Query 048766
Match_columns 525
No_of_seqs 583 out of 2641
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 12:57:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048766.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048766hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.8E-79 8.3E-84 632.0 58.1 518 1-522 150-741 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.3E-71 2.8E-76 562.5 50.0 481 36-522 85-578 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 8.9E-70 1.9E-74 562.2 55.4 500 1-507 84-625 (857)
4 PLN03218 maturation of RBCL 1; 100.0 4.7E-67 1E-71 531.3 57.2 503 1-508 368-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.2E-61 2.6E-66 491.9 49.6 459 1-468 404-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.1E-59 4.5E-64 473.8 45.5 420 1-432 121-554 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-33 3.1E-38 299.6 54.2 487 6-504 366-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-33 3E-38 299.6 53.6 486 4-500 398-899 (899)
9 PRK11447 cellulose synthase su 100.0 2.1E-25 4.5E-30 237.4 53.6 486 9-503 34-702 (1157)
10 PRK11447 cellulose synthase su 100.0 1.3E-24 2.9E-29 231.2 52.1 479 9-500 118-739 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 1.7E-25 3.6E-30 202.7 32.3 444 41-496 51-514 (966)
12 PRK09782 bacteriophage N4 rece 100.0 5.4E-23 1.2E-27 209.2 52.6 471 17-503 58-708 (987)
13 PRK09782 bacteriophage N4 rece 99.9 1.7E-21 3.7E-26 198.4 52.3 484 4-503 7-674 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 1.5E-23 3.3E-28 190.2 30.5 421 72-504 51-488 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 7.7E-22 1.7E-26 197.5 42.3 419 72-502 130-572 (615)
16 PRK11788 tetratricopeptide rep 99.9 2.5E-21 5.3E-26 184.5 28.7 297 212-517 46-363 (389)
17 PRK10049 pgaA outer membrane p 99.9 2.4E-20 5.1E-25 190.1 36.9 401 37-503 14-458 (765)
18 TIGR00990 3a0801s09 mitochondr 99.9 2E-19 4.4E-24 180.2 43.0 421 40-473 129-577 (615)
19 PRK15174 Vi polysaccharide exp 99.9 1.1E-19 2.4E-24 181.3 40.2 352 50-471 17-385 (656)
20 KOG2002 TPR-containing nuclear 99.9 8E-19 1.7E-23 168.0 38.4 433 67-503 268-747 (1018)
21 PRK15174 Vi polysaccharide exp 99.9 3.6E-19 7.8E-24 177.6 37.4 323 172-504 44-384 (656)
22 PRK10049 pgaA outer membrane p 99.9 1.7E-18 3.6E-23 176.7 42.8 414 5-476 17-465 (765)
23 KOG2002 TPR-containing nuclear 99.9 9.9E-19 2.1E-23 167.4 38.0 472 19-504 252-801 (1018)
24 PRK11788 tetratricopeptide rep 99.9 5.8E-20 1.3E-24 175.1 29.6 300 78-407 44-354 (389)
25 PRK14574 hmsH outer membrane p 99.9 3.2E-17 6.9E-22 164.1 44.8 426 44-474 40-520 (822)
26 PRK14574 hmsH outer membrane p 99.8 8.2E-17 1.8E-21 161.2 40.4 418 12-441 43-520 (822)
27 KOG0495 HAT repeat protein [RN 99.8 1.1E-15 2.5E-20 140.4 43.0 490 14-520 387-897 (913)
28 KOG2003 TPR repeat-containing 99.8 2.2E-17 4.8E-22 145.2 27.7 271 209-487 427-709 (840)
29 KOG4422 Uncharacterized conser 99.8 1.6E-15 3.4E-20 132.7 35.2 406 6-432 119-587 (625)
30 KOG2076 RNA polymerase III tra 99.8 2.3E-14 4.9E-19 137.1 40.4 466 15-484 151-786 (895)
31 KOG0547 Translocase of outer m 99.8 6E-15 1.3E-19 131.3 31.2 407 74-500 120-565 (606)
32 PF13429 TPR_15: Tetratricopep 99.8 3.8E-18 8.3E-23 153.7 10.6 258 237-500 13-276 (280)
33 KOG1915 Cell cycle control pro 99.8 1.5E-13 3.2E-18 122.1 38.4 451 37-500 72-584 (677)
34 KOG0495 HAT repeat protein [RN 99.7 3.6E-13 7.7E-18 124.3 41.7 462 8-482 411-895 (913)
35 KOG4422 Uncharacterized conser 99.7 2.2E-13 4.8E-18 119.5 37.2 424 69-508 116-597 (625)
36 KOG1915 Cell cycle control pro 99.7 5.9E-13 1.3E-17 118.3 38.8 472 16-498 86-622 (677)
37 KOG2076 RNA polymerase III tra 99.7 1E-12 2.2E-17 126.0 41.7 315 44-360 145-510 (895)
38 KOG1173 Anaphase-promoting com 99.7 1.4E-13 3.1E-18 125.0 30.8 474 6-501 19-518 (611)
39 KOG2003 TPR repeat-containing 99.7 2.8E-13 6.2E-18 119.7 31.4 258 240-503 427-691 (840)
40 PRK10747 putative protoheme IX 99.7 6.4E-14 1.4E-18 132.1 28.8 247 243-501 129-390 (398)
41 KOG1155 Anaphase-promoting com 99.7 3.3E-13 7.1E-18 119.7 30.7 327 168-501 162-495 (559)
42 PRK10747 putative protoheme IX 99.7 6E-13 1.3E-17 125.5 31.5 248 212-468 129-391 (398)
43 KOG1155 Anaphase-promoting com 99.6 1.1E-12 2.4E-17 116.4 29.8 357 134-501 159-536 (559)
44 KOG1126 DNA-binding cell divis 99.6 4.8E-14 1E-18 130.7 21.3 279 215-505 333-624 (638)
45 TIGR00540 hemY_coli hemY prote 99.6 1.3E-12 2.7E-17 124.1 31.1 251 209-499 126-397 (409)
46 TIGR00540 hemY_coli hemY prote 99.6 7.7E-13 1.7E-17 125.5 29.6 258 243-506 95-369 (409)
47 KOG1126 DNA-binding cell divis 99.6 5.3E-14 1.1E-18 130.4 19.8 275 184-470 333-623 (638)
48 PF13429 TPR_15: Tetratricopep 99.6 3.7E-15 8E-20 134.4 11.1 251 206-466 13-276 (280)
49 COG2956 Predicted N-acetylgluc 99.6 2.6E-12 5.5E-17 108.9 26.1 298 183-522 48-368 (389)
50 KOG0547 Translocase of outer m 99.6 4.2E-11 9.1E-16 107.3 33.9 410 43-469 120-568 (606)
51 KOG4318 Bicoid mRNA stability 99.6 3.4E-11 7.3E-16 115.3 33.1 455 24-506 11-599 (1088)
52 COG3071 HemY Uncharacterized e 99.5 2.1E-11 4.6E-16 106.7 27.8 284 183-500 97-389 (400)
53 COG3071 HemY Uncharacterized e 99.5 6.3E-11 1.4E-15 103.8 29.4 282 151-468 96-391 (400)
54 TIGR02521 type_IV_pilW type IV 99.5 6.2E-12 1.3E-16 110.8 23.6 199 300-501 29-232 (234)
55 KOG2376 Signal recognition par 99.5 1.7E-09 3.6E-14 99.5 38.1 451 9-496 18-515 (652)
56 COG2956 Predicted N-acetylgluc 99.5 5.9E-11 1.3E-15 100.8 26.4 269 82-381 48-327 (389)
57 KOG4318 Bicoid mRNA stability 99.5 2.3E-11 5.1E-16 116.4 26.6 271 234-506 493-813 (1088)
58 KOG2047 mRNA splicing factor [ 99.5 3.7E-09 8E-14 98.2 39.7 160 6-167 105-276 (835)
59 KOG4162 Predicted calmodulin-b 99.5 8.9E-10 1.9E-14 104.5 35.9 366 132-503 316-785 (799)
60 KOG1173 Anaphase-promoting com 99.5 3.1E-10 6.7E-15 103.7 31.3 279 200-484 243-535 (611)
61 KOG1174 Anaphase-promoting com 99.5 1.1E-09 2.3E-14 96.4 31.9 275 197-478 228-511 (564)
62 KOG1129 TPR repeat-containing 99.5 5.4E-12 1.2E-16 107.1 17.2 226 236-504 227-461 (478)
63 KOG3785 Uncharacterized conser 99.5 5.6E-10 1.2E-14 96.1 28.9 414 45-475 29-497 (557)
64 PRK12370 invasion protein regu 99.4 6.3E-11 1.4E-15 117.0 25.6 245 247-503 276-537 (553)
65 KOG2047 mRNA splicing factor [ 99.4 8.6E-08 1.9E-12 89.4 43.4 471 6-492 141-714 (835)
66 COG3063 PilF Tfp pilus assembl 99.4 2.6E-11 5.7E-16 98.2 16.8 162 335-503 37-204 (250)
67 PRK11189 lipoprotein NlpI; Pro 99.4 9.4E-11 2E-15 105.9 21.2 229 244-482 38-281 (296)
68 KOG1840 Kinesin light chain [C 99.4 1.6E-10 3.4E-15 108.7 22.4 231 269-500 201-478 (508)
69 KOG1174 Anaphase-promoting com 99.4 1.4E-08 3.1E-13 89.4 32.6 283 212-504 207-503 (564)
70 TIGR02521 type_IV_pilW type IV 99.4 3.5E-10 7.5E-15 99.6 22.9 163 303-468 66-233 (234)
71 PRK12370 invasion protein regu 99.4 3E-10 6.4E-15 112.2 24.2 211 281-501 275-502 (553)
72 KOG3785 Uncharacterized conser 99.3 2E-08 4.4E-13 86.8 30.5 381 11-409 65-497 (557)
73 PRK11189 lipoprotein NlpI; Pro 99.3 1.8E-09 3.9E-14 97.6 25.5 213 281-504 40-268 (296)
74 KOG2376 Signal recognition par 99.3 3.4E-08 7.3E-13 91.2 33.0 413 77-503 20-489 (652)
75 PF13041 PPR_2: PPR repeat fam 99.3 5.4E-12 1.2E-16 79.5 6.1 50 67-116 1-50 (50)
76 KOG4162 Predicted calmodulin-b 99.3 2E-08 4.4E-13 95.5 31.8 132 335-473 652-789 (799)
77 KOG1156 N-terminal acetyltrans 99.3 8.8E-08 1.9E-12 89.5 34.6 107 408-514 373-486 (700)
78 PF12569 NARP1: NMDA receptor- 99.3 2.7E-08 5.9E-13 95.1 32.5 429 45-497 11-516 (517)
79 KOG4340 Uncharacterized conser 99.3 1.9E-08 4.1E-13 84.8 27.1 409 71-503 12-445 (459)
80 COG3063 PilF Tfp pilus assembl 99.3 5.6E-09 1.2E-13 84.9 22.1 188 277-469 45-238 (250)
81 PF13041 PPR_2: PPR repeat fam 99.3 1.5E-11 3.3E-16 77.5 6.1 50 230-279 1-50 (50)
82 KOG3616 Selective LIM binding 99.2 1.5E-07 3.3E-12 89.2 33.9 331 143-502 619-1025(1636)
83 KOG1129 TPR repeat-containing 99.2 5.4E-10 1.2E-14 95.2 15.9 235 205-477 227-468 (478)
84 KOG0548 Molecular co-chaperone 99.2 8.9E-08 1.9E-12 87.6 30.0 441 11-495 10-483 (539)
85 KOG1156 N-terminal acetyltrans 99.2 1.1E-07 2.4E-12 88.9 30.6 378 116-503 19-436 (700)
86 KOG1840 Kinesin light chain [C 99.2 6.4E-09 1.4E-13 98.1 22.8 91 203-293 285-393 (508)
87 KOG1125 TPR repeat-containing 99.2 1.3E-09 2.8E-14 100.2 16.7 217 277-501 295-527 (579)
88 PF04733 Coatomer_E: Coatomer 99.2 2E-08 4.3E-13 89.4 23.6 226 237-474 40-272 (290)
89 KOG0548 Molecular co-chaperone 99.2 9.1E-08 2E-12 87.6 27.2 397 1-448 34-469 (539)
90 KOG3616 Selective LIM binding 99.2 4E-07 8.6E-12 86.4 32.1 348 109-496 737-1129(1636)
91 KOG1127 TPR repeat-containing 99.2 5.5E-08 1.2E-12 95.1 27.0 131 369-501 967-1104(1238)
92 KOG0624 dsRNA-activated protei 99.1 2.1E-07 4.5E-12 80.3 27.2 311 141-476 40-379 (504)
93 PF12569 NARP1: NMDA receptor- 99.1 1.6E-08 3.4E-13 96.7 22.7 256 241-503 13-293 (517)
94 PF04733 Coatomer_E: Coatomer 99.1 3.5E-09 7.5E-14 94.2 16.6 248 239-503 8-267 (290)
95 KOG3617 WD40 and TPR repeat-co 99.1 5.4E-07 1.2E-11 86.6 30.4 366 13-433 738-1172(1416)
96 KOG3617 WD40 and TPR repeat-co 99.1 5.6E-07 1.2E-11 86.5 30.0 384 68-497 725-1170(1416)
97 KOG0985 Vesicle coat protein c 99.1 1.2E-06 2.5E-11 86.2 32.2 328 7-358 842-1219(1666)
98 KOG1127 TPR repeat-containing 99.1 5E-07 1.1E-11 88.7 29.3 442 39-499 493-994 (1238)
99 cd05804 StaR_like StaR_like; a 99.0 8.4E-07 1.8E-11 83.5 29.5 260 240-502 51-337 (355)
100 KOG4340 Uncharacterized conser 99.0 3E-07 6.4E-12 77.8 22.9 314 40-360 12-373 (459)
101 TIGR03302 OM_YfiO outer membra 99.0 2.6E-08 5.6E-13 87.5 17.7 181 300-502 31-233 (235)
102 KOG0624 dsRNA-activated protei 99.0 1.5E-06 3.3E-11 75.2 26.7 192 36-229 36-251 (504)
103 PRK10370 formate-dependent nit 99.0 5.5E-08 1.2E-12 81.7 17.8 152 340-507 23-179 (198)
104 KOG0985 Vesicle coat protein c 99.0 3.4E-05 7.3E-10 76.4 38.2 139 333-494 1104-1242(1666)
105 KOG1125 TPR repeat-containing 99.0 4E-08 8.8E-13 90.6 17.7 249 240-494 293-564 (579)
106 KOG1070 rRNA processing protei 99.0 9.1E-08 2E-12 96.8 20.9 201 299-505 1455-1667(1710)
107 PRK15359 type III secretion sy 99.0 1.5E-08 3.2E-13 80.5 12.0 95 409-503 27-123 (144)
108 PRK04841 transcriptional regul 98.9 4E-06 8.7E-11 89.5 34.0 324 178-502 382-761 (903)
109 cd05804 StaR_like StaR_like; a 98.9 3.1E-06 6.7E-11 79.7 29.4 197 269-468 116-337 (355)
110 KOG1914 mRNA cleavage and poly 98.9 3.9E-05 8.6E-10 70.8 33.2 394 29-432 12-498 (656)
111 PRK15359 type III secretion sy 98.9 4.7E-08 1E-12 77.6 13.0 124 353-485 13-139 (144)
112 PRK04841 transcriptional regul 98.9 3.3E-05 7.2E-10 82.5 36.8 328 114-469 384-762 (903)
113 PLN02789 farnesyltranstransfer 98.8 3.3E-06 7.1E-11 76.4 24.1 211 282-499 52-300 (320)
114 COG5010 TadD Flp pilus assembl 98.8 4.5E-07 9.8E-12 75.8 16.9 151 339-495 72-225 (257)
115 KOG1128 Uncharacterized conser 98.7 2.1E-06 4.5E-11 81.8 19.7 193 299-500 395-615 (777)
116 PRK15179 Vi polysaccharide bio 98.7 2.3E-06 4.9E-11 85.4 20.9 138 332-476 85-226 (694)
117 PRK15363 pathogenicity island 98.7 2.1E-07 4.5E-12 72.4 10.4 98 405-502 34-133 (157)
118 KOG3060 Uncharacterized conser 98.7 1E-05 2.2E-10 67.3 20.2 171 304-479 54-232 (289)
119 TIGR03302 OM_YfiO outer membra 98.7 1.3E-06 2.7E-11 76.8 16.6 184 264-469 30-234 (235)
120 TIGR02552 LcrH_SycD type III s 98.7 3.5E-07 7.5E-12 72.4 11.6 98 406-503 17-116 (135)
121 KOG1128 Uncharacterized conser 98.7 8.6E-07 1.9E-11 84.3 15.8 225 239-484 405-635 (777)
122 COG4783 Putative Zn-dependent 98.7 2.2E-05 4.8E-10 71.7 23.8 117 379-498 316-434 (484)
123 PLN02789 farnesyltranstransfer 98.7 3.1E-06 6.6E-11 76.6 18.5 188 310-503 45-252 (320)
124 COG5010 TadD Flp pilus assembl 98.7 4.8E-06 1E-10 69.8 17.8 154 306-465 70-229 (257)
125 PRK14720 transcript cleavage f 98.6 1.5E-05 3.2E-10 80.6 23.8 155 302-490 116-273 (906)
126 KOG3081 Vesicle coat complex C 98.6 9.4E-05 2E-09 62.2 24.2 248 213-473 20-277 (299)
127 PRK10370 formate-dependent nit 98.6 5E-06 1.1E-10 69.9 17.4 153 309-475 23-181 (198)
128 PRK15179 Vi polysaccharide bio 98.6 1E-05 2.2E-10 80.8 22.3 129 298-432 82-214 (694)
129 KOG1914 mRNA cleavage and poly 98.6 0.00049 1.1E-08 63.9 34.5 394 67-469 18-503 (656)
130 PF12854 PPR_1: PPR repeat 98.6 7E-08 1.5E-12 54.3 4.0 34 32-65 1-34 (34)
131 KOG3060 Uncharacterized conser 98.6 9.6E-06 2.1E-10 67.4 17.6 165 335-505 54-224 (289)
132 KOG1070 rRNA processing protei 98.6 3E-05 6.4E-10 79.4 23.9 229 266-497 1457-1696(1710)
133 KOG3081 Vesicle coat complex C 98.6 2.2E-05 4.8E-10 65.8 19.1 245 239-501 15-271 (299)
134 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 3E-12 53.1 3.8 32 134-165 2-33 (34)
135 PRK14720 transcript cleavage f 98.5 3.7E-05 8E-10 77.8 22.7 81 268-361 117-197 (906)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 3.1E-06 6.6E-11 78.1 13.7 123 371-499 171-295 (395)
137 COG4783 Putative Zn-dependent 98.5 7.4E-05 1.6E-09 68.4 21.9 113 342-461 315-431 (484)
138 PF12895 Apc3: Anaphase-promot 98.5 4.8E-07 1E-11 64.4 6.7 79 419-498 2-84 (84)
139 PF13414 TPR_11: TPR repeat; P 98.5 6.4E-07 1.4E-11 61.1 7.0 66 437-502 2-68 (69)
140 TIGR02552 LcrH_SycD type III s 98.5 5E-06 1.1E-10 65.7 12.7 115 355-475 5-122 (135)
141 TIGR02795 tol_pal_ybgF tol-pal 98.4 5.4E-06 1.2E-10 63.9 12.1 98 407-504 3-108 (119)
142 PF13432 TPR_16: Tetratricopep 98.4 1E-06 2.2E-11 59.2 6.4 60 444-503 3-62 (65)
143 KOG0553 TPR repeat-containing 98.4 2.1E-06 4.5E-11 73.4 9.1 107 379-489 91-200 (304)
144 PF09976 TPR_21: Tetratricopep 98.4 9.2E-06 2E-10 64.9 12.6 124 372-498 15-144 (145)
145 cd00189 TPR Tetratricopeptide 98.4 4.3E-06 9.2E-11 61.5 9.9 95 408-502 2-98 (100)
146 COG4700 Uncharacterized protei 98.3 0.00013 2.8E-09 57.8 16.6 154 342-501 65-222 (251)
147 COG4235 Cytochrome c biogenesi 98.3 1.1E-05 2.4E-10 69.5 11.6 111 403-513 153-268 (287)
148 PLN03088 SGT1, suppressor of 98.3 1.2E-05 2.7E-10 74.5 12.2 107 375-485 8-117 (356)
149 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.6E-05 7.9E-10 71.1 14.6 128 301-435 168-297 (395)
150 PF09976 TPR_21: Tetratricopep 98.2 5.6E-05 1.2E-09 60.3 13.7 124 336-465 15-145 (145)
151 PRK02603 photosystem I assembl 98.2 2.3E-05 5.1E-10 64.7 11.8 98 406-503 35-151 (172)
152 KOG0550 Molecular chaperone (D 98.2 5.4E-05 1.2E-09 67.6 14.2 167 334-507 169-356 (486)
153 PF13432 TPR_16: Tetratricopep 98.2 9.3E-06 2E-10 54.5 7.2 61 412-472 3-65 (65)
154 TIGR02795 tol_pal_ybgF tol-pal 98.2 3E-05 6.6E-10 59.7 10.9 106 371-477 4-115 (119)
155 TIGR00756 PPR pentatricopeptid 98.2 3.7E-06 8E-11 48.2 4.3 33 71-103 2-34 (35)
156 PF13812 PPR_3: Pentatricopept 98.1 4.7E-06 1E-10 47.3 4.3 33 70-102 2-34 (34)
157 PF14559 TPR_19: Tetratricopep 98.1 4.8E-06 1E-10 56.6 4.8 55 449-503 2-56 (68)
158 PF13371 TPR_9: Tetratricopept 98.1 1.1E-05 2.3E-10 55.7 6.6 59 446-504 3-61 (73)
159 CHL00033 ycf3 photosystem I as 98.1 4.9E-05 1.1E-09 62.5 11.6 113 386-498 15-139 (168)
160 KOG2041 WD40 repeat protein [G 98.1 0.0076 1.6E-07 58.1 26.8 235 101-361 689-951 (1189)
161 TIGR00756 PPR pentatricopeptid 98.1 6.8E-06 1.5E-10 47.1 4.4 34 233-266 1-34 (35)
162 PF07079 DUF1347: Protein of u 98.1 0.0088 1.9E-07 54.7 34.9 190 302-498 298-521 (549)
163 KOG2053 Mitochondrial inherita 98.1 0.017 3.6E-07 57.6 43.2 208 15-228 21-253 (932)
164 PF13812 PPR_3: Pentatricopept 98.0 7.9E-06 1.7E-10 46.4 4.0 33 233-265 2-34 (34)
165 PRK10153 DNA-binding transcrip 98.0 0.00018 4E-09 69.8 15.4 141 329-472 333-487 (517)
166 COG5107 RNA14 Pre-mRNA 3'-end 98.0 0.011 2.3E-07 54.2 28.6 424 24-470 30-534 (660)
167 PLN03088 SGT1, suppressor of 98.0 9.5E-05 2.1E-09 68.7 12.9 94 340-440 9-105 (356)
168 PRK15331 chaperone protein Sic 98.0 6.4E-05 1.4E-09 59.0 9.3 90 411-500 42-133 (165)
169 KOG0553 TPR repeat-containing 98.0 3.9E-05 8.4E-10 65.8 8.6 90 413-502 88-179 (304)
170 PF05843 Suf: Suppressor of fo 98.0 0.00022 4.8E-09 63.8 14.0 134 334-472 2-141 (280)
171 COG3898 Uncharacterized membra 98.0 0.012 2.6E-07 52.8 24.7 282 204-501 85-392 (531)
172 PRK10803 tol-pal system protei 97.9 0.00012 2.6E-09 64.2 10.9 96 409-504 146-249 (263)
173 PF14559 TPR_19: Tetratricopep 97.9 2.6E-05 5.6E-10 52.9 5.4 64 417-480 2-67 (68)
174 KOG2053 Mitochondrial inherita 97.9 0.031 6.8E-07 55.8 34.6 114 50-167 21-142 (932)
175 PF12895 Apc3: Anaphase-promot 97.9 2.9E-05 6.2E-10 55.2 5.7 78 386-463 5-83 (84)
176 COG3898 Uncharacterized membra 97.9 0.016 3.5E-07 52.0 28.2 287 172-467 84-392 (531)
177 PF12688 TPR_5: Tetratrico pep 97.9 0.00031 6.8E-09 53.0 11.2 89 411-499 6-102 (120)
178 PF13431 TPR_17: Tetratricopep 97.9 1.2E-05 2.6E-10 45.2 2.6 34 460-493 1-34 (34)
179 KOG0550 Molecular chaperone (D 97.9 0.00068 1.5E-08 60.9 14.6 152 311-469 178-352 (486)
180 PRK10153 DNA-binding transcrip 97.8 0.00031 6.8E-09 68.2 13.2 137 365-505 333-486 (517)
181 PRK02603 photosystem I assembl 97.8 0.00055 1.2E-08 56.5 13.0 128 333-486 35-165 (172)
182 PF13414 TPR_11: TPR repeat; P 97.8 7.3E-05 1.6E-09 50.8 6.5 65 405-469 2-69 (69)
183 PF13428 TPR_14: Tetratricopep 97.8 5.7E-05 1.2E-09 45.7 4.8 42 439-480 2-43 (44)
184 PF14938 SNAP: Soluble NSF att 97.7 0.0028 6E-08 57.1 17.0 27 235-261 158-184 (282)
185 cd00189 TPR Tetratricopeptide 97.7 0.00023 4.9E-09 52.0 8.5 90 377-469 8-99 (100)
186 PRK15363 pathogenicity island 97.7 0.0011 2.3E-08 52.1 12.0 87 338-431 40-128 (157)
187 PF10037 MRP-S27: Mitochondria 97.7 0.0005 1.1E-08 64.0 11.9 95 71-165 68-164 (429)
188 PF01535 PPR: PPR repeat; Int 97.7 5.5E-05 1.2E-09 41.7 3.5 31 233-263 1-31 (31)
189 COG4700 Uncharacterized protei 97.7 0.0011 2.3E-08 52.8 11.6 104 401-504 84-192 (251)
190 PF01535 PPR: PPR repeat; Int 97.7 6.2E-05 1.4E-09 41.5 3.6 29 71-99 2-30 (31)
191 PF14938 SNAP: Soluble NSF att 97.7 0.0018 3.9E-08 58.3 14.8 149 308-469 100-268 (282)
192 KOG2041 WD40 repeat protein [G 97.7 0.06 1.3E-06 52.3 24.8 57 339-396 1027-1083(1189)
193 PF05843 Suf: Suppressor of fo 97.7 0.00042 9E-09 62.1 10.5 131 370-503 2-138 (280)
194 PF13371 TPR_9: Tetratricopept 97.7 0.00026 5.6E-09 48.7 7.2 66 413-478 2-69 (73)
195 PLN03098 LPA1 LOW PSII ACCUMUL 97.7 0.00024 5.2E-09 65.4 8.7 97 405-504 74-177 (453)
196 KOG1130 Predicted G-alpha GTPa 97.7 0.00053 1.1E-08 61.4 10.5 131 370-501 196-344 (639)
197 PF07079 DUF1347: Protein of u 97.6 0.05 1.1E-06 50.1 31.5 136 13-151 16-179 (549)
198 PRK10866 outer membrane biogen 97.6 0.011 2.3E-07 51.7 18.3 173 308-500 38-240 (243)
199 PF08579 RPM2: Mitochondrial r 97.6 0.00069 1.5E-08 49.1 8.9 79 73-151 29-116 (120)
200 PRK10803 tol-pal system protei 97.6 0.0017 3.8E-08 57.0 12.7 101 370-474 144-253 (263)
201 PF13424 TPR_12: Tetratricopep 97.6 0.00025 5.4E-09 49.6 6.0 63 438-500 5-74 (78)
202 PF13281 DUF4071: Domain of un 97.5 0.014 3E-07 53.4 18.2 160 307-471 146-338 (374)
203 CHL00033 ycf3 photosystem I as 97.5 0.002 4.3E-08 53.0 11.5 61 335-397 37-99 (168)
204 PF10037 MRP-S27: Mitochondria 97.5 0.0015 3.2E-08 61.0 11.1 119 34-152 62-186 (429)
205 KOG1538 Uncharacterized conser 97.5 0.032 7E-07 53.5 19.7 53 369-432 747-799 (1081)
206 PF13525 YfiO: Outer membrane 97.4 0.018 3.9E-07 48.9 16.9 176 308-492 11-198 (203)
207 PF12688 TPR_5: Tetratrico pep 97.4 0.007 1.5E-07 45.8 12.7 102 237-338 6-111 (120)
208 PF08579 RPM2: Mitochondrial r 97.4 0.0025 5.5E-08 46.3 9.6 79 236-314 29-116 (120)
209 KOG2796 Uncharacterized conser 97.4 0.032 6.9E-07 47.4 17.2 126 236-361 181-314 (366)
210 PF04840 Vps16_C: Vps16, C-ter 97.4 0.093 2E-06 47.7 25.3 79 177-257 184-262 (319)
211 KOG2796 Uncharacterized conser 97.4 0.014 3E-07 49.5 14.6 134 335-470 179-318 (366)
212 PF13512 TPR_18: Tetratricopep 97.3 0.0071 1.5E-07 46.6 11.8 95 409-503 13-130 (142)
213 KOG0543 FKBP-type peptidyl-pro 97.3 0.0048 1E-07 55.8 12.0 138 340-501 215-355 (397)
214 KOG1130 Predicted G-alpha GTPa 97.3 0.0011 2.5E-08 59.4 8.1 92 407-498 196-301 (639)
215 PF03704 BTAD: Bacterial trans 97.3 0.001 2.2E-08 53.2 7.3 70 440-509 64-138 (146)
216 KOG1258 mRNA processing protei 97.3 0.19 4.2E-06 48.2 27.6 181 300-486 295-489 (577)
217 PF04840 Vps16_C: Vps16, C-ter 97.2 0.16 3.4E-06 46.3 29.8 106 307-431 182-287 (319)
218 KOG1941 Acetylcholine receptor 97.2 0.01 2.2E-07 52.6 12.8 163 335-498 85-272 (518)
219 PF06239 ECSIT: Evolutionarily 97.2 0.0048 1E-07 50.9 10.1 88 67-154 45-153 (228)
220 PF13424 TPR_12: Tetratricopep 97.2 0.00099 2.1E-08 46.5 5.6 62 406-467 5-75 (78)
221 PRK11906 transcriptional regul 97.2 0.0083 1.8E-07 55.8 12.6 159 334-496 252-431 (458)
222 COG1729 Uncharacterized protei 97.1 0.0044 9.6E-08 53.2 9.7 89 416-504 151-247 (262)
223 PRK10866 outer membrane biogen 97.1 0.061 1.3E-06 47.0 16.4 57 75-133 38-98 (243)
224 KOG1538 Uncharacterized conser 97.1 0.12 2.7E-06 49.7 19.0 54 7-63 602-657 (1081)
225 PF13525 YfiO: Outer membrane 97.0 0.021 4.6E-07 48.5 13.1 52 452-503 104-172 (203)
226 KOG0543 FKBP-type peptidyl-pro 97.0 0.0043 9.2E-08 56.1 8.5 92 413-504 215-323 (397)
227 PF06239 ECSIT: Evolutionarily 97.0 0.0091 2E-07 49.3 9.6 89 229-317 44-153 (228)
228 KOG2280 Vacuolar assembly/sort 97.0 0.46 1E-05 47.0 34.3 331 133-495 426-793 (829)
229 COG4235 Cytochrome c biogenesi 96.9 0.036 7.9E-07 48.4 13.5 100 368-470 155-259 (287)
230 PF10300 DUF3808: Protein of u 96.9 0.046 1E-06 53.0 15.8 160 339-501 194-376 (468)
231 PRK11906 transcriptional regul 96.9 0.064 1.4E-06 50.1 15.3 120 386-505 274-405 (458)
232 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.012 2.6E-07 54.7 10.5 66 436-501 73-141 (453)
233 COG1729 Uncharacterized protei 96.8 0.013 2.7E-07 50.5 9.8 104 371-476 144-253 (262)
234 PRK11619 lytic murein transgly 96.8 0.67 1.5E-05 46.9 30.8 115 346-464 254-372 (644)
235 COG4105 ComL DNA uptake lipopr 96.8 0.27 5.8E-06 42.2 19.2 59 443-501 172-233 (254)
236 COG4785 NlpI Lipoprotein NlpI, 96.8 0.21 4.5E-06 41.4 15.9 179 314-501 77-266 (297)
237 KOG1585 Protein required for f 96.8 0.23 4.9E-06 42.0 16.2 87 408-495 152-250 (308)
238 PF13512 TPR_18: Tetratricopep 96.7 0.043 9.3E-07 42.4 11.2 21 454-474 115-135 (142)
239 KOG2114 Vacuolar assembly/sort 96.7 0.77 1.7E-05 46.1 28.7 177 41-229 337-518 (933)
240 KOG2280 Vacuolar assembly/sort 96.7 0.71 1.5E-05 45.7 29.2 352 79-462 399-794 (829)
241 COG3118 Thioredoxin domain-con 96.7 0.19 4E-06 44.0 16.0 168 320-492 121-292 (304)
242 PF13281 DUF4071: Domain of un 96.7 0.22 4.8E-06 45.9 17.1 90 206-295 146-254 (374)
243 PF07719 TPR_2: Tetratricopept 96.7 0.0051 1.1E-07 34.5 4.5 33 439-471 2-34 (34)
244 PF00515 TPR_1: Tetratricopept 96.5 0.0055 1.2E-07 34.4 3.9 32 439-470 2-33 (34)
245 KOG4555 TPR repeat-containing 96.4 0.054 1.2E-06 40.6 9.4 88 415-502 52-145 (175)
246 COG0457 NrfG FOG: TPR repeat [ 96.4 0.61 1.3E-05 40.5 26.3 192 303-501 60-265 (291)
247 KOG1258 mRNA processing protei 96.3 1.1 2.4E-05 43.4 28.6 181 200-383 296-489 (577)
248 PF03704 BTAD: Bacterial trans 96.3 0.09 1.9E-06 41.9 11.5 70 335-408 64-138 (146)
249 COG3118 Thioredoxin domain-con 96.3 0.21 4.6E-06 43.6 14.0 142 351-501 121-265 (304)
250 PF09205 DUF1955: Domain of un 96.3 0.33 7.2E-06 36.7 12.9 140 344-504 13-152 (161)
251 KOG4555 TPR repeat-containing 96.3 0.018 3.9E-07 43.0 6.2 57 445-501 50-106 (175)
252 KOG4234 TPR repeat-containing 96.1 0.039 8.4E-07 44.8 8.0 101 378-481 104-211 (271)
253 PF12921 ATP13: Mitochondrial 96.1 0.067 1.5E-06 41.0 9.0 49 365-414 48-96 (126)
254 PF04184 ST7: ST7 protein; In 96.1 0.13 2.7E-06 48.4 12.2 56 410-465 263-322 (539)
255 PRK15331 chaperone protein Sic 96.0 0.073 1.6E-06 42.2 9.0 84 343-432 47-131 (165)
256 PRK09687 putative lyase; Provi 96.0 1.1 2.3E-05 40.2 25.2 136 332-482 141-277 (280)
257 smart00299 CLH Clathrin heavy 96.0 0.58 1.2E-05 36.9 14.4 87 5-95 9-95 (140)
258 KOG0890 Protein kinase of the 96.0 4.1 8.9E-05 46.4 31.9 318 175-504 1388-1734(2382)
259 COG0457 NrfG FOG: TPR repeat [ 95.9 1.1 2.3E-05 38.9 24.9 219 246-470 37-268 (291)
260 KOG1586 Protein required for f 95.8 1 2.2E-05 38.0 15.9 19 450-468 166-184 (288)
261 PF13181 TPR_8: Tetratricopept 95.6 0.032 7E-07 31.1 4.2 31 440-470 3-33 (34)
262 PF04053 Coatomer_WDAD: Coatom 95.6 0.9 1.9E-05 43.6 16.0 77 210-297 327-403 (443)
263 PF10300 DUF3808: Protein of u 95.6 0.8 1.7E-05 44.6 16.0 116 347-466 247-375 (468)
264 KOG2610 Uncharacterized conser 95.5 0.18 4E-06 44.6 10.3 162 344-510 114-285 (491)
265 PF02259 FAT: FAT domain; Int 95.5 2.1 4.6E-05 40.1 20.3 149 332-485 145-305 (352)
266 PF13428 TPR_14: Tetratricopep 95.4 0.037 8.1E-07 33.2 4.1 33 472-504 1-33 (44)
267 COG5107 RNA14 Pre-mRNA 3'-end 95.3 2.4 5.3E-05 39.6 33.0 129 370-501 398-531 (660)
268 KOG3941 Intermediate in Toll s 95.3 0.15 3.3E-06 43.9 8.9 98 58-155 54-174 (406)
269 PF04053 Coatomer_WDAD: Coatom 95.3 0.33 7.1E-06 46.5 12.2 158 12-196 270-428 (443)
270 PF12921 ATP13: Mitochondrial 95.3 0.22 4.7E-06 38.2 9.0 93 333-448 2-98 (126)
271 PF13176 TPR_7: Tetratricopept 95.3 0.04 8.6E-07 31.3 3.8 26 474-499 1-26 (36)
272 COG4785 NlpI Lipoprotein NlpI, 95.2 1.6 3.5E-05 36.4 14.7 182 299-489 96-292 (297)
273 KOG1941 Acetylcholine receptor 95.1 1.2 2.5E-05 40.2 13.9 128 338-466 127-274 (518)
274 PF07035 Mic1: Colon cancer-as 95.1 1.4 3.1E-05 35.5 14.8 32 90-121 15-46 (167)
275 PF07035 Mic1: Colon cancer-as 95.1 1.5 3.2E-05 35.4 13.4 134 125-262 15-150 (167)
276 PF13176 TPR_7: Tetratricopept 95.0 0.06 1.3E-06 30.6 4.1 29 440-468 1-29 (36)
277 PF04184 ST7: ST7 protein; In 95.0 2.5 5.4E-05 40.2 16.2 63 369-432 259-321 (539)
278 COG3629 DnrI DNA-binding trans 94.9 0.15 3.3E-06 44.8 8.1 62 439-500 154-215 (280)
279 PF09205 DUF1955: Domain of un 94.9 0.86 1.9E-05 34.6 10.6 119 13-135 12-151 (161)
280 KOG2114 Vacuolar assembly/sort 94.8 3.7 8.1E-05 41.6 17.7 137 14-167 379-518 (933)
281 PF09613 HrpB1_HrpK: Bacterial 94.8 1.1 2.3E-05 35.7 11.7 94 380-478 21-116 (160)
282 PF07719 TPR_2: Tetratricopept 94.7 0.081 1.8E-06 29.4 4.1 32 472-503 1-32 (34)
283 PRK09687 putative lyase; Provi 94.7 3.1 6.8E-05 37.3 24.9 59 37-95 36-98 (280)
284 PF09613 HrpB1_HrpK: Bacterial 94.5 0.27 5.7E-06 39.0 7.8 81 408-488 9-94 (160)
285 PF00637 Clathrin: Region in C 94.5 0.018 4E-07 45.7 1.4 84 110-196 13-96 (143)
286 PF08631 SPO22: Meiosis protei 94.5 3.5 7.7E-05 37.0 22.9 60 269-329 86-148 (278)
287 COG1747 Uncharacterized N-term 94.5 4.7 0.0001 38.4 23.1 177 299-484 63-251 (711)
288 PF14853 Fis1_TPR_C: Fis1 C-te 94.4 0.12 2.5E-06 32.4 4.5 36 441-476 4-39 (53)
289 PF00637 Clathrin: Region in C 94.4 0.0076 1.7E-07 48.0 -1.0 86 8-96 12-97 (143)
290 KOG3941 Intermediate in Toll s 94.3 0.48 1E-05 41.0 9.3 108 221-328 54-185 (406)
291 TIGR02561 HrpB1_HrpK type III 94.3 0.25 5.3E-06 38.4 6.9 70 418-487 22-93 (153)
292 COG4649 Uncharacterized protei 94.3 1.5 3.3E-05 35.1 11.2 119 343-466 68-195 (221)
293 COG4105 ComL DNA uptake lipopr 94.3 3.3 7.1E-05 35.8 18.1 160 312-472 44-238 (254)
294 smart00299 CLH Clathrin heavy 94.2 2.2 4.8E-05 33.5 15.5 45 72-117 10-54 (140)
295 KOG2066 Vacuolar assembly/sort 94.0 7.6 0.00017 39.1 25.1 118 141-259 394-532 (846)
296 PF00515 TPR_1: Tetratricopept 94.0 0.15 3.2E-06 28.4 4.1 32 472-503 1-32 (34)
297 PF08631 SPO22: Meiosis protei 94.0 4.5 9.7E-05 36.4 23.6 19 479-497 253-271 (278)
298 PF02259 FAT: FAT domain; Int 94.0 2.2 4.7E-05 40.1 14.5 70 435-504 143-216 (352)
299 KOG1920 IkappaB kinase complex 93.9 10 0.00022 40.3 22.6 30 35-65 788-819 (1265)
300 KOG4648 Uncharacterized conser 93.7 0.26 5.6E-06 43.8 6.9 93 379-475 107-202 (536)
301 PF13174 TPR_6: Tetratricopept 93.7 0.14 2.9E-06 28.2 3.7 30 474-503 2-31 (33)
302 COG2909 MalT ATP-dependent tra 93.6 7.4 0.00016 40.0 17.3 191 312-507 425-653 (894)
303 PF13174 TPR_6: Tetratricopept 93.5 0.13 2.7E-06 28.3 3.2 31 441-471 3-33 (33)
304 COG2976 Uncharacterized protei 93.3 0.57 1.2E-05 38.3 7.7 87 377-468 97-189 (207)
305 PRK15180 Vi polysaccharide bio 93.3 1.1 2.3E-05 42.0 10.4 127 381-510 301-429 (831)
306 PF06552 TOM20_plant: Plant sp 93.3 0.44 9.5E-06 38.4 7.0 33 454-486 51-83 (186)
307 PF10602 RPN7: 26S proteasome 93.1 1 2.2E-05 37.1 9.2 92 407-498 37-139 (177)
308 KOG1585 Protein required for f 93.0 4.3 9.3E-05 34.7 12.5 58 441-498 153-216 (308)
309 COG3947 Response regulator con 93.0 6 0.00013 34.8 15.3 60 441-500 282-341 (361)
310 KOG4234 TPR repeat-containing 92.8 2.3 5E-05 35.0 10.3 85 341-432 103-194 (271)
311 PF07721 TPR_4: Tetratricopept 92.8 0.17 3.6E-06 26.2 2.7 24 473-496 2-25 (26)
312 KOG4648 Uncharacterized conser 92.7 0.37 8.1E-06 42.9 6.3 90 413-502 104-195 (536)
313 PF14561 TPR_20: Tetratricopep 92.5 0.54 1.2E-05 33.5 6.0 52 437-488 21-74 (90)
314 PRK10941 hypothetical protein; 92.5 0.84 1.8E-05 40.4 8.4 64 441-504 184-247 (269)
315 PF13170 DUF4003: Protein of u 92.5 3.8 8.3E-05 37.0 12.7 134 19-154 78-232 (297)
316 KOG4570 Uncharacterized conser 92.2 0.84 1.8E-05 40.3 7.7 97 35-133 61-164 (418)
317 KOG3364 Membrane protein invol 92.1 0.75 1.6E-05 35.0 6.4 73 403-475 29-108 (149)
318 TIGR02561 HrpB1_HrpK type III 92.1 4.4 9.5E-05 31.8 10.6 54 12-66 19-72 (153)
319 PF13374 TPR_10: Tetratricopep 92.0 0.36 7.8E-06 28.2 4.0 26 441-466 5-30 (42)
320 COG3629 DnrI DNA-binding trans 91.8 1.6 3.4E-05 38.6 9.2 57 336-396 156-213 (280)
321 KOG1586 Protein required for f 91.8 7.4 0.00016 33.1 13.6 14 151-164 26-39 (288)
322 PF13431 TPR_17: Tetratricopep 91.8 0.27 5.9E-06 27.4 3.0 32 26-58 2-33 (34)
323 PRK15180 Vi polysaccharide bio 91.7 12 0.00026 35.5 27.3 90 418-507 710-811 (831)
324 KOG2396 HAT (Half-A-TPR) repea 91.7 13 0.00028 35.6 29.1 88 375-466 466-558 (568)
325 COG4649 Uncharacterized protei 91.7 6.1 0.00013 31.9 14.6 25 475-499 170-194 (221)
326 TIGR02508 type_III_yscG type I 91.5 3.9 8.5E-05 29.3 9.0 87 18-108 20-106 (115)
327 PF13374 TPR_10: Tetratricopep 91.4 0.43 9.4E-06 27.9 4.0 29 473-501 3-31 (42)
328 PF13181 TPR_8: Tetratricopept 91.3 0.56 1.2E-05 25.9 4.1 30 473-502 2-31 (34)
329 KOG0545 Aryl-hydrocarbon recep 91.1 3.1 6.6E-05 35.5 9.6 91 413-503 185-295 (329)
330 PRK13800 putative oxidoreducta 90.8 27 0.00058 37.7 27.3 185 300-500 696-880 (897)
331 PF11207 DUF2989: Protein of u 90.4 2.3 5E-05 35.3 8.2 74 418-492 119-198 (203)
332 PF06552 TOM20_plant: Plant sp 90.3 1.1 2.4E-05 36.2 6.2 74 424-504 53-139 (186)
333 PF09986 DUF2225: Uncharacteri 90.2 3.5 7.5E-05 35.2 9.6 89 418-506 89-199 (214)
334 smart00028 TPR Tetratricopepti 90.1 0.49 1.1E-05 25.2 3.2 28 442-469 5-32 (34)
335 KOG1464 COP9 signalosome, subu 90.0 12 0.00027 32.5 14.6 165 236-410 149-341 (440)
336 KOG2610 Uncharacterized conser 89.9 15 0.00032 33.2 17.9 150 244-396 115-273 (491)
337 KOG1550 Extracellular protein 89.6 25 0.00053 35.4 24.3 274 217-502 228-539 (552)
338 KOG1308 Hsp70-interacting prot 89.5 0.13 2.9E-06 45.6 0.6 91 418-508 126-218 (377)
339 KOG2471 TPR repeat-containing 89.3 21 0.00045 34.2 14.2 121 342-485 249-382 (696)
340 PF10602 RPN7: 26S proteasome 89.3 4.1 9E-05 33.6 9.2 62 71-132 38-101 (177)
341 KOG1550 Extracellular protein 89.3 8.8 0.00019 38.5 13.1 180 317-506 227-431 (552)
342 TIGR03504 FimV_Cterm FimV C-te 89.1 0.68 1.5E-05 27.6 3.2 26 477-502 4-29 (44)
343 PRK12798 chemotaxis protein; R 88.8 21 0.00046 33.5 20.7 181 315-499 125-322 (421)
344 KOG4642 Chaperone-dependent E3 88.6 2 4.4E-05 36.4 6.7 78 386-466 26-106 (284)
345 PF13170 DUF4003: Protein of u 88.4 19 0.00041 32.6 16.1 135 284-422 79-233 (297)
346 COG4455 ImpE Protein of avirul 87.8 2.1 4.5E-05 35.8 6.3 62 410-471 5-68 (273)
347 PF02284 COX5A: Cytochrome c o 87.5 3.9 8.4E-05 29.5 6.6 59 87-146 28-86 (108)
348 TIGR02508 type_III_yscG type I 87.0 9.4 0.0002 27.5 9.5 87 283-374 21-107 (115)
349 cd00923 Cyt_c_Oxidase_Va Cytoc 86.9 4.2 9.1E-05 29.0 6.4 45 87-131 25-69 (103)
350 KOG0276 Vesicle coat complex C 86.8 11 0.00024 36.9 11.1 125 151-297 598-722 (794)
351 smart00386 HAT HAT (Half-A-TPR 86.5 2.2 4.7E-05 23.0 4.3 30 452-481 1-30 (33)
352 PF10345 Cohesin_load: Cohesin 86.4 42 0.0009 34.4 33.4 50 451-500 547-605 (608)
353 PF13762 MNE1: Mitochondrial s 86.3 14 0.00031 29.0 11.1 78 40-117 41-128 (145)
354 COG5159 RPN6 26S proteasome re 86.2 16 0.00035 32.1 10.9 24 477-500 130-153 (421)
355 PF07721 TPR_4: Tetratricopept 85.9 1.3 2.9E-05 22.7 2.9 20 411-430 6-25 (26)
356 KOG4507 Uncharacterized conser 85.9 3.1 6.7E-05 40.3 7.1 96 382-481 620-719 (886)
357 KOG0890 Protein kinase of the 85.8 80 0.0017 37.1 27.3 306 144-468 1388-1732(2382)
358 PRK11619 lytic murein transgly 85.4 47 0.001 34.1 38.1 248 245-506 254-510 (644)
359 KOG1920 IkappaB kinase complex 85.4 59 0.0013 35.1 27.2 140 308-465 914-1053(1265)
360 PF04097 Nic96: Nup93/Nic96; 85.1 48 0.001 33.9 19.6 21 482-505 515-535 (613)
361 cd00923 Cyt_c_Oxidase_Va Cytoc 84.9 8.4 0.00018 27.6 7.1 55 424-478 25-82 (103)
362 PF11207 DUF2989: Protein of u 84.9 11 0.00025 31.3 9.1 76 379-458 117-198 (203)
363 KOG2066 Vacuolar assembly/sort 84.6 50 0.0011 33.8 25.3 168 146-333 363-536 (846)
364 KOG4279 Serine/threonine prote 84.5 22 0.00047 36.0 12.1 103 343-471 297-399 (1226)
365 PF04190 DUF410: Protein of un 84.5 29 0.00062 30.8 13.1 105 50-165 2-116 (260)
366 PRK13800 putative oxidoreducta 84.4 65 0.0014 34.8 28.7 269 191-482 625-894 (897)
367 smart00028 TPR Tetratricopepti 84.4 2.1 4.6E-05 22.4 3.7 29 473-501 2-30 (34)
368 KOG0551 Hsp90 co-chaperone CNS 84.3 19 0.00041 32.6 10.6 92 407-498 82-179 (390)
369 PF14863 Alkyl_sulf_dimr: Alky 83.4 8.6 0.00019 30.1 7.6 66 422-490 57-122 (141)
370 COG4976 Predicted methyltransf 83.4 2.2 4.8E-05 35.9 4.5 57 416-472 5-63 (287)
371 PF12862 Apc5: Anaphase-promot 83.0 4.7 0.0001 29.1 5.7 52 449-500 9-69 (94)
372 cd00280 TRFH Telomeric Repeat 82.8 14 0.00031 30.1 8.6 47 445-492 118-164 (200)
373 PRK10941 hypothetical protein; 82.7 8.5 0.00018 34.2 8.2 68 409-476 184-253 (269)
374 COG2976 Uncharacterized protei 82.6 27 0.00058 29.0 16.8 91 411-502 94-189 (207)
375 PF02284 COX5A: Cytochrome c o 82.4 12 0.00027 27.1 7.2 55 424-478 28-85 (108)
376 PF10579 Rapsyn_N: Rapsyn N-te 82.2 4.9 0.00011 27.5 5.0 46 450-495 18-66 (80)
377 KOG0276 Vesicle coat complex C 81.7 17 0.00037 35.7 10.1 132 40-196 616-747 (794)
378 COG0790 FOG: TPR repeat, SEL1 81.6 41 0.00088 30.5 19.5 78 424-504 173-269 (292)
379 KOG4507 Uncharacterized conser 81.2 9.1 0.0002 37.3 8.1 91 413-503 613-707 (886)
380 COG2909 MalT ATP-dependent tra 80.8 77 0.0017 33.1 23.3 217 277-497 425-684 (894)
381 KOG3824 Huntingtin interacting 80.7 3.4 7.3E-05 36.5 4.9 59 418-476 128-188 (472)
382 COG1747 Uncharacterized N-term 80.2 60 0.0013 31.5 21.4 160 264-432 63-231 (711)
383 COG4941 Predicted RNA polymera 80.1 42 0.0009 30.5 11.2 121 348-474 271-401 (415)
384 KOG4642 Chaperone-dependent E3 80.1 38 0.00083 29.2 10.5 111 343-460 20-139 (284)
385 PF07163 Pex26: Pex26 protein; 79.8 23 0.00049 31.3 9.3 87 239-325 90-181 (309)
386 KOG0376 Serine-threonine phosp 79.8 2.4 5.3E-05 40.0 4.0 98 376-477 11-111 (476)
387 PF12862 Apc5: Anaphase-promot 79.2 18 0.0004 25.9 7.7 52 417-468 9-71 (94)
388 PF09477 Type_III_YscG: Bacter 79.1 23 0.00049 26.0 10.4 87 17-107 20-106 (116)
389 TIGR03504 FimV_Cterm FimV C-te 78.5 4.7 0.0001 24.0 3.6 26 237-262 4-29 (44)
390 cd08819 CARD_MDA5_2 Caspase ac 77.9 13 0.00027 26.1 6.0 65 123-189 21-85 (88)
391 PF07720 TPR_3: Tetratricopept 77.7 8.7 0.00019 21.7 4.4 29 441-469 4-34 (36)
392 PF09477 Type_III_YscG: Bacter 77.5 26 0.00056 25.8 9.6 87 282-373 21-107 (116)
393 KOG3364 Membrane protein invol 77.1 15 0.00033 28.3 6.7 69 435-503 29-102 (149)
394 COG4976 Predicted methyltransf 77.0 4.2 9.1E-05 34.4 4.1 55 379-437 5-61 (287)
395 KOG2300 Uncharacterized conser 76.9 74 0.0016 30.7 29.0 151 344-496 334-509 (629)
396 KOG1464 COP9 signalosome, subu 76.7 52 0.0011 28.9 15.5 240 215-462 41-327 (440)
397 COG4455 ImpE Protein of avirul 76.4 47 0.001 28.2 10.0 72 337-415 5-81 (273)
398 PF13929 mRNA_stabil: mRNA sta 75.9 58 0.0013 29.1 15.4 184 288-486 98-292 (292)
399 PF04190 DUF410: Protein of un 75.3 60 0.0013 28.9 15.4 81 405-501 89-170 (260)
400 PF11846 DUF3366: Domain of un 74.1 8.9 0.00019 32.2 5.7 37 433-469 139-175 (193)
401 PF07163 Pex26: Pex26 protein; 73.8 42 0.00092 29.7 9.4 86 75-162 89-181 (309)
402 PF09986 DUF2225: Uncharacteri 73.3 55 0.0012 28.0 10.1 83 386-468 93-195 (214)
403 KOG2063 Vacuolar assembly/sort 73.3 1.3E+02 0.0029 31.9 17.3 27 40-66 506-532 (877)
404 COG5191 Uncharacterized conser 72.1 11 0.00023 33.6 5.6 81 401-481 102-185 (435)
405 COG2912 Uncharacterized conser 71.8 16 0.00034 32.1 6.5 62 443-504 186-247 (269)
406 PF14561 TPR_20: Tetratricopep 71.7 34 0.00073 24.4 8.7 44 458-501 8-51 (90)
407 KOG4570 Uncharacterized conser 71.5 26 0.00055 31.5 7.7 100 67-168 62-164 (418)
408 KOG1498 26S proteasome regulat 70.9 92 0.002 29.1 14.2 191 297-513 47-253 (439)
409 KOG0376 Serine-threonine phosp 70.0 7.9 0.00017 36.7 4.6 102 340-448 11-115 (476)
410 KOG4077 Cytochrome c oxidase, 69.3 25 0.00054 26.7 6.1 43 90-132 70-112 (149)
411 PF11846 DUF3366: Domain of un 69.1 24 0.00052 29.6 7.2 32 401-432 139-170 (193)
412 cd08819 CARD_MDA5_2 Caspase ac 68.9 38 0.00082 23.9 6.7 65 22-88 21-85 (88)
413 PF04910 Tcf25: Transcriptiona 68.9 1E+02 0.0023 29.0 15.4 55 340-397 110-166 (360)
414 PF14853 Fis1_TPR_C: Fis1 C-te 68.4 19 0.0004 22.6 4.7 33 339-374 7-39 (53)
415 PF08311 Mad3_BUB1_I: Mad3/BUB 67.4 47 0.001 25.5 7.8 42 456-497 81-124 (126)
416 PF13762 MNE1: Mitochondrial s 67.3 60 0.0013 25.6 8.4 82 71-152 41-128 (145)
417 PF04097 Nic96: Nup93/Nic96; 67.1 1.6E+02 0.0034 30.3 23.8 85 177-261 265-356 (613)
418 PF08424 NRDE-2: NRDE-2, neces 66.3 1.1E+02 0.0024 28.3 13.4 143 349-505 47-213 (321)
419 PHA02537 M terminase endonucle 64.8 93 0.002 26.9 10.4 106 343-469 93-209 (230)
420 KOG4077 Cytochrome c oxidase, 63.8 61 0.0013 24.7 7.2 45 251-295 68-112 (149)
421 COG3947 Response regulator con 63.0 19 0.00041 31.9 5.2 66 40-105 281-354 (361)
422 PF00244 14-3-3: 14-3-3 protei 62.7 86 0.0019 27.4 9.4 50 454-503 142-200 (236)
423 KOG4814 Uncharacterized conser 62.6 70 0.0015 32.0 9.3 88 416-503 364-459 (872)
424 PF10366 Vps39_1: Vacuolar sor 62.6 62 0.0013 24.1 7.7 27 335-361 41-67 (108)
425 KOG1308 Hsp70-interacting prot 62.3 15 0.00032 33.4 4.6 110 386-498 130-241 (377)
426 KOG3807 Predicted membrane pro 61.4 83 0.0018 28.6 8.9 152 318-478 232-402 (556)
427 PF09670 Cas_Cas02710: CRISPR- 61.4 1.2E+02 0.0027 28.8 10.9 16 314-329 143-158 (379)
428 PF10366 Vps39_1: Vacuolar sor 61.3 55 0.0012 24.3 6.9 40 216-260 28-67 (108)
429 PF11663 Toxin_YhaV: Toxin wit 61.2 11 0.00024 28.9 3.2 32 81-114 107-138 (140)
430 PF04781 DUF627: Protein of un 60.5 68 0.0015 23.9 7.5 39 456-494 62-100 (111)
431 cd00280 TRFH Telomeric Repeat 60.3 56 0.0012 26.9 7.0 22 76-97 118-139 (200)
432 PF10579 Rapsyn_N: Rapsyn N-te 59.4 15 0.00032 25.2 3.2 13 386-398 22-34 (80)
433 KOG3824 Huntingtin interacting 59.3 16 0.00035 32.5 4.3 45 451-495 129-173 (472)
434 COG5187 RPN7 26S proteasome re 59.2 71 0.0015 28.4 7.9 106 393-498 102-218 (412)
435 KOG2581 26S proteasome regulat 58.3 1.7E+02 0.0036 27.7 10.9 61 409-469 212-278 (493)
436 PF14689 SPOB_a: Sensor_kinase 57.5 42 0.00091 21.8 5.1 24 442-465 27-50 (62)
437 PF02184 HAT: HAT (Half-A-TPR) 57.5 30 0.00065 19.0 3.5 27 453-480 2-28 (32)
438 PF13934 ELYS: Nuclear pore co 57.2 1.3E+02 0.0028 26.1 11.6 33 417-449 151-183 (226)
439 COG0735 Fur Fe2+/Zn2+ uptake r 56.9 57 0.0012 25.8 6.7 63 90-153 7-69 (145)
440 PF10255 Paf67: RNA polymerase 56.6 51 0.0011 31.3 7.3 52 175-226 127-189 (404)
441 PF13934 ELYS: Nuclear pore co 55.6 1.4E+02 0.003 25.9 12.9 119 351-483 64-183 (226)
442 KOG2063 Vacuolar assembly/sort 55.2 2.9E+02 0.0063 29.5 17.7 27 71-97 506-532 (877)
443 PRK12798 chemotaxis protein; R 54.4 2E+02 0.0043 27.4 19.0 185 311-502 90-287 (421)
444 TIGR02270 conserved hypothetic 53.4 2.2E+02 0.0047 27.5 24.1 172 76-257 45-216 (410)
445 PF11848 DUF3368: Domain of un 53.0 43 0.00094 20.4 4.3 38 10-47 9-46 (48)
446 KOG2659 LisH motif-containing 52.7 1.5E+02 0.0033 25.5 11.3 55 375-431 70-128 (228)
447 PF12968 DUF3856: Domain of Un 52.7 1E+02 0.0022 23.4 9.8 60 439-498 56-126 (144)
448 PF11848 DUF3368: Domain of un 52.5 52 0.0011 20.0 4.8 31 81-111 14-44 (48)
449 KOG0292 Vesicle coat complex C 51.9 1.7E+02 0.0037 30.8 10.3 130 311-466 652-781 (1202)
450 KOG2422 Uncharacterized conser 51.8 1.2E+02 0.0025 30.1 8.8 89 8-96 347-446 (665)
451 PRK10564 maltose regulon perip 50.9 31 0.00066 30.9 4.7 36 72-107 260-295 (303)
452 cd08326 CARD_CASP9 Caspase act 50.6 54 0.0012 23.0 5.0 62 123-188 18-79 (84)
453 PF09670 Cas_Cas02710: CRISPR- 50.5 2.3E+02 0.005 27.0 11.8 55 241-296 140-198 (379)
454 PF06957 COPI_C: Coatomer (COP 50.5 2.4E+02 0.0052 27.2 11.8 39 433-471 293-333 (422)
455 smart00777 Mad3_BUB1_I Mad3/BU 50.3 1.1E+02 0.0025 23.4 7.8 40 457-496 82-123 (125)
456 KOG0292 Vesicle coat complex C 50.3 32 0.0007 35.6 5.2 47 417-466 654-700 (1202)
457 KOG2034 Vacuolar sorting prote 50.2 3.4E+02 0.0073 28.8 24.0 53 44-96 364-416 (911)
458 PF14689 SPOB_a: Sensor_kinase 50.0 30 0.00065 22.5 3.5 28 405-432 22-49 (62)
459 KOG2581 26S proteasome regulat 49.7 2E+02 0.0042 27.3 9.5 96 409-504 172-279 (493)
460 PF11817 Foie-gras_1: Foie gra 49.7 99 0.0022 27.2 7.8 55 443-497 183-243 (247)
461 COG5159 RPN6 26S proteasome re 49.6 1.9E+02 0.0042 25.8 15.9 33 238-270 9-41 (421)
462 KOG2908 26S proteasome regulat 49.4 90 0.0019 28.6 7.2 85 75-159 81-177 (380)
463 KOG1839 Uncharacterized protei 49.0 1.1E+02 0.0024 33.6 9.0 122 378-501 941-1086(1236)
464 KOG0687 26S proteasome regulat 48.8 1.7E+02 0.0036 26.8 8.7 116 392-509 56-181 (393)
465 KOG4567 GTPase-activating prot 48.6 2.1E+02 0.0046 26.0 9.3 42 253-294 264-305 (370)
466 PF11663 Toxin_YhaV: Toxin wit 48.5 24 0.00051 27.2 3.1 33 242-276 105-137 (140)
467 PRK10564 maltose regulon perip 48.5 36 0.00079 30.5 4.8 37 235-271 260-296 (303)
468 PF04762 IKI3: IKI3 family; I 47.7 4.1E+02 0.0089 29.0 15.8 19 208-226 701-719 (928)
469 PF12926 MOZART2: Mitotic-spin 45.5 1.1E+02 0.0023 21.6 6.5 42 24-65 29-70 (88)
470 KOG1463 26S proteasome regulat 44.5 2.6E+02 0.0056 25.8 11.0 105 410-514 52-170 (411)
471 PF11838 ERAP1_C: ERAP1-like C 44.5 2.5E+02 0.0055 25.7 12.1 154 349-508 146-311 (324)
472 KOG1524 WD40 repeat-containing 44.4 1.2E+02 0.0025 29.7 7.5 54 369-430 573-626 (737)
473 PF07064 RIC1: RIC1; InterPro 44.2 2.3E+02 0.005 25.2 14.1 153 305-471 85-253 (258)
474 PF10516 SHNi-TPR: SHNi-TPR; 44.1 61 0.0013 18.6 3.7 28 473-500 2-29 (38)
475 COG4259 Uncharacterized protei 43.7 1.2E+02 0.0027 21.9 6.5 34 443-476 77-110 (121)
476 PF08424 NRDE-2: NRDE-2, neces 43.3 2.7E+02 0.0059 25.7 16.3 96 299-398 16-130 (321)
477 KOG0530 Protein farnesyltransf 43.2 2.4E+02 0.0052 25.0 12.2 50 456-505 131-180 (318)
478 PF12069 DUF3549: Protein of u 43.1 2.8E+02 0.006 25.8 12.4 133 207-341 172-306 (340)
479 PRK11639 zinc uptake transcrip 42.4 1.6E+02 0.0034 24.1 7.4 59 95-154 17-75 (169)
480 KOG0686 COP9 signalosome, subu 41.8 3.2E+02 0.0068 26.0 13.0 58 203-260 152-215 (466)
481 PF10255 Paf67: RNA polymerase 41.6 1.7E+02 0.0036 28.0 8.2 56 204-259 125-191 (404)
482 PF10475 DUF2450: Protein of u 41.6 70 0.0015 29.0 5.8 29 403-431 194-222 (291)
483 TIGR02270 conserved hypothetic 41.6 3.3E+02 0.0072 26.2 25.9 31 304-334 102-132 (410)
484 PRK09462 fur ferric uptake reg 40.7 1.4E+02 0.0031 23.6 6.8 60 94-154 7-67 (148)
485 KOG4279 Serine/threonine prote 40.5 4.5E+02 0.0097 27.4 13.8 194 285-502 181-396 (1226)
486 KOG0991 Replication factor C, 40.2 2.5E+02 0.0054 24.4 11.7 54 323-379 229-282 (333)
487 PF05053 Menin: Menin; InterP 39.8 4E+02 0.0087 26.7 10.6 28 405-432 317-344 (618)
488 PRK14700 recombination factor 39.7 2.9E+02 0.0064 25.1 14.1 51 232-282 123-176 (300)
489 PRK09857 putative transposase; 39.5 3E+02 0.0064 25.1 9.8 63 443-505 211-273 (292)
490 KOG0686 COP9 signalosome, subu 39.4 3.4E+02 0.0075 25.8 13.7 57 171-227 151-213 (466)
491 PF12583 TPPII_N: Tripeptidyl 39.3 1.6E+02 0.0034 22.8 6.1 42 444-485 82-123 (139)
492 PF08311 Mad3_BUB1_I: Mad3/BUB 38.9 1.8E+02 0.0039 22.4 8.6 42 122-163 81-123 (126)
493 KOG2422 Uncharacterized conser 38.8 4.2E+02 0.0091 26.6 18.0 129 301-432 283-445 (665)
494 PRK14962 DNA polymerase III su 38.8 4E+02 0.0086 26.3 10.8 127 187-313 198-330 (472)
495 KOG2396 HAT (Half-A-TPR) repea 38.8 3.9E+02 0.0085 26.3 34.8 242 249-500 299-558 (568)
496 PF07219 HemY_N: HemY protein 38.4 67 0.0015 23.8 4.3 38 450-487 71-108 (108)
497 KOG0991 Replication factor C, 38.3 2.7E+02 0.0059 24.3 14.6 82 401-485 189-285 (333)
498 PF12968 DUF3856: Domain of Un 38.3 1.8E+02 0.0039 22.2 9.5 62 406-467 55-129 (144)
499 KOG2659 LisH motif-containing 38.2 2.1E+02 0.0045 24.7 7.5 92 302-395 26-128 (228)
500 COG5108 RPO41 Mitochondrial DN 38.1 1.7E+02 0.0036 29.8 7.7 43 43-85 33-81 (1117)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.8e-79 Score=631.95 Aligned_cols=518 Identities=31% Similarity=0.553 Sum_probs=488.3
Q ss_pred CccchHHHHHHHHhccCchhhhhHHHHHHHHhCCCc-----------------------------------hHHHHHHHH
Q 048766 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLS-----------------------------------NVFVSTALM 45 (525)
Q Consensus 1 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----------------------------------~~~~~~~ll 45 (525)
||..+|++++.+|++.|++++|.++|++|.+.|+.| ++.+++.|+
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 456666666666666666666666666666555555 455567888
Q ss_pred HHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHH
Q 048766 46 GFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA 125 (525)
Q Consensus 46 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 125 (525)
.+|++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|.+.|+.+.+.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcC----CCC--
Q 048766 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNP-- 199 (525)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~-- 199 (525)
++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|..+|+.++.+|++.|++++|+++|++| ..|
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~ 389 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988 234
Q ss_pred ---------------------------------CcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 048766 200 ---------------------------------DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246 (525)
Q Consensus 200 ---------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 246 (525)
+..+++.++.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g 469 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNN 469 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCC
Confidence 45567778888999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Q 048766 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326 (525)
Q Consensus 247 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 326 (525)
+.++|+.+|++|.. +++||..||..++.+|++.|+++.+.+++..+.+.|+.++..++++++++|+++|++++|.++|+
T Consensus 470 ~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 470 RCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred CHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999986 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCCh
Q 048766 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406 (525)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 406 (525)
.+ .+|..+|++++.+|++.|+.++|+++|++|.+.| +.||..||+.++.+|.+.|. +++|.++|+.|.+.+|+.|+.
