BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048766
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
R PE L F + ++ P+ + + L I + +TWG + GL +
Sbjct: 195 QRQPEHLKNF-LISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNID 253
Query: 306 SALLDMYSKCGQ 317
A L ++SKCGQ
Sbjct: 254 DARLHVFSKCGQ 265
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
R PE L F + ++ P+ + + L I + +TWG + GL +
Sbjct: 195 QRQPEHLKNF-LISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNID 253
Query: 306 SALLDMYSKCGQ 317
A L ++SKCGQ
Sbjct: 254 DARLHVFSKCGQ 265
>pdb|2QFC|A Chain A, Crystal Structure Of Bacillus Thuringiensis Plcr Complexed
With Papr
pdb|2QFC|B Chain B, Crystal Structure Of Bacillus Thuringiensis Plcr Complexed
With Papr
pdb|3U3W|A Chain A, Crystal Structure Of Bacillus Thuringiensis Plcr In
Complex With The Peptide Papr7 And Dna
pdb|3U3W|B Chain B, Crystal Structure Of Bacillus Thuringiensis Plcr In
Complex With The Peptide Papr7 And Dna
Length = 293
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390
+NL NA+ YA NG L K I+LFEQ+ + D+ F +V +H + S
Sbjct: 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF-DVKVRYNHAKALYLD-S 210
Query: 391 EYFESMTKDYGIKPTVEHCCSM--IRLMG----QKGEVWR 424
Y ES+ Y + +E C + + L+G Q+GE R
Sbjct: 211 RYEESL---YQVNKAIEISCRINSMALIGQLYYQRGECLR 247
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
R PE L F + ++ P+ + + L I + +TWG + GL +
Sbjct: 192 QRQPEHLKNF-LISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNID 250
Query: 306 SALLDMYSKCG---QVEIADSMFR 326
A L ++SKCG Q E AD R
Sbjct: 251 DARLHVFSKCGHWAQWEHADEFNR 274
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
R PE L F + ++ P+ + + L I + +TWG + GL +
Sbjct: 195 QRQPEHLKNF-LISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNID 253
Query: 306 SALLDMYSKCG---QVEIADSMFR 326
A L ++SKCG Q E AD R
Sbjct: 254 DARLHVFSKCGHWAQWEHADEFNR 277
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
R PE L F + ++ P+ + + L I + +TWG + GL +
Sbjct: 195 QRQPEHLKNF-LISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNID 253
Query: 306 SALLDMYSKCG---QVEIADSMFR 326
A L ++SKCG Q E AD R
Sbjct: 254 DARLHVFSKCGHWAQWEHADEFNR 277
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305
R PE L F + ++ P+ + + L I + +TWG + GL +
Sbjct: 195 QRQPEHLKNF-LISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNID 253
Query: 306 SALLDMYSKCG---QVEIADSMFR 326
A L ++SKCG Q E AD R
Sbjct: 254 DARLHVFSKCGAWAQWEHADEFNR 277
>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
pdb|3OZ6|B Chain B, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
Length = 388
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 422 VWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNL 481
V R ++++LG G+YG+VW+++ +G + V +I A + + +M+
Sbjct: 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEV--VAVKKIFDAFQNSTDAQRTFREIMILTE 64
Query: 482 YTSHGN 487
+ H N
Sbjct: 65 LSGHEN 70
>pdb|1UGR|A Chain A, Crystal Structure Of At109s Mutant Of Co-Type Nitrile
Hydratase
Length = 203
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
R L + AC +L + + +++ +E + +V++C+L + + W V + N+ +E
Sbjct: 70 RLLADGTEACKELGIGGLQGEDMMWVENTDEVHHVVVCSLXSXY-PWPVLGLPPNWFKEP 128
Query: 502 GLR 504
R
Sbjct: 129 QYR 131
>pdb|1UGP|A Chain A, Crystal Structure Of Co-Type Nitrile Hydratase Complexed
With N-Butyric Acid
Length = 203
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
R L + AC +L + + +++ +E + +V++C L + + W V + N+ +E
Sbjct: 70 RLLADGTEACKELGIGGLQGEDMMWVENTDEVHHVVVCTLXSXY-PWPVLGLPPNWFKEP 128
Query: 502 GLR 504
R
Sbjct: 129 QYR 131
>pdb|1IRE|A Chain A, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudonocardia Thermophila
Length = 204
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
R L + AC +L + + +++ +E + +V++C L + + W V + N+ +E
Sbjct: 71 RLLADGTEACKELGIGGLQGEDMMWVENTDEVHHVVVCTLXSXY-PWPVLGLPPNWFKEP 129
Query: 502 GLR 504
R
Sbjct: 130 QYR 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,485,338
Number of Sequences: 62578
Number of extensions: 555576
Number of successful extensions: 1660
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1656
Number of HSP's gapped (non-prelim): 11
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)