Gaps = 80/442 (18%)

Query: 8   HLLRASSDLGWDTYCQQLHCYILKSGFLSN-VFVSTALMGFYRKINSLADAHKMFVEIPQ 66
            LL++ S    +T  +Q +  +LK GFLS+ V V+  L+  Y +   +  A  +F E+P 
Sbjct: 31  RLLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDEMPD 90

Query: 67  PSVVSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYADAYSFTSALAACGQLGSLQLGMA 125
            +  SWN++I GY+ SG+   +L  F  + ER     D YS+   ++   + G L    +
Sbjct: 91  RNYFSWNTMIEGYMNSGEKGTSLRFFDMMPER-----DGYSWNVVVSGFAKAGEL----S 141

Query: 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAAS---- 180
           +  ++     E+ VV  N L+  Y   G  E+A+ +F E+    D I+  +V+ A     
Sbjct: 142 VARRLFNAMPEKDVVTLNSLLHGYILNGYAEEALRLFKELNFSADAITLTTVLKACAELE 201

Query: 181 -------------------------------ARNGNLELAFGFLHRLPNPDTISYNEVIN 209
                                          A+ G+L +A   L ++  PD  S + +I+
Sbjct: 202 ALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALIS 261

Query: 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
           G A  G + ++  +     +     WNS+++GY+  N   EAL LF EM++ +   D  T
Sbjct: 262 GYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMRN-ETREDSRT 320

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK--------------- 314
            + +++   GL  L  G  +H    K GL   IVVAS LLDMYSK               
Sbjct: 321 LAAVINACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVE 380

Query: 315 ----------------CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
                           CG+++ A  +F  +  K+L++WN+M  G+++NG   + +E F Q
Sbjct: 381 SYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQ 440

Query: 359 LKTVRDLQPDSVTFLNVLAACS 380
           +  + DL  D V+  +V++AC+
Sbjct: 441 MHKL-DLPTDEVSLSSVISACA 461



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 17/212 (8%)

Query: 293 VIKQGLDASIV-VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
           ++K+G  +SIV VA+ LL MYS+ G++ IA ++F  +  +N  +WN MI GY  +G+   
Sbjct: 52  LLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGT 111

Query: 352 VIELFEQLKTVRDLQPDSVTF-LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410
            +  F       D+ P+   +  NV+ +              F +M      +  V    
Sbjct: 112 SLRFF-------DMMPERDGYSWNVVVSGFAKAGELSVARRLFNAMP-----EKDVVTLN 159

Query: 411 SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI--KLE 468
           S++      G    A R+ +EL F +  +    +L A      L   +   A+++   +E
Sbjct: 160 SLLHGYILNGYAEEALRLFKELNFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVE 219

Query: 469 GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
            DS  +   L N+Y   G+  +AS M   +RE
Sbjct: 220 CDSK-MNSSLVNVYAKCGDLRMASYMLEQIRE 250


>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
          Length = 523

 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 141/463 (30%), Positives = 245/463 (52%), Gaps = 12/463 (2%)

Query: 53  SLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL----ERSEIYADAYSFT 108
           ++A A+ +F +IP+P    +N+LI G   +   R A++L+  +        +  D  +F 
Sbjct: 27  AIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFP 86

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
             L AC  +G+   G+ +H+ +VK   E    + N LI M+  CG++  A  +F     +
Sbjct: 87  FVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRARE 146

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP 228
           D ++W+++I   AR G++  A       P  D +S+N +I   A+ GD+  A  +   +P
Sbjct: 147 DAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVP 206

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             +  SWN +++GYV       AL LF +MQ      D  T  ++LS  A    L  G  
Sbjct: 207 ERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQR 266

Query: 289 IHSCV----IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
           +HS +     + G    +V+ +AL+DMY+KCG ++ A  +F S+  K++ TWN+++ G A
Sbjct: 267 LHSSLSDMFSRNGF--PVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLA 324

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
            +G + + I++FE++   + ++PD +TF+ VL ACSH  +  DK  E+F  M   Y ++P
Sbjct: 325 LHGHVLESIDMFEKMLKGK-VRPDEITFVAVLIACSHGGM-VDKGREFFNLMQHKYRVEP 382

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
            ++H   M+ ++G+ G +  A   I  +      V+WR LLSA     ++++A+ +  ++
Sbjct: 383 NIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQL 442

Query: 465 IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEA 507
           +K   D    YV+L N+Y S G W  +  MR  M + G+ KEA
Sbjct: 443 LKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNKEA 485



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 6/177 (3%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           Y K   +A A ++F ++P+  VVSWN +ISGYV+ G +  AL LF +++R     D  + 
Sbjct: 189 YAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTM 248

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERG--VVIANCLIDMYGKCGSVEDAIGVFGEM 165
            S L+AC   G L +G  +HS +       G  VV+ N LIDMY KCGS++ A  VF  M
Sbjct: 249 LSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSM 308

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIE 218
            DKD+ +WNS++   A +G++  +     ++      PD I++  V+   +  G ++
Sbjct: 309 RDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVD 365



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 179/395 (45%), Gaps = 29/395 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++     +LRA + +G      Q+H +++K+G  S+ FV  AL+G +    +L  A  +
Sbjct: 80  PDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAAL 139

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +   V+W+++I+G  + G    A +LF E        D  S+   + A  + G +
Sbjct: 140 FDGRAREDAVAWSAMITGCARRGDIGAARDLFDECP----VKDLVSWNVMITAYAKRGDM 195

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI----DKDIISWNSV 176
            L   +  ++     ER VV  N +I  Y +CGS   A+ +F +M       DI++  S+
Sbjct: 196 ALARELFDQVP----ERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSL 251

Query: 177 IAASARNGNLELAFGFLHRLPNP------DTISYNEVINGIAQFGDIEDAIMILSSMPSP 230
           ++A A +G+L++       L +         +  N +I+  A+ G ++ A  +  SM   
Sbjct: 252 LSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDK 311

Query: 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML-----SGIAGLSALTW 285
           + S+WNSI+ G      V E++ +F +M    V  DE TF  +L      G+       +
Sbjct: 312 DVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFF 371

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYA 344
            ++ H    K  ++ +I     ++DM  + G ++ A     ++ C  N V W  +++   
Sbjct: 372 NLMQH----KYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACR 427

Query: 345 RNGDLTKVIELFEQLKTVR-DLQPDSVTFLNVLAA 378
            +G++        QL   R D   D V   N+ A+
Sbjct: 428 VHGEIELAKHANRQLLKARNDESGDYVLLSNIYAS 462



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 28/188 (14%)

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
           +A A  G +  A+    ++P PD   YN +I G A      DA+ + + M          
Sbjct: 20  SAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRM---------- 69

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
                                    V  D+ TF  +L     + A   G+ +H+ V+K G
Sbjct: 70  -----------------LRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAG 112

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
            ++   V +AL+ M++ CG + IA ++F    R++ V W+AMITG AR GD+    +LF+
Sbjct: 113 CESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFD 172

Query: 358 QLKTVRDL 365
           +   V+DL
Sbjct: 173 EC-PVKDL 179


>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 823

 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 141/463 (30%), Positives = 245/463 (52%), Gaps = 12/463 (2%)

Query: 53  SLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL----ERSEIYADAYSFT 108
           ++A A+ +F +IP+P    +N+LI G   +   R A++L+  +        +  D  +F 
Sbjct: 27  AIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFP 86

Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
             L AC  +G+   G+ +H+ +VK   E    + N LI M+  CG++  A  +F     +
Sbjct: 87  FVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRARE 146

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP 228
           D ++W+++I   AR G++  A       P  D +S+N +I   A+ GD+  A  +   +P
Sbjct: 147 DAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVP 206

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
             +  SWN +++GYV       AL LF +MQ      D  T  ++LS  A    L  G  
Sbjct: 207 ERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQR 266

Query: 289 IHSCV----IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA 344
           +HS +     + G    +V+ +AL+DMY+KCG ++ A  +F S+  K++ TWN+++ G A
Sbjct: 267 LHSSLSDMFSRNGF--PVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLA 324

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404
            +G + + I++FE++   + ++PD +TF+ VL ACSH  +  DK  E+F  M   Y ++P
Sbjct: 325 LHGHVLESIDMFEKMLKGK-VRPDEITFVAVLIACSHGGM-VDKGREFFNLMQHKYRVEP 382

Query: 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEV 464
            ++H   M+ ++G+ G +  A   I  +      V+WR LLSA     ++++A+ +  ++
Sbjct: 383 NIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQL 442

Query: 465 IKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEA 507
           +K   D    YV+L N+Y S G W  +  MR  M + G+ KEA
Sbjct: 443 LKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNKEA 485



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 6/177 (3%)

Query: 48  YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107
           Y K   +A A ++F ++P+  VVSWN +ISGYV+ G +  AL LF +++R     D  + 
Sbjct: 189 YAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTM 248

Query: 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERG--VVIANCLIDMYGKCGSVEDAIGVFGEM 165
            S L+AC   G L +G  +HS +       G  VV+ N LIDMY KCGS++ A  VF  M
Sbjct: 249 LSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSM 308

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIE 218
            DKD+ +WNS++   A +G++  +     ++      PD I++  V+   +  G ++
Sbjct: 309 RDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVD 365



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 180/396 (45%), Gaps = 31/396 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++     +LRA + +G      Q+H +++K+G  S+ FV  AL+G +    +L  A  +
Sbjct: 80  PDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAAL 139

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +   V+W+++I+G  + G    A +LF E        D  S+   + A  + G +
Sbjct: 140 FDGRAREDAVAWSAMITGCARRGDIGAARDLFDECP----VKDLVSWNVMITAYAKRGDM 195

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI----DKDIISWNSV 176
            L   +  ++     ER VV  N +I  Y +CGS   A+ +F +M       DI++  S+
Sbjct: 196 ALARELFDQVP----ERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSL 251

Query: 177 IAASARNGNLELAFGFLHRLPN-------PDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           ++A A +G+L++       L +       P  +  N +I+  A+ G ++ A  +  SM  
Sbjct: 252 LSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLG-NALIDMYAKCGSMKSAHEVFWSMRD 310

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML-----SGIAGLSALT 284
            + S+WNSI+ G      V E++ +F +M    V  DE TF  +L      G+       
Sbjct: 311 KDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREF 370

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGY 343
           + ++ H    K  ++ +I     ++DM  + G ++ A     ++ C  N V W  +++  
Sbjct: 371 FNLMQH----KYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSAC 426

Query: 344 ARNGDLTKVIELFEQLKTVR-DLQPDSVTFLNVLAA 378
             +G++        QL   R D   D V   N+ A+
Sbjct: 427 RVHGEIELAKHANRQLLKARNDESGDYVLLSNIYAS 462



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 28/188 (14%)

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
           +A A  G +  A+    ++P PD   YN +I G A      DA+ + + M          
Sbjct: 20  SAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRM---------- 69

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297
                                    V  D+ TF  +L     + A   G+ +H+ V+K G
Sbjct: 70  -----------------LRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAG 112

Query: 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
            ++   V +AL+ M++ CG + IA ++F    R++ V W+AMITG AR GD+    +LF+
Sbjct: 113 CESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFD 172

Query: 358 QLKTVRDL 365
           +   V+DL
Sbjct: 173 EC-PVKDL 179


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 144/465 (30%), Positives = 240/465 (51%), Gaps = 38/465 (8%)

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F ++  P+  +W +LI  Y   G   +AL+ +  + +  +   +++F++  +AC  +  
Sbjct: 65  LFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRH 124

Query: 120 LQLGMAIHSK-IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
             LG  +H++ ++       + + N +IDMY KCGS+  A  VF EM ++D+ISW  +I 
Sbjct: 125 SALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIV 184

Query: 179 ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSI 238
           A  R G++  A      LP  D ++                               W ++
Sbjct: 185 AYTRIGDMRAARDLFDGLPVKDMVT-------------------------------WTAM 213

Query: 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
           +TGY       +AL +F  ++ + V +DE T   ++S  A L A  +   I       G 
Sbjct: 214 VTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGF 273

Query: 299 DA--SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356
               +++V SAL+DMYSKCG VE A  +F+ +  +N+ ++++MI G+A +G     I+LF
Sbjct: 274 GVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLF 333

Query: 357 -EQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415
            + L+T   ++P+ VTF+ VL ACSH  +  D+  + F SM K YG+ PT E    M  L
Sbjct: 334 YDMLET--GVKPNHVTFVGVLTACSHAGL-VDQGQQLFASMEKCYGVAPTAELYACMTDL 390

Query: 416 MGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475
           + + G + +A +++  +   S G VW ALL AS    + DVA I++  + +LE D+   Y
Sbjct: 391 LSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFELEPDNIGNY 450

Query: 476 VMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAH 520
           ++L N Y S G WD  S +R  +RE+ L+K  G SW+E +N   H
Sbjct: 451 LLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIH 495



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 119/265 (44%), Gaps = 38/265 (14%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCY-ILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           P  +    L  A + +       QLH   +L  GF S+++V+ A++  Y K  SL  A  
Sbjct: 107 PISFTFSALFSACAAVRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARM 166

Query: 60  MFVEIPQPSVVSWNSLI-------------------------------SGYVQSGKYRKA 88
           +F E+P+  V+SW  LI                               +GY Q+     A
Sbjct: 167 VFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDA 226

Query: 89  LNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH--SKIVKYSLERGVVIANCLI 146
           L +F  L    +  D  +    ++AC QLG+ +    I   ++   + +   V++ + LI
Sbjct: 227 LEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALI 286

Query: 147 DMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPNPDTI 202
           DMY KCG+VE+A  VF  M ++++ S++S+I   A +G     ++L +  L     P+ +
Sbjct: 287 DMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHV 346

Query: 203 SYNEVINGIAQFGDIEDAIMILSSM 227
           ++  V+   +  G ++    + +SM
Sbjct: 347 TFVGVLTACSHAGLVDQGQQLFASM 371



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 113/242 (46%), Gaps = 13/242 (5%)

Query: 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
           ++ S + +PN  +W +++  Y  R  + +AL  +  M+ + V    +TFS + S  A + 
Sbjct: 64  LLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVR 123

Query: 282 ALTWGMLIHS-CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
               G  +H+  ++  G  + + V +A++DMY KCG +  A  +F  +  +++++W  +I
Sbjct: 124 HSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLI 183

Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
             Y R GD+    +LF+ L        D VT+  ++   +   +P D + E F  + +D 
Sbjct: 184 VAYTRIGDMRAARDLFDGLPV-----KDMVTWTAMVTGYAQNAMPMDAL-EVFRRL-RDE 236

Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQ--RMIRE---LGFGSYGVVWRALLSASGACSDLD 455
           G++        +I    Q G    A   R I E    G G   +V  AL+     C +++
Sbjct: 237 GVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVE 296

Query: 456 VA 457
            A
Sbjct: 297 EA 298


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 145/514 (28%), Positives = 262/514 (50%), Gaps = 29/514 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+  V   + +A    G  +  +++H   ++ G +S+ F+  AL+  Y K   +  A ++
Sbjct: 130 PHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRV 189

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++    VVSW S+ S YV  G  R  L +F E+  + +  ++ + +S L AC +L  L
Sbjct: 190 FDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDL 249

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G AIH   V++ +   V + + L+ +Y +C SV+ A  VF  M  +D++SWN V+ A 
Sbjct: 250 KSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAY 309

Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
             N                      E   G+A F  +       S     + ++WN+++ 
Sbjct: 310 FTN---------------------REYDKGLALFSQMS------SKGVEADEATWNAVIG 342

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           G +   +  +A+ +  +MQ+     ++ T S+ L   + L +L  G  +H  V +  L  
Sbjct: 343 GCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIG 402

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
            +   +AL+ MY+KCG + ++ ++F  +CRK++V WN MI   A +G+  +V+ LFE + 
Sbjct: 403 DLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESML 462

Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
               ++P+SVTF  VL+ CSH+ +  ++  + F SM +D+ ++P   H   M+ +  + G
Sbjct: 463 Q-SGIKPNSVTFTGVLSGCSHSRL-VEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAG 520

Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
            +  A   I+ +        W ALL A     ++++A+ISA ++ ++E ++   YV L N
Sbjct: 521 RLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFN 580

Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           +  +   W  AS  R  M+ERG+ K  GCSW++V
Sbjct: 581 ILVTAKLWSEASEARILMKERGITKTPGCSWLQV 614



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 109/233 (46%), Gaps = 4/233 (1%)

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           GD   A  +  ++P P+ ++ +++++ +  R    EA+ L+  ++++ +      F T+ 
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
                    +    +H   I+ G+ +   + +AL+  Y KC  VE A  +F  L  K++V
Sbjct: 140 KACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVV 199

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFE 394
           +W +M + Y   G     + +F ++     ++P+SVT  ++L ACS  ++   K      
Sbjct: 200 SWTSMSSCYVNCGLPRLGLAVFCEMGW-NGVKPNSVTLSSILPACS--ELKDLKSGRAIH 256

Query: 395 SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
                +G+   V  C +++ L  +   V +A R++ +L      V W  +L+A
Sbjct: 257 GFAVRHGMIENVFVCSALVSLYARCLSVKQA-RLVFDLMPHRDVVSWNGVLTA 308


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 153/518 (29%), Positives = 265/518 (51%), Gaps = 45/518 (8%)

Query: 40  VSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE 99
           ++T L+  Y     + +A  +F E+P+  VV+W  +I+GY     +  A  +F E+   E
Sbjct: 45  LATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEE 104

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG-SVEDA 158
           +  +A++ +S L AC  +  L  G  +H   +K+ L+  + + N L+DMY  C  S++DA
Sbjct: 105 LDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDA 164

Query: 159 IGVFGEMIDKDIISWNSVIAASARN----GNLELAFGFLHRLPNPDTISYNEVIN----- 209
             VF  +  K+ +SW ++IA         G L +    L      +  S++  +      
Sbjct: 165 CMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSI 224

Query: 210 GIAQFGDIEDAIM----ILSSMPSPNS--------------------------SSWNSIL 239
           G   FG+   A +      S++P  NS                           +WN+++
Sbjct: 225 GSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLI 284

Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
            GY  R+   E+L++F  M+S+    + +TF+++++  A L+ L  G  IH  +I++GLD
Sbjct: 285 AGY-ERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLD 343

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
            ++ +++AL+DMYSKCG +  +  +F  + R++LV+W AM+ GY  +G   + +ELF+  
Sbjct: 344 GNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFD-- 401

Query: 360 KTVRD-LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418
           K VR  ++PD V F+ +L+ACSH  +  D+   YF+ M  DY I P  E    ++ L+G+
Sbjct: 402 KMVRSGIRPDRVVFMAILSACSHAGL-VDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGR 460

Query: 419 KGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478
            G+V  A  +I  + F     VW   L A  A +  ++ +++A  ++ L       YVML
Sbjct: 461 AGKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVML 520

Query: 479 CNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
            N+Y + G W   + +R  M+  G +KE G SW+EV N
Sbjct: 521 SNIYAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGN 558



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 159/368 (43%), Gaps = 40/368 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKIN-SLADAHK 59
           PN + +  +L+A   +   +Y + +H   +K G    ++V  ALM  Y     S+ DA  
Sbjct: 107 PNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACM 166

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +F  I   + VSW +LI+GY         L +F ++   E+  + +SF+ A+ AC  +GS
Sbjct: 167 VFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGS 226

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
              G  +H+ + K+  E  + + N ++DMY +C    +A   F EM  +D+I+WN++IA 
Sbjct: 227 HTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAG 286

Query: 180 SARNGNLEL---------------AFGFLHRLPNPDTISY-------------------- 204
             R+   E                 F F   +    T+++                    
Sbjct: 287 YERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNL 346

Query: 205 ---NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+  ++ G+I D+  +   M   +  SW +++ GY       EA+ LF +M   
Sbjct: 347 ALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRS 406

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEI 320
            +  D   F  +LS  +    +  G+     ++    +     +   ++D+  + G+VE 
Sbjct: 407 GIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEE 466

Query: 321 ADSMFRSL 328
           A  +  S+
Sbjct: 467 AYELIESM 474



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 6/192 (3%)

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           +P   ++    +I      G I +A  +   MP  +  +W  ++ GY + N    A  +F
Sbjct: 38  IPKGPSVLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVF 97

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
            EM ++++  + +T S++L    G+  L++G L+H   IK GLD  I V +AL+DMY+ C
Sbjct: 98  CEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATC 157

Query: 316 G-QVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
              ++ A  +FR +  KN V+W  +I GY    D    + +F Q+  + +++ +  +F  
Sbjct: 158 CVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQM-LLEEVELNPFSFSI 216

Query: 375 VLAAC----SHT 382
            + AC    SHT
Sbjct: 217 AVRACTSIGSHT 228


>gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa]
 gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa]
          Length = 681

 Score =  244 bits (622), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 155/542 (28%), Positives = 269/542 (49%), Gaps = 66/542 (12%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + +VL  ++ A +DLG     +Q+H  IL      +  ++++L+  Y K   L  AH + 
Sbjct: 171 DTFVLATVIGACTDLGEIQCGKQIHARILIDNMELDSVLTSSLINLYGKCGDLDSAHCVL 230

Query: 62  VEIPQPS-------------------------------VVSWNSLISGYVQSGKYRKALN 90
             + +P                                VV WNSLISGYV + +  +A  
Sbjct: 231 NTMEEPDDFSLSALITGYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFL 290

Query: 91  LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
           LF ++++  +  D  +  + L+AC  L + Q G  +H+   K  L    V+A+  ID Y 
Sbjct: 291 LFNDMQKKGLKVDFSTLATILSACSSLCNSQHGKQMHAYACKVGLICDNVVASAFIDAYS 350

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVING 210
           KCGS+ DA  +F E                               L   DTI  N +I  
Sbjct: 351 KCGSLNDACKLFSE-------------------------------LKTYDTILLNSMITV 379

Query: 211 IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP-EALHLFGEMQSKDVPMDEYT 269
            +  G IEDA  I ++MPS +  SWNS++ G +++N  P EAL LF  M   D+ M+ + 
Sbjct: 380 YSNSGKIEDAKQIFNTMPSKSLISWNSMIVG-LSQNGCPVEALDLFCMMNKLDLRMNRFN 438

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
            ++++S  A +S+L  G  I +     GLD+  V++++L+D Y KCG +EI   +F ++ 
Sbjct: 439 LTSVISACASISSLELGEQIFARATVVGLDSDEVISTSLVDFYCKCGFIEIGRKLFDTMM 498

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389
           + + ++WN+M+ GYA NG   + + LF +++    ++P  +TF  VL+AC H  +   + 
Sbjct: 499 KSDEISWNSMLMGYATNGHGLEALTLFNEMRHA-GVRPTEITFTGVLSACDHCGL-VKEG 556

Query: 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
             +F  M  DY I P +EH   M+ L  + G +  A  +I+ + F +   +W ++L    
Sbjct: 557 WRWFNIMQYDYHIDPGIEHYSCMVDLFARAGCLEEAMNLIKRMPFEADASMWSSVLRGCM 616

Query: 450 ACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGC 509
           A  + D+    A ++I+L+ ++   YV L +++ + G+W+ ++++R  M+ER ++K  G 
Sbjct: 617 AHGEKDLGEKVAQQIIELDPENSGAYVQLSSIFATSGDWESSALVRKVMQERQVQKYPGY 676

Query: 510 SW 511
           SW
Sbjct: 677 SW 678



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 195/432 (45%), Gaps = 83/432 (19%)

Query: 23  QQLHCYILKSGFL-SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           +QLH    K G + S + ++  L+  Y +  S+ DAHK+F E+P  +  SWN++I GY++
Sbjct: 25  KQLHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDAHKLFDEMPHRNCFSWNTMIEGYMK 84

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           SG   +++ LF  +     Y+    F S  A  G+       M I  ++      R  V+
Sbjct: 85  SGNKERSIRLFDMMSNKNDYSWNVVF-SGFAKAGE-------MEIARRLFNEMPNRNGVV 136

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEM----IDK----------------------------- 168
            N +I  Y + GS  +A+ +F E+    +DK                             
Sbjct: 137 WNSMIHSYARNGSPREAVRLFKELNLDPLDKSCCDTFVLATVIGACTDLGEIQCGKQIHA 196