T Consensus 549 ~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~-v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 549 SH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-VNPDEVTFISLLCACSRSGM-VTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred hc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHhhcCh-HHHHHHHHHHHHHHhCCCCch
Confidence 99 9999999999999999999999999999999999 99999999999999999999 999999999999777999999
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
.+|+.++++|++.|++++|.+++++|+..|+..+|.+|+.+|...|+.+.++...+++++++|+++..|..|+++|...|
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCccCCcccEEEecceecccc
Q 048766 487 NWDVASVMRNFMRERGLRKEAGCSWIEVENVAAHSS 522 (525)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (525)
+|++|.++.+.|.+.|++++||+||+++.+.+|.|.
T Consensus 706 ~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~ 741 (857)
T PLN03077 706 KWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFL 741 (857)
T ss_pred ChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEe
Confidence 999999999999999999999999999999999984
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-71 Score=562.54 Aligned_cols=481 Identities=28% Similarity=0.448 Sum_probs=415.1
Q ss_pred chHHHHHHHHHHHHccCCHHHHHHHHhcCCC-----CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHH
Q 048766 36 SNVFVSTALMGFYRKINSLADAHKMFVEIPQ-----PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSA 110 (525)
Q Consensus 36 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 110 (525)
++..+++.++..|.+.|++++|+++|+.|.. ||..+|+.++.++.+.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 3444566666666666666666666665532 45566666666666666666666666666666666666666666
Q ss_pred HHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccC----CChhhHHHHHHHHHhCCCh
Q 048766 111 LAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID----KDIISWNSVIAASARNGNL 186 (525)
Q Consensus 111 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 186 (525)
+.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+ |+..+|+.++.++.+.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 666666666666666666663 35666666666666666666666666666632 4556666666666666666
Q ss_pred HHHHHHHhcC----CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 048766 187 ELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262 (525)
Q Consensus 187 ~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 262 (525)
+.+.+++..+ ..+|..+++.++.+|++.|++++|.++|++|.++|..+|+.++.+|++.|++++|+++|++|.+.|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 6666665544 457888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHH
Q 048766 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342 (525)
Q Consensus 263 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 342 (525)
+.||..||+.++.+|++.|++++|.+++..+.+.|++|+..+++.++++|++.|++++|.++|++|.++|..+|+.||.+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~ 400 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCCh
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 422 (525)
|++.|+.++|+++|++|.+.| +.||..||+.++.+|.+.|. +++|.++|+.|.+.+|+.|+..+|+.++++|++.|++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~-~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGL-SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence 999999999999999999999 99999999999999999999 9999999999988779999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 423 WRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 423 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
++|.+++++++..|+..+|..++.+|...|+++.|..+++++++++|++...|..|+.+|.+.|+|++|.+++++|.+.|
T Consensus 479 ~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 479 DEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCcccEEEecceecccc
Q 048766 503 LRKEAGCSWIEVENVAAHSS 522 (525)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~ 522 (525)
+.+.||+||+++.+.+|+|.
T Consensus 559 ~~k~~g~s~i~~~~~~~~f~ 578 (697)
T PLN03081 559 LSMHPACTWIEVKKQDHSFF 578 (697)
T ss_pred CccCCCeeEEEECCeEEEEc
Confidence 99999999999999999874
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.9e-70 Score=562.20 Aligned_cols=500 Identities=25% Similarity=0.392 Sum_probs=461.0
Q ss_pred CccchHHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 048766 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80 (525)
Q Consensus 1 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~ 80 (525)
|+..+|..++.+|.+.+.++.+.+++..+.+.+..+++..+++++..|++.|+++.|.++|++|++||..+||.+|.+|+
T Consensus 84 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~ 163 (857)
T PLN03077 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYA 163 (857)
T ss_pred CChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHH
Confidence 45556666666666666666666666666666666677777899999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHH
Q 048766 81 QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIG 160 (525)
Q Consensus 81 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (525)
+.|++++|+++|++|...|+.||..||+.++.+|...+++..+.+++..+.+.|+.|+..+++.|+.+|++.|++++|.+
T Consensus 164 ~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 243 (857)
T PLN03077 164 KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcC----CC-----------------------------------CCc
Q 048766 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PN-----------------------------------PDT 201 (525)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~-----------------------------------~~~ 201 (525)
+|++|.++|..+|+.++.+|++.|++++|+++|.+| .. ||.
T Consensus 244 lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~ 323 (857)
T PLN03077 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323 (857)
T ss_pred HHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch
Confidence 999999999999999999999999999999999998 22 367
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcccc
Q 048766 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281 (525)
Q Consensus 202 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 281 (525)
.+|+.++.+|++.|++++|.++|++|.+||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||..++.+|++.|
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence 78888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361 (525)
Q Consensus 282 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (525)
+++.+.+++..+.+.|+.++..+++.++++|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|..
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHH
Q 048766 362 VRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441 (525)
Q Consensus 362 ~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 441 (525)
+ +.||..||+.++.+|++.|. .+.+.+++..+.+. |+.++..+++.|+++|++.|++++|.++|+++ .||..+|
T Consensus 484 -~-~~pd~~t~~~lL~a~~~~g~-l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~ 557 (857)
T PLN03077 484 -T-LKPNSVTLIAALSACARIGA-LMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSW 557 (857)
T ss_pred -C-CCCCHhHHHHHHHHHhhhch-HHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhH
Confidence 5 89999999999999999999 99999999999887 99999988999999999999999998888887 6888888
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhc--CCChhHHHHHHHHHhhccChhHHHHHHHHHH-HcCCccCC
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLE--GDSDYVYVMLCNLYTSHGNWDVASVMRNFMR-ERGLRKEA 507 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 507 (525)
+.++.+|.+.|+.++|+++|++|.+.+ | |..+|..++.+|.+.|++++|.++|+.|. +.|+.|+.
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 888888888888899999888888755 5 77788888888888888888888888888 67777754
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.7e-67 Score=531.32 Aligned_cols=503 Identities=20% Similarity=0.255 Sum_probs=469.5
Q ss_pred CccchHHHHHHHHhccCchhhhhHHHHHHHHhCC-CchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHH
Q 048766 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGF-LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79 (525)
Q Consensus 1 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~ 79 (525)
++...|..++..+.+.|++++|.++|+.|.+.|+ +++..+++.++..|.+.|.+++|.++|+.|..||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3566788999999999999999999999999985 578888899999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHH
Q 048766 80 VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159 (525)
Q Consensus 80 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 159 (525)
++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcc----CCChhhHHHHHHHHHhCCChHHHHHHHhcC------CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC
Q 048766 160 GVFGEMI----DKDIISWNSVIAASARNGNLELAFGFLHRL------PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229 (525)
Q Consensus 160 ~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 229 (525)
++|+.|. .||..+|+.++.+|++.|++++|.++|++| ..||..+|+.++.+|++.|++++|.++|+.|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999994 479999999999999999999999999998 258999999999999999999999999999974
Q ss_pred ----CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHH
Q 048766 230 ----PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305 (525)
Q Consensus 230 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 305 (525)
|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.|+..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 7789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcc----CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcC
Q 048766 306 SALLDMYSKCGQVEIADSMFRSLC----RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381 (525)
Q Consensus 306 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (525)
+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G-i~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG-LCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH
Confidence 999999999999999999999995 7899999999999999999999999999999999 99999999999999999
Q ss_pred CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhc----c-------------------CChHHHHHHHHHh---CCC
Q 048766 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ----K-------------------GEVWRAQRMIREL---GFG 435 (525)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~---~~~ 435 (525)
.|+ +++|.+++++|.+. |+.||..+|+.++.++.+ + +..++|..+|++| +..
T Consensus 767 ~G~-le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 767 KDD-ADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred CCC-HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 999 99999999999888 999999999999876432 1 2346799999999 899
Q ss_pred CchhHHHHHHHHHhcCCChHHHHHHHHHHHhh-cCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCccCCc
Q 048766 436 SYGVVWRALLSASGACSDLDVARISAAEVIKL-EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAG 508 (525)
Q Consensus 436 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 508 (525)
|+..+|..++..+...++.+.+..+++.+... .+.+..+|..|++.+.+. .++|..++++|.+.|+.|+-.
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99999999997777888899888888876543 355788999999987322 368999999999999998764
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-61 Score=491.92 Aligned_cols=459 Identities=16% Similarity=0.225 Sum_probs=430.7
Q ss_pred CccchHHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC----CCcccHHHHH
Q 048766 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ----PSVVSWNSLI 76 (525)
Q Consensus 1 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~ll 76 (525)
|+..+++.++.+|.+.|.+++|..++..|.. |+..+|+.++.+|++.|+++.|.++|+.|.+ ||..+|+.+|
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI 479 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI 479 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4566778899999999999999999998863 9999999999999999999999999999975 8999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHH
Q 048766 77 SGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156 (525)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (525)
.+|++.|+++.|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|+++
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~d 559 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc------CCChhhHHHHHHHHHhCCChHHHHHHHhcC----CCCCcchHHHHHHHHHhcCChHHHHHHHhc
Q 048766 157 DAIGVFGEMI------DKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSS 226 (525)
Q Consensus 157 ~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 226 (525)
+|.++|++|. .||..+|+.++.+|++.|++++|.++|+.| ..|+..+|+.++.+|++.|++++|.++|++
T Consensus 560 eA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~e 639 (1060)
T PLN03218 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639 (1060)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999994 478999999999999999999999999999 467889999999999999999999999999
Q ss_pred CC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchH
Q 048766 227 MP----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302 (525)
Q Consensus 227 ~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 302 (525)
|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.|+.
T Consensus 640 M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 97 48999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcc----CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHH
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLC----RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 378 (525)
.+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+++.|.+++++|.+.| +.||..+|+.++..
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsLIgl 798 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Confidence 999999999999999999999999986 6899999999999999999999999999999999 99999999999876
Q ss_pred HcC----C-------------------CCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh---
Q 048766 379 CSH----T-------------------DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--- 432 (525)
Q Consensus 379 ~~~----~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 432 (525)
|.+ . +. .+.|..+|++|.+. |+.||..+|+.++.++.+.+....+..+++++
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w-~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~ 876 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSGRPQIENKW-TSWALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS 876 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccch-HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC
Confidence 532 1 11 35799999999988 99999999999999999999999999999988
Q ss_pred CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 433 GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 433 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
+..|+..+|..++.++.+. .++|..++++|.+.+
T Consensus 877 ~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 877 ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 5566788999999998432 468999999999987
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-59 Score=473.76 Aligned_cols=420 Identities=22% Similarity=0.363 Sum_probs=386.8
Q ss_pred CccchHHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 048766 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80 (525)
Q Consensus 1 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~ 80 (525)
||..+|+.++.+|++.++++.+.+++..|.+.|+.||+.+++.++.+|++.|++++|.++|++|++||..+||.++.+|+
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~ 200 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLV 200 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHH
Q 048766 81 QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIG 160 (525)
Q Consensus 81 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (525)
+.|++++|+++|++|.+.|+.|+..||+.++.+|.+.|..+.+.+++..+.+.|+.||..+++.|+.+|++.|++++|.+
T Consensus 201 ~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 280 (697)
T PLN03081 201 DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280 (697)
T ss_pred HCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcC----CCCCcchHHHHHHHHHhcCChHHHHHHHhcCC----CCCc
Q 048766 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMP----SPNS 232 (525)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~ 232 (525)
+|++|.++|+.+|+.++.+|++.|+.++|+++|++| ..||..+|+.++.+|++.|++++|.+++..+. .+|.
T Consensus 281 vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 281 VFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred HHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 999999999999999999999999999999999998 57899999999999999999999999998876 4888
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 048766 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312 (525)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (525)
.+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|..+|++|.+.|+.||..+|+.++.+|
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999986 4688899999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHhcc-----CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcc
Q 048766 313 SKCGQVEIADSMFRSLC-----RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387 (525)
Q Consensus 313 ~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 387 (525)
.+.|.+++|.++|+.|. .|+..+|+.++.+|++.|+.++|.+++++| + ..|+..+|+.++.+|...|+ ++
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~-~~p~~~~~~~Ll~a~~~~g~-~~ 511 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---P-FKPTVNMWAALLTACRIHKN-LE 511 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---C-CCCCHHHHHHHHHHHHHcCC-cH
Confidence 99999999999999885 478889999999999999999999998876 3 68999999999999999998 99
Q ss_pred hHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 388 KVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 388 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
.|..+++++. ++.|+ ..+|..|+..|.+.|++++|.+++++|
T Consensus 512 ~a~~~~~~l~---~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 512 LGRLAAEKLY---GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred HHHHHHHHHh---CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999998886 55664 678999999999999999999999988
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-33 Score=299.58 Aligned_cols=487 Identities=16% Similarity=0.084 Sum_probs=305.3
Q ss_pred HHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhc
Q 048766 6 LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQS 82 (525)
Q Consensus 6 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~ 82 (525)
+..+...+.+.|++++|.++|+.+.+.. +.+...+..+...+...|++++|.+.|+.+.. .+...+..++..+.+.
T Consensus 366 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 444 (899)
T TIGR02917 366 LSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS 444 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhc
Confidence 3334444444444444444444444332 22333444444444444444444444443332 1112233344445555
Q ss_pred CChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHH
Q 048766 83 GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162 (525)
Q Consensus 83 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 162 (525)
|++++|.++++.+... .+++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.+
T Consensus 445 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 445 GQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555555555555442 23345556666666666666666666666665543 334445555666666666666666666
Q ss_pred hhccC---CChhhHHHHHHHHHhCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcc
Q 048766 163 GEMID---KDIISWNSVIAASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS---PNSS 233 (525)
Q Consensus 163 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~ 233 (525)
+++.. .+..++..+...+.+.|+.++|...++++ .+.+...+..++..+...|++++|..+++.+.+ .+..
T Consensus 523 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 602 (899)
T TIGR02917 523 EKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPE 602 (899)
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence 66633 24455666666666666666666666665 223344556666666777777777777666542 3445
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 048766 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313 (525)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (525)
.|..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..++..+.
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 66677777777777777777777766542 3345566666667777777777777777776654 445566666777777
Q ss_pred cCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHH
Q 048766 314 KCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390 (525)
Q Consensus 314 ~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~ 390 (525)
..|+++.|.++++.+. +.+...+..+...+...|++++|++.|+++.. ..|+..++..+...+...|+ +++|.
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~-~~~A~ 756 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGN-TAEAV 756 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCC-HHHHH
Confidence 7777777777777665 23455666677777777777777777777777 45555666677777777777 77787
Q ss_pred HHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
+.++.+.+. .+.++..+..++..|.+.|++++|.+.|+++ ..++++..+..++..+...|+ ++|+..++++++..
T Consensus 757 ~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 757 KTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 777777653 3445667777777888888888888888776 333446667777777777777 77888888888777
Q ss_pred CCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 469 GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 469 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
|+++..+..++.++...|++++|..+++++.+.++.
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 777777777888888888888888888888776653
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-33 Score=299.64 Aligned_cols=486 Identities=11% Similarity=0.030 Sum_probs=424.2
Q ss_pred chHHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHH
Q 048766 4 YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYV 80 (525)
Q Consensus 4 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~ 80 (525)
..+..+...+...|++++|...+..+.+.. +.+......++..+.+.|++++|.++++.+.. ++...|..+...+.
T Consensus 398 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 476 (899)
T TIGR02917 398 AARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYL 476 (899)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 456677778889999999999999998876 44455667788899999999999999998865 46678999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHH
Q 048766 81 QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIG 160 (525)
Q Consensus 81 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (525)
..|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|..
T Consensus 477 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred hCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998753 3456677888888999999999999999998875 5577889999999999999999999
Q ss_pred HHhhccC---CChhhHHHHHHHHHhCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC---CC
Q 048766 161 VFGEMID---KDIISWNSVIAASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS---PN 231 (525)
Q Consensus 161 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~ 231 (525)
.++++.. .+...+..++..+.+.|++++|..+++.+ .+.+...|..++.++...|++++|...|+.+.+ .+
T Consensus 555 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 634 (899)
T TIGR02917 555 WLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634 (899)
T ss_pred HHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999854 25567888999999999999999999998 345677899999999999999999999998763 45
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 048766 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311 (525)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (525)
...+..+..++.+.|++++|..+|+++.... +.+..++..+...+...|++++|..+++.+.+.. +.+...+..+...
T Consensus 635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 712 (899)
T TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDL 712 (899)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHH
Confidence 5678889999999999999999999998763 5567889999999999999999999999998887 5677788889999
Q ss_pred HHcCCCHHHHHHHHHhcc--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchH
Q 048766 312 YSKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389 (525)
Q Consensus 312 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a 389 (525)
+...|++++|.+.|+.+. .|+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...+...|+ +++|
T Consensus 713 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~-~~~A 789 (899)
T TIGR02917 713 YLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKD-YDKA 789 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcC-HHHH
Confidence 999999999999999986 4555778888999999999999999999999843 4467888888999999999 9999
Q ss_pred HHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 048766 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
.++|+++.+. .++++..+..++..+...|+ .+|+..++++ ...| ++..+..++..+...|++++|...++++++.
T Consensus 790 ~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 790 IKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999864 35578889999999999999 8899999987 3333 4567778889999999999999999999999
Q ss_pred cCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 468 EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 468 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
+|.++.++..++.++.+.|++++|.+++++|++
T Consensus 867 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 867 APEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999863
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=2.1e-25 Score=237.37 Aligned_cols=486 Identities=13% Similarity=0.079 Sum_probs=273.5
Q ss_pred HHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC--CCcccH--------------
Q 048766 9 LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ--PSVVSW-------------- 72 (525)
Q Consensus 9 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~-------------- 72 (525)
..+.+...++.+.|.+.+.++.... +.++.++..++..+.+.|+.++|.+.++++.+ |+...+
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCch
Confidence 3344455566666666666665554 44566666666666666666666666666554 322211
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhh-HHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHH
Q 048766 73 ---NSLISGYVQSGKYRKALNLFVELERSEIYADAYS-FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148 (525)
Q Consensus 73 ---~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (525)
......+...|++++|++.|+++.+.+ +|+... ...+.......|+.++|...++++.+.. +.+...+..+...
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~l 190 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALL 190 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 112224555666666666666665432 222211 1111111223466666666666666553 3345555566666
Q ss_pred HHhcCCHHHHHHHHhhccCCCh-----------------------hhH--------------------------------
Q 048766 149 YGKCGSVEDAIGVFGEMIDKDI-----------------------ISW-------------------------------- 173 (525)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~-----------------------~~~-------------------------------- 173 (525)
+...|+.++|+..++++..... ..+
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 6666666666666655422100 000
Q ss_pred --HHHHHHHHhCCChHHHHHHHhcC--C-CCCcchHHHHHHHHHhcCChHHHHHHHhcCCC--CCcc---cHH-------
Q 048766 174 --NSVIAASARNGNLELAFGFLHRL--P-NPDTISYNEVINGIAQFGDIEDAIMILSSMPS--PNSS---SWN------- 236 (525)
Q Consensus 174 --~~l~~~~~~~~~~~~a~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~---~~~------- 236 (525)
......+...|++++|+..|++. . +.+...+..+...+.+.|++++|+..|++..+ |+.. .|.
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 01123345566666666666665 2 23455666666666667777777766666543 2211 111
Q ss_pred -----HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHH-----
Q 048766 237 -----SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS----- 306 (525)
Q Consensus 237 -----~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 306 (525)
.....+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|+..|+++.+.. +.+...+.
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l 428 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 11234556666667777666666542 2344455556666666666666666666666543 22222222
Q ss_pred -------------------------------------HHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhc
Q 048766 307 -------------------------------------ALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARN 346 (525)
Q Consensus 307 -------------------------------------~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 346 (525)
.+...+...|++++|.+.+++.. +.+...+..+...|.+.
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 23344556677777777777765 22445666677777777
Q ss_pred CChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh-------------------------
Q 048766 347 GDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDY------------------------- 400 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~------------------------- 400 (525)
|++++|+..++++.+ ..|+ ...+..+...+...++ .++|...++.+....
T Consensus 509 G~~~~A~~~l~~al~---~~P~~~~~~~a~al~l~~~~~-~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 509 GQRSQADALMRRLAQ---QKPNDPEQVYAYGLYLSGSDR-DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred CCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 888888888877776 3443 2222222222333343 444444444321100
Q ss_pred -------------CCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 401 -------------GIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 401 -------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
..+.++..+..+...|.+.|++++|+..++++ ...| +...+..++..+...|++++|++.+++++
T Consensus 585 ~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 585 DSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 11234445566777777777777777777776 3333 35666777777777788888888888777
Q ss_pred hhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 466 KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 466 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+..|+++..+..++.++...|++++|.++++++.+...
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 77777777777777777778888888888877776543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.3e-24 Score=231.19 Aligned_cols=479 Identities=12% Similarity=0.056 Sum_probs=325.2
Q ss_pred HHHHHhccCchhhhhHHHHHHHHhCCCchHHHHH-HHHHHHHccCCHHHHHHHHhcCCC--C-CcccHHHHHHHHHhcCC
Q 048766 9 LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVST-ALMGFYRKINSLADAHKMFVEIPQ--P-SVVSWNSLISGYVQSGK 84 (525)
Q Consensus 9 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~ 84 (525)
+.+.+.+.|++++|.+.++.+.+.+ +|+..... .........|+.++|++.|+++.+ | +...+..+...+...|+
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 3445777888888888888887665 44432211 112222345788888888887765 3 34456677777778888
Q ss_pred hHHHHHHHHHHHhcCC------------------C--------------CCHhhH---------------------HHHH
Q 048766 85 YRKALNLFVELERSEI------------------Y--------------ADAYSF---------------------TSAL 111 (525)
Q Consensus 85 ~~~A~~~~~~m~~~~~------------------~--------------p~~~~~---------------------~~ll 111 (525)
.++|++.++++.+... . |+...+ ....
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 8888888887654210 0 110000 0112
Q ss_pred HHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccC--CCh---hhHH------------
Q 048766 112 AACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID--KDI---ISWN------------ 174 (525)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~---~~~~------------ 174 (525)
..+...|++++|...|++..+.. +.+..++..+..++.+.|++++|+..|++..+ |+. ..|.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 23455688888888888887764 34667788888888888888888888887754 221 1111
Q ss_pred HHHHHHHhCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC--CC-cccHHHH----------
Q 048766 175 SVIAASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS--PN-SSSWNSI---------- 238 (525)
Q Consensus 175 ~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l---------- 238 (525)
.....+.+.|++++|+..|+++ .+.+...+..+...+...|++++|++.|+++.+ |+ ...+..+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 1234566788888888888877 223445666777888888888888888877663 22 2223222
Q ss_pred --------------------------------HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHH
Q 048766 239 --------------------------------LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286 (525)
Q Consensus 239 --------------------------------~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 286 (525)
...+...|++++|++.|++..+.. +-+...+..+...+...|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 233445677777777777766542 22445555666667777777777
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCC----CHh---------HHHHHHHHHHhcCChhHHH
Q 048766 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK----NLV---------TWNAMITGYARNGDLTKVI 353 (525)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~~l~~~~~~~~~~~~a~ 353 (525)
...++.+.+.. +.+...+..+...+...++.++|...++.+... +.. .+..+...+...|+.++|+
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 77777766544 333444444444556667777777777766421 111 1223455677788888888
Q ss_pred HHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-
Q 048766 354 ELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL- 432 (525)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 432 (525)
.+++. .+++...+..+...+...|+ +++|++.|+++.+. -+.++..+..++..|...|++++|++.++.+
T Consensus 594 ~~l~~------~p~~~~~~~~La~~~~~~g~-~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 594 ALLRQ------QPPSTRIDLTLADWAQQRGD-YAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHh------CCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88772 24455667778888999999 99999999999863 2336788999999999999999999999987
Q ss_pred CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh------hHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 433 GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSD------YVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 433 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
...|+ ...+..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|+..|++...
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444 55667788888999999999999999999876544 3566789999999999999999998864
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=1.7e-25 Score=202.71 Aligned_cols=444 Identities=14% Similarity=0.089 Sum_probs=358.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHhcCCC--CC-cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHccc
Q 048766 41 STALMGFYRKINSLADAHKMFVEIPQ--PS-VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117 (525)
Q Consensus 41 ~~~ll~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 117 (525)
...|..-.-+.|++++|.+.-..+-+ |+ ....-.+-..+.+..+.+....--....+. .+--..+|..+.+.+...
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 34566667788999999988776654 22 222222233455555666555443333332 233567899999999999
Q ss_pred CChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccC--CChh-hHHHHHHHHHhCCChHHHHHHHh
Q 048766 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID--KDII-SWNSVIAASARNGNLELAFGFLH 194 (525)
Q Consensus 118 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 194 (525)
|+++.|...++.+++.. +..+..|..+..++...|+.+.|...|.+..+ |+.. ..+.+...+-..|+.++|...|.
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999999998864 34578899999999999999999999988866 4333 23345555666899999998888
Q ss_pred cC--CCC-CcchHHHHHHHHHhcCChHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CH
Q 048766 195 RL--PNP-DTISYNEVINGIAQFGDIEDAIMILSSMPSPNS---SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM-DE 267 (525)
Q Consensus 195 ~~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~ 267 (525)
+. ..| -...|..|...+-..|+...|+..|++..+-|+ ..|-.|...|...+.+++|+..|.+.... .| ..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A 286 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHA 286 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcch
Confidence 87 233 345788899999999999999999999885333 46888999999999999999999888765 45 45
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHH
Q 048766 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYA 344 (525)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 344 (525)
..+..+...|..+|.++.|+..|++.++.. +.-+..|+.+..++...|++.+|...+.+.. .....+.+.|...|.
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 677788888999999999999999999876 4457789999999999999999999999986 334568899999999
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCCh
Q 048766 345 RNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEV 422 (525)
Q Consensus 345 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 422 (525)
..|.++.|..+|....+ +.|. ...++.|...|.+.|+ +++|+..|++.. .++|+ ...|+.++..|...|+.
T Consensus 366 E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgn-l~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGN-LDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhccc-HHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999 8887 5778899999999999 999999999998 77887 67899999999999999
Q ss_pred HHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHH
Q 048766 423 WRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496 (525)
Q Consensus 423 ~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (525)
..|++.+.+. .+.|. ......|...|...|+..+|+..|+.+++++||.|.++..++.++.--.+|.+--+-++
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~ 514 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMK 514 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHH
Confidence 9999999987 66776 56788899999999999999999999999999999999999999877776665433333
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=5.4e-23 Score=209.24 Aligned_cols=471 Identities=10% Similarity=-0.014 Sum_probs=299.5
Q ss_pred CchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCChHHHHHHHHH
Q 048766 17 GWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ--PSVVSWNSLISGYVQSGKYRKALNLFVE 94 (525)
Q Consensus 17 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 94 (525)
|++++|...|...++.. |-++.++..|...|...|++++|+..+++..+ |+-..|..++..+ +++.+|..++++
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~ 133 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEE 133 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHH
Confidence 66666666666666665 44466666666666666666666666666554 3222222222211 455555555555
Q ss_pred HHhcC--------------------------------------CCCCHhhHHHH-HHHHcccCChHHHHHHHHHHHHccc
Q 048766 95 LERSE--------------------------------------IYADAYSFTSA-LAACGQLGSLQLGMAIHSKIVKYSL 135 (525)
Q Consensus 95 m~~~~--------------------------------------~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~ 135 (525)
+.+.. ..|+....... ...|...|++++|..++.++.+.+
T Consensus 134 l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~- 212 (987)
T PRK09782 134 LLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN- 212 (987)
T ss_pred HHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-
Confidence 54421 11223223333 556666777777777777777765
Q ss_pred CCCcchhhHHHHHHHh-cCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCC-----CCcch------
Q 048766 136 ERGVVIANCLIDMYGK-CGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-----PDTIS------ 203 (525)
Q Consensus 136 ~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~------ 203 (525)
+.+......|..+|.. .++ +++..+++...+.+...+..++..|.+.|+.++|...+.++.. |...+
T Consensus 213 pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~ 291 (987)
T PRK09782 213 TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLS 291 (987)
T ss_pred CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHH
Confidence 3344445556666666 355 6666666654445677777888888888888888888887711 10000
Q ss_pred ------------------------HHHHHHHHHhc---------------------------------------------
Q 048766 204 ------------------------YNEVINGIAQF--------------------------------------------- 214 (525)
Q Consensus 204 ------------------------~~~l~~~~~~~--------------------------------------------- 214 (525)
...++..+.+.
T Consensus 292 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~ 371 (987)
T PRK09782 292 KYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ 371 (987)
T ss_pred hccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc
Confidence 00112223333
Q ss_pred ------------------CChHHHHHHHhcCCC--CC----cccHHHHHHHHHhcCC---hhHHHHH-------------
Q 048766 215 ------------------GDIEDAIMILSSMPS--PN----SSSWNSILTGYVNRNR---VPEALHL------------- 254 (525)
Q Consensus 215 ------------------~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~---~~~a~~~------------- 254 (525)
|+.++|.++|+.... ++ ...-.-++..|.+.+. ..++..+
T Consensus 372 ~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 451 (987)
T PRK09782 372 EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQ 451 (987)
T ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHH
Confidence 344444444443321 11 1112233444444333 1122111
Q ss_pred ---------HHHHhhC-CC-CC--CHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHH
Q 048766 255 ---------FGEMQSK-DV-PM--DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321 (525)
Q Consensus 255 ---------~~~m~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 321 (525)
.+..... +. ++ +...+..+..++.. ++.++|...+....... |+......+...+...|++++|
T Consensus 452 ~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 452 SQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATA 528 (987)
T ss_pred hhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHH
Confidence 1111000 01 22 34444444444444 66667777666666554 3333344455556789999999
Q ss_pred HHHHHhcc--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH-hHHHHHHHHHcCCCCCcchHHHHHHHhhh
Q 048766 322 DSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS-VTFLNVLAACSHTDIPFDKVSEYFESMTK 398 (525)
Q Consensus 322 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 398 (525)
...|+++. .++...+..+...+.+.|+.++|...+++..+ ..|+. ..+..+.......|+ +++|...+++..
T Consensus 529 i~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~---l~P~~~~l~~~La~~l~~~Gr-~~eAl~~~~~AL- 603 (987)
T PRK09782 529 LAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ---RGLGDNALYWWLHAQRYIPGQ-PELALNDLTRSL- 603 (987)
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-
Confidence 99998775 34455566777888899999999999999988 44543 333344445556688 999999999998
Q ss_pred hhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 399 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
.+.|+...+..++.++.+.|++++|+..+++. ...|+ ...+..+..++...|++++|+..++++++..|+++.++.
T Consensus 604 --~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~ 681 (987)
T PRK09782 604 --NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIR 681 (987)
T ss_pred --HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44778888999999999999999999999987 44555 567788888999999999999999999999999999999
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 477 MLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.++.++...|++++|+..+++..+..+
T Consensus 682 nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 682 QLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999987654
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.7e-21 Score=198.41 Aligned_cols=484 Identities=11% Similarity=0.009 Sum_probs=313.8
Q ss_pred chHHHHHHHHhccCchhhhhHHHHHHHHhCCCch--HHHHHHHHHH--HHccCCHHHHHHHHhcCCC--C-CcccHHHHH
Q 048766 4 YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSN--VFVSTALMGF--YRKINSLADAHKMFVEIPQ--P-SVVSWNSLI 76 (525)
Q Consensus 4 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll 76 (525)
.+|..||-++...+-.- |..+.....+.++.+- -.++-.+..+ +...|++++|+..|+...+ | +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA 85 (987)
T PRK09782 7 IGWSGLLLTSLLSTSAL-ADNIGTSAEELGLSDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLA 85 (987)
T ss_pred cCchHHHHHHHhccHhh-hhhcccccccCCCchHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35566666665555443 4444445555655442 1223333333 3445999999999999876 3 456788899
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHH-----------
Q 048766 77 SGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL----------- 145 (525)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----------- 145 (525)
..|...|++++|...+++..+. .|+...|..++..+ ++.++|..+++++.+.. +-+..++..+
T Consensus 86 ~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~ 159 (987)
T PRK09782 86 EAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALR 159 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhh
Confidence 9999999999999999999984 56555555544333 77778888888777653 2223333322
Q ss_pred -----------------------------HHHHHhcCCHHHHHHHHhhccCC---ChhhHHHHHHHHHh-CCChHHHHHH
Q 048766 146 -----------------------------IDMYGKCGSVEDAIGVFGEMIDK---DIISWNSVIAASAR-NGNLELAFGF 192 (525)
Q Consensus 146 -----------------------------~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~a~~~ 192 (525)
.+.|.+.|++++|+.++.++.+. +......+..+|.+ .++ +++..+
T Consensus 160 y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al 238 (987)
T PRK09782 160 LAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLAL 238 (987)
T ss_pred hhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHH
Confidence 44455555555565555555442 22223344445554 244 555555
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC-----CCcccH------------------------------HH
Q 048766 193 LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PNSSSW------------------------------NS 237 (525)
Q Consensus 193 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~------------------------------~~ 237 (525)
++...+.+......++..+.+.|+.++|.++++++.. |...+| -.
T Consensus 239 ~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (987)
T PRK09782 239 QSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGA 318 (987)
T ss_pred hchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHH
Confidence 5443345666777888889999999999988887751 111110 00
Q ss_pred HHHHH---------------------------------------------------------------HhcCChhHHHHH
Q 048766 238 ILTGY---------------------------------------------------------------VNRNRVPEALHL 254 (525)
Q Consensus 238 l~~~~---------------------------------------------------------------~~~~~~~~a~~~ 254 (525)
++..+ .+.|+.++|.++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~ 398 (987)
T PRK09782 319 TLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADL 398 (987)
T ss_pred HHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 01112 233445555555
Q ss_pred HHHHhhC-C-CCCCHHHHHHHHHHhccccc---hHHHHHH----------------------HHHHHHh-CC-Cc--hHH
Q 048766 255 FGEMQSK-D-VPMDEYTFSTMLSGIAGLSA---LTWGMLI----------------------HSCVIKQ-GL-DA--SIV 303 (525)
Q Consensus 255 ~~~m~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~ 303 (525)
|+..... + ..++.....-++..+.+.+. ..++..+ +...... +. ++ +..
T Consensus 399 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~ 478 (987)
T PRK09782 399 LLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAA 478 (987)
T ss_pred HHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHH
Confidence 5554441 1 12233333355555555544 2222111 1111111 11 33 566
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcc--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcC
Q 048766 304 VASALLDMYSKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381 (525)
Q Consensus 304 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (525)
.+..+..++.. ++.++|...+.+.. .|+......+...+...|++++|+..|+++.. ..|+...+..+...+..
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~---~~p~~~a~~~la~all~ 554 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISL---HDMSNEDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCcHHHHHHHHHHHH
Confidence 67777777766 78888888777665 34433333334445689999999999999866 45555566677778888
Q ss_pred CCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHHHHHHHHHhcCCChHHHHH
Q 048766 382 TDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASGACSDLDVARI 459 (525)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~ 459 (525)
.|+ .++|.++++...+. .|+ ...+..+.....+.|++++|...+++. ...|+...+..+...+.+.|++++|+.
T Consensus 555 ~Gd-~~eA~~~l~qAL~l---~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 555 AGN-GAARDRWLQQAEQR---GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred CCC-HHHHHHHHHHHHhc---CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 898 99999999998754 343 333444444555679999999999987 666788889999999999999999999
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 460 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.++++++.+|+++.++..++.++...|++++|+..+++..+..+
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999988755
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.5e-23 Score=190.17 Aligned_cols=421 Identities=14% Similarity=0.145 Sum_probs=347.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHh
Q 048766 72 WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGK 151 (525)
Q Consensus 72 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (525)
...+..-..+.|++.+|.+.-...-..+ +.+......+-..+....+.+...+.-....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445556678899999998876655443 2233333334444666666666655544444432 4457799999999999
Q ss_pred cCCHHHHHHHHhhccCC---ChhhHHHHHHHHHhCCChHHHHHHHhcC--CCCCcc-hHHHHHHHHHhcCChHHHHHHHh
Q 048766 152 CGSVEDAIGVFGEMIDK---DIISWNSVIAASARNGNLELAFGFLHRL--PNPDTI-SYNEVINGIAQFGDIEDAIMILS 225 (525)
Q Consensus 152 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 225 (525)
.|++++|+..++.+++. .+..|.-+..++...|+.+.|.+.|.+. .+|+.. ....+...+...|++.+|...+.
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999999999663 5678999999999999999999999988 444433 33445666677899999999998
Q ss_pred cCCC--CC-cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHhccccchHHHHHHHHHHHHhCCCch
Q 048766 226 SMPS--PN-SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD-EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301 (525)
Q Consensus 226 ~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 301 (525)
+..+ |. ...|+.|...+..+|+...|++.|++.... .|+ ...|..|...|...+.++.|...|.+..... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 8764 43 357999999999999999999999999875 443 5678888899999999999999998887764 455
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcc--CCC-HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHH
Q 048766 302 IVVASALLDMYSKCGQVEIADSMFRSLC--RKN-LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLA 377 (525)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 377 (525)
..++..+...|..+|.++.|+..+++.. +|+ ...|+.|..++...|++.+|.+.|.+... ..|+ ....+.|..
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~---l~p~hadam~NLgn 362 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR---LCPNHADAMNNLGN 362 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH---hCCccHHHHHHHHH
Confidence 6677888888999999999999999987 343 56899999999999999999999999998 7776 677889999
Q ss_pred HHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCCh
Q 048766 378 ACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDL 454 (525)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~ 454 (525)
.+...|. ++.|..+|.... .+.|. ...++.|...|..+|++++|+..+++. .+.|. ...+..++..|...|+.
T Consensus 363 i~~E~~~-~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 363 IYREQGK-IEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHhcc-chHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 9999999 999999999887 45665 567899999999999999999999997 77888 56889999999999999
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 455 DVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 455 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
+.|++.+.+++..+|.-.+++..|+.+|..+|+..+|++-|+...+..+.
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999998876554
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=7.7e-22 Score=197.51 Aligned_cols=419 Identities=11% Similarity=-0.008 Sum_probs=300.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHh
Q 048766 72 WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGK 151 (525)
Q Consensus 72 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (525)
+......+...|++++|+..|++..+ +.|+...|..+..++...|++++|...+...++.+ +.+..++..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44556677888999999999999887 56788888888889999999999999999988864 4456788888999999
Q ss_pred cCCHHHHHHHHhhccCCC---hhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC
Q 048766 152 CGSVEDAIGVFGEMIDKD---IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP 228 (525)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 228 (525)
.|++++|+.-|..+...+ ......++..+........+...++.- +++...+..+.. +...........-+....
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 999999988776653321 111112222222211123333333332 222222222222 222111111222122211
Q ss_pred CCCc---ccHHHHHHHH---HhcCChhHHHHHHHHHhhCC-CCC-CHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCc
Q 048766 229 SPNS---SSWNSILTGY---VNRNRVPEALHLFGEMQSKD-VPM-DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300 (525)
Q Consensus 229 ~~~~---~~~~~l~~~~---~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 300 (525)
+.+. ..+..+...+ ...+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++...+.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 1111 1122221111 23478999999999998765 233 34567777788889999999999999998875 44
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHH
Q 048766 301 SIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVL 376 (525)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 376 (525)
....+..+..++...|++++|...|+.+. +.+...|..+...+...|++++|+..|++..+ ..|+ ...+..+.
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~---l~P~~~~~~~~la 440 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID---LDPDFIFSHIQLG 440 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCccCHHHHHHHH
Confidence 56678888999999999999999999886 34577899999999999999999999999998 5664 66677788
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCch-hH-------HHHHHHH
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYG-VV-------WRALLSA 447 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~-------~~~l~~~ 447 (525)
..+...|+ +++|+..+++..+. .+.++..+..++..+...|++++|++.|++. ...|+. .. +......