Query: 169 ----DIISWNSVIAASARN-----GNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIED 219
               D +  +SV+ +S  N     G+L+ A   L+ +  PD  S + +I G A  G + D
Sbjct: 197 RILIDNMELDSVLTSSLINLYGKCGDLDSAHCVLNTMEEPDDFSLSALITGYANHGRMND 256

Query: 220 AIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
           A        +     WNS+++GYV  N   EA  LF +MQ K + +D  T +T+LS  + 
Sbjct: 257 ARRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTLATILSACSS 316

Query: 280 LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC------------------------ 315
           L     G  +H+   K GL    VVASA +D YSKC                        
Sbjct: 317 LCNSQHGKQMHAYACKVGLICDNVVASAFIDAYSKCGSLNDACKLFSELKTYDTILLNSM 376

Query: 316 -------GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
                  G++E A  +F ++  K+L++WN+MI G ++NG   + ++LF  +  + DL+ +
Sbjct: 377 ITVYSNSGKIEDAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEALDLFCMMNKL-DLRMN 435

Query: 369 SVTFLNVLAACS 380
                +V++AC+
Sbjct: 436 RFNLTSVISACA 447



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 144/299 (48%), Gaps = 40/299 (13%)

Query: 119 SLQLGMAIHSKIVKYSL-ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI 177
           S+  G  +H    K  L +  + +AN L+ MY +CGS+ DA  +F EM  ++  SWN++I
Sbjct: 20  SIHQGKQLHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDAHKLFDEMPHRNCFSWNTMI 79

Query: 178 AASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNS 237
               ++GN E +      + N +  S+N V +G A+ G++E A  + + MP+ N   WNS
Sbjct: 80  EGYMKSGNKERSIRLFDMMSNKNDYSWNVVFSGFAKAGEMEIARRLFNEMPNRNGVVWNS 139

Query: 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDE-----YTFSTMLSGIAGLSALTWGMLIHSC 292
           ++  Y       EA+ LF E+     P+D+     +  +T++     L  +  G  IH+ 
Sbjct: 140 MIHSYARNGSPREAVRLFKELNLD--PLDKSCCDTFVLATVIGACTDLGEIQCGKQIHAR 197

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMF--------------------------- 325
           ++   ++   V+ S+L+++Y KCG ++ A  +                            
Sbjct: 198 ILIDNMELDSVLTSSLINLYGKCGDLDSAHCVLNTMEEPDDFSLSALITGYANHGRMNDA 257

Query: 326 -RSLCRKN---LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            R+  RK+   +V WN++I+GY  N +  +   LF  ++  + L+ D  T   +L+ACS
Sbjct: 258 RRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQK-KGLKVDFSTLATILSACS 315


>gi|218189824|gb|EEC72251.1| hypothetical protein OsI_05387 [Oryza sativa Indica Group]
          Length = 566

 Score =  244 bits (622), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 161/538 (29%), Positives = 274/538 (50%), Gaps = 45/538 (8%)

Query: 24  QLHCYILKSGF-LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q H    K GF  SN F +TAL+ FY +   L +A  +F ++P  + V+WN+LI G+ QS
Sbjct: 32  QCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQS 91

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
                A+  F  + R+ +   A S +S L AC +L +   G  +HS  ++      VV+ 
Sbjct: 92  TAPDLAVAAFARMVRAGVSPTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVG 151

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA---SARNGNLELAFGFLHRLP-N 198
             L+DMY KC  +  A  VFGEM +K++ ++ +++     S R  +  L    + R    
Sbjct: 152 TALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVA 211

Query: 199 PDTISYNEVINGIAQFGDI-----------------------------------EDAIMI 223
           P+ ++Y+ +++  A   DI                                   ED + +
Sbjct: 212 PNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKV 271

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
             S+   +  S+NS+++G     R  EA   F EM+     MD +TF+++L  I   S+L
Sbjct: 272 QMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSL 331

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H+ ++K G D+ + V ++L+ MY++ G +  ++ +F S+   NLV+WN++++G 
Sbjct: 332 LEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGC 391

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT-KDYGI 402
           A++G   +V+E+FEQ++ +  +QPD +TFL+VL ACSH  +  DK  EYF  M  K Y +
Sbjct: 392 AQHGHGKEVVEMFEQMRRLH-VQPDHITFLSVLTACSHVGL-VDKGLEYFNLMKDKGYLV 449

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
               +H   M+ L+G+ G +  A+ +I  +       V+RALLSA     +L++A   + 
Sbjct: 450 GARTKHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIAIRVSK 509

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAH 520
            +++L      V+V L N +   G W  A+ +R  M  +G+ KE   SW  +E+   H
Sbjct: 510 RLMELNPHDSSVHVQLSNAFAGDGRWGNAAEIRETMSGKGIVKEP--SWSRIEDQMQH 565



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 112/206 (54%), Gaps = 6/206 (2%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           + +Q+HC +LK G   + FV +AL+  Y K     D  K+ + +     VS+NS+ISG  
Sbjct: 232 HGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISGLS 291

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
             G+ ++A   F+E+ R     D ++F S L A G   SL  G  +H+ I+K   +  V 
Sbjct: 292 CLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSLLEGRQVHTLILKIGYDSVVD 351

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRL 196
           + N LI MY + G++ ++ GVF  M   +++SWNS+++  A++G+    +E+ F  + RL
Sbjct: 352 VQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEM-FEQMRRL 410

Query: 197 P-NPDTISYNEVINGIAQFGDIEDAI 221
              PD I++  V+   +  G ++  +
Sbjct: 411 HVQPDHITFLSVLTACSHVGLVDKGL 436


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 156/545 (28%), Positives = 266/545 (48%), Gaps = 77/545 (14%)

Query: 16  LGWDTYCQQLHCYILKSGF-LSNVFVSTALMGFYRK--------INSLADAHKMFVEIPQ 66
           +G +  C Q+HC ++K+G    +  V  AL+  Y K         +++  A K+F E+P+
Sbjct: 161 VGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPK 220

Query: 67  PSVVSW-------------------------------NSLISGYVQSGKYRKALNLFVEL 95
              ++W                               N++ISGYV  G +++AL L  ++
Sbjct: 221 RDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKM 280

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG----VVIANCLIDMYGK 151
               I  D  ++T+ ++AC  +GS Q+G  +H+ I+K  L       + ++N LI +Y K
Sbjct: 281 RFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCK 340

Query: 152 CGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGI 211
              V++A  +F                               + +P  + I++N +++G 
Sbjct: 341 NNKVDEARKIF-------------------------------YAMPVRNIITWNAILSGY 369

Query: 212 AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271
              G +E+A      MP  N  +   +++G        E L LF +M+       ++ F+
Sbjct: 370 VNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFA 429

Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
             L+  + L AL  G  +H+ ++  G ++S+ V +A++ MY+KCG VE A+S+F ++   
Sbjct: 430 GALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSV 489

Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE 391
           +LV+WN+MI    ++G   K IELF+Q+     + PD +TFL VL ACSH  +  +K   
Sbjct: 490 DLVSWNSMIAALGQHGHGVKAIELFDQMLK-EGVFPDRITFLTVLTACSHAGL-VEKGRH 547

Query: 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC 451
           YF SM + YGI P  +H   M+ L  + G    A+ +I  +       VW ALL+     
Sbjct: 548 YFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIH 607

Query: 452 SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSW 511
            ++D+   +A ++ KL   +D  YV+L N+Y   G W+  + +R  MR++ +RKE  CSW
Sbjct: 608 GNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSW 667

Query: 512 IEVEN 516
           IEVEN
Sbjct: 668 IEVEN 672



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 177/386 (45%), Gaps = 82/386 (21%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVS----------- 71
           + +H +++ SGF         L+  Y K +++  A ++F EIP P  ++           
Sbjct: 33  RAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCAL 92

Query: 72  ----------------------WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
                                 +N++I+GY  +G    AL LF  + R +   D ++FTS
Sbjct: 93  GNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTS 152

Query: 110 ALAACGQ-LGSLQLGMAIHSKIVKYSLERGVV---IANCLIDMYGK--------CGSVED 157
            L+A    +G+ Q    +H  +VK  +  G V   + N L+ +Y K        C ++  
Sbjct: 153 VLSALVLFVGNEQQCGQMHCAVVKTGM--GCVSSSVLNALLSVYVKRASELGIPCSAMVS 210

Query: 158 AIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDI 217
           A  +F EM  +D ++W ++I    RN +L                      NG  +    
Sbjct: 211 ARKLFDEMPKRDELTWTTMITGYVRNDDL----------------------NGARE---- 244

Query: 218 EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277
                +  +M     ++WN++++GYV+     EAL L  +M+   +  D+ T++T++S  
Sbjct: 245 -----VFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISAC 299

Query: 278 AGLSALTWGMLIHSCVIKQGLDAS----IVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
           A + +   G  +H+ ++K  L+ +    + V++AL+ +Y K  +V+ A  +F ++  +N+
Sbjct: 300 ANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNI 359

Query: 334 VTWNAMITGYARNGDLTKVIELFEQL 359
           +TWNA+++GY   G + +    FE++
Sbjct: 360 ITWNAILSGYVNAGRMEEAKSFFEEM 385



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 128/258 (49%), Gaps = 39/258 (15%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSN----VFVSTALMGFYRKINSLADAHKMFVEI 64
           ++ A +++G     +Q+H YILK+    N    + VS AL+  Y K N + +A K+F  +
Sbjct: 295 IISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAM 354

Query: 65  PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEI--------------YADA------ 104
           P  ++++WN+++SGYV +G+  +A + F E+    +              + D       
Sbjct: 355 PVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFK 414

Query: 105 -----------YSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153
                      ++F  AL AC  LG+L+ G  +H+++V    E  + + N +I MY KCG
Sbjct: 415 QMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCG 474

Query: 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPNPDTISYNEVIN 209
            VE A  VF  M   D++SWNS+IAA  ++G+    +EL    L     PD I++  V+ 
Sbjct: 475 VVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLT 534

Query: 210 GIAQFGDIEDAIMILSSM 227
             +  G +E      +SM
Sbjct: 535 ACSHAGLVEKGRHYFNSM 552



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P ++     L A S LG     +QLH  ++  G+ S++ V  A++  Y K   +  A  +
Sbjct: 423 PCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESV 482

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           FV +P   +VSWNS+I+   Q G   KA+ LF ++ +  ++ D  +F + L AC   G +
Sbjct: 483 FVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLV 542

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD-IISWNSVIA 178
           + G    +S +  Y +         ++D++ + G    A  V   M  K     W +++A
Sbjct: 543 EKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLA 602

Query: 179 ASARNGNLELA 189
               +GN++L 
Sbjct: 603 GCRIHGNMDLG 613



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 303 VVASALLDMYSKCGQVEIADSMFR--SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           +  + L+  Y   G +E+   +F    L  ++ V +NAMITGYA NGD    +ELF  ++
Sbjct: 80  IARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMR 139

Query: 361 TVRDLQPDSVTFLNVLAA 378
              D +PD  TF +VL+A
Sbjct: 140 R-DDFRPDDFTFTSVLSA 156


>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 553

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 140/473 (29%), Positives = 251/473 (53%), Gaps = 10/473 (2%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD 103
           L   +R    L  A ++F ++P  +V+SWNS+++G +  G    A   F    R  +   
Sbjct: 45  LTALWRAGRDLPAARRLFDDMPSRNVISWNSVVAGCLAHGDLDAASAYFARAPRRNVA-- 102

Query: 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
             S+ + LA   +LG +    A+  ++     +R VV    ++D   + G V  A  VF 
Sbjct: 103 --SWNAMLAGLVRLGRMDDAWALFGEMP----QRNVVSYTTMVDGLARRGEVARAREVFD 156

Query: 164 EMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMI 223
            M +++++SW ++I     N   + A      +P+ + ++   +I G  + GD+E A  +
Sbjct: 157 AMPERNLVSWAAMITGYVENAMFDEARKLFEAMPDKNVVACTAMITGYCKDGDVESARRL 216

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
              +P  +  SWN+++TGYV+     EA+ L   M  + V  D  T   +L+  + L+ L
Sbjct: 217 FDGIPVKDVISWNAMITGYVHNGHGEEAMKLHIIMFREGVKPDHATLIAILTACSALALL 276

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G   H+   K  L++S    +AL+ MYSKCG V  ++ +F +L  +++V+WN +I  Y
Sbjct: 277 RQGRSTHAVATKTMLESSTSFCNALMTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAY 336

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
           A++G   K I LF +++T R L P+ +T L++L+AC H     D + E F+ M+  Y I 
Sbjct: 337 AQHGKYQKAIALFHEMET-RGLIPNDITILSMLSACGHVGRVNDSL-ELFDLMSSKYAIS 394

Query: 404 PTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463
           P+ EH   ++ ++G+ G++ +A   I+++ F +   VW ALL AS    ++ +  ++A  
Sbjct: 395 PSAEHYACVVDILGRAGQLEKACSYIKKMPFEAERNVWGALLGASKTHGNVQLGELAAKM 454

Query: 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +++ +  S   YVML N+Y + G W   + +R  M+E+G++K+ G SW E+ N
Sbjct: 455 LVQSDSVSSGPYVMLSNIYAAAGMWGEVNRVRGQMKEKGVKKQPGYSWTEIAN 507



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 135/273 (49%), Gaps = 35/273 (12%)

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-NLELAFGFLHR 195
           R +V  N  I    + G V  A  VF  M  +D++SWN+++ A  R G +L  A      
Sbjct: 5   RLLVRDNQRITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDD 64

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           +P+ + IS+N V+ G    GD++ A    +  P  N +SWN++L G V   R+ +A  LF
Sbjct: 65  MPSRNVISWNSVVAGCLAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDAWALF 124

Query: 256 GEMQSKDVPMDEYTFSTMLSGIA----------------GLSALTWGMLIHSCV------ 293
           GEM  ++V     +++TM+ G+A                  + ++W  +I   V      
Sbjct: 125 GEMPQRNV----VSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFD 180

Query: 294 -----IKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
                 +   D ++V  +A++  Y K G VE A  +F  +  K++++WNAMITGY  NG 
Sbjct: 181 EARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGH 240

Query: 349 LTKVIELFEQLKTVRD-LQPDSVTFLNVLAACS 380
             + ++L   +   R+ ++PD  T + +L ACS
Sbjct: 241 GEEAMKL--HIIMFREGVKPDHATLIAILTACS 271



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 4/197 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV   TA++  Y K   +  A ++F  IP   V+SWN++I+GYV +G   +A+ L + + 
Sbjct: 193 NVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHGEEAMKLHIIMF 252

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           R  +  D  +  + L AC  L  L+ G + H+   K  LE      N L+ MY KCG+V 
Sbjct: 253 REGVKPDHATLIAILTACSALALLRQGRSTHAVATKTMLESSTSFCNALMTMYSKCGNVG 312

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIA 212
           ++  VF  +  +DI+SWN++IAA A++G  + A    H +      P+ I+   +++   
Sbjct: 313 ESELVFMNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLIPNDITILSMLSACG 372

Query: 213 QFGDIEDAIMILSSMPS 229
             G + D++ +   M S
Sbjct: 373 HVGRVNDSLELFDLMSS 389



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 2/205 (0%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L A S L      +  H    K+   S+     ALM  Y K  ++ ++  +
Sbjct: 258 PDHATLIAILTACSALALLRQGRSTHAVATKTMLESSTSFCNALMTMYSKCGNVGESELV 317

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F+ +    +VSWN++I+ Y Q GKY+KA+ LF E+E   +  +  +  S L+ACG +G +
Sbjct: 318 FMNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLIPNDITILSMLSACGHVGRV 377

Query: 121 QLGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
              + +   +  KY++        C++D+ G+ G +E A     +M  + +   W +++ 
Sbjct: 378 NDSLELFDLMSSKYAISPSAEHYACVVDILGRAGQLEKACSYIKKMPFEAERNVWGALLG 437

Query: 179 ASARNGNLELAFGFLHRLPNPDTIS 203
           AS  +GN++L       L   D++S
Sbjct: 438 ASKTHGNVQLGELAAKMLVQSDSVS 462



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/380 (21%), Positives = 162/380 (42%), Gaps = 62/380 (16%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV    A++    ++  + DA  +F E+PQ +VVS+ +++ G  + G+  +A  +F  + 
Sbjct: 100 NVASWNAMLAGLVRLGRMDDAWALFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMP 159

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHS-KIVKYSLERGVVIANCLIDMYGKCGSV 155
              + + A   T         G ++  M   + K+ +   ++ VV    +I  Y K G V
Sbjct: 160 ERNLVSWAAMIT---------GYVENAMFDEARKLFEAMPDKNVVACTAMITGYCKDGDV 210

Query: 156 EDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL-----PNPDTISY------ 204
           E A  +F  +  KD+ISWN++I     NG+ E A   LH +       PD  +       
Sbjct: 211 ESARRLFDGIPVKDVISWNAMITGYVHNGHGEEAMK-LHIIMFREGVKPDHATLIAILTA 269

Query: 205 -----------------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSW 235
                                        N ++   ++ G++ ++ ++  ++   +  SW
Sbjct: 270 CSALALLRQGRSTHAVATKTMLESSTSFCNALMTMYSKCGNVGESELVFMNLKIQDIVSW 329

Query: 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM-LIHSCVI 294
           N+I+  Y    +  +A+ LF EM+++ +  ++ T  +MLS    +  +   + L      
Sbjct: 330 NTIIAAYAQHGKYQKAIALFHEMETRGLIPNDITILSMLSACGHVGRVNDSLELFDLMSS 389

Query: 295 KQGLDASIVVASALLDMYSKCGQVEIADSMFRSL---CRKNLVTWNAMITGYARNGDLTK 351
           K  +  S    + ++D+  + GQ+E A S  + +     +N+  W A++     +G++  
Sbjct: 390 KYAISPSAEHYACVVDILGRAGQLEKACSYIKKMPFEAERNV--WGALLGASKTHGNVQ- 446

Query: 352 VIELFEQLKTVRDLQPDSVT 371
                 +L     +Q DSV+
Sbjct: 447 ----LGELAAKMLVQSDSVS 462



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 112/236 (47%), Gaps = 42/236 (17%)

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNR-VPEALHLFGEMQSKDV 263
           N+ I  +A+ GD+  A  +  +MP  +  SWN++LT      R +P A  LF +M S++V
Sbjct: 11  NQRITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDDMPSRNV 70

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV---------VAS--ALLDMY 312
                              ++W  ++  C+    LDA+           VAS  A+L   
Sbjct: 71  -------------------ISWNSVVAGCLAHGDLDAASAYFARAPRRNVASWNAMLAGL 111

Query: 313 SKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372
            + G+++ A ++F  + ++N+V++  M+ G AR G++ +  E+F+ +   R+L    V++
Sbjct: 112 VRLGRMDDAWALFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPE-RNL----VSW 166

Query: 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM 428
             ++       + FD+  + FE+M         V  C +MI    + G+V  A+R+
Sbjct: 167 AAMITGYVENAM-FDEARKLFEAMPDK-----NVVACTAMITGYCKDGDVESARRL 216


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 153/551 (27%), Positives = 261/551 (47%), Gaps = 73/551 (13%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF-VEL 95
           N+F    L+  Y K+  L D  ++F  +P   VVSWNSL+SGY  +G   +++ ++ + L
Sbjct: 70  NLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMML 129

Query: 96  ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155
           +   +  +  +F++ L      G + LG  IH +I K+  +  + + + L+DMY K G +
Sbjct: 130 KDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFI 189

Query: 156 EDAIGVFGE-------------------------------MIDKDIISWNSVIAASARNG 184
            DA  +F E                               M +KD ISW ++I    +NG
Sbjct: 190 NDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNG 249

Query: 185 NLELAFGFLHRLPNP----DTISYNEVINGIAQF---------------GDIEDAIMILS 225
             + A      +       D  ++  V+     F                D +D I + S
Sbjct: 250 LFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGS 309

Query: 226 S--------------------MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
           +                    M   N  SW ++L GY       EA+ +F +MQ  ++  
Sbjct: 310 ALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHP 369

Query: 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
           D++T  +++S  A L++L  G   H   +  GL   + V++AL+ +Y KCG +E A  +F
Sbjct: 370 DDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLF 429

Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
             +  ++ V+W A+++GYA+ G   + I LFE +     + PD VTF+ VL+ACS   + 
Sbjct: 430 HEMKIRDEVSWTALVSGYAQFGKANETISLFETM-LAHGIVPDGVTFVGVLSACSRAGL- 487

Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
            +K   YFE M K++ I P  +H   MI L+ + G +  A+  I ++ F    + W  LL
Sbjct: 488 VEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLL 547

Query: 446 SASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505
           S+     +L++ + +A  + KLE  +   Y++L ++Y + G WD  + +R  MRE G++K
Sbjct: 548 SSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKK 607

Query: 506 EAGCSWIEVEN 516
           E G SWI+ +N
Sbjct: 608 EPGHSWIKYKN 618



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 191/415 (46%), Gaps = 52/415 (12%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
           +L  SS+ G+    +Q+H  I K G+ S +FV + L+  Y K   + DA+++F EIP+ +
Sbjct: 144 MLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKN 203

Query: 69  VV-------------------------------SWNSLISGYVQSGKYRKALNLFVELER 97
           +V                               SW ++I+G  Q+G +++A++ F E+  
Sbjct: 204 IVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGI 263

Query: 98  SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED 157
                D ++F S L ACG   +L  G  IH+ I++   +  + + + L+DMY KC +V+ 
Sbjct: 264 EGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKY 323

Query: 158 AIGVFGEMIDKDIISWNSVIAASARNGNLELA---FGFLHRLP-NPDTISYNEVINGIAQ 213
           A  VF +M  K++ISW +++    +NG  E A   F  + R   +PD  +   VI+  A 
Sbjct: 324 AEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCAN 383

Query: 214 FGDIEDAIMI----LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269
              +E+        L+S      +  N+++T Y     +  A  LF EM+ +    DE +
Sbjct: 384 LASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIR----DEVS 439

Query: 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           ++ ++SG A        + +   ++  G+    V    +L   S+ G VE     F  + 
Sbjct: 440 WTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMV 499

Query: 330 RKNLVT-----WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           +++ +T     +  MI   +R G L +      Q+       PD++ +  +L++C
Sbjct: 500 KEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMP----FSPDAIGWATLLSSC 550



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 139/290 (47%), Gaps = 36/290 (12%)

Query: 107 FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166
           +T+AL  C +  +      +H +I++        + N LI+ YGK G +++A  VF  + 
Sbjct: 8   YTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIP 67

Query: 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226
             ++ SWN++++A ++ G L+        +PN D +S+N +++G A  G I +++ + + 
Sbjct: 68  QPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNM 127

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           M          +  G VN NR+                    TFSTML   +    +  G
Sbjct: 128 M----------LKDGSVNLNRI--------------------TFSTMLILSSNRGFVDLG 157

Query: 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
             IH  + K G  + + V S L+DMY+K G +  A+ +F  +  KN+V +N MITG  R 
Sbjct: 158 RQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRC 217

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
             + +  +LF+ +      + DS+++  ++   +   + F +  + F+ M
Sbjct: 218 RFIVEAEQLFDNMP-----EKDSISWTTIITGLTQNGL-FKEAVDKFKEM 261



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 106/211 (50%), Gaps = 9/211 (4%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++ L  ++ + ++L       Q H   L SG +  V VS AL+  Y K  SL  AH++
Sbjct: 369 PDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQL 428

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+     VSW +L+SGY Q GK  + ++LF  +    I  D  +F   L+AC + G +
Sbjct: 429 FHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLV 488

Query: 121 QLGMAIHSKIVKYSLERGVVIAN---CLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSV 176
           + G      +VK    R   I +   C+ID+  + G +E+A     +M    D I W ++
Sbjct: 489 EKGYHYFECMVKE--HRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATL 546

Query: 177 IAASARNGNLEL---AFGFLHRLPNPDTISY 204
           +++   NGNLE+   A   LH+L   +  SY
Sbjct: 547 LSSCRLNGNLEIGKWAAESLHKLEPQNPASY 577


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 164/556 (29%), Positives = 268/556 (48%), Gaps = 42/556 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ Y    +LR+   +      +++H ++L+ GF   V V  ALM  Y K   +  A K+
Sbjct: 193 PDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKV 252

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     +SWN++I+G+ ++G+    L LF+ + + E+  +  + TS   A G L  +
Sbjct: 253 FDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDI 312

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
                +H   VK      V   N LI MY   G +  A  VF  M  +D +SW ++I+  
Sbjct: 313 TFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGY 372

Query: 181 ARNGNLELAFGFLHRLP----NPDTI-------------------------------SYN 205
            +NG  + A      +     +PD I                               SY 
Sbjct: 373 EKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYV 432

Query: 206 EVINGI----AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
            V N +    A+   I+ AI +   MP  +  SW+S++ G+   +R  EAL+ F  M + 
Sbjct: 433 VVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLA- 491

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
           DV  +  TF   L+  A   AL  G  IH+ V++ G+     + +AL+D+Y KCGQ   A
Sbjct: 492 DVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYA 551

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
            + F +   K++V+WN MI G+  +G+    +  F Q+  + +  PD VTF+ +L ACS 
Sbjct: 552 WAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKIGEC-PDEVTFVALLCACSR 610

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             +   +  E F SMT  Y I P ++H   M+ L+ + G++  A   I E+       VW
Sbjct: 611 GGM-VSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVW 669

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            ALL+       +++  ++A  V++LE +    +V+LC+LY   G WD  + +R  MRE+
Sbjct: 670 GALLNGCRIHRHVELGELAAKYVLELEPNDAGYHVLLCDLYADAGIWDKLARVRKTMREK 729

Query: 502 GLRKEAGCSWIEVENV 517
           GL  ++GCSW+EV+ V
Sbjct: 730 GLDHDSGCSWVEVKGV 745



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 182/373 (48%), Gaps = 41/373 (10%)

Query: 40  VSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE 99
           +  A++    +      A ++F ++P+  V SWN ++ GY ++G   +AL+L+  +  + 
Sbjct: 131 LGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAG 190

Query: 100 IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159
           +  D Y+F   L +CG +   ++G  +H+ ++++     V + N L+ MY KCG V  A 
Sbjct: 191 VRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAAR 250

Query: 160 GVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRLPNPDTISY----------- 204
            VF  M   D ISWN++IA    NG     LEL    L     P+ ++            
Sbjct: 251 KVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLS 310

Query: 205 ------------------------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                                   N +I   A  G +  A  + S M + ++ SW ++++
Sbjct: 311 DITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMIS 370

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           GY       +AL ++  M+  +V  D+ T ++ L+  A L +L  G+ +H     +G  +
Sbjct: 371 GYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMS 430

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
            +VV +ALL+MY+K  +++ A  +F+ +  K++V+W++MI G+  N    + +  F  + 
Sbjct: 431 YVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHM- 489

Query: 361 TVRDLQPDSVTFL 373
            + D++P+SVTF+
Sbjct: 490 -LADVKPNSVTFI 501



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 8/245 (3%)

Query: 205 NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
           N +++ + +FG+   A  + + MP  +  SWN ++ GY     + EAL L+  M    V 
Sbjct: 133 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVR 192

Query: 265 MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM 324
            D YTF  +L    G+     G  +H+ V++ G    + V +AL+ MY+KCG V  A  +
Sbjct: 193 PDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKV 252

Query: 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACS-HT 382
           F S+   + ++WNAMI G+  NG+    +ELF  L  ++D +QP+ +T  +V  A    +
Sbjct: 253 FDSMAVMDCISWNAMIAGHFENGECNAGLELF--LTMLQDEVQPNLMTITSVTVASGLLS 310

Query: 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWR 442
           DI F K       +    G    V  C S+I++    G + +A+ +   +      + W 
Sbjct: 311 DITFAK---EMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRD-AMSWT 366

Query: 443 ALLSA 447
           A++S 
Sbjct: 367 AMISG 371



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 122/273 (44%), Gaps = 40/273 (14%)

Query: 138 GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL- 196
           G+ + N ++ M  + G    A  VF +M ++D+ SWN ++    + G LE A    HR+ 
Sbjct: 128 GLRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMM 187

Query: 197 ---PNPDTISYN-------------------------------EVINGI----AQFGDIE 218
                PD  ++                                +V+N +    A+ GD+ 
Sbjct: 188 WAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVV 247

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
            A  +  SM   +  SWN+++ G+         L LF  M   +V  +  T +++     
Sbjct: 248 AARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASG 307

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            LS +T+   +H   +K+G    +   ++L+ MY+  G +  A ++F  +  ++ ++W A
Sbjct: 308 LLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTA 367

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371
           MI+GY +NG   K +E++  L  V ++ PD +T
Sbjct: 368 MISGYEKNGFPDKALEVY-ALMEVNNVSPDDIT 399


>gi|57899214|dbj|BAD87363.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222619954|gb|EEE56086.1| hypothetical protein OsJ_04925 [Oryza sativa Japonica Group]
          Length = 566

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 161/538 (29%), Positives = 274/538 (50%), Gaps = 45/538 (8%)

Query: 24  QLHCYILKSGF-LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q H    K GF  SN F +TAL+ FY +   L +A  +F ++P  + V+WN+LI G+ QS
Sbjct: 32  QCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQS 91

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
                A+  F  + R+ +   A S +S L AC +L +   G  +HS  ++      VV+ 
Sbjct: 92  TAPDLAVAAFARMVRAGVSPTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVG 151

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA---SARNGNLELAFGFLHRLP-N 198
             L+DMY KC  +  A  VFGEM +K++ ++ +++     S R  +  L    + R    
Sbjct: 152 TALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVA 211

Query: 199 PDTISYNEVINGIAQFGDI-----------------------------------EDAIMI 223
           P+ ++Y+ +++  A   DI                                   ED + +
Sbjct: 212 PNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKV 271

Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSAL 283
             S+   +  S+NS+++G     R  EA   F EM+     MD +TF+++L  I   S+L
Sbjct: 272 QMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSL 331

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGY 343
             G  +H+ ++K G D+ + V ++L+ MY++ G +  ++ +F S+   NLV+WN++++G 
Sbjct: 332 LEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGC 391

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT-KDYGI 402
           A++G   +V+E+FEQ++ +  +QPD +TFL+VL ACSH  +  DK  EYF  M  K Y +
Sbjct: 392 AQHGHGKEVVEMFEQMRRLH-VQPDHITFLSVLTACSHVGL-VDKGLEYFNLMKDKGYLV 449

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
               +H   M+ L+G+ G +  A+ +I  +       V+RALLSA     +L++A   + 
Sbjct: 450 GARTKHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIAIRVSK 509

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAH 520
            +++L      V+V L N +   G W  A+ +R  M  +G+ KE   SW  +E+   H
Sbjct: 510 RLMELNPHDSSVHVQLSNAFAGDGRWGNAAEIRETMSGKGIVKEP--SWSRIEDQMQH 565



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 112/206 (54%), Gaps = 6/206 (2%)

Query: 21  YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           + +Q+HC +LK G   + FV +AL+  Y K     D  K+ + +     VS+NS+ISG  
Sbjct: 232 HGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISGLS 291

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
             G+ ++A   F+E+ R     D ++F S L A G   SL  G  +H+ I+K   +  V 
Sbjct: 292 CLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSLLEGRQVHTLILKIGYDSVVD 351

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LELAFGFLHRL 196
           + N LI MY + G++ ++ GVF  M   +++SWNS+++  A++G+    +E+ F  + RL
Sbjct: 352 VQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEM-FEQMRRL 410

Query: 197 P-NPDTISYNEVINGIAQFGDIEDAI 221
              PD I++  V+   +  G ++  +
Sbjct: 411 HVQPDHITFLSVLTACSHVGLVDKGL 436


>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
 gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
 gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
 gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
 gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
          Length = 622

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 145/481 (30%), Positives = 250/481 (51%), Gaps = 11/481 (2%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           NV   TAL+  Y +   + +A  +F  + + +VVSWN+++  Y   G+   A  LF  + 
Sbjct: 103 NVVTWTALLSGYARARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMP 162

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
                 DA S+   L    + GSL+       K+ +    R V+    +I    + GSV+
Sbjct: 163 ----VRDAGSWNILLCGLVRSGSLERA----RKMFERMPVRDVMSWTTMISGLARNGSVD 214

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216
           DA  +F  M +++++SWN++I+  ARN  +E A     ++P  D  S+N +I G  Q  D
Sbjct: 215 DAWVLFDAMPERNVVSWNAMISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKD 274

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           ++ A  +   MP  N  +W +++ GY+   +   AL LF  M  + +  ++ TF   L  
Sbjct: 275 LKSARQLFDEMPKRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDA 334

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            + L+AL  G  +H  + K        V S L+++Y+KCG++ +A ++F     K+L++W
Sbjct: 335 CSNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLISW 394

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           N +I  YA +G   + + L++ ++     +P+  T++ +L+ACSH  +  D+  + FESM
Sbjct: 395 NGIIAAYAHHGFGIEAMHLYKNMQE-NGYKPNDATYVGLLSACSHAGL-VDEGLKIFESM 452

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG-SYGVVWRALLSASGACSDLD 455
            KD  I    EH   ++ L  + G +  A+R+I       +   VW ALL    +  +  
Sbjct: 453 VKDNSIVVRDEHYTCLVDLCSRAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNES 512

Query: 456 VARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
           +  ++A  +++ E D+   Y +LCN+Y S G W  A+ +R+ M  RGL+K+ GCSWIEV 
Sbjct: 513 IGDLAAKHLLEAEPDNAGTYTLLCNIYASAGKWKEAAEIRSEMNVRGLKKQPGCSWIEVA 572

Query: 516 N 516
           N
Sbjct: 573 N 573



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 130/291 (44%), Gaps = 70/291 (24%)

Query: 153 GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR----------------- 195
           G V DA  +F  M D+D++SW +++AA AR G L+ A     R                 
Sbjct: 55  GRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDRPDARRNVVTWTALLSGY 114

Query: 196 ---------------LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
                          +   + +S+N ++      G +EDA  + + MP  ++ SWN +L 
Sbjct: 115 ARARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPVRDAGSWNILLC 174

Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
           G V    +  A  +F  M  +DV     +++TM+SG+A   ++    ++   + ++    
Sbjct: 175 GLVRSGSLERARKMFERMPVRDV----MSWTTMISGLARNGSVDDAWVLFDAMPER---- 226

Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
           ++V  +A++  Y++  ++E A  +F  +  +++ +WN MITG+ +N DL    +LF+++ 
Sbjct: 227 NVVSWNAMISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMP 286

Query: 361 T------------------------------VRDLQPDSVTFLNVLAACSH 381
                                          V+ +QP+ VTFL  L ACS+
Sbjct: 287 KRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSN 337



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 12/236 (5%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN+      L A S+L      QQ+H  I K+    + FV + LM  Y K   +  A  +
Sbjct: 323 PNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARNV 382

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +  ++SWN +I+ Y   G   +A++L+  ++ +    +  ++   L+AC   G +
Sbjct: 383 FDFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNMQENGYKPNDATYVGLLSACSHAGLV 442

Query: 121 QLGMAIHSKIVKYSLERGVVIAN----CLIDMYGKCGSVEDAIGVFGEMIDKDIIS--WN 174
             G+ I   +VK   +  +V+ +    CL+D+  + G +EDA  +      K   S  W+
Sbjct: 443 DEGLKIFESMVK---DNSIVVRDEHYTCLVDLCSRAGRLEDAKRLISWFKIKPTSSTVWS 499

Query: 175 SVIAASARNGNL---ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
           +++     +GN    +LA   L      +  +Y  + N  A  G  ++A  I S M
Sbjct: 500 ALLGGCNSHGNESIGDLAAKHLLEAEPDNAGTYTLLCNIYASAGKWKEAAEIRSEM 555



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 80/156 (51%), Gaps = 10/156 (6%)

Query: 211 IAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
           +A  G + DA  +   MP  +  SW +++  Y  R  + EA  LF      D   +  T+
Sbjct: 51  LAAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLF---DRPDARRNVVTW 107

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGL-DASIVVASALLDMYSKCGQVEIADSMFRSLC 329
           + +LSG A    +       +  + +G+ + ++V  + +L+ Y+  G+VE A ++F  + 
Sbjct: 108 TALLSGYARARRVD-----EAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMP 162

Query: 330 RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365
            ++  +WN ++ G  R+G L +  ++FE++  VRD+
Sbjct: 163 VRDAGSWNILLCGLVRSGSLERARKMFERMP-VRDV 197


>gi|242089043|ref|XP_002440354.1| hypothetical protein SORBIDRAFT_09g030130 [Sorghum bicolor]
 gi|241945639|gb|EES18784.1| hypothetical protein SORBIDRAFT_09g030130 [Sorghum bicolor]
          Length = 866

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 162/562 (28%), Positives = 268/562 (47%), Gaps = 48/562 (8%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSG----------FLSNVFVSTALMGFYRK 50
           P+ Y     L A    G     Q +H +  K+G          FL+ ++  +A +G  R+
Sbjct: 181 PDGYACARALHACGRAGAPREGQAVHAHAAKAGHVAAHPLVPGFLAGMYAESADVGAARR 240

Query: 51  INSLADAHKMFVEIP----------------------------QPSVVSWNSLISGYVQS 82
           +    DA  +   +                             +PS+ +WN+++SG  ++
Sbjct: 241 VLETEDAPPVAWNVVVACCARLGLVDDALDLAERMARSGRLELEPSLATWNAVLSGCARN 300

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G+ R+A  +   +    +  D+ S +S L +   LG L  GM  H   ++  LE  V   
Sbjct: 301 GRDREAFGVVRIMLDQGLQPDSSSMSSLLKSVASLGLLAHGMEAHGFFLRNQLEPDVYTG 360

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
              +DMY KCG +E A  VF  +  ++I +WNS++A  A  G  + A   +  +     +
Sbjct: 361 TAFVDMYAKCGHLEYAQKVFDTLELRNITTWNSLVAGYANAGQFDHALDLVEEMKRNRLD 420

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMP----SPNSSSWNSILTGYVNRNRVPEALHL 254
           PD  ++N +ING +  G    A+++L  +     +PN  SW S+++G  N     ++ + 
Sbjct: 421 PDVTTWNGLINGYSVNGKSSQAVLLLRQIKAIGLTPNVVSWTSLISGSCNNGDYEDSFYF 480

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F EMQ   V     T S +L   AGL+ L  G  +H   +++  D  +VV +AL+DMYSK
Sbjct: 481 FNEMQKDHVQPSVVTMSVLLRACAGLALLKKGKELHCFALRRAYDRDMVVGTALIDMYSK 540

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
            G +  A  +F  +   NLV+ NAM+TG A +G   + I LF  +     L+PDS+TF  
Sbjct: 541 SGNLASAQRIFERIQENNLVSSNAMLTGLAAHGQGHEAIALFHDMCN-SGLKPDSITFTA 599

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           +L AC   D+   +  EYF++M   YG+ PTVE+   M+ L+ + G +  A   I +  F
Sbjct: 600 LLTACRSMDL-VTEGWEYFDTMESRYGVTPTVENYACMVDLLARCGYLDEAMDFINKSPF 658

Query: 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494
            S   +W ALL+      +L +A  +A ++ KLE  +   Y+ + +LY     +D A  +
Sbjct: 659 KSVSSLWGALLTGCTLHGNLALAEAAARKLFKLEPYNSANYLQMVSLYEHEQMFDEAESL 718

Query: 495 RNFMRERGLRKEAGCSWIEVEN 516
           +  M+ R L    G SWI++E 
Sbjct: 719 KYAMKARALDTRPGWSWIQIEQ 740



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 164/361 (45%), Gaps = 38/361 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP-----------QPSVVSW 72
           QLH   +++G   +  V+ AL     ++   A A ++  E             +   V W
Sbjct: 92  QLHSLAVRAGHARDPRVACALADLLVRLGRGASARRLLEEATAVEEEGEDGDEEEDSVLW 151

Query: 73  NSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132
           N  ++   ++ ++  A+  F E+    +  D Y+   AL ACG+ G+ + G A+H+   K
Sbjct: 152 NKRVAMLAEAEEWGDAIAAFGEMRARGVAPDGYACARALHACGRAGAPREGQAVHAHAAK 211

Query: 133 YS-LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG 191
              +    ++   L  MY +   V  A  V  E  D   ++WN V+A  AR G ++ A  
Sbjct: 212 AGHVAAHPLVPGFLAGMYAESADVGAARRVL-ETEDAPPVAWNVVVACCARLGLVDDALD 270

Query: 192 FLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEA 251
              R+               A+ G +E           P+ ++WN++L+G     R  EA
Sbjct: 271 LAERM---------------ARSGRLE---------LEPSLATWNAVLSGCARNGRDREA 306

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
             +   M  + +  D  + S++L  +A L  L  GM  H   ++  L+  +   +A +DM
Sbjct: 307 FGVVRIMLDQGLQPDSSSMSSLLKSVASLGLLAHGMEAHGFFLRNQLEPDVYTGTAFVDM 366

Query: 312 YSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371
           Y+KCG +E A  +F +L  +N+ TWN+++ GYA  G     ++L E++K  R L PD  T
Sbjct: 367 YAKCGHLEYAQKVFDTLELRNITTWNSLVAGYANAGQFDHALDLVEEMKRNR-LDPDVTT 425

Query: 372 F 372
           +
Sbjct: 426 W 426


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 150/507 (29%), Positives = 255/507 (50%), Gaps = 32/507 (6%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           N+     L+  Y K   + +A K+F  +P+ +VVSW +L+ GYV +GK   A +LF ++ 
Sbjct: 78  NIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMP 137

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHS------KIVKYSL--------------- 135
                 +  S+T  L    Q G +     ++        I + S+               
Sbjct: 138 EK----NKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEARE 193

Query: 136 ------ERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189
                 ER V+    ++  YG+   V+DA  +F  M +K  +SW S++    +NG +E A
Sbjct: 194 IFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDA 253

Query: 190 FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
                 +P    I+ N +I+G+ Q G+I  A  +  SM   N +SW +++  +       
Sbjct: 254 EELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFEL 313

Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309
           EAL LF  MQ + V     T  ++LS  A L++L  G  +H+ +++   D  + VAS L+
Sbjct: 314 EALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLM 373

Query: 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
            MY KCG++  +  +F     K+++ WN++I+GYA +G   + +++F ++      +P+ 
Sbjct: 374 TMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNE 433

Query: 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429
           VTF+  L+ACS+  +  ++  + +ESM   +G+KP   H   M+ ++G+ G    A  MI
Sbjct: 434 VTFVATLSACSYAGM-VEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMI 492

Query: 430 RELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD 489
             +       VW +LL A    S LDVA   A ++I++E ++   Y++L N+Y S G W 
Sbjct: 493 DSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWA 552

Query: 490 VASVMRNFMRERGLRKEAGCSWIEVEN 516
             + +R  M+ R +RK  GCSW EVEN
Sbjct: 553 DVAELRKLMKTRLVRKSPGCSWTEVEN 579



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 146/315 (46%), Gaps = 47/315 (14%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           +I  + +A K+F      S+ SWNS+++GY  +   R A  LF E+              
Sbjct: 29  RIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMP------------- 75

Query: 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKD 169
                                     +R ++  N L+  Y K G +++A  VF  M +++
Sbjct: 76  --------------------------DRNIISWNGLVSGYMKNGEIDEARKVFDLMPERN 109

Query: 170 IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           ++SW +++     NG +++A     ++P  + +S+  ++ G  Q G I+DA  +   +P 
Sbjct: 110 VVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPD 169

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            ++ +  S++ G     RV EA  +F EM  + V     T++TM++G    + +     I
Sbjct: 170 KDNIARTSMIHGLCKEGRVDEAREIFDEMSERSV----ITWTTMVTGYGQNNRVDDARKI 225

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
              + ++    + V  +++L  Y + G++E A+ +F  +  K ++  NAMI+G  + G++
Sbjct: 226 FDVMPEK----TEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEI 281

Query: 350 TKVIELFEQLKTVRD 364
            K   +F+ +K   D
Sbjct: 282 AKARRVFDSMKERND 296



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 94/192 (48%), Gaps = 3/192 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P    L  +L   + L    + +Q+H  +++  F  +V+V++ LM  Y K   L  +  +
Sbjct: 329 PTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLI 388

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERS-EIYADAYSFTSALAACGQLGS 119
           F   P   ++ WNS+ISGY   G   +AL +F E+  S     +  +F + L+AC   G 
Sbjct: 389 FDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGM 448

Query: 120 LQLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVI 177
           ++ G+ I+  +   + ++       C++DM G+ G   +A+ +   M ++ D   W S++
Sbjct: 449 VEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLL 508

Query: 178 AASARNGNLELA 189
            A   +  L++A
Sbjct: 509 GACRTHSQLDVA 520


>gi|297796091|ref|XP_002865930.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311765|gb|EFH42189.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 878

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 150/555 (27%), Positives = 279/555 (50%), Gaps = 43/555 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+    LL ASS LG + + + +H  I+  G   NV + T+L+ FY   + + DA ++
Sbjct: 222 PNEFTFVKLLGASSFLGLE-FGKTIHSSIIVRGIPLNVVLKTSLVYFYSHFSIMEDAVRV 280

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
                +  V  W S++SG+V++ + ++A+  F+E+    ++ + +++++ L+ C  + SL
Sbjct: 281 LNSTGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLHPNNFTYSAILSLCSAVRSL 340

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE-DAIGVFGEMIDKDIISWNSVIAA 179
            LG  IHS+ +K   E    + N L+ MY KC + E +A  VFG MI  +++SW ++I  
Sbjct: 341 DLGKQIHSQTIKVGFEDSTDVGNALVSMYMKCSASEVEASRVFGAMISPNVVSWTTLILG 400

Query: 180 SARNGNLELAFGFLHRL------PNPDTISY----------------------------- 204
              +G  +  FG L  +      PN  T+S                              
Sbjct: 401 LVDHGFEQDCFGLLMEMVKREVEPNFVTLSGVLRACSKLKYLRLVLEIHGYLLRRHVDGE 460

Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
               N +++  A  G ++ A  +  SM   ++ ++ S++T +    +   AL +   M  
Sbjct: 461 MIVGNSLVDAYASSGKVDYAWNVTRSMDMRDNITYTSLVTRFNELGKHEMALSVINHMYG 520

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
             + MD+ +    +S  A L A   G  +H   +K G   ++ V ++L+DMYSKCG +E 
Sbjct: 521 DGIRMDQLSLPGFISASANLGAHETGKHLHCYSVKSGFSGAVSVLNSLVDMYSKCGSLED 580

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A  +F  +   ++V+WN +++G A  G ++  +  FE+++ ++  +PDSVTFL +L+ACS
Sbjct: 581 AKKVFEEIAMPDVVSWNGLVSGLASIGRISSALSAFEEMR-MKGTEPDSVTFLILLSACS 639

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
              +  +   EYF+SM   + ++P +EH   ++ ++G+ G +  A  ++  +      ++
Sbjct: 640 KGRLT-EMGLEYFQSMKTIHNMEPQIEHYVHLVGILGRAGRLEEATGVVETMHLKPNAMI 698

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
           ++ LL A     +L +    A + + L       Y++L +LY   G  ++A   RN M E
Sbjct: 699 FKTLLRACRYHGNLSLGEDMANKGLALAPSDPAFYILLADLYDESGKPELAQKTRNLMSE 758

Query: 501 RGLRKEAGCSWIEVE 515
           +GL K+   S +EV+
Sbjct: 759 KGLCKKLSKSTVEVQ 773



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 198/396 (50%), Gaps = 40/396 (10%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
            +HC ++K G L N+ +   L+  Y K + + +A K+F E+PQ +V +W  +IS + +S 
Sbjct: 43  HIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMPQRTVFAWTVMISAFTKSQ 102