T Consensus 441 ~~~~~~g~-~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 441 VTQYKEGS-IASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHCCC-HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 88899999 99999999999853 3345788999999999999999999999986 333321 11 1112223
Q ss_pred HhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 448 SGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 448 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
+...|++++|+++++++++++|++..++..++.++.+.|++++|+.+|++..+..
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 3446999999999999999999999999999999999999999999999987653
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2.5e-21 Score=184.46 Aligned_cols=297 Identities=11% Similarity=0.060 Sum_probs=208.7
Q ss_pred HhcCChHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---HHHHHHHHHHhccccchHH
Q 048766 212 AQFGDIEDAIMILSSMPS---PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD---EYTFSTMLSGIAGLSALTW 285 (525)
Q Consensus 212 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 285 (525)
...|++++|...|+++.+ .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 344444445554444442 1223455566666666666666666666655422111 1345555666666666666
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCC--------HhHHHHHHHHHHhcCChhHHHHHHH
Q 048766 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN--------LVTWNAMITGYARNGDLTKVIELFE 357 (525)
Q Consensus 286 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (525)
|..++..+.+.. +.+..++..++.++.+.|++++|.+.++.+.+.+ ...+..++..+...|++++|+..++
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 666666666543 3455666667777777777777777777664211 1234567777888999999999999
Q ss_pred HHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC--hhHHHHHHHHHhccCChHHHHHHHHHh-C
Q 048766 358 QLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT--VEHCCSMIRLMGQKGEVWRAQRMIREL-G 433 (525)
Q Consensus 358 ~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 433 (525)
++.+ ..|+ ...+..+...+...|+ +++|.++++++.+. .|+ ...+..++.+|.+.|++++|...++++ .
T Consensus 205 ~al~---~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 205 KALA---ADPQCVRASILLGDLALAQGD-YAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHh---HCcCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9887 4454 5567778888888998 99999999998754 343 456788899999999999999999987 5
Q ss_pred CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh---ccChhHHHHHHHHHHHcCCccCCccc
Q 048766 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS---HGNWDVASVMRNFMRERGLRKEAGCS 510 (525)
Q Consensus 434 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~ 510 (525)
..|+...+..++..+.+.|++++|...++++++..|++. .+..+...+.. .|+.+++..+++++.+.++.++|.+.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 567766778888999999999999999999999999665 45544544442 56999999999999999999999866
Q ss_pred EEEecce
Q 048766 511 WIEVENV 517 (525)
Q Consensus 511 ~~~~~~~ 517 (525)
...++..
T Consensus 357 c~~cg~~ 363 (389)
T PRK11788 357 CRNCGFT 363 (389)
T ss_pred CCCCCCC
Confidence 5544443
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=2.4e-20 Score=190.12 Aligned_cols=401 Identities=9% Similarity=0.031 Sum_probs=204.4
Q ss_pred hHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 048766 37 NVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113 (525)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 113 (525)
++....-.+.+....|+.++|++++..... .+...+..+...+...|++++|.++|++..+.. +.+...+..+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444444455555566666666666665543 222235556666666666666666666655531 2234445555555
Q ss_pred HcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHH
Q 048766 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL 193 (525)
Q Consensus 114 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 193 (525)
+...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.++
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P----------------------- 147 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP----------------------- 147 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------------
Confidence 566666666666666665542 33334 55555666666666666666666543211
Q ss_pred hcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC-CCc------ccHHHHHHHHHh-----cCCh---hHHHHHHHHH
Q 048766 194 HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS-PNS------SSWNSILTGYVN-----RNRV---PEALHLFGEM 258 (525)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~m 258 (525)
.+...+..+..++...+..+.|...++.... |+. .....++..... .+++ ++|++.++.+
T Consensus 148 -----~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 148 -----QTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred -----CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 1122223333334444444444444444332 110 011112222111 1122 4455555555
Q ss_pred hhC-CCCCCHH-HHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCC---H
Q 048766 259 QSK-DVPMDEY-TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN---L 333 (525)
Q Consensus 259 ~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~ 333 (525)
.+. ...|+.. .+.. .....+.++...|++++|+..|+.+.+.+ +
T Consensus 223 l~~~~~~p~~~~~~~~-------------------------------a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P 271 (765)
T PRK10049 223 EALWHDNPDATADYQR-------------------------------ARIDRLGALLARDRYKDVISEYQRLKAEGQIIP 271 (765)
T ss_pred HhhcccCCccchHHHH-------------------------------HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCC
Confidence 532 1112111 1100 00000112233345555555555544211 1
Q ss_pred h-HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-----HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhC------
Q 048766 334 V-TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-----SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG------ 401 (525)
Q Consensus 334 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~------ 401 (525)
. .-..+..+|...|++++|+..|+++.+. .|. ......+..++...|+ +++|.++++.+.....
T Consensus 272 ~~a~~~la~~yl~~g~~e~A~~~l~~~l~~---~p~~~~~~~~~~~~L~~a~~~~g~-~~eA~~~l~~~~~~~P~~~~~~ 347 (765)
T PRK10049 272 PWAQRWVASAYLKLHQPEKAQSILTELFYH---PETIADLSDEELADLFYSLLESEN-YPGALTVTAHTINNSPPFLRLY 347 (765)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhc---CCCCCCCChHHHHHHHHHHHhccc-HHHHHHHHHHHhhcCCceEeec
Confidence 0 1111344455555555555555555442 221 1223334444555555 5555555555543200
Q ss_pred ----CCCC---hhHHHHHHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 402 ----IKPT---VEHCCSMIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 402 ----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
-.|+ ...+..++..+...|++++|++.++++ . .+.+...+..++..+...|++++|++.++++++.+|+++
T Consensus 348 ~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~ 427 (765)
T PRK10049 348 GSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI 427 (765)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Confidence 0122 123445666777778888888888776 2 233355667777777778888888888888888888777
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
..+..++..+...|++++|..+++++.+..+
T Consensus 428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 428 NLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 8777788888888888888888877776543
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=2e-19 Score=180.17 Aligned_cols=421 Identities=10% Similarity=-0.031 Sum_probs=298.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHccc
Q 048766 40 VSTALMGFYRKINSLADAHKMFVEIPQ--PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117 (525)
Q Consensus 40 ~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 117 (525)
.+......|.+.|++++|+..|++... |+...|..+..++...|++++|++.++...+.+ +.+...+..+..++...
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 345667778888999999999998765 777788888899999999999999999998753 23466788888899999
Q ss_pred CChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCC
Q 048766 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197 (525)
Q Consensus 118 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 197 (525)
|++++|...+......+. .+......++..+........+...++.-. .+...+..+.. +...........-+....
T Consensus 208 g~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDG-FRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 999999988876655431 222112222222222111233333333221 22233333322 222222222222222221
Q ss_pred CCC---cchHHHHHHHH---HhcCChHHHHHHHhcCCCC------CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 048766 198 NPD---TISYNEVINGI---AQFGDIEDAIMILSSMPSP------NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265 (525)
Q Consensus 198 ~~~---~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 265 (525)
+.+ ...+..+...+ ...+++++|.+.|+...+. ....|..+...+...|++++|+..|++..+.. +-
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 111 11122221111 2346888999999877632 33467888888999999999999999988752 23
Q ss_pred CHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHH
Q 048766 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITG 342 (525)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 342 (525)
....|..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...|++.. +.+...+..+...
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 45678888888999999999999999998875 5567888899999999999999999999986 3356678888899
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCCh-h-------HHHHHH
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV-E-------HCCSMI 413 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~-------~~~~l~ 413 (525)
+.+.|++++|+..+++..+ ..|+ ...++.+...+...|+ +++|++.|+...+. .|+. . .+....
T Consensus 443 ~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNK-FDEAIEKFDTAIEL---EKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccC-HHHHHHHHHHHHhc---CCccccccccHHHHHHHHH
Confidence 9999999999999999988 4564 6788888899999999 99999999998743 3421 1 112222
Q ss_pred HHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChh
Q 048766 414 RLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY 473 (525)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 473 (525)
..+...|++++|.+.+++. ...|+ ...+..++..+.+.|++++|+..|+++.++.+....
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 3344579999999999986 44555 456788999999999999999999999999875443
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=1.1e-19 Score=181.31 Aligned_cols=352 Identities=9% Similarity=0.010 Sum_probs=181.0
Q ss_pred ccCCHHHHHHHHhcCCC------CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHH
Q 048766 50 KINSLADAHKMFVEIPQ------PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123 (525)
Q Consensus 50 ~~~~~~~a~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 123 (525)
+..+|+..--.|...++ .+..-...++..+.++|+++.|..+++...... +-+...+..++.+....|++++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHH
Confidence 44555555555555543 233344455666667777777777777766543 22334444455555566777777
Q ss_pred HHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcch
Q 048766 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS 203 (525)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 203 (525)
...++.+.+.. +.+...+..+...+...|++++|...+++....++ .+...
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P----------------------------~~~~a 146 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS----------------------------GNSQI 146 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------------------CcHHH
Confidence 77777776653 33455566666666666666666666666543111 11222
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--CCCc-ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccc
Q 048766 204 YNEVINGIAQFGDIEDAIMILSSMP--SPNS-SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280 (525)
Q Consensus 204 ~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 280 (525)
+..++..+...|++++|...++.+. .|+. ..+..+ ..+...|++++|...++.+......++...+..+..++...
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 225 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV 225 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC
Confidence 2333333333333333333333221 1111 122222 23455566666666666554442222222222233334444
Q ss_pred cchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhH----HHHHH
Q 048766 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK----VIELF 356 (525)
Q Consensus 281 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~ 356 (525)
|++++|...+..+.+.. +. +...+..+...+...|++++ |+..+
T Consensus 226 g~~~eA~~~~~~al~~~-p~-------------------------------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 226 GKYQEAIQTGESALARG-LD-------------------------------GAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred CCHHHHHHHHHHHHhcC-CC-------------------------------CHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 44444444444444332 22 33444555555555555553 56666
Q ss_pred HHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-C
Q 048766 357 EQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-G 433 (525)
Q Consensus 357 ~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 433 (525)
+++.+ ..|+ ...+..+...+...|+ +++|...++++.+. .| ++..+..++.+|.+.|++++|+..++++ .
T Consensus 274 ~~Al~---l~P~~~~a~~~lg~~l~~~g~-~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 274 RHALQ---FNSDNVRIVTLYADALIRTGQ-NEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHh---hCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66665 3443 4455555666666666 66666666666532 33 3444555666666666666666666655 3
Q ss_pred CCCchhH-HHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 434 FGSYGVV-WRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 434 ~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
..|+... +..+..++...|++++|+..|+++++..|++
T Consensus 347 ~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 347 EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 3344322 2233455566666666666666666666654
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=8e-19 Score=167.99 Aligned_cols=433 Identities=14% Similarity=0.091 Sum_probs=255.3
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhH
Q 048766 67 PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY--ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144 (525)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 144 (525)
.|+...+.|...|.-.|++..++.+...+...... .-...|-.+.+++-..|++++|...|.+..+.........+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 45566666666667777777777777666553210 1233466666777777777777777776666532111333445
Q ss_pred HHHHHHhcCCHHHHHHHHhhccC--C-ChhhHHHHHHHHHhCC----ChHHHHHHHhcC---CCCCcchHHHHHHHHHhc
Q 048766 145 LIDMYGKCGSVEDAIGVFGEMID--K-DIISWNSVIAASARNG----NLELAFGFLHRL---PNPDTISYNEVINGIAQF 214 (525)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~----~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~ 214 (525)
|...+.+.|+++.+...|+.+.+ | +..+...+...|...+ ..+.|..++.+. ...|...|..+...+...
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 66777777777777777777744 2 3344445555555543 345566666555 223445555555555443
Q ss_pred CCh------HHHHHHHhcCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCCH------HHHHHHHHHhc
Q 048766 215 GDI------EDAIMILSSMP-SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK---DVPMDE------YTFSTMLSGIA 278 (525)
Q Consensus 215 ~~~------~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~~l~~~~~ 278 (525)
.-+ ..|..++.... .+.+...|.+...+...|+++.|...|+..... ...+|. .+--.+.....
T Consensus 428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 322 22332222221 245556777777777777777777777776554 112222 22233445555
Q ss_pred cccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHH
Q 048766 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIEL 355 (525)
Q Consensus 279 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 355 (525)
..++++.|...|..+.+.. |.-+..|..++.+....++..+|...+..+. ..|+..+..+...+.+...+..|.+-
T Consensus 508 ~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~ 586 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK 586 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence 6667777777777777654 3334444444433334456666766666664 34555666666666666666666666
Q ss_pred HHHHhhCCCCCCCHhHHHHHHHHHcC------------CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChH
Q 048766 356 FEQLKTVRDLQPDSVTFLNVLAACSH------------TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW 423 (525)
Q Consensus 356 ~~~~~~~~~~~p~~~~~~~l~~~~~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 423 (525)
|....+.-...+|..+...|...|.. .+. .++|+++|.++.+. -+-|...-+-++-.+...|++.
T Consensus 587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~-~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 587 FETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH-QEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred HHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH-HHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCch
Confidence 65555433233444444444433321 112 45666666666642 2335666666777777788888
Q ss_pred HHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc--CCChhHHHHHHHHHhhccChhHHHHHHHHHH
Q 048766 424 RAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE--GDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 424 ~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
+|..+|... .......+|..++..|..+|+|..|+++|+..++.. -+++.+...|++++.+.|++.+|.+.+....
T Consensus 664 ~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 664 EARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 888888776 222345677777888888888888888888777754 3566777788888888888888877776665
Q ss_pred HcCC
Q 048766 500 ERGL 503 (525)
Q Consensus 500 ~~~~ 503 (525)
...+
T Consensus 744 ~~~p 747 (1018)
T KOG2002|consen 744 HLAP 747 (1018)
T ss_pred HhCC
Confidence 5443
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=3.6e-19 Score=177.65 Aligned_cols=323 Identities=7% Similarity=-0.029 Sum_probs=250.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcccHHHHHHHHHhc
Q 048766 172 SWNSVIAASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS---PNSSSWNSILTGYVNR 245 (525)
Q Consensus 172 ~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 245 (525)
....++..+.+.|++++|..+++.. .+.+......++.+....|++++|...|+++.+ .+...+..+...+.+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 3445566677777777777777666 223344555566666677888888888877763 3445677778888888
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHH
Q 048766 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325 (525)
Q Consensus 246 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 325 (525)
|++++|...++++.... +.+...+..+..++...|++++|...+..+...... +...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999998888752 345667777888888899999999988887766533 33333333 3477889999999999
Q ss_pred HhccCC----CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcch----HHHHHHHh
Q 048766 326 RSLCRK----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDK----VSEYFESM 396 (525)
Q Consensus 326 ~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~----a~~~~~~~ 396 (525)
+.+.+. +...+..++..+...|++++|+..++++.+ ..| +...+..+...+...|+ +++ |...++++
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~---~~p~~~~~~~~Lg~~l~~~G~-~~eA~~~A~~~~~~A 276 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA---RGLDGAALRRSLGLAYYQSGR-SREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCC-chhhHHHHHHHHHHH
Confidence 887632 233445556788899999999999999998 455 46777788888999998 885 89999998
Q ss_pred hhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChh
Q 048766 397 TKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY 473 (525)
Q Consensus 397 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 473 (525)
.+ +.| +...+..++..+.+.|++++|+..+++. ...|+ ...+..+...+.+.|++++|+..++++++..|+++.
T Consensus 277 l~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 277 LQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred Hh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 85 345 5778899999999999999999999987 44444 556777889999999999999999999999998887
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 474 VYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
.+..++.++...|++++|...|+++.+..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 7777899999999999999999999887654
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.7e-18 Score=176.70 Aligned_cols=414 Identities=8% Similarity=0.003 Sum_probs=278.2
Q ss_pred hHHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHh
Q 048766 5 VLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQ 81 (525)
Q Consensus 5 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~ 81 (525)
...-.+.+....|+.++|.+++....... +.+...+..+...+...|++++|.++|++... .+...+..+...+..
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34456778889999999999999988744 56666789999999999999999999999654 445667788888999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHH
Q 048766 82 SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161 (525)
Q Consensus 82 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 161 (525)
.|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...|..+.|+..
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999999998852 33455 8888888899999999999999999975 44566677788888889999999999
Q ss_pred HhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh---HHHHHHHhcCCC-----CCcc
Q 048766 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDI---EDAIMILSSMPS-----PNSS 233 (525)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~-----~~~~ 233 (525)
++.... ++.....+ . ...+...+.- .+.......+++ ++|...++.+.+ |+..
T Consensus 173 l~~~~~-~p~~~~~l-~-------~~~~~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~ 233 (765)
T PRK10049 173 IDDANL-TPAEKRDL-E-------ADAAAELVRL----------SFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT 233 (765)
T ss_pred HHhCCC-CHHHHHHH-H-------HHHHHHHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 988765 22110000 0 0000000000 000000111222 555555555441 2221
Q ss_pred c-HH----HHHHHHHhcCChhHHHHHHHHHhhCCCC-CCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCc---hHHH
Q 048766 234 S-WN----SILTGYVNRNRVPEALHLFGEMQSKDVP-MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA---SIVV 304 (525)
Q Consensus 234 ~-~~----~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~ 304 (525)
. +. ..+..+...|++++|...|+.+.+.+.+ |+. ....+..++...|++++|...++.+.+..... ....
T Consensus 234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~ 312 (765)
T PRK10049 234 ADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEE 312 (765)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHH
Confidence 1 11 1133456778899999999988876522 222 11223445556666666666666554432110 0122
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCC----------CCCCCH---hH
Q 048766 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR----------DLQPDS---VT 371 (525)
Q Consensus 305 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~p~~---~~ 371 (525)
.. .+..++...|++++|+.+++++.... ...|+. ..
T Consensus 313 ~~-------------------------------~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 313 LA-------------------------------DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HH-------------------------------HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 22 33334445555555555555554421 012332 24
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHh
Q 048766 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASG 449 (525)
Q Consensus 372 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~ 449 (525)
+..+...+...|+ +++|+++++++... .+.++..+..++..+...|++++|++.+++. ...|+ ...+...+..+.
T Consensus 362 ~~~~a~~l~~~g~-~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 362 QSLLSQVAKYSND-LPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 4566677888888 99999999998753 3446788889999999999999999999987 55566 556667777888
Q ss_pred cCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 450 ACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 450 ~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
..|++++|+..++++++..|+++.+..
T Consensus 439 ~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999998886644
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=9.9e-19 Score=167.36 Aligned_cols=472 Identities=13% Similarity=0.094 Sum_probs=358.5
Q ss_pred hhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCC------CcccHHHHHHHHHhcCChHHHHHHH
Q 048766 19 DTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP------SVVSWNSLISGYVQSGKYRKALNLF 92 (525)
Q Consensus 19 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~A~~~~ 92 (525)
+..+.+.+...-..+ +.||.+.+.|...|--.|++..+..+...+... -..+|-.+.+++-..|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 334444444444443 567788888888888889999999988877652 2345778899999999999999999
Q ss_pred HHHHhcCCCCCHhh--HHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcC----CHHHHHHHHhhcc
Q 048766 93 VELERSEIYADAYS--FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG----SVEDAIGVFGEMI 166 (525)
Q Consensus 93 ~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~ 166 (525)
....+. .|+..+ +.-+...+.+.|+++.+...|+...+.. +.+..+...|...|...+ ..+.|..++.+..
T Consensus 331 ~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 331 MESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 888764 455433 4455677899999999999999998874 556778888888888775 5577777777776
Q ss_pred CC---ChhhHHHHHHHHHhCCChHHHHHHHhcC--------CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC------
Q 048766 167 DK---DIISWNSVIAASARNGNLELAFGFLHRL--------PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS------ 229 (525)
Q Consensus 167 ~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------ 229 (525)
++ |...|-.+...+....-+ .++..|..+ ....+...|.+...+...|++..|...|.....
T Consensus 408 ~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 408 EQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred hcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 64 555676666666554443 335554443 447788999999999999999999999987652
Q ss_pred -CCc------ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH-HHHHHHHHHhccccchHHHHHHHHHHHHhCCCch
Q 048766 230 -PNS------SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE-YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301 (525)
Q Consensus 230 -~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 301 (525)
++. .+-..+..++-..++++.|.+.|+.+... .|.- ..|..+.......++..+|...++.....+ ..+
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~n 563 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSN 563 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCC
Confidence 222 12344667777888999999999999886 4543 344444433445678889999999888776 566
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcc-----CCCHhHHHHHHHHHHh------------cCChhHHHHHHHHHhhCCC
Q 048766 302 IVVASALLDMYSKCGQVEIADSMFRSLC-----RKNLVTWNAMITGYAR------------NGDLTKVIELFEQLKTVRD 364 (525)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~ 364 (525)
+.+++.+...+.+...+..|.+-|..+. .+|+.+.-.|...|.+ .+..++|+++|.+..+
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--- 640 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--- 640 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---
Confidence 7777778889999999988888665553 3455555556665542 3457889999999988
Q ss_pred CCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh----CCCCchh
Q 048766 365 LQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSYGV 439 (525)
Q Consensus 365 ~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~ 439 (525)
..| |...-+.+.-.++..|+ +..|..+|..+++. ......+|-.+++.|..+|++..|+++|+.. ....+..
T Consensus 641 ~dpkN~yAANGIgiVLA~kg~-~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~ 717 (1018)
T KOG2002|consen 641 NDPKNMYAANGIGIVLAEKGR-FSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE 717 (1018)
T ss_pred cCcchhhhccchhhhhhhccC-chHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 556 67778888888899999 99999999999875 3345677999999999999999999999975 3345678
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc-------------------cChhHHHHHHHHHHH
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH-------------------GNWDVASVMRNFMRE 500 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~ 500 (525)
+...|..++.+.|.+.+|.+.+..++...|.++...+.++.+..+. +..++|.++|..|..
T Consensus 718 vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~ 797 (1018)
T KOG2002|consen 718 VLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSK 797 (1018)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999888777766443 346788889998888
Q ss_pred cCCc
Q 048766 501 RGLR 504 (525)
Q Consensus 501 ~~~~ 504 (525)
.+.+
T Consensus 798 ~~d~ 801 (1018)
T KOG2002|consen 798 NGDK 801 (1018)
T ss_pred cCCC
Confidence 7765
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=5.8e-20 Score=175.06 Aligned_cols=300 Identities=12% Similarity=0.078 Sum_probs=182.5
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCC---cchhhHHHHHHHhcCC
Q 048766 78 GYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG---VVIANCLIDMYGKCGS 154 (525)
Q Consensus 78 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 154 (525)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..++..|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4456677777777777777643 23445666677777777777777777777765421111 1345666666777777
Q ss_pred HHHHHHHHhhccC---CChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 048766 155 VEDAIGVFGEMID---KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231 (525)
Q Consensus 155 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 231 (525)
+++|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+...+...... ..
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------------------~~ 179 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-----------------------EI 179 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-----------------------HH
Confidence 7777777776654 234455555555555555555555555541110000000 00
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 048766 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311 (525)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (525)
...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|..+++++.+.+......++..++.+
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 258 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC 258 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH
Confidence 1123445556666777777777777766542 223445556666666777777777777776665433334556667777
Q ss_pred HHcCCCHHHHHHHHHhcc--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcC---CCCCc
Q 048766 312 YSKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH---TDIPF 386 (525)
Q Consensus 312 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~ 386 (525)
|...|++++|...++.+. .|+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+ .
T Consensus 259 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~---~~P~~~~~~~l~~~~~~~~~~g~-~ 334 (389)
T PRK11788 259 YQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR---RHPSLRGFHRLLDYHLAEAEEGR-A 334 (389)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCcCHHHHHHHHHHhhhccCCcc-c
Confidence 777777777777777765 34555556677777777777777777777776 56777777766665553 335 6
Q ss_pred chHHHHHHHhhhhhCCCCChh
Q 048766 387 DKVSEYFESMTKDYGIKPTVE 407 (525)
Q Consensus 387 ~~a~~~~~~~~~~~~~~~~~~ 407 (525)
+++..+++.+.+. ++.|++.
T Consensus 335 ~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 335 KESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred hhHHHHHHHHHHH-HHhCCCC
Confidence 7777777777765 6666654
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=3.2e-17 Score=164.06 Aligned_cols=426 Identities=10% Similarity=0.056 Sum_probs=265.4
Q ss_pred HHHHHHccCCHHHHHHHHhcCCC--CCcc-cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCCh
Q 048766 44 LMGFYRKINSLADAHKMFVEIPQ--PSVV-SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120 (525)
Q Consensus 44 ll~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 120 (525)
-+-...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.... ..........+...+...|++
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCH
Confidence 34445677888888888888776 4431 2237777777888888888888887621 111222233334567777888
Q ss_pred HHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHh--CCChHHHHHHHhcC--
Q 048766 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR--NGNLELAFGFLHRL-- 196 (525)
Q Consensus 121 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~-- 196 (525)
++|.++++++.+.. +.+..++..++..+...++.++|++.++++...+......+..++.. .++..+|+..++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 88888888888775 34566677777888888888888888888866443322223334333 55555588888887
Q ss_pred CCC-CcchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcccH------HHHHHHH-----HhcCC---hhHHHHHHHHH
Q 048766 197 PNP-DTISYNEVINGIAQFGDIEDAIMILSSMPS---PNSSSW------NSILTGY-----VNRNR---VPEALHLFGEM 258 (525)
Q Consensus 197 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~------~~l~~~~-----~~~~~---~~~a~~~~~~m 258 (525)
..| +...+..+..++.+.|-...|.++..+-+. +....+ ..+++.- ....+ .+.|+.-++.+
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 333 556677788888888888888887776542 111000 0111000 01112 24455555555
Q ss_pred hhC-CCCCC-HHHH----HHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCC-
Q 048766 259 QSK-DVPMD-EYTF----STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK- 331 (525)
Q Consensus 259 ~~~-~~~~~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 331 (525)
... +-.|. ...| .--+.++...++..+++..|+.+...+.+....+-.++.++|...+++++|+.+++.+...
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 442 11232 1222 2234466677788888888888877776656667777888888888888888888876421
Q ss_pred --------CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCC----------CCC--C-HhHHHHHHHHHcCCCCCcchHH
Q 048766 332 --------NLVTWNAMITGYARNGDLTKVIELFEQLKTVRD----------LQP--D-SVTFLNVLAACSHTDIPFDKVS 390 (525)
Q Consensus 332 --------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~p--~-~~~~~~l~~~~~~~~~~~~~a~ 390 (525)
+......|.-+|...+++++|..+++++.+... ..| | ...+..++..+...|+ +.+|+
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd-l~~Ae 436 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND-LPTAQ 436 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC-HHHHH
Confidence 122245667777778888888888887776320 012 2 1223344555666676 77777
Q ss_pred HHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
+.++++.. .-+-|......+.+.+...|++.+|.+.++.. ...|+ ..+....+.++...|++++|..+.+.+.+..
T Consensus 437 ~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 437 KKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 77777764 22336677777777777777777777777665 33444 3444556666667777777777777777777
Q ss_pred CCChhH
Q 048766 469 GDSDYV 474 (525)
Q Consensus 469 p~~~~~ 474 (525)
|+++.+
T Consensus 515 Pe~~~~ 520 (822)
T PRK14574 515 PEDIPS 520 (822)
T ss_pred CCchhH
Confidence 766644
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=8.2e-17 Score=161.15 Aligned_cols=418 Identities=11% Similarity=0.079 Sum_probs=312.8
Q ss_pred HHhccCchhhhhHHHHHHHHhCCCch-HHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHH---HHHHHhcCChHH
Q 048766 12 ASSDLGWDTYCQQLHCYILKSGFLSN-VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSL---ISGYVQSGKYRK 87 (525)
Q Consensus 12 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~ 87 (525)
...+.|++..|...|.+.++.. +-+ +.++ .++..+...|+.++|+..+++...|+...+..+ ...+...|++++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4568899999999999998885 333 3444 888889999999999999999988655544443 346777899999
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccC
Q 048766 88 ALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167 (525)
Q Consensus 88 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 167 (525)
|+++|+++.+.. +-+...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|++.++++.+
T Consensus 121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999999864 334667777788889999999999999999876 45555665555555556677679999999965
Q ss_pred --C-ChhhHHHHHHHHHhCCChHHHHHHHhcCCC---CCcchH------HHHHHHH-----HhcCCh---HHHHHHHhcC
Q 048766 168 --K-DIISWNSVIAASARNGNLELAFGFLHRLPN---PDTISY------NEVINGI-----AQFGDI---EDAIMILSSM 227 (525)
Q Consensus 168 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~------~~l~~~~-----~~~~~~---~~a~~~~~~~ 227 (525)
| +...+..+..++.+.|-...|.++.++-++ +....+ ...+..- ....++ +.|..-++.+
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 4 556778888999999999999999987642 111100 1111100 011222 3333333333
Q ss_pred CC-----CCccc-----HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhC
Q 048766 228 PS-----PNSSS-----WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297 (525)
Q Consensus 228 ~~-----~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 297 (525)
.. |.... ..-.+-++...|+..++++.|+.+...|.+....+-..+..+|...+++++|..++..+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 31 32211 223456778899999999999999999877677788999999999999999999999997653
Q ss_pred -----CCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC--C-------------CH---hHHHHHHHHHHhcCChhHHHH
Q 048766 298 -----LDASIVVASALLDMYSKCGQVEIADSMFRSLCR--K-------------NL---VTWNAMITGYARNGDLTKVIE 354 (525)
Q Consensus 298 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-------------~~---~~~~~l~~~~~~~~~~~~a~~ 354 (525)
.+++......|.-+|...+++++|..+++.+.+ | |. ..+..++..+...|+..+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 233455567889999999999999999998863 1 11 134456777889999999999
Q ss_pred HHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 355 LFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 355 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
.++++.. ..| |......+...+...|. +.+|.+.++... .+.|+ ..+....+..+...|++.+|..+.+.+
T Consensus 438 ~le~l~~---~aP~n~~l~~~~A~v~~~Rg~-p~~A~~~~k~a~---~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 438 KLEDLSS---TAPANQNLRIALASIYLARDL-PRKAEQELKAVE---SLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHh---hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999988 455 67888888899999999 999999997776 44664 667778888999999999999999876
Q ss_pred -CCCCchhHH
Q 048766 433 -GFGSYGVVW 441 (525)
Q Consensus 433 -~~~~~~~~~ 441 (525)
...|+....
T Consensus 511 ~~~~Pe~~~~ 520 (822)
T PRK14574 511 ISRSPEDIPS 520 (822)
T ss_pred HhhCCCchhH
Confidence 334544433
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=1.1e-15 Score=140.41 Aligned_cols=490 Identities=11% Similarity=0.069 Sum_probs=393.1
Q ss_pred hccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChHHHHH
Q 048766 14 SDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKALN 90 (525)
Q Consensus 14 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~ 90 (525)
....+.+.|.-++.+..+.- +.+...+ -+|++..-++.|..+++...+ .+...|.+-...--++|+.+...+
T Consensus 387 VelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 34445555666666666552 4444333 345556678888888877765 566677776666677888888888
Q ss_pred HHHHH----HhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCC--cchhhHHHHHHHhcCCHHHHHHHHhh
Q 048766 91 LFVEL----ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG--VVIANCLIDMYGKCGSVEDAIGVFGE 164 (525)
Q Consensus 91 ~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~ 164 (525)
++.+- ...|+..+...|..=...|-..|..-.++.+....+..|++.. ..+|..-...|.+.+.++-|..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 87764 4578888999998888889999999999999999888886543 46788888899999999999999988
Q ss_pred ccC---CChhhHHHHHHHHHhCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcccH
Q 048766 165 MID---KDIISWNSVIAASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS---PNSSSW 235 (525)
Q Consensus 165 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~ 235 (525)
.++ .+...|......--..|..+.-..+|++. .+.....|......+-..|++..|..++....+ .+...|
T Consensus 542 alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiw 621 (913)
T KOG0495|consen 542 ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIW 621 (913)
T ss_pred HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHH
Confidence 765 35567777777777789999999999988 334455677777778888999999999887764 455678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 048766 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315 (525)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (525)
.+-+.......+++.|..+|.+.... .|+...|..-+...--.++.++|.+++++.++.- +.-...|..+...+.+.
T Consensus 622 laavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHH
Confidence 88888899999999999999988764 6777777777777777889999999999888864 55667888899999999
Q ss_pred CCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHH
Q 048766 316 GQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392 (525)
Q Consensus 316 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~ 392 (525)
++.+.|.+.|..-. +..+..|-.+...--+.|..-+|..++++..-.+ +-+...|...+..-.+.|. .+.|..+
T Consensus 699 ~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn-~~~a~~l 775 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGN-KEQAELL 775 (913)
T ss_pred HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCC-HHHHHHH
Confidence 99999999998776 3456688888888888999999999999998843 3367888899999999999 9999999
Q ss_pred HHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
..++.+ ..+.+...|..-|.+..+.++-......+++-. .|+.+...+...+....+++.|.+.|.++++.+|++.
T Consensus 776 makALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 776 MAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 988876 556677788888888888888777777777753 5677788888889999999999999999999999999
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHHHHcCCccCCcccEEEecceecc
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAH 520 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (525)
.+|..+...+.+.|.-++-.+++.+..... |.-|..|.-+++++..
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~avSK~i~n 897 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVSKDIKN 897 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHhhhHHh
Confidence 999999999999999999999998877653 5667888888877654
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=2.2e-17 Score=145.20 Aligned_cols=271 Identities=11% Similarity=0.053 Sum_probs=209.9
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCcccHH----HHHH-HHHh-cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccc
Q 048766 209 NGIAQFGDIEDAIMILSSMPSPNSSSWN----SILT-GYVN-RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282 (525)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~l~~-~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 282 (525)
..+.+.|+++.|.+++.-..+.|..+-. .|-. -|.+ -.++..|.++-+..+... +-+......-.......|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 3567889999998888777654443322 2222 2222 345667777666655432 3344444444445567899
Q ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 048766 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQL 359 (525)
Q Consensus 283 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (525)
+++|...|++.+..........|+ +.-.+...|++++|...|-++. ..+....-.+...|-...+...|++++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999999887555555555 3445778899999999998875 567777888889999999999999999988
Q ss_pred hhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc
Q 048766 360 KTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY 437 (525)
Q Consensus 360 ~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 437 (525)
.. +.| |+..+..|...|-+.|+ -.+|.+++-+-.+ -++-+..+...|..-|....-+++|+..|++. -+.|+
T Consensus 585 ~s---lip~dp~ilskl~dlydqegd-ksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 585 NS---LIPNDPAILSKLADLYDQEGD-KSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred cc---cCCCCHHHHHHHHHHhhcccc-hhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 87 556 67888889999999998 8888887655443 45668899999999999999999999999997 67899
Q ss_pred hhHHHHHHHHHh-cCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccC
Q 048766 438 GVVWRALLSASG-ACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 438 ~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 487 (525)
..-|..++.+|. +.|++.+|..+|+......|.+...+..|.+++...|-
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999888875 58999999999999999999999999999999888774
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.6e-15 Score=132.73 Aligned_cols=406 Identities=11% Similarity=0.084 Sum_probs=277.1
Q ss_pred HHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHc--cCCHH------------------------HHHH
Q 048766 6 LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRK--INSLA------------------------DAHK 59 (525)
Q Consensus 6 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~------------------------~a~~ 59 (525)
=++|+. ...+|.+..+.-+++.|.+.|++.++.+...|+..-+- ..++- ...+
T Consensus 119 E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 119 ENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred hhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 344444 34678999999999999999998888877777665442 11111 1112
Q ss_pred HHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCc
Q 048766 60 MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139 (525)
Q Consensus 60 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 139 (525)
++-+....+..+|..+|.++++--..+.|.+++++......+.+..+||.+|.+-.-. ...+++.+|.+....||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCch
Confidence 3333333566789999999999999999999999999988899999999999875432 227899999999999999
Q ss_pred chhhHHHHHHHhcCCHHHHHHH----Hhhc----cCCChhhHHHHHHHHHhCCChHH-HHHHHhcC-----------C-C
Q 048766 140 VIANCLIDMYGKCGSVEDAIGV----FGEM----IDKDIISWNSVIAASARNGNLEL-AFGFLHRL-----------P-N 198 (525)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~----~~~~----~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~-----------~-~ 198 (525)
.|+|+++.+..+.|+++.|.+. +.+| ++|...+|..+|..+.+.++..+ +..++.++ . +
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 9999999999999999876554 4455 45888999999999999998755 44444433 1 1
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCCC--------CC---cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 048766 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPS--------PN---SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267 (525)
Q Consensus 199 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 267 (525)
.|...|...+..|....+.+-|..+..-... ++ ..-|..+....++....+..+.+|+.|.-+-.-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 2445677788888888898888877654431 22 234667778888889999999999999988788999
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHh--
Q 048766 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR-- 345 (525)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~-- 345 (525)
.+...++++....+.++-.-+++..+...|...+......++..+++..- .|+...-..+-....+
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------------HPLTPEREQLQVAFAKCA 501 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999988888755544444444444443320 1111111111111111
Q ss_pred cCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHH---HHHHHHhccCCh
Q 048766 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC---SMIRLMGQKGEV 422 (525)
Q Consensus 346 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~ 422 (525)
..-.+.....-.++.+ ..-.....+.++-.+.+.|. .++|.+++..+.+.+.--|.....+ .+++.-.+..++
T Consensus 502 ad~~e~~e~~~~R~r~---~~~~~t~l~~ia~Ll~R~G~-~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sp 577 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRA---QDWPATSLNCIAILLLRAGR-TQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSP 577 (625)
T ss_pred HHHHHHHHhhHHHHHh---ccCChhHHHHHHHHHHHcch-HHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCH
Confidence 0011222222334444 23334445566666677777 7788877777754433233333333 445555667777
Q ss_pred HHHHHHHHHh
Q 048766 423 WRAQRMIREL 432 (525)
Q Consensus 423 ~~A~~~~~~~ 432 (525)
-+|+.+++-+
T Consensus 578 sqA~~~lQ~a 587 (625)
T KOG4422|consen 578 SQAIEVLQLA 587 (625)
T ss_pred HHHHHHHHHH
Confidence 7777777766
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=2.3e-14 Score=137.05 Aligned_cols=466 Identities=12% Similarity=0.088 Sum_probs=294.9
Q ss_pred ccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhc---CCCCCcccHHHHHHHHHhcCChHHHHHH
Q 048766 15 DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE---IPQPSVVSWNSLISGYVQSGKYRKALNL 91 (525)
Q Consensus 15 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 91 (525)
..|++++|..++.++++.. +.+...|..|...|-..|+.+++...+-. +...|...|..+.....+.|++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3499999999999999887 78889999999999999999999876643 3335667888898888999999999999
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhH----HHHHHHhcCCHHHHHHHHhhccC
Q 048766 92 FVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC----LIDMYGKCGSVEDAIGVFGEMID 167 (525)
Q Consensus 92 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~ 167 (525)
|.+..+.. +++...+---...|-+.|+...|...|.++.....+.|..-... .+..+...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99998864 45555555556778888999999999999988754333333333 34556667777888888877744
Q ss_pred --C---ChhhHHHHHHHHHhCCChHHHHHHHhcCCC------C-------------------------------------
Q 048766 168 --K---DIISWNSVIAASARNGNLELAFGFLHRLPN------P------------------------------------- 199 (525)
Q Consensus 168 --~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~------------------------------------- 199 (525)
. +...++.++..+.+...++.+......... +
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 1 445677778888888777777766554411 0
Q ss_pred ------------------------CcchHHHHHHHHHhcCChHHHHHHHhcCCC----CCcccHHHHHHHHHhcCChhHH
Q 048766 200 ------------------------DTISYNEVINGIAQFGDIEDAIMILSSMPS----PNSSSWNSILTGYVNRNRVPEA 251 (525)
Q Consensus 200 ------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a 251 (525)
+...|..+..++...|++.+|..+|..+.. .+...|-.+..+|...|..+.|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 344555666677777777777777766653 3445677777777777777777
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHH--------HhCCCchHHHHHHHHHHHHcCCCHHHHHH
Q 048766 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI--------KQGLDASIVVASALLDMYSKCGQVEIADS 323 (525)
Q Consensus 252 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 323 (525)
.+.|+..+... +.+...-..|...+...|+.++|.+.+..+. ..++.|+..+.......+.+.|+.++=..
T Consensus 469 ~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 469 IEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 77777766541 2233344455556667777777777666632 22344555554455555555555543222
Q ss_pred HHHhcc----------C--------------------------------------------C-----------CHh----
Q 048766 324 MFRSLC----------R--------------------------------------------K-----------NLV---- 334 (525)
Q Consensus 324 ~~~~~~----------~--------------------------------------------~-----------~~~---- 334 (525)
+-..+. + + +..
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 111110 0 0 000
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHh---HH-HHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC---hh
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV---TF-LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT---VE 407 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---~~-~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 407 (525)
.+.-++..+++.+++++|+.+...+.+.....-+.. .+ ...+.+++..++ +..|..+++.+...++...+ ..
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d-~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARD-PGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 123345566777777777777777766431111222 11 233445555666 77787777777765433322 23
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh-CCCCch--hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL-GFGSYG--VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 484 (525)
.|+.......+.|+-.-=.+.+..+ ..+|+. ......+.....++.+..|+..+-++....|++|.+-..++.++..
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 3443344444444444334444433 222222 2222223334567888999999999999999888887777766644
No 31
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=6e-15 Score=131.29 Aligned_cols=407 Identities=12% Similarity=0.062 Sum_probs=257.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCC-cchhhHHHHHHHh
Q 048766 74 SLISGYVQSGKYRKALNLFVELERSEIYAD-AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG-VVIANCLIDMYGK 151 (525)
Q Consensus 74 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 151 (525)
....-|.++|++++|++.|.+..+ ..|| +..|.....+|...|+|+++.+--...++.+ |+ +..+..-.+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHh
Confidence 344556788899999999999887 4677 6777888888888899998888777776643 33 4455566667777
Q ss_pred cCCHHHHHHHHhhc--cCC-ChhhHHHHHHHHHhCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHh
Q 048766 152 CGSVEDAIGVFGEM--IDK-DIISWNSVIAASARNGNLELAFGFLHRLPN---PDTISYNEVINGIAQFGDIEDAIMILS 225 (525)
Q Consensus 152 ~g~~~~a~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 225 (525)
.|++++|+.=+.-. .+. +......++.-..+.--..++.+-+..-.. |+.....+....+...- - .
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~----~----~ 267 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP----K----P 267 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc----c----c
Confidence 78888775321111 000 000011111111111112222333331111 22222222222211000 0 0
Q ss_pred cCCCCCcccHHHHHHHHHh--cC---ChhHHHHHHHHHhhCC-CCC-----CHH----HHHHHH--HHhccccchHHHHH
Q 048766 226 SMPSPNSSSWNSILTGYVN--RN---RVPEALHLFGEMQSKD-VPM-----DEY----TFSTML--SGIAGLSALTWGML 288 (525)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~m~~~~-~~~-----~~~----~~~~l~--~~~~~~~~~~~a~~ 288 (525)
.+..+.......+..++.. .+ .+..|.+.+.+-.... ..+ |.. .-..++ .-+.-.|+.-.+..
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 0000111122222222111 11 2344444433322110 011 111 111111 12334577788888
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 048766 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365 (525)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 365 (525)
-++..++....+ ...|-.+..+|....+.++-...|+... +.|+.+|..-...+.-.+++++|..=|++... +
T Consensus 348 d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~---L 423 (606)
T KOG0547|consen 348 DFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS---L 423 (606)
T ss_pred hHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh---c
Confidence 888888776433 3336667778999999999999998886 45677888888888888999999999999998 7
Q ss_pred CCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc------
Q 048766 366 QPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY------ 437 (525)
Q Consensus 366 ~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~------ 437 (525)
.|+ ...|..+..+..+.+. +++++..|++..+ .++..+..|+...+.+...+++++|.+.|+.. ...|.
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k-~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v 500 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHK-IAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV 500 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc
Confidence 774 5777777777888888 9999999999987 56667889999999999999999999999976 33333
Q ss_pred ---hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 438 ---GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 438 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
+.+...++..-. .+++..|+.++.++++++|....++..|+....++|+.++|+++|++...
T Consensus 501 ~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 233333443333 38999999999999999999999999999999999999999999997643
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=3.8e-18 Score=153.74 Aligned_cols=258 Identities=16% Similarity=0.120 Sum_probs=113.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH-HHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 048766 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEY-TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315 (525)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (525)
.+...+.+.|++++|++++++......+|+.. -|..+...+...++.+.|...++.+...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44667778888888888886655443234433 34445556667788888888888887766 3356667777776 688
Q ss_pred CCHHHHHHHHHhcc--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHH
Q 048766 316 GQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393 (525)
Q Consensus 316 g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~ 393 (525)
+++++|.+++...- .+++..+..++..+...++++++.++++.+......+++...|..+...+.+.|+ .++|++.+
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~-~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD-PDKALRDY 169 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH-HHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 99999988887764 3556677788888999999999999999987654244567778888888999998 99999999
Q ss_pred HHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 394 ESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 394 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
++..+. .| ++.....++..+...|+.+++.++++.. ..+.++..|..++.++...|++++|+..++++.+..|+
T Consensus 170 ~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 999864 56 5778889999999999999988888876 22455677889999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
|+.+...++.++...|+.++|.+++.++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999987754
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.5e-13 Score=122.09 Aligned_cols=451 Identities=12% Similarity=0.101 Sum_probs=324.3
Q ss_pred hHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHh-hHHHHHH
Q 048766 37 NVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAY-SFTSALA 112 (525)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~ 112 (525)
+...|..-.+.=-..+++..|..+|+.... .+...|-..+..-.+..+...|..++++... +-|.+. .|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHH
Confidence 344444444444456778888999988876 5666787788888888899999999998876 345432 3444444
Q ss_pred HHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhc--cCCChhhHHHHHHHHHhCCChHHHH
Q 048766 113 ACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM--IDKDIISWNSVIAASARNGNLELAF 190 (525)
Q Consensus 113 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 190 (525)
.--..|++..|.++|+.-.+ ..|+...|++.|+.-.+.+.++.|..+++.. ..|++.+|-....--.+.|....+.
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 44567899999999988877 4799999999999999999999999999887 4588888988888888899998888
Q ss_pred HHHhcCCC------CCcchHHHHHHHHHhcCChHHHHHHHhcCCC--C---CcccHHHHHHHHHhcCChhHHHHH-----
Q 048766 191 GFLHRLPN------PDTISYNEVINGIAQFGDIEDAIMILSSMPS--P---NSSSWNSILTGYVNRNRVPEALHL----- 254 (525)
Q Consensus 191 ~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~----- 254 (525)
.+|+...+ .+...+.++...-..++.++.|.-+|.-..+ | ....|..+...--+-|+.....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 88888722 1233455555555567778888887765442 2 233455555555566665554443
Q ss_pred ---HHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCch------HHHHHHHHHHH---HcCCCHHHHH
Q 048766 255 ---FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS------IVVASALLDMY---SKCGQVEIAD 322 (525)
Q Consensus 255 ---~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~---~~~g~~~~A~ 322 (525)
|+.+...+ +.|-.+|--.++.-...|+.+...++|+.++..-.+.. ..+|..+=-++ ....+.+.+.
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444432 55777888888888888999999999998887642222 12222221111 2467888888
Q ss_pred HHHHhcc---CCCHh----HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHH
Q 048766 323 SMFRSLC---RKNLV----TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFES 395 (525)
Q Consensus 323 ~~~~~~~---~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 395 (525)
++++.+. +.... .|-.......++.+...|.+++..... ..|-..+|...|..-.+.+. ++....++++
T Consensus 387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG---~cPK~KlFk~YIelElqL~e-fDRcRkLYEk 462 (677)
T KOG1915|consen 387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG---KCPKDKLFKGYIELELQLRE-FDRCRKLYEK 462 (677)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc---cCCchhHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 9888775 23333 344445555678899999999998876 78989999999998888888 9999999999
Q ss_pred hhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHhCCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 396 MTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 396 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
..+ ..| +..+|...+..-...|+.+.|..+|+-+-..|. ...|.+.+..-...|.++.|..+|+++++..+
T Consensus 463 fle---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~- 538 (677)
T KOG1915|consen 463 FLE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ- 538 (677)
T ss_pred HHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc-
Confidence 884 455 677888888888889999999999998733443 34566666666788999999999999999887
Q ss_pred ChhHHHHHHHHHh-----hcc-----------ChhHHHHHHHHHHH
Q 048766 471 SDYVYVMLCNLYT-----SHG-----------NWDVASVMRNFMRE 500 (525)
Q Consensus 471 ~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 500 (525)
+.-+|...+..-. ..| ....|..+|++...
T Consensus 539 h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 539 HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 5557777666554 334 56678888877654
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=3.6e-13 Score=124.32 Aligned_cols=462 Identities=11% Similarity=0.040 Sum_probs=374.2
Q ss_pred HHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC--------CCcccHHHHHHHH
Q 048766 8 HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ--------PSVVSWNSLISGY 79 (525)
Q Consensus 8 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~ll~~~ 79 (525)
-|..++++..-++.|..++....+. ++.++..|..-...=-..|+.+.+.+++++-.. .+...|-.=...|
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3566788888999999999988766 577888887777666778999888888865432 4555666666777
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCC--HhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHH
Q 048766 80 VQSGKYRKALNLFVELERSEIYAD--AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED 157 (525)
Q Consensus 80 ~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 157 (525)
-..|..-.+..+......-|+.-. ..||..-...|.+.+.++-+..+|...++. ++.+..+|...+..--..|..+.
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHH
Confidence 788888888888888887776543 458888889999999999999999999886 45677888888888788899999
Q ss_pred HHHHHhhccC---CChhhHHHHHHHHHhCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcCC--C
Q 048766 158 AIGVFGEMID---KDIISWNSVIAASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSMP--S 229 (525)
Q Consensus 158 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~ 229 (525)
-..+|++... .....|-.....+...|+...|..++.+. .+.+...|..-+........++.|..+|.+.. .
T Consensus 569 l~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~s 648 (913)
T KOG0495|consen 569 LEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS 648 (913)
T ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC
Confidence 9999999865 35566777788888899999999999988 33456788888899999999999999998876 4
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHH
Q 048766 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309 (525)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 309 (525)
++...|.--+...--.++.++|++++++.++. ++.-...|..+...+.+.++.+.|...|..-.+.- +..+..+..+.
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLa 726 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLA 726 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHH
Confidence 77788888888878889999999999998876 34445677788888889999999988887666543 66778888899
Q ss_pred HHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCc
Q 048766 310 DMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386 (525)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 386 (525)
..-.+.|.+-.|+.+++... +.|...|-..|+.-.+.|+.+.|..++.+..+. .+.+...|..-|...-+.++ -
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~r-k 803 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQR-K 803 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCccc-c
Confidence 99999999999999999886 456779999999999999999999999998884 34455667677766666655 4
Q ss_pred chHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHH
Q 048766 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEV 464 (525)
Q Consensus 387 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 464 (525)
......++ ....|+.+...+...+....++++|.+.|.+. ...|| ..+|..+...+.++|.-+.-.+++.+.
T Consensus 804 Tks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 804 TKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred hHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44444444 33567788889999999999999999999987 55565 678888999999999999999999999
Q ss_pred HhhcCCChhHHHHHHHHH
Q 048766 465 IKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 465 ~~~~p~~~~~~~~l~~~~ 482 (525)
...+|.+...|.....--
T Consensus 878 ~~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 878 ETAEPTHGELWQAVSKDI 895 (913)
T ss_pred hccCCCCCcHHHHHhhhH
Confidence 999998877777665443
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=2.2e-13 Score=119.47 Aligned_cols=424 Identities=12% Similarity=0.084 Sum_probs=296.7
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHH--HcccCChHHH-HHHHHHHHHcccCCCcchhhHH
Q 048766 69 VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA--CGQLGSLQLG-MAIHSKIVKYSLERGVVIANCL 145 (525)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l 145 (525)
+.+-|.|++. ..+|....+.-+|+.|...|+..+...-..|++. |....++.-+ .+-|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3455666664 4678888999999999999988777766655544 3333333222 23344444444 3334444
Q ss_pred HHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcC----CCCCcchHHHHHHHHHhcCChHHHH
Q 048766 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAI 221 (525)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~ 221 (525)
+.|+..+ ++-+...+...++..+|.++++--..+.|.+++++. .+.+..+||.+|.+-.-..+-+-.-
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~ 262 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVA 262 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHH
Confidence 3455444 555566667789999999999999999999999988 4457788898887766555533333
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhcCChhH----HHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHH-HHHHHHHHH-
Q 048766 222 MILSSMPSPNSSSWNSILTGYVNRNRVPE----ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG-MLIHSCVIK- 295 (525)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~- 295 (525)
+....-..||..|+|+++++..+.|+++. |++++.+|.+-|+.|...+|..+|..+++.++..+. ..+...+..
T Consensus 263 EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 263 EMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 33333346999999999999999998765 578899999999999999999999999998887553 333333322
Q ss_pred ---hCC----CchHHHHHHHHHHHHcCCCHHHHHHHHHhccC--------CC---HhHHHHHHHHHHhcCChhHHHHHHH
Q 048766 296 ---QGL----DASIVVASALLDMYSKCGQVEIADSMFRSLCR--------KN---LVTWNAMITGYARNGDLTKVIELFE 357 (525)
Q Consensus 296 ---~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (525)
..+ +.+...|...+..|.+..+.+.|.++-.-+.. ++ ..-|..+....++....+....+|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 33566777888888899999999888776642 22 2246667788888899999999999
Q ss_pred HHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccC-Ch--------HH----
Q 048766 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG-EV--------WR---- 424 (525)
Q Consensus 358 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~---- 424 (525)
.|.-.- .-|+..+-..++++....+. ++-.-++|..+..- |...+......+...+++.. ++ ..
T Consensus 423 ~lVP~~-y~p~~~~m~~~lrA~~v~~~-~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak 499 (625)
T KOG4422|consen 423 DLVPSA-YFPHSQTMIHLLRALDVANR-LEVIPRIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAK 499 (625)
T ss_pred Hhccce-ecCCchhHHHHHHHHhhcCc-chhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 998877 88999999999999998888 99888999888754 65555544444555555443 11 00
Q ss_pred -HHHHHHH-------h-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc---CCCh--hHHHHHHHHHhhccChhH
Q 048766 425 -AQRMIRE-------L-GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE---GDSD--YVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 425 -A~~~~~~-------~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~--~~~~~l~~~~~~~g~~~~ 490 (525)
|..+++. + ...-.+......+..+.+.|..++|.+++....+.. |..| .+...+.+.-.+.++...