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
           ++  AL+LF E+  S I+ + ++F+S + +C  LG L  G  +H  ++K   E   V+ +
Sbjct: 103 EFASALSLFEEMMASGIHPNEFTFSSVIRSCAGLGDLSYGGRVHGSVLKTGFEGNSVVGS 162

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL------P 197
            L D+Y KCG +++A  +F  + + D ISW  +I++         A  F   +      P
Sbjct: 163 SLTDLYSKCGKLKEARELFSSLQNADTISWTMMISSLVGARKWSEALRFYSEMIKAGVPP 222

Query: 198 NP------------------DTISYNEVINGI--------------AQFGDIEDAIMILS 225
           N                    TI  + ++ GI              + F  +EDA+ +L+
Sbjct: 223 NEFTFVKLLGASSFLGLEFGKTIHSSIIVRGIPLNVVLKTSLVYFYSHFSIMEDAVRVLN 282

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           S    +   W S+++G+V   R  EA+  F EM+S  +  + +T+S +LS  + + +L  
Sbjct: 283 STGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLHPNNFTYSAILSLCSAVRSLDL 342

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI-ADSMFRSLCRKNLVTWNAMITGYA 344
           G  IHS  IK G + S  V +AL+ MY KC   E+ A  +F ++   N+V+W  +I G  
Sbjct: 343 GKQIHSQTIKVGFEDSTDVGNALVSMYMKCSASEVEASRVFGAMISPNVVSWTTLILGLV 402

Query: 345 RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
            +G       L  ++   R+++P+ VT   VL ACS
Sbjct: 403 DHGFEQDCFGLLMEM-VKREVEPNFVTLSGVLRACS 437



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 110/509 (21%), Positives = 234/509 (45%), Gaps = 46/509 (9%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+    ++R+ + LG  +Y  ++H  +LK+GF  N  V ++L   Y K   L +A ++
Sbjct: 121 PNEFTFSSVIRSCAGLGDLSYGGRVHGSVLKTGFEGNSVVGSSLTDLYSKCGKLKEAREL 180

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +     +SW  +IS  V + K+ +AL  + E+ ++ +  + ++F   L A   LG L
Sbjct: 181 FSSLQNADTISWTMMISSLVGARKWSEALRFYSEMIKAGVPPNEFTFVKLLGASSFLG-L 239

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           + G  IHS I+   +   VV+   L+  Y     +EDA+ V     ++D+  W SV++  
Sbjct: 240 EFGKTIHSSIIVRGIPLNVVLKTSLVYFYSHFSIMEDAVRVLNSTGEQDVFLWTSVVSGF 299

Query: 181 ARNGNLELAFGFLHRLP----NPDTISYNEVIN---------------------GIAQFG 215
            RN   + A G    +     +P+  +Y+ +++                     G     
Sbjct: 300 VRNLRAKEAVGTFLEMRSLGLHPNNFTYSAILSLCSAVRSLDLGKQIHSQTIKVGFEDST 359

Query: 216 DIEDAIM---------------ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
           D+ +A++               +  +M SPN  SW +++ G V+     +   L  EM  
Sbjct: 360 DVGNALVSMYMKCSASEVEASRVFGAMISPNVVSWTTLILGLVDHGFEQDCFGLLMEMVK 419

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           ++V  +  T S +L   + L  L   + IH  ++++ +D  ++V ++L+D Y+  G+V+ 
Sbjct: 420 REVEPNFVTLSGVLRACSKLKYLRLVLEIHGYLLRRHVDGEMIVGNSLVDAYASSGKVDY 479

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A ++ RS+  ++ +T+ +++T +   G     + +   +     ++ D ++    ++A +
Sbjct: 480 AWNVTRSMDMRDNITYTSLVTRFNELGKHEMALSVINHMYG-DGIRMDQLSLPGFISASA 538

Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
             ++   +  ++    +   G    V    S++ +  + G +  A+++  E+      V 
Sbjct: 539 --NLGAHETGKHLHCYSVKSGFSGAVSVLNSLVDMYSKCGSLEDAKKVFEEIAMPDV-VS 595

Query: 441 WRALLSASGACSDLDVARISAAEVIKLEG 469
           W  L+S   +   +  A +SA E ++++G
Sbjct: 596 WNGLVSGLASIGRISSA-LSAFEEMRMKG 623



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 142/301 (47%), Gaps = 41/301 (13%)

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           S ++G+ IH  ++K+ L   + + N L+ +Y K   + +A  +F EM  + + +W  +I+
Sbjct: 37  SSRIGLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMPQRTVFAWTVMIS 96

Query: 179 ASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGD------------------ 216
           A  ++     A      +     +P+  +++ VI   A  GD                  
Sbjct: 97  AFTKSQEFASALSLFEEMMASGIHPNEFTFSSVIRSCAGLGDLSYGGRVHGSVLKTGFEG 156

Query: 217 -----------------IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                            +++A  + SS+ + ++ SW  +++  V   +  EAL  + EM 
Sbjct: 157 NSVVGSSLTDLYSKCGKLKEARELFSSLQNADTISWTMMISSLVGARKWSEALRFYSEMI 216

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
              VP +E+TF  +L G +    L +G  IHS +I +G+  ++V+ ++L+  YS    +E
Sbjct: 217 KAGVPPNEFTFVKLL-GASSFLGLEFGKTIHSSIIVRGIPLNVVLKTSLVYFYSHFSIME 275

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +  S   +++  W ++++G+ RN    + +  F +++++  L P++ T+  +L+ C
Sbjct: 276 DAVRVLNSTGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSL-GLHPNNFTYSAILSLC 334

Query: 380 S 380
           S
Sbjct: 335 S 335



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 129/282 (45%), Gaps = 32/282 (11%)

Query: 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
           I +A  +   MP     +W  +++ +        AL LF EM +  +  +E+TFS+++  
Sbjct: 73  IWNARKLFDEMPQRTVFAWTVMISAFTKSQEFASALSLFEEMMASGIHPNEFTFSSVIRS 132

Query: 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTW 336
            AGL  L++G  +H  V+K G + + VV S+L D+YSKCG+++ A  +F SL   + ++W
Sbjct: 133 CAGLGDLSYGGRVHGSVLKTGFEGNSVVGSSLTDLYSKCGKLKEARELFSSLQNADTISW 192

Query: 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV---SEYF 393
             MI+        ++ +  + ++     + P+  TF+ +L A S   + F K    S   
Sbjct: 193 TMMISSLVGARKWSEALRFYSEMIKA-GVPPNEFTFVKLLGASSFLGLEFGKTIHSSIIV 251

Query: 394 ESMTKDYGIKPTVEHCCS-------MIRLMGQKGE----VW-----------RAQRMI-- 429
             +  +  +K ++ +  S        +R++   GE    +W           RA+  +  
Sbjct: 252 RGIPLNVVLKTSLVYFYSHFSIMEDAVRVLNSTGEQDVFLWTSVVSGFVRNLRAKEAVGT 311

Query: 430 ----RELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
               R LG       + A+LS   A   LD+ +   ++ IK+
Sbjct: 312 FLEMRSLGLHPNNFTYSAILSLCSAVRSLDLGKQIHSQTIKV 353


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 150/467 (32%), Positives = 248/467 (53%), Gaps = 36/467 (7%)

Query: 50  KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109
           K+  L+DA  +  + P   V+SW SLI+ Y ++ + ++A++ F  +    I  D  +   
Sbjct: 186 KMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIG 245

Query: 110 ALAACGQLGSLQLGMAIHSKIVK--YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167
            L+AC QL  L+LG ++HS + +   S+   +V+A  LIDMY KCG    A  VF     
Sbjct: 246 VLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVA--LIDMYAKCGDFGHAREVFD---- 299

Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227
                      A  R            R P     S+N +I+G  + G ++ A  +   M
Sbjct: 300 -----------AVGRG-----------RRPQ----SWNAIIDGYCKHGHVDVARSLFDQM 333

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
              +  ++NS++TGY++  ++ EAL LF  M+  D+ +D +T  ++LS  A L AL  G 
Sbjct: 334 EVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGR 393

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
            +H+C+  + ++  I + +ALLDMY KCG+V  A  +F+ + ++++  W AMI G A NG
Sbjct: 394 ALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNG 453

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407
                +E F Q++     QP+ V+++ VL ACSH+ +  ++   YF+ M   Y I P +E
Sbjct: 454 MGKAGLEYFYQMR-CDGFQPNPVSYIAVLTACSHSCL-LNEGRLYFDEMRILYNIHPQIE 511

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
           H   MI L+G+ G +  A  +++ +      V+W ++LSA      +D+A+ +A  ++K+
Sbjct: 512 HYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKI 571

Query: 468 EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           E D D VYV L N+      W+ AS +R  M ER ++K AG S + V
Sbjct: 572 EPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVTV 618



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 130/540 (24%), Positives = 245/540 (45%), Gaps = 49/540 (9%)

Query: 24   QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
            QLH  +L  G   N FV +AL+  Y  + S   +  +F E+P  +    N ++ G     
Sbjct: 814  QLHGRVLALGLCCNPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGLGNLK 873

Query: 84   KYRKALNLFVELERSEIYADAYSFTSALAACGQLGS-LQLGMAIHSKIVKYS-LERGVVI 141
               + +  F+++ R  +  +  S+  A+  C Q G  L+ G  +H  ++K   +   + +
Sbjct: 874  LTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFL 933

Query: 142  ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----P 197
            +N L+D+Y   G   D +    +++ +D+ISWNS+++  A  G+++ A  +L ++     
Sbjct: 934  SNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGK 993

Query: 198  NPDTISYNEVINGIAQFGD------------------------------------IEDAI 221
             P   S+  ++    + GD                                     + ++
Sbjct: 994  MPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSL 1053

Query: 222  MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
             I + +PS      NS++T  +  N    AL +   M  + V  D+ TFS  +  I+ LS
Sbjct: 1054 AIFNEIPSIALECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAIS-LS 1112

Query: 282  A---LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
            A   LT   ++HSC++K G +  + V S+L+  Y+  GQ+  +  +F  L   N++ + A
Sbjct: 1113 ASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTA 1172

Query: 339  MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
            +I+  AR GD  + +ELF+Q+ +   L+PD+VTFL  +A C    + F++     E M  
Sbjct: 1173 IISACARYGDGARAMELFDQMVS-SGLKPDNVTFLCAIAGCDQAGM-FEEGRLVIELMRA 1230

Query: 399  DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458
               + P   H   M+ L+ + G V  A  M+ +     Y   W +LL +  A  +  + +
Sbjct: 1231 SRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGK 1290

Query: 459  ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVA 518
             +A  +I +        + + N +   G+ + A  ++     + ++K +G S IEV + A
Sbjct: 1291 RAANMLIDVGRKDPATTLQVSNFFNDIGDRETALRIKEMTNVKEVKK-SGHSLIEVSHRA 1349



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 147/334 (44%), Gaps = 68/334 (20%)

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ--LGMAIHSKIVKYSLERGV 139
           SG       LF  + R+ +  D ++F   L  C      +  L   +H+  ++  L    
Sbjct: 84  SGDPDIPFVLFRRMRRAAVRPDGFTF-HFLFKCSSSSRPRALLCTMLHAACLRTMLPSAA 142

Query: 140 -VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN 198
             +AN LI MY + G   D    F E+  KD +SW                         
Sbjct: 143 PFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTM----------------------- 179

Query: 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
                   VI+G+A+ G + DA ++L+  P  +  SW S++  Y   +R  EA+  F  M
Sbjct: 180 --------VISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNM 231

Query: 259 QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC--- 315
            S+ +  D+ T   +LS  + L  L  G  +HS V ++G+  S  +  AL+DMY+KC   
Sbjct: 232 LSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDF 291

Query: 316 -----------------------------GQVEIADSMFRSLCRKNLVTWNAMITGYARN 346
                                        G V++A S+F  +  ++++T+N+MITGY  +
Sbjct: 292 GHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHS 351

Query: 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           G L + + LF  ++   DL+ D+ T +++L+AC+
Sbjct: 352 GQLREALLLFMNMRR-HDLRVDNFTVVSLLSACA 384



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 13/213 (6%)

Query: 20   TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79
            T CQ LH  ++K GF  ++ V ++L+  Y     L+ +H +F  +  P+V+ + ++IS  
Sbjct: 1118 TSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISAC 1177

Query: 80   VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG-MAIHSKIVKYSLERG 138
             + G   +A+ LF ++  S +  D  +F  A+A C Q G  + G + I        L+  
Sbjct: 1178 ARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPD 1237

Query: 139  VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII-----SWNSVIAASARNGNLEL---AF 190
                 C++++  + G V++A+    EM+++  +     +W+S++ +   +G   L   A 
Sbjct: 1238 ERHFACMVNLLSRDGFVKEAM----EMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAA 1293

Query: 191  GFLHRLPNPDTISYNEVINGIAQFGDIEDAIMI 223
              L  +   D  +  +V N     GD E A+ I
Sbjct: 1294 NMLIDVGRKDPATTLQVSNFFNDIGDRETALRI 1326



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 91/190 (47%), Gaps = 2/190 (1%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           + + +  LL A + LG     + LH  I      +++++ TAL+  Y K   + +A  +F
Sbjct: 372 DNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVF 431

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             + +  V +W ++I+G   +G  +  L  F ++       +  S+ + L AC     L 
Sbjct: 432 QRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLN 491

Query: 122 LGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
            G     ++ + Y++   +    C+ID+ G+ G +++A+ +   M +  + + W S+++A
Sbjct: 492 EGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSA 551

Query: 180 SARNGNLELA 189
              +  ++LA
Sbjct: 552 CRVHKRIDLA 561



 Score = 39.7 bits (91), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 7/131 (5%)

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
           +M   + +S N ++TG++       A  ++  M +  +    +TFST+L    G+ +   
Sbjct: 756 TMAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTIL----GVCSTYE 811

Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
            + +H  V+  GL  +  V SAL++ Y        + S+FR L  +N    N ++ G   
Sbjct: 812 ALQLHGRVLALGLCCNPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGL-- 869

Query: 346 NGDLTKVIELF 356
            G+L    EL 
Sbjct: 870 -GNLKLTEELI 879


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 160/589 (27%), Positives = 282/589 (47%), Gaps = 81/589 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  ++L +L+ A +     TY ++    +       N++    L+  Y K+  L +  ++
Sbjct: 42  PEIFLLNNLVSAYAKFDRITYARR----VFDQMPQRNLYSWNTLLSSYSKLACLPEMERV 97

Query: 61  FVEIPQPSVVSWNSLISGYVQSG---KYRKALNLFVELERSEIYADAYSFTSALAACGQL 117
           F  +P   +VSWNSLIS Y   G   +  KA NL   L       +  + ++ L    + 
Sbjct: 98  FHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLM--LYNGPFNLNRIALSTMLILASKQ 155

Query: 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGK-------------------------- 151
           G + LG+ +H  +VK+  +  V + + L+DMY K                          
Sbjct: 156 GCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLI 215

Query: 152 -----CGSVEDAIGVFGEMIDKDIISWNSVIAASARNG---------------NLEL--- 188
                C  +ED+  +F +M +KD ISW ++IA   +NG               NLE+   
Sbjct: 216 AGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQY 275

Query: 189 AFG--------------------FLHRLPNPDTISY-NEVINGIAQFGDIEDAIMILSSM 227
            FG                    ++ R    D I   + +++   +   I+ A  +   M
Sbjct: 276 TFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKM 335

Query: 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
              N  SW ++L GY       EA+ +F +MQ+  +  D++T  +++S  A L++L  G 
Sbjct: 336 NCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGA 395

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
             H   +  GL + I V++AL+ +Y KCG +E +  +F  +   + V+W A+++GYA+ G
Sbjct: 396 QFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFG 455

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407
              + + LFE +      +PD VTF+ VL+ACS   +   K ++ FESM K++ I P  +
Sbjct: 456 KANETLRLFESM-LAHGFKPDKVTFIGVLSACSRAGL-VQKGNQIFESMIKEHRIIPIED 513

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
           H   MI L  + G +  A++ I ++ F    + W +LLS+     ++++ + +A  ++KL
Sbjct: 514 HYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKL 573

Query: 468 EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
           E  +   Y++L ++Y + G W+  + +R  MR++GLRKE GCSWI+ +N
Sbjct: 574 EPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKN 622


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 150/523 (28%), Positives = 262/523 (50%), Gaps = 16/523 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P E     L+  S  +       Q+H  I+     S+  ++T L+       S+  +  +
Sbjct: 79  PTEAHFISLIHGSKTI---LQLHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAV 135

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F      ++ ++N+LI G   +  +  A+  F  + RS I  D  ++   L +   L S 
Sbjct: 136 FNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFST 195

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-----DIISWNS 175
           +LGMAIH  I++  +E    +   L+DMY K   +  A  VF E  ++       + WN 
Sbjct: 196 ELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNV 255

Query: 176 VIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSW 235
           +I    + G+++ A      +P  + +S++ +I+G A+ GD++ A+ +   MP  N  SW
Sbjct: 256 LIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSW 315

Query: 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295
            +++ G+       +AL +F +M  + V  + +T  + LS  A +  L  G+ IH  +  
Sbjct: 316 TTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKD 375

Query: 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL 355
            GL  +  + +AL+DMY+KCG +E A  +F    +K++ TW  MI G+A +G   + I  
Sbjct: 376 NGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIAC 435

Query: 356 FEQLKTVRDLQPDSVTFLNVLAACSHT---DIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412
           F+Q+     ++PD V FL +L AC H+   DI  +    +F+SM  DY I+P+++H   +
Sbjct: 436 FKQM-MFAGIKPDEVVFLALLTACMHSGQVDIGLN----FFDSMRLDYCIEPSMKHYTLI 490

Query: 413 IRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472
           + ++G+ G++  A R I  +      V+W AL  A  A     +A+ +  +++KLE    
Sbjct: 491 VDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHT 550

Query: 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
             Y+ L N Y + G W+ A  +R  M+ RG+ K +G S IEVE
Sbjct: 551 GNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVE 593



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 116/254 (45%), Gaps = 9/254 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN + +   L A + +G      ++H YI  +G      + TAL+  Y K  ++  A ++
Sbjct: 345 PNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEV 404

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E  Q S+ +W  +I G+   G   +A+  F ++  + I  D   F + L AC   G +
Sbjct: 405 FGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQV 464

Query: 121 QLGMAIHSKI-VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
            +G+     + + Y +E  +     ++DM G+ G +++A+     M ++ D + W ++  
Sbjct: 465 DIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFC 524

Query: 179 ---ASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDA---IMILSSMPSPNS 232
              A  +    + A   L +L    T +Y  + N  A  G  EDA    +++ +     +
Sbjct: 525 ACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKN 584

Query: 233 SSWNSI-LTGYVNR 245
           S W+ I + G V+R
Sbjct: 585 SGWSCIEVEGQVHR 598


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 159/568 (27%), Positives = 282/568 (49%), Gaps = 59/568 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL-SNVFVSTALMGFYRKINSLAD--- 56
           PNEY    ++RA    G+      L  ++LK+G+  S+V V   L+  + K  SLAD   
Sbjct: 154 PNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLES 213

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA-DAYSFTSALAACG 115
           A K+F ++ + +VV+W  +I+   Q G   +A++LF+E+  S  Y  D ++ T  ++ C 
Sbjct: 214 ARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCA 273

Query: 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175
           ++  L LG  +HS +++  L   + +   L+DMY KCG V++A  VF  M + +++SW +
Sbjct: 274 EIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTA 333

Query: 176 VIAASARNG------------NLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMI 223
           ++    R G            N+ L  G       P+  +++ V+   A   D +    +
Sbjct: 334 LVNGYVRGGGGYEREAMRMFSNMLLQGGVA-----PNCFTFSGVLKACASLPDFDFGEQV 388

Query: 224 LSSMPSPNSSS----WNSILTGYVNRNRVPEALHLFGEMQSKDV---------------- 263
                    S+     N +++ Y    R+  A   F  +  K++                
Sbjct: 389 HGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNL 448

Query: 264 ---------------PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
                           +  +T++++LSG A +  +  G  IH+ V+K G    + V +AL
Sbjct: 449 NSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNAL 508

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           + MYSKCG  E A  +F  +   N++TW ++I G+A++G  +K +ELF  +     ++P+
Sbjct: 509 ISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLET-GVKPN 567

Query: 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRM 428
            VT++ VL+ACSH  +  D+  ++F SM  ++GI P +EH   M+ L+G+ G +  A   
Sbjct: 568 DVTYIAVLSACSHVGL-IDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEF 626

Query: 429 IRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW 488
           I  + F +  +VWR  L +     +  +   +A  +++ E      Y++L NLY + G W
Sbjct: 627 INSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEGRW 686

Query: 489 DVASVMRNFMRERGLRKEAGCSWIEVEN 516
           +  + +R  M+++ + KEAG SWIEVEN
Sbjct: 687 EDVAAIRKNMKQKQITKEAGSSWIEVEN 714



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 137/320 (42%), Gaps = 51/320 (15%)

Query: 111 LAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID--K 168
           L  C +  +  LG  +H K+   +L    ++ N LI +Y K      A  +F  M +  +
Sbjct: 59  LKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKR 118

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVI---------------NGIAQ 213
           D++S++S+I+  A N N   A     +L   D +  NE                  G+  
Sbjct: 119 DVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCL 178

Query: 214 FG-----------------------------DIEDAIMILSSMPSPNSSSWNSILTGYVN 244
           FG                             D+E A  +   M   N  +W  ++T    
Sbjct: 179 FGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQ 238

Query: 245 RNRVPEALHLFGEM--QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302
                EA+ LF EM   S  VP D +T + ++S  A +  L+ G  +HS VI+ GL   +
Sbjct: 239 YGYNDEAIDLFLEMLVSSGYVP-DRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDL 297

Query: 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD--LTKVIELFEQLK 360
            V  +L+DMY+KCG V+ A  +F  +   N+++W A++ GY R G     + + +F  + 
Sbjct: 298 CVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNML 357

Query: 361 TVRDLQPDSVTFLNVLAACS 380
               + P+  TF  VL AC+
Sbjct: 358 LQGGVAPNCFTFSGVLKACA 377


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 143/504 (28%), Positives = 255/504 (50%), Gaps = 45/504 (8%)

Query: 57  AHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE-LERSEIYADAYSFTSALAACG 115
           A+ +F    +  V++WNS++  +V S   R+AL  + E LERS    D ++F S L  C 
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175
            L   ++G  +H ++VKY L   + I   L++MY  CG ++ A  +F  M  ++ + W S
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 176 VIAASARNGNLELAFGFLHRLPNPDTISYNEV---------------------------- 207
           +I+   +N     A   L++    D  S +EV                            
Sbjct: 151 MISGYMKNHCPNEAL-LLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREM 209

Query: 208 ------------INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
                       +N  A+ GD++ A  +   +   +  +W++++ GYV  NR  EAL LF
Sbjct: 210 DMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLF 269

Query: 256 GEMQS-KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
            E+    ++  +E T   ++S  A L  L  G  +H  + +     S+ + ++L+DM+SK
Sbjct: 270 REVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSK 329

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG ++ A  +F S+  K+L++WN+M+ G+A +G   + +  F  ++T  DLQPD +TF+ 
Sbjct: 330 CGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTT-DLQPDEITFIG 388

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           VL ACSH  +  +    ++E +   YG++   EH   M+ L+ + G +  A+  IR +  
Sbjct: 389 VLTACSHAGLVQEGKKLFYE-IEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPL 447

Query: 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494
              G +W ++L A    ++L++   +A  ++KLE  +D VY++L N+Y     W+    +
Sbjct: 448 QPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKV 507

Query: 495 RNFMRERGLRKEAGCSWIEVENVA 518
           R  M E+G++K  GCS + ++N+A
Sbjct: 508 RELMNEKGIQKTPGCSSVVIDNIA 531



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 124/525 (23%), Positives = 227/525 (43%), Gaps = 95/525 (18%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    LL+  + L      + LH  ++K    S++++ T L+  Y     L  A  +
Sbjct: 77  PDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFL 136

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   + V W S+ISGY+++    +AL L+ ++E      D  +  + ++AC +L  L
Sbjct: 137 FERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDL 196

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN------ 174
            +GM +HS I +  ++   V+ + L++MY KCG ++ A  VF ++ DKD+ +W+      
Sbjct: 197 GVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGY 256

Query: 175 ------------------------------SVIAASARNGNLELA---FGFLHRLPNPDT 201
                                         +VI+A A+ G+LE       ++ R     +
Sbjct: 257 VKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHS 316

Query: 202 ISYNE-VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
           +S N  +I+  ++ GDI+ A  I  SM   +  SWNS++ G+       EAL  F  MQ+
Sbjct: 317 VSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQT 376

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
            D+  DE TF  +L+  +           H+ ++++G      + +    +Y    + E 
Sbjct: 377 TDLQPDEITFIGVLTACS-----------HAGLVQEGKKLFYEIEA----LYGVRLKSEH 421

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
              M   LCR  L+         A   +  +V+           LQPD   + ++L AC 
Sbjct: 422 YGCMVDLLCRAGLL---------AEAREFIRVMP----------LQPDGAIWGSMLGACR 462

Query: 381 -HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL------- 432
            + ++   + +  F  + K   ++PT +    ++  +  K ++W   + +REL       
Sbjct: 463 VYNNLELGEEAARF--LLK---LEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQ 517

Query: 433 ---GFGSYGVVWRALLSASGACSDLDVARIS-----AAEVIKLEG 469
              G  S  +   A    +G CS  ++A IS       E +KL G
Sbjct: 518 KTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAG 562



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 173/355 (48%), Gaps = 22/355 (6%)

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
           S    +A    +GSL +G A    +  ++ E  V+  N ++  +        A+  + EM
Sbjct: 12  SLNKLIAHVLSMGSLGVGYAY--SVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEM 69

Query: 166 IDK-----DIISWNSVIAASARNGNLELAFG-FLH-----RLPNPDTISYNEVINGIAQF 214
           +++     D  ++ S++   A    LE   G  LH      + + D      ++N  A  
Sbjct: 70  LERSRNVPDRFTFPSLLKGCALL--LEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAAC 127

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           GD++ A  +   M   N   W S+++GY+  +   EAL L+ +M+      DE T +T++
Sbjct: 128 GDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLV 187

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
           S  A L  L  GM +HS + +  +    V+ SAL++MY+KCG ++ A  +F  L  K++ 
Sbjct: 188 SACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVY 247

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT-DIPFDK-VSEY 392
            W+A+I GY +N   T+ ++LF ++    +++P+ VT L V++AC+   D+   + V +Y
Sbjct: 248 AWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDY 307

Query: 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
                K + +        S+I +  + G++  A+R+   + +    + W ++++ 
Sbjct: 308 ITRTQKGHSVSLN----NSLIDMFSKCGDIDAAKRIFDSMSYKDL-ISWNSMVNG 357


>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
 gi|219886289|gb|ACL53519.1| unknown [Zea mays]
          Length = 537

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 149/503 (29%), Positives = 255/503 (50%), Gaps = 15/503 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKIN---SLADAHKMFVEIPQPSVVSWNSLISGY 79
           +Q+H  ++  GFLS+      L+ F   +      A A  +F  IP P    +N+LI G 
Sbjct: 25  KQVHALMVLQGFLSDSSALRELI-FASAVGVRGGTAHARLVFDRIPHPDRFMYNTLIRGA 83

Query: 80  VQSGKYRKALNLFVELERSE-------IYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132
             S   R A++++  + R         +  D  +F   L AC  +G+ + G  +H+ +VK
Sbjct: 84  AHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVHAHVVK 143

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF 192
              E    + N LI M+   G +  A  +F     +D ++W+++I+  AR G++  A   
Sbjct: 144 AGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAAREL 203

Query: 193 LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEAL 252
               P  D +S+N +I   A+ GD+  A  +    P  +  SWN++++GYV      +A+
Sbjct: 204 FDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAM 263

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ--GLDASIVVASALLD 310
            LF +MQ+     D  T  ++LS  A    L  G  +H  +  +   +  +  + +AL+D
Sbjct: 264 ELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALID 323

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370
           MY+KCG +  A  +F  +  KN+ TWN++I G A +G  T+ I +F ++    +++PD +
Sbjct: 324 MYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKM-LQGNVKPDEI 382

Query: 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
           TF+ VLAACSH  +  DK  EYF  M + Y I+P ++H   M+ ++ + G +  A   I 
Sbjct: 383 TFVAVLAACSHGGM-VDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIG 441

Query: 431 ELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490
            +      V+WR LL A     ++++A  +  E++K   D+   +V+L N+Y S G W  
Sbjct: 442 TMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSDASGDFVLLSNIYASVGEWPG 501

Query: 491 ASVMRNFMRERGLRKEAGCSWIE 513
           +  MR  M + G+ KEAG + I+
Sbjct: 502 SENMRKLMDDSGVNKEAGRAVID 524



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 184/396 (46%), Gaps = 31/396 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++     +LRA + +G      Q+H +++K+G  S+ FV  AL+G +  +  L  A  +
Sbjct: 113 PDKRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAAL 172

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +   V+W+++ISG+ + G    A  LF E        D  S+   + A  +LG  
Sbjct: 173 FDGEAREDAVAWSAMISGFARRGDIGAARELFDE----SPVKDLVSWNVMITAYAKLGD- 227

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI----DKDIISWNSV 176
              MA   ++   + +R VV  N +I  Y +CGS + A+ +F +M       D ++  S+
Sbjct: 228 ---MAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSL 284

Query: 177 IAASARNGNLELA---FGFL----HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           ++A A +G+L+      GFL     R+  P T   N +I+  A+ G +  A+ +   M  
Sbjct: 285 LSACADSGDLDAGRRLHGFLSGRFSRI-GPTTALGNALIDMYAKCGSMTSALEVFWLMQD 343

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            N S+WNSI+ G        E++ +F +M   +V  DE TF  +L+  +    +  G   
Sbjct: 344 KNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEY 403

Query: 290 HSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNG 347
            S + ++  ++ +I     ++DM S+ G ++ A     ++    N V W  ++     +G
Sbjct: 404 FSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHG 463

Query: 348 DLTKVIELFEQ-----LKTVRDLQPDSVTFLNVLAA 378
           +    IEL E      LK   D   D V   N+ A+
Sbjct: 464 E----IELAEHANRELLKARSDASGDFVLLSNIYAS 495


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 153/501 (30%), Positives = 255/501 (50%), Gaps = 18/501 (3%)

Query: 29  ILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP------SVVSWNSLISGYVQS 82
           +L     S    +  L+  Y   ++L  AH + +E   P      + V +N LI     S
Sbjct: 41  LLHPSHPSAAHANVKLIQAYAACSALPLAHTV-LESSSPDGRSRTTTVCFNVLIRALTAS 99

Query: 83  GKYRKALNLFVELER--SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
             +R AL LF  +       + D Y++  AL +C     L LG+ IHS + K  L+R V 
Sbjct: 100 SLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVY 159

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR----- 195
           +A+  I MY +CG  EDA  VF  M  +D++SWN++IA  AR G  + A     +     
Sbjct: 160 VAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQ 219

Query: 196 --LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
             +P+  T++      G A+  DI     +  +M      SWN++L  Y N     +A+ 
Sbjct: 220 GSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVE 279

Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
           LF  M+  +V  D  T +T+L     LSA + G  IH  + ++ +  ++++ +AL+DMY+
Sbjct: 280 LFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYA 339

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
            CG ++ A  +F  +  +++++W ++I+ Y ++G   + ++LFE++   + L+PDS+ F+
Sbjct: 340 SCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLG-QGLEPDSIAFV 398

Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
            VLAACSH  +  D    YF+SMT  Y I P  EH   M+ L+G+ G +  A   I  + 
Sbjct: 399 AVLAACSHAGLLADG-KHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTML 457

Query: 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
                 VW ALL A    S++D+  ++A  +  L  +    YV+L N+Y   G W   + 
Sbjct: 458 IEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTS 517

Query: 494 MRNFMRERGLRKEAGCSWIEV 514
           +R+ M  +G++K  G S +E+
Sbjct: 518 VRSVMVNKGIKKFPGTSIVEL 538



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 148/316 (46%), Gaps = 32/316 (10%)

Query: 59  KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
           ++F  +    ++SWN++++ Y  +  + KA+ LF+ +E+ E+  D+ +  + L  CG+L 
Sbjct: 248 RVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELS 307

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           +  +G  IH  I + ++   +++ N L+DMY  CG ++DA  +F  M  +D+ISW S+I+
Sbjct: 308 AFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIIS 367

Query: 179 ASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSS 234
           A  ++G+   A     ++      PD+I++  V+   +  G + D      SM S     
Sbjct: 368 AYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTS----- 422

Query: 235 WNSILTGYVNRNRVPEALH------LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
                      + +P+A H      L G     +   + Y F T +  +   +   WG L
Sbjct: 423 ---------RYHIIPKAEHYTCMVDLLGRAGCIN---EAYDFITTM--LIEPNERVWGAL 468

Query: 289 IHSCVIKQGLDASIVVASALLDMYS-KCGQVEIADSMFRSLCRKNLVT--WNAMITGYAR 345
           + +C I   +D  +V A  L  +   + G   +  +M+    R   VT   + M+    +
Sbjct: 469 LQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIK 528

Query: 346 NGDLTKVIELFEQLKT 361
               T ++EL +Q+ T
Sbjct: 529 KFPGTSIVELGDQVHT 544



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 2/192 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L    +L   +  +++H  I +     N+ +  ALM  Y     L DA ++
Sbjct: 291 PDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREI 350

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +    V+SW S+IS Y + G  R+A++LF ++    +  D+ +F + LAAC   G L
Sbjct: 351 FDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLL 410

Query: 121 QLGMA-IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G     S   +Y +        C++D+ G+ G + +A      M I+ +   W +++ 
Sbjct: 411 ADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQ 470

Query: 179 ASARNGNLELAF 190
           A   + N+++  
Sbjct: 471 ACRIHSNMDIGL 482



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 125/273 (45%), Gaps = 19/273 (6%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H  + K     NV+V+ + +  Y +     DA+++F  +P   VVSWN++I+G+ + G
Sbjct: 144 QIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVG 203

Query: 84  KYRKALNL---FVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
            + +A+ +   FV L+ S    DA +    L A G      +      ++      + ++
Sbjct: 204 LFDRAIEVFKQFVVLQGS--MPDAGTMAGILPAMGNAKPDDIRFV--RRVFDNMQFKELI 259

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL-AFGFLHRLPN- 198
             N ++ +Y        A+ +F  +++KD +  +S+  A+      EL AF    R+   
Sbjct: 260 SWNAMLAVYANNEFHVKAVELF-MLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEI 318

Query: 199 -------PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEA 251
                  P+ +  N +++  A  G ++DA  I   M + +  SW SI++ Y       EA
Sbjct: 319 IKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREA 378

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGI--AGLSA 282
           + LF +M  + +  D   F  +L+    AGL A
Sbjct: 379 VDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLA 411


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 153/502 (30%), Positives = 262/502 (52%), Gaps = 27/502 (5%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKIN----SLADAHKMFVEIPQPSVVSWNSLISGY 79
           Q+H   +KSG + +   +  ++ F    +     L  AHK+F ++PQ +  SWN++I G+
Sbjct: 34  QIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGF 93

Query: 80  VQSGKYRK--ALNLFVELERSE-IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE 136
            +S + +   A+ LF E+   E I  + ++F S L AC + G +Q G  IH   +KY   
Sbjct: 94  SESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFG 153

Query: 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196
               + + L+ MY  CG ++DA  +F     K+II    V+    R  + E+        
Sbjct: 154 GDEFVMSNLVRMYVICGLMKDACVLFY----KNIIEREMVMMIDRRKRDGEVVL------ 203

Query: 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256
                  +N +I+G  + GD + A M+   M   +  SWN++++GY       +A+ +F 
Sbjct: 204 -------WNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFR 256

Query: 257 EMQS-KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
           EM+  +D+  +  T  ++L  ++ L +L  G  +H      G+    V+ SAL+DMYSKC
Sbjct: 257 EMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKC 316

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G +E A  +F  L R+N++TW+AMI G+A +G     I+ F +++    ++P  V ++N+
Sbjct: 317 GIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQA-GVRPSDVAYINL 375

Query: 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435
           L ACSH  +  ++   YF  M    G++P +EH   M+ L+G+ G +  A+  I  +   
Sbjct: 376 LTACSHAGL-VEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIK 434

Query: 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495
              V+W+ALL A     ++++ +  A  ++ +       YV L N+Y S GNW   S MR
Sbjct: 435 PDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMR 494

Query: 496 NFMRERGLRKEAGCSWIEVENV 517
             M+E  +RK+ GCSWI+++ V
Sbjct: 495 LRMKEMDIRKDPGCSWIDIDGV 516



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 155/366 (42%), Gaps = 73/366 (19%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMG-------------- 46
           PN +    +L+A +  G     +Q+H   LK GF  + FV + L+               
Sbjct: 119 PNRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVL 178

Query: 47  FYRKI---------------------NSLAD----------AHKMFVEIPQPSVVSWNSL 75
           FY+ I                     N + D          A  +F ++ Q SVVSWN++
Sbjct: 179 FYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTM 238

Query: 76  ISGYVQSGKYRKALNLFVELERSE-IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS 134
           ISGY Q+G ++ A+ +F E+++ E I  +  +  S L A  +LGSL+LG  +H       
Sbjct: 239 ISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSG 298

Query: 135 LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH 194
           +    V+ + LIDMY KCG +E AI VF  +  +++I+W+++I   A +G    A     
Sbjct: 299 IRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFC 358

Query: 195 RLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PNSSSWNSILTGYVNR 245
           ++      P  ++Y  ++   +  G +E+     S M S     P    +  ++      
Sbjct: 359 KMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRL 418

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
             + EA      M  K  P D                + W  L+ +C + + ++    VA
Sbjct: 419 GLLDEAEEFILNMPIK--PDD----------------VIWKALLGACRMHRNVEMGKRVA 460

Query: 306 SALLDM 311
           + L+DM
Sbjct: 461 NILMDM 466


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 154/549 (28%), Positives = 273/549 (49%), Gaps = 64/549 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRK---------- 50
           P+++ L ++L + +        +++H +I+K G   NV VS +L+  Y K          
Sbjct: 144 PSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVV 203

Query: 51  ---------------------INSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKAL 89
                                +  +  A   F ++ +  +V+WNS+ISGY Q G   +AL
Sbjct: 204 FDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRAL 263

Query: 90  NLFVELER-SEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148
           ++F ++ R S +  D ++  S L+AC  L  L +G  IHS IV    +   ++ N LI M
Sbjct: 264 DMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISM 323

Query: 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVI 208
           Y +CG VE A  +  +   KD+               +E                +  ++
Sbjct: 324 YSRCGGVETARRLIEQRGTKDL--------------KIE---------------GFTALL 354

Query: 209 NGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268
           +G  + GD+ +A  I  S+   +  +W +++ GY       EA++LF  M  ++   + Y
Sbjct: 355 DGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSY 414

Query: 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL 328
           T + MLS  + L++L  G  IH   +K G   S+ V++AL+ MY+K G +  A   F  +
Sbjct: 415 TLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLI 474

Query: 329 -CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387
            C ++ V+W +MI   A++G   + +ELFE +  +  L+PD +T++ V +AC+H  +  +
Sbjct: 475 RCERDTVSWTSMIIALAQHGHAEEALELFETM-LMEGLRPDHITYVGVFSACTHAGL-VN 532

Query: 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
           +  +YF+ M     I PT+ H   M+ L G+ G +  AQ  I ++      V W +LLSA
Sbjct: 533 QGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSA 592

Query: 448 SGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEA 507
                ++D+ +++A  ++ LE ++   Y  L NLY++ G W+ A+ +R  M++  ++KE 
Sbjct: 593 CRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQ 652

Query: 508 GCSWIEVEN 516
           G SWIEV++
Sbjct: 653 GFSWIEVKH 661



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 185/423 (43%), Gaps = 97/423 (22%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE------------------- 63
           Q +HC ++KSG + +V++   LM  Y K      A K+F E                   
Sbjct: 34  QLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKR 93

Query: 64  ------------IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSAL 111
                       +PQ   VSW ++I GY   G+Y KA+ +  E+ R  I    ++ T+ L
Sbjct: 94  GDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVL 153

Query: 112 AACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII 171
           A+      L+ G  +HS IVK  L   V ++N L++MY KCG    A  VF  M+ KDI 
Sbjct: 154 ASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDIS 213

Query: 172 SWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231
           SWN++IA   + G ++LA     ++   D +++N                          
Sbjct: 214 SWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWN-------------------------- 247

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIH 290
                S+++GY  R     AL +F +M +   +  D +T +++LS  A L  L  G  IH
Sbjct: 248 -----SMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIH 302

Query: 291 SCVIKQGLDASIVVASALLDMYSKCGQVEI------------------------------ 320
           S ++  G D S +V +AL+ MYS+CG VE                               
Sbjct: 303 SHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362

Query: 321 ---ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
              A ++F SL  +++V W AMI GY ++G   + I LF  +    + +P+S T   +L+
Sbjct: 363 MNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSM-VGEEQRPNSYTLAAMLS 421

Query: 378 ACS 380
             S
Sbjct: 422 VAS 424



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 168/365 (46%), Gaps = 65/365 (17%)

Query: 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN 185
           +H +++K  L   V + N L+++Y K G    A  +F EM  +   SWN+V++A A+ G+
Sbjct: 36  VHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGD 95

Query: 186 LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245
           ++ +  F  RLP  D++S+  +I G    G    AI I+                     
Sbjct: 96  MDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIM--------------------- 134

Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
                     GEM  + +   ++T + +L+ +A    L  G  +HS ++K GL  ++ V+
Sbjct: 135 ----------GEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVS 184

Query: 306 SALLDMYSKC-------------------------------GQVEIADSMFRSLCRKNLV 334
           ++LL+MY+KC                               GQ+++A + F  +  +++V
Sbjct: 185 NSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIV 244

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFE 394
           TWN+MI+GY + G   + +++F ++     L PD  T  +VL+AC++ +        +  
Sbjct: 245 TWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSH 304

Query: 395 SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV-WRALLSASGACSD 453
            +T  + I   V +  ++I +  + G V  A+R+I + G     +  + ALL       D
Sbjct: 305 IVTTGFDISGIVLN--ALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362

Query: 454 LDVAR 458
           ++ A+
Sbjct: 363 MNEAK 367


>gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 530

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 162/532 (30%), Positives = 270/532 (50%), Gaps = 49/532 (9%)

Query: 1   PNEYVLFHLLRAS------SDLGWDT--YCQQLHCYILKSGFLSNVFVSTALMGFYRKIN 52
           PNE  LF    A+        +  +T  + Q++H +I+K+GF+ N  VS  L+  Y K  
Sbjct: 32  PNEEYLFRSTAAALSSALQDHINSNTPFHGQKIHAHIVKTGFIPNTNVSIKLLILYLKCG 91

Query: 53  SLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALA 112
            L  A +MF E+PQ ++ ++N LI GY++ G  + ++NL   L       D ++++  L 
Sbjct: 92  CLKYARQMFDELPQRTLSAYNYLIGGYLKLGLVQDSMNLVRRLVLEGQRPDGFTYSMILK 151

Query: 113 ACGQLG----SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
           A         S  LG  +H +I+K  +E   V+   L+D Y K G V  A  VF  M++K
Sbjct: 152 ASTSGDNVTLSCNLGSVVHGQILKSEVEPDDVLYTALVDSYVKSGRVGYARKVFDMMMEK 211

Query: 169 DIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP 228
           ++I   S+I+            G+++R                   G +EDA  I     
Sbjct: 212 NVICSTSMIS------------GYMNR-------------------GSVEDAEEIFERTV 240

Query: 229 SPNSSSWNSILTGYVNRNRVPE-ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
             +   +N+++ GY    +  E AL ++ EMQ      +  TF++++   + L+    G 
Sbjct: 241 EKDVVVFNAMIEGYSKSVQTAEKALEVYVEMQRYGFRPNLSTFASVIGACSVLAGFEIGQ 300

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
            +   ++K+    ++   SAL+DMYSKCG++E A   F  +  KN+ +W++MI GY +NG
Sbjct: 301 QVQGQLLKREFFTNVKTGSALIDMYSKCGRIEDARRAFEQMPEKNVFSWSSMIDGYGKNG 360

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407
              + ++LF +++    ++P+ VTFL  L+AC H  +   K  E FESM ++Y +KP +E
Sbjct: 361 RPDEALQLFHKMQDC-CIEPNYVTFLGALSACGHAGL-VSKGREIFESMEREYSLKPGME 418

Query: 408 HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467
           H   M+ L+G+ G +  A   +  +       VW ALLSA     ++++A ++A E+ KL
Sbjct: 419 HYACMVDLLGRAGSLNLAWEFVMGMPEKPSSDVWAALLSACNLHGNVEMASVAANELFKL 478

Query: 468 --EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
             EG S   YV L N   + G WD  + +R  M+ RG+ K+ G SW+  E+V
Sbjct: 479 NAEGRSG-AYVALSNTLAAAGKWDGVTEVREIMKSRGILKDTGSSWVGTESV 529


>gi|302764714|ref|XP_002965778.1| hypothetical protein SELMODRAFT_83991 [Selaginella moellendorffii]
 gi|300166592|gb|EFJ33198.1| hypothetical protein SELMODRAFT_83991 [Selaginella moellendorffii]
          Length = 440

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/453 (30%), Positives = 234/453 (51%), Gaps = 40/453 (8%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL- 95
           NVF    ++  Y +   L +A ++F  +P+ +VV+WN++I+ +V SG+ ++AL+LF E+ 
Sbjct: 22  NVFSWNIIILAYTQNGHLQEARELFSRMPKKNVVTWNTMIAAFVHSGQSQEALDLFDEMG 81

Query: 96  -ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154
            E S+I     +   AL AC  LG+L+    IHS+I+K   E   +++  L +++ K G 
Sbjct: 82  EEPSKI-----TLIHALQACENLGALEKAQEIHSRIIKLGWESHTILSTALFNVFAKHGI 136

Query: 155 VEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQF 214
           +  A  +F +M                               P+ D + +N ++   A+ 
Sbjct: 137 MLQARAIFEKM-------------------------------PHRDVVCWNSMVAAYARR 165

Query: 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274
           G IE+A+ +  SM   N+SSWNSI+T YV      EA  LF  M  + V   + TF  +L
Sbjct: 166 GHIEEAMKLFLSMSVRNASSWNSIITAYVQSGHSKEAFGLFKAMDLEGVEATKITFLAVL 225

Query: 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334
               G ++L  G L+H+ ++  G    I  A+AL+ MY+KCG  E + ++F  +   N +
Sbjct: 226 GACTGTNSLAHGKLVHTLMVDAGFAVDITAATALITMYAKCGAPEASKAVFLQISHHNCI 285

Query: 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFE 394
           TW +++  YA NG     ++ F +L  +    P+ + F+NVL ACSH  +  +  + +F+
Sbjct: 286 TWASLVAAYAHNGRGKAAVDFF-RLMCLEAFTPNQIAFVNVLHACSHGGL-LECGTSFFQ 343

Query: 395 SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDL 454
           SM  DYG++P  EH   M+ ++G+ G    A+ +I E+ F   G+ W  LL+A     D+
Sbjct: 344 SMVGDYGLEPIFEHYACMVDVLGRSGRTDIAENLILEMPFEPDGLPWTVLLAACKIHHDV 403

Query: 455 DVARISAAEVIKLEGDSDYVYVMLCNLYTSHGN 487
                +A ++++L+      Y +L N Y+  GN
Sbjct: 404 KRGARAAEKIVELDPKRCAAYTLLANAYSGSGN 436



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 119/262 (45%), Gaps = 35/262 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  L H L+A  +LG     Q++H  I+K G+ S+  +STAL   + K   +  A  +
Sbjct: 84  PSKITLIHALQACENLGALEKAQEIHSRIIKLGWESHTILSTALFNVFAKHGIMLQARAI 143