T Consensus 500 ~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 500 CAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 1111111 1 222334556666677788999999999999887644 4333 334566677777888999
Q ss_pred HHHHHHHHHHcCCccCCc
Q 048766 491 ASVMRNFMRERGLRKEAG 508 (525)
Q Consensus 491 A~~~~~~~~~~~~~~~~~ 508 (525)
|+..++-|...+.....+
T Consensus 580 A~~~lQ~a~~~n~~~~E~ 597 (625)
T KOG4422|consen 580 AIEVLQLASAFNLPICEG 597 (625)
T ss_pred HHHHHHHHHHcCchhhhH
Confidence 999999888877765443
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=5.9e-13 Score=118.33 Aligned_cols=472 Identities=14% Similarity=0.079 Sum_probs=346.1
Q ss_pred cCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC--CCcc-cHHHHHHHHHhcCChHHHHHHH
Q 048766 16 LGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ--PSVV-SWNSLISGYVQSGKYRKALNLF 92 (525)
Q Consensus 16 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~A~~~~ 92 (525)
++++..|..+|++.+..+ ..+...|..-+.+=.++..+..|.-+++.... |.+. .|-..+..--..|+...|.++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 467889999999998777 77888888888888899999999999988765 4432 4555555555679999999999
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCC--C-
Q 048766 93 VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK--D- 169 (525)
Q Consensus 93 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~- 169 (525)
++..+ ..|+...|.+.|+.-.+.+.++.|..+++..+-. .|++..|.-..+.-.+.|....+..+|+...+. |
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 99887 5899999999999999999999999999998874 599999999999999999999999999988652 2
Q ss_pred ---hhhHHHHHHHHHhCCChHHHHHHHhcC----CCC-CcchHHHHHHHHHhcCChHHHHHHHh---cC-----CC---C
Q 048766 170 ---IISWNSVIAASARNGNLELAFGFLHRL----PNP-DTISYNEVINGIAQFGDIEDAIMILS---SM-----PS---P 230 (525)
Q Consensus 170 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~---~~-----~~---~ 230 (525)
...+.+....-.++..++.|.-+|+-. +.. ....|..+...--+.|+.....+..- ++ .+ -
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 223444444445567788888887765 222 23455555555556676655544432 22 22 4
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH-------HHHHHHHHHh---ccccchHHHHHHHHHHHHhCCCc
Q 048766 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE-------YTFSTMLSGI---AGLSALTWGMLIHSCVIKQGLDA 300 (525)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~ 300 (525)
|-.+|-..+..-...|+.+...++|+..+.. ++|-. ..|..+--+| ....+.+.+.++++..++. +|.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 5567777888888899999999999999876 56532 2232222222 2467889999999999883 455
Q ss_pred hHHHHHHHHHHH----HcCCCHHHHHHHHHhcc--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHH
Q 048766 301 SIVVASALLDMY----SKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFL 373 (525)
Q Consensus 301 ~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~ 373 (525)
...++..+--+| .++.++..|.+++.... -|-..+|...|..-.+.++++.+..+|++..+ ..| |-.++.
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle---~~Pe~c~~W~ 475 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE---FSPENCYAWS 475 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---cChHhhHHHH
Confidence 556666554444 46889999999999887 56677888889988999999999999999999 566 568888
Q ss_pred HHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHHHHHHHHHh---
Q 048766 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASG--- 449 (525)
Q Consensus 374 ~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~--- 449 (525)
.....-...|+ .+.|..+|+-+...-.+......|...|+.-...|.++.|..+++++ ...+...+|..+...-.
T Consensus 476 kyaElE~~Lgd-tdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~ 554 (677)
T KOG1915|consen 476 KYAELETSLGD-TDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASAS 554 (677)
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccc
Confidence 88888888899 99999999998864233334556777777778899999999999997 44556667877765443
Q ss_pred --cCC-----------ChHHHHHHHHHHHhhc--CCChhH----HHHHHHHHhhccChhHHHHHHHHH
Q 048766 450 --ACS-----------DLDVARISAAEVIKLE--GDSDYV----YVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 450 --~~~-----------~~~~A~~~~~~~~~~~--p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
+.+ ....|..+|+++.... .++-.- +..+...-...|.-.+...+-++|
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 334 5678888999887643 111222 223333334456555555554444
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=1e-12 Score=125.98 Aligned_cols=315 Identities=16% Similarity=0.138 Sum_probs=217.3
Q ss_pred HHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCCh
Q 048766 44 LMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120 (525)
Q Consensus 44 ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 120 (525)
......-.|+.++|.+++.++.+ .+...|..|...|-+.|+.+++...+-..-..+ +-|...|..+.....+.|++
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 33333344999999999999876 567789999999999999999988775554432 44667888888889999999
Q ss_pred HHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCCh----h----hHHHHHHHHHhCCChHHHHHH
Q 048766 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI----I----SWNSVIAASARNGNLELAFGF 192 (525)
Q Consensus 121 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~l~~~~~~~~~~~~a~~~ 192 (525)
+.|.-.|.++++.. +++...+-.-+..|-+.|+...|...|.++...++ . .-...+..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999986 56677777778899999999999999999865332 1 223345667778888999998
Q ss_pred HhcCC-----CCCcchHHHHHHHHHhcCChHHHHHHHhcCCC--------------------------CCcccHH----H
Q 048766 193 LHRLP-----NPDTISYNEVINGIAQFGDIEDAIMILSSMPS--------------------------PNSSSWN----S 237 (525)
Q Consensus 193 ~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~----~ 237 (525)
++... ..+...++.++..+.+...++.|......... ++...|. -
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 88772 24566788888888888888888766544321 1111111 1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCC--CHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 048766 238 ILTGYVNRNRVPEALHLFGEMQSKDVPM--DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315 (525)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (525)
++-++.+....+....+........+.| +...|.-+..++...|++..|..++..+......-+..+|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2223333333333333333344444333 34456667777777777777777777777665555566777777777777
Q ss_pred CCHHHHHHHHHhccCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHh
Q 048766 316 GQVEIADSMFRSLCRK---NLVTWNAMITGYARNGDLTKVIELFEQLK 360 (525)
Q Consensus 316 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 360 (525)
|.++.|.+.|+.+... +...--.|...+.+.|+.++|.+++..+.
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 7777777777776522 33344445566667777777777777643
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.4e-13 Score=124.95 Aligned_cols=474 Identities=12% Similarity=0.033 Sum_probs=292.4
Q ss_pred HHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhc--CCCCCcccHHHHHHHHHhcC
Q 048766 6 LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE--IPQPSVVSWNSLISGYVQSG 83 (525)
Q Consensus 6 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~ll~~~~~~~ 83 (525)
+..+++-+..+.++..|.-+-+.+...+ .++...--+++++.-.|+++.|..+... +...|..+.......+.+..
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 4455555666667777777777766555 3444444567778778888888877754 33477777778888888888
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHh
Q 048766 84 KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163 (525)
Q Consensus 84 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 163 (525)
++++|..++..-. +.-+...|-.-=. +..-..+.+. ++ .+......++-.-...|....+.++|...|.
T Consensus 97 ~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~----~~--~~~~~essic~lRgk~y~al~n~~~ar~~Y~ 165 (611)
T KOG1173|consen 97 EWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAG----ED--LMINLESSICYLRGKVYVALDNREEARDKYK 165 (611)
T ss_pred HHHHHHHHhcccc---hhhcchhhcchhh--hceeccCccc----cc--ccccchhceeeeeeehhhhhccHHHHHHHHH
Confidence 8888888876331 1111111100000 0000011111 00 0111112222223344555566777777777
Q ss_pred hccCCChhhHHHHHHHHHhC-CChHHHHHHHhcC-----CCCCcchHHHHHHHHHhcCChHHHHHHH--hcCC--CCCcc
Q 048766 164 EMIDKDIISWNSVIAASARN-GNLELAFGFLHRL-----PNPDTISYNEVINGIAQFGDIEDAIMIL--SSMP--SPNSS 233 (525)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~--~~~~--~~~~~ 233 (525)
+....|+..+..+...-... =..++-..++... ...+......+.........-+.....- ..+. +.++.
T Consensus 166 ~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~d 245 (611)
T KOG1173|consen 166 EALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLD 245 (611)
T ss_pred HHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHH
Confidence 76666655444432211110 0111222333322 1111111111111110000000000000 0000 13444
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 048766 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313 (525)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (525)
.......-+...+++.+..++.++..+. .++....+..-|.++...|+..+-..+-..+.+.- |....+|-++.--|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHH
Confidence 4455556677788899999998888876 35666666666677777777777766666666654 666777888888888
Q ss_pred cCCCHHHHHHHHHhccCCC---HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchH
Q 048766 314 KCGQVEIADSMFRSLCRKN---LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKV 389 (525)
Q Consensus 314 ~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a 389 (525)
-.|+.++|++.|.+...-| ...|-.+...|+-.|..+.|+..|..+.+ .-|. ...+.-+..-|...++ .+.|
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar---l~~G~hlP~LYlgmey~~t~n-~kLA 399 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR---LMPGCHLPSLYLGMEYMRTNN-LKLA 399 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH---hccCCcchHHHHHHHHHHhcc-HHHH
Confidence 8899999999998876433 35788888999999999999998888777 3443 2223344445666777 8899
Q ss_pred HHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh--------CCCC-chhHHHHHHHHHhcCCChHHHHH
Q 048766 390 SEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL--------GFGS-YGVVWRALLSASGACSDLDVARI 459 (525)
Q Consensus 390 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 459 (525)
.++|.... ++.| |+...+-++-.....+.+.+|...|+.. +..+ -.+++..|+.+|.+.+.+++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99998887 5566 5777777777778888899998888865 1111 24567778888899999999999
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 460 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.+++++.+.|.++.++..++-+|...|+.+.|+..|.+....
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999888877654
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=2.8e-13 Score=119.69 Aligned_cols=258 Identities=10% Similarity=0.052 Sum_probs=191.2
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHH--HHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCC
Q 048766 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML--SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317 (525)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 317 (525)
..+.+.|+++.|.++++-+....-+.-...-+.|- .-+....++..|.++-+..+... ..+....+.-.+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 45788999999999998887654333222222222 22223446777777777666554 3344443333444456799
Q ss_pred HHHHHHHHHhccCCCHhHHHHH---HHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHH
Q 048766 318 VEIADSMFRSLCRKNLVTWNAM---ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFE 394 (525)
Q Consensus 318 ~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~ 394 (525)
+++|.+.+++....|...-..| .-.+-..|+.++|++.|-++..- +..+...+..+...|....+ ..+|++++-
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i--l~nn~evl~qianiye~led-~aqaie~~~ 582 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI--LLNNAEVLVQIANIYELLED-PAQAIELLM 582 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHhhC-HHHHHHHHH
Confidence 9999999999997776644443 34567789999999999988762 34456777788888888888 999999998
Q ss_pred HhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 395 SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
.... -++.|+.....|.+.|-+.|+-.+|.+..-+- -++.+..+...|..-|....-+++|+.+|+++--+.|.-.
T Consensus 583 q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 583 QANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred Hhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 7753 45668999999999999999999999886654 3445667777788888888889999999999999999544
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
..-...+.++.+.|++..|..+|+....+-+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 4445566778889999999999998876544
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=6.4e-14 Score=132.11 Aligned_cols=247 Identities=9% Similarity=0.013 Sum_probs=155.4
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHHHH--HHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHH
Q 048766 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFS--TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320 (525)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 320 (525)
.+.|+++.|...+.++.+. .|+..... .....+...|+++.|...++.+.+.. |.++.+...+...|.+.|+++.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 5556666666666665543 33332221 22344555566666666666665554 4455556666666666666666
Q ss_pred HHHHHHhccCC---CHh--------HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchH
Q 048766 321 ADSMFRSLCRK---NLV--------TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389 (525)
Q Consensus 321 A~~~~~~~~~~---~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a 389 (525)
|.+++..+.+. +.. +|..++.......+.+...++++.+.+. .+.+......+...+...|+ .++|
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~-~~~A 282 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLIECDD-HDTA 282 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCCC-HHHH
Confidence 66666655421 111 2223333333444556666666666442 23456677777788888888 8888
Q ss_pred HHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 048766 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
.+.+++..+. +|++... ++.+....++.+++++.++++ ...|+ +.....++..|.+.|++++|.+.|+++++.
T Consensus 283 ~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 283 QQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888777642 4554322 223334558888888888776 33444 556678888888889999999999999988
Q ss_pred cCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 468 EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 468 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.| +...+..++.++.+.|+.++|.+++++-...
T Consensus 358 ~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 358 RP-DAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88 5666778889999999999998888876543
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.3e-13 Score=119.65 Aligned_cols=327 Identities=14% Similarity=0.076 Sum_probs=240.6
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcc-cHHHHHHHHHhcC
Q 048766 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS-SWNSILTGYVNRN 246 (525)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~ 246 (525)
.|...+-.....+.+.|..+.|++.|......-+..|.+.+....-..+.+.+..+.......+.. .--.+..++....
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 354445555556667777777777777764433444444444433344444444444333221111 1122345566666
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCCCHHHHHHH
Q 048766 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD--ASIVVASALLDMYSKCGQVEIADSM 324 (525)
Q Consensus 247 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 324 (525)
+.+++++-.......|++.+...-+....+.....++++|+.+|+++.+...- .|..+|..++-.-.....+.---..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 88888888888888888877777777777778889999999999999988521 2566676665333222222222222
Q ss_pred HHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCC
Q 048766 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403 (525)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 403 (525)
.-.+.+--+.|..++..-|.-.++.++|...|++..+ +.|. ...|+.+.+-|....+ ...|++.++.+. .+.
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKN-t~AAi~sYRrAv---di~ 394 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKN-THAAIESYRRAV---DIN 394 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcc-cHHHHHHHHHHH---hcC
Confidence 2233344566778888888999999999999999999 7776 4666677777888888 999999999998 455
Q ss_pred C-ChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 404 P-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 404 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
| |-..|..|+++|.-.+.+.-|+-.|++. .. +.|...|.+|+..|.+.++.++|+.+|.+++..+--+..++..|+.
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 6 7788999999999999999999999998 33 4468899999999999999999999999999998778899999999
Q ss_pred HHhhccChhHHHHHHHHHHHc
Q 048766 481 LYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~ 501 (525)
+|.+.++..+|.+++++.++.
T Consensus 475 Lye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999988763
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=6e-13 Score=125.55 Aligned_cols=248 Identities=15% Similarity=0.015 Sum_probs=175.9
Q ss_pred HhcCChHHHHHHHhcCCC--CCcccHH--HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHH
Q 048766 212 AQFGDIEDAIMILSSMPS--PNSSSWN--SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287 (525)
Q Consensus 212 ~~~~~~~~a~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 287 (525)
.+.|+++.|...+.++.+ |+..... .....+...|+++.|...++++.+.. +-++..+..+...+.+.|+++++.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 445555555555555443 2222111 22445666677777777777766653 334556666666777777777777
Q ss_pred HHHHHHHHhCCCchH-------HHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHH
Q 048766 288 LIHSCVIKQGLDASI-------VVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFE 357 (525)
Q Consensus 288 ~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (525)
.++..+.+.+..++. .++..++.......+.+...++++.++ +.++.....+...+...|+.++|.++++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777666543222 122333444444556677788888876 4577788889999999999999999999
Q ss_pred HHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC
Q 048766 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS 436 (525)
Q Consensus 358 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 436 (525)
+..+ ..|+... .++.+....++ .+++.+..+...+. .+-|+..+..+++.+.+.|++++|.+.|+.. ...|
T Consensus 288 ~~l~---~~~~~~l--~~l~~~l~~~~-~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 288 DGLK---RQYDERL--VLLIPRLKTNN-PEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHh---cCCCHHH--HHHHhhccCCC-hHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9988 4555532 23344445577 89999999999864 3446777889999999999999999999997 7789
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 437 YGVVWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 437 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
+...+..+...+.+.|+.++|.+++++.+.+-
T Consensus 360 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 360 DAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99998899999999999999999999998754
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.1e-12 Score=116.40 Aligned_cols=357 Identities=16% Similarity=0.143 Sum_probs=248.2
Q ss_pred ccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcc-hHHHHHHHHH
Q 048766 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI-SYNEVINGIA 212 (525)
Q Consensus 134 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~ 212 (525)
+...|...+-.....+.+.|..+.|+..|...+..-+..|.+.+....-.-+.+.+..+....+..+.. .--.+..++-
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 345566666666667778899999999999887765666665555443344444444333333221111 1112334555
Q ss_pred hcCChHHHHHHHhcCCC---CC-cccHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCCHHHHHHHHHHhccccchHHH
Q 048766 213 QFGDIEDAIMILSSMPS---PN-SSSWNSILTGYVNRNRVPEALHLFGEMQSKDV--PMDEYTFSTMLSGIAGLSALTWG 286 (525)
Q Consensus 213 ~~~~~~~a~~~~~~~~~---~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 286 (525)
.....+++..-.+.... |+ ...-+....+.-...++++|+.+|+++.++.. --|..+|..++-.-....++
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL--- 315 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL--- 315 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH---
Confidence 55566666555544432 22 22233334455567899999999999998731 12456676665443322221
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCC---HhHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 048766 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN---LVTWNAMITGYARNGDLTKVIELFEQLKTVR 363 (525)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 363 (525)
.++.+-.-.--+-.+.+.-.+.+-|.-.++.++|...|+...+.| ...|+.+.+-|....+...|++-|+++.+
T Consensus 316 -s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd-- 392 (559)
T KOG1155|consen 316 -SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD-- 392 (559)
T ss_pred -HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--
Confidence 111111111113445666778888888999999999999987544 45799999999999999999999999999
Q ss_pred CCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchh
Q 048766 364 DLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGV 439 (525)
Q Consensus 364 ~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~ 439 (525)
+.| |-..|-.+.++|.-.+. +.=|+-+|++..+ ++| |+..|..|++.|.+.++.++|++.|.+. ....+..
T Consensus 393 -i~p~DyRAWYGLGQaYeim~M-h~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 393 -INPRDYRAWYGLGQAYEIMKM-HFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred -cCchhHHHHhhhhHHHHHhcc-hHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 667 77899999999999998 8999999999874 455 7899999999999999999999999987 3344567
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhh-------cCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKL-------EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.+..++..|-+.++..+|...|++-++. +|....+...|+.-+.+.+++++|..+-......
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 8889999999999999999999998872 3444455556888889999999998876665544
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4.8e-14 Score=130.70 Aligned_cols=279 Identities=14% Similarity=0.113 Sum_probs=221.5
Q ss_pred CChHHHHHHHhcCCC--CCc-ccHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCCHHHHHHHHHHhccccchHHHHHH
Q 048766 215 GDIEDAIMILSSMPS--PNS-SSWNSILTGYVNRNRVPEALHLFGEMQSKD--VPMDEYTFSTMLSGIAGLSALTWGMLI 289 (525)
Q Consensus 215 ~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 289 (525)
-+.++|...|..+++ +|+ .....+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+..+-+. -+...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 357889999988653 333 345667889999999999999999998752 122556677666554321 12222
Q ss_pred H-HHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCC---HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 048766 290 H-SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN---LVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365 (525)
Q Consensus 290 ~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 365 (525)
+ +.+.+.. +..+.+|-++.++|.-+++.+.|++.|++..+.| ..+|+.+..-+.....+|.|...|+.... +
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~ 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---V 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---C
Confidence 2 2333333 6778999999999999999999999999998544 46888888888999999999999999877 6
Q ss_pred CCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHH
Q 048766 366 QPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVW 441 (525)
Q Consensus 366 ~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~ 441 (525)
.|. -..|..+...|.+.++ ++.|+-.|+++. .+.| +......++..+.+.|+.++|+.+++++ ..+| ++..-
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek-~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEK-LEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred CchhhHHHHhhhhheeccch-hhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 664 4667778888999999 999999999988 6677 4566777888999999999999999997 3333 44455
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
...+..+...+++++|+..++++.++-|++..++..++..|.+.|+.+.|+..|.-+.+..++.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 5566777788999999999999999999999999999999999999999999998887766543
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=1.3e-12 Score=124.12 Aligned_cols=251 Identities=13% Similarity=-0.028 Sum_probs=119.7
Q ss_pred HHHHhcCChHHHHHHHhcCCC--CCcc--cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchH
Q 048766 209 NGIAQFGDIEDAIMILSSMPS--PNSS--SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284 (525)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~~~~--~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 284 (525)
.+....|+.+.|.+.+.+..+ |+.. ........+...|+++.|...++.+.+.. +-+...+..+...+...|+++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence 334444555555555444321 2221 12223455555666666666666666553 224445555556666666666
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHH-------HcCCCHHHHHHHHHhccC---CCHhHHHHHHHHHHhcCChhHHHH
Q 048766 285 WGMLIHSCVIKQGLDASIVVASALLDMY-------SKCGQVEIADSMFRSLCR---KNLVTWNAMITGYARNGDLTKVIE 354 (525)
Q Consensus 285 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 354 (525)
.+...+..+.+.+..+.......-..++ ......+...+.++..+. .++..+..++..+...|+.+.|.+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 205 ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 6666666666554332222111111111 111222333344444432 245555555566666666666666
Q ss_pred HHHHHhhCCCCCCCHhHHH-HHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-
Q 048766 355 LFEQLKTVRDLQPDSVTFL-NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL- 432 (525)
Q Consensus 355 ~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 432 (525)
++++..+ ..||..... .++..+ .....++.+.+.+.+++.
T Consensus 285 ~l~~~l~---~~pd~~~~~~~~l~~~-----------------------------------~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 285 IIFDGLK---KLGDDRAISLPLCLPI-----------------------------------PRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHh---hCCCcccchhHHHHHh-----------------------------------hhcCCCChHHHHHHHHHHH
Confidence 6666655 333332100 011111 111123334444444433
Q ss_pred CCCCc-h--hHHHHHHHHHhcCCChHHHHHHHH--HHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHH
Q 048766 433 GFGSY-G--VVWRALLSASGACSDLDVARISAA--EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 433 ~~~~~-~--~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
...|+ + ....++++.+.+.|++++|.+.|+ .+++..| ++..+..++.++.+.|+.++|.++|++..
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12222 2 344566666666666666666666 3445556 34445566666666666666666666543
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=7.7e-13 Score=125.54 Aligned_cols=258 Identities=10% Similarity=0.023 Sum_probs=182.2
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCH-HHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHH
Q 048766 243 VNRNRVPEALHLFGEMQSKDVPMDE-YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321 (525)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 321 (525)
...|+++.|.+.+.+..+. .|++ ..+.....+....|+.+.+..++....+....+...+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4578888888888776654 3443 334455667777888888888888887655333334445567888889999999
Q ss_pred HHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHH----HHHHHHcCCCC---CcchHHH
Q 048766 322 DSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL----NVLAACSHTDI---PFDKVSE 391 (525)
Q Consensus 322 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~~~---~~~~a~~ 391 (525)
.+.++.+. +.+...+..+...+...|++++|.+.+..+.+.+ .. +...+. .........+. ..+...+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-LF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-CC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99998886 3466788888999999999999999999999876 33 322221 11111122222 0334444
Q ss_pred HHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhH---HHHHHHHHhcCCChHHHHHHHHHHHhh
Q 048766 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVV---WRALLSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
.++...+ ..+.++..+..++..+...|++++|.+.+++. ...|+... ...........++.+.+++.+++.++.
T Consensus 251 ~~~~~p~--~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPR--HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCH--HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 4443322 12347888999999999999999999999987 54555442 122222234458899999999999999
Q ss_pred cCCCh--hHHHHHHHHHhhccChhHHHHHHHHHHHcCCccC
Q 048766 468 EGDSD--YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506 (525)
Q Consensus 468 ~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 506 (525)
.|+|+ .....+++++.+.|+|++|.++|++.......|+
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 99999 8899999999999999999999995444333333
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=5.3e-14 Score=130.43 Aligned_cols=275 Identities=13% Similarity=0.080 Sum_probs=221.0
Q ss_pred CChHHHHHHHhcCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhcCCC------CCcccHHHHHHHHHhcCChhHHHHH
Q 048766 184 GNLELAFGFLHRLPN--P-DTISYNEVINGIAQFGDIEDAIMILSSMPS------PNSSSWNSILTGYVNRNRVPEALHL 254 (525)
Q Consensus 184 ~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~ 254 (525)
-+..+|+..|..++. + ...+...+..+|...+++++|+++|+.+.+ .+...|.+.+..+-+ +-++..
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 346788888888632 2 234566788899999999999999998874 466778888776543 333444
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHh
Q 048766 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334 (525)
Q Consensus 255 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 334 (525)
+-+-+-.--+-.+.+|.++..+|.-+++.+.|+..|++..+.+ +....+|+.+..-+....++|.|...|+.....|+.
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 4332222235577899999999999999999999999998876 457889999999999999999999999999877766
Q ss_pred HH---HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHH
Q 048766 335 TW---NAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHC 409 (525)
Q Consensus 335 ~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 409 (525)
.| ..++..|.+.++++.|+-.|+++.+ +.|. .+....+...+.+.|+ .++|+++++++.. ++| |+..-
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~-~d~AL~~~~~A~~---ld~kn~l~~ 560 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKR-KDKALQLYEKAIH---LDPKNPLCK 560 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhh-hhHHHHHHHHHHh---cCCCCchhH
Confidence 55 4567889999999999999999999 7784 5666777778888898 9999999999984 455 55555
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
..-+..+...+++++|+..++++ ...|+ ...+..++..|.+.|+.+.|+..|.-+..++|.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 66678888999999999999998 44454 667888899999999999999999999999984
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=3.7e-15 Score=134.37 Aligned_cols=251 Identities=14% Similarity=0.129 Sum_probs=109.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcC-CC----CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccc
Q 048766 206 EVINGIAQFGDIEDAIMILSSM-PS----PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280 (525)
Q Consensus 206 ~l~~~~~~~~~~~~a~~~~~~~-~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 280 (525)
.+...+.+.|++++|.+++++. .. .+...|..+.......++++.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3455556666666666666432 11 23444555566666777888888888887765422 44555566655 677
Q ss_pred cchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc-----CCCHhHHHHHHHHHHhcCChhHHHHH
Q 048766 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC-----RKNLVTWNAMITGYARNGDLTKVIEL 355 (525)
Q Consensus 281 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~ 355 (525)
+++++|..++....+.. +++..+..++..+.+.++++.+.++++.+. +.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888887776665443 455566677788888999999998888864 34667888889999999999999999
Q ss_pred HHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-C
Q 048766 356 FEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-G 433 (525)
Q Consensus 356 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 433 (525)
+++..+ ..|+ ......++..+...|+ .+++.++++...+. .+.++..+..++.+|...|++++|+..+++. .
T Consensus 169 ~~~al~---~~P~~~~~~~~l~~~li~~~~-~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 169 YRKALE---LDPDDPDARNALAWLLIDMGD-YDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHH---H-TT-HHHHHHHHHHHCTTCH-HHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHH---cCCCCHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 999999 6775 6778889999999998 99999999888764 2567788899999999999999999999997 3
Q ss_pred -CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 434 -FGSYGVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 434 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
.+.|+.....++.++...|+.++|.++.+++++
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 344677788899999999999999999998875
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=2.6e-12 Score=108.90 Aligned_cols=298 Identities=13% Similarity=0.096 Sum_probs=191.4
Q ss_pred CCChHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHhcCCC-CCcc------cHHHHHHHHHhcCChhHHH
Q 048766 183 NGNLELAFGFLHRLPNPDT---ISYNEVINGIAQFGDIEDAIMILSSMPS-PNSS------SWNSILTGYVNRNRVPEAL 252 (525)
Q Consensus 183 ~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~------~~~~l~~~~~~~~~~~~a~ 252 (525)
.++.++|.++|-+|.+.|+ .+..+|.+.|.+.|.+|.|+++.+.+.+ ||.. ....|..-|...|-+|.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3445555555555533322 2334566667777777777777666653 3322 1233455566677777777
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCC
Q 048766 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332 (525)
Q Consensus 253 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 332 (525)
++|..+.+.| ..-...... |+..|....+|++|+.+-+++.+.+
T Consensus 128 ~~f~~L~de~-efa~~Alqq-----------------------------------Ll~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQ-----------------------------------LLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHHHHHhcch-hhhHHHHHH-----------------------------------HHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 7777766543 122233333 4445555555555555544443211
Q ss_pred H--------hHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHh-HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCC
Q 048766 333 L--------VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV-TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403 (525)
Q Consensus 333 ~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 403 (525)
. ..|.-+...+....+.+.|..++.+..+ ..|+.. .-..+.......|+ ++.|.+.++.+.+. +..
T Consensus 172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~-y~~AV~~~e~v~eQ-n~~ 246 (389)
T COG2956 172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIILGRVELAKGD-YQKAVEALERVLEQ-NPE 246 (389)
T ss_pred CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhhhHHHHhccc-hHHHHHHHHHHHHh-ChH
Confidence 1 1344455556667788888888888887 455433 33344556677777 88888888888754 323
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 404 PTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
--+.+...|..+|...|+.++...++.++ ...+.......+........-.+.|...+.+-+...| +...+..|+...
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~ 325 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhh
Confidence 33666778888888888888888888876 4445555555555555556667888888888888899 666677777665
Q ss_pred hh---ccChhHHHHHHHHHHHcCCccCCcccEEEecceecccc
Q 048766 483 TS---HGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAHSS 522 (525)
Q Consensus 483 ~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (525)
.. .|++.+-+..+.+|+...++..|....-.++...|+|.
T Consensus 326 l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 326 LADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred hccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 33 46688889999999999999999888888888888764
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=4.2e-11 Score=107.25 Aligned_cols=410 Identities=12% Similarity=0.027 Sum_probs=249.7
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCC--CC-cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-hhHHHHHHHHcccC
Q 048766 43 ALMGFYRKINSLADAHKMFVEIPQ--PS-VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADA-YSFTSALAACGQLG 118 (525)
Q Consensus 43 ~ll~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~ 118 (525)
....-|-+.|++++|++.|.+..+ |+ +..|.....+|...|+|+++.+--.+..+ +.|+- ..+..-.+++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhc
Confidence 344556677888888888888776 66 66777777788888888888877777766 34542 23444445555667
Q ss_pred ChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCC
Q 048766 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN 198 (525)
Q Consensus 119 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 198 (525)
++++|..=....-=.+--.+..+--.+=+.+-+.|. ..+.+-+.+=..| +..-...+..|...=..+--.. +..
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~-~ka~e~~k~nr~p-~lPS~~fi~syf~sF~~~~~~~----~~~ 271 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM-KKAKEKLKENRPP-VLPSATFIASYFGSFHADPKPL----FDN 271 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH-HHHHHhhcccCCC-CCCcHHHHHHHHhhcccccccc----ccC
Confidence 776665433222111111111111111111111111 1122222210111 1111122222221111000000 000
Q ss_pred CCcchHHHHHHHHHh-----cCChHHHHHHHhcCC-------CCC---------cccHHHHHHHHHhcCChhHHHHHHHH
Q 048766 199 PDTISYNEVINGIAQ-----FGDIEDAIMILSSMP-------SPN---------SSSWNSILTGYVNRNRVPEALHLFGE 257 (525)
Q Consensus 199 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~-------~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (525)
+.......+..++.. ...+..|...+.+-. ..+ ..+.......+.-.|+.-.|..-|+.
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence 111111112111111 012233333322211 111 11122222335567899999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCC---CHh
Q 048766 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK---NLV 334 (525)
Q Consensus 258 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 334 (525)
.+.....++. .|.-+..+|....+.++....|....+.+ +.++.+|..-..++.-.++++.|..=|++.... +..
T Consensus 352 ~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~ 429 (606)
T KOG0547|consen 352 AIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY 429 (606)
T ss_pred HHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH
Confidence 9887433332 27777778999999999999999999887 667777777778888889999999999998743 455
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC---------
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT--------- 405 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------- 405 (525)
.|-.+..+..+.+++++++..|++.++. ++.-+..|+.....+...++ ++.|.+.|+..++. .|+
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqq-Fd~A~k~YD~ai~L---E~~~~~~~v~~~ 503 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQ-FDKAVKQYDKAIEL---EPREHLIIVNAA 503 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHh-HHHHHHHHHHHHhh---ccccccccccch
Confidence 6777777777889999999999999984 34457889999999999999 99999999998853 343
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
+.+...++..-.+ +++..|.+++++. ...|. ...+..|...-.+.|+.++|+++|++...+.-
T Consensus 504 plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 504 PLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333333333334 8999999999987 55665 56788899999999999999999999987653
No 51
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=3.4e-11 Score=115.34 Aligned_cols=455 Identities=16% Similarity=0.104 Sum_probs=266.4
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC----CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048766 24 QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ----PSVVSWNSLISGYVQSGKYRKALNLFVELERSE 99 (525)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 99 (525)
.++..+...|+.|+..+|.++|.-||..|+++.|- +|.-|.- .+...++.++.+..++++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45666677778888888888888888888887777 6665543 34456777777766777666554
Q ss_pred CCCCHhhHHHHHHHHcccCChHH---HHHHHHHHH----Hccc--------------CCCcchhhHHHHHHHhcCCHHHH
Q 048766 100 IYADAYSFTSALAACGQLGSLQL---GMAIHSKIV----KYSL--------------ERGVVIANCLIDMYGKCGSVEDA 158 (525)
Q Consensus 100 ~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~----~~~~--------------~~~~~~~~~l~~~~~~~g~~~~a 158 (525)
.|.+.||..|+.+|...||+.. .++.+.... ..|+ +.....-...+......|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777544 222111111 1111 11111123344555566777777
Q ss_pred HHHHhhccCC--ChhhHHHHHHHHHhCCC-hHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChHHHHHHHhcCCCC----
Q 048766 159 IGVFGEMIDK--DIISWNSVIAASARNGN-LELAFGFLHRLPN-PDTISYNEVINGIAQFGDIEDAIMILSSMPSP---- 230 (525)
Q Consensus 159 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 230 (525)
++++..++.. +. +....++-+..... +++-..+.+.... ++..+|...+..-...|+++.|..++.+|.+.
T Consensus 159 lkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred HHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 7777666442 11 11112444433333 3444444444443 88888888888888899999999999888752
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHH-----------HHHHHH-----
Q 048766 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML-----------IHSCVI----- 294 (525)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-----------~~~~~~----- 294 (525)
...-|-.++-+ .++...+..+++-|.+.|+.|+..|+...+..+...|....+.. ++..+.
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a 314 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLA 314 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHh
Confidence 22333444433 77888888888888889999999998888777776443221110 011110
Q ss_pred --------------------HhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCC-------CHhHHHHHHHHHHhcC
Q 048766 295 --------------------KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK-------NLVTWNAMITGYARNG 347 (525)
Q Consensus 295 --------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~ 347 (525)
-.|+.....+|..... ...+|.-+..+++...+..| ++..|..++.-|.+.-
T Consensus 315 ~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~ 393 (1088)
T KOG4318|consen 315 NKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRI 393 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHH
Confidence 0122222222222222 22256666666666655422 3344544444443211
Q ss_pred ----------------------ChhHHHHHHHHHhhCCCCCCCHh----------------------------HHHHHHH
Q 048766 348 ----------------------DLTKVIELFEQLKTVRDLQPDSV----------------------------TFLNVLA 377 (525)
Q Consensus 348 ----------------------~~~~a~~~~~~~~~~~~~~p~~~----------------------------~~~~l~~ 377 (525)
+..+..+.... ..||.. .-+.++.
T Consensus 394 e~~~~~~i~~~~qgls~~l~se~tp~vsell~~------lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l 467 (1088)
T KOG4318|consen 394 ERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN------LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHL 467 (1088)
T ss_pred HhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH------hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 11111111111 122211 1122333
Q ss_pred HHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhC-----CCCchhHHHHHHHHHhcCC
Q 048766 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG-----FGSYGVVWRALLSASGACS 452 (525)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 452 (525)
.|+...+ ..+++..-+..... -+ +..|..|++.+......+.|..+..+.. ..-+..-+..+.....+.+
T Consensus 468 ~l~se~n-~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~ 542 (1088)
T KOG4318|consen 468 TLNSEYN-KLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLA 542 (1088)
T ss_pred HHHHHHH-HHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhH
Confidence 3333333 33333332222211 11 2567888999999999999999999872 2233445566777788888
Q ss_pred ChHHHHHHHHHHHhhc---CCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCccC
Q 048766 453 DLDVARISAAEVIKLE---GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506 (525)
Q Consensus 453 ~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 506 (525)
....+..++++..+.- |.-...+..+.......|+.+...++.+-+...|+..+
T Consensus 543 ~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et 599 (1088)
T KOG4318|consen 543 ILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET 599 (1088)
T ss_pred HHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc
Confidence 8999999998888743 44456677777888889999999999999999888763
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=2.1e-11 Score=106.66 Aligned_cols=284 Identities=15% Similarity=0.102 Sum_probs=146.0
Q ss_pred CCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCCCC----CcccHHHHHHHHHhcCChhHHHHHH
Q 048766 183 NGNLELAFGFLHRLPN---PDTISYNEVINGIAQFGDIEDAIMILSSMPSP----NSSSWNSILTGYVNRNRVPEALHLF 255 (525)
Q Consensus 183 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 255 (525)
.|++.+|+++..+..+ .....|..-+.+--..|+.+.+-+++.+..++ +....-+........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5666666666655522 12222333334444455555555555554431 2222333344445555555555555
Q ss_pred HHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhH
Q 048766 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335 (525)
Q Consensus 256 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 335 (525)
+++.+.+ +-.+........+|.+.|++.....++..+.+.+.-.+...-.. ...+
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l------------------------e~~a 231 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL------------------------EQQA 231 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH------------------------HHHH
Confidence 5555442 22333444444455555555555555555554443322211000 1124
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHH
Q 048766 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415 (525)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 415 (525)
|+.+++-....+..+.-...|+..... .+-++..-..++.-+...|. .++|.++.++..+. +.+|+. ..+ -.
T Consensus 232 ~~glL~q~~~~~~~~gL~~~W~~~pr~--lr~~p~l~~~~a~~li~l~~-~~~A~~~i~~~Lk~-~~D~~L---~~~-~~ 303 (400)
T COG3071 232 WEGLLQQARDDNGSEGLKTWWKNQPRK--LRNDPELVVAYAERLIRLGD-HDEAQEIIEDALKR-QWDPRL---CRL-IP 303 (400)
T ss_pred HHHHHHHHhccccchHHHHHHHhccHH--hhcChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHh-ccChhH---HHH-Hh
Confidence 555555555445555545555554442 23344445555666666666 66666666666554 444431 111 12
Q ss_pred HhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHH
Q 048766 416 MGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493 (525)
Q Consensus 416 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 493 (525)
..+.++...-++..++. ..+.++..+.+|+..|.+.+.+.+|...|+.+++..| +...|..++.++.+.|+..+|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHH
Confidence 23445555555554443 2222345666777777777777777777777777777 66777777777777777777777
Q ss_pred HHHHHHH
Q 048766 494 MRNFMRE 500 (525)
Q Consensus 494 ~~~~~~~ 500 (525)
.+++..-
T Consensus 383 ~r~e~L~ 389 (400)
T COG3071 383 VRREALL 389 (400)
T ss_pred HHHHHHH
Confidence 7766653
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=6.3e-11 Score=103.77 Aligned_cols=282 Identities=13% Similarity=0.058 Sum_probs=220.7
Q ss_pred hcCCHHHHHHHHhhccCC---ChhhHHHHHHHHHhCCChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHH
Q 048766 151 KCGSVEDAIGVFGEMIDK---DIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMI 223 (525)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~ 223 (525)
..|++..|++...+-.+. ....|..-+.+--+.|+.+.+-.++.+.. +++..+..+........|+.+.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 369999999999887553 33456666677888999999999999982 44555677788889999999999888
Q ss_pred HhcCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCc
Q 048766 224 LSSMP---SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300 (525)
Q Consensus 224 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 300 (525)
.+++. ..++.......++|.+.|++...+.++.++.+.|.-.++..- ..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----------------------------~l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----------------------------RL 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------------------HH
Confidence 77765 356677888999999999999999999999999865554321 11
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHH
Q 048766 301 SIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377 (525)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 377 (525)
...++..+++-....+..+.-...++..+ +.++..-.+++.-+...|+.++|.++.++..+++ .+|+ ....-
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~-~D~~----L~~~~ 302 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ-WDPR----LCRLI 302 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-cChh----HHHHH
Confidence 23345555555555555555666777776 4467777778888899999999999999998877 6666 23334
Q ss_pred HHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHHHHHHHHHhcCCChHH
Q 048766 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASGACSDLDV 456 (525)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 456 (525)
.+.+.++ ...-++..+...+.++ .++..+.+|+..|.+.+.+.+|...|+.. +..|+...|..+..++.+.|+..+
T Consensus 303 ~~l~~~d-~~~l~k~~e~~l~~h~--~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 303 PRLRPGD-PEPLIKAAEKWLKQHP--EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred hhcCCCC-chHHHHHHHHHHHhCC--CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 5666677 7777788777776433 34578899999999999999999999986 888999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 048766 457 ARISAAEVIKLE 468 (525)
Q Consensus 457 A~~~~~~~~~~~ 468 (525)
|.++.++.+.+-
T Consensus 380 A~~~r~e~L~~~ 391 (400)
T COG3071 380 AEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHHHHh
Confidence 999999998643
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=6.2e-12 Score=110.77 Aligned_cols=199 Identities=12% Similarity=0.063 Sum_probs=162.5
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHH
Q 048766 300 ASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376 (525)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 376 (525)
.....+..+...+...|++++|...+++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Confidence 345566777888888899999988888775 3345677888888999999999999999998843 33456677788
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCCh
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDL 454 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 454 (525)
..+...|+ +++|.+.++++............+..++..+...|++++|...+++. ...| +...+..+...+...|++
T Consensus 107 ~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGK-YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHccc-HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 88888998 99999999998764122234566778889999999999999999987 3333 456778888999999999
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 455 DVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 455 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
++|...++++++..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999998888899999999999999999999998887654
No 55
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.7e-09 Score=99.54 Aligned_cols=451 Identities=13% Similarity=0.070 Sum_probs=243.6
Q ss_pred HHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHH--HhcCChH
Q 048766 9 LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY--VQSGKYR 86 (525)
Q Consensus 9 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~ 86 (525)
=+.-+...|++++|.+....++..+ +-+...+.+-+-++.+.+++++|+.+.+.-........-.+=.+| .+.+..+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHH
Confidence 3445566677777777777777665 555666666666667777777777666544321111111122333 3567777
Q ss_pred HHHHHHHHHHhcCCCCC-HhhHHHHHHHHcccCChHHHHHHHHHHHHcccCC-CcchhhHHHHHHHhcCCHHHHHHHHhh
Q 048766 87 KALNLFVELERSEIYAD-AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER-GVVIANCLIDMYGKCGSVEDAIGVFGE 164 (525)
Q Consensus 87 ~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 164 (525)
+|+..++ |..++ ..+...-...|.+.|++++|..+|..+.+.+.+. +...-..++.+ +-.-.+. +.+.
T Consensus 97 ealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~q~ 166 (652)
T KOG2376|consen 97 EALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LLQS 166 (652)
T ss_pred HHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HHHh
Confidence 7777766 22222 2244444555667777777777777776654221 11111111111 1111111 2233
Q ss_pred ccCCChhhHHHH---HHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCc-ccHHHHHH
Q 048766 165 MIDKDIISWNSV---IAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS-SSWNSILT 240 (525)
Q Consensus 165 ~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~ 240 (525)
.......+|..+ ...+...|++.+|+++++...+- -...+ ..++.. -+.+ +... .+-..+..
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~-------~~e~l-~~~d~~-eEei-----e~el~~IrvQlay 232 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI-------CREKL-EDEDTN-EEEI-----EEELNPIRVQLAY 232 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-------HHHhh-cccccc-hhhH-----HHHHHHHHHHHHH
Confidence 322222233332 22344455555555555543000 00000 000000 0000 0000 11234555
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH---HhccccchHH--HH------------HHHHHHHHhCCCchHH
Q 048766 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS---GIAGLSALTW--GM------------LIHSCVIKQGLDASIV 303 (525)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~---~~~~~~~~~~--a~------------~~~~~~~~~~~~~~~~ 303 (525)
.+...|+.++|..++...+... ++|......... +...-.++.. .. .....+.... .-...
T Consensus 233 VlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~ 310 (652)
T KOG2376|consen 233 VLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIY 310 (652)
T ss_pred HHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHH
Confidence 6777899999999888888774 444433222221 2221111111 11 1111111110 11122
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhccCCC-HhHHHHHHHHHH--hcCChhHHHHHHHHHhhCCCCCCCH--hHHHHHHHH
Q 048766 304 VASALLDMYSKCGQVEIADSMFRSLCRKN-LVTWNAMITGYA--RNGDLTKVIELFEQLKTVRDLQPDS--VTFLNVLAA 378 (525)
Q Consensus 304 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~ 378 (525)
.-+.++.+| .+..+.+.++-..++... ...+.+++.... +...+..+.+++....+ -.|.. ......+..
T Consensus 311 ~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~---~~p~~s~~v~L~~aQl 385 (652)
T KOG2376|consen 311 RNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD---GHPEKSKVVLLLRAQL 385 (652)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc---cCCchhHHHHHHHHHH
Confidence 222333333 466677777777776433 334555544332 23357888888888777 35543 455566667
Q ss_pred HcCCCCCcchHHHHHH--------HhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-----CCCCc----hhHH
Q 048766 379 CSHTDIPFDKVSEYFE--------SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-----GFGSY----GVVW 441 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~----~~~~ 441 (525)
....|+ ++.|.+++. .+. .+...+.+...+...|.+.++.+.|..++.+. ...+. ...+
T Consensus 386 ~is~gn-~~~A~~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~ 461 (652)
T KOG2376|consen 386 KISQGN-PEVALEILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLM 461 (652)
T ss_pred HHhcCC-HHHHHHHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHH
Confidence 788898 999999998 443 33445667778888999999888888888765 11222 2234
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHH
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (525)
..++..-.+.|+-++|...++++++.+|++..+...+..+|.+. +.+.|..+-.
T Consensus 462 ~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 462 REAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 44444556789999999999999999999999999999999876 5667766544
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=5.9e-11 Score=100.79 Aligned_cols=269 Identities=13% Similarity=0.095 Sum_probs=138.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCc------chhhHHHHHHHhcCCH
Q 048766 82 SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV------VIANCLIDMYGKCGSV 155 (525)
Q Consensus 82 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~ 155 (525)
+++.++|+++|-+|.+.. +-+..+..+|.+.|.+.|..+.|..+...+.++ ||. .....|.+-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 346666666666666522 223334445555566666666666666666543 221 2233455556666666
Q ss_pred HHHHHHHhhccCCC---hhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCc
Q 048766 156 EDAIGVFGEMIDKD---IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232 (525)
Q Consensus 156 ~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 232 (525)
|.|+.+|..+.+.+ ..+...|+..|-...+|++|++.-+++...+...++.-|.-
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAq---------------------- 181 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQ---------------------- 181 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHH----------------------
Confidence 66666666665532 22344455555555555555555444422222222211111
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 048766 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312 (525)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (525)
.|--+...+....+.+.|..++++..+.+ +-....-..+.+.....|+++.|.+.++.+.+.+...-+.+...|..+|
T Consensus 182 -fyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 182 -FYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred -HHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 13334445555667777777777766652 1122222233445555666666666666666665555555556666666
Q ss_pred HcCCCHHHHHHHHHhcc--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcC
Q 048766 313 SKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381 (525)
Q Consensus 313 ~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (525)
.+.|+.++....+..+. .++...-..+...-....-.+.|...+.+-.. -+|+...+..++..-..
T Consensus 260 ~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 260 AQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhhc
Confidence 66666666666555554 23333333333333333344445444444444 35666666666655443
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=2.3e-11 Score=116.39 Aligned_cols=271 Identities=12% Similarity=0.021 Sum_probs=164.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCC-Cc-hHHHHHHHH
Q 048766 234 SWNSILTGYVNRNRVPEALHLFGEMQSK--DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL-DA-SIVVASALL 309 (525)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~ 309 (525)
.|..||..+......+.|..+.++.... .+..|..-+..+.+.+.+.+....+..++.++.+.-. .+ ...++-.++
T Consensus 493 ~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~l 572 (1088)
T KOG4318|consen 493 LYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLL 572 (1088)
T ss_pred HHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHH
Confidence 3678888888889999999999888654 3556777788889999999999999999988877432 22 234455566
Q ss_pred HHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHH-----------------HHHhhCCCCCCCHh--
Q 048766 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF-----------------EQLKTVRDLQPDSV-- 370 (525)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-----------------~~~~~~~~~~p~~~-- 370 (525)
+.....|+.+...++++-+..-+...-.-++....+.++...+.+.. -++...+ -.-+..
T Consensus 573 ns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke-~td~~qk~ 651 (1088)
T KOG4318|consen 573 NSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKE-TTDSPQKT 651 (1088)
T ss_pred hhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhh-ccccHHHH
Confidence 67777888888877777664221111011122222333333333333 3332221 111110
Q ss_pred -HHHHHHHHHcCCCCCcchHHHHHHHhh-----------hhhCCCC---------ChhHHHHHHHHHhccCChHHHHHHH
Q 048766 371 -TFLNVLAACSHTDIPFDKVSEYFESMT-----------KDYGIKP---------TVEHCCSMIRLMGQKGEVWRAQRMI 429 (525)
Q Consensus 371 -~~~~l~~~~~~~~~~~~~a~~~~~~~~-----------~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (525)
-+..-+..|.+.|. +..+.++.+--- ....+.| +......|+..|.+.|+++.|..+|
T Consensus 652 mDls~~iq~f~k~g~-~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glw 730 (1088)
T KOG4318|consen 652 MDLSIPIQKFEKLGS-CVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLW 730 (1088)
T ss_pred HhhcchhHHHHhccc-ccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHH
Confidence 01111122444454 444444432100 0000001 1112234777899999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHhc---CCChHHHHHHHHHHHhhcCCChh---HHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 430 RELGFGSYGVVWRALLSASGA---CSDLDVARISAAEVIKLEGDSDY---VYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 430 ~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.++...|.......++..+.+ .-|..++....+++.++.|..+. .|...+....+....+.|.+.+.+..+..+
T Consensus 731 nK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 731 NKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred hhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccC
Confidence 999877888777777666644 33788888888888887754443 355555666666777789999999888755
Q ss_pred ccC
Q 048766 504 RKE 506 (525)
Q Consensus 504 ~~~ 506 (525)
...
T Consensus 811 v~t 813 (1088)
T KOG4318|consen 811 VST 813 (1088)
T ss_pred CCc
Confidence 443
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.50 E-value=3.7e-09 Score=98.21 Aligned_cols=160 Identities=13% Similarity=0.040 Sum_probs=104.6
Q ss_pred HHHHHHHHhccCchhhhhHHHHHHHHh-CCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 048766 6 LFHLLRASSDLGWDTYCQQLHCYILKS-GFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84 (525)
Q Consensus 6 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~ 84 (525)
|...+.....+|++......|++.+.. .+.-....|...+....+.+-++.+++++++....++..-+-.|..++..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccc
Confidence 445556667778888888888876533 2333345677777777777888888888888887666677788888888888
Q ss_pred hHHHHHHHHHHHhcC------CCCCHhhHHHHHHHHcccCCh---HHHHHHHHHHHHcccCCC--cchhhHHHHHHHhcC
Q 048766 85 YRKALNLFVELERSE------IYADAYSFTSALAACGQLGSL---QLGMAIHSKIVKYSLERG--VVIANCLIDMYGKCG 153 (525)
Q Consensus 85 ~~~A~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 153 (525)
+++|.+.+....... .+.+...|.-+-...++..+. -....+++.+... -+| ...|+.|.+.|.+.|
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhh
Confidence 888888888775431 233444555544444433222 2233344443332 122 346788888888888
Q ss_pred CHHHHHHHHhhccC
Q 048766 154 SVEDAIGVFGEMID 167 (525)
Q Consensus 154 ~~~~a~~~~~~~~~ 167 (525)
+++.|..+|++...
T Consensus 263 ~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQ 276 (835)
T ss_pred hhHHHHHHHHHHHH
Confidence 88888888877654
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.49 E-value=8.9e-10 Score=104.49 Aligned_cols=366 Identities=14% Similarity=0.062 Sum_probs=247.0
Q ss_pred HcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCC---ChhhHHHHHHHHHhCCChHHHHHHHhcC--CC--C-Ccch
Q 048766 132 KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK---DIISWNSVIAASARNGNLELAFGFLHRL--PN--P-DTIS 203 (525)
Q Consensus 132 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~--~-~~~~ 203 (525)
...+.-+..+|..|.-+....|+++.+-+.|++...- ....|+.+...+...|....|..+++.. .. | +...
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3345567888888888899999999999999988653 4567999999999999999999999887 22 3 3333
Q ss_pred HHHHHHHHH-hcCChHHHHHHHhcCCC--------CCcccHHHHHHHHHhc-----------CChhHHHHHHHHHhhCC-
Q 048766 204 YNEVINGIA-QFGDIEDAIMILSSMPS--------PNSSSWNSILTGYVNR-----------NRVPEALHLFGEMQSKD- 262 (525)
Q Consensus 204 ~~~l~~~~~-~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~m~~~~- 262 (525)
+...-..|. +.+.++++.++-.++.. -....|..+.-+|... ....++++.+++..+.+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 443334443 45666666665554432 2333444444444321 22456778888877653
Q ss_pred CCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC---CC-------
Q 048766 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR---KN------- 332 (525)
Q Consensus 263 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~------- 332 (525)
-.|+..-| +.--++-.++++.|.+..++..+.+-..+...+..+.-.+.-.+++..|+.+.+.... .|
T Consensus 476 ~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 23333333 3334566788999999999998887677888888888888888999999888876641 11
Q ss_pred -------------HhHHHHHHHHHH-----------------------hcCChhHHHHHHHHHhh--------CC-----
Q 048766 333 -------------LVTWNAMITGYA-----------------------RNGDLTKVIELFEQLKT--------VR----- 363 (525)
Q Consensus 333 -------------~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~--------~~----- 363 (525)
..|...++..+- ..++..++.+....+.. .|
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 112222221111 01111222221111100 00
Q ss_pred ---CCCC--CH------hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHH
Q 048766 364 ---DLQP--DS------VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIRE 431 (525)
Q Consensus 364 ---~~~p--~~------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (525)
.+.| +. ..+......+.+.+. .++|..++.+..+ +.| .+..|...+..+...|.+++|.+.|..
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~-~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGN-DDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 0111 11 122234445566666 7888888888763 344 567777778888999999999999987
Q ss_pred h-CCCCc-hhHHHHHHHHHhcCCChHHHHH--HHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 432 L-GFGSY-GVVWRALLSASGACSDLDVARI--SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 432 ~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
. ..+|+ ..+..+++..+.+.|+..-|.. ++..+++.+|.++.+|..|+.++.+.|+.++|...|+-..+...
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 6 55666 5678889999999998888877 99999999999999999999999999999999999998877544
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.1e-10 Score=103.75 Aligned_cols=279 Identities=8% Similarity=-0.014 Sum_probs=210.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 048766 200 DTISYNEVINGIAQFGDIEDAIMILSSMPS---PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276 (525)
Q Consensus 200 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 276 (525)
+.........-+...+++.+..++++.+.+ ++...+..-|.++...|+..+-..+=.++.+. .|-.+.+|-++..-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 444555556667778888888888888775 44556666777888888888877777777765 35567788888888
Q ss_pred hccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHH
Q 048766 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVI 353 (525)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 353 (525)
|...|+.++|.+++.+....+ +.-...|-.+...|.-.|..|.|+..+.... +.....+--+.--|.+.++...|.
T Consensus 322 Yl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 888899999999998887665 2334567788888999999999988887664 222222333455678889999999
Q ss_pred HHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh-CCC----CChhHHHHHHHHHhccCChHHHHH
Q 048766 354 ELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDY-GIK----PTVEHCCSMIRLMGQKGEVWRAQR 427 (525)
Q Consensus 354 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~-~~~----~~~~~~~~l~~~~~~~g~~~~A~~ 427 (525)
+.|.+... +.|+ +...+-+.-.....+. +.+|..+|+.....- .+. -...+++.|+.+|.+.+.+++|+.
T Consensus 401 ~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~-y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 401 KFFKQALA---IAPSDPLVLHELGVVAYTYEE-YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHh---cCCCcchhhhhhhheeehHhh-hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999988 6774 5556555555566677 999999998876311 011 134568899999999999999999
Q ss_pred HHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh
Q 048766 428 MIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484 (525)
Q Consensus 428 ~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 484 (525)
.++.. -.+.+..++.+++-.|...|+++.|++.|.+++.+.|++..+-..|..+...
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99986 4455678888888899999999999999999999999887776666655443
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.1e-09 Score=96.39 Aligned_cols=275 Identities=10% Similarity=-0.032 Sum_probs=204.3
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCccc---HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 048766 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSS---WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273 (525)
Q Consensus 197 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 273 (525)
.+.+......+...+...|+.++|+..|++..-.|+.+ .......+.+.|+.+....+...+.... .-+...|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 44567778888888888899999988888776433332 2223344567788888877777766542 2233334444
Q ss_pred HHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChh
Q 048766 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLT 350 (525)
Q Consensus 274 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 350 (525)
........+++.|..+-++.++.+ +.+...+-.-..++...|+++.|.-.|+... +-+..+|..|+..|...|++.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 445556778888888888887766 4556666666778888999999999998876 347789999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCHhHHHHHH-HHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHH
Q 048766 351 KVIELFEQLKTVRDLQPDSVTFLNVL-AACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRM 428 (525)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 428 (525)
+|.-+-+...+. +..+..+...+. ..|.-....-++|.+++++.. .+.|+ ......+.+.+...|..++++.+
T Consensus 386 EA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 386 EANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 999888877662 334556655442 334333222588999998877 45675 45667788899999999999999
Q ss_pred HHHh-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHH
Q 048766 429 IREL-GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 429 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 478 (525)
++.. ...||......|+..+...+.+++|+..|..++.++|.+..+...|
T Consensus 461 Le~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 461 LEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 9986 6778888999999999999999999999999999999776555543
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=5.4e-12 Score=107.07 Aligned_cols=226 Identities=11% Similarity=0.043 Sum_probs=160.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 048766 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315 (525)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (525)
+.+.++|.+.|.+.+|.+.|+..+.. .|-+.||..|- ..|.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLs-----------------------------------kvY~ri 269 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLS-----------------------------------KVYQRI 269 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHH-----------------------------------HHHHHh
Confidence 45666777777777777777766654 33334444444 444455
Q ss_pred CCHHHHHHHHHhccC--C-CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHH
Q 048766 316 GQVEIADSMFRSLCR--K-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSE 391 (525)
Q Consensus 316 g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~ 391 (525)
.+++.|..++.+..+ | |+.....+.+.+-..++.++|.++|+...+ ..| +......+...|...++ ++-|+.
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk---~~~~nvEaiAcia~~yfY~~~-PE~Alr 345 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLK---LHPINVEAIACIAVGYFYDNN-PEMALR 345 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh---cCCccceeeeeeeeccccCCC-hHHHHH
Confidence 555555555544431 2 222333345556666777888888888777 344 45555666667777777 888888
Q ss_pred HHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh---CCCCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL---GFGSY--GVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
+|+++... |+ .++..|..+.-.|.-.++++-++.-|++. -..|+ ..+|..+.......||+..|.++|+-++.
T Consensus 346 yYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 346 YYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 88888765 43 45667777777777788888888887775 12233 57899999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 467 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
.+|++..++++|+..-.+.|++++|..+++......+.
T Consensus 424 ~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 424 SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 99999999999999999999999999999988765543
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=5.6e-10 Score=96.11 Aligned_cols=414 Identities=13% Similarity=0.056 Sum_probs=204.3
Q ss_pred HHHHHccCCHHHHHHHHhcCCC---CCcccHH-HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCCh
Q 048766 45 MGFYRKINSLADAHKMFVEIPQ---PSVVSWN-SLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120 (525)
Q Consensus 45 l~~~~~~~~~~~a~~~~~~~~~---~~~~~~~-~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 120 (525)
+.-+....++..|+.+++--.. ......+ .+...+.+.|++++|...+..+.+.. .|+...+..|..+..-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 3444556677777777654432 1111222 23344556677777777777666543 45555555555555556666
Q ss_pred HHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcC--CC
Q 048766 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL--PN 198 (525)
Q Consensus 121 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~ 198 (525)
.+|.++-... +.++-....|+..-.+.|+-++-..+-+.+.+ ...---++.......-++++|++++++. ..
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6666655432 22333334445555556665555444443322 2233334445555555677777777776 33
Q ss_pred CCcchHHH-HHHHHHhcCChHHHHHHHhcCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 048766 199 PDTISYNE-VINGIAQFGDIEDAIMILSSMPS--P-NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274 (525)
Q Consensus 199 ~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 274 (525)
|.....|. +.-+|.+..-++-+.+++.-..+ | ++...|..+....+.=+-..|.+-.+++.+.+-..-+.. .-++
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~-~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI-EYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH-HHHH
Confidence 43333333 23345555555555555443331 2 333344444333333333334444444444321110000 0000
Q ss_pred H-HhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHh-------------------
Q 048766 275 S-GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV------------------- 334 (525)
Q Consensus 275 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------------- 334 (525)
+ -+.--.+-+.|.+++--+.+. . +..-..|+-.|.+.+++.+|..+.+++.+..+.
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcH
Confidence 0 000001112222222111111 0 111122333344555555555555544332222
Q ss_pred ------------------------HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHH
Q 048766 335 ------------------------TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390 (525)
Q Consensus 335 ------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~ 390 (525)
--.++...+.-..++++++..+.....-- ..|...-..+..+.+..|. +.+|.
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF--~NdD~Fn~N~AQAk~atgn-y~eaE 413 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF--TNDDDFNLNLAQAKLATGN-YVEAE 413 (557)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhHHHHHHHHhcC-hHHHH
Confidence 22334444444445555555555555421 2222222245667777777 88888
Q ss_pred HHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhH-HHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV-WRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
++|-.+... .++.+..-...|.+.|.+.++++-|+.++-++..+.+..+ +..+..-|.+.+.+=-|-+.|+.+-.++|
T Consensus 414 elf~~is~~-~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 414 ELFIRISGP-EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHhhhcCh-hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 888777632 3333333345567788888888888888877754444333 34445677888888888888888877887
Q ss_pred CChhHH
Q 048766 470 DSDYVY 475 (525)
Q Consensus 470 ~~~~~~ 475 (525)
+|+.|
T Consensus 493 -~pEnW 497 (557)
T KOG3785|consen 493 -TPENW 497 (557)
T ss_pred -Ccccc
Confidence 45444
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=6.3e-11 Score=116.96 Aligned_cols=245 Identities=11% Similarity=0.027 Sum_probs=181.1
Q ss_pred ChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHhc---------cccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 048766 247 RVPEALHLFGEMQSKDVPMD-EYTFSTMLSGIA---------GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316 (525)
Q Consensus 247 ~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (525)
.+++|...|++..+. .|+ ...+..+..++. ..++.++|...++++.+.+ +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 467899999998875 444 445555544332 3355889999999999887 667788888888999999
Q ss_pred CHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHh-HHHHHHHHHcCCCCCcchHHHH
Q 048766 317 QVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV-TFLNVLAACSHTDIPFDKVSEY 392 (525)
Q Consensus 317 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~~a~~~ 392 (525)
++++|...|++.. +.+...+..+...+...|++++|+..+++..+ ..|+.. .+..++..+...|+ +++|.+.
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~-~eeA~~~ 428 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTG-IDDAIRL 428 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccC-HHHHHHH
Confidence 9999999999986 33456788889999999999999999999999 667543 33344555666788 9999999
Q ss_pred HHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchh-HHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 393 FESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGV-VWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 393 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
++++.+. ..| ++..+..+..+|...|++++|...++++ ...|+.. .+..+...+...| ++|...++++++..-
T Consensus 429 ~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 429 GDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 9998753 234 4556778889999999999999999987 4455543 4455556667777 478888888776442
Q ss_pred CChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
..+.....+..+|.-.|+.+.+... +++.+.+.
T Consensus 505 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 505 RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred HhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 2222222377778888888888777 77776644
No 65
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=8.6e-08 Score=89.41 Aligned_cols=471 Identities=13% Similarity=0.142 Sum_probs=277.5
Q ss_pred HHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC----------CCcccHHHH
Q 048766 6 LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ----------PSVVSWNSL 75 (525)
Q Consensus 6 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~l 75 (525)
|...+......|-++.+..++.+.++. ++..-+--+..+++.+++++|.+.+..+.. .+-..|..+
T Consensus 141 W~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~el 216 (835)
T KOG2047|consen 141 WDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLEL 216 (835)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHH
Confidence 444555555566677888888887765 344466778888999999999999887764 233456666
Q ss_pred HHHHHhcCChHH---HHHHHHHHHhcCCCCCH--hhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHH
Q 048766 76 ISGYVQSGKYRK---ALNLFVELERSEIYADA--YSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150 (525)
Q Consensus 76 l~~~~~~~~~~~---A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (525)
-...++..+.-. .-.+++.+.. .-+|. ..|..|..-|.+.|.+++|..++++.++.- .++.-++.+.+.|+
T Consensus 217 cdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHH
Confidence 665555443322 2334444332 23443 467888888899999999999998887652 33444444444444
Q ss_pred hcC----------------------CHHHHHHHHhhccCC---------------ChhhHHHHHHHHHhCCChHHHHHHH
Q 048766 151 KCG----------------------SVEDAIGVFGEMIDK---------------DIISWNSVIAASARNGNLELAFGFL 193 (525)
Q Consensus 151 ~~g----------------------~~~~a~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~ 193 (525)
.-. +++-.+.-|+.+... ++..|..-+. +..|+..+-...|
T Consensus 293 ~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~ty 370 (835)
T KOG2047|consen 293 QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTY 370 (835)
T ss_pred HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHH
Confidence 221 122223333333221 2223333222 2245566666666
Q ss_pred hcC---CCC------CcchHHHHHHHHHhcCChHHHHHHHhcCCCCCccc-------HHHHHHHHHhcCChhHHHHHHHH
Q 048766 194 HRL---PNP------DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSS-------WNSILTGYVNRNRVPEALHLFGE 257 (525)
Q Consensus 194 ~~~---~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~ 257 (525)
.+. .+| -...|..+...|-..|+++.|..+|++..+.+-.+ |-.....-.+..+++.|+++++.
T Consensus 371 teAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~ 450 (835)
T KOG2047|consen 371 TEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR 450 (835)
T ss_pred HHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 665 222 23467888889999999999999999988644444 44444444567788899998877
Q ss_pred HhhCCCC-----------C------CHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHH
Q 048766 258 MQSKDVP-----------M------DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320 (525)
Q Consensus 258 m~~~~~~-----------~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 320 (525)
....--+ + +...|...+..-...|-++....+|+.+.+..+.....+ ......+....-+++
T Consensus 451 A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii-~NyAmfLEeh~yfee 529 (835)
T KOG2047|consen 451 ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII-INYAMFLEEHKYFEE 529 (835)
T ss_pred hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhHHHHH
Confidence 6542111 1 123344455555567788888889999988775433333 233334556677888
Q ss_pred HHHHHHhcc----CCCHh-HHHHHHHHHHh---cCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHH--HcCCCCCcchHH
Q 048766 321 ADSMFRSLC----RKNLV-TWNAMITGYAR---NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA--CSHTDIPFDKVS 390 (525)
Q Consensus 321 A~~~~~~~~----~~~~~-~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~~a~ 390 (525)
+.+++++-. .|++. .|+..+.-+.+ ....+.|..+|++..+ | .+|...-+..++.+ --.-|. ...|+
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~-Cpp~~aKtiyLlYA~lEEe~GL-ar~am 606 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G-CPPEHAKTIYLLYAKLEEEHGL-ARHAM 606 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHHHHHhhH-HHHHH
Confidence 999998875 34443 67776655543 3468999999999998 5 56653322222222 223466 77888
Q ss_pred HHHHHhhhhhCCCCC--hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchh---HHHHHHHHHhcCCChHHHHHHHHHH
Q 048766 391 EYFESMTKDYGIKPT--VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGV---VWRALLSASGACSDLDVARISAAEV 464 (525)
Q Consensus 391 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~ 464 (525)
.+++++.. ++++. ...|+..|.--...=-+.....++++. ..-|+.. ....+...-.+.|..+.|..+|...
T Consensus 607 siyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 607 SIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 88888754 55543 344555443222111122223333332 1123322 2233444455678888888888777
Q ss_pred Hhhc-CC-ChhHHHHHHHHHhhccChhHHH
Q 048766 465 IKLE-GD-SDYVYVMLCNLYTSHGNWDVAS 492 (525)
Q Consensus 465 ~~~~-p~-~~~~~~~l~~~~~~~g~~~~A~ 492 (525)
-+.- |. +...|...=..-.+.|+-+.-.
T Consensus 685 sq~~dPr~~~~fW~twk~FEvrHGnedT~k 714 (835)
T KOG2047|consen 685 SQICDPRVTTEFWDTWKEFEVRHGNEDTYK 714 (835)
T ss_pred hhcCCCcCChHHHHHHHHHHHhcCCHHHHH
Confidence 7654 42 3445666666667777744433
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.41 E-value=2.6e-11 Score=98.18 Aligned_cols=162 Identities=14% Similarity=0.111 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSM 412 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 412 (525)
+...|.-.|...|+...|.+-+++..+ ..|+ ..++..+...|.+.|. .+.|.+.|+... .+.| +-.+.|..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~---~DPs~~~a~~~~A~~Yq~~Ge-~~~A~e~YrkAl---sl~p~~GdVLNNY 109 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE---HDPSYYLAHLVRAHYYQKLGE-NDLADESYRKAL---SLAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCC-hhhHHHHHHHHH---hcCCCccchhhhh
Confidence 344566778888888888888888888 5564 5677777888888888 888888888877 3455 46677888
Q ss_pred HHHHhccCChHHHHHHHHHhCCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccCh
Q 048766 413 IRLMGQKGEVWRAQRMIRELGFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW 488 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 488 (525)
+..+|..|++++|...|++.-..|. ..+|..++....+.|+++.|...|++.++.+|+.+.+...++..+...|++
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 8888888888888888888622333 456777777778888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHcCC
Q 048766 489 DVASVMRNFMRERGL 503 (525)
Q Consensus 489 ~~A~~~~~~~~~~~~ 503 (525)
.+|..++++....+.
T Consensus 190 ~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 190 APARLYLERYQQRGG 204 (250)
T ss_pred hHHHHHHHHHHhccc
Confidence 888888888877766
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.39 E-value=9.4e-11 Score=105.87 Aligned_cols=229 Identities=9% Similarity=-0.094 Sum_probs=124.5
Q ss_pred hcCChhHHHHHHHHHhhCC-CCCC--HHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHH
Q 048766 244 NRNRVPEALHLFGEMQSKD-VPMD--EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320 (525)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 320 (525)
..+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|....+.. +.+...+..+...+...|+++.
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3455566777776666532 1222 2345555556667777777777777776665 4456667777777777777777
Q ss_pred HHHHHHhccC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhh
Q 048766 321 ADSMFRSLCR---KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397 (525)
Q Consensus 321 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 397 (525)
|.+.|+...+ .+..+|..+...+...|++++|++.+++..+ ..|+..........+...++ .++|.+.+++..
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~-~~~A~~~l~~~~ 192 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLD-PKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCC-HHHHHHHHHHHH
Confidence 7777776642 2345666666667777777777777777766 44543321111222233444 677777775544
Q ss_pred hhhCCCCChhHHHHHHHHHhccCChHHH--HHHHHHh-CCCC-----chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 398 KDYGIKPTVEHCCSMIRLMGQKGEVWRA--QRMIREL-GFGS-----YGVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 398 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~-~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
. ..+|+...+ .+ .+...|+..++ .+.+.+. ...+ ....|..++..+.+.|++++|+..|+++++.+|
T Consensus 193 ~--~~~~~~~~~-~~--~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 E--KLDKEQWGW-NI--VEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred h--hCCccccHH-HH--HHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2 223322211 22 22223443332 2222211 1111 134566667777777777777777777777775
Q ss_pred -CChhHHHHHHHHH
Q 048766 470 -DSDYVYVMLCNLY 482 (525)
Q Consensus 470 -~~~~~~~~l~~~~ 482 (525)
+.......++...
T Consensus 268 ~~~~e~~~~~~e~~ 281 (296)
T PRK11189 268 YNFVEHRYALLELA 281 (296)
T ss_pred chHHHHHHHHHHHH
Confidence 3333333344333
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.38 E-value=1.6e-10 Score=108.73 Aligned_cols=231 Identities=15% Similarity=0.198 Sum_probs=155.3
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHHh-----C-CCchHH-HHHHHHHHHHcCCCHHHHHHHHHhcc--------CCC-
Q 048766 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQ-----G-LDASIV-VASALLDMYSKCGQVEIADSMFRSLC--------RKN- 332 (525)
Q Consensus 269 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~- 332 (525)
+...+...|...|+++.|...++...+. | ..|... ..+.+...|...+++++|..+|+++. +.+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555555555555555555555443 1 112222 22335566677777777777666663 111
Q ss_pred --HhHHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCCH-hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhC--C
Q 048766 333 --LVTWNAMITGYARNGDLTKVIELFEQLKT-----VRDLQPDS-VTFLNVLAACSHTDIPFDKVSEYFESMTKDYG--I 402 (525)
Q Consensus 333 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~p~~-~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~--~ 402 (525)
..+++.|..+|.+.|++++|...+++..+ .|...|.. ..++.+...|...++ +++|..+++...+.+. +
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~-~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE-YEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhhc
Confidence 23566677777777777777666665433 12122332 345566667778888 9999998887765433 2
Q ss_pred CC----ChhHHHHHHHHHhccCChHHHHHHHHHh---------CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhh-
Q 048766 403 KP----TVEHCCSMIRLMGQKGEVWRAQRMIREL---------GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKL- 467 (525)
Q Consensus 403 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 467 (525)
.+ -..++..|...|...|++.+|.++++++ +..+. ...++.+...|.+.+++.+|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2467899999999999999999999986 11222 456788999999999999999999988764
Q ss_pred ---cCCC---hhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 468 ---EGDS---DYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 468 ---~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
+|++ ..+|..|+.+|.+.|++++|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4554 45688999999999999999999988763
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.4e-08 Score=89.43 Aligned_cols=283 Identities=6% Similarity=-0.090 Sum_probs=207.0
Q ss_pred HhcCChHHHHHHHhcCC-----CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH-HHHHHHHHhccccchHH
Q 048766 212 AQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY-TFSTMLSGIAGLSALTW 285 (525)
Q Consensus 212 ~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 285 (525)
+..++...|...+-.+. +.|+.....+..++...|+.++|...|++.+-. .|+.. ......-.+...|+.+.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhh
Confidence 33455444444433222 467888899999999999999999999988754 34322 12222223456677777
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 048766 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK---NLVTWNAMITGYARNGDLTKVIELFEQLKTV 362 (525)
Q Consensus 286 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 362 (525)
...+...+.... ..+...+..-+......++++.|..+-++.++. ++..+-.-...+...+++++|.--|+....
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~- 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM- 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh-
Confidence 777766665443 122222222333445678899999998888744 444555556788899999999999999988
Q ss_pred CCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHH-HHHh-ccCChHHHHHHHHHh-CCCCc-
Q 048766 363 RDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMI-RLMG-QKGEVWRAQRMIREL-GFGSY- 437 (525)
Q Consensus 363 ~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~~~- 437 (525)
+.| +..+|..++..|...|. +.+|.-.-+...+ -+..+..+...++ ..+. ...--++|.+++++. ...|+
T Consensus 363 --Lap~rL~~Y~GL~hsYLA~~~-~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y 437 (564)
T KOG1174|consen 363 --LAPYRLEIYRGLFHSYLAQKR-FKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY 437 (564)
T ss_pred --cchhhHHHHHHHHHHHHhhch-HHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence 666 68999999999999999 9999988887775 3445566655543 2222 233457899999885 77787
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 438 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
......+...|...|.++.++.++++.+...| |......|++.+...+.+.+|...|......++.
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 45677788889999999999999999999999 7888999999999999999999999988776554
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=3.5e-10 Score=99.57 Aligned_cols=163 Identities=18% Similarity=0.132 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHH
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 379 (525)
..+..+...+...|++++|.+.+++.. +.+...+..+...+...|++++|.+.+++.............+..+...+
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 344444455555555555555555443 22334455555556666666666666666655321111233444555566
Q ss_pred cCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHH
Q 048766 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVA 457 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A 457 (525)
...|+ +++|.+.+++..+. .+.+...+..++..+...|++++|...+++. .. +.+...+..+...+...|+.++|
T Consensus 146 ~~~g~-~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 146 LKAGD-FDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred HHcCC-HHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence 66666 67777776666542 1223455666666677777777777776665 21 22344445555666667777777
Q ss_pred HHHHHHHHhhc
Q 048766 458 RISAAEVIKLE 468 (525)
Q Consensus 458 ~~~~~~~~~~~ 468 (525)
..+.+.+.+..
T Consensus 223 ~~~~~~~~~~~ 233 (234)
T TIGR02521 223 QRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHhhC
Confidence 77766665543
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=3e-10 Score=112.22 Aligned_cols=211 Identities=14% Similarity=0.011 Sum_probs=166.3
Q ss_pred cchHHHHHHHHHHHHhCCCchHHHHHHHHHHHH---------cCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCC
Q 048766 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYS---------KCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGD 348 (525)
Q Consensus 281 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 348 (525)
++.++|...+++..+.. +.+...+..+..++. ..+++++|...+++.. +.+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45788999999998876 445556666665544 2345889999999887 3466788888889999999
Q ss_pred hhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCCh-hHHHHHHHHHhccCChHHHH
Q 048766 349 LTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV-EHCCSMIRLMGQKGEVWRAQ 426 (525)
Q Consensus 349 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 426 (525)
+++|+..|+++.+ ..|+ ...+..+...+...|+ +++|...++++.+ +.|+. ..+..++..+...|++++|+
T Consensus 354 ~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~G~-~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 354 YIVGSLLFKQANL---LSPISADIKYYYGWNLFMAGQ-LEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHH
Confidence 9999999999999 6675 5677788888999999 9999999999984 46653 23344555677789999999
Q ss_pred HHHHHh--CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 427 RMIREL--GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 427 ~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
..++++ ...|+ +..+..+...+...|++++|...++++....|++......++..|...|+ +|...++.+.+.
T Consensus 427 ~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 427 RLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 999987 22354 44567778888899999999999999988888888888888889888884 888888877653
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=2e-08 Score=86.77 Aligned_cols=381 Identities=12% Similarity=0.097 Sum_probs=188.8
Q ss_pred HHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHH---------------
Q 048766 11 RASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSL--------------- 75 (525)
Q Consensus 11 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l--------------- 75 (525)
.++-+.|++++|...+..+.+.. .++....-.|...+--.|.+.+|..+....++ ....+.+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k--~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK--TPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHH
Confidence 44557888888888888887765 44444444444444455778888777766654 1111111
Q ss_pred ----------------HHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHH-HHcccCChHHHHHHHHHHHHcccCCC
Q 048766 76 ----------------ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALA-ACGQLGSLQLGMAIHSKIVKYSLERG 138 (525)
Q Consensus 76 ----------------l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~ 138 (525)
.+.....-.+++|++++.+....+ |+-...+.-+. +|.+..-++-+.++++...+. ++.+
T Consensus 142 ~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdS 218 (557)
T KOG3785|consen 142 TFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDS 218 (557)
T ss_pred HHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCc
Confidence 111112224555666666555432 33333333332 234445555555555554443 2233
Q ss_pred cchhhHHHHHHHhc--CCHHHHHHHHhhccCCChhhHHHHHHHHHhC-----CChHHHHHHHhcCCCCCcchHHHHHHHH
Q 048766 139 VVIANCLIDMYGKC--GSVEDAIGVFGEMIDKDIISWNSVIAASARN-----GNLELAFGFLHRLPNPDTISYNEVINGI 211 (525)
Q Consensus 139 ~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 211 (525)
....|.......+. |+..+ .-..++.+.....| ..+.-+++. ..-+.|++++-.+.+.-++.-..++-.|
T Consensus 219 tiA~NLkacn~fRl~ngr~ae--~E~k~ladN~~~~~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYy 295 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLINGRTAE--DEKKELADNIDQEY-PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYY 295 (557)
T ss_pred HHHHHHHHHHHhhhhccchhH--HHHHHHHhcccccc-hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeee
Confidence 33333333322222 22211 11111111100001 111112221 1234455544444333344445566667
Q ss_pred HhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcC-------ChhHHHHHHHHHhhCCCCCCH-HHHHHHHHHhccccch
Q 048766 212 AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN-------RVPEALHLFGEMQSKDVPMDE-YTFSTMLSGIAGLSAL 283 (525)
Q Consensus 212 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~ 283 (525)
.+.+++++|..+.+.+...++.-|-.-.-.++..| +..-|.+.|+-.-.++..-|. ..-..+...+.-..++
T Consensus 296 L~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF 375 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF 375 (557)
T ss_pred cccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence 77788888887777775433333322222233333 234455555444333322221 2233344445555667
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCC---CHhHHHH-HHHHHHhcCChhHHHHHHHHH
Q 048766 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK---NLVTWNA-MITGYARNGDLTKVIELFEQL 359 (525)
Q Consensus 284 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~-l~~~~~~~~~~~~a~~~~~~~ 359 (525)
+.+..++..+...-...|...++ +..+++..|++.+|+++|-.+..+ |..+|.+ |.+.|.+.+.++.|.+++-++
T Consensus 376 ddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 376 DDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 77777766666655444444443 566777777777777777777643 3344543 446677777777776665544
Q ss_pred hhCCCCCCCHhHHH-HHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHH
Q 048766 360 KTVRDLQPDSVTFL-NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409 (525)
Q Consensus 360 ~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 409 (525)
.. +.+..+.. .+...|.+.+. +--|-+.|+.+. ..+|++..|
T Consensus 455 ~t----~~e~fsLLqlIAn~CYk~~e-FyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 455 NT----PSERFSLLQLIANDCYKANE-FYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred CC----chhHHHHHHHHHHHHHHHHH-HHHHHHhhhHHH---ccCCCcccc
Confidence 22 12233322 33445666666 666667776665 446766665
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.32 E-value=1.8e-09 Score=97.60 Aligned_cols=213 Identities=13% Similarity=0.111 Sum_probs=155.5
Q ss_pred cchHHHHHHHHHHHHhC-CCc--hHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHH
Q 048766 281 SALTWGMLIHSCVIKQG-LDA--SIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIE 354 (525)
Q Consensus 281 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 354 (525)
+..+.+..-+.+++... ..| ....+..+...|...|+.+.|...|++.. +.+...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45666677776776532 122 24567778888999999999999999886 3467789999999999999999999
Q ss_pred HHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-
Q 048766 355 LFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL- 432 (525)
Q Consensus 355 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 432 (525)
.|++..+ +.|+ ...+..+...+...|+ +++|.+.++...+. .|+..........+...+++++|...+++.
T Consensus 120 ~~~~Al~---l~P~~~~a~~~lg~~l~~~g~-~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLE---LDPTYNYAYLNRGIALYYGGR-YELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999998 6775 5677778888888998 99999999999854 554332222233445678899999999765
Q ss_pred -CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHH-------hhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 433 -GFGSYGVVWRALLSASGACSDLDVARISAAEVI-------KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 433 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
...|+...+ .......|+...+ +.++.+. ++.|..+.+|..++.++...|++++|+..|++..+.++.
T Consensus 193 ~~~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 193 EKLDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred hhCCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 223333222 2222334554333 2333333 556777889999999999999999999999999987753
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=3.4e-08 Score=91.23 Aligned_cols=413 Identities=14% Similarity=0.038 Sum_probs=238.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHH
Q 048766 77 SGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156 (525)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (525)
.-+...|++++|.+...++...+ +-+...+..-+.+..+.+.+++|..+.+.-.. ...+.+.+-.-.-+..+.+..+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHH
Confidence 34456778888888888888754 44566777777888888888888754442111 0111111111122334678889
Q ss_pred HHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHH-HHhcCChHHHHHHHhcCCCCCcccH
Q 048766 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVING-IAQFGDIEDAIMILSSMPSPNSSSW 235 (525)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 235 (525)
+|...++.....+..+...-...+.+.|++++|+++|+.+...+...+..-+.+ +...+..-.+. +.+........+|
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSY 175 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchH
Confidence 998888866555666777777888889999999999988844333333322221 11111111121 3444443233344
Q ss_pred HH---HHHHHHhcCChhHHHHHHHHHhhC-------CCCCCH-------HHHHHHHHHhccccchHHHHHHHHHHHHhCC
Q 048766 236 NS---ILTGYVNRNRVPEALHLFGEMQSK-------DVPMDE-------YTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298 (525)
Q Consensus 236 ~~---l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 298 (525)
.. ....++..|++.+|+++++...+. +-.-+. ..-..+.-++...|+.++|..+|...++...
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 33 344567889999999999888321 111111 1122344456688999999999999998873
Q ss_pred CchHH---HHHHHHHHHHcCCCH-H-HHHHHHHhccCCCH--------------hHHH-HHHHHHHhcCChhHHHHHHHH
Q 048766 299 DASIV---VASALLDMYSKCGQV-E-IADSMFRSLCRKNL--------------VTWN-AMITGYARNGDLTKVIELFEQ 358 (525)
Q Consensus 299 ~~~~~---~~~~l~~~~~~~g~~-~-~A~~~~~~~~~~~~--------------~~~~-~l~~~~~~~~~~~~a~~~~~~ 358 (525)
...+. ..|.|+. ...-.++ + .+...++....... ...| .++..| .+.-+.+.++...
T Consensus 256 ~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~ 332 (652)
T KOG2376|consen 256 ADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSAS 332 (652)
T ss_pred CCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHh
Confidence 32221 1222222 2211111 1 22333333321111 1112 222222 2333444444444
Q ss_pred HhhCCCCCCCHhHHHHHHHHHcC--CCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHH-----
Q 048766 359 LKTVRDLQPDSVTFLNVLAACSH--TDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIR----- 430 (525)
Q Consensus 359 ~~~~~~~~p~~~~~~~l~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~----- 430 (525)
... ..|... +..++..+.+ ... +.++.+++....+. .+-. ..+...++......|+++.|++++.
T Consensus 333 lp~---~~p~~~-~~~ll~~~t~~~~~~-~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 333 LPG---MSPESL-FPILLQEATKVREKK-HKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred CCc---cCchHH-HHHHHHHHHHHHHHH-HhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 332 344433 3344443322 223 67788888777653 2222 4455667778889999999999998
Q ss_pred ---Hh-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc-------CCChhHHHHHHHHHhhccChhHHHHHHHHHH
Q 048766 431 ---EL-GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE-------GDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 431 ---~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
.+ ...-.+.+...+...+.+.++.+.|..++.+++.-- +.-...+..++..-.+.|+-++|..+++++.
T Consensus 406 ~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 406 WKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 33 223334555666777788888888888888887621 2233445566777778899999999999998
Q ss_pred HcCC
Q 048766 500 ERGL 503 (525)
Q Consensus 500 ~~~~ 503 (525)
+.+.
T Consensus 486 k~n~ 489 (652)
T KOG2376|consen 486 KFNP 489 (652)
T ss_pred HhCC
Confidence 8543
No 75
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=5.4e-12 Score=79.51 Aligned_cols=50 Identities=38% Similarity=0.775 Sum_probs=44.9
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcc
Q 048766 67 PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116 (525)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 116 (525)
||+.+||.+|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999988864
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=2e-08 Score=95.53 Aligned_cols=132 Identities=12% Similarity=0.155 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSM 412 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 412 (525)
.|......+.+.++.++|...+.+..+ +.| ....|......+...|. +++|.+.|.... -++|+ +....++
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~-~~EA~~af~~Al---~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQ-LEEAKEAFLVAL---ALDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHh-hHHHHHHHHHHH---hcCCCCcHHHHHH
Confidence 466667788889999999988888887 556 45666666667777888 999999998887 56774 7788899
Q ss_pred HHHHhccCChHHHHH--HHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChh
Q 048766 413 IRLMGQKGEVWRAQR--MIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY 473 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~--~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 473 (525)
+.++.+.|+..-|.. ++..+ ...| ++..|..++..+.+.|+.+.|.++|.-++++++.+|.
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999998877777 88876 4455 4789999999999999999999999999999976653
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.29 E-value=8.8e-08 Score=89.54 Aligned_cols=107 Identities=12% Similarity=0.080 Sum_probs=82.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
++..++..|-+.|+++.|...++.. +..|+ ...|..-.+.+...|+.++|...++++.+++-.|...-...+.-..++
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 3456677888999999999999987 65666 345555567788899999999999999999854666666788888999
Q ss_pred cChhHHHHHHHHHHHcCCc-----cCCcccEEEe
Q 048766 486 GNWDVASVMRNFMRERGLR-----KEAGCSWIEV 514 (525)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~ 514 (525)
++.++|.++..+....|.. .+-.|+|.++
T Consensus 453 n~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred cccHHHHHHHHHhhhcccchhhhHHHhhhHHHhH
Confidence 9999999999988887753 2234556554
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.29 E-value=2.7e-08 Score=95.08 Aligned_cols=429 Identities=11% Similarity=0.072 Sum_probs=234.6
Q ss_pred HHHHHccCCHHHHHHHHhcCCC--CCcc-cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHc-c----
Q 048766 45 MGFYRKINSLADAHKMFVEIPQ--PSVV-SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACG-Q---- 116 (525)
Q Consensus 45 l~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~---- 116 (525)
...+...|++++|++.++.... .|.. ........+.+.|+.++|..++..+.+.+ |+...|...+..+. -
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 4456677888888888877655 4443 44556667788888888888888888865 55555544444443 1
Q ss_pred -cCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHH-HHHHHHhhccCCChhh-HHHHHHHHHhCCChHHHHHHH
Q 048766 117 -LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE-DAIGVFGEMIDKDIIS-WNSVIAASARNGNLELAFGFL 193 (525)
Q Consensus 117 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~ 193 (525)
..+.+...++++++...- |.......+.-.+..-..+. .+...+..+..+++.+ ++.+-..|....+.+-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 124666777777776653 33333322222222212222 3344444455555543 333333333222222222222
Q ss_pred hcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC-CCCcc--cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HHH
Q 048766 194 HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP-SPNSS--SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD-EYT 269 (525)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~ 269 (525)
... .......+.+.... ..-. .|+.. ++..+...|...|++++|++++++.++. .|+ +..
T Consensus 167 ~~~-----------~~~l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~el 230 (517)
T PF12569_consen 167 EEY-----------VNSLESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVEL 230 (517)
T ss_pred HHH-----------HHhhcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHH
Confidence 221 00000000000000 0001 13332 3455677788888999999998888876 444 567
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHh----------HH--H
Q 048766 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV----------TW--N 337 (525)
Q Consensus 270 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~--~ 337 (525)
|..-.+.+-+.|++.+|...++...+.+ ..|..+-+..+..+.+.|+.++|.+++....+++.. .| .
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 7777888888899999988888888876 557777777788888889999998888877654311 22 3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCC----CCCC----------HhHHHHHHHHHcCCCCC------cchHHHHHHHhh
Q 048766 338 AMITGYARNGDLTKVIELFEQLKTVRD----LQPD----------SVTFLNVLAACSHTDIP------FDKVSEYFESMT 397 (525)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~p~----------~~~~~~l~~~~~~~~~~------~~~a~~~~~~~~ 397 (525)
.-..+|.+.|++..|++-|..+.+.-. -.-| ..+|..++...-+.... ...|++++-.+.
T Consensus 310 e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~ 389 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELH 389 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Confidence 346778888888888776665544210 1112 23333333322111110 223444444443
Q ss_pred hhhCCCC-----------ChhHHHHHHHHH---hccCChHHHHHHHHH-----------h----CCCCchhHHHHHHHHH
Q 048766 398 KDYGIKP-----------TVEHCCSMIRLM---GQKGEVWRAQRMIRE-----------L----GFGSYGVVWRALLSAS 448 (525)
Q Consensus 398 ~~~~~~~-----------~~~~~~~l~~~~---~~~g~~~~A~~~~~~-----------~----~~~~~~~~~~~l~~~~ 448 (525)
....... +..--..+..-. .+...-+++...-.+ . +...|. ..++.-+
T Consensus 390 d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~---Dp~GekL 466 (517)
T PF12569_consen 390 DKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDD---DPLGEKL 466 (517)
T ss_pred cCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCC---CccHHHH
Confidence 3200000 000001111100 011111111111100 0 111111 1122333
Q ss_pred hcCC-ChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHH
Q 048766 449 GACS-DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 449 ~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (525)
.+.. =.++|.++++-+.+..|++..+|.....+|.+.|++--|++.+.+
T Consensus 467 ~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 467 LKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred hcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 3444 478899999999999999999999999999999999999887754
No 79
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.9e-08 Score=84.84 Aligned_cols=409 Identities=11% Similarity=0.035 Sum_probs=257.5
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhH-HHHHH
Q 048766 71 SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC-LIDMY 149 (525)
Q Consensus 71 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 149 (525)
-+++++..+.+..++..|++++....++. +.+....+.|..+|....++..|...++++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 36778888888899999999998888764 236777888888888999999999999988764 354444432 24556
Q ss_pred HhcCCHHHHHHHHhhccCCC-hhh--HHHHHHHHHhCCChHHHHHHHhcCC-CCCcchHHHHHHHHHhcCChHHHHHHHh
Q 048766 150 GKCGSVEDAIGVFGEMIDKD-IIS--WNSVIAASARNGNLELAFGFLHRLP-NPDTISYNEVINGIAQFGDIEDAIMILS 225 (525)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~-~~~--~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 225 (525)
.+.+.+.+|+++...|.+.+ ... ...-.......+++..+..++++.+ +.+..+.+.......+.|+++.|.+-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 67888999999998887642 221 1222234556888888888888886 4666677777777778889999988888
Q ss_pred cCCC----CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH----HHHHHHhccccchHHHHHHHHHHHHhC
Q 048766 226 SMPS----PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF----STMLSGIAGLSALTWGMLIHSCVIKQG 297 (525)
Q Consensus 226 ~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~ 297 (525)
...+ .....|+. .-++.+.|+++.|+++..++++.|++-.+..- .-.+.+ ...|+.. .|..
T Consensus 169 aAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt~-------~lh~-- 237 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNTL-------VLHQ-- 237 (459)
T ss_pred HHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccchH-------HHHH--
Confidence 7764 23334554 34556678888999999888888765322100 000000 0001000 0000
Q ss_pred CCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC-----CCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhH
Q 048766 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCR-----KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVT 371 (525)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~ 371 (525)
..-...++.-...+.+.|+++.|.+.+-.|++ .|++|...+.-.= ..+++.+..+-++-+.+ +.| ...|
T Consensus 238 -Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~---~nPfP~ET 312 (459)
T KOG4340|consen 238 -SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ---QNPFPPET 312 (459)
T ss_pred -HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh---cCCCChHH
Confidence 11123444455567789999999999999984 3677776654322 24556666666666666 344 4678
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHH-hccCChHHHHHHHHHhCCCCchhHHHHHHHHH-h
Q 048766 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLM-GQKGEVWRAQRMIRELGFGSYGVVWRALLSAS-G 449 (525)
Q Consensus 372 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~ 449 (525)
|..++-.||+..- ++.|-.++.+-....-.-.++..|+ |++++ .-.-..++|.+-++.+...-....-...+... .
T Consensus 313 FANlLllyCKNey-f~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~ 390 (459)
T KOG4340|consen 313 FANLLLLYCKNEY-FDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEA 390 (459)
T ss_pred HHHHHHHHhhhHH-HhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 9999888754332100011334444 34444 34557777777776651111111111111111 1
Q ss_pred cCCC----hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 450 ACSD----LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 450 ~~~~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+..+ ...|++-+++.+++. -.+....++.|++..++.-+.++|..-.+-.-
T Consensus 391 r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 391 RHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 2222 233445556666654 12566778999999999999999987766544
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=5.6e-09 Score=84.94 Aligned_cols=188 Identities=15% Similarity=0.094 Sum_probs=78.5
Q ss_pred hccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHH
Q 048766 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVI 353 (525)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 353 (525)
|...|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++.. +.+..+.|.....+|..|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 333334444443333333333 3333344444444444444444444444443 223334444444444444444444
Q ss_pred HHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 354 ELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
..|++........--..+|..+..+..+.|+ .+.|.+.|++..+. .| .+.....+.+...+.|++..|...++..
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq-~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQ-FDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-chhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 4444444432111113344444444444444 44444444444421 22 2333344444444444444444444443
Q ss_pred --CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 433 --GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 433 --~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
...+...++...+..-...||.+.+.+.=.++.+..|
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 2223333333333333444444444444444444444
No 81
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.5e-11 Score=77.47 Aligned_cols=50 Identities=30% Similarity=0.746 Sum_probs=46.8
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcc
Q 048766 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279 (525)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 279 (525)
||+.+||.+|.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999874
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.25 E-value=1.5e-07 Score=89.17 Aligned_cols=331 Identities=14% Similarity=0.108 Sum_probs=166.9
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhc--cCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcch--------H--------
Q 048766 143 NCLIDMYGKCGSVEDAIGVFGEM--IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS--------Y-------- 204 (525)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~-------- 204 (525)
.+-|..|.+.|....|.+....- ...|......+..++.+..-+++|-++|+++.+++... |
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielar 698 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR 698 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH
Confidence 34567777888777766554221 22344444555555555555555555555553332110 0
Q ss_pred -----------HHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 048766 205 -----------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273 (525)
Q Consensus 205 -----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 273 (525)
.....-+...|+++.|...|-+. ...---+.+.....+|.+|+.+++.+++... -..-|..+
T Consensus 699 fafp~evv~lee~wg~hl~~~~q~daainhfiea-----~~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~i 771 (1636)
T KOG3616|consen 699 FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA-----NCLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEI 771 (1636)
T ss_pred hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh-----hhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHH
Confidence 00111112223333333333221 0111223445566777777777777766532 23345666
Q ss_pred HHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCH--hHHHHHHHHHHhcCChhH
Q 048766 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL--VTWNAMITGYARNGDLTK 351 (525)
Q Consensus 274 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 351 (525)
...|+..|+++.|.++|.+.- .++..+.+|.+.|+|+.|.++-.+...|.. ..|-+-..-+-.+|++.+
T Consensus 772 adhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~e 842 (1636)
T KOG3616|consen 772 ADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAE 842 (1636)
T ss_pred HHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhh
Confidence 677777777777777765331 234456677777777777777666654432 233333333333444333
Q ss_pred HHHHH-------------HHHhhC-------CCCCCC--HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHH
Q 048766 352 VIELF-------------EQLKTV-------RDLQPD--SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409 (525)
Q Consensus 352 a~~~~-------------~~~~~~-------~~~~p~--~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 409 (525)
|.++| ++.... +...|+ ..|-..+..-+-..|+ ++.|...|-+... |
T Consensus 843 aeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~-lkaae~~flea~d----------~ 911 (1636)
T KOG3616|consen 843 AEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGD-LKAAEEHFLEAGD----------F 911 (1636)
T ss_pred hhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccC-hhHHHHHHHhhhh----------H
Confidence 33332 211000 001222 2344455556666676 7777766655432 4
Q ss_pred HHHHHHHhccCChHHHHHHHHHhC-CCCch-h--HHH------HHHHHHhcCC-------------ChHHHHHHHHHHHh
Q 048766 410 CSMIRLMGQKGEVWRAQRMIRELG-FGSYG-V--VWR------ALLSASGACS-------------DLDVARISAAEVIK 466 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~--~~~------~l~~~~~~~~-------------~~~~A~~~~~~~~~ 466 (525)
..-+.+|...+.+++|-++-+.-+ .+... . .|. ..+..+.+.| .++-|..+.+-+.+
T Consensus 912 kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k 991 (1636)
T KOG3616|consen 912 KAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK 991 (1636)
T ss_pred HHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh
Confidence 455566666777777766655431 11110 0 111 1111222333 34444433333332
Q ss_pred hcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 467 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
. .-+.+...++..+...|++++|.+.|-+..+.+
T Consensus 992 ~--k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 992 D--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred c--cCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 2 246778888999999999999988887776643
No 83
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=5.4e-10 Score=95.16 Aligned_cols=235 Identities=14% Similarity=0.099 Sum_probs=169.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH-HHHHHhcccc
Q 048766 205 NEVINGIAQFGDIEDAIMILSSMP--SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS-TMLSGIAGLS 281 (525)
Q Consensus 205 ~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~~ 281 (525)
+-+..+|.+.|.+.+|++.|+... .|-+.||..|-+.|.+..++..|+.+|.+-.+. -|..+||. ...+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 457788889999999998888766 377889999999999999999999999988875 44444443 3333444444
Q ss_pred chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361 (525)
Q Consensus 282 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (525)
+.+.+.++|+...+.. +.++.....+...|.-.++++-|+..|+++..
T Consensus 305 ~~~~a~~lYk~vlk~~--------------------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH--------------------------------PINVEAIACIAVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred hHHHHHHHHHHHHhcC--------------------------------CccceeeeeeeeccccCCChHHHHHHHHHHHH
Confidence 4444444444444332 22334444555667777888888888888888
Q ss_pred CCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC--hhHHHHHHHHHhccCChHHHHHHHHHh--CCCCc
Q 048766 362 VRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT--VEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSY 437 (525)
Q Consensus 362 ~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~ 437 (525)
-| .-++..|+.+.-.|...+. ++-++..|++.... .-.|+ ..+|..+.......||+.-|.+.|+-. ....+
T Consensus 353 mG--~~speLf~NigLCC~yaqQ-~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 353 MG--AQSPELFCNIGLCCLYAQQ-IDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred hc--CCChHHHhhHHHHHHhhcc-hhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 77 3456667777777777777 88888888887654 33343 567888888888889999998888875 33344
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHH
Q 048766 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477 (525)
Q Consensus 438 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 477 (525)
...++.|...-.+.|++++|..++..+....|+-.+...+
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTN 468 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccc
Confidence 6778888888888999999999999998888865444333
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=8.9e-08 Score=87.64 Aligned_cols=441 Identities=10% Similarity=0.010 Sum_probs=222.6
Q ss_pred HHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC--CC-cccHHHHHHHHHhcCChHH
Q 048766 11 RASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ--PS-VVSWNSLISGYVQSGKYRK 87 (525)
Q Consensus 11 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~ 87 (525)
.+....|+++.|...|...+..+ ++|...|..-..+|++.|++++|++=-.+-.+ |+ ...|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 34556788888888888888877 66888888888888888888888766555544 33 3467888888888888888
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHH-----HHHHhcCCHHHHHHHH
Q 048766 88 ALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI-----DMYGKCGSVEDAIGVF 162 (525)
Q Consensus 88 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~ 162 (525)
|+.-|.+-.+.. +.|...+.-+..+. ..+.+. +.. -.++..+..+. +.+...-.+-..+..+
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 888888777642 22344455555444 111111 111 11222222222 1122222222222222
Q ss_pred hhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCC--------------CCCcchHHHHHHHHHhcCCh-HHHHHHHhcC
Q 048766 163 GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP--------------NPDTISYNEVINGIAQFGDI-EDAIMILSSM 227 (525)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 227 (525)
..- +.. +..+.+-.....+.-.+.... ...+. .......-..++. ++...
T Consensus 156 ~~~----p~~----l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~d~~ee~~~----- 220 (539)
T KOG0548|consen 156 QKN----PTS----LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC--KQEHNGFPIIEDNTEERRV----- 220 (539)
T ss_pred hcC----cHh----hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc--cccCCCCCccchhHHHHHH-----
Confidence 111 110 011111111111111111110 00000 0000000000000 00000
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHH---
Q 048766 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV--- 304 (525)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--- 304 (525)
+.-..-...+.....+..+++.|++.+....+.. -+..-++....++...|........-....+.|.. ...-
T Consensus 221 -k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~kl 296 (539)
T KOG0548|consen 221 -KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKL 296 (539)
T ss_pred -HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHH
Confidence 0001123445566666667777777777766653 23333444445566666665555555444444321 1111
Q ss_pred ----HHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH-hHHHHHHHHH
Q 048766 305 ----ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS-VTFLNVLAAC 379 (525)
Q Consensus 305 ----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~ 379 (525)
+..+..+|.+.++++.|...|.+...+... -....+....++++...+...- +.|.. .....-...+
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~ 368 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY---INPEKAEEEREKGNEA 368 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHH
Confidence 112333555566667777666664311100 1112233344555555555444 44442 1122224455
Q ss_pred cCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHH
Q 048766 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVA 457 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A 457 (525)
.+.|+ +..|+..|.++++. -+-|...|..-.-+|.+.|.+..|++-.+.. ...|+ ...|..-+.++....+++.|
T Consensus 369 Fk~gd-y~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkA 445 (539)
T KOG0548|consen 369 FKKGD-YPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKA 445 (539)
T ss_pred HhccC-HHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 66677 88888888887754 2335777777777888888888777776654 33343 34444445555566778888
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHH
Q 048766 458 RISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 458 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (525)
++.|+++++.+|++......+.++...........++.
T Consensus 446 leay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 446 LEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 88888888888877777776666666543333333333
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.21 E-value=1.1e-07 Score=88.94 Aligned_cols=378 Identities=13% Similarity=0.137 Sum_probs=230.5
Q ss_pred ccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCC---ChhhHHHHHHHHHhCCChHHHHHH
Q 048766 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK---DIISWNSVIAASARNGNLELAFGF 192 (525)
Q Consensus 116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 192 (525)
..+++...++..+.+.+ +.+....+.....-.+...|+.++|......-... +.++|+.+.-.+....++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 44555555555555555 23334444444444445567777777666665543 445677777777777777777777
Q ss_pred HhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCC
Q 048766 193 LHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS--P-NSSSWNSILTGYVNRNRVPEALHLFGEMQSKD-VPM 265 (525)
Q Consensus 193 ~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~ 265 (525)
|... .+.|...+..+.-.-++.++++.....-....+ | ....|..++.++.-.|+...|..++++..... ..|
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 7766 334556666666666677777766655555443 2 33457888888888999999999999887764 356
Q ss_pred CHHHHHHHHHH------hccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC--CCHhHHH
Q 048766 266 DEYTFSTMLSG------IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR--KNLVTWN 337 (525)
Q Consensus 266 ~~~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 337 (525)
+...+...... ....|.++.|.+.+..-... +......-..-...+.+.+++++|..++..+.. ||...|.
T Consensus 178 s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy 256 (700)
T KOG1156|consen 178 SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY 256 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH
Confidence 66665544332 34556667776665544332 122333344556778889999999999999874 4444444
Q ss_pred -HHHHHHHhcCChhHHH-HHHHHHhhCCCCCCCHhHHHHH-HHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHH
Q 048766 338 -AMITGYARNGDLTKVI-ELFEQLKTVRDLQPDSVTFLNV-LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414 (525)
Q Consensus 338 -~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 414 (525)
.+..++.+..+.-++. .+|....+ ..|.......+ +.......- .+...+++....+. |+++- +..+..
T Consensus 257 ~~l~~~lgk~~d~~~~lk~ly~~ls~---~y~r~e~p~Rlplsvl~~eel-~~~vdkyL~~~l~K-g~p~v---f~dl~S 328 (700)
T KOG1156|consen 257 EGLEKALGKIKDMLEALKALYAILSE---KYPRHECPRRLPLSVLNGEEL-KEIVDKYLRPLLSK-GVPSV---FKDLRS 328 (700)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhh---cCcccccchhccHHHhCcchh-HHHHHHHHHHHhhc-CCCch---hhhhHH
Confidence 4445554444444444 67776665 33432222222 222222222 33344555555554 66553 333333
Q ss_pred HHhccCChHH----HHHHHHHh-C------------CCCchhHHH--HHHHHHhcCCChHHHHHHHHHHHhhcCCChhHH
Q 048766 415 LMGQKGEVWR----AQRMIREL-G------------FGSYGVVWR--ALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475 (525)
Q Consensus 415 ~~~~~g~~~~----A~~~~~~~-~------------~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 475 (525)
.|-.....+= +..+...+ + .+|.+..|. .+...+-..|+++.|...++.++..-|.-++.|
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly 408 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELY 408 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHH
Confidence 3332221111 11111111 1 245555554 456677889999999999999999999888889
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 476 VMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
..=++++...|+.++|...+++.++...