Query: 61  FVEIPQPSVV-------------------------------SWNSLISGYVQSGKYRKAL 89
           F ++P   VV                               SWNS+I+ YVQSG  ++A 
Sbjct: 144 FEKMPHRDVVCWNSMVAAYARRGHIEEAMKLFLSMSVRNASSWNSIITAYVQSGHSKEAF 203

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
            LF  ++   + A   +F + L AC    SL  G  +H+ +V       +  A  LI MY
Sbjct: 204 GLFKAMDLEGVEATKITFLAVLGACTGTNSLAHGKLVHTLMVDAGFAVDITAATALITMY 263

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYN 205
            KCG+ E +  VF ++   + I+W S++AA A NG  + A  F   +      P+ I++ 
Sbjct: 264 AKCGAPEASKAVFLQISHHNCITWASLVAAYAHNGRGKAAVDFFRLMCLEAFTPNQIAFV 323

Query: 206 EVINGIAQFGDIEDAIMILSSM 227
            V++  +  G +E       SM
Sbjct: 324 NVLHACSHGGLLECGTSFFQSM 345



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 120/267 (44%), Gaps = 66/267 (24%)

Query: 148 MYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEV 207
           MYG CG  ++A+ VF  +   ++ SWN +I A  +NG+L+ A     R+P  + +++N  
Sbjct: 1   MYGACGQHQEALAVFQGLKSPNVFSWNIIILAYTQNGHLQEARELFSRMPKKNVVTWN-- 58

Query: 208 INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
                                        +++  +V+  +  EAL LF EM  +     +
Sbjct: 59  -----------------------------TMIAAFVHSGQSQEALDLFDEMGEEP---SK 86

Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
            T    L     L AL     IHS +IK G ++  ++++AL ++++K G +  A ++F  
Sbjct: 87  ITLIHALQACENLGALEKAQEIHSRIIKLGWESHTILSTALFNVFAKHGIMLQARAIFEK 146

Query: 328 LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD----------------------- 364
           +  +++V WN+M+  YAR G + + ++LF  + +VR+                       
Sbjct: 147 MPHRDVVCWNSMVAAYARRGHIEEAMKLFLSM-SVRNASSWNSIITAYVQSGHSKEAFGL 205

Query: 365 --------LQPDSVTFLNVLAACSHTD 383
                   ++   +TFL VL AC+ T+
Sbjct: 206 FKAMDLEGVEATKITFLAVLGACTGTN 232



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 79/157 (50%), Gaps = 2/157 (1%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H  ++ +GF  ++  +TAL+  Y K  +   +  +F++I   + ++W SL++ Y  +G+
Sbjct: 240 VHTLMVDAGFAVDITAATALITMYAKCGAPEASKAVFLQISHHNCITWASLVAAYAHNGR 299

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIV-KYSLERGVVIAN 143
            + A++ F  +       +  +F + L AC   G L+ G +    +V  Y LE       
Sbjct: 300 GKAAVDFFRLMCLEAFTPNQIAFVNVLHACSHGGLLECGTSFFQSMVGDYGLEPIFEHYA 359

Query: 144 CLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
           C++D+ G+ G  + A  +  EM  + D + W  ++AA
Sbjct: 360 CMVDVLGRSGRTDIAENLILEMPFEPDGLPWTVLLAA 396


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 143/442 (32%), Positives = 241/442 (54%), Gaps = 15/442 (3%)

Query: 75  LISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS 134
           +ISGY+++ K+  A +LF ++       D +S+   L    +   L+   A+  ++    
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPER----DLFSWNVMLTGYVRNRDLKTARALFERMP--- 53

Query: 135 LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLH 194
            ER +V  N ++  Y + G V++A  +F +M  K+ ISWN ++AA  +NG +E A     
Sbjct: 54  -ERDIVSWNAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFE 112

Query: 195 RLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
              +   +S+N ++ G      +     +  +MP  +S SW++++ GY       EALH 
Sbjct: 113 SKMDWTLVSWNCLMGGF-----VRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHF 167

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F EMQ     ++  +F+  LS  + ++AL  G  +H  ++K G      V +ALL MY K
Sbjct: 168 FVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCK 227

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG ++ A   F+ +  K++V+WN MI GYAR+G   + + +FE +KT   ++PD  T ++
Sbjct: 228 CGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTT-GIRPDDATMVS 286

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           VLAACSH  +  D+ SEYF SM +DYGI   + H   M+ L+G+ G++  AQ +++ + F
Sbjct: 287 VLAACSHAGL-VDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPF 345

Query: 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494
                 W ALL AS    + ++   +A  + ++E  +  +Y++L  LY + G W  A  M
Sbjct: 346 EPDAATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKM 405

Query: 495 RNFMRERGLRKEAGCSWIEVEN 516
           R  MR +G++K  G SW+EV+N
Sbjct: 406 RLEMRNKGVKKVPGYSWLEVQN 427



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 119/235 (50%), Gaps = 47/235 (20%)

Query: 46  GFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAY 105
           GF RK  +L D       +PQ   +SW+++I+GY Q+G   +AL+ FVE++R     +  
Sbjct: 128 GFVRKRRNLFD------NMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRS 181

Query: 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
           SFT AL+ C  + +L+LG  +H ++VK   + G  + N L+ MY KCGS+++A   F E+
Sbjct: 182 SFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEI 241

Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDT-------------------- 201
           ++KD++SWN++I   AR+G  E A      +      PD                     
Sbjct: 242 LEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGS 301

Query: 202 ----------------ISYNEVINGIAQFGDIEDAIMILSSMP-SPNSSSWNSIL 239
                           + Y  +++ + + G +E+A  ++ +MP  P++++W ++L
Sbjct: 302 EYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALL 356



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 2/169 (1%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLHC ++K+G+ +  +V  AL+  Y K  S+ +A   F EI +  VVSWN++I GY + 
Sbjct: 200 RQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARH 259

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA-IHSKIVKYSLERGVVI 141
           G   +AL +F  ++ + I  D  +  S LAAC   G +  G    +S    Y +   +V 
Sbjct: 260 GFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVH 319

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAASARNGNLELA 189
             C++D+ G+ G +E+A  +   M  + D  +W +++ AS  +GN EL 
Sbjct: 320 YTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELG 368


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/476 (31%), Positives = 245/476 (51%), Gaps = 43/476 (9%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD 103
           L G+ R +  LADA  +F  IP P  VS+N+L+S +  SG    A  LF  +        
Sbjct: 104 LAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMP------- 156

Query: 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
                                            R VV  N ++    K G+VE+A  VF 
Sbjct: 157 --------------------------------VRDVVSWNTMVSGLSKSGAVEEAKAVFL 184

Query: 164 EMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP-DTISYNEVINGIAQFGDIEDAIM 222
            M  ++ +SWN++++  A + ++  A  +    P   D + +  +++G    G++  AI 
Sbjct: 185 AMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIE 244

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLS 281
              +MP  N  SWN+++ GYV  +   +AL LF  M +  +V  +  T S++L G + LS
Sbjct: 245 YFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLS 304

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL +G  IH   +K  L  ++ V ++L+ MY KCG +  A  +F  +  +++V WNAMI+
Sbjct: 305 ALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMIS 364

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYA++GD  + I LFE++K    ++P+ +TF+ VL AC HT +  D     FE M + YG
Sbjct: 365 GYAQHGDGKEAINLFERMKD-EGVEPNWITFVAVLTACIHTGL-CDFGIRCFEGMQELYG 422

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I+P V+H   M+ L+ + G++ RA  +IR + F  +   +  LL+A     +L+ A ++A
Sbjct: 423 IEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAA 482

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
            ++I+ +  S   YV L N+Y     WD  S +R +M++  + K  G SWIE++ V
Sbjct: 483 GKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGV 538



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 98/191 (51%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  +L   S+L    + +Q+H + +K     N+ V T+L+  Y K   L+ A K+
Sbjct: 288 PNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKL 347

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+    VV+WN++ISGY Q G  ++A+NLF  ++   +  +  +F + L AC   G  
Sbjct: 348 FGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLC 407

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G+     + + Y +E  V   +C++D+  + G +E A+ +   M  +    ++ +++A
Sbjct: 408 DFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLA 467

Query: 179 ASARNGNLELA 189
           A     NLE A
Sbjct: 468 ACRVYKNLEFA 478


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 151/567 (26%), Positives = 270/567 (47%), Gaps = 77/567 (13%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +QLH +I+ SG + + F+ + L+ FY  +  L +AH +          SWN LI+ YV+ 
Sbjct: 99  KQLHGHIISSGLVEDSFLVSKLVMFYSSLEFLPEAHTLVETSNLFRPCSWNILITSYVKH 158

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
             Y  A+  + ++    +  D ++F S L ACG+  +L+ G+ +H  I  +S    + + 
Sbjct: 159 KLYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFVH 218

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKD--------------------------------- 169
           N LI MYG+CG V+ A  +F  M+++D                                 
Sbjct: 219 NALISMYGRCGEVDTARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLE 278

Query: 170 --IISWNSVIAASARNGNLELAFGFLHRLPNPD--------------------------- 200
             +++WN +     R GN   A   L ++ N                             
Sbjct: 279 INVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEI 338

Query: 201 ---TISY---------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRV 248
              TI +         N ++   A+  DI  A M+       +  +WNS+L+G  +  RV
Sbjct: 339 HGFTIRHYHHMLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRV 398

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK-QGLDASIVVASA 307
            EAL LF E+    V  D  TF+++L   A ++ L  G   H  + K +     +++ +A
Sbjct: 399 EEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITKHRDFRDHLLLWNA 458

Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367
           L+DMY++ G+V  A  +F SL +K+ VT+ ++I GY   G+  K + LFE++K  + ++P
Sbjct: 459 LVDMYARAGKVSEAKRIFYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQ-IKP 517

Query: 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQR 427
           D +T + VL+ACSH+ +  ++    F  M   +G+ P +EH   M  L G+ G + +A+ 
Sbjct: 518 DHITMIAVLSACSHSGL-VNQAELLFAEMQSVHGLSPRLEHYACMADLFGRVGLLNKAKE 576

Query: 428 MIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGN 487
           +I  + +     +W  L+ A     ++D+   +A +++++  +    YV++ N+Y + G+
Sbjct: 577 IITRMPYRPTSAIWATLIGACCIHGNMDIGEWAAEKLLEMRPEHSGYYVLIANMYAAAGS 636

Query: 488 WDVASVMRNFMRERGLRKEAGCSWIEV 514
           W   + +R  MR+ G+ K  GCSW++V
Sbjct: 637 WSKLAEIRTLMRDSGVAKIPGCSWVDV 663


>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
          Length = 537

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/503 (29%), Positives = 255/503 (50%), Gaps = 15/503 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKIN---SLADAHKMFVEIPQPSVVSWNSLISGY 79
           +Q+H  ++  GFLS+      L+ F   +      A A  +F  IP P    +N+LI G 
Sbjct: 25  KQVHALMVLQGFLSDSSALRELI-FASAVGVRGGTAHARLVFDRIPHPDRFMYNTLIRGA 83

Query: 80  VQSGKYRKALNLFVELERSE-------IYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132
             S   R A++++  + R         +  D  +F   L AC  +G+ + G  +H+ +VK
Sbjct: 84  AHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVHAHVVK 143

Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF 192
              E    + N LI M+   G +  A  +F     +D ++W+++I+  AR G++  A   
Sbjct: 144 AGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAAREL 203

Query: 193 LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEAL 252
               P  D +S+N +I   A+ GD+  A  +    P  +  SWN++++GYV      +A+
Sbjct: 204 FDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAM 263

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ--GLDASIVVASALLD 310
            LF +MQ+     D  T  ++LS  A    L  G  +H  +  +   +  +  + +AL+D
Sbjct: 264 ELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALID 323

Query: 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370
           MY+KCG +  A  +F  +  KN+ TWN++I G A +G  T+ I +F ++    +++PD +
Sbjct: 324 MYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKM-LQGNVKPDEI 382

Query: 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430
           TF+ VLAACSH  +  DK  EYF  M + Y I+P ++H   M+ ++ + G +  A   I 
Sbjct: 383 TFVAVLAACSHGGM-VDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIG 441

Query: 431 ELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490
            +      V+WR LL A     ++++A  +  E++K   D+   +V+L N+Y S G W  
Sbjct: 442 TMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSDASGDFVLLSNIYASVGEWPG 501

Query: 491 ASVMRNFMRERGLRKEAGCSWIE 513
           +  MR  M + G+ KEAG + I+
Sbjct: 502 SENMRKLMDDSGVNKEAGRAVID 524



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 184/396 (46%), Gaps = 31/396 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++     +LRA + +G      Q+H +++K+G  S+ FV  AL+G +  +  L  A  +
Sbjct: 113 PDKRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAAL 172

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F    +   V+W+++ISG+ + G    A  LF E        D  S+   + A  +LG  
Sbjct: 173 FDGEAREDAVAWSAMISGFARRGDIGAARELFDE----SPVKDLVSWNVMITAYAKLGD- 227

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMI----DKDIISWNSV 176
              MA   ++   + +R VV  N +I  Y +CGS + A+ +F +M       D ++  S+
Sbjct: 228 ---MAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSL 284

Query: 177 IAASARNGNLELA---FGFL----HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229
           ++A A +G+L+      GFL     R+  P T   N +I+  A+ G +  A+ +   M  
Sbjct: 285 LSACADSGDLDAGRRLHGFLSGRFSRI-GPTTALGNALIDMYAKCGSMTSALEVFWLMQD 343

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            N S+WNSI+ G        E++ +F +M   +V  DE TF  +L+  +    +  G   
Sbjct: 344 KNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEY 403

Query: 290 HSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADSMFRSL-CRKNLVTWNAMITGYARNG 347
            S + ++  ++ +I     ++DM S+ G ++ A     ++    N V W  ++     +G
Sbjct: 404 FSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHG 463

Query: 348 DLTKVIELFEQ-----LKTVRDLQPDSVTFLNVLAA 378
           +    IEL E      LK   D   D V   N+ A+
Sbjct: 464 E----IELAEHANRELLKARSDASGDFVLLSNIYAS 495


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 153/499 (30%), Positives = 260/499 (52%), Gaps = 14/499 (2%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           Q +H  I++ GF S+  V  +L+  Y K   + +A K+F  +P  S VSWN LI+G+ Q+
Sbjct: 269 QCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQA 328

Query: 83  GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
           G Y KAL +   +E S    +  ++++ LA+C +   +    A+  KI + S    V   
Sbjct: 329 GSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKISRPS----VTTW 384

Query: 143 NCLIDMYGKCGSVEDAIGVFGEM----IDKDIISWNSVIAASARNGNLELAF----GFLH 194
           N L+  Y +    +D + +F  M    +  D  +   ++++ +R G L+L        + 
Sbjct: 385 NTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVR 444

Query: 195 RLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
            L + D    + +++  ++ G I  A +I + M   +   WNS+++G    +   EA   
Sbjct: 445 FLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDF 504

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
           F +M+   +   E ++++M++  A LS++  G  IH+ ++K G D ++ V SAL+DMY+K
Sbjct: 505 FKQMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAK 564

Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
           CG ++ A   F  +  KN+V WN MI GYA+NG   K ++LFE + T    +PD VTF+ 
Sbjct: 565 CGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQ-RPDGVTFIA 623

Query: 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434
           VL  CSH+ +  D+   +F SM   YGI P  EH   +I  +G+ G +   + +I  +  
Sbjct: 624 VLTGCSHSGL-VDEAIAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPC 682

Query: 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494
               +VW  LL+A     + ++   +A  + +L+  +   YV+L N+Y S G    AS +
Sbjct: 683 KDDPIVWEVLLAACAVHHNAELGECAAKHLFRLDPKNPSPYVLLSNIYASLGRHGDASGV 742

Query: 495 RNFMRERGLRKEAGCSWIE 513
           R  M  RG+ K  G SWI+
Sbjct: 743 RALMSSRGVVKGRGYSWID 761



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 205/398 (51%), Gaps = 14/398 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  + L  +L A   +      ++ H   +K G   N+FV  AL+G Y K   + DA ++
Sbjct: 138 PTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRL 197

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ---- 116
           F  +  P+ VS+ +++ G VQ+G    AL LF  + RS +  D  + +S L +C Q    
Sbjct: 198 FDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACAS 257

Query: 117 ----LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS 172
               + + +LG  IH+ IV+        + N LIDMY KC  +++A+ VF  + +   +S
Sbjct: 258 EFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVS 317

Query: 173 WNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMP 228
           WN +I    + G+   A   L+ +      P+ ++Y+ ++    +  D+  A  +   + 
Sbjct: 318 WNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKIS 377

Query: 229 SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML 288
            P+ ++WN++L+GY       + + LF  MQ ++V  D  T + +LS  + L  L  G  
Sbjct: 378 RPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQ 437

Query: 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGD 348
           +HS  ++  L   + VAS L+DMYSKCGQ+ IA  +F  +  +++V WN+MI+G A +  
Sbjct: 438 VHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSL 497

Query: 349 LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIP 385
             +  + F+Q++    + P   ++ +++ +C+  + +P
Sbjct: 498 NEEAFDFFKQMRG-NGMMPTESSYASMINSCARLSSVP 534



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 170/395 (43%), Gaps = 83/395 (21%)

Query: 37  NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
           N +   A +   R+   L  A  +  E+P  +VVSWN++I+   +S +  +AL L+  + 
Sbjct: 73  NAYSYNAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGML 132

Query: 97  RSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156
           R  +    ++  S L+ACG + +L  G   H   VK  L+  + + N L+ MY KCG VE
Sbjct: 133 REGLVPTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVE 192

Query: 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP----DTISYNEVINGIA 212
           DA+ +F  M   + +S+ +++    + G+++ A     R+       D ++ + V+   A
Sbjct: 193 DAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCA 252

Query: 213 Q--------------------------FG-----------------DIEDAIMILSSMPS 229
           Q                          FG                  +++A+ +  S+P+
Sbjct: 253 QACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPN 312

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289
            ++ SWN ++TG+       +AL +   M+      +E T+S ML+              
Sbjct: 313 ISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLA-------------- 358

Query: 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDL 349
            SC+                    K   V  A +MF  + R ++ TWN +++GY +    
Sbjct: 359 -SCI--------------------KARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELH 397

Query: 350 TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDI 384
              +ELF +++  +++QPD  T   +L++CS   I
Sbjct: 398 QDTVELFRRMQH-QNVQPDRTTLAVILSSCSRLGI 431



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 137/274 (50%), Gaps = 9/274 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+   L  +L + S LG      Q+H   ++    +++FV++ L+  Y K   +  A  +
Sbjct: 414 PDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARII 473

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  + +  VV WNS+ISG        +A + F ++  + +     S+ S + +C +L S+
Sbjct: 474 FNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSV 533

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
             G  IH++IVK   ++ V + + LIDMY KCG+++DA   F  M+ K+I++WN +I   
Sbjct: 534 PQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNIVAWNEMIHGY 593

Query: 181 ARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
           A+NG  E A      +      PD +++  V+ G +  G +++AI   +SM S     P 
Sbjct: 594 AQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVDEAIAFFNSMESTYGITPL 653

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
           +  +  ++ G     R+ E   L   M  KD P+
Sbjct: 654 AEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDPI 687



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 1/186 (0%)

Query: 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLF 255
           LP P+  SYN  ++   + GD++ A  +L  MP  N  SWN+++       R  EAL L+
Sbjct: 69  LPRPNAYSYNAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELY 128

Query: 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315
             M  + +    +T +++LS    ++AL  G   H   +K GLD ++ V +ALL MY+KC
Sbjct: 129 EGMLREGLVPTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKC 188

Query: 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375
           G VE A  +F  +   N V++ AM+ G  + G +   + LF ++     ++ D V   +V
Sbjct: 189 GGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARM-CRSGVRVDPVAVSSV 247

Query: 376 LAACSH 381
           L +C+ 
Sbjct: 248 LGSCAQ 253



 Score = 42.7 bits (99), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 11/115 (9%)

Query: 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKV 352
           V+  GL A   + + L+++YS  G    A   FRSL R N  ++NA ++   R GDL   
Sbjct: 34  VLAAGLGADTFLINRLVELYSVSGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAA 93

Query: 353 IELFEQLKTVRDLQPDS--VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
             L +++       PD   V++  V+AA + ++   + + E +E M ++ G+ PT
Sbjct: 94  RALLDEM-------PDRNVVSWNTVIAALARSERAGEAL-ELYEGMLRE-GLVPT 139


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 148/497 (29%), Positives = 255/497 (51%), Gaps = 37/497 (7%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGF--YRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80
           +Q H  I++ G  ++      ++ F    K   L  A ++F +IP P    +N++  GY+
Sbjct: 37  KQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYL 96

Query: 81  QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVV 140
           +    R  + ++  +    +  + +++   + AC    +++ G  IH+ ++K+       
Sbjct: 97  RWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGF 156

Query: 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPD 200
             N LI MY    S+E A  VF  M                               P  D
Sbjct: 157 SLNNLIHMYVNFQSLEQARRVFDNM-------------------------------PQRD 185

Query: 201 TISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
            +S+  +I G +Q+G ++ A  +   MP  NS SWN+++  YV  NR+ EA  LF  M+ 
Sbjct: 186 VVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRL 245

Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
           ++V +D++  ++MLS   GL AL  G  IH  + K G++    +A+ ++DMY KCG +E 
Sbjct: 246 ENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEK 305

Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL-QPDSVTFLNVLAAC 379
           A  +F  L +K + +WN MI G A +G     IELF++++  R++  PD +TF+NVL+AC
Sbjct: 306 ASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEME--REMVAPDGITFVNVLSAC 363

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           +H+ +  ++   YF+ MT+  G+KP +EH   M+ L+G+ G +  A+++I E+       
Sbjct: 364 AHSGL-VEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAG 422

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           V  AL+ A     + ++      +VI+LE  +   YV+L NLY S G W+  + +R  M 
Sbjct: 423 VLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMN 482

Query: 500 ERGLRKEAGCSWIEVEN 516
           +RG++K  G S IE E+
Sbjct: 483 DRGVKKAPGFSMIESES 499



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 98/190 (51%), Gaps = 2/190 (1%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           +++V   +L A + LG     + +H YI KSG   +  ++T ++  Y K   L  A ++F
Sbjct: 251 DKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVF 310

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            E+PQ  + SWN +I G    GK   A+ LF E+ER  +  D  +F + L+AC   G ++
Sbjct: 311 NELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVE 370

Query: 122 LGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
            G      + +   L+ G+    C++D+ G+ G +E+A  +  EM ++ D     +++ A
Sbjct: 371 EGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGA 430

Query: 180 SARNGNLELA 189
              +GN EL 
Sbjct: 431 CRIHGNTELG 440


>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 156/512 (30%), Positives = 258/512 (50%), Gaps = 38/512 (7%)

Query: 9   LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFY--RKINSLADAHKMFVEIPQ 66
           LL   S++G     +Q+H  +LK G + +    + L+  Y   + ++L  A  +F  I  
Sbjct: 17  LLERCSNIG---ELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISS 73

Query: 67  PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI 126
           P+ V WN++I  Y  S    +AL L+ ++    I  +AY+F   L AC  L +L     I
Sbjct: 74  PNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQI 133

Query: 127 HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNL 186
           H +I+K      V   N L+ +Y   GS++ A  +F      D+                
Sbjct: 134 HVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLF------DL---------------- 171

Query: 187 ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246
                    LP+ D +S+N +I+G  + G++E A  I  +MP  N  SW S++ G+V   
Sbjct: 172 ---------LPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTG 222

Query: 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
              EAL L  +M    +  D+ T S  LS  AGL AL  G  IH+ + K  +    V+  
Sbjct: 223 MHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGC 282

Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
           AL+DMY KCG+++ A  +F  L +K + TW A+I G+A +G  ++ ++ F Q++    ++
Sbjct: 283 ALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKA-GIK 341

Query: 367 PDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426
           P S TF  VL ACSHT +  ++    FESM+  Y +KP +EH   M+ L+G+ G +  A+
Sbjct: 342 PTSFTFTAVLTACSHTGL-VEEGKSLFESMSTFYNMKPVMEHYGCMVDLLGRAGFLKEAK 400