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 9999999999999999999999987655
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=6.4e-09 Score=98.07 Aligned_cols=91 Identities=10% Similarity=0.015 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCC----------CCcc-cHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCC--
Q 048766 203 SYNEVINGIAQFGDIEDAIMILSSMPS----------PNSS-SWNSILTGYVNRNRVPEALHLFGEMQSK---DVPMD-- 266 (525)
Q Consensus 203 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~-- 266 (525)
+++.|...|.+.|++++|...+++..+ +.+. .++.++..+...+++++|..+++...+. -..++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 344445555666666555555544431 2221 3566677778888888888888765431 01111
Q ss_pred --HHHHHHHHHHhccccchHHHHHHHHHH
Q 048766 267 --EYTFSTMLSGIAGLSALTWGMLIHSCV 293 (525)
Q Consensus 267 --~~~~~~l~~~~~~~~~~~~a~~~~~~~ 293 (525)
..++..+...+...|++++|..+++.+
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 234444444444455555554444444
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.3e-09 Score=100.22 Aligned_cols=217 Identities=14% Similarity=0.096 Sum_probs=168.5
Q ss_pred hccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC---CCHhHHHHHHHHHHhcCChhHHH
Q 048766 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR---KNLVTWNAMITGYARNGDLTKVI 353 (525)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 353 (525)
+.+.|++.+|.-.|+..++.+ |-+...|..|.......++-..|+..++++.+ .|....-.|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 346677888888888777776 66778888888888888888888888887763 35566777777888888888888
Q ss_pred HHHHHHhhCCCCCCCHhHHHHHH-----------HHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCCh
Q 048766 354 ELFEQLKTVRDLQPDSVTFLNVL-----------AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422 (525)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~-----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 422 (525)
+.++.-... .|- |..+. ..+..... +.+..++|-++....+..+|+.+...|+-.|.-.|++
T Consensus 374 ~~L~~Wi~~---~p~---y~~l~~a~~~~~~~~~~s~~~~~~-l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 374 KMLDKWIRN---KPK---YVHLVSAGENEDFENTKSFLDSSH-LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHh---Ccc---chhccccCccccccCCcCCCCHHH-HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 888876552 211 10111 11222222 4556667767666546668888999999999999999
Q ss_pred HHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 423 WRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 423 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
++|+..|+.+ ..+| |...|+.|+.+++...+.++|+..|.+++++.|.-..+...|+..|...|.|+||.++|-..+.
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999987 4455 4778999999999999999999999999999999999999999999999999999999887655
Q ss_pred c
Q 048766 501 R 501 (525)
Q Consensus 501 ~ 501 (525)
.
T Consensus 527 m 527 (579)
T KOG1125|consen 527 M 527 (579)
T ss_pred h
Confidence 3
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.17 E-value=2e-08 Score=89.39 Aligned_cols=226 Identities=10% Similarity=0.043 Sum_probs=134.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcC
Q 048766 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD-ASIVVASALLDMYSKC 315 (525)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 315 (525)
.+.+++...|+++.++ .++.... .|.......+...+...++.+.+..-++........ .+..+......++...
T Consensus 40 ~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~ 115 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE 115 (290)
T ss_dssp HHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence 3445555555554332 2222222 444444444444443333333333333332222212 2333333344556667
Q ss_pred CCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHc---CCCCCcchHHHH
Q 048766 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS---HTDIPFDKVSEY 392 (525)
Q Consensus 316 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~~~~~~~a~~~ 392 (525)
|+++.|.+++... .+.......+..|.+.++++.|.+.++.|.+ ...|.. ...+..++. ..|+.+.+|.-+
T Consensus 116 ~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~-l~qLa~awv~l~~g~e~~~~A~y~ 189 (290)
T PF04733_consen 116 GDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSI-LTQLAEAWVNLATGGEKYQDAFYI 189 (290)
T ss_dssp CHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHH-HHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred CCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHH-HHHHHHHHHHHHhCchhHHHHHHH
Confidence 8888887777655 4556666677888899999999999999987 555543 333443322 223338999999
Q ss_pred HHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCCh-HHHHHHHHHHHhhcC
Q 048766 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDL-DVARISAAEVIKLEG 469 (525)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~p 469 (525)
|+++.. ...+++.+.+.++.++...|++++|.+++++. ..+.++.++..++......|+. +.+.+.+.++....|
T Consensus 190 f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 190 FEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 999875 45678888888888888889999998888886 3334466666777777777776 677788888888888
Q ss_pred CChhH
Q 048766 470 DSDYV 474 (525)
Q Consensus 470 ~~~~~ 474 (525)
+++..
T Consensus 268 ~h~~~ 272 (290)
T PF04733_consen 268 NHPLV 272 (290)
T ss_dssp TSHHH
T ss_pred CChHH
Confidence 76544
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=9.1e-08 Score=87.60 Aligned_cols=397 Identities=11% Similarity=0.000 Sum_probs=217.0
Q ss_pred CccchHHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHH
Q 048766 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLIS 77 (525)
Q Consensus 1 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~ 77 (525)
||...|..-..+++..|+++.|.+--..-++.. |.=+..|.....++.-.|++++|+.-|.+-.+ .|...++-+..
T Consensus 34 ~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~ 112 (539)
T KOG0548|consen 34 TNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQ 112 (539)
T ss_pred CccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHH
Confidence 466777888889999999999988777766664 33367888899998889999999999988776 34455666666
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHH-----HHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhc
Q 048766 78 GYVQSGKYRKALNLFVELERSEIYADAYSFTSALA-----ACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC 152 (525)
Q Consensus 78 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (525)
++ ..+.+. +.. .-++..|..+.. .+.....+. .++... +.+ +.+. ..|..-
T Consensus 113 a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~---~~l~~~-~~~-p~~l-------~~~l~d 168 (539)
T KOG0548|consen 113 AY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYV---KILEII-QKN-PTSL-------KLYLND 168 (539)
T ss_pred hh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHH---HHHHHh-hcC-cHhh-------hccccc
Confidence 55 111111 110 111222222211 111111111 111111 111 1111 111111
Q ss_pred CCHHHHHHHHhhccCCChhhHHHHHHHH-HhCCChHHHHHHHhcCCC---------------CCcchHHHHHHHHHhcCC
Q 048766 153 GSVEDAIGVFGEMIDKDIISWNSVIAAS-ARNGNLELAFGFLHRLPN---------------PDTISYNEVINGIAQFGD 216 (525)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~ 216 (525)
..+..+...+...... .....-... .....+. ....+ .-..-...+.++.-+..+
T Consensus 169 ~r~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~------~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDEL---LFYASGIEILASMAEPC------KQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HHHHHHHHHHhcCccc---cccccccccCCCCCCcc------cccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 1122222222111000 000000000 0000000 00000 011223445666666667
Q ss_pred hHHHHHHHhcCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH-------HHHHHHhccccchHHHH
Q 048766 217 IEDAIMILSSMPS--PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF-------STMLSGIAGLSALTWGM 287 (525)
Q Consensus 217 ~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~ 287 (525)
++.|...+....+ .+..-++....+|...|.+.++...-....+.|.. ...-| ..+..++.+.++++.+.
T Consensus 240 f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 240 FETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 7777776665553 23334556666777777777766666655554421 11122 22334566677888888
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc--CCCHh-HHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 048766 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC--RKNLV-TWNAMITGYARNGDLTKVIELFEQLKTVRD 364 (525)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 364 (525)
..|.+.......|+. ..+....+++........ .|... -...-...+.+.|++..|+..|.++++
T Consensus 319 ~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--- 386 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK--- 386 (539)
T ss_pred HHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh---
Confidence 888887665444433 223344555555544443 23221 122226677889999999999999998
Q ss_pred CCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHH
Q 048766 365 LQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVW 441 (525)
Q Consensus 365 ~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 441 (525)
..| |...|..-..+|.+.+. +..|++-.+...+. .|+ ...|..=+.++.-..++++|.+.|++. ...|+..-+
T Consensus 387 r~P~Da~lYsNRAac~~kL~~-~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGE-YPEALKDAKKCIEL---DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 456 57888888999999999 99999888877743 554 445555566666677899999999886 555665444
Q ss_pred HHHHHHH
Q 048766 442 RALLSAS 448 (525)
Q Consensus 442 ~~l~~~~ 448 (525)
..-+.-|
T Consensus 463 ~~~~~rc 469 (539)
T KOG0548|consen 463 IDGYRRC 469 (539)
T ss_pred HHHHHHH
Confidence 3333333
No 90
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.16 E-value=4e-07 Score=86.42 Aligned_cols=348 Identities=14% Similarity=0.100 Sum_probs=214.3
Q ss_pred HHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHH
Q 048766 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188 (525)
Q Consensus 109 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 188 (525)
..+.+......|.+|..+++.+.... .-...|..+...|+..|+++.|+++|-+.- .++.-|..|.+.|+|+.
T Consensus 737 kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHH
Confidence 34555667788999999998877653 344567788899999999999999986642 34556788999999999
Q ss_pred HHHHHhcCCC--CCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 048766 189 AFGFLHRLPN--PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266 (525)
Q Consensus 189 a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 266 (525)
|.++-.+... .....|.+-..-+-+.|++.+|++++-.+..|+. -|..|-+.|..+..+++..+-... .-
T Consensus 810 a~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l 881 (1636)
T KOG3616|consen 810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HL 881 (1636)
T ss_pred HHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---hh
Confidence 9999988843 4455666667778889999999999998888874 467888999999988887654321 12
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHh-----HHH----
Q 048766 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV-----TWN---- 337 (525)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~---- 337 (525)
..|...+..-+...|++..|..-|-+..+ |.+-+++|...+-|++|.++-+.--..|.. .|.
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksig 952 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIG 952 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhC
Confidence 34556667777888998888877655433 445667777778888887766543322211 111
Q ss_pred ---------------HHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCC
Q 048766 338 ---------------AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402 (525)
Q Consensus 338 ---------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~ 402 (525)
.-+..-+..+-++-|.++-+-..+.. .|.. ...+..-+-..|+ ++.|.+.|-+..+..
T Consensus 953 gdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~v--hlk~a~~ledegk-~edaskhyveaikln-- 1025 (1636)
T KOG3616|consen 953 GDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEV--HLKLAMFLEDEGK-FEDASKHYVEAIKLN-- 1025 (1636)
T ss_pred cHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--Cccc--hhHHhhhhhhccc-hhhhhHhhHHHhhcc--
Confidence 11122233444555555544443322 2222 2233444566777 888888777766431
Q ss_pred CCChhHHHH-------------------HHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048766 403 KPTVEHCCS-------------------MIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463 (525)
Q Consensus 403 ~~~~~~~~~-------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 463 (525)
.--.+|.. -+.++.+..+++.|.++-+.-....-+.++..-.+.....||+.+|..++-+
T Consensus 1026 -tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllr 1104 (1636)
T KOG3616|consen 1026 -TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLR 1104 (1636)
T ss_pred -cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheee
Confidence 11111111 1223334444444444433321111133344444555667888888777655
Q ss_pred HHhhcCCChhHHHHHHHHHhhccChhHHHHHHH
Q 048766 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496 (525)
Q Consensus 464 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (525)
+- .|+ ..++-|...+.|.+|+++-+
T Consensus 1105 an--kp~------i~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1105 AN--KPD------IALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred cC--CCc------hHHHHHHHhccChHHHHHHH
Confidence 42 242 12344556677777766544
No 91
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.15 E-value=5.5e-08 Score=95.08 Aligned_cols=131 Identities=8% Similarity=-0.057 Sum_probs=71.7
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHH----HHHHHHhccCChHHHHHHHHHhCCCCchhHHHHH
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC----SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRAL 444 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 444 (525)
.+.|.+.....-+.+. ++.|.+...+...-...+-+...|+ .+.+.++..|.++.|...+.......+..+...-
T Consensus 967 ~fAy~~~gstlEhL~e-y~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~ 1045 (1238)
T KOG1127|consen 967 CFAYAANGSTLEHLEE-YRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTD 1045 (1238)
T ss_pred hHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhh
Confidence 4555555554444444 5555554444332111122333333 3455666677777776666544322232222222
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCCh---hHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSD---YVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
+.. .-.|+++++.+.|++++.+--++. .....++.+...++..+.|...+-+....
T Consensus 1046 l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1046 LTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred HHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 222 335788999999999988653332 34556677777778888887776655443
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.15 E-value=2.1e-07 Score=80.35 Aligned_cols=311 Identities=14% Similarity=0.092 Sum_probs=158.6
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHH---HHHHhCCChHHHHHHHhcC--CCCCcch-HHHHHHHHHhc
Q 048766 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI---AASARNGNLELAFGFLHRL--PNPDTIS-YNEVINGIAQF 214 (525)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~--~~~~~~~-~~~l~~~~~~~ 214 (525)
-...+.+.+...|++..|+.-|...++-|+..|.++. ..|...|+...|+.-+.+. .+||-.. -.--...+.+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 3344566666777888888888777777776665553 3455566655555555554 2232211 11122334445
Q ss_pred CChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHH
Q 048766 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294 (525)
Q Consensus 215 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 294 (525)
|.++.|..-|+.+.+.++. .|...++..-+.... ........+..+...|+...++.....++
T Consensus 120 Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ai~~i~~ll 182 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQNAIEMITHLL 182 (504)
T ss_pred ccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhhHHHHHHHHH
Confidence 5555555444444321110 000000000000000 00111222334455666677777776666
Q ss_pred HhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhH
Q 048766 295 KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371 (525)
Q Consensus 295 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 371 (525)
+.. +-+...+..-..+|...|++..|+.=++... ..+....--+-..+...|+.+.++...++..+ +.||...
T Consensus 183 Ei~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~ 258 (504)
T KOG0624|consen 183 EIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKL 258 (504)
T ss_pred hcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhh
Confidence 654 4566666666777777777777765554443 44555555556666677777777777777776 6666421
Q ss_pred -HH---HH---------HHHHcCCCCCcchHHHHHHHhhhhhCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHHh-
Q 048766 372 -FL---NV---------LAACSHTDIPFDKVSEYFESMTKDYGIKPT-----VEHCCSMIRLMGQKGEVWRAQRMIREL- 432 (525)
Q Consensus 372 -~~---~l---------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~- 432 (525)
|. .+ +......+. |.++.+-.+...+. .|. ...+..+-.+|...|++.+|++...+.
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~-~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKH-WTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 11 11 011222333 44444444444432 232 122333344455556666666666554
Q ss_pred CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 433 GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 433 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
.+.|+ ..++..-..+|.-...++.|+.-|+++.+.+|+|..+-.
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 44444 445555556666666666666666666666665554443
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.14 E-value=1.6e-08 Score=96.67 Aligned_cols=256 Identities=11% Similarity=0.046 Sum_probs=152.5
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-----
Q 048766 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC----- 315 (525)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 315 (525)
.+...|++++|++.+++-... +.............+.+.|+.++|..++..+++.+ |.+..-|..+..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 344556666666666543322 22222333344455556666666666666666655 34444444444444221
Q ss_pred CCHHHHHHHHHhccCCC--HhHHHHHHHHHHhcCCh-hHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHH
Q 048766 316 GQVEIADSMFRSLCRKN--LVTWNAMITGYARNGDL-TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392 (525)
Q Consensus 316 g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~ 392 (525)
.+.+...++++++.... ......+.-.+.....+ ..+...+..+...| +++ +|..+-..|....+ .+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg-vPs---lF~~lk~Ly~d~~K-~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG-VPS---LFSNLKPLYKDPEK-AAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC-Cch---HHHHHHHHHcChhH-HHHHHHH
Confidence 13445555555553211 11111111111111111 23445555666666 433 33344444444433 4444444
Q ss_pred HHHhhhhh-------------CCCCCh--hHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChH
Q 048766 393 FESMTKDY-------------GIKPTV--EHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLD 455 (525)
Q Consensus 393 ~~~~~~~~-------------~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~ 455 (525)
+....... .-+|+. .++..+...|...|++++|++.+++. ...|. +..|..-+..+.+.|++.
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 44433211 112333 24466788889999999999999986 55566 667778888999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 456 VARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 456 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+|.+.++.+.++++.|...-...+..+.+.|++++|.+.+......+.
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999999999999999998877765
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.13 E-value=3.5e-09 Score=94.17 Aligned_cols=248 Identities=11% Similarity=0.017 Sum_probs=166.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCH
Q 048766 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318 (525)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (525)
++-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+. .++.+.. +|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344556788888886665 222221223344556677888888766543 3333333 66666666666555444566
Q ss_pred HHHHHHHHhcc-CC---CHhHHHH-HHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHH
Q 048766 319 EIADSMFRSLC-RK---NLVTWNA-MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393 (525)
Q Consensus 319 ~~A~~~~~~~~-~~---~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~ 393 (525)
+.+..-+++.. .+ +..++.. ....+...|++++|++++.+. .+.......+..+.+.++ ++.|.+.+
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R-~dlA~k~l 154 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNR-PDLAEKEL 154 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCC-HHHHHHHH
Confidence 66666665544 22 1122322 234566789999999988642 345666778889999999 99999999
Q ss_pred HHhhhhhCCCCChhHHHHHHHHH----hccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 048766 394 ESMTKDYGIKPTVEHCCSMIRLM----GQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
+.|. .+..|. +...++.++ .-.+.+.+|..+|+++ ...+++.+.+.++.++...|++++|.+.++++++.
T Consensus 155 ~~~~---~~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 155 KNMQ---QIDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHH---CCSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHHH---hcCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9997 445553 333344433 3345799999999999 44567788888889999999999999999999999
Q ss_pred cCCChhHHHHHHHHHhhccCh-hHHHHHHHHHHHcCC
Q 048766 468 EGDSDYVYVMLCNLYTSHGNW-DVASVMRNFMRERGL 503 (525)
Q Consensus 468 ~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~ 503 (525)
+|.++.++..++.+....|+. +.+.+++.++.+..+
T Consensus 231 ~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 231 DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 999999999999999999998 667788888877543
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=5.4e-07 Score=86.60 Aligned_cols=366 Identities=15% Similarity=0.100 Sum_probs=190.1
Q ss_pred HhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC-------------CCcccHHHHHHHH
Q 048766 13 SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ-------------PSVVSWNSLISGY 79 (525)
Q Consensus 13 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------------~~~~~~~~ll~~~ 79 (525)
|...|+.+.|.+-...+. +..+|..+.++|.+..+.+-|.-.+..|.. ++ ..--.+.-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 445577777665555443 334777788888877777777666655543 21 1111122223
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHH
Q 048766 80 VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159 (525)
Q Consensus 80 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 159 (525)
...|..++|..+|++-++ |..|=..|-..|.|++|.++-+.=-.. .=..+|......+-..+|.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHH
Confidence 455777777777777665 233334455667777777665432111 11235555566666677777777
Q ss_pred HHHhhccCC-----------------------ChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 048766 160 GVFGEMIDK-----------------------DIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216 (525)
Q Consensus 160 ~~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 216 (525)
+.|++.-.+ |...|.-...-+-..|+.+.|+.+|.... -|-+++...|-.|+
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGK 953 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccC
Confidence 777665221 22222222333334555555555555432 23444445555555
Q ss_pred hHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHh---------------cccc
Q 048766 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI---------------AGLS 281 (525)
Q Consensus 217 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~---------------~~~~ 281 (525)
.++|-++-++- .|......+.+.|-..|++.+|..+|...+. +...|+.| +...
T Consensus 954 ~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen 954 TDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGS 1022 (1416)
T ss_pred chHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCch
Confidence 55555555442 3444455566666666666666666655432 11111111 1112
Q ss_pred chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc--------------CCCHhHHHHHHHHHHhcC
Q 048766 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC--------------RKNLVTWNAMITGYARNG 347 (525)
Q Consensus 282 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------~~~~~~~~~l~~~~~~~~ 347 (525)
+.-.|-.+|++.- .. +...+..|-+.|.+.+|.++-=.-. ..|+...+.-...+....
T Consensus 1023 d~v~aArYyEe~g---~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1023 DLVSAARYYEELG---GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred hHHHHHHHHHHcc---hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence 2223333333221 00 1112334555666555544321111 235555555566667777
Q ss_pred ChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChH
Q 048766 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVW 423 (525)
Q Consensus 348 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~ 423 (525)
++++|..++-..++ |...+..|...+ ..--.++-+.|.-...-.|+ ......+.+.+.++|.+.
T Consensus 1095 qyekAV~lL~~ar~----------~~~AlqlC~~~n--v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh 1162 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLARE----------FSGALQLCKNRN--VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYH 1162 (1416)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHhcCC--CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchH
Confidence 77777777776665 445555555544 34444444444322112233 334566777888888888
Q ss_pred HHHHHHHHhC
Q 048766 424 RAQRMIRELG 433 (525)
Q Consensus 424 ~A~~~~~~~~ 433 (525)
.|.+-|..++
T Consensus 1163 ~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1163 AATKKFTQAG 1172 (1416)
T ss_pred HHHHHHhhhh
Confidence 8887776653
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=5.6e-07 Score=86.50 Aligned_cols=384 Identities=11% Similarity=0.094 Sum_probs=217.0
Q ss_pred CcccHHHHHH--HHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHc-c--------cC
Q 048766 68 SVVSWNSLIS--GYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY-S--------LE 136 (525)
Q Consensus 68 ~~~~~~~ll~--~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~--------~~ 136 (525)
|..+-..++. .|..-|+.+.|.+-++..+. ...|..+.+.|.+.++++-|.-.+-.|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4444444543 34556777777766655542 345667777777666666555444333221 0 01
Q ss_pred CCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCC-CCcchHHHHHHHHHhcC
Q 048766 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-PDTISYNEVINGIAQFG 215 (525)
Q Consensus 137 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~ 215 (525)
++ ..-..........|.+++|+.+|++...- ..|=..|...|.+++|.++-+.-.. .-..||.....-+...+
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~-----DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY-----DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 11 12222233345667888888888776553 3344456667888888777665422 22345666666677778
Q ss_pred ChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 048766 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295 (525)
Q Consensus 216 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 295 (525)
|.+.|++.|++...+-...+..|. .++.....+.+.+. |...|.....-+...|+.+.|+.+|....+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 888888888765433222222221 12333333333332 335555566666677888888887776654
Q ss_pred hCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCC----C-CCCHh
Q 048766 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD----L-QPDSV 370 (525)
Q Consensus 296 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~p~~~ 370 (525)
|-++++..|-.|+.++|.++-++- .|......+.+.|-..|++.+|...|.+...-.+ . ..|.
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~- 1008 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM- 1008 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH-
Confidence 335666667778888887776543 4555666677888888888888888876654110 0 0000
Q ss_pred HHHHHHHHHc-CCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHH-------------hCCCC
Q 048766 371 TFLNVLAACS-HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE-------------LGFGS 436 (525)
Q Consensus 371 ~~~~l~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------~~~~~ 436 (525)
-..|...+. ..+.+.-.|-++|++. |.. ...-+..|-++|.+.+|+++--+ +....
T Consensus 1009 -~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~s 1078 (1416)
T KOG3617|consen 1009 -KDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGS 1078 (1416)
T ss_pred -HHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCC
Confidence 001111111 1121144455555543 211 22334567788888877776321 12334
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHHHHHHhhc----------------------CC---------ChhHHHHHHHHHhhc
Q 048766 437 YGVVWRALLSASGACSDLDVARISAAEVIKLE----------------------GD---------SDYVYVMLCNLYTSH 485 (525)
Q Consensus 437 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------------------p~---------~~~~~~~l~~~~~~~ 485 (525)
|+..+......+....++++|..++-.+.+.. |. ....+..++..|.++
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQ 1158 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQ 1158 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhc
Confidence 56666666777777778888877654433210 21 124567889999999
Q ss_pred cChhHHHHHHHH
Q 048766 486 GNWDVASVMRNF 497 (525)
Q Consensus 486 g~~~~A~~~~~~ 497 (525)
|.|..|.+-|.+
T Consensus 1159 G~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1159 GAYHAATKKFTQ 1170 (1416)
T ss_pred cchHHHHHHHhh
Confidence 999988876654
No 97
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.2e-06 Score=86.22 Aligned_cols=328 Identities=11% Similarity=0.104 Sum_probs=166.7
Q ss_pred HHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChH
Q 048766 7 FHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYR 86 (525)
Q Consensus 7 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 86 (525)
..|..-+-+.+++..-..+++..++.| ..++.++++|...|..+++-.+- .+.+- ..-=+..+.-||...++-
T Consensus 842 deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fLkeN----~yYDs~vVGkYCEKRDP~ 914 (1666)
T KOG0985|consen 842 DELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER--FLKEN----PYYDSKVVGKYCEKRDPH 914 (1666)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH--hcccC----CcchhhHHhhhhcccCCc
Confidence 345555666778888888899999998 77899999999999877653221 11111 111112222233333222
Q ss_pred HHHHHHHHHHh----cCCCCCHhhHHHHHHHHcccCChH-----------HHHHHHHHHHHcccC--CCcchhhHHHHHH
Q 048766 87 KALNLFVELER----SEIYADAYSFTSALAACGQLGSLQ-----------LGMAIHSKIVKYSLE--RGVVIANCLIDMY 149 (525)
Q Consensus 87 ~A~~~~~~m~~----~~~~p~~~~~~~ll~~~~~~~~~~-----------~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 149 (525)
-|.-.+++-.- -++.-....|....+-+.+..+.+ --+++.++.++.+++ .|+.-....+.++
T Consensus 915 lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAf 994 (1666)
T KOG0985|consen 915 LACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAF 994 (1666)
T ss_pred eEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHH
Confidence 22111110000 000000111111111111111111 112333344333322 2333444455555
Q ss_pred HhcCCHHHHHHHHhhcc-CCChh-----hHHH---------------------------HHHHHHhCCChHHHHHHHhcC
Q 048766 150 GKCGSVEDAIGVFGEMI-DKDII-----SWNS---------------------------VIAASARNGNLELAFGFLHRL 196 (525)
Q Consensus 150 ~~~g~~~~a~~~~~~~~-~~~~~-----~~~~---------------------------l~~~~~~~~~~~~a~~~~~~~ 196 (525)
...+-..+-+++++++. ++++. .-+. +.......+-+++|..+|++.
T Consensus 995 MtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf 1074 (1666)
T KOG0985|consen 995 MTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF 1074 (1666)
T ss_pred HhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh
Confidence 55555555566655552 22111 1111 223333444455555555544
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 048766 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276 (525)
Q Consensus 197 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 276 (525)
. .+......|+ -.-+.++.|.+.-++..+ +..|..+..+-.+.|...+|.+-|-+. -|+..|..++..
T Consensus 1075 ~-~n~~A~~VLi---e~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~ 1142 (1666)
T KOG0985|consen 1075 D-MNVSAIQVLI---ENIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDV 1142 (1666)
T ss_pred c-ccHHHHHHHH---HHhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHH
Confidence 1 1111111111 123444555555444433 346888888888888888887766432 256678888888
Q ss_pred hccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 048766 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356 (525)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 356 (525)
+.+.|.+++-..++...++..-.|.+. +.|+-+|++.+++.+.++++. .||......+.+-|...+.++.|.-+|
T Consensus 1143 a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1143 ASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 888888888888887777766555543 457778888888777666543 445444455555555555555555444
Q ss_pred HH
Q 048766 357 EQ 358 (525)
Q Consensus 357 ~~ 358 (525)
..
T Consensus 1218 ~~ 1219 (1666)
T KOG0985|consen 1218 SN 1219 (1666)
T ss_pred HH
Confidence 43
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.07 E-value=5e-07 Score=88.69 Aligned_cols=442 Identities=12% Similarity=0.066 Sum_probs=242.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HhhHHHHHH
Q 048766 39 FVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD---AYSFTSALA 112 (525)
Q Consensus 39 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~ 112 (525)
..|..|...|+...+...|.+.|+...+ .+..++......|++..+++.|..+.-..-+. .|- ...|...--
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhccc
Confidence 3566677777766677777777776665 34456666777777777777777763222221 111 112222223
Q ss_pred HHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCCh---hhHHHHHHHHHhCCChHHH
Q 048766 113 ACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI---ISWNSVIAASARNGNLELA 189 (525)
Q Consensus 113 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a 189 (525)
.+.+.++..++..-|+...... +.|...|..++.+|.++|.+..|.++|.+...-++ ..-.......+..|.+.+|
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 3455667777777776666553 44666777777777777777777777766644222 2222233345567777777
Q ss_pred HHHHhcCC----------CCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHH-HHHHhc-CC---hhHHHHH
Q 048766 190 FGFLHRLP----------NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL-TGYVNR-NR---VPEALHL 254 (525)
Q Consensus 190 ~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~-~~~~~~-~~---~~~a~~~ 254 (525)
+..+..+. ..-..++..+...+.-.|-...|.++++.-. ..+...+ ...+.. -. ...|..+
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~~~l~h~~~~~~~~Wi~asdac~~ 725 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFIVSLIHSLQSDRLQWIVASDACYI 725 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHHHHhhhhhHHHHHHHhHHHHH
Confidence 77766651 1112223333333333333333333333221 1111111 100000 00 1122222
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHhccccch---H---HHHHHHHHHHHhCCCchHHHHHHHHHHHHc----C---C-CHHH
Q 048766 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSAL---T---WGMLIHSCVIKQGLDASIVVASALLDMYSK----C---G-QVEI 320 (525)
Q Consensus 255 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~---g-~~~~ 320 (525)
|-... .+ .|+.....++..-....+.. + -+.+.+-.-.+. ..+...+..++..|.+ . + +...
T Consensus 726 f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 726 FSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 22222 11 22222222222211112211 1 011111111111 1112222223322222 2 2 2345
Q ss_pred HHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHh
Q 048766 321 ADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESM 396 (525)
Q Consensus 321 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 396 (525)
|...+.... ..+..+|+.|.-. ...|++.-+...|-+-.. ..| ...+|..+.-.+....+ ++.|...|...
T Consensus 802 Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~---sep~~~~~W~NlgvL~l~n~d-~E~A~~af~~~ 876 (1238)
T KOG1127|consen 802 AIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRF---SEPTCHCQWLNLGVLVLENQD-FEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhh---ccccchhheeccceeEEeccc-HHHhhHHHHhh
Confidence 666666655 4567788887765 566788888887777666 445 56778787777888888 99999999988
Q ss_pred hhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHh-------CCCCchhHHHHHHHHHhcCCChHHHHHHHHH-----
Q 048766 397 TKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIREL-------GFGSYGVVWRALLSASGACSDLDVARISAAE----- 463 (525)
Q Consensus 397 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----- 463 (525)
+ .+.|+ ...|..........|+.-++..+|..- +..++...|.....-....|++++-+...++
T Consensus 877 q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs 953 (1238)
T KOG1127|consen 877 Q---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSAS 953 (1238)
T ss_pred h---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 7 55664 444444444445678888888888752 4455666666655556667777666655544
Q ss_pred -----HHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHH
Q 048766 464 -----VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 464 -----~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
.+...|+...+|...+....+.+.+.+|..+..++.
T Consensus 954 ~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 954 LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444559999999999999999999999988887763
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.03 E-value=8.4e-07 Score=83.52 Aligned_cols=260 Identities=11% Similarity=-0.013 Sum_probs=146.1
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH---HHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 048766 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST---MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316 (525)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (525)
..+...|++++|.+.+++..+.. +.+...+.. ........+....+...+.. .....+........+...+...|
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcC
Confidence 34556777788887777776652 223333331 11111223344444444433 11112223344445566777888
Q ss_pred CHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH--hHHHHHHHHHcCCCCCcchHHH
Q 048766 317 QVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS--VTFLNVLAACSHTDIPFDKVSE 391 (525)
Q Consensus 317 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~~a~~ 391 (525)
++++|...+++.. +.+...+..+...+...|++++|+..+++........|+. ..+..+...+...|+ +++|.+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~-~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD-YEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC-HHHHHH
Confidence 8888888888775 3345567777778888888888888888877632111222 234466677777887 888888
Q ss_pred HHHHhhhhhCCCCChhHH-H--HHHHHHhccCChHHHHHH--H-HHh-CCCCc---hhHHHHHHHHHhcCCChHHHHHHH
Q 048766 392 YFESMTKDYGIKPTVEHC-C--SMIRLMGQKGEVWRAQRM--I-REL-GFGSY---GVVWRALLSASGACSDLDVARISA 461 (525)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~ 461 (525)
++++........+..... . .+...+...|....+.+. + ... +..+. .........++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 888765321111111111 1 223333334433322222 1 111 11011 112224566677888999999998
Q ss_pred HHHHhhc-C--------CChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 462 AEVIKLE-G--------DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 462 ~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
+.+.... . .........+.++...|++++|.+.+......+
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8876633 1 123345567777889999999999998887654
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=3e-07 Score=77.83 Aligned_cols=314 Identities=10% Similarity=0.022 Sum_probs=207.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcCCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHH-HHHHc
Q 048766 40 VSTALMGFYRKINSLADAHKMFVEIPQ--P-SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSA-LAACG 115 (525)
Q Consensus 40 ~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~ 115 (525)
-+.+.+..+.+..++++|++++....+ | +....+.+...|....++..|.+.++++.. ..|...-|... ...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHH
Confidence 456677777888999999999987766 3 566788888899999999999999999987 45766666543 24466
Q ss_pred ccCChHHHHHHHHHHHHcccCCCcc--hhhHHHHHHHhcCCHHHHHHHHhhccC-CChhhHHHHHHHHHhCCChHHHHHH
Q 048766 116 QLGSLQLGMAIHSKIVKYSLERGVV--IANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIAASARNGNLELAFGF 192 (525)
Q Consensus 116 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 192 (525)
+.+.+..|..+...|... ++.. ....-.......+|+..+..++++... .+..+.+...-...+.|+++.|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 788999999999887543 2211 111111223357899999999999974 5666777777778899999999999
Q ss_pred HhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCCC-----------------CCcc---------------cHHH
Q 048766 193 LHRLPN---PDTISYNEVINGIAQFGDIEDAIMILSSMPS-----------------PNSS---------------SWNS 237 (525)
Q Consensus 193 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------------~~~~---------------~~~~ 237 (525)
|+.... -++..-..+.-+..+.|+.+.|.+...++.+ +|+. .+|.
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 998832 2333333455566778999999988877641 2221 1333
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 048766 238 ILTGYVNRNRVPEALHLFGEMQSKD-VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316 (525)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (525)
-...+.+.|+++.|.+.+-.|.-.. -..|+.|...+.-. ...+++.....-+..+...+ |....+|..++-.||+..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhH
Confidence 3444567888888888888775432 34566666554321 22344555555566666664 456677888888888888
Q ss_pred CHHHHHHHHHhccCC-----CHhHHHHHHHHHHhcCChhHHHHHHHHHh
Q 048766 317 QVEIADSMFRSLCRK-----NLVTWNAMITGYARNGDLTKVIELFEQLK 360 (525)
Q Consensus 317 ~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 360 (525)
-++.|-.++.+-... +...|+.+=......-..+++.+-++.+.
T Consensus 325 yf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 325 YFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888877665432 22233332222222344555555554443
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.02 E-value=2.6e-08 Score=87.49 Aligned_cols=181 Identities=12% Similarity=0.015 Sum_probs=115.6
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhccC--C-CH---hHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHh---
Q 048766 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCR--K-NL---VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV--- 370 (525)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--- 370 (525)
.....+..+...+...|+++.|...++.+.. | +. .++..+..++...|++++|+..++++.+ ..|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR---LHPNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---HCcCCCchH
Confidence 3455566666777777777777777776652 2 22 3556666777777777777777777776 344322
Q ss_pred -HHHHHHHHHcCC--------CCCcchHHHHHHHhhhhhCCCCCh-hHHHHHHHHHhccCChHHHHHHHHHhCCCCchhH
Q 048766 371 -TFLNVLAACSHT--------DIPFDKVSEYFESMTKDYGIKPTV-EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440 (525)
Q Consensus 371 -~~~~l~~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 440 (525)
++..+...+... |+ +++|.+.++.+.+. .|+. ..+..+..... .... . ...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~---~--------~~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTA-AREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNR---L--------AGK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHH-HHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHH---H--------HHH
Confidence 233444444433 44 66677777776643 3332 12211111100 0000 0 011
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcCCC---hhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLEGDS---DYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
...+...+.+.|++++|+..++++++..|++ +.++..++.++...|++++|..+++.+....
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2245667889999999999999999987754 4789999999999999999999999887764
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.01 E-value=1.5e-06 Score=75.18 Aligned_cols=192 Identities=14% Similarity=0.120 Sum_probs=138.2
Q ss_pred chHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHH---HHHhcCChHHHHHHHHHHHhcCCCCCHhhH-HHHH
Q 048766 36 SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLIS---GYVQSGKYRKALNLFVELERSEIYADAYSF-TSAL 111 (525)
Q Consensus 36 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~---~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~ll 111 (525)
.++.-..-+...+.-.|++.+|+.-|....+.|+..|.++.+ .|...|+...|+.=+.+..+ ++||-..- ..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhc
Confidence 456666778888888899999999999999888888877664 67888999999988888887 57774322 1223
Q ss_pred HHHcccCChHHHHHHHHHHHHcccCCC--cch------------hhHHHHHHHhcCCHHHHHHHHhhccCC---ChhhHH
Q 048766 112 AACGQLGSLQLGMAIHSKIVKYSLERG--VVI------------ANCLIDMYGKCGSVEDAIGVFGEMIDK---DIISWN 174 (525)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~ 174 (525)
..+.++|.++.|..-|+..++...... ... ....+..+...||...|+.....+++- |...+.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 446789999999999999988752111 111 122344556678888888888777553 566677
Q ss_pred HHHHHHHhCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC
Q 048766 175 SVIAASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229 (525)
Q Consensus 175 ~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 229 (525)
.-..+|...|++..|+.-++.. ...++..+..+-..+-..|+.+.+....++..+
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 7777888888888887666555 556667777777777778888877777777665
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.00 E-value=5.5e-08 Score=81.70 Aligned_cols=152 Identities=9% Similarity=0.046 Sum_probs=115.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhcc
Q 048766 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419 (525)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 419 (525)
+..|...|+++.+....+.+.. |. . .+...++ .+++...++...+. -+.+...|..++..|...
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~-----~~-~-------~~~~~~~-~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~ 86 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD-----PL-H-------QFASQQT-PEAQLQALQDKIRA--NPQNSEQWALLGEYYLWR 86 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC-----cc-c-------cccCchh-HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHC
Confidence 3567788888887555543322 21 0 1122455 77777777777653 245788899999999999
Q ss_pred CChHHHHHHHHHh-CCCC-chhHHHHHHHHH-hcCCC--hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHH
Q 048766 420 GEVWRAQRMIREL-GFGS-YGVVWRALLSAS-GACSD--LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494 (525)
Q Consensus 420 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (525)
|++++|...+++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+...|++++|+..
T Consensus 87 g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 87 NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999987 4444 466677777764 66676 59999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccCC
Q 048766 495 RNFMRERGLRKEA 507 (525)
Q Consensus 495 ~~~~~~~~~~~~~ 507 (525)
|+++.+...+.++
T Consensus 167 ~~~aL~l~~~~~~ 179 (198)
T PRK10370 167 WQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHhhCCCCcc
Confidence 9999888765443
No 104
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=3.4e-05 Score=76.41 Aligned_cols=139 Identities=14% Similarity=0.207 Sum_probs=106.4
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHH
Q 048766 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412 (525)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 412 (525)
+..|..+..+-.+.|...+|++-|-+. .|+..|..++..+.+.|. +++-.+++.-.++. .-.|.+. ..|
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~-~edLv~yL~MaRkk-~~E~~id--~eL 1172 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGK-YEDLVKYLLMARKK-VREPYID--SEL 1172 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCc-HHHHHHHHHHHHHh-hcCccch--HHH
Confidence 457888888888888888888877643 355678899999999999 99999998777665 5555544 568
Q ss_pred HHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHH
Q 048766 413 IRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVAS 492 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 492 (525)
+-+|.+.++..+-.+++. .|+.......+.-|...|.++.|.-+|. +.+-|..|+..+...|++..|.
T Consensus 1173 i~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHH
Confidence 889999999888777664 4777778888888888899988887776 3455667777777777776665
Q ss_pred HH
Q 048766 493 VM 494 (525)
Q Consensus 493 ~~ 494 (525)
..
T Consensus 1241 D~ 1242 (1666)
T KOG0985|consen 1241 DA 1242 (1666)
T ss_pred HH
Confidence 43
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=4e-08 Score=90.62 Aligned_cols=249 Identities=13% Similarity=0.067 Sum_probs=184.0
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHH
Q 048766 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319 (525)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 319 (525)
.-+.+.|++.+|.-.|+..+..+ +-+...|..|.......++-..|+..+.+..+.. +.+..+...|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 44567888888888888887763 4456788888888888888888888888888877 667888888888899999888
Q ss_pred HHHHHHHhccCCCH-hHHHHHH---------HHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchH
Q 048766 320 IADSMFRSLCRKNL-VTWNAMI---------TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389 (525)
Q Consensus 320 ~A~~~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a 389 (525)
.|..+++.-....+ ..|.... ..+..........++|-++.......+|+.....|.-.|.-.|+ +++|
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e-fdra 449 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE-FDRA 449 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH-HHHH
Confidence 88888876631110 0000000 11112222344555555555443244677777777777777888 9999
Q ss_pred HHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 390 SEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 390 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
..+|+.+. .++| |..+|+.|+-.+....+.++|+..|+++ ...|. ..++..|+.+|...|.+.+|...|-.++.
T Consensus 450 iDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999998 4466 5788999999999999999999999997 77777 57889999999999999999999999998
Q ss_pred hcCC----------ChhHHHHHHHHHhhccChhHHHHH
Q 048766 467 LEGD----------SDYVYVMLCNLYTSHGNWDVASVM 494 (525)
Q Consensus 467 ~~p~----------~~~~~~~l~~~~~~~g~~~~A~~~ 494 (525)
+.+. +-.+|..|=.++...++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 7643 124677777777777777655444
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.97 E-value=9.1e-08 Score=96.80 Aligned_cols=201 Identities=12% Similarity=0.114 Sum_probs=155.6
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhccCC--------CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHh
Q 048766 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRK--------NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370 (525)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 370 (525)
|.+...|-..|....+.++.++|++++++..+. -...|.+++......|.-+...++|+++.+ ....-.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq---ycd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ---YCDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH---hcchHH
Confidence 444556777777788888888888888877521 233677777777777888888888888887 333456
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh----CCCCchhHHHHHHH
Q 048766 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSYGVVWRALLS 446 (525)
Q Consensus 371 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~ 446 (525)
.|..|...|.+.+. +++|.++++.|.++++ .....|..++..+.+..+-++|..+++++ +...........+.
T Consensus 1532 V~~~L~~iy~k~ek-~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEK-NDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHhhc-chhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 67788888888888 8899999999888655 66777888888888888888888888876 32233445556666
Q ss_pred HHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 447 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
.-.+.||.+++..+|+..+...|.-...|..+++.-.++|+.+.++.+|+++...++.+
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 77788899999999998888888888888888888888899999999998888877654
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.95 E-value=1.5e-08 Score=80.55 Aligned_cols=95 Identities=12% Similarity=-0.142 Sum_probs=57.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
+..++..+...|++++|...|+.+ ...| +...|..++.++...|++++|+..|+++++++|+++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 444555566666666666666654 2222 34555666666666666666666666666666666666666666666666
Q ss_pred ChhHHHHHHHHHHHcCC
Q 048766 487 NWDVASVMRNFMRERGL 503 (525)
Q Consensus 487 ~~~~A~~~~~~~~~~~~ 503 (525)
++++|+..|++..+..+
T Consensus 107 ~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 107 EPGLAREAFQTAIKMSY 123 (144)
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 66666666666655443
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=4e-06 Score=89.49 Aligned_cols=324 Identities=12% Similarity=-0.016 Sum_probs=207.6
Q ss_pred HHHHhCCChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHHhcCCC----CC---c-----ccHHHHHHH
Q 048766 178 AASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PN---S-----SSWNSILTG 241 (525)
Q Consensus 178 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~---~-----~~~~~l~~~ 241 (525)
......|+++.+...+..++ ..++.........+...|+++++...+..... .+ . .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34556778888878877762 12333444455566778899998888765431 11 1 112223345
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCH----HHHHHHHHHhccccchHHHHHHHHHHHHh----CCC-chHHHHHHHHHHH
Q 048766 242 YVNRNRVPEALHLFGEMQSKDVPMDE----YTFSTMLSGIAGLSALTWGMLIHSCVIKQ----GLD-ASIVVASALLDMY 312 (525)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~ 312 (525)
+...|++++|...+++....-...+. .....+...+...|+++.|...+...... +.. ........+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 66789999999999987763111121 23344555677889999999988887643 211 1123455667778
Q ss_pred HcCCCHHHHHHHHHhccC-------C----CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCC--HhHHHHHHHH
Q 048766 313 SKCGQVEIADSMFRSLCR-------K----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPD--SVTFLNVLAA 378 (525)
Q Consensus 313 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~p~--~~~~~~l~~~ 378 (525)
...|+++.|...+++... + ....+..+...+...|++++|...+++...... ..+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999988877641 1 112344555667778999999999988765310 1122 3334445566
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCCChhHH-----HHHHHHHhccCChHHHHHHHHHhCCC--Cchh----HHHHHHHH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHC-----CSMIRLMGQKGEVWRAQRMIRELGFG--SYGV----VWRALLSA 447 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~l~~~ 447 (525)
....|+ +++|.+.++..............+ ...+..+...|+.+.|...+...... .... .+..+..+
T Consensus 622 ~~~~G~-~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 622 SLARGD-LDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHcCC-HHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 778888 999999888875421111111111 11123445689999999998776211 1111 13456677
Q ss_pred HhcCCChHHHHHHHHHHHhhc------CCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 448 SGACSDLDVARISAAEVIKLE------GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 448 ~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
+...|++++|...+++++... +....++..++.++.+.|+.++|...+.+..+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 888999999999999998753 1223467788899999999999999999887754
No 109
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=3.1e-06 Score=79.69 Aligned_cols=197 Identities=9% Similarity=-0.000 Sum_probs=119.0
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC-----CCH--hHHHHHHH
Q 048766 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR-----KNL--VTWNAMIT 341 (525)
Q Consensus 269 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~l~~ 341 (525)
....+...+...|++++|...++...+.. +.+...+..+..++...|++++|...+++..+ ++. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33445556667777777777777777765 44566677778888888888888888887653 121 23556778
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCHhHH-H--HHHHHHcCCCCCcchHHHH--HHHhhhhhCCCC--ChhHHHHHHH
Q 048766 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTF-L--NVLAACSHTDIPFDKVSEY--FESMTKDYGIKP--TVEHCCSMIR 414 (525)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~~~~~~~a~~~--~~~~~~~~~~~~--~~~~~~~l~~ 414 (525)
.+...|++++|+.++++........+..... + .++.-+...|. ...+.+. +...... ..+. ........+.
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~ 272 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH-VDVGDRWEDLADYAAW-HFPDHGLAFNDLHAAL 272 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC-CChHHHHHHHHHHHHh-hcCcccchHHHHHHHH
Confidence 8888999999999999886532011222211 1 33333444443 3333332 1111111 1111 1122235667
Q ss_pred HHhccCChHHHHHHHHHh---CCC-C-c------hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 415 LMGQKGEVWRAQRMIREL---GFG-S-Y------GVVWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~---~~~-~-~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
++...|+.++|...++.+ ... + . .........++...|++++|.+.+..++...
T Consensus 273 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 273 ALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 778899999999999886 111 0 1 1122233445678999999999999998754
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.90 E-value=3.9e-05 Score=70.82 Aligned_cols=394 Identities=11% Similarity=0.100 Sum_probs=206.9
Q ss_pred HHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHh
Q 048766 29 ILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ--P-SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAY 105 (525)
Q Consensus 29 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 105 (525)
-++.+ |-|+.+|..|++-+... .++++++.++++.. | ....|..-|+.-.+..+++....+|.+.... ..+..
T Consensus 12 rie~n-P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlD 87 (656)
T KOG1914|consen 12 RIEEN-PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLD 87 (656)
T ss_pred HHhcC-CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHh
Confidence 34444 77999999999988766 99999999999876 4 4557899999999999999999999998764 34566
Q ss_pred hHHHHHHHHccc-CChHH----HHHHHHHH-HHcccCC-CcchhhHHHHHH---------HhcCCHHHHHHHHhhccCC-
Q 048766 106 SFTSALAACGQL-GSLQL----GMAIHSKI-VKYSLER-GVVIANCLIDMY---------GKCGSVEDAIGVFGEMIDK- 168 (525)
Q Consensus 106 ~~~~ll~~~~~~-~~~~~----a~~~~~~~-~~~~~~~-~~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~~- 168 (525)
.|...|.--.+. +.... ..+.|+-. .+.|+.+ +..+|+..+..+ ..+.+++...++++++...
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 676666654332 23222 23334333 3445443 334555555433 2333566677788777442
Q ss_pred --Ch-------hhHHHHHHH-------HHhCCChHHHHHHHhcC--------------CCCCc-------chHHHHHHHH
Q 048766 169 --DI-------ISWNSVIAA-------SARNGNLELAFGFLHRL--------------PNPDT-------ISYNEVINGI 211 (525)
Q Consensus 169 --~~-------~~~~~l~~~-------~~~~~~~~~a~~~~~~~--------------~~~~~-------~~~~~l~~~~ 211 (525)
+. ..|..=++. --+...+..|.++++++ +++.+ ..|..+|.--
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 11 122111111 11223355566655554 01100 0122222111
Q ss_pred HhcC------Ch--HHHHHHHhcCC---CCCcccHHHH-------HHHHHhcCC-------hhHHHHHHHHHhhCCCCCC
Q 048766 212 AQFG------DI--EDAIMILSSMP---SPNSSSWNSI-------LTGYVNRNR-------VPEALHLFGEMQSKDVPMD 266 (525)
Q Consensus 212 ~~~~------~~--~~a~~~~~~~~---~~~~~~~~~l-------~~~~~~~~~-------~~~a~~~~~~m~~~~~~~~ 266 (525)
-..+ .. ....-++++.. --....|..- -+.+...|+ .+++..+++...+.-..-+
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 00000000000 0011111111 112222222 3455555555544322334
Q ss_pred HHHHHHHHHHhc---cccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC-----CCHhHHHH
Q 048766 267 EYTFSTMLSGIA---GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR-----KNLVTWNA 338 (525)
Q Consensus 267 ~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 338 (525)
..+|..+..--. ..+..+....++..+...-...-..+|-.+++.-.+..-+..|+.+|.++.+ .++....+
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 444444333211 2223556666666665544333334555666666666677777777776652 24445556
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhH-HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC--hhHHHHHHHH
Q 048766 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVT-FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT--VEHCCSMIRL 415 (525)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~ 415 (525)
++.-|+ .++..-|.++|+--.+ .-+|... ....+.-+...++ -..+..+|++.... +++|+ ...|..+++-
T Consensus 408 ~mEy~c-skD~~~AfrIFeLGLk---kf~d~p~yv~~YldfL~~lNd-d~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 408 LMEYYC-SKDKETAFRIFELGLK---KFGDSPEYVLKYLDFLSHLND-DNNARALFERVLTS-VLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHh-cCChhHHHHHHHHHHH---hcCCChHHHHHHHHHHHHhCc-chhHHHHHHHHHhc-cCChhhhHHHHHHHHHH
Confidence 665554 3566777777776554 2333322 2344555555565 66677777777665 55554 4567777776
Q ss_pred HhccCChHHHHHHHHHh
Q 048766 416 MGQKGEVWRAQRMIREL 432 (525)
Q Consensus 416 ~~~~g~~~~A~~~~~~~ 432 (525)
=..-|+...+.++-++.
T Consensus 482 ES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHhcccHHHHHHHHHHH
Confidence 67777777777776654
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.90 E-value=4.7e-08 Score=77.63 Aligned_cols=124 Identities=11% Similarity=-0.014 Sum_probs=101.0
Q ss_pred HHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHH
Q 048766 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIRE 431 (525)
Q Consensus 353 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (525)
..++++..+ ..|+. +......+...|+ +++|...|+.+.. +.| +...|..++.++.+.|++++|+..|++
T Consensus 13 ~~~~~~al~---~~p~~--~~~~g~~~~~~g~-~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLS---VDPET--VYASGYASWQEGD-YSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHH---cCHHH--HHHHHHHHHHcCC-HHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 456677766 66764 4456777788888 9999999998874 345 678888899999999999999999998
Q ss_pred h-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 432 L-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 432 ~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
. ... .++..+..++.++...|++++|+..|+++++..|+++..+...+.+....
T Consensus 84 Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 84 ALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 7 333 45778888999999999999999999999999999999998887776543
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.85 E-value=3.3e-05 Score=82.55 Aligned_cols=328 Identities=11% Similarity=-0.019 Sum_probs=171.4
Q ss_pred HcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccC----CC---h-----hhHHHHHHHHH
Q 048766 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID----KD---I-----ISWNSVIAASA 181 (525)
Q Consensus 114 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~---~-----~~~~~l~~~~~ 181 (525)
....|++..+...+..+.......+..........+...|+++++...+..... .+ . .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666665542211122233334445555667888887777765521 11 1 11112233445
Q ss_pred hCCChHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHh
Q 048766 182 RNGNLELAFGFLHRLPN--PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259 (525)
Q Consensus 182 ~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 259 (525)
..|++++|...+++... +....+. -....+.+...+...|++++|...+++..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------~~~a~~~lg~~~~~~G~~~~A~~~~~~al 518 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYS-------------------------RIVATSVLGEVHHCKGELARALAMMQQTE 518 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHH-------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66777777666655411 1100000 00112333444455555555555555544
Q ss_pred hCCC---CC--CHHHHHHHHHHhccccchHHHHHHHHHHHHh----CCC--c-hHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 048766 260 SKDV---PM--DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ----GLD--A-SIVVASALLDMYSKCGQVEIADSMFRS 327 (525)
Q Consensus 260 ~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 327 (525)
...- .+ ...++..+...+...|+++.|...+.+.... +.. + ....+..+...+...|+++.|...++.
T Consensus 519 ~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 598 (903)
T PRK04841 519 QMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARK 598 (903)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3100 01 1122333344455566666666655554332 111 1 122333445556666888877777766
Q ss_pred ccC------C--CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHH-----HHHHHHHcCCCCCcchHHHHHH
Q 048766 328 LCR------K--NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF-----LNVLAACSHTDIPFDKVSEYFE 394 (525)
Q Consensus 328 ~~~------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~~~~~~~a~~~~~ 394 (525)
... + ....+..+...+...|+++.|.+.+++.............+ ...+..+...|+ .+.|.+.+.
T Consensus 599 al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~l~ 677 (903)
T PRK04841 599 GLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD-KEAAANWLR 677 (903)
T ss_pred hHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence 531 1 12234445566777888888888887775421011110001 011233344666 888888876
Q ss_pred HhhhhhCCCCCh----hHHHHHHHHHhccCChHHHHHHHHHh-------CCCCc-hhHHHHHHHHHhcCCChHHHHHHHH
Q 048766 395 SMTKDYGIKPTV----EHCCSMIRLMGQKGEVWRAQRMIREL-------GFGSY-GVVWRALLSASGACSDLDVARISAA 462 (525)
Q Consensus 395 ~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 462 (525)
..... . .... ..+..+..++...|++++|...+++. +...+ ..+...+..++...|+.++|...+.
T Consensus 678 ~~~~~-~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~ 755 (903)
T PRK04841 678 QAPKP-E-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLL 755 (903)
T ss_pred hcCCC-C-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 65431 1 1111 11345677888899999999988875 22222 2345566778889999999999999
Q ss_pred HHHhhcC
Q 048766 463 EVIKLEG 469 (525)
Q Consensus 463 ~~~~~~p 469 (525)
+++++..
T Consensus 756 ~Al~la~ 762 (903)
T PRK04841 756 EALKLAN 762 (903)
T ss_pred HHHHHhC
Confidence 9998763
No 113
>PLN02789 farnesyltranstransferase
Probab=98.83 E-value=3.3e-06 Score=76.37 Aligned_cols=211 Identities=10% Similarity=0.036 Sum_probs=122.8
Q ss_pred chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-CHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCCh--hHHHHH
Q 048766 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG-QVEIADSMFRSLC---RKNLVTWNAMITGYARNGDL--TKVIEL 355 (525)
Q Consensus 282 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~a~~~ 355 (525)
+.++|......+++.+ +.+..++..-..++...| +++++...++.+. +.+..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3344444444444433 223333333333444444 4566666666554 23444555444444444542 566777
Q ss_pred HHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhcc---CCh----HHHHH
Q 048766 356 FEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK---GEV----WRAQR 427 (525)
Q Consensus 356 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~ 427 (525)
++++.+ ..| |..+|.....++...|. ++++++.++++++. . .-+...|+.....+.+. |.. +++++
T Consensus 131 ~~kal~---~dpkNy~AW~~R~w~l~~l~~-~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 131 TRKILS---LDAKNYHAWSHRQWVLRTLGG-WEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHH---hCcccHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 777776 445 45666666666666776 77777777777653 1 22344555555444433 222 34555
Q ss_pred HHHHh-CCCCc-hhHHHHHHHHHhcC----CChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc---------------
Q 048766 428 MIREL-GFGSY-GVVWRALLSASGAC----SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG--------------- 486 (525)
Q Consensus 428 ~~~~~-~~~~~-~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------------- 486 (525)
...++ ...|+ ...|..+...+... +...+|.+.+.+++..+|.++.++..|+++|....
T Consensus 205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T PLN02789 205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAE 284 (320)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 55443 33443 55676666666552 44567888888888888988999999999987642
Q ss_pred ---ChhHHHHHHHHHH
Q 048766 487 ---NWDVASVMRNFMR 499 (525)
Q Consensus 487 ---~~~~A~~~~~~~~ 499 (525)
..++|.++++.+.
T Consensus 285 ~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 285 ELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccHHHHHHHHHHHH
Confidence 3467888888873
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.83 E-value=4.5e-07 Score=75.75 Aligned_cols=151 Identities=13% Similarity=0.053 Sum_probs=70.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHh
Q 048766 339 MITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417 (525)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 417 (525)
+-..+...|+-+....+...... ..| |..............|+ +..|...+++... .-++|...|+.+.-+|.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~---~~~~d~~ll~~~gk~~~~~g~-~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI---AYPKDRELLAAQGKNQIRNGN-FGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc---cCcccHHHHHHHHHHHHHhcc-hHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 33444444444444444444333 122 22233334444444554 5555555555443 22334455555555555
Q ss_pred ccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHH
Q 048766 418 QKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (525)
+.|++++|..-|.+. ... .++...+.+...+.-.||++.|..++..+....+.+..+-..|+.+....|+.++|..+.
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 555555555555443 111 223344444444455555555555555555544445555555555555555555554443
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=2.1e-06 Score=81.84 Aligned_cols=193 Identities=15% Similarity=0.108 Sum_probs=103.1
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHH
Q 048766 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378 (525)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 378 (525)
+|-...-..+...+...|-...|..+|+++ ..|...+..|...|+..+|..+..+..+ .+|+..-|..+...
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDV 466 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhh
Confidence 444455556666677777777777777655 3555666677777777777777766666 35666666666655
Q ss_pred HcCCCCCcchHHHHHHHhhhhh-------------------------CCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 379 CSHTDIPFDKVSEYFESMTKDY-------------------------GIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~-------------------------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
.....- +++|.++.+....+. .+.| ...+|..++-+..+.+++..|.+.|...
T Consensus 467 ~~d~s~-yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 467 LHDPSL-YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred ccChHH-HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 555444 555555554433210 1111 2334444444444455555555544443
Q ss_pred -CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 433 -GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 433 -~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
...|+ ...|+.+..+|.+.|+-.+|...++++++.+-++...|.+...+...-|.|++|++.+.++.+
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 22333 344555555555555555555555555555444455555555555555555555555554443
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.72 E-value=2.3e-06 Score=85.39 Aligned_cols=138 Identities=10% Similarity=-0.005 Sum_probs=96.8
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHH
Q 048766 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHC 409 (525)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 409 (525)
+...+-.|.....+.|++++|..+++...+ ..|+ ......+...+.+.++ +++|...+++... ..| +....
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~-~eeA~~~~~~~l~---~~p~~~~~~ 157 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQG-IEAGRAEIELYFS---GGSSSAREI 157 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHhh---cCCCCHHHH
Confidence 466677777777778888888888888877 6775 4555566677777777 8888888877764 244 45566
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
..+..++...|++++|..+|+++ ...|+ ...+..+..++...|+.++|...|+++++...+-...|.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 67777777888888888888876 22333 567777777777788888888888888776643334433
No 117
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.70 E-value=2.1e-07 Score=72.40 Aligned_cols=98 Identities=12% Similarity=-0.019 Sum_probs=86.4
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
+......+...+...|++++|.++|+-+ ...| +...|..|+..+...|++++|+..|.++..++|++|.++..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445566777788999999999999987 4444 4677889999999999999999999999999999999999999999
Q ss_pred hhccChhHHHHHHHHHHHcC
Q 048766 483 TSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~ 502 (525)
...|+.+.|++.|+......
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999887765
No 118
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=1e-05 Score=67.31 Aligned_cols=171 Identities=13% Similarity=0.097 Sum_probs=123.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhccCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHc
Q 048766 304 VASALLDMYSKCGQVEIADSMFRSLCRK---NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380 (525)
Q Consensus 304 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 380 (525)
++..++-+...+|+.+.|...++.+... +...-..-...+-..|++++|+++|+...+.. +.|..++..-+...-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHH
Confidence 3455566667778888888888877522 21111111223445789999999999999843 335677776677777
Q ss_pred CCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhc---CCChH
Q 048766 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGA---CSDLD 455 (525)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~---~~~~~ 455 (525)
..|+ .-+|++-+....+ .+..|...|..+.+.|...|++++|.-.++++ -..| ++..+..+...+.- ..+..
T Consensus 132 a~GK-~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 132 AQGK-NLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HcCC-cHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 7787 6688877777766 66889999999999999999999999999997 3334 45555666665543 34788
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHH
Q 048766 456 VARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 456 ~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
-|.++|.+++++.|.+...+..+.
T Consensus 209 ~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 209 LARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHH
Confidence 999999999999997666655443
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.69 E-value=1.3e-06 Score=76.80 Aligned_cols=184 Identities=11% Similarity=-0.045 Sum_probs=130.7
Q ss_pred CCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCC-c-hHHHHHHHHHHHHcCCCHHHHHHHHHhccC--C-CHh---H
Q 048766 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD-A-SIVVASALLDMYSKCGQVEIADSMFRSLCR--K-NLV---T 335 (525)
Q Consensus 264 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~---~ 335 (525)
......+..+...+...|+++.|...++.+.+.... + ....+..+..++.+.|+++.|...++.+.+ | +.. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667778888899999999999999999876522 1 234667788999999999999999999863 2 222 4
Q ss_pred HHHHHHHHHhc--------CChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChh
Q 048766 336 WNAMITGYARN--------GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407 (525)
Q Consensus 336 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 407 (525)
+..+..++... |+++.|.+.++++.. ..|+.......+... ..+... -..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~a~~~~--------------~~~~~~-----~~~ 167 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR---RYPNSEYAPDAKKRM--------------DYLRNR-----LAG 167 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH---HCCCChhHHHHHHHH--------------HHHHHH-----HHH
Confidence 55566666654 788999999999998 567643221111111 111000 001
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh----CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL----GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
....+...|.+.|++.+|+..+++. +..| ....+..++.++.+.|++++|..+++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1235677888999999999999987 2223 356788899999999999999999888877665
No 120
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.68 E-value=3.5e-07 Score=72.44 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
......++..+...|++++|.+.++.+ .. +.+...+..+...+...|++++|...++++++.+|+++..+..++.++.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344566677777778888888887776 32 3345667777777777888888888888888888888888888888888
Q ss_pred hccChhHHHHHHHHHHHcCC
Q 048766 484 SHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~ 503 (525)
..|++++|...+++..+..+
T Consensus 97 ~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 97 ALGEPESALKALDLAIEICG 116 (135)
T ss_pred HcCCHHHHHHHHHHHHHhcc
Confidence 88888888888877777654
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=8.6e-07 Score=84.35 Aligned_cols=225 Identities=13% Similarity=0.077 Sum_probs=157.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCH
Q 048766 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318 (525)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (525)
...+...|-...|+.+|+ ....+..++.+|+..|+..+|..+..+..+ -+|++..|..+.+......-+
T Consensus 405 aell~slGitksAl~I~E---------rlemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFE---------RLEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHcchHHHHHHHHH---------hHHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHH
Confidence 334444444555544443 334555666666667766666666666655 356666676666666666666
Q ss_pred HHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhh
Q 048766 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMT 397 (525)
Q Consensus 319 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 397 (525)
++|.++.+....+ +-..+.....+.++++++.+.|+.-.+ +.| ...+|-.+-.+..+.++ ++.|.+.|....
T Consensus 474 EkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek-~q~av~aF~rcv 546 (777)
T KOG1128|consen 474 EKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEK-EQAAVKAFHRCV 546 (777)
T ss_pred HHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhh-hHHHHHHHHHHh
Confidence 7777766655422 111112222346889999999998887 555 46778777778888888 999999999887
Q ss_pred hhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc--CCCh
Q 048766 398 KDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLE--GDSD 472 (525)
Q Consensus 398 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~ 472 (525)
...| +...|+.+..+|.+.|+-.+|...+.+. + ...+...|...+......|.+++|++++.+++.+. ..++
T Consensus 547 ---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~ 623 (777)
T KOG1128|consen 547 ---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDD 623 (777)
T ss_pred ---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccc
Confidence 4466 5788999999999999999999999997 2 24456788888888899999999999999999865 2355
Q ss_pred hHHHHHHHHHhh
Q 048766 473 YVYVMLCNLYTS 484 (525)
Q Consensus 473 ~~~~~l~~~~~~ 484 (525)
.+...+.....+
T Consensus 624 ~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 624 EVLLIIVRTVLE 635 (777)
T ss_pred hhhHHHHHHHHh
Confidence 555555544433
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=2.2e-05 Score=71.74 Aligned_cols=117 Identities=9% Similarity=-0.007 Sum_probs=82.9
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDV 456 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ 456 (525)
+...+. +++|+..++.+.+ ..+.|+..+....+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|++.+
T Consensus 316 ~~~~~~-~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQ-YDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcc-cchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 334555 7788888887775 33445666666777788888888888888776 44555 5566777778888888888
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 457 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
|+..+.+.+..+|+++..|..|+.+|...|+..+|.....+.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 888888888888888888888888777777665555444433
No 123
>PLN02789 farnesyltranstransferase
Probab=98.67 E-value=3.1e-06 Score=76.55 Aligned_cols=188 Identities=10% Similarity=0.034 Sum_probs=138.2
Q ss_pred HHHHcCCCHHHHHHHHHhccCC---CHhHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCC
Q 048766 310 DMYSKCGQVEIADSMFRSLCRK---NLVTWNAMITGYARNG-DLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDI 384 (525)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~ 384 (525)
..+...+..++|.....++... +..+|+.....+...| ++++++..++++.+ ..| +..+|+.-...+.+.+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~---~npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE---DNPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH---HCCcchHHhHHHHHHHHHcCc
Confidence 3445567888899888888733 4456776666777777 67999999999998 455 44556655545555554
Q ss_pred C-cchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcC---CC----
Q 048766 385 P-FDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGAC---SD---- 453 (525)
Q Consensus 385 ~-~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~---~~---- 453 (525)
. .+++..+++++.+. .| +...|.....++.+.|+++++++.++++ .. ..+..+|+.....+.+. |.
T Consensus 122 ~~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 122 DAANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 1 36788889888753 44 6788888899999999999999999997 33 34466777666655443 22
Q ss_pred hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc----cChhHHHHHHHHHHHcCC
Q 048766 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSH----GNWDVASVMRNFMRERGL 503 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~ 503 (525)
.++++....++++.+|+|..+|..+..++... ++..+|.+...+..+.++
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 35788888999999999999999999999883 455678888887766443
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.66 E-value=4.8e-06 Score=69.79 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=99.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCC
Q 048766 306 SALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382 (525)
Q Consensus 306 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 382 (525)
..+-..+...|+-+....+..... ..|....+..+....+.|++..|+..+++.... -+||...++.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhHHHHHHHHc
Confidence 445556666666666666665543 334445555677777777777777777777763 244567777777777777
Q ss_pred CCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHH
Q 048766 383 DIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARI 459 (525)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~ 459 (525)
|+ .+.|..-|.+..+. .| ++..++.+.-.|.-.|+++.|..++... .-..+..+-..+..+....|++++|..
T Consensus 148 Gr-~~~Ar~ay~qAl~L---~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 148 GR-FDEARRAYRQALEL---APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred cC-hhHHHHHHHHHHHh---ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 77 77777777777643 33 4555677777777777777777777765 222355666667777777777777776
Q ss_pred HHHHHH
Q 048766 460 SAAEVI 465 (525)
Q Consensus 460 ~~~~~~ 465 (525)
+..+-+
T Consensus 224 i~~~e~ 229 (257)
T COG5010 224 IAVQEL 229 (257)
T ss_pred hccccc
Confidence 655443
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.63 E-value=1.5e-05 Score=80.59 Aligned_cols=155 Identities=13% Similarity=0.154 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHH
Q 048766 302 IVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378 (525)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 378 (525)
..++..+..+|-+.|+.++|.++++++. +.|+.+.|.+.-.|... +.++|++++.+....
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------- 178 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------- 178 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------
Confidence 3355556666666666666666666665 33455666666666666 666666666665541
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 458 (525)
+...++ +..+.++|.++... .+.+...+..+.+..... .+...-..++..+...|...+++++++
T Consensus 179 ~i~~kq-~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~------------~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 179 FIKKKQ-YVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGH------------REFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred HHhhhc-chHHHHHHHHHHhc--CcccchHHHHHHHHHHhh------------hccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 333344 66666666666542 111222222222211111 122233445555666777788899999
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHhhccChhH
Q 048766 459 ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 459 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
.+++.+++.+|.|..+...++.+|. +.|.+
T Consensus 244 ~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 244 YILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 9999999999998888888888887 44444
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=9.4e-05 Score=62.21 Aligned_cols=248 Identities=9% Similarity=0.026 Sum_probs=136.8
Q ss_pred hcCChHHHHHHHhcCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHH-HH
Q 048766 213 QFGDIEDAIMILSSMPS--PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM-LI 289 (525)
Q Consensus 213 ~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~ 289 (525)
-.|.+..++..-..... .+...-.-+.++|...|.+..... ++.... .|....+..+.......++.+.-. .+
T Consensus 20 Y~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l 95 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILASL 95 (299)
T ss_pred HhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHHHH
Confidence 34555555444333321 122223334455666665543332 222221 334444444444444444443333 33
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH
Q 048766 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369 (525)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 369 (525)
.+.+.......+......-...|+..|++++|.+.......-.....+ ...+.+..+.+-|.+.+++|.+ + .+.
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---i-ded 169 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ---I-DED 169 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---c-chH
Confidence 444444444444444444556677888888888877763322322222 3445566777888888888876 2 345
Q ss_pred hHHHHHHHHHcC----CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHH
Q 048766 370 VTFLNVLAACSH----TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRA 443 (525)
Q Consensus 370 ~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~ 443 (525)
.|.+-|..++.+ .+. ...|.-+|+++.+ +..|++.+.+..+.++...|++++|..++++. ....++.++..
T Consensus 170 ~tLtQLA~awv~la~ggek-~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEK-IQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHhccchh-hhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 566656555432 333 7777778888865 46777777777777777778888888777776 33445566655
Q ss_pred HHHHHhcCCCh-HHHHHHHHHHHhhcCCChh
Q 048766 444 LLSASGACSDL-DVARISAAEVIKLEGDSDY 473 (525)
Q Consensus 444 l~~~~~~~~~~-~~A~~~~~~~~~~~p~~~~ 473 (525)
++..-...|.. +.-.+.+.+.....|.++.
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 55554555543 4445556666666665543
No 127
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=5e-06 Score=69.92 Aligned_cols=153 Identities=10% Similarity=0.066 Sum_probs=111.6
Q ss_pred HHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcch
Q 048766 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDK 388 (525)
Q Consensus 309 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 388 (525)
+-.|...|+++.+..-.+.+..+. ..+...++.++++..+++..+.. +.|...|..+...+...|+ +++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~-~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRND-YDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCC-HHH
Confidence 446777888777655443332221 01223567788888888887732 3467788888888889998 999
Q ss_pred HHHHHHHhhhhhCCCC-ChhHHHHHHHH-HhccCC--hHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHH
Q 048766 389 VSEYFESMTKDYGIKP-TVEHCCSMIRL-MGQKGE--VWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAA 462 (525)
Q Consensus 389 a~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 462 (525)
|...|++..+ +.| +...+..++.+ +...|+ .++|.+++++. ...| +...+..++..+.+.|++++|+..++
T Consensus 92 A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998885 345 67778888886 467777 58999999987 4444 46778888889999999999999999
Q ss_pred HHHhhcCCChhHH
Q 048766 463 EVIKLEGDSDYVY 475 (525)
Q Consensus 463 ~~~~~~p~~~~~~ 475 (525)
++++..|.+..-+
T Consensus 169 ~aL~l~~~~~~r~ 181 (198)
T PRK10370 169 KVLDLNSPRVNRT 181 (198)
T ss_pred HHHhhCCCCccHH
Confidence 9999987555443
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.62 E-value=1e-05 Score=80.84 Aligned_cols=129 Identities=9% Similarity=0.130 Sum_probs=83.7
Q ss_pred CCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc--CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHH
Q 048766 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLC--RK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFL 373 (525)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 373 (525)
.+.+...+..|..+..+.|.+++|+.+++.+. .| +......++..+.+.+++++|+..+++... ..|+ .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 34556666667777777777777777777765 23 344556666677777777777777777776 4554 34444
Q ss_pred HHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 374 ~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
.+..++...|. +++|..+|+++... .+-+...+..+..++.+.|+.++|...|++.
T Consensus 159 ~~a~~l~~~g~-~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 159 LEAKSWDEIGQ-SEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHhcc-hHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55556666676 77777777777642 2233566667777777777777777777765
No 129
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.61 E-value=0.00049 Score=63.92 Aligned_cols=394 Identities=11% Similarity=0.105 Sum_probs=227.5
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHH
Q 048766 67 PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146 (525)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 146 (525)
-|+.+|+.||+-+..+ .++++.+.++++... .+-....|..-|+.-....+++..+.+|.+-...- .+...|...+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 4788999999987655 999999999999863 23346778888999999999999999999887764 4466666666
Q ss_pred HHHHh-cCCHHHH----HHHHhhccC------CChhhHHHHHHH---------HHhCCChHHHHHHHhcC-CCC------
Q 048766 147 DMYGK-CGSVEDA----IGVFGEMID------KDIISWNSVIAA---------SARNGNLELAFGFLHRL-PNP------ 199 (525)
Q Consensus 147 ~~~~~-~g~~~~a----~~~~~~~~~------~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~-~~~------ 199 (525)
..-.+ .|+...+ .+.|+-... .+-..|+..+.- +..+.+++...++|+++ ..|
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 54333 2333332 222222211 123345554433 33344567777888887 333
Q ss_pred ---CcchHHHHHHHH-------HhcCChHHHHHHHhcCCC---------C---Ccc---------cHHHHHHHHHhcCC-
Q 048766 200 ---DTISYNEVINGI-------AQFGDIEDAIMILSSMPS---------P---NSS---------SWNSILTGYVNRNR- 247 (525)
Q Consensus 200 ---~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~---------~---~~~---------~~~~l~~~~~~~~~- 247 (525)
|-..|..=++.. -+...+..|.++++++.. | ... .|-.+|.--...+-
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 111221112111 123345566666665431 1 111 13222221111110
Q ss_pred -------hhHHHHHHHHHh-hCCCCCCHHHH-HHHH----HHhccccc-------hHHHHHHHHHHHHhCCCchHHHHHH
Q 048766 248 -------VPEALHLFGEMQ-SKDVPMDEYTF-STML----SGIAGLSA-------LTWGMLIHSCVIKQGLDASIVVASA 307 (525)
Q Consensus 248 -------~~~a~~~~~~m~-~~~~~~~~~~~-~~l~----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~ 307 (525)
.....-.+++.+ -.+..|+..-. ...+ ..+...|+ .+++..+++.....-...+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111122211 11222222110 0000 01111222 3455555655554433334444544
Q ss_pred HHHHHHcCC---CHHHHHHHHHhccC----CCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHH
Q 048766 308 LLDMYSKCG---QVEIADSMFRSLCR----KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAAC 379 (525)
Q Consensus 308 l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 379 (525)
+...-...- ..+....+++++.. .-..+|-.++..-.+..-...|..+|.++.+.+ ..+ ....+++++..+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~-r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK-RTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc-CCcchhhHHHHHHHHH
Confidence 443222222 24555556665541 123467778888888888889999999998887 666 677777888877
Q ss_pred cCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh---CCCCc--hhHHHHHHHHHhcCCCh
Q 048766 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL---GFGSY--GVVWRALLSASGACSDL 454 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~--~~~~~~l~~~~~~~~~~ 454 (525)
+... .+-|.++|+.-.+. +..++......++-+...++-..|..+|++. ...++ ...|..++.--...||.
T Consensus 413 cskD--~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 413 CSKD--KETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred hcCC--hhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 7654 58889999877764 3344555566777888888888999999887 22333 57888888888888999
Q ss_pred HHHHHHHHHHHhhcC
Q 048766 455 DVARISAAEVIKLEG 469 (525)
Q Consensus 455 ~~A~~~~~~~~~~~p 469 (525)
..+.++-++....-|
T Consensus 489 ~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHHHhcc
Confidence 988888888776655
No 130
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=7e-08 Score=54.32 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=28.8
Q ss_pred hCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCC
Q 048766 32 SGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65 (525)
Q Consensus 32 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 65 (525)
.|+.||..+|+.||..||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888874
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=9.6e-06 Score=67.42 Aligned_cols=165 Identities=15% Similarity=0.194 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHH-HHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL-AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMI 413 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 413 (525)
.|..++-+....|+.+.|...++++..+ + |.+.-...+- .-+-..|. +++|+++++.+.++ . +.|..++..-+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~--f-p~S~RV~~lkam~lEa~~~-~~~A~e~y~~lL~d-d-pt~~v~~KRKl 127 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR--F-PGSKRVGKLKAMLLEATGN-YKEAIEYYESLLED-D-PTDTVIRKRKL 127 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh--C-CCChhHHHHHHHHHHHhhc-hhhHHHHHHHHhcc-C-cchhHHHHHHH
Confidence 4555666667789999999999998884 3 6543333332 23344566 99999999999975 2 33566676667
Q ss_pred HHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc---Ch
Q 048766 414 RLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG---NW 488 (525)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~ 488 (525)
-.....|+.-+|++-+.+. .+..|...|..+...|...|++++|.-++++++-..|-++..+..++..+.-.| ++
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 7777889888999988886 777899999999999999999999999999999999999999999999876655 56
Q ss_pred hHHHHHHHHHHHcCCcc
Q 048766 489 DVASVMRNFMRERGLRK 505 (525)
Q Consensus 489 ~~A~~~~~~~~~~~~~~ 505 (525)
.-|+++|.+..+.....
T Consensus 208 ~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 208 ELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHHHHHhChHh
Confidence 67889999988876643
No 132
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.57 E-value=3e-05 Score=79.42 Aligned_cols=229 Identities=13% Similarity=0.149 Sum_probs=149.7
Q ss_pred CHHHHHHHHHHhccccchHHHHHHHHHHHHh-CCC---chHHHHHHHHHHHHcCCCHHHHHHHHHhccCC-C-HhHHHHH
Q 048766 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLD---ASIVVASALLDMYSKCGQVEIADSMFRSLCRK-N-LVTWNAM 339 (525)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~l 339 (525)
+...|...|......++.++|..+.++++.. ++. --..+|.++++.-..-|.-+...++|+++.+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3344555555556666666666666666543 111 12345666666666667777778888887743 2 3467777
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhcc
Q 048766 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419 (525)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 419 (525)
...|.+.+.+++|.++++.|.+. ..-....|...+..+.+.++ -+.|..++.++.+...-.-........+.+-.+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK--F~q~~~vW~~y~~fLl~~ne-~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK--FGQTRKVWIMYADFLLRQNE-AEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH--hcchhhHHHHHHHHHhcccH-HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 88888888888888888888875 34456777788888888777 7888888888775311111344455556666788
Q ss_pred CChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc--CCChhH-HHHHHHHHhhccChhHHHHH
Q 048766 420 GEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE--GDSDYV-YVMLCNLYTSHGNWDVASVM 494 (525)
Q Consensus 420 g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~-~~~l~~~~~~~g~~~~A~~~ 494 (525)
|+.+.+..+|+.. ..+.....|..++..-.++|+.+.+..+|++++.+. |...-. |..++..-...|+-+.+..+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 8888888888876 333346778888888888888888888888888876 433333 44444444455665554444
Q ss_pred HHH
Q 048766 495 RNF 497 (525)
Q Consensus 495 ~~~ 497 (525)
=.+
T Consensus 1694 Kar 1696 (1710)
T KOG1070|consen 1694 KAR 1696 (1710)
T ss_pred HHH
Confidence 333
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=2.2e-05 Score=65.82 Aligned_cols=245 Identities=10% Similarity=0.036 Sum_probs=157.4
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCH
Q 048766 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318 (525)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (525)
++-+.-.|++..++..-....... -+...-..+.++|...|....... ++.... .+....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 344555677877776655544332 333344444556666665433322 111222 44445555555544444554
Q ss_pred HHHH-HHHHhccCC----CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHH
Q 048766 319 EIAD-SMFRSLCRK----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393 (525)
Q Consensus 319 ~~A~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~ 393 (525)
+.-. ++.+.+..+ +......-...|+..|++++|++...... +......=...+.+..+ .+-|.+.+
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r-~d~A~~~l 160 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQILLKMHR-FDLAEKEL 160 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4433 333333322 22222333456888999999999988622 12222233344556666 89999999
Q ss_pred HHhhhhhCCCCChhHHHHHHHHHh----ccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 048766 394 ESMTKDYGIKPTVEHCCSMIRLMG----QKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
++|.. +. +..+.+.|..++. ..+...+|.-+|+++ +..|.+.+.+..+..+...|++++|..+++.++..
T Consensus 161 k~mq~---id-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 161 KKMQQ---ID-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHc---cc-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99974 23 3455666666654 456799999999999 46788888888889999999999999999999999
Q ss_pred cCCChhHHHHHHHHHhhccChhHHH-HHHHHHHHc
Q 048766 468 EGDSDYVYVMLCNLYTSHGNWDVAS-VMRNFMRER 501 (525)
Q Consensus 468 ~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 501 (525)
+|++|.++.+++.+-...|.-.++. +.+.++...
T Consensus 237 d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9999999999999988888876655 445555444
No 134
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.4e-07 Score=53.08 Aligned_cols=32 Identities=47% Similarity=0.649 Sum_probs=18.9
Q ss_pred ccCCCcchhhHHHHHHHhcCCHHHHHHHHhhc
Q 048766 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165 (525)
Q Consensus 134 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 165 (525)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45556666666666666666666666655554
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=3.7e-05 Score=77.77 Aligned_cols=81 Identities=12% Similarity=0.132 Sum_probs=46.5
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcC
Q 048766 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347 (525)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 347 (525)
..+..+..+|.+.|+.+++..+++++++.. +.++.+.+.+...|... ++++|.+++.+.. ..+...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhh
Confidence 345555555556666666666666665555 55556666666666666 6666666655442 2244455
Q ss_pred ChhHHHHHHHHHhh
Q 048766 348 DLTKVIELFEQLKT 361 (525)
Q Consensus 348 ~~~~a~~~~~~~~~ 361 (525)
++..+.++|.++..
T Consensus 184 q~~~~~e~W~k~~~ 197 (906)
T PRK14720 184 QYVGIEEIWSKLVH 197 (906)
T ss_pred cchHHHHHHHHHHh
Confidence 56666666666655
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.49 E-value=3.1e-06 Score=78.06 Aligned_cols=123 Identities=16% Similarity=0.121 Sum_probs=99.5
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHH
Q 048766 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSAS 448 (525)
Q Consensus 371 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~ 448 (525)
....++..+...+. ++.|+++++++.+. .|+ ....+++.+...++-.+|++++++. ..+.+...+......+
T Consensus 171 Lv~~Ll~~l~~t~~-~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQR-YDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhccc-HHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34455666666777 88899988888754 354 4455778888888888888888876 3333566666677788
Q ss_pred hcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHH
Q 048766 449 GACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 449 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
...++++.|+.+.+++.+..|++..+|..|+.+|...|++++|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 899999999999999999999999999999999999999999999998764
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=7.4e-05 Score=68.44 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=60.5
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHH-HHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhcc
Q 048766 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN-VLAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQK 419 (525)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 419 (525)
.+...|++++|+..++.+.. ..|+...|.. ....+...++ .++|.+.++++.. ..|+ ......+..+|.+.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk-~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA---AQPDNPYYLELAGDILLEANK-AKEAIERLKKALA---LDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhc
Confidence 34445566666666666555 3454433333 3334455555 6666666666553 2443 44445555666666
Q ss_pred CChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHH
Q 048766 420 GEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISA 461 (525)
Q Consensus 420 g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 461 (525)
|++.+|+.+++.. ..+.++..|..|..+|...|+..++....
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 6666666666654 33334555666666666666655554443
No 138
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.48 E-value=4.8e-07 Score=64.44 Aligned_cols=79 Identities=13% Similarity=0.051 Sum_probs=63.8
Q ss_pred cCChHHHHHHHHHh----CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHH
Q 048766 419 KGEVWRAQRMIREL----GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494 (525)
Q Consensus 419 ~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (525)
.|++++|+.+++++ +..++...+..++.++.+.|++++|+.++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57888899888887 2223556677789999999999999999999 778887878888889999999999999999
Q ss_pred HHHH
Q 048766 495 RNFM 498 (525)
Q Consensus 495 ~~~~ 498 (525)
+++.
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8763
No 139
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.48 E-value=6.4e-07 Score=61.12 Aligned_cols=66 Identities=17% Similarity=0.089 Sum_probs=60.8
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc-ChhHHHHHHHHHHHcC
Q 048766 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG-NWDVASVMRNFMRERG 502 (525)
Q Consensus 437 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 502 (525)
++..|..++..+...|++++|+..|+++++.+|+++.++..++.++...| ++++|++.+++..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45678889999999999999999999999999999999999999999999 7999999999987754
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.46 E-value=5e-06 Score=65.74 Aligned_cols=115 Identities=9% Similarity=-0.034 Sum_probs=90.5
Q ss_pred HHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-
Q 048766 355 LFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL- 432 (525)
Q Consensus 355 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 432 (525)
.++++.. ..|+ ......+...+...|+ +++|.+.++.+... .+.++..+..++..+.+.|++++|...+++.
T Consensus 5 ~~~~~l~---~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 5 TLKDLLG---LDSEQLEQIYALAYNLYQQGR-YDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHc---CChhhHHHHHHHHHHHHHccc-HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666 5564 3455667777888888 99999999988753 2446788888999999999999999999887
Q ss_pred CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHH
Q 048766 433 GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475 (525)
Q Consensus 433 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 475 (525)
...| +...+..+...+...|++++|+..++++++..|++....
T Consensus 79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 3334 467778888899999999999999999999999766543
No 141
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.43 E-value=5.4e-06 Score=63.90 Aligned_cols=98 Identities=15% Similarity=-0.054 Sum_probs=72.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC---hhHHHHH
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGDS---DYVYVML 478 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l 478 (525)
.++..++..+.+.|++++|.+.++++ ...|+ ...+..++..+.+.|++++|+..+++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34566677777888888888888776 22232 3455667778888888888888888888877764 4567788
Q ss_pred HHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 479 CNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
+.++.+.|++++|...++++.+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 88888888888888888888777543
No 142
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.41 E-value=1e-06 Score=59.23 Aligned_cols=60 Identities=20% Similarity=0.160 Sum_probs=50.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 444 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
++..+...|++++|+..|+++++..|+++.++..++.++...|++++|..+|+++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456677888999999999999998898888899999999999999999988888877654
No 143
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=2.1e-06 Score=73.39 Aligned_cols=107 Identities=11% Similarity=0.052 Sum_probs=83.6
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLD 455 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~ 455 (525)
..+.++ +.+|+..|.+++ .+.| |+..|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|+++
T Consensus 91 ~m~~~~-Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKD-YQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhh-HHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 345566 888888888887 4455 4566666777888888888888888775 55565 568899999999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHhhccChh
Q 048766 456 VARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD 489 (525)
Q Consensus 456 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 489 (525)
+|++.|+++++++|++......|-.+-.+.+.-+
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999877777777665555444
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.39 E-value=9.2e-06 Score=64.87 Aligned_cols=124 Identities=15% Similarity=0.133 Sum_probs=80.3
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCch----hHHHHHH
Q 048766 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYG----VVWRALL 445 (525)
Q Consensus 372 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~ 445 (525)
|..++..+. .++ ...+.+.++.+.+.++-.+ .......+...+...|++++|...|+.+ ...|++ .....+.
T Consensus 15 y~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQALQ-AGD-PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-CCC-HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 444444443 455 6777777777776422111 1233444566777788888888888876 222332 2445567
Q ss_pred HHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 446 SASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
..+...|++++|+..++.. ...|..+..+...+.+|.+.|++++|+..|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7778888888888888663 233445677778888888888888888888754
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.37 E-value=4.3e-06 Score=61.48 Aligned_cols=95 Identities=15% Similarity=0.066 Sum_probs=80.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
.+..++..+...|++++|...+++. ...|+ ...+..++..+...|++++|...++++.+..|.++..+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 3556777888899999999999986 33343 466777888888899999999999999999998888999999999999
Q ss_pred cChhHHHHHHHHHHHcC
Q 048766 486 GNWDVASVMRNFMRERG 502 (525)
Q Consensus 486 g~~~~A~~~~~~~~~~~ 502 (525)
|++++|...+.+..+.+
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 99999999998887654
No 146
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.31 E-value=0.00013 Score=57.76 Aligned_cols=154 Identities=8% Similarity=0.007 Sum_probs=118.8
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCC
Q 048766 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGE 421 (525)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 421 (525)
+..+.=|++...+-..+-.+ ..|+...-..+..++...|+ ..+|...|++...- -+..|+.....+.++....++
T Consensus 65 a~~q~ldP~R~~Rea~~~~~---~ApTvqnr~rLa~al~elGr-~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 65 ALQQKLDPERHLREATEELA---IAPTVQNRYRLANALAELGR-YHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh---hchhHHHHHHHHHHHHHhhh-hhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhcc
Confidence 33444455555444444444 56777777788899999999 99999999998763 345578888889999999999
Q ss_pred hHHHHHHHHHh-CCCCc---hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHH
Q 048766 422 VWRAQRMIREL-GFGSY---GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 422 ~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (525)
+.+|...++.+ ..+|. +.....+...+...|.+..|+..|+.++...| .+......+..+.++|+.++|..-+..
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 99999999987 22232 34455678889999999999999999999999 788888899999999998888776665
Q ss_pred HHHc
Q 048766 498 MRER 501 (525)
Q Consensus 498 ~~~~ 501 (525)
+.+.
T Consensus 219 v~d~ 222 (251)
T COG4700 219 VVDT 222 (251)
T ss_pred HHHH
Confidence 5543
No 147
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.1e-05 Score=69.49 Aligned_cols=111 Identities=14% Similarity=0.016 Sum_probs=93.5
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhc---CCChHHHHHHHHHHHhhcCCChhHHHH
Q 048766 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGA---CSDLDVARISAAEVIKLEGDSDYVYVM 477 (525)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~ 477 (525)
+-|...|..|+..|.+.|+...|...|... ... +++..+..+..++.. ..+..++..+++++++.+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 457899999999999999999999999987 223 345566666665533 336889999999999999999999999
Q ss_pred HHHHHhhccChhHHHHHHHHHHHcCCccCCcccEEE
Q 048766 478 LCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513 (525)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 513 (525)
|+..+...|++.+|...|+.|.+.....+|..+.++
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 999999999999999999999999988777766543
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.26 E-value=1.2e-05 Score=74.50 Aligned_cols=107 Identities=8% Similarity=-0.005 Sum_probs=87.5
Q ss_pred HHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcC
Q 048766 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGAC 451 (525)
Q Consensus 375 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 451 (525)
-...+...|+ +++|+++|+++.+. .| +...|..++.+|.+.|++++|+..++++ ...| +...+..++.+|...
T Consensus 8 ~a~~a~~~~~-~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDD-FALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 3455667787 99999999999853 44 5778888899999999999999999987 4444 466788888999999
Q ss_pred CChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 452 SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 452 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
|++++|+..|+++++++|+++.....+..+..+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988877766654443
No 149
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.24 E-value=3.6e-05 Score=71.09 Aligned_cols=128 Identities=13% Similarity=0.086 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHH
Q 048766 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAAC 379 (525)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 379 (525)
+......|+..+...++++.|..+++++.+.++.....++..+...++..+|++++.+..+ ..| +...+..-...|
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~---~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK---ENPQDSELLNLQAEFL 244 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 3445556777788889999999999999877777777788888888999999999999987 345 556666666678
Q ss_pred cCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHhCCC
Q 048766 380 SHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (525)
...++ ++.|.++.+++.+ ..|+ ..+|..|+.+|...|++++|+..++.++..
T Consensus 245 l~k~~-~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 245 LSKKK-YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HhcCC-HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 88888 9999999999984 4664 669999999999999999999999987533
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.22 E-value=5.6e-05 Score=60.33 Aligned_cols=124 Identities=19% Similarity=0.179 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH----hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC--hhHH
Q 048766 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS----VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT--VEHC 409 (525)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 409 (525)
|..++..+ ..++...+...++.+.+.. |+. .....+...+...|+ +++|...|+.+... .-.|. ....
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~---~~s~ya~~A~l~lA~~~~~~g~-~~~A~~~l~~~~~~-~~d~~l~~~a~ 88 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY---PSSPYAALAALQLAKAAYEQGD-YDEAKAALEKALAN-APDPELKPLAR 88 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhh-CCCHHHHHHHH
Confidence 33444444 3677777777777777743 322 333345566777777 88888888887764 22222 2234
Q ss_pred HHHHHHHhccCChHHHHHHHHHhC-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 410 CSMIRLMGQKGEVWRAQRMIRELG-FGSYGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
..|...+...|++++|+..++... ....+..+...+..+...|++++|...|++++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 456777778888888888887752 22334556667777888888888888887763
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.22 E-value=2.3e-05 Score=64.69 Aligned_cols=98 Identities=11% Similarity=-0.013 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
...+..++..+...|++++|...+++. ...|+ ...+..++..+.+.|++++|+..++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445677788888889999999998876 22222 3577888888999999999999999999999999999999999
Q ss_pred HHhhccC--------------hhHHHHHHHHHHHcCC
Q 048766 481 LYTSHGN--------------WDVASVMRNFMRERGL 503 (525)
Q Consensus 481 ~~~~~g~--------------~~~A~~~~~~~~~~~~ 503 (525)
++...|+ +++|.+++++..+.++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 9988777 4666677666665543
No 152
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=5.4e-05 Score=67.59 Aligned_cols=167 Identities=13% Similarity=0.029 Sum_probs=109.4
Q ss_pred hHHHHHH-HHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHH-HHcCCCCCcchHHHHHHHhhhhhCCCCChhHHH-
Q 048766 334 VTWNAMI-TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA-ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC- 410 (525)
Q Consensus 334 ~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 410 (525)
.+|..+- ..+.-.|++++|..+--...+ +.++..--..+-. .+...++ .+.+...|++.. .+.|+...-.
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilk---ld~~n~~al~vrg~~~yy~~~-~~ka~~hf~qal---~ldpdh~~sk~ 241 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILK---LDATNAEALYVRGLCLYYNDN-ADKAINHFQQAL---RLDPDHQKSKS 241 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHh---cccchhHHHHhcccccccccc-hHHHHHHHhhhh---ccChhhhhHHh
Confidence 3444332 445667888888887777766 4444322222222 2233444 788888887766 4455432221
Q ss_pred ------------HHHHHHhccCChHHHHHHHHHh-CCCCc-----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 411 ------------SMIRLMGQKGEVWRAQRMIREL-GFGSY-----GVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 411 ------------~l~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
.=+.-..+.|++..|.+.+.+. .+.|+ ...|.....+..+.|+..+|+.--.++++++|.-.
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi 321 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI 321 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH
Confidence 1133445788888888888876 44444 44566666677788899999999999998888777
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHHHHcCCccCC
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEA 507 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 507 (525)
.++..-+.++...++|++|.+.+++..+....+.+
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~ 356 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEI 356 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Confidence 77888888888888999998888887765544333
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.19 E-value=9.3e-06 Score=54.47 Aligned_cols=61 Identities=16% Similarity=0.105 Sum_probs=52.3
Q ss_pred HHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 412 MIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
++..+.+.|++++|++.|+++ ...| +...+..++..+...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 567888999999999999998 4445 577889999999999999999999999999999875
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.17 E-value=3e-05 Score=59.65 Aligned_cols=106 Identities=11% Similarity=0.027 Sum_probs=74.4
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----hhHHHHH
Q 048766 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----GVVWRAL 444 (525)
Q Consensus 371 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l 444 (525)
++..+...+...|+ +++|.+.++.+...+.-.+ ....+..++.++.+.|++++|...++.+ ...|+ ..++..+
T Consensus 4 ~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGD-YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34555666666777 7888888777765421111 1345666777888888888888888876 22233 4567777
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCChhHHHH
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 477 (525)
+..+.+.|++++|...++++++..|+++.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 888888999999999999999999987765543
No 155
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.17 E-value=3.7e-06 Score=48.19 Aligned_cols=33 Identities=36% Similarity=0.650 Sum_probs=27.2
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 048766 71 SWNSLISGYVQSGKYRKALNLFVELERSEIYAD 103 (525)
Q Consensus 71 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~ 103 (525)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888876
No 156
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.14 E-value=4.7e-06 Score=47.34 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048766 70 VSWNSLISGYVQSGKYRKALNLFVELERSEIYA 102 (525)
Q Consensus 70 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p 102 (525)
.+|+.++.++++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 157
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.12 E-value=4.8e-06 Score=56.56 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=42.4
Q ss_pred hcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 449 GACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 449 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.+.|++++|++.|++++...|+++.++..++.+|.+.|++++|.++++++....+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3567888888888888888888888888888888888888888888877766544
No 158
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.12 E-value=1.1e-05 Score=55.74 Aligned_cols=59 Identities=12% Similarity=0.013 Sum_probs=50.4
Q ss_pred HHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 446 SASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
..+.+.+++++|+++++++++.+|+++..+...+.++...|++++|.+.+++..+.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45678888999999999999999988888888999999999999999999888877663
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.11 E-value=4.9e-05 Score=62.54 Aligned_cols=113 Identities=8% Similarity=-0.066 Sum_probs=84.3
Q ss_pred cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----hhHHHHHHHHHhcCCChHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----GVVWRALLSASGACSDLDVARIS 460 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~ 460 (525)
+..+...+..+.+..+..-....+..++..+...|++++|+..+++. ...|+ ..++..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33444444444322132334566777888888999999999999987 22222 34788889999999999999999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHh-------hccChhHHHHHHHHH
Q 048766 461 AAEVIKLEGDSDYVYVMLCNLYT-------SHGNWDVASVMRNFM 498 (525)
Q Consensus 461 ~~~~~~~~p~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~~ 498 (525)
++++++..|.+...+..++.++. ..|++++|...+++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99999999999998988888888 888888666666544
No 160
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.11 E-value=0.0076 Score=58.07 Aligned_cols=235 Identities=11% Similarity=0.041 Sum_probs=147.5
Q ss_pred CCCHhhHHHHHHHHcccCChHHHHHHHHHHHHc-ccCC--------CcchhhHHHHHHHhcCCHHHHHHHHhhccCCChh
Q 048766 101 YADAYSFTSALAACGQLGSLQLGMAIHSKIVKY-SLER--------GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII 171 (525)
Q Consensus 101 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 171 (525)
.|.+..|..+.......-.++.|+..|-+.... |++. +.....+=+.+ --|++++|++++-++..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 477778888777766666677777666443221 1110 11111222222 24899999999988877765
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhcC-CCC----CcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 048766 172 SWNSVIAASARNGNLELAFGFLHRL-PNP----DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246 (525)
Q Consensus 172 ~~~~l~~~~~~~~~~~~a~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 246 (525)
-+..+.+.|++-...++++.- .+. -...++.+...+.....|++|.+.+..... -...+.++.+..
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~ecly~le 836 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIECLYRLE 836 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHHHHHHHH
Confidence 356677888888888888775 222 234688888888888899999888876432 234566677766
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Q 048766 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326 (525)
Q Consensus 247 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 326 (525)
.+++...+-+.+ +-+....-.+..++.+.|.-++|.+.+-+. + .| .+.+..|...++|.+|.++-+
T Consensus 837 ~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 837 LFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred hhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 666665555443 334555666777888888888887665432 2 12 235567788888888888887
Q ss_pred hccCCCHhHHHH--------------HHHHHHhcCChhHHHHHHHHHhh
Q 048766 327 SLCRKNLVTWNA--------------MITGYARNGDLTKVIELFEQLKT 361 (525)
Q Consensus 327 ~~~~~~~~~~~~--------------l~~~~~~~~~~~~a~~~~~~~~~ 361 (525)
...-|.+.+.-+ -|..+.+.|+.-+|.+++.+|.+
T Consensus 903 ~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 903 RFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred hccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 776554433211 13344556666666666666544
No 161
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.09 E-value=6.8e-06 Score=47.07 Aligned_cols=34 Identities=35% Similarity=0.636 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 048766 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266 (525)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 266 (525)
.+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3689999999999999999999999999999887
No 162
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.07 E-value=0.0088 Score=54.75 Aligned_cols=190 Identities=13% Similarity=0.077 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcc--CCCHhHH-------HHHHHHHH----hcCChhHHHHHHHHHhhCCCCCCC
Q 048766 302 IVVASALLDMYSKCGQVEIADSMFRSLC--RKNLVTW-------NAMITGYA----RNGDLTKVIELFEQLKTVRDLQPD 368 (525)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~-------~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~p~ 368 (525)
...+..++....+.++...|.+.+.-+. .|+...- ..+-+..+ ..-+..+=+.+|+.... ..-|
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs---~DiD 374 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQS---YDID 374 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHh---hccc
Confidence 3456666777777777777777666554 3322211 11111111 01122333445555544 3334
Q ss_pred HhHH-HHH---HHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHH----HHHhcc---CChH---HHHHHHHHhC
Q 048766 369 SVTF-LNV---LAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMI----RLMGQK---GEVW---RAQRMIRELG 433 (525)
Q Consensus 369 ~~~~-~~l---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~ 433 (525)
..-. ..+ ..-+-+.|..-++|+++++.+.+ +.+ |...-+... ..|..+ ..+. +-..++++.+
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g 451 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVG 451 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 3221 122 22344555546788888888773 344 332222211 122211 1111 2223334445
Q ss_pred CCCc----hhHHHHHHHH--HhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 434 FGSY----GVVWRALLSA--SGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 434 ~~~~----~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
..|- ...-+.|..+ +..+|++.++.-.-.-+.+..| ++.+|..+|-++....++++|..++..+
T Consensus 452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4443 2334444443 4678999999998888889999 9999999999999999999999999765
No 163
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.06 E-value=0.017 Score=57.56 Aligned_cols=208 Identities=12% Similarity=0.078 Sum_probs=136.1
Q ss_pred ccCchhhhhHHHHHHHHhCCCchHHHHHHHHHH--HHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChHHHH
Q 048766 15 DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGF--YRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKAL 89 (525)
Q Consensus 15 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~ 89 (525)
..+++..|.+..+.+.+.. ||. .|...+.+ ..+.|+.++|..+++.... .|..+...+-..|...++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 5577888888888887663 333 22233343 3578999999988887654 46667888888888999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcC----------CHHHHH
Q 048766 90 NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG----------SVEDAI 159 (525)
Q Consensus 90 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~a~ 159 (525)
.+|++.... -|+......+..++.+.+++.+-.++--++-+. ++-++..+=.+++.....- -..-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 999998874 577777888888889988888766666555553 3444444444454444321 123455
Q ss_pred HHHhhccCCC-----hhhHHHHHHHHHhCCChHHHHHHHhcC-----CCCCcchHHHHHHHHHhcCChHHHHHHHhcCC
Q 048766 160 GVFGEMIDKD-----IISWNSVIAASARNGNLELAFGFLHRL-----PNPDTISYNEVINGIAQFGDIEDAIMILSSMP 228 (525)
Q Consensus 160 ~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 228 (525)
+.++.+.+.+ ..-.......+-..|++++|++++..- ...+...-+.-+..+...+++++..++-.++.
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 6666665543 111222334556688899998888332 33444455566777777888877776665554
No 164
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=7.9e-06 Score=46.38 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 048766 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265 (525)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 265 (525)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578889999999999999999999998888876
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.03 E-value=0.00018 Score=69.79 Aligned_cols=141 Identities=11% Similarity=0.004 Sum_probs=72.5
Q ss_pred cCCCHhHHHHHHHHHHh--c---CChhHHHHHHHHHhhCCCCCCCH-hHHHHHHHHHcCCCC-------CcchHHHHHHH
Q 048766 329 CRKNLVTWNAMITGYAR--N---GDLTKVIELFEQLKTVRDLQPDS-VTFLNVLAACSHTDI-------PFDKVSEYFES 395 (525)
Q Consensus 329 ~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~-------~~~~a~~~~~~ 395 (525)
.+.|...|...+++... . ++...|+.+|++..+ ..|+. ..+..+..++..... ....+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 35577788887776543 2 236788999999988 77874 334333222211110 01122222222
Q ss_pred hhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 396 MTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
.........++..|..+.-.+...|++++|...++++ ...|+...|..++..+...|+.++|.+.+++++.++|.++
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 2111011223344555544444556666666666554 3444555555555555556666666666666666665444
No 166
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.03 E-value=0.011 Score=54.16 Aligned_cols=424 Identities=10% Similarity=0.041 Sum_probs=239.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048766 24 QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV---VSWNSLISGYVQSGKYRKALNLFVELERSEI 100 (525)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~ 100 (525)
++-+++ +.+ |.|+.+|-.|++-|...+..++.+++++++..|-+ ..|...|++-...+++.....+|.+.....
T Consensus 30 rLRerI-kdN-PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~- 106 (660)
T COG5107 30 RLRERI-KDN-PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS- 106 (660)
T ss_pred HHHHHh-hcC-chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-
Confidence 444444 333 78899999999999999999999999999998654 478888888888899999999999988754
Q ss_pred CCCHhhHHHHHHHHcccCCh------HHHHHHHHHHHH-cccCCC-cchhhHHHHHH---HhcCC------HHHHHHHHh
Q 048766 101 YADAYSFTSALAACGQLGSL------QLGMAIHSKIVK-YSLERG-VVIANCLIDMY---GKCGS------VEDAIGVFG 163 (525)
Q Consensus 101 ~p~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~---~~~g~------~~~a~~~~~ 163 (525)
.+...|...+.-..+.++. ....+.++-... .++.|- ...|+..+..+ -..|. ++.....+.
T Consensus 107 -l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 107 -LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred -ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 4566666666554443321 112233433333 344442 34455444332 23344 444555666
Q ss_pred hccCC---Ch-------hhHHHHHHH-----HHh--CCChHHHHHHHhcCC---------C-CCcchHHH----------
Q 048766 164 EMIDK---DI-------ISWNSVIAA-----SAR--NGNLELAFGFLHRLP---------N-PDTISYNE---------- 206 (525)
Q Consensus 164 ~~~~~---~~-------~~~~~l~~~-----~~~--~~~~~~a~~~~~~~~---------~-~~~~~~~~---------- 206 (525)
++... +. ..|..=++. +.. ..-+..|...++++. + -+..+++.
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 66432 11 111111111 111 111344555555441 0 11122222
Q ss_pred -HHHHHHhc-----CCh--HHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 048766 207 -VINGIAQF-----GDI--EDAIMILSSMPS---PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275 (525)
Q Consensus 207 -l~~~~~~~-----~~~--~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 275 (525)
.|.--... |+. +...-+++.... -....|..--..+...++-+.|++..+.-... .|+. -.-+-.
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL--~~~lse 341 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSL--TMFLSE 341 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCch--heeHHH
Confidence 11111100 000 000011111110 12223333344556677888888876553332 3331 112223
Q ss_pred HhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHH---------cCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhc
Q 048766 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS---------KCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346 (525)
Q Consensus 276 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (525)
.+...++-+.+...|+.+... |.+-|. .-|+++.-.+++-.-...-...|...+....+.