Query: 427 RMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486
             +  +       +W +LL+A      L++ +     +I+L+ + D  Y+ L +++ + G
Sbjct: 401 EFVESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIELDPEHDGRYIHLASIHAAAG 460

Query: 487 NWDVASVMRNFMRERGLRKEAGCSWIEVENVA 518
            WD AS +R+ ++ +GL    GCS I +  VA
Sbjct: 461 EWDEASQVRSHIKNKGLLNLPGCSTITLNGVA 492



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 35/263 (13%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N Y    LL+A S L       Q+H  I+K GF S V+ + +L+  Y    S+  AH +F
Sbjct: 110 NAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLF 169

Query: 62  VEIPQPSVVSWNSLISGY-------------------------------VQSGKYRKALN 90
             +P   +VSWN++I GY                               V++G +++AL 
Sbjct: 170 DLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALC 229

Query: 91  LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
           L  ++  + I  D  + + +L+AC  LG+L+ G  IH+ I K  ++   V+   LIDMY 
Sbjct: 230 LLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYV 289

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNE 206
           KCG ++ A+ VF ++  K + +W ++I   A +G    A  +  ++      P + ++  
Sbjct: 290 KCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTA 349

Query: 207 VINGIAQFGDIEDAIMILSSMPS 229
           V+   +  G +E+   +  SM +
Sbjct: 350 VLTACSHTGLVEEGKSLFESMST 372



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 97/191 (50%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P++  L   L A + LG     + +H YI K+    +  +  AL+  Y K   +  A  +
Sbjct: 241 PDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLV 300

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F ++ +  V +W ++I G+   GK  +AL+ F +++++ I   +++FT+ L AC   G +
Sbjct: 301 FSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLV 360

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
           + G ++   +   Y+++  +    C++D+ G+ G +++A      M I  +   W S++ 
Sbjct: 361 EEGKSLFESMSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLN 420

Query: 179 ASARNGNLELA 189
           A   + +LEL 
Sbjct: 421 ACHLHKHLELG 431


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 155/551 (28%), Positives = 264/551 (47%), Gaps = 39/551 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN       + A+S    D   + +H   +  G  S + + + ++  Y K   + DA K+
Sbjct: 117 PNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKV 176

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVEL-ERSEIYADAYSFTSALAACGQLGS 119
           F  +P+   + WN++ISGY ++  Y +++ +F +L   S    D  +    L A  +L  
Sbjct: 177 FDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQE 236

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
           L+LGM IHS   K        +    I +Y KCG ++    +F E    DI+++N++I  
Sbjct: 237 LRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHG 296

Query: 180 SARNGNLELAFGFLH-------RLPNPDTISYNEV---------INGI------------ 211
              NG  EL+            RL +   +S   V         I+G             
Sbjct: 297 YTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASV 356

Query: 212 --------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
                   ++  +IE A  +    P  +  SWN++++GY       +A+ LF EMQ  + 
Sbjct: 357 STALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEF 416

Query: 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
             +  T + +LS  A L AL+ G  +H  V     ++SI V++AL+ MY+KCG +  A  
Sbjct: 417 SPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARR 476

Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
           +F  + +KN VTWN MI+GY  +G   + + +F ++     + P  VTFL VL ACSH  
Sbjct: 477 LFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLN-SGITPTPVTFLCVLYACSHAG 535

Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
           +   +  E F SM   YG +P+V+H   M+ ++G+ G + RA + I  +       VW  
Sbjct: 536 L-VKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWET 594

Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
           LL A     D ++AR  + ++ +L+ D+   +V+L N++++  N+  A+ +R   ++R L
Sbjct: 595 LLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKL 654

Query: 504 RKEAGCSWIEV 514
            K  G + IE+
Sbjct: 655 AKAPGYTLIEI 665



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 100/471 (21%), Positives = 208/471 (44%), Gaps = 48/471 (10%)

Query: 20  TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79
           ++  Q H  I+  GF +++ + T L      + ++  A  +F+ + +P V  +N L+ G+
Sbjct: 34  SHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGF 93

Query: 80  VQSGKYRKALNLFVELERS-EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG 138
             +     +L++F  L +S ++  ++ ++  A++A       + G  IH + V    +  
Sbjct: 94  SVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSE 153

Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN 198
           +++ + ++ MY K   VEDA  VF  M +KD I WN++I+   +N     +      L N
Sbjct: 154 LLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLIN 213

Query: 199 P-----DTISYNEVINGIAQF-----------------------------------GDIE 218
                 DT +  +++  +A+                                    G I+
Sbjct: 214 ESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIK 273

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
               +      P+  ++N+++ GY +      +L LF E+      +   T  +++  ++
Sbjct: 274 MGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVP-VS 332

Query: 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
           G   L +   IH   +K    +   V++AL  +YSK  ++E A  +F     K+L +WNA
Sbjct: 333 GHLMLIYA--IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNA 390

Query: 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398
           MI+GY +NG     I LF +++   +  P+ VT   +L+AC+   +    + ++   + +
Sbjct: 391 MISGYTQNGLTEDAISLFREMQK-SEFSPNPVTITCILSACAQ--LGALSLGKWVHDLVR 447

Query: 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449
               + ++    ++I +  + G +  A+R+  +L      V W  ++S  G
Sbjct: 448 STDFESSIYVSTALIGMYAKCGSIAEARRLF-DLMTKKNEVTWNTMISGYG 497


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 131/496 (26%), Positives = 258/496 (52%), Gaps = 33/496 (6%)

Query: 20  TYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79
           ++ + +H +++++  + +VF ++ L+      N L  A ++F +I  P++  +NS I G+
Sbjct: 29  SHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGF 88

Query: 80  VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139
             S    K+ + +V+ +R+ +  D  ++   + AC Q GSL +G+  H +I+++  +  V
Sbjct: 89  SGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDV 148

Query: 140 VIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP 199
            + N L+ MY   G ++ A  VF  +   D++SW S++A                     
Sbjct: 149 YVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVA--------------------- 187

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                     G  + GD+  A  +   MP  N  +W+ +++GY   +   +A+ L+  +Q
Sbjct: 188 ----------GYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQ 237

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           S+ V  +E    ++++  A L AL  G   H  +++  +  ++++ +AL+DMY++CG ++
Sbjct: 238 SEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSID 297

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F  L  ++ ++W  +I G+A +G   K +E F +++    L P  +TF  VL+AC
Sbjct: 298 KAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKA-GLTPREITFTAVLSAC 356

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           SH  +  ++  E FESM +DY I+P +EH   M+ L+G+ G++  A++ + E+       
Sbjct: 357 SHGGL-VERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAP 415

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +W ALL A     + ++A  +   +I+L+ +    YV+L N+Y     W+    +R  M+
Sbjct: 416 IWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMK 475

Query: 500 ERGLRKEAGCSWIEVE 515
           ERG+ K  G +  E++
Sbjct: 476 ERGVVKPPGYTLFEMD 491



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 99/190 (52%), Gaps = 2/190 (1%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NE V+  ++ + + LG     ++ H YIL++    N+ + TAL+  Y +  S+  A  +F
Sbjct: 244 NETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVF 303

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
            ++P    +SW +LI+G+   G   KAL  F  +E++ +     +FT+ L+AC   G ++
Sbjct: 304 DQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVE 363

Query: 122 LGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
            G+ +   + + Y +E  +    C++D+ G+ G + +A     EM +  +   W +++ A
Sbjct: 364 RGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGA 423

Query: 180 SARNGNLELA 189
              + N E+A
Sbjct: 424 CRIHKNSEIA 433


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 172/546 (31%), Positives = 270/546 (49%), Gaps = 50/546 (9%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H   +K G +  + V  AL+  Y K   L++A  +F +I   SVVSWNS+I  Y + G 
Sbjct: 335 IHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGF 394

Query: 85  YRKALNLFVEL--ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
             +  +L  ++  E   +  +  +  + L AC +   L    A+H   +++S +   +I 
Sbjct: 395 VFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELIN 454

Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN---- 198
           N  I  Y KCGS+  A  VF  M  K + SWN+VI   A+NG+   A  F   +      
Sbjct: 455 NAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGIL 514

Query: 199 PDTIS---------------YNEVINGIAQFGDIED----AIMILS-------------- 225
           PD  S               Y + I+G      +E     A+ +LS              
Sbjct: 515 PDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTY 574

Query: 226 --SMPSPNSSSWNSILTGYVNRNRVP-EALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
             +M   NS  WN++L+GY ++N +P EAL LF +M S  +  DE   +++L   + LSA
Sbjct: 575 FETMGDKNSVCWNAMLSGY-SQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSA 633

Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
           L  G  +H   +K  L     VA +L+DMY+K G +  +  +F  L  K + +WN MITG
Sbjct: 634 LGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITG 693

Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
           +  +G   K +ELFE +K   D QPD  TFL VL AC H  +  + ++ Y   M   Y +
Sbjct: 694 FGVHGQGNKAVELFEDMKR-SDKQPDRFTFLGVLQACCHAGLVSEGLN-YLAQMQTLYKL 751

Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
           +P +EH   +I ++G+ G +  A   I E+       +W +LLS+S    DL++    A 
Sbjct: 752 EPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAE 811

Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN-----V 517
           +++ LE +    Y++L NLY + G WDV  ++R  M++  L+K+ GCSWIE+       +
Sbjct: 812 KLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFI 871

Query: 518 AAHSSN 523
           A  +SN
Sbjct: 872 AGENSN 877



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/496 (26%), Positives = 235/496 (47%), Gaps = 55/496 (11%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +    L++A +        + +H   +K G + ++FV  A++  Y K   L +A ++
Sbjct: 208 PDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVEL 267

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSE--IYADAYSFTSALAACGQLG 118
           F ++P+ +++SWNSLI G+ ++G + +A   F  L  S   +  D  +  + L  C   G
Sbjct: 268 FDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEG 327

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           ++ +GM IH   VK  L   +++ N LIDMY KCG + +A  +F ++ +K ++SWNS+I 
Sbjct: 328 NVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIG 387

Query: 179 ASARNGNLELAFGFLHRL--------PNPDTI---------------------------- 202
           A +R G +   F  L ++         N  TI                            
Sbjct: 388 AYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSF 447

Query: 203 SYNEVIN-----GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGE 257
            Y E+IN       A+ G +  A  +   M + + SSWN+++ G+       +AL  + E
Sbjct: 448 QYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFE 507

Query: 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
           M    +  D+++  ++L     L  L +G  IH  V++ GL+ +  VA +LL +Y  C +
Sbjct: 508 MTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSK 567

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
                + F ++  KN V WNAM++GY++N    + + LF Q+ +   L+PD +   ++L 
Sbjct: 568 PFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLS-DGLEPDEIAIASILG 626

Query: 378 ACSH-TDIPFDKVSEYF---ESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
           ACS  + +   K    F    S+ +D  +       CS++ +  + G +  +QR+   L 
Sbjct: 627 ACSQLSALGLGKEVHCFALKNSLMEDNFV------ACSLMDMYAKSGFLGHSQRIFNRLN 680

Query: 434 FGSYGVVWRALLSASG 449
            G     W  +++  G
Sbjct: 681 -GKEVASWNVMITGFG 695



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 187/392 (47%), Gaps = 45/392 (11%)

Query: 32  SGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNL 91
           S F  +  ++T L+  Y       ++  +F  +   ++  WN+L+SGYV++  Y +A++ 
Sbjct: 137 SQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHT 196

Query: 92  FVEL-ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
           F+EL   +E   D ++F   + AC     + LG ++H   VK  L   + + N +I +YG
Sbjct: 197 FLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYG 256

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN-LELAFGFLHRLPNPD--------- 200
           KCG +++A+ +F +M ++++ISWNS+I   + NG  LE    F   L + D         
Sbjct: 257 KCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATM 316

Query: 201 -----------TISYNEVINGIA--------------------QFGDIEDAIMILSSMPS 229
                       +    VI+G+A                    + G + +A ++   + +
Sbjct: 317 VTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIEN 376

Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGE--MQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287
            +  SWNS++  Y     V E   L  +  M+ + + ++E T   +L      S L    
Sbjct: 377 KSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLR 436

Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347
            +H   ++       ++ +A +  Y+KCG +  A+ +F  +  K++ +WNA+I G+A+NG
Sbjct: 437 ALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNG 496

Query: 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
           D  K ++ + ++ T   + PD  + +++L AC
Sbjct: 497 DPIKALDFYFEM-TRLGILPDDFSIVSLLLAC 527



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 124/267 (46%), Gaps = 9/267 (3%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++ +  LL A   LG   Y +++H ++L++G   N FV+ +L+  Y   +        
Sbjct: 515 PDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTY 574

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F  +   + V WN+++SGY Q+    +AL+LF ++    +  D  +  S L AC QL +L
Sbjct: 575 FETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSAL 634

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
            LG  +H   +K SL     +A  L+DMY K G +  +  +F  +  K++ SWN +I   
Sbjct: 635 GLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGF 694

Query: 181 ARNGN----LELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PN 231
             +G     +EL          PD  ++  V+      G + + +  L+ M +     P 
Sbjct: 695 GVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPE 754

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEM 258
              +  ++       R+ EAL+   EM
Sbjct: 755 LEHYACVIDMLGRAGRLNEALNFINEM 781



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 5/231 (2%)

Query: 219 DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS-KDVPMDEYTFSTMLSGI 277
           ++ ++   + + N   WN++++GYV      EA+H F E+ S  +   D +TF  ++   
Sbjct: 161 ESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKAC 220

Query: 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWN 337
            G   +  G  +H   +K GL   + V +A++ +Y KCG ++ A  +F  +  +NL++WN
Sbjct: 221 TGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWN 280

Query: 338 AMITGYARNGDLTKVIELFEQLKTVRD-LQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396
           ++I G++ NG   +    F  L    D L PD  T + +L  CS        V      M
Sbjct: 281 SLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNV--DVGMVIHGM 338

Query: 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
               G+   +  C ++I +  + G +  A  + R++   S  V W +++ A
Sbjct: 339 AVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSV-VSWNSMIGA 388



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 2/98 (2%)

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
           CV  Q      V+ + L+ MYS CG    +  +F  L  KNL  WNA+++GY RN    +
Sbjct: 134 CVSSQ-FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDE 192

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACS-HTDIPFDK 388
            I  F +L +V + QPD+ TF  ++ AC+   DI   K
Sbjct: 193 AIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGK 230


>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
 gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
          Length = 551

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/476 (31%), Positives = 245/476 (51%), Gaps = 43/476 (9%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD 103
           L G+ R +  LADA  +F  IP P  VS+N+L+S +  SG    A  LF  +        
Sbjct: 55  LAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMP------- 107

Query: 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
                                            R VV  N ++    K G+VE+A  VF 
Sbjct: 108 --------------------------------VRDVVSWNTMVSGLSKSGAVEEAKAVFL 135

Query: 164 EMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP-DTISYNEVINGIAQFGDIEDAIM 222
            M  ++ +SWN++++  A + ++  A  +    P   D + +  +++G    G++  AI 
Sbjct: 136 AMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIE 195

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLS 281
              +MP  N  SWN+++ GYV  +   +AL LF  M +  +V  +  T S++L G + LS
Sbjct: 196 YFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLS 255

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL +G  IH   +K  L  ++ V ++L+ MY KCG +  A  +F  +  +++V WNAMI+
Sbjct: 256 ALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMIS 315

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYA++GD  + I LFE++K    ++P+ +TF+ VL AC HT +  D     FE M + YG
Sbjct: 316 GYAQHGDGKEAINLFERMKD-EGVEPNWITFVAVLTACIHTGL-CDFGIRCFEGMQELYG 373

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I+P V+H   M+ L+ + G++ RA  +IR + F  +   +  LL+A     +L+ A ++A
Sbjct: 374 IEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAA 433

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
            ++I+ +  S   YV L N+Y     WD  S +R +M++  + K  G SWIE++ V
Sbjct: 434 GKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGV 489



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 98/191 (51%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  +L   S+L    + +Q+H + +K     N+ V T+L+  Y K   L+ A K+
Sbjct: 239 PNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKL 298

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+    VV+WN++ISGY Q G  ++A+NLF  ++   +  +  +F + L AC   G  
Sbjct: 299 FGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLC 358

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G+     + + Y +E  V   +C++D+  + G +E A+ +   M  +    ++ +++A
Sbjct: 359 DFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLA 418

Query: 179 ASARNGNLELA 189
           A     NLE A
Sbjct: 419 ACRVYKNLEFA 429


>gi|356534091|ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic-like [Glycine max]
          Length = 903

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 154/557 (27%), Positives = 277/557 (49%), Gaps = 43/557 (7%)

Query: 1   PNEYVLFHLLRASSDLGWDT-YCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHK 59
           PNE+    LL   S LG    Y + LH  ++  G   N+ + TA++  Y K   + DA K
Sbjct: 216 PNEFTFVKLLGMPSFLGLGKGYGKVLHSQLITFGVEMNLMLKTAIICMYAKCRRMEDAIK 275

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119
           +  + P+  V  W S+ISG+VQ+ + R+A+N  V++E S I  + +++ S L A   + S
Sbjct: 276 VSQQTPKYDVCLWTSIISGFVQNSQVREAVNALVDMELSGILPNNFTYASLLNASSSVLS 335

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG-SVEDAIGVFGEMIDKDIISWNSVIA 178
           L+LG   HS+++   LE  + + N L+DMY KC  +  + +  F  +   ++ISW S+IA
Sbjct: 336 LELGEQFHSRVIMVGLEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIALPNVISWTSLIA 395

Query: 179 ASARNGNLELAFGFLHRL------PNPDTISY---------------------------- 204
             A +G  E +      +      PN  T+S                             
Sbjct: 396 GFAEHGFEEESVQLFAEMQAAGVQPNSFTLSTILGACSKMKSIIQTKKLHGYIIKTQVDI 455

Query: 205 -----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                N +++  A  G  ++A  ++  M   +  ++ ++      +     AL +   M 
Sbjct: 456 DMAVGNALVDAYAGGGMADEAWSVIGMMNHRDIITYTTLAARLNQQGDHEMALRVITHMC 515

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           + +V MDE++ ++ +S  AGL  +  G  +H    K G +    V+++L+  YSKCG + 
Sbjct: 516 NDEVKMDEFSLASFISAAAGLGIMETGKQLHCYSFKSGFERCNSVSNSLVHSYSKCGSMR 575

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
            A  +F+ +   + V+WN +I+G A NG ++  +  F+ ++ +  ++PDSVTFL+++ AC
Sbjct: 576 DAYRVFKDITEPDRVSWNGLISGLASNGLISDALSAFDDMR-LAGVKPDSVTFLSLIFAC 634

Query: 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGV 439
           S   +  ++  +YF SM K Y I P ++H   ++ L+G+ G +  A  +I  + F    V
Sbjct: 635 SQGSL-LNQGLDYFYSMEKTYHITPKLDHYVCLVDLLGRGGRLEEAMGVIETMPFKPDSV 693

Query: 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499
           +++ LL+A     ++ +    A   ++L+     +Y++L +LY + G  D     R  MR
Sbjct: 694 IYKTLLNACNLHGNVPLGEDMARRCLELDPCDPAIYLLLASLYDNAGLPDFGDKTRKLMR 753

Query: 500 ERGLRKEAGCSWIEVEN 516
           ERGLR+     W+EV++
Sbjct: 754 ERGLRRSPRQCWMEVKS 770



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 108/397 (27%), Positives = 196/397 (49%), Gaps = 42/397 (10%)

Query: 25  LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84
           +H  I+K G   ++++S  L+  Y K   +  A  +F E+P   VVSW +L+S + ++  
Sbjct: 38  VHSPIIKVGLQHDLYLSNNLLCLYAKCFGVGQARHLFDEMPHRDVVSWTTLLSAHTRNKH 97

Query: 85  YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
           + +AL LF  +  S    + ++ +SAL +C  LG  + G  IH+ +VK  LE   V+   
Sbjct: 98  HFEALQLFDMMLGSGQCPNEFTLSSALRSCSALGEFEFGAKIHASVVKLGLELNHVLGTT 157

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGN----LEL------------ 188
           L+D+Y KC    +   +   + D D++SW ++I++          L+L            
Sbjct: 158 LVDLYTKCDCTVEPHKLLAFVKDGDVVSWTTMISSLVETSKWSEALQLYVKMIEAGIYPN 217

Query: 189 AFGFLHRLPNPDTI----SYNEVING-IAQFG-------------------DIEDAIMIL 224
            F F+  L  P  +     Y +V++  +  FG                    +EDAI + 
Sbjct: 218 EFTFVKLLGMPSFLGLGKGYGKVLHSQLITFGVEMNLMLKTAIICMYAKCRRMEDAIKVS 277

Query: 225 SSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284
              P  +   W SI++G+V  ++V EA++   +M+   +  + +T++++L+  + + +L 
Sbjct: 278 QQTPKYDVCLWTSIISGFVQNSQVREAVNALVDMELSGILPNNFTYASLLNASSSVLSLE 337

Query: 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD-SMFRSLCRKNLVTWNAMITGY 343
            G   HS VI  GL+  I V +AL+DMY KC          FR +   N+++W ++I G+
Sbjct: 338 LGEQFHSRVIMVGLEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIALPNVISWTSLIAGF 397

Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
           A +G   + ++LF +++    +QP+S T   +L ACS
Sbjct: 398 AEHGFEEESVQLFAEMQAA-GVQPNSFTLSTILGACS 433



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 180/389 (46%), Gaps = 41/389 (10%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PNE+ L   LR+ S LG   +  ++H  ++K G   N  + T L+  Y K +   + HK+
Sbjct: 115 PNEFTLSSALRSCSALGEFEFGAKIHASVVKLGLELNHVLGTTLVDLYTKCDCTVEPHKL 174

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG-S 119
              +    VVSW ++IS  V++ K+ +AL L+V++  + IY + ++F   L     LG  
Sbjct: 175 LAFVKDGDVVSWTTMISSLVETSKWSEALQLYVKMIEAGIYPNEFTFVKLLGMPSFLGLG 234

Query: 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
              G  +HS+++ + +E  +++   +I MY KC  +EDAI V  +    D+  W S+I+ 
Sbjct: 235 KGYGKVLHSQLITFGVEMNLMLKTAIICMYAKCRRMEDAIKVSQQTPKYDVCLWTSIISG 294

Query: 180 SARNGNLELAFGFLHRLP----NPDTISYNEVINGIA---------QF----------GD 216
             +N  +  A   L  +      P+  +Y  ++N  +         QF          GD
Sbjct: 295 FVQNSQVREAVNALVDMELSGILPNNFTYASLLNASSSVLSLELGEQFHSRVIMVGLEGD 354

Query: 217 I-----------------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
           I                  + +     +  PN  SW S++ G+       E++ LF EMQ
Sbjct: 355 IYVGNALVDMYMKCSHTTTNGVKAFRGIALPNVISWTSLIAGFAEHGFEEESVQLFAEMQ 414

Query: 260 SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319
           +  V  + +T ST+L   + + ++     +H  +IK  +D  + V +AL+D Y+  G  +
Sbjct: 415 AAGVQPNSFTLSTILGACSKMKSIIQTKKLHGYIIKTQVDIDMAVGNALVDAYAGGGMAD 474

Query: 320 IADSMFRSLCRKNLVTWNAMITGYARNGD 348
            A S+   +  ++++T+  +     + GD
Sbjct: 475 EAWSVIGMMNHRDIITYTTLAARLNQQGD 503



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 147/303 (48%), Gaps = 43/303 (14%)

Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIA 178
           +L+ G  +HS I+K  L+  + ++N L+ +Y KC  V  A  +F EM  +D++SW ++++
Sbjct: 31  TLKEGACVHSPIIKVGLQHDLYLSNNLLCLYAKCFGVGQARHLFDEMPHRDVVSWTTLLS 90

Query: 179 ASARNGN----LELAFGFLHRLPNPDTISYNEVINGIAQFGDIE---------------- 218
           A  RN +    L+L    L     P+  + +  +   +  G+ E                
Sbjct: 91  AHTRNKHHFEALQLFDMMLGSGQCPNEFTLSSALRSCSALGEFEFGAKIHASVVKLGLEL 150

Query: 219 -------------------DAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259
                              +   +L+ +   +  SW ++++  V  ++  EAL L+ +M 
Sbjct: 151 NHVLGTTLVDLYTKCDCTVEPHKLLAFVKDGDVVSWTTMISSLVETSKWSEALQLYVKMI 210

Query: 260 SKDVPMDEYTFSTMLSGIAGLSAL--TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
              +  +E+TF  +L G+     L   +G ++HS +I  G++ ++++ +A++ MY+KC +
Sbjct: 211 EAGIYPNEFTFVKLL-GMPSFLGLGKGYGKVLHSQLITFGVEMNLMLKTAIICMYAKCRR 269

Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
           +E A  + +   + ++  W ++I+G+ +N  + + +     ++ +  + P++ T+ ++L 
Sbjct: 270 MEDAIKVSQQTPKYDVCLWTSIISGFVQNSQVREAVNALVDME-LSGILPNNFTYASLLN 328

Query: 378 ACS 380
           A S
Sbjct: 329 ASS 331


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/476 (31%), Positives = 245/476 (51%), Gaps = 43/476 (9%)

Query: 44  LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD 103
           L G+ R +  LADA  +F  IP P  VS+N+L+S +  SG    A  LF  +        
Sbjct: 55  LAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMP------- 107

Query: 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163
                                            R VV  N ++    K G+VE+A  VF 
Sbjct: 108 --------------------------------VRDVVSWNTMVSGLSKSGAVEEAKAVFL 135

Query: 164 EMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNP-DTISYNEVINGIAQFGDIEDAIM 222
            M  ++ +SWN++++  A + ++  A  +    P   D + +  +++G    G++  AI 
Sbjct: 136 AMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIE 195

Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLS 281
              +MP  N  SWN+++ GYV  +   +AL LF  M +  +V  +  T S++L G + LS
Sbjct: 196 YFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLS 255

Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
           AL +G  IH   +K  L  ++ V ++L+ MY KCG +  A  +F  +  +++V WNAMI+
Sbjct: 256 ALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMIS 315

Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG 401
           GYA++GD  + I LFE++K    ++P+ +TF+ VL AC HT +  D     FE M + YG
Sbjct: 316 GYAQHGDGKEAINLFERMKD-EGVEPNWITFVAVLTACIHTGL-CDFGIRCFEGMQELYG 373

Query: 402 IKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461
           I+P V+H   M+ L+ + G++ RA  +IR + F  +   +  LL+A     +L+ A ++A
Sbjct: 374 IEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAA 433

Query: 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
            ++I+ +  S   YV L N+Y     WD  S +R +M++  + K  G SWIE++ V
Sbjct: 434 GKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGV 489



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 98/191 (51%), Gaps = 2/191 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           PN   L  +L   S+L    + +Q+H + +K     N+ V T+L+  Y K   L+ A K+
Sbjct: 239 PNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKL 298

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F E+    VV+WN++ISGY Q G  ++A+NLF  ++   +  +  +F + L AC   G  
Sbjct: 299 FGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLC 358

Query: 121 QLGMAIHSKIVK-YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
             G+     + + Y +E  V   +C++D+  + G +E A+ +   M  +    ++ +++A
Sbjct: 359 DFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLA 418

Query: 179 ASARNGNLELA 189
           A     NLE A
Sbjct: 419 ACRVYKNLEFA 429


>gi|224058449|ref|XP_002299515.1| predicted protein [Populus trichocarpa]
 gi|222846773|gb|EEE84320.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 153/523 (29%), Positives = 260/523 (49%), Gaps = 46/523 (8%)

Query: 33  GFL--SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALN 90
           GFL  S++  S A+M  Y +     DA K+F EI +P VVSW   I G    G   +A+ 
Sbjct: 2   GFLRGSSMHFSNAVMSMYARCGREVDAIKVFDEIAEPDVVSWTERI-GTASDG--HEAVE 58

Query: 91  LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150
           LF  +    +  + Y+  + L+  G +  L  G  I +   K    + V ++N L+ MYG
Sbjct: 59  LFRIVLSLGLDVNEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQVVSVSNALVSMYG 118

Query: 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNE 206
           KCG + DA  VF  MI +D +SWNS+I+A + NG +  A    +++      P   +   
Sbjct: 119 KCGQICDACRVFYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTLAS 178

Query: 207 VINGIAQFGDIEDAIMI-----------------------------------LSSMPSPN 231
           ++  ++   + +  I I                                    + +   N
Sbjct: 179 ILEAVSNSNNTKQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVFAEIDKVN 238

Query: 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291
               N+++T +V      +AL L+  + S    +D  TFS +L   + ++ +  G  +HS
Sbjct: 239 LVHLNTMITTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQLGRAVHS 298

Query: 292 CVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351
            V+K G D    V S+++D+Y KCG +  A+  FRS    +L  WNAM+ GYA +G   +
Sbjct: 299 LVLKTGFDQDSFVESSVIDIYCKCGSIGQAEKAFRSSSMNSLAAWNAMMMGYAHHGCYQE 358

Query: 352 VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411
           V +LF ++     ++PD +T+L VL++C H  +   +   Y +SM + +GI P +EH   
Sbjct: 359 VFDLFNKMSQF-GIEPDEITYLGVLSSCCHGGL-VKEARHYLDSMFELHGIIPHLEHYAC 416

Query: 412 MIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471
           MI L+G+ G +  A++ I  +       +W+ LLSA      +++ R++A +++++  ++
Sbjct: 417 MIDLLGRVGLLEDAKKTIDHMPIQPDVHIWQILLSACNIHGHVELGRVAARKLLEIHPEN 476

Query: 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
           +  Y++L NLY S G W+    +R  M+E+ LRKE G SWI+V
Sbjct: 477 ESAYILLSNLYASVGMWNAVGRLRKEMKEKNLRKEPGSSWIQV 519



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 122/231 (52%), Gaps = 4/231 (1%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P  + L  +L A S+        Q+H  ++K GF+ +V + + L+  Y + NS+ ++ ++
Sbjct: 171 PTIHTLASILEAVSNSNNTKQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRV 230

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EI + ++V  N++I+ +V++G Y  AL L+  +       D+ +F+  L AC  +  +
Sbjct: 231 FAEIDKVNLVHLNTMITTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDM 290

Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
           QLG A+HS ++K   ++   + + +ID+Y KCGS+  A   F       + +WN+++   
Sbjct: 291 QLGRAVHSLVLKTGFDQDSFVESSVIDIYCKCGSIGQAEKAFRSSSMNSLAAWNAMMMGY 350

Query: 181 ARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSM 227
           A +G  +  F   +++      PD I+Y  V++     G +++A   L SM
Sbjct: 351 AHHGCYQEVFDLFNKMSQFGIEPDEITYLGVLSSCCHGGLVKEARHYLDSM 401



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 132/313 (42%), Gaps = 39/313 (12%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           NEY L ++L     + +    +Q+     K+G+   V VS AL+  Y K   + DA ++F
Sbjct: 71  NEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQVVSVSNALVSMYGKCGQICDACRVF 130

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +     VSWNSLIS   ++G   +AL +F ++    +    ++  S L A     + +
Sbjct: 131 YNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTLASILEAVSNSNNTK 190

Query: 122 LGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASA 181
             + IHS +VK      V + +CLI  YG+C S++++  VF E+   +++  N++I    
Sbjct: 191 QVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLNTMITTFV 250

Query: 182 RNGNLELAFGF------LHRLPNPDTISY------------------------------- 204
           R G    A         LHR  +  T S                                
Sbjct: 251 RAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQLGRAVHSLVLKTGFDQDSF 310

Query: 205 --NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262
             + VI+   + G I  A     S    + ++WN+++ GY +     E   LF +M    
Sbjct: 311 VESSVIDIYCKCGSIGQAEKAFRSSSMNSLAAWNAMMMGYAHHGCYQEVFDLFNKMSQFG 370

Query: 263 VPMDEYTFSTMLS 275
           +  DE T+  +LS
Sbjct: 371 IEPDEITYLGVLS 383


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 139/496 (28%), Positives = 253/496 (51%), Gaps = 34/496 (6%)

Query: 23  QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
           +++H +I+K     + F+ T ++     ++ +  A  +F ++  P+V S+N++I  Y  +
Sbjct: 24  KKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHN 83

Query: 83  GKYRKALNLFVE-LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
            K+  A+ +F + L       D ++F   + +C  L   +LG  +H+ + K+  +   + 
Sbjct: 84  HKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAIT 143

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDT 201
            N LIDMY KCG +  A  V+ EM ++D +SW                            
Sbjct: 144 ENALIDMYTKCGDMSGAYQVYEEMTERDAVSW---------------------------- 175

Query: 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
              N +I+G  + G ++ A  +   MP     SW +++ GY       +AL +F EMQ  
Sbjct: 176 ---NSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVV 232

Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
            +  DE +  ++L   A L AL  G  IH    K G   +  V +AL++MY+KCG ++ A
Sbjct: 233 GIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEA 292

Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
             +F  +  K++++W+ MI G A +G     I +FE ++    + P+ VTF+ VL+AC+H
Sbjct: 293 WGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKA-GVTPNGVTFVGVLSACAH 351

Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
             + +++   YF+ M  DY ++P +EH   ++ L+G+ G+V +A   I ++        W
Sbjct: 352 AGL-WNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTW 410

Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
            +LLS+     +L++A ++  +++KLE +    YV+L N+Y     W+  S +R  +R +
Sbjct: 411 NSLLSSCRIHHNLEIAVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSK 470

Query: 502 GLRKEAGCSWIEVENV 517
            ++K  GCS IEV N+
Sbjct: 471 RIKKTPGCSLIEVNNL 486



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 156/354 (44%), Gaps = 64/354 (18%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+++    ++++ + L      QQ+H ++ K G  ++     AL+  Y K   ++ A+++
Sbjct: 104 PDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQV 163

Query: 61  FVEIPQPSVVSWNSLISGYVQSGK-------------------------------YRKAL 89
           + E+ +   VSWNSLISG+V+ G+                               Y  AL
Sbjct: 164 YEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADAL 223

Query: 90  NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMY 149
            +F E++   I  D  S  S L AC QLG+L++G  IH    K    +   + N L++MY
Sbjct: 224 GIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMY 283

Query: 150 GKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYN 205
            KCG +++A G+F +MI+KD+ISW+++I   A +G    A      +      P+ +++ 
Sbjct: 284 AKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFV 343

Query: 206 EVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265
            V++  A  G                   WN  L  Y +  RV    HL  +++     +
Sbjct: 344 GVLSACAHAG------------------LWNEGLR-YFDVMRVD--YHLEPQIEHYGCLV 382

Query: 266 D--------EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           D        E    T+L       + TW  L+ SC I   L+ ++V    LL +
Sbjct: 383 DLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKL 436


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 134/445 (30%), Positives = 244/445 (54%), Gaps = 41/445 (9%)

Query: 111 LAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI 170
           L  C +   L  G A H++I+   L+  ++ +N LI+MY KCGSV+ A  VF EM  + +
Sbjct: 71  LKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSL 130

Query: 171 ISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGI------------------- 211
           +SWN++I +  +NG    A   L ++    T      I+ +                   
Sbjct: 131 VSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAF 190

Query: 212 --------------------AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEA 251
                               A+ G ++DA+ +  SMP  +  +W+S+  GYV      +A
Sbjct: 191 AIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQA 250

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           L LF +     +  D++  S+++   AGL+A+  G  +++ + K G  ++I VAS+L+DM
Sbjct: 251 LALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDM 310

Query: 312 YSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371
           Y+KCG +E +  +FR + ++N+V WNAMI+G +R+    +V+ LFE+++ +  L P+ VT
Sbjct: 311 YAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQM-GLSPNDVT 369

Query: 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431
           F++VL+AC H  +   K  +YF+ MTK++ + P V H   M+  + + G+++ A  +I +
Sbjct: 370 FVSVLSACGHMGL-VKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISK 428

Query: 432 LGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA 491
           L F +   +W +LL++     +L++A ++A ++  +E  +   Y++L N+Y ++G WD  
Sbjct: 429 LPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEV 488

Query: 492 SVMRNFMRERGLRKEAGCSWIEVEN 516
           + MR  ++E  ++KE G SWIE+++
Sbjct: 489 AKMRKLLKESDVKKERGKSWIEIKD 513



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 175/384 (45%), Gaps = 46/384 (11%)

Query: 26  HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKY 85
           H  IL  G  +++  S  L+  Y K  S+  A ++F E+P  S+VSWN++I    Q+G+ 
Sbjct: 87  HAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEE 146

Query: 86  RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
            +AL+L ++++R       ++ +S L AC    +L     +H+  +K +++  V +A  L
Sbjct: 147 NEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATAL 206

Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR---------- 195
           +D+Y KCG ++DA+ VF  M D+ +++W+S+ A   +N   E A     +          
Sbjct: 207 LDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQ 266

Query: 196 ------------------------LPNPDTISYN-----EVINGIAQFGDIEDAIMILSS 226
                                   L +      N      +I+  A+ G IE++  +   
Sbjct: 267 FLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRD 326

Query: 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286
           +   N   WN++++G     R  E + LF +MQ   +  ++ TF ++LS    +  +  G
Sbjct: 327 VEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKG 386

Query: 287 MLIHSCVIKQ-GLDASIVVASALLDMYSKCGQV-EIADSMFRSLCRKNLVTWNAMITGYA 344
                 + K+  L  ++   S ++D  S+ GQ+ E  D + +     +   W +++    
Sbjct: 387 QKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCR 446

Query: 345 RNGDLTKVIELFE-QLKTVRDLQP 367
            +G+L    EL E   K + D++P
Sbjct: 447 THGNL----ELAEVAAKKLFDIEP 466



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 152/299 (50%), Gaps = 27/299 (9%)

Query: 22  CQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQ 81
           CQ LH + +K+    NVFV+TAL+  Y K   + DA  +F  +P  SVV+W+S+ +GYVQ
Sbjct: 184 CQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQ 243

Query: 82  SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI 141
           +  Y +AL LF +   + +  D +  +S + AC  L ++  G  +++ + K      + +
Sbjct: 244 NEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFV 303

Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG-NLELAFGF--LHRLP- 197
           A+ LIDMY KCG +E++  VF ++  ++++ WN++I+  +R+  +LE+   F  + ++  
Sbjct: 304 ASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGL 363

Query: 198 NPDTISYNEVINGIAQFGDIEDA-----IMILSSMPSPNSSSWNSILTGYVNRNRVPEAL 252
           +P+ +++  V++     G ++       +M      +PN   ++ ++       ++ EA 
Sbjct: 364 SPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAY 423

Query: 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
            L  ++     P +              SA  WG L+ SC     L+ + V A  L D+
Sbjct: 424 DLISKL-----PFNA-------------SASMWGSLLASCRTHGNLELAEVAAKKLFDI 464


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 160/564 (28%), Positives = 274/564 (48%), Gaps = 82/564 (14%)

Query: 32  SGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP-----QPSVVSWNSLISGYVQSGKYR 86
           SG   +     A++  Y +     +A K F+E+      +P+VVSW +LI+G  Q+G   
Sbjct: 285 SGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDF 344

Query: 87  KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYS-LERGVVIANCL 145
           +AL++F ++    +  ++ +  SA++AC  L  L+ G  IH   +K   L+  +++ N L
Sbjct: 345 EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 404

Query: 146 IDMYGKC-------------------------------GSVEDAIGVFGEM----IDKDI 170
           +D Y KC                               GS E+AI +  EM    I+ DI
Sbjct: 405 VDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDI 464

Query: 171 ISWNSVIAASARNGNLELAFGFLHRL------PNPDTIS--------------------- 203
           I+WN ++    + G+ + A  F  R+      PN  TIS                     
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGY 524

Query: 204 ----YNEVINGIAQ--------FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEA 251
               + E+  G+             +E A  + S + + +   WNSI++      R   A
Sbjct: 525 VLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNA 584

Query: 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311
           L L  EM   +V ++  T  + L   + L+AL  G  IH  +I+ GLD    + ++L+DM
Sbjct: 585 LDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDM 644

Query: 312 YSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371
           Y +CG ++ +  +F  + +++LV+WN MI+ Y  +G     + LF+Q +T+  L+P+ +T
Sbjct: 645 YGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTM-GLKPNHIT 703

Query: 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431
           F N+L+ACSH+ +  ++  +YF+ M  +Y + P VE    M+ L+ + G+       I +
Sbjct: 704 FTNLLSACSHSGL-IEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEK 762

Query: 432 LGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA 491
           + F     VW +LL A     + D+A  +A  + +LE  S   YV++ N+Y++ G W+ A
Sbjct: 763 MPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDA 822

Query: 492 SVMRNFMRERGLRKEAGCSWIEVE 515
           + +R  M+ERG+ K  GCSWIEV+
Sbjct: 823 AKIRCLMKERGVTKPPGCSWIEVK 846



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/458 (26%), Positives = 215/458 (46%), Gaps = 38/458 (8%)

Query: 24  QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83
           Q+H  ++ +G     F+ + L+  Y +   + DA +MF ++ + +V SW +++  Y   G
Sbjct: 110 QVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLG 169

Query: 84  KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143
            Y + + LF  +    +  D + F     AC +L + ++G  ++  ++    E    +  
Sbjct: 170 DYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKG 229

Query: 144 CLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----NP 199
            ++DM+ KCG ++ A   F E+  KD+  WN +++     G  + A   +  +      P
Sbjct: 230 SILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKP 289

Query: 200 DTISYNEVINGIAQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHL 254
           D +++N +I+G AQ G  E+A      M       PN  SW +++ G        EAL +
Sbjct: 290 DQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSV 349

Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS-CVIKQGLDASIVVASALLDMYS 313
           F +M  + V  +  T ++ +S    LS L  G  IH  C+  + LD+ ++V ++L+D Y+
Sbjct: 350 FRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYA 409

Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
           KC  VE+A   F  + + +LV+WNAM+ GYA  G   + IEL  ++K  + ++PD +T+ 
Sbjct: 410 KCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMK-FQGIEPDIITWN 468

Query: 374 NVLAACSHTDIPFDKVS-EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432
            ++     T     K + E+F+ M    G+ P        +   GQ          +R L
Sbjct: 469 GLVTG--FTQYGDGKAALEFFQRM-HSMGMDPNTTTISGALAACGQ----------VRNL 515

Query: 433 GFGS--YGVVWR-----------ALLSASGACSDLDVA 457
             G   +G V R           AL+S    C  L+VA
Sbjct: 516 KLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVA 553



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 108/432 (25%), Positives = 196/432 (45%), Gaps = 60/432 (13%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
           P+ +V   + +A S+L      + ++ Y+L  GF  N  V  +++  + K   +  A + 
Sbjct: 188 PDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRF 247

Query: 61  FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
           F EI    V  WN ++SGY   G+++KAL    +++ S +  D  ++ + ++   Q G  
Sbjct: 248 FEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQF 307

Query: 121 QLGMAIHSKIVKYSLERG--------VVIANCLIDMYGKCGSVEDAIGVFGEMI------ 166
           +       +  KY LE G        VV    LI    + G   +A+ VF +M+      
Sbjct: 308 E-------EASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKP 360

Query: 167 ----------------------------------DKDIISWNSVIAASARNGNLELAFGF 192
                                             D D++  NS++   A+  ++E+A   
Sbjct: 361 NSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRK 420

Query: 193 LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP----SPNSSSWNSILTGYVNRNRV 248
              +   D +S+N ++ G A  G  E+AI +LS M      P+  +WN ++TG+      
Sbjct: 421 FGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDG 480

Query: 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASAL 308
             AL  F  M S  +  +  T S  L+    +  L  G  IH  V++  ++ S  V SAL
Sbjct: 481 KAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSAL 540

Query: 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368
           + MYS C  +E+A S+F  L  +++V WN++I+  A++G     ++L  ++  + +++ +
Sbjct: 541 ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREM-NLSNVEVN 599

Query: 369 SVTFLNVLAACS 380
           +VT ++ L ACS
Sbjct: 600 TVTMVSALPACS 611



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 180/418 (43%), Gaps = 79/418 (18%)

Query: 1   PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFL-SNVFVSTALMGFYRKINSLADAHK 59
           PN   +   + A ++L    + +++H Y +K   L S++ V  +L+ +Y K  S+  A +
Sbjct: 360 PNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARR 419

Query: 60  MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD---------------- 103
            F  I Q  +VSWN++++GY   G + +A+ L  E++   I  D                
Sbjct: 420 KFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGD 479

Query: 104 -------------------AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144
                                + + ALAACGQ+ +L+LG  IH  +++  +E    + + 
Sbjct: 480 GKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSA 539

Query: 145 LIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR--------- 195
           LI MY  C S+E A  VF E+  +D++ WNS+I+A A++G    A   L           
Sbjct: 540 LISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVN 599

Query: 196 -------LP---------------------NPDTISY--NEVINGIAQFGDIEDAIMILS 225
                  LP                       DT ++  N +I+   + G I+ +  I  
Sbjct: 600 TVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFD 659

Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI--AGLSAL 283
            MP  +  SWN +++ Y       +A++LF + ++  +  +  TF+ +LS    +GL   
Sbjct: 660 LMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEE 719

Query: 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV-EIADSMFRSLCRKNLVTWNAMI 340
            W         +  +D ++   + ++D+ S+ GQ  E  + + +     N   W +++
Sbjct: 720 GWKYF-KMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLL 776



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 142/296 (47%), Gaps = 24/296 (8%)

Query: 99  EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDA 158
           EIYA      S L  C +L +L+LG  +H+++V   ++    + + L+++Y + G VEDA
Sbjct: 90  EIYA------SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDA 143

Query: 159 IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQF 214
             +F +M ++++ SW +++      G+ E      + + N    PD   + +V    ++ 
Sbjct: 144 RRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSEL 203

Query: 215 GDIEDAIMILSSMPS----PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270
            +      +   M S     NS    SIL  ++   R+  A   F E++ KDV    + +
Sbjct: 204 KNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDV----FMW 259

Query: 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL-- 328
           + M+SG          +   S +   G+    V  +A++  Y++ GQ E A   F  +  
Sbjct: 260 NIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGG 319

Query: 329 ---CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
               + N+V+W A+I G  +NG   + + +F ++  +  ++P+S+T  + ++AC++
Sbjct: 320 LKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKM-VLEGVKPNSITIASAVSACTN 374



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 113/245 (46%), Gaps = 12/245 (4%)

Query: 2   NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
           N   +   L A S L      +++H +I++ G  +  F+  +L+  Y +  S+  + ++F
Sbjct: 599 NTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIF 658

Query: 62  VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
             +PQ  +VSWN +IS Y   G    A+NLF +     +  +  +FT+ L+AC   G ++
Sbjct: 659 DLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIE 718

Query: 122 LGMAIHSKIVK--YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIA 178
            G   + K++K  Y+++  V    C++D+  + G   + +    +M  + +   W S++ 
Sbjct: 719 EGWK-YFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLG 777

Query: 179 ASARNGNLEL---AFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP-----SP 230
           A   + N +L   A  +L  L    + +Y  + N  +  G  EDA  I   M       P
Sbjct: 778 ACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKP 837

Query: 231 NSSSW 235
              SW
Sbjct: 838 PGCSW 842



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 2/142 (1%)

Query: 241 GYVNRNRV-PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
           G V+RN V   A  L   M   +       ++++L     L  L  G  +H+ ++  G+D
Sbjct: 62  GSVHRNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVD 121

Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
               + S LL++Y + G VE A  MF  +  +N+ +W A++  Y   GD  + I+LF  L
Sbjct: 122 VCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLF-YL 180

Query: 360 KTVRDLQPDSVTFLNVLAACSH 381
                ++PD   F  V  ACS 
Sbjct: 181 MVNEGVRPDHFVFPKVFKACSE 202


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.135    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,877,758,755
Number of Sequences: 23463169
Number of extensions: 313457826
Number of successful extensions: 932522
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9118
Number of HSP's successfully gapped in prelim test: 2687
Number of HSP's that attempted gapping in prelim test: 737365
Number of HSP's gapped (non-prelim): 59875
length of query: 525
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 378
effective length of database: 8,910,109,524
effective search space: 3368021400072
effective search space used: 3368021400072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)