T Consensus 342 ~yel~nd~e~v~~~fdk~~q~-----------L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~ 410 (660)
T COG5107 342 YYELVNDEEAVYGCFDKCTQD-----------LKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRK 410 (660)
T ss_pred HHhhcccHHHHhhhHHHHHHH-----------HHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 333444444444444433211 111111 123333222222222233345778888888888
Q ss_pred CChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHH
Q 048766 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 426 (525)
.-.+.|..+|-+..+.|-+.++...+++++..++.. + ...|..+|+.-... +..++..-...+..+.+.++-+.|.
T Consensus 411 ~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~-d-~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~nar 486 (660)
T COG5107 411 RGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG-D-RATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENAR 486 (660)
T ss_pred hhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC-C-cchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHH
Confidence 889999999999999885567888888888877764 4 78999999876653 3333333455667778899999999
Q ss_pred HHHHHh--CCC--CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 427 RMIREL--GFG--SYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 427 ~~~~~~--~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
.+|+.. ... .-...|..++.--..-|+...+..+-+++.+.-|.
T Consensus 487 aLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 487 ALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 999954 222 22567888888778889999998888888888884
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=9.5e-05 Score=68.69 Aligned_cols=94 Identities=11% Similarity=0.077 Sum_probs=68.7
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHh
Q 048766 340 ITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMG 417 (525)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 417 (525)
...+...|+++.|++.|+++.+ ..| +...+..+..++...|+ +++|+..++++.+ +.| +...|..++.+|.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~-~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGN-FTEAVADANKAIE---LDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH---hCcCCHHHHHHHHHHHH
Confidence 4556677888888888888887 455 45666777777888888 8888888888874 344 4667777888888
Q ss_pred ccCChHHHHHHHHHh-CCCCchhH
Q 048766 418 QKGEVWRAQRMIREL-GFGSYGVV 440 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~-~~~~~~~~ 440 (525)
..|++++|+..|++. ...|+...
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHH
Confidence 888888888888876 44454433
No 168
>PRK15331 chaperone protein SicA; Provisional
Probab=98.00 E-value=6.4e-05 Score=59.03 Aligned_cols=90 Identities=11% Similarity=-0.134 Sum_probs=75.1
Q ss_pred HHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccCh
Q 048766 411 SMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW 488 (525)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 488 (525)
....-+...|++++|..+|+-+ -..-++..|..|+..+...+++++|+..|..+..++++||.++...+.++...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3444556789999999999876 22334566788888888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 048766 489 DVASVMRNFMRE 500 (525)
Q Consensus 489 ~~A~~~~~~~~~ 500 (525)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999888776
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=3.9e-05 Score=65.81 Aligned_cols=90 Identities=12% Similarity=0.048 Sum_probs=78.9
Q ss_pred HHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhH
Q 048766 413 IRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
+.-+.+.+++.+|+..|.++ ...|. ++.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34566789999999999987 55555 56667778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 048766 491 ASVMRNFMRERG 502 (525)
Q Consensus 491 A~~~~~~~~~~~ 502 (525)
|++.|++.++..
T Consensus 168 A~~aykKaLeld 179 (304)
T KOG0553|consen 168 AIEAYKKALELD 179 (304)
T ss_pred HHHHHHhhhccC
Confidence 999998876643
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.98 E-value=0.00022 Score=63.83 Aligned_cols=134 Identities=9% Similarity=0.152 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcC-CCCCcchHHHHHHHhhhhhCCCCChhHHHHH
Q 048766 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412 (525)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 412 (525)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|......-.. .++ .+.|.++|+...+. +..+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d-~~~A~~Ife~glk~--f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKD-PKRARKIFERGLKK--FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS--HHHHHHHHHHHHHH--HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 467788888888888999999999998754 2233444444433222 333 67799999999874 45677888889
Q ss_pred HHHHhccCChHHHHHHHHHh-CCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 413 IRLMGQKGEVWRAQRMIREL-GFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
++.+.+.|+.+.|..+|++. ..-+. ...|..++..-.+.|+.+....+.+++.+.-|++.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999987 22222 35888888888889999999999999999888643
No 171
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.97 E-value=0.012 Score=52.78 Aligned_cols=282 Identities=14% Similarity=0.113 Sum_probs=196.1
Q ss_pred HHHHHHHHH--hcCChHHHHHHHhcCC---CCCcccHHHHHH--HHHhcCChhHHHHHHHHHhhCCCCCCHH--HHHHHH
Q 048766 204 YNEVINGIA--QFGDIEDAIMILSSMP---SPNSSSWNSILT--GYVNRNRVPEALHLFGEMQSKDVPMDEY--TFSTML 274 (525)
Q Consensus 204 ~~~l~~~~~--~~~~~~~a~~~~~~~~---~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~ 274 (525)
|..|-.++. -.|+-..|.+.-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|... |... .+..|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 334444443 4677778877766544 345544444443 345679999999999999863 3221 233333
Q ss_pred HHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc-----CCCHh--HHHHHHHHHH---
Q 048766 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC-----RKNLV--TWNAMITGYA--- 344 (525)
Q Consensus 275 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~~--- 344 (525)
-...+.|..+.|.++-+..-..- +.-.....+.+...+..|+|+.|+++.+.-. +++.. .--.|+.+-.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 34457899999999888877664 4446677889999999999999999998764 44433 1222332211
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCCH-hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChH
Q 048766 345 RNGDLTKVIELFEQLKTVRDLQPDS-VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW 423 (525)
Q Consensus 345 ~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 423 (525)
-..+...|...-.+..+ +.||. ..-.....++.+.|+ ..++-.+++.+-+. .|.+..+... .+.+.|+..
T Consensus 241 ldadp~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~-~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdta 311 (531)
T COG3898 241 LDADPASARDDALEANK---LAPDLVPAAVVAARALFRDGN-LRKGSKILETAWKA---EPHPDIALLY--VRARSGDTA 311 (531)
T ss_pred hcCChHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccc-hhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCcH
Confidence 23467788888888777 88985 444556678889998 99999999999854 6776655432 334666643
Q ss_pred HHHHHHHHh----CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc-cChhHHHHHHHH
Q 048766 424 RAQRMIREL----GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH-GNWDVASVMRNF 497 (525)
Q Consensus 424 ~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 497 (525)
.. -+++. ..+| +..+......+-...|++..|..-.+.+....| ....|..|+++-... ||-.++...+.+
T Consensus 312 ~d--RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 312 LD--RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HH--HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 32 22222 2334 456777788888899999999999999999999 778899999987665 999999999987
Q ss_pred HHHc
Q 048766 498 MRER 501 (525)
Q Consensus 498 ~~~~ 501 (525)
.++.
T Consensus 389 av~A 392 (531)
T COG3898 389 AVKA 392 (531)
T ss_pred HhcC
Confidence 7665
No 172
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.92 E-value=0.00012 Score=64.16 Aligned_cols=96 Identities=14% Similarity=-0.075 Sum_probs=63.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh-CCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC---hhHHHHHHH
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL-GFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGDS---DYVYVMLCN 480 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 480 (525)
|......+.+.|++++|+..|+.+ ...|+ +..+..++..|...|++++|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333445567777777777765 22233 2456667777777788888888888888777654 455666677
Q ss_pred HHhhccChhHHHHHHHHHHHcCCc
Q 048766 481 LYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
++...|++++|..+|+++.+..+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcC
Confidence 777778888888888777766543
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.92 E-value=2.6e-05 Score=52.90 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=50.0
Q ss_pred hccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 417 GQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 417 ~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
...|++++|++.|+++ .. +.+...+..++..|.+.|++++|.+.++++....|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4578899999999887 33 3356777788899999999999999999999999977776665543
No 174
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.91 E-value=0.031 Score=55.76 Aligned_cols=114 Identities=14% Similarity=0.161 Sum_probs=84.3
Q ss_pred ccCCHHHHHHHHhcCCC--CCcccHHHHHHHH--HhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHH
Q 048766 50 KINSLADAHKMFVEIPQ--PSVVSWNSLISGY--VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA 125 (525)
Q Consensus 50 ~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 125 (525)
..+++.+|+...+++.+ ||. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|.+.+..++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 45677888877777665 554 355556554 5789999999888888765544 77888888889999999999999
Q ss_pred HHHHHHHcccCCCcchhhHHHHHHHhcCCHHH----HHHHHhhccC
Q 048766 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVED----AIGVFGEMID 167 (525)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~ 167 (525)
+++...+.. |+......+..+|.+.+++.+ |++++....+
T Consensus 99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk 142 (932)
T KOG2053|consen 99 LYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK 142 (932)
T ss_pred HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999888763 667777778888888877655 4555554444
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.91 E-value=2.9e-05 Score=55.24 Aligned_cols=78 Identities=12% Similarity=0.128 Sum_probs=42.6
Q ss_pred cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCc-hhHHHHHHHHHhcCCChHHHHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY-GVVWRALLSASGACSDLDVARISAAE 463 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 463 (525)
++.|+.+++++.+.....++...+..++.+|.+.|++++|..++++.+..+. ......++.++.+.|++++|++++++
T Consensus 5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 6666666666665421111334444466666666666666666655422222 23334445666667777777766665
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.90 E-value=0.016 Score=52.00 Aligned_cols=287 Identities=14% Similarity=0.106 Sum_probs=175.1
Q ss_pred hHHHHHHHHH--hCCChHHHHHHHhcC---CCCCcchHHHHHH--HHHhcCChHHHHHHHhcCCC-CCccc--HHHHHHH
Q 048766 172 SWNSVIAASA--RNGNLELAFGFLHRL---PNPDTISYNEVIN--GIAQFGDIEDAIMILSSMPS-PNSSS--WNSILTG 241 (525)
Q Consensus 172 ~~~~l~~~~~--~~~~~~~a~~~~~~~---~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~l~~~ 241 (525)
.|..|-.++. ..|+-..|.++-.+. ...|......++. +-.-.|++++|.+-|+.|.. |.... ...|.-.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 4555555544 356677777666555 3344444444443 33457999999999999874 33322 2223333
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhC-CCchHHH--HHHHHHHHH---cC
Q 048766 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVV--ASALLDMYS---KC 315 (525)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~ 315 (525)
-.+.|..+.|..+-+..-..- +--.-.....+...+..|+++.|+++.+.-.... +.++..- -..|+.+-. -.
T Consensus 164 Aqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 346788888888777765542 2234567788888999999999999988776543 2333211 111221111 12
Q ss_pred CCHHHHHHHHHhcc--CCCHh-HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHH
Q 048766 316 GQVEIADSMFRSLC--RKNLV-TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392 (525)
Q Consensus 316 g~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~ 392 (525)
.+...|...-.+.. .||.+ .--.-..++.+.|+..++-.+++.+.+. .|-+... .+....+.|+ .+..-
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia--~lY~~ar~gd---ta~dR 314 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIA--LLYVRARSGD---TALDR 314 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHH--HHHHHhcCCC---cHHHH
Confidence 23445554444443 44443 2333457788999999999999999884 4444332 2223344443 55555
Q ss_pred HHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHHHHHHHHH-hcCCChHHHHHHHHHHHhh
Q 048766 393 FESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSAS-GACSDLDVARISAAEVIKL 467 (525)
Q Consensus 393 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~ 467 (525)
+++..+...++|+ ......+.++-...|++..|..--+.. ...|....|..+...- ...||-+++...+.++++.
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5555444355664 566667777888889988887776665 5567777777666654 4569999999988888874
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.89 E-value=0.00031 Score=53.01 Aligned_cols=89 Identities=16% Similarity=-0.018 Sum_probs=59.6
Q ss_pred HHHHHHhccCChHHHHHHHHHh---CCCCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC---ChhHHHHHHHHH
Q 048766 411 SMIRLMGQKGEVWRAQRMIREL---GFGSY--GVVWRALLSASGACSDLDVARISAAEVIKLEGD---SDYVYVMLCNLY 482 (525)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~---~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~ 482 (525)
.+..++-..|+.++|+.++++. +.... ...+..+..++...|++++|+.++++.....|+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 4455666777777777777765 22222 345566777777778888888888777777676 555566667777
Q ss_pred hhccChhHHHHHHHHHH
Q 048766 483 TSHGNWDVASVMRNFMR 499 (525)
Q Consensus 483 ~~~g~~~~A~~~~~~~~ 499 (525)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 77788887777765443
No 178
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.88 E-value=1.2e-05 Score=45.18 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=31.5
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHhhccChhHHHH
Q 048766 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493 (525)
Q Consensus 460 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 493 (525)
+|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999963
No 179
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00068 Score=60.87 Aligned_cols=152 Identities=15% Similarity=0.070 Sum_probs=81.7
Q ss_pred HHHcCCCHHHHHHHHHhccCCCHh-HHHHHH--HHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHH---HHH--------
Q 048766 311 MYSKCGQVEIADSMFRSLCRKNLV-TWNAMI--TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL---NVL-------- 376 (525)
Q Consensus 311 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~---~l~-------- 376 (525)
++...|+.+.|.+.--.+.+.|.. .+...+ .++...++.+.+..-|++... ..|+...-. ...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHh
Confidence 344455555555554444433322 122222 222334555666666666555 444432211 111
Q ss_pred --HHHcCCCCCcchHHHHHHHhhhhhCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHH
Q 048766 377 --AACSHTDIPFDKVSEYFESMTKDYGIKPT-----VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSA 447 (525)
Q Consensus 377 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~ 447 (525)
.-..+.|. +..|.+.|.+.+ ++.|+ ...|.....+..+.|+..+|+.-.++. .+.+. ...+..-..+
T Consensus 255 ~gN~~fk~G~-y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 255 RGNDAFKNGN-YRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred hhhhHhhccc-hhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 12345666 777777777776 44553 445666666667778888887777765 33332 2233333444
Q ss_pred HhcCCChHHHHHHHHHHHhhcC
Q 048766 448 SGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 448 ~~~~~~~~~A~~~~~~~~~~~p 469 (525)
+...+++++|.+-++++.+...
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 5556778888888887777653
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.84 E-value=0.00031 Score=68.19 Aligned_cols=137 Identities=15% Similarity=0.098 Sum_probs=98.4
Q ss_pred CCCCHhHHHHHHHHHcCCCC----CcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhcc--------CChHHHHHHHHH
Q 048766 365 LQPDSVTFLNVLAACSHTDI----PFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQK--------GEVWRAQRMIRE 431 (525)
Q Consensus 365 ~~p~~~~~~~l~~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 431 (525)
.+.+...|...+.+...... +...|..+|+++.+ ..|+ ...+..+..+|... ++..++.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 45577888888877543211 26689999999984 4776 34444444443221 123444454444
Q ss_pred h----CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 432 L----GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 432 ~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
. ....++..+..+.......|++++|...++++++++| +..+|..++.++...|+.++|...+++.....+..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3 1333456777777667778999999999999999999 68899999999999999999999999998877644
No 181
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.84 E-value=0.00055 Score=56.52 Aligned_cols=128 Identities=16% Similarity=0.198 Sum_probs=79.9
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC--HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHH
Q 048766 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD--SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHC 409 (525)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 409 (525)
...+..+...+...|++++|+..|++..+.. ..|. ...+..+...+...|+ +++|...+++..+. .| +...+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~ 109 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGE-HDKALEYYHQALEL---NPKQPSAL 109 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CcccHHHH
Confidence 3456667777777788888888888777633 2221 3456666777777777 78888777777642 33 34555
Q ss_pred HHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
..++.+|...|+...+..-++.. .+.+++|.++++++++.+|++ +..++..+...|
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 56666666666655544333221 123678888999998888865 444444444433
No 182
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.83 E-value=7.3e-05 Score=50.81 Aligned_cols=65 Identities=15% Similarity=0.095 Sum_probs=56.6
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCC-ChHHHHHHHHHHHhhcC
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACS-DLDVARISAAEVIKLEG 469 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p 469 (525)
++..|..++..+...|++++|+..|++. ...| +...|..++.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888999999999999999999986 3334 5778889999999999 79999999999999988
No 183
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.79 E-value=5.7e-05 Score=45.68 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 439 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
..+..+..+|...|++++|+++|+++++..|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999999988875
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.74 E-value=0.0028 Score=57.12 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhC
Q 048766 235 WNSILTGYVNRNRVPEALHLFGEMQSK 261 (525)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~m~~~ 261 (525)
+..+...+.+.|++++|.++|++....
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445566666777777777777766543
No 185
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00023 Score=51.96 Aligned_cols=90 Identities=11% Similarity=0.044 Sum_probs=45.2
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCCh
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDL 454 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 454 (525)
..+...|+ +++|...++.+.+. .+.+...+..++..+...|++++|.+.++.. ...| +...+..++..+...|++
T Consensus 8 ~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 8 NLYYKLGD-YDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHhc-HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 33344444 55555555554421 1112234444555555555555555555553 2122 223455555566666666
Q ss_pred HHHHHHHHHHHhhcC
Q 048766 455 DVARISAAEVIKLEG 469 (525)
Q Consensus 455 ~~A~~~~~~~~~~~p 469 (525)
+.|...+.++++..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666666555
No 186
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.73 E-value=0.0011 Score=52.10 Aligned_cols=87 Identities=9% Similarity=0.070 Sum_probs=40.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHh-HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHH
Q 048766 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSV-TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRL 415 (525)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 415 (525)
.+...+...|++++|.++|+-+.. ..|... -|..|..++...|+ +++|+..|...... .| ++..+..++.+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~-~~~AI~aY~~A~~L---~~ddp~~~~~ag~c 112 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKH-WGEAIYAYGRAAQI---KIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc---CCCCchHHHHHHHH
Confidence 334444455555555555555555 444332 22333333333444 55555555555422 22 34444445555
Q ss_pred HhccCChHHHHHHHHH
Q 048766 416 MGQKGEVWRAQRMIRE 431 (525)
Q Consensus 416 ~~~~g~~~~A~~~~~~ 431 (525)
+...|+.+.|.+.|+.
T Consensus 113 ~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 113 YLACDNVCYAIKALKA 128 (157)
T ss_pred HHHcCCHHHHHHHHHH
Confidence 5555555555555543
No 187
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.72 E-value=0.0005 Score=64.02 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=53.0
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHH
Q 048766 71 SWNSLISGYVQSGKYRKALNLFVELERS--EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148 (525)
Q Consensus 71 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (525)
....++..+....+.+.+..++-+.... ....-..|.+++++.|.+.|..+.+..++..=...|+-||..+++.||+.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 3444455544445555555555555543 12222344556666666666666666666666666666666666666666
Q ss_pred HHhcCCHHHHHHHHhhc
Q 048766 149 YGKCGSVEDAIGVFGEM 165 (525)
Q Consensus 149 ~~~~g~~~~a~~~~~~~ 165 (525)
+.+.|++..|.+++..|
T Consensus 148 fl~~~~~~~A~~V~~~~ 164 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEM 164 (429)
T ss_pred HhhcccHHHHHHHHHHH
Confidence 66666666666665555
No 188
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=5.5e-05 Score=41.71 Aligned_cols=31 Identities=32% Similarity=0.726 Sum_probs=25.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 048766 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263 (525)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 263 (525)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.70 E-value=0.0011 Score=52.75 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=91.2
Q ss_pred CCCCChhHHHHHHHHHhccCChHHHHHHHHHh---CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC--ChhHH
Q 048766 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL---GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD--SDYVY 475 (525)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~ 475 (525)
.+.|++.....|..++.+.|+..+|...|++. .+..|......+..+....+++..|...++++.+..|. +|...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 56788888889999999999999999999987 45567888888999999999999999999999998874 56778
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 476 VMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
..+++.+...|++++|...|+...+--+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 88999999999999999999888765443
No 190
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=6.2e-05 Score=41.50 Aligned_cols=29 Identities=41% Similarity=0.810 Sum_probs=19.4
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048766 71 SWNSLISGYVQSGKYRKALNLFVELERSE 99 (525)
Q Consensus 71 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 99 (525)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
No 191
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.68 E-value=0.0018 Score=58.28 Aligned_cols=149 Identities=15% Similarity=0.247 Sum_probs=66.8
Q ss_pred HHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhc-CChhHHHHHHHHHhhCCC--CCC--CHhHHHHHHHHHcCC
Q 048766 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN-GDLTKVIELFEQLKTVRD--LQP--DSVTFLNVLAACSHT 382 (525)
Q Consensus 308 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~--~~p--~~~~~~~l~~~~~~~ 382 (525)
.+..|...|++..|-+.+. .+...|... |+++.|++.|++..+.-. -.+ -..++..+...+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 3344555555555544333 234455555 666666666666544210 011 123344555556666
Q ss_pred CCCcchHHHHHHHhhhhhCCCC-----Ch-hHHHHHHHHHhccCChHHHHHHHHHh-CCCC------chhHHHHHHHHHh
Q 048766 383 DIPFDKVSEYFESMTKDYGIKP-----TV-EHCCSMIRLMGQKGEVWRAQRMIREL-GFGS------YGVVWRALLSASG 449 (525)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~------~~~~~~~l~~~~~ 449 (525)
|+ +++|.++|+++... .... +. ..+...+-++...||+..|.+.+++. ...| .......++.++-
T Consensus 169 ~~-y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 169 GR-YEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp T--HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 66 66666666665542 1111 11 11222333444566666666666664 2222 1234445555553
Q ss_pred c--CCChHHHHHHHHHHHhhcC
Q 048766 450 A--CSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 450 ~--~~~~~~A~~~~~~~~~~~p 469 (525)
. ...++.++.-|+.+.+++|
T Consensus 247 ~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS---H
T ss_pred hCCHHHHHHHHHHHcccCccHH
Confidence 3 2345555555555555544
No 192
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.06 Score=52.26 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=30.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHh
Q 048766 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396 (525)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 396 (525)
|..--...|..+.|++.--.+..-.++-|-...|..+.-+.+.... +....+.|-++
T Consensus 1027 lAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~ra-FGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1027 LAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRA-FGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhh-hhhhHHHHHHH
Confidence 3333445677777776554444333356666667666555444444 44444444444
No 193
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.67 E-value=0.00042 Score=62.08 Aligned_cols=131 Identities=13% Similarity=0.111 Sum_probs=101.2
Q ss_pred hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhc-cCChHHHHHHHHHh--CCCCchhHHHHHHH
Q 048766 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ-KGEVWRAQRMIREL--GFGSYGVVWRALLS 446 (525)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~~~~~~~~~l~~ 446 (525)
.+|..++....+.+. .+.|+.+|.++.+. -..+...|...+.+-.. .++.+.|.++|+.. ....+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g-~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEG-IEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-hHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 467788888888887 99999999999853 22345556666666344 56777799999986 44567788888999
Q ss_pred HHhcCCChHHHHHHHHHHHhhcCCCh---hHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 447 ASGACSDLDVARISAAEVIKLEGDSD---YVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 447 ~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.+...|+.+.|..+|++++..-|.+. ..|..++..-.+.|+.+.+..+.+++.+.-.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999776444 5799999999999999999999999987643
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.67 E-value=0.00026 Score=48.74 Aligned_cols=66 Identities=9% Similarity=0.034 Sum_probs=54.7
Q ss_pred HHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHH
Q 048766 413 IRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 478 (525)
...|.+.+++++|.++++.+ ...| ++..|...+..+...|++++|.+.++++++..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 35788899999999999987 4444 466777888899999999999999999999999877765543
No 195
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.66 E-value=0.00024 Score=65.45 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=55.8
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCch----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYG----VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
+...+..++.+|.+.|++++|+..|++. ...|+. .+|..+..+|...|++++|++.++++++..+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4556677777777777777777777764 445553 24667777777777777777777777776321 111111
Q ss_pred H--HHhhccChhHHHHHHHHHHHcCCc
Q 048766 480 N--LYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 480 ~--~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
. .+..-.+.++..++++.+.+.|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 0 111223344566666666666553
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.65 E-value=0.00053 Score=61.45 Aligned_cols=131 Identities=10% Similarity=-0.004 Sum_probs=94.3
Q ss_pred hHHHHHHHHHcCCCCCcchHHHHHHHh---hhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-------C-CCCc
Q 048766 370 VTFLNVLAACSHTDIPFDKVSEYFESM---TKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-------G-FGSY 437 (525)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~~a~~~~~~~---~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~~~ 437 (525)
..|..+...|.-.|+ ++.|+...+.- .+.+|-.. ....+..+..++.-.|+++.|.+.++.. + ....
T Consensus 196 Ra~GnLGNTyYlLGd-f~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGD-FDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred chhcccCceeeeecc-HHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 456666667777788 88888765532 22223222 2456778888888999999999988763 2 2233
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc------CCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 438 GVVWRALLSASGACSDLDVARISAAEVIKLE------GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 438 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
..+...|..+|.-..++++|+.+..+-+++. -....++..|+.+|...|..++|+.+.+.-.+.
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5567788888888889999999888766543 234677889999999999999999887766553
No 197
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.64 E-value=0.05 Score=50.11 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=90.9
Q ss_pred HhccCchhhhhHHHHHHHHhCCCchH------HHHHHHHHHHHccCCHHHHHHHHhcCCC--CCcccHHHHHHHH--Hhc
Q 048766 13 SSDLGWDTYCQQLHCYILKSGFLSNV------FVSTALMGFYRKINSLADAHKMFVEIPQ--PSVVSWNSLISGY--VQS 82 (525)
Q Consensus 13 ~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~--~~~ 82 (525)
+-+.+++.+|..+|.++.+.. ..++ ..-+.++++|-. .+.+.....+....+ | ...|-.+..++ .+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHh
Confidence 457889999999999987664 3332 234577777764 556655555555544 3 33455555543 467
Q ss_pred CChHHHHHHHHHHHhc--CCCC------------CHhhHHHHHHHHcccCChHHHHHHHHHHHHcccC----CCcchhhH
Q 048766 83 GKYRKALNLFVELERS--EIYA------------DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE----RGVVIANC 144 (525)
Q Consensus 83 ~~~~~A~~~~~~m~~~--~~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 144 (525)
+++.+|++.+....+. +..| |-..=+..+.++...|++.+++.+++.+...=++ -+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8999999988887664 3222 2223456677788999999999999888765443 67788888
Q ss_pred HHHHHHh
Q 048766 145 LIDMYGK 151 (525)
Q Consensus 145 l~~~~~~ 151 (525)
++-.+++
T Consensus 173 ~vlmlsr 179 (549)
T PF07079_consen 173 AVLMLSR 179 (549)
T ss_pred HHHHHhH
Confidence 6666554
No 198
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.63 E-value=0.011 Score=51.73 Aligned_cols=173 Identities=10% Similarity=0.039 Sum_probs=106.1
Q ss_pred HHHHHHcCCCHHHHHHHHHhccC--CC-HhH---HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH--hHHHHHHHHH
Q 048766 308 LLDMYSKCGQVEIADSMFRSLCR--KN-LVT---WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS--VTFLNVLAAC 379 (525)
Q Consensus 308 l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~ 379 (525)
....+.+.|++++|.+.|+.+.. |+ ... .-.++.++.+.++++.|...+++..+. .|+. ..+...+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~---~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL---NPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CcCCCchHHHHHHHHH
Confidence 34445667888888888888862 22 222 234567778889999999999998884 4432 2333333332
Q ss_pred cC--CCC--------------Cc---chHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhH
Q 048766 380 SH--TDI--------------PF---DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440 (525)
Q Consensus 380 ~~--~~~--------------~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 440 (525)
+. .+. +. ..|.+.|+.+.+. -|+ ..-..+|...+..+...- ...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~-------------S~ya~~A~~rl~~l~~~l-a~~ 177 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPN-------------SQYTTDATKRLVFLKDRL-AKY 177 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcC-------------ChhHHHHHHHHHHHHHHH-HHH
Confidence 21 110 01 2344455555443 233 222334444333331000 111
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh---hHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLEGDSD---YVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
-..+...|.+.|.+..|+.-++.+++.-|+.+ .++..+..+|...|..++|......+..
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 12456678899999999999999999887654 5577888999999999999998876643
No 199
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.63 E-value=0.00069 Score=49.13 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCHhhHHHHHHHHcccC--------ChHHHHHHHHHHHHcccCCCcchhh
Q 048766 73 NSLISGYVQSGKYRKALNLFVELERSEI-YADAYSFTSALAACGQLG--------SLQLGMAIHSKIVKYSLERGVVIAN 143 (525)
Q Consensus 73 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 143 (525)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.++++|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455566677999999999999999999 899999999998876542 2445778899999999999999999
Q ss_pred HHHHHHHh
Q 048766 144 CLIDMYGK 151 (525)
Q Consensus 144 ~l~~~~~~ 151 (525)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987764
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.58 E-value=0.0017 Score=57.00 Aligned_cols=101 Identities=15% Similarity=0.014 Sum_probs=77.2
Q ss_pred hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----hhH
Q 048766 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----GVV 440 (525)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~ 440 (525)
..|...+....+.|+ +++|...|+.+.+. .|+ +..+..++..|...|++++|...|+.+ ...|+ +..
T Consensus 144 ~~Y~~A~~l~~~~~~-y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 144 TDYNAAIALVQDKSR-QDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 445555544456677 99999999999865 343 357778899999999999999999987 22222 456
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhH
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 474 (525)
+..++..+...|++++|...|+++++..|++..+
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 6667778888999999999999999999976543
No 201
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.56 E-value=0.00025 Score=49.57 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc----CCC---hhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 438 GVVWRALLSASGACSDLDVARISAAEVIKLE----GDS---DYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 438 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
..++..+...|...|++++|+..+++++++. +++ ..++..++.++...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3467778888889999999999999988753 222 45688999999999999999999988764
No 202
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.55 E-value=0.014 Score=53.44 Aligned_cols=160 Identities=18% Similarity=0.117 Sum_probs=91.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHhccCC-------CHhHHHHHHHHHHh---cCChhHHHHHHHHHhhCCCCCCCHhHHHHHH
Q 048766 307 ALLDMYSKCGQVEIADSMFRSLCRK-------NLVTWNAMITGYAR---NGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376 (525)
Q Consensus 307 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 376 (525)
.++-.|-...+++...++.+.+... ....-...+-++.+ .|+.++|++++..+.... ..+++.+|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-ENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-CCCChHHHHHHH
Confidence 4445566777777777777776532 11222233444455 677788888877744433 456666666555
Q ss_pred HHHcC---------CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChH----HHHHHH---HHh-------C
Q 048766 377 AACSH---------TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW----RAQRMI---REL-------G 433 (525)
Q Consensus 377 ~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~-------~ 433 (525)
..|-. ... .++|+..|.+.- .+.|+...--.++-.+...|... +..++- ..+ .
T Consensus 225 RIyKD~~~~s~~~d~~~-ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRES-LDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHcCccchHH-HHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 54321 222 566777776554 34454433333333333333211 222222 111 2
Q ss_pred CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 434 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
...+...+.+++.++.-.||+++|.+.++++.++.|+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 23445556678888899999999999999999998743
No 203
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.50 E-value=0.002 Score=53.02 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--CHhHHHHHHHHHcCCCCCcchHHHHHHHhh
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQP--DSVTFLNVLAACSHTDIPFDKVSEYFESMT 397 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 397 (525)
.|..++..+...|++++|+..|++..... ..| ...++..+...+...|+ +++|++.++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~~lg~~~~~~g~-~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLE-IDPYDRSYILYNIGLIHTSNGE-HTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 34444444445555555555555554421 111 11234444444444444 555555554444
No 204
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.45 E-value=0.0015 Score=61.02 Aligned_cols=119 Identities=10% Similarity=0.111 Sum_probs=91.4
Q ss_pred CCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC-C-----CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhH
Q 048766 34 FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ-P-----SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107 (525)
Q Consensus 34 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 107 (525)
.+.+......++..+....+++.+..++-+... | -..+..++++.|...|..+.++++++.=...|+-||..|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 355666667777777777788888877766654 1 2234568899999999999999999888888999999999
Q ss_pred HHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhc
Q 048766 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC 152 (525)
Q Consensus 108 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (525)
+.||..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999988888777666666665555555444
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.45 E-value=0.032 Score=53.51 Aligned_cols=53 Identities=15% Similarity=0.032 Sum_probs=32.7
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
..+...+...+.+... +..|-++|.+|-. ...++++....+++.+|..+-++.
T Consensus 747 re~l~~~a~ylk~l~~-~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDS-PGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred hhHHHHHHHHHhhccc-cchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhC
Confidence 3444444444444555 6777777776642 245566777777777777777766
No 206
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.45 E-value=0.018 Score=48.95 Aligned_cols=176 Identities=16% Similarity=0.113 Sum_probs=89.3
Q ss_pred HHHHHHcCCCHHHHHHHHHhccC--C----CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHh--HHHHHHHHH
Q 048766 308 LLDMYSKCGQVEIADSMFRSLCR--K----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV--TFLNVLAAC 379 (525)
Q Consensus 308 l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~ 379 (525)
....+...|++++|.+.|+.+.. | -....-.++.++.+.|+++.|...+++..+ .-|+.. .+...+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~---~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK---LYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH---H-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCcchhhHHHHHHH
Confidence 34455667777777777777752 1 122445556677777777777777777766 334321 122222222
Q ss_pred cCCCCCcchHHHHHHHhhhhh-CCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHH
Q 048766 380 SHTDIPFDKVSEYFESMTKDY-GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 458 (525)
+... .....+ ....+. ...--...+..++..|=...-..+|...+..+... -...-..++..|.+.|.+..|.
T Consensus 88 ~~~~----~~~~~~-~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~-la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 88 SYYK----QIPGIL-RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR-LAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHH----HHHHHH--TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHH----hCccch-hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcccHHHHH
Confidence 1111 000000 000000 00000122333444444444444554444443100 0111123567788999999999
Q ss_pred HHHHHHHhhcCCChh---HHHHHHHHHhhccChhHHH
Q 048766 459 ISAAEVIKLEGDSDY---VYVMLCNLYTSHGNWDVAS 492 (525)
Q Consensus 459 ~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 492 (525)
.-++.+++..|+.+. ++..++.+|.+.|..+.|.
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999997654 4667888899999888554
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.44 E-value=0.007 Score=45.76 Aligned_cols=102 Identities=11% Similarity=0.050 Sum_probs=60.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCC--HHHHHHHHHHhccccchHHHHHHHHHHHHhCCC--chHHHHHHHHHHH
Q 048766 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMD--EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD--ASIVVASALLDMY 312 (525)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 312 (525)
.+..++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++........ .+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345667778888888888888888776544 234555666677777777777777777654311 1222222333455
Q ss_pred HcCCCHHHHHHHHHhccCCCHhHHHH
Q 048766 313 SKCGQVEIADSMFRSLCRKNLVTWNA 338 (525)
Q Consensus 313 ~~~g~~~~A~~~~~~~~~~~~~~~~~ 338 (525)
...|+.++|.+.+-...-++...|..
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~r 111 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRR 111 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777766655443333333333
No 208
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.43 E-value=0.0025 Score=46.28 Aligned_cols=79 Identities=11% Similarity=0.082 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCHHHHHHHHHHhcccc--------chHHHHHHHHHHHHhCCCchHHHHH
Q 048766 236 NSILTGYVNRNRVPEALHLFGEMQSKDV-PMDEYTFSTMLSGIAGLS--------ALTWGMLIHSCVIKQGLDASIVVAS 306 (525)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 306 (525)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++...+.+|+.+...++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666677999999999999999999 899999999998877543 3556677888898889999999999
Q ss_pred HHHHHHHc
Q 048766 307 ALLDMYSK 314 (525)
Q Consensus 307 ~l~~~~~~ 314 (525)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.032 Score=47.37 Aligned_cols=126 Identities=13% Similarity=0.044 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhC-----CCchHHHHHHHHH
Q 048766 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-----LDASIVVASALLD 310 (525)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~ 310 (525)
+.++.++.-.|.+.-.++.+++.++..-+-++.....+.+...+.|+.+.|..+++...+.. ......+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 44555566666777777777777776555566666667777777777777777777665432 2223333333344
Q ss_pred HHHcCCCHHHHHHHHHhccC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 311 MYSKCGQVEIADSMFRSLCR---KNLVTWNAMITGYARNGDLTKVIELFEQLKT 361 (525)
Q Consensus 311 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (525)
.|.-.+++..|...+.+++. .|+..-|.-.-...-.|+..+|++.++.|.+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666677777766652 3344444444444456677777777777776
No 210
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.42 E-value=0.093 Score=47.74 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=37.2
Q ss_pred HHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 048766 177 IAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256 (525)
Q Consensus 177 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 256 (525)
+.-+...|+...|.++-.+..-|+..-|...+.+++..++|++-..+... +.++..|..++..|.+.|+..+|..++.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~ 261 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIP 261 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHH
Confidence 34444444444444444444444444444445555555555444443332 2334445555555555555555544444
Q ss_pred H
Q 048766 257 E 257 (525)
Q Consensus 257 ~ 257 (525)
.
T Consensus 262 k 262 (319)
T PF04840_consen 262 K 262 (319)
T ss_pred h
Confidence 3
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.014 Score=49.46 Aligned_cols=134 Identities=9% Similarity=0.021 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh----CCCCChhHHH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY----GIKPTVEHCC 410 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~ 410 (525)
..+.++..+.-.|.+.-.+..+.+.++.. .+-++.....+.+.-.+.|+ .+.|..+|++..+.. ++........
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD-~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGD-IKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 44555566666777777777777777743 23355666667777777777 777777777665432 2222233333
Q ss_pred HHHHHHhccCChHHHHHHHHHhC--CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 411 SMIRLMGQKGEVWRAQRMIRELG--FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
.....|.-++++.+|...+.+.. .+.++...+.-.-...-.|+...|++..+.++...|.
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 33445556667777777776652 1222333333333333456777777777777777763
No 212
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.35 E-value=0.0071 Score=46.63 Aligned_cols=95 Identities=21% Similarity=0.082 Sum_probs=67.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh----CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhH---HHHHHH
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL----GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV---YVMLCN 480 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~ 480 (525)
+..-+....+.|++++|++.|+.+ +..+- ...-..++.++.+.|++++|...+++.+++.|.++.+ +...+.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 333455556788899998888887 33332 3455668888999999999999999999999877654 444455
Q ss_pred HHhhccC---------------hhHHHHHHHHHHHcCC
Q 048766 481 LYTSHGN---------------WDVASVMRNFMRERGL 503 (525)
Q Consensus 481 ~~~~~g~---------------~~~A~~~~~~~~~~~~ 503 (525)
++..+.. ..+|..-|+++++.-+
T Consensus 93 ~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 93 SYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 5555544 6677777777776543
No 213
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0048 Score=55.81 Aligned_cols=138 Identities=12% Similarity=-0.039 Sum_probs=101.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhcc
Q 048766 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419 (525)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 419 (525)
...|.+.|++..|..-|++... .-+.. ..-+ .++..... ..-..++..+.-+|.+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~---~l~~~-----------~~~~-~ee~~~~~---------~~k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVS---FLEYR-----------RSFD-EEEQKKAE---------ALKLACHLNLAACYLKL 270 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHH---Hhhcc-----------ccCC-HHHHHHHH---------HHHHHHhhHHHHHHHhh
Confidence 5677788888888888887765 21111 1111 11111111 11234567788899999
Q ss_pred CChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHH-HHHHH
Q 048766 420 GEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA-SVMRN 496 (525)
Q Consensus 420 g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~ 496 (525)
+++.+|+...++. -.+++...+..-+.++...|+++.|+..|+++++++|+|..+-..|+.+-.+..++.+. .++|.
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 33566778888899999999999999999999999999999999999888877666555 78899
Q ss_pred HHHHc
Q 048766 497 FMRER 501 (525)
Q Consensus 497 ~~~~~ 501 (525)
.|...
T Consensus 351 ~mF~k 355 (397)
T KOG0543|consen 351 NMFAK 355 (397)
T ss_pred HHhhc
Confidence 88764
No 214
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.30 E-value=0.0011 Score=59.40 Aligned_cols=92 Identities=13% Similarity=-0.040 Sum_probs=69.1
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHH-h------CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc------CCCh
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIRE-L------GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLE------GDSD 472 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~-~------~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~ 472 (525)
..|..|...|.-.|++++|+..-+. + +.. .....+..+..++.-.|+++.|.+.|+..+.+. ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566777778888999999887653 1 221 224567778888888999999999999877543 1234
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
.....|+..|.-..+++.|+.++.+=
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 55778999999999999999988754
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.29 E-value=0.001 Score=53.24 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH-----cCCccCCcc
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE-----RGLRKEAGC 509 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 509 (525)
....++..+...|++++|+..+++++..+|.+...+..++.+|...|+..+|.++|+++.+ .|+.|.|.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4455677788899999999999999999999999999999999999999999999998853 577776543
No 216
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.27 E-value=0.19 Score=48.21 Aligned_cols=181 Identities=15% Similarity=0.120 Sum_probs=120.9
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhccCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHH
Q 048766 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRK---NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376 (525)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 376 (525)
++...|...+.--...|+.+.+.-+|+.+.-| -...|-..+.-....|+.+-|..++.+..+-. .|+......+-
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~--~k~~~~i~L~~ 372 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH--VKKTPIIHLLE 372 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc--CCCCcHHHHHH
Confidence 45667778888888899999999999888643 33456666666666699998888888776643 33333332333
Q ss_pred HHH-cCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHH---HHHHHh-CCCCchhHH----HHHHH
Q 048766 377 AAC-SHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQ---RMIREL-GFGSYGVVW----RALLS 446 (525)
Q Consensus 377 ~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~~~~~~~----~~l~~ 446 (525)
..+ -..|+ ++.|..+++.+..+ . |+ ...-..-+....+.|..+.+. +++... ....+.... ....+
T Consensus 373 a~f~e~~~n-~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 373 ARFEESNGN-FDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFAR 448 (577)
T ss_pred HHHHHhhcc-HHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHH
Confidence 333 34456 99999999999874 3 54 333344455667888888887 444333 222222222 22222
Q ss_pred -HHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 447 -ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 447 -~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
.+...++.+.|..++.++....|++...|..+.......+
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 3345789999999999999999988888988888876665
No 217
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.22 E-value=0.16 Score=46.27 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=75.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCc
Q 048766 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386 (525)
Q Consensus 307 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 386 (525)
.-+.-+...|+...|.++-.+..=|+-..|...+.+++..++|++-.++-.. . . ++..|..++.+|...|. .
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k-K--sPIGyepFv~~~~~~~~-~ 253 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K-K--SPIGYEPFVEACLKYGN-K 253 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C-C--CCCChHHHHHHHHHCCC-H
Confidence 3345556678888888888888778888888888888888888876665432 1 2 23667788888888887 7
Q ss_pred chHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHH
Q 048766 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431 (525)
Q Consensus 387 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (525)
.+|..++.++. +..-+..|.+.|++.+|.+.--+
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888776532 13446777888888888777555
No 218
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.22 E-value=0.01 Score=52.62 Aligned_cols=163 Identities=15% Similarity=0.142 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC---HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCC--C--Chh
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD---SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK--P--TVE 407 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~--~~~ 407 (525)
.|..+.+++.+..++.+++.+-..-....+..|. ......+..+....+. ++++++.|+...+-..-. | ...
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~-fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSV-FQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHH-HHHHHHHHHHHHHHhhccCCceeeee
Confidence 4555666666666666776666655544334442 1223345556666666 888888888766431111 1 245
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh-------CCCCc-----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc------C
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL-------GFGSY-----GVVWRALLSASGACSDLDVARISAAEVIKLE------G 469 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p 469 (525)
++..|...|.+..|+++|.-+..+. +...- ..+...+..++...|....|.+.-+++.++. |
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 6778888888888888887776654 21111 1234455667788899888988888887753 2
Q ss_pred CChhHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
-.......++++|...|+.+.|..-|+..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 23444667889999999998888777754
No 219
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.20 E-value=0.0048 Score=50.92 Aligned_cols=88 Identities=7% Similarity=0.130 Sum_probs=63.9
Q ss_pred CCcccHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccC----------------ChHHHHH
Q 048766 67 PSVVSWNSLISGYVQ-----SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG----------------SLQLGMA 125 (525)
Q Consensus 67 ~~~~~~~~ll~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~~ 125 (525)
.+-.+|..++..+.+ .|..+=....+..|.+-|+.-|..+|+.||+.+-+.. +-+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 455566666666543 3566666677778888888888888888888765421 3456788
Q ss_pred HHHHHHHcccCCCcchhhHHHHHHHhcCC
Q 048766 126 IHSKIVKYSLERGVVIANCLIDMYGKCGS 154 (525)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 154 (525)
++++|...|+-||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888888866553
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.20 E-value=0.00099 Score=46.49 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-------C-CCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-------G-FGSY-GVVWRALLSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
..+++.++..|...|++++|+..+++. + ..|+ ..++..++..+...|++++|++.+++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356778888888999999988888875 2 1122 456778888999999999999999998875
No 221
>PRK11906 transcriptional regulator; Provisional
Probab=97.18 E-value=0.0083 Score=55.76 Aligned_cols=159 Identities=11% Similarity=0.138 Sum_probs=97.4
Q ss_pred hHH--HHHHHHHHh-----cCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCC---CC-----CcchHHHHHHHhh
Q 048766 334 VTW--NAMITGYAR-----NGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHT---DI-----PFDKVSEYFESMT 397 (525)
Q Consensus 334 ~~~--~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---~~-----~~~~a~~~~~~~~ 397 (525)
..| ..++.+... ....+.|+.+|.+........|+ ...|..+...+... |- +..+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 555555443 12356788888888832227776 45555555543221 11 1334555555555
Q ss_pred hhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhH
Q 048766 398 KDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474 (525)
Q Consensus 398 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 474 (525)
.+.| |+.....++.++.-.|+++.|...|++. ...|+ ...|......+.-.|+.++|.+.++++++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3344 5667777777777778888888888886 44555 5566666777777888888888888888888854433
Q ss_pred --HHHHHHHHhhccChhHHHHHHH
Q 048766 475 --YVMLCNLYTSHGNWDVASVMRN 496 (525)
Q Consensus 475 --~~~l~~~~~~~g~~~~A~~~~~ 496 (525)
....++.|... ..++|+++|-
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHh
Confidence 22333345544 4666776664
No 222
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.14 E-value=0.0044 Score=53.16 Aligned_cols=89 Identities=17% Similarity=-0.000 Sum_probs=58.4
Q ss_pred HhccCChHHHHHHHHHh-CCCC----chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC---ChhHHHHHHHHHhhccC
Q 048766 416 MGQKGEVWRAQRMIREL-GFGS----YGVVWRALLSASGACSDLDVARISAAEVIKLEGD---SDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 416 ~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~ 487 (525)
+.+.|++.+|...|... ..-| .+..+..|+.++...|++++|...|..+.+-.|+ -|+++..|+.+..+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 34556677777777665 1111 1334445777777777777777777777776544 35667777777777777
Q ss_pred hhHHHHHHHHHHHcCCc
Q 048766 488 WDVASVMRNFMRERGLR 504 (525)
Q Consensus 488 ~~~A~~~~~~~~~~~~~ 504 (525)
.++|...|+++.+.-+.
T Consensus 231 ~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 231 TDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 77777777777766543
No 223
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.07 E-value=0.061 Score=47.02 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=31.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHh-h---HHHHHHHHcccCChHHHHHHHHHHHHc
Q 048766 75 LISGYVQSGKYRKALNLFVELERSEIYADAY-S---FTSALAACGQLGSLQLGMAIHSKIVKY 133 (525)
Q Consensus 75 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~---~~~ll~~~~~~~~~~~a~~~~~~~~~~ 133 (525)
....+...|++++|.+.|+.+... -|+.. . .-.+..++.+.+++++|...+++.++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334445566777777777776653 23221 1 123345556666666666666666665
No 224
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.06 E-value=0.12 Score=49.75 Aligned_cols=54 Identities=17% Similarity=0.065 Sum_probs=29.9
Q ss_pred HHHHHHHhccCchhhhhHH--HHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhc
Q 048766 7 FHLLRASSDLGWDTYCQQL--HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63 (525)
Q Consensus 7 ~~ll~~~~~~g~~~~a~~~--~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 63 (525)
+..=++|.+.+++.-..-+ ++.+.+.|-.|+.. .+...++-.|++.+|.++|.+
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHH
Confidence 3344455555544432222 33455666556653 345566677888888777764
No 225
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.03 E-value=0.021 Score=48.48 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=35.7
Q ss_pred CChHHHHHHHHHHHhhcCCChhH-----------------HHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 452 SDLDVARISAAEVIKLEGDSDYV-----------------YVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 452 ~~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+...+|...|+.+++..|+++.+ -...+..|.+.|.+..|..-++.+.+.-+
T Consensus 104 ~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 104 TSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 34456666777777766765422 23468889999999999999999887644
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0043 Score=56.13 Aligned_cols=92 Identities=12% Similarity=0.013 Sum_probs=75.3
Q ss_pred HHHHhccCChHHHHHHHHHh--------CCCC---------chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHH
Q 048766 413 IRLMGQKGEVWRAQRMIREL--------GFGS---------YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~--------~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 475 (525)
+..|.+.|++..|..-|+++ +.++ -..++..+...+.+.+++..|++...++++++|+|.-++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 44566777777777776663 1111 134566778888999999999999999999999999999
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 476 VMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
+.-+.++...|+++.|+..|+++++..+.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999987654
No 227
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.96 E-value=0.0091 Score=49.35 Aligned_cols=89 Identities=10% Similarity=0.136 Sum_probs=71.8
Q ss_pred CCCcccHHHHHHHHHh-----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccc----------------cchHHHH
Q 048766 229 SPNSSSWNSILTGYVN-----RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL----------------SALTWGM 287 (525)
Q Consensus 229 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~ 287 (525)
..+..+|..++..|.+ .|+.+=....++.|.+-|+.-|..+|+.|+..+=+. .+-+-++
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4566667777777664 577888888899999999999999999999887542 2456788
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHcCCC
Q 048766 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQ 317 (525)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 317 (525)
.++++|...|+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 899999999999999999999998876554
No 228
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.46 Score=46.95 Aligned_cols=331 Identities=11% Similarity=0.058 Sum_probs=171.9
Q ss_pred cccCCCcchhh-----HHHHHHHhcCCHHHHHHHHhhccCCC---hhhHHHHHHHHHhCCC---hHHHHHHHhcCCC--C
Q 048766 133 YSLERGVVIAN-----CLIDMYGKCGSVEDAIGVFGEMIDKD---IISWNSVIAASARNGN---LELAFGFLHRLPN--P 199 (525)
Q Consensus 133 ~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~--~ 199 (525)
.|++.+..-|. .+++-+...+.+..|+++-..+-.|. ...|.....-+.+..+ .+.+..+-+++.. -
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 34554444443 34666667777788887777775553 3445555555554422 2223333344433 3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCCC--------CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 048766 200 DTISYNEVINGIAQFGDIEDAIMILSSMPS--------PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271 (525)
Q Consensus 200 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 271 (525)
+..+|..+..-.-..|+.+-|..+++.-+. -+..-+..-+.-..+.|+.+....++-++... .+...+.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~ 582 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLF 582 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHH
Confidence 445666666666777888888777765432 11122333344445555555555555544432 1111111
Q ss_pred HHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHH-HHhcc-----CCCHhHHHHHHHHHHh
Q 048766 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM-FRSLC-----RKNLVTWNAMITGYAR 345 (525)
Q Consensus 272 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~-----~~~~~~~~~l~~~~~~ 345 (525)
..+ .+...|..+|....+..-. ..+-+.|-...+...+-.+ ++... .+-..........+.+
T Consensus 583 ~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~ 650 (829)
T KOG2280|consen 583 MTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAK 650 (829)
T ss_pred HHH------HhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhh
Confidence 111 1122233333333221100 0111122222222221111 11100 1111122222333333
Q ss_pred cCC----------hhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHH
Q 048766 346 NGD----------LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415 (525)
Q Consensus 346 ~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 415 (525)
... ..+-+.+.+.+..+-+..-...+.+--+.-+...|. ..+|.++-++.+ -||-..|..-+.+
T Consensus 651 sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~-~k~a~ql~~~Fk-----ipdKr~~wLk~~a 724 (829)
T KOG2280|consen 651 SKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQ-NKRAEQLKSDFK-----IPDKRLWWLKLTA 724 (829)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccc-hHHHHHHHHhcC-----CcchhhHHHHHHH
Confidence 222 122222333333321122334455666666777787 788888877664 5788888888889
Q ss_pred HhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHH
Q 048766 416 MGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 416 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (525)
+...+++++-+++-+... .+.-|..+..+|.+.|+.++|..++-+.-. .+ ....+|.+.|++.+|.++-
T Consensus 725 La~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 725 LADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC----hH----HHHHHHHHhccHHHHHHHH
Confidence 999999988877777643 366677788899999999999888765421 11 5678888888888887654
No 229
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.036 Score=48.39 Aligned_cols=100 Identities=10% Similarity=-0.046 Sum_probs=63.9
Q ss_pred CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhcc---CChHHHHHHHHHh-CCC-CchhHHH
Q 048766 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK---GEVWRAQRMIREL-GFG-SYGVVWR 442 (525)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~~~-~~~~~~~ 442 (525)
|...|..|..+|...|+ .+.|..-|....+. -.+++..+..+..++... .+..++..+|+++ ..+ .+..+..
T Consensus 155 d~egW~~Lg~~ym~~~~-~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGR-ASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcc-hhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 56667777777777777 77777777776642 123455555555554432 2345677777776 333 3455666
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 443 ALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 443 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
.|...+...|++.+|...++.+++..|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 6677777888888888888888887763
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.93 E-value=0.046 Score=52.97 Aligned_cols=160 Identities=15% Similarity=0.066 Sum_probs=99.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCCH-----hHHHHHHHHHcCC---CCCcchHHHHHHHhhhhhCCCCChhHHH
Q 048766 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDS-----VTFLNVLAACSHT---DIPFDKVSEYFESMTKDYGIKPTVEHCC 410 (525)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 410 (525)
++....=.||-+.+++.+.+..+.+++.-.. ..|...+..+... +.+.+.|.++++.+.+. -|+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHH
Confidence 3444444566667777666665543222211 2233333333332 33377888888888754 45544443
Q ss_pred -HHHHHHhccCChHHHHHHHHHhC-CC-----CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHH-HHHHH
Q 048766 411 -SMIRLMGQKGEVWRAQRMIRELG-FG-----SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVM-LCNLY 482 (525)
Q Consensus 411 -~l~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~ 482 (525)
.-++.+...|+.++|++.|++.- .. -....+..++..+....++++|.+.+.++.+....+...|.. .+-++
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34556677888888888888651 11 123445567777888899999999999999887765555553 44556
Q ss_pred hhccCh-------hHHHHHHHHHHHc
Q 048766 483 TSHGNW-------DVASVMRNFMRER 501 (525)
Q Consensus 483 ~~~g~~-------~~A~~~~~~~~~~ 501 (525)
...|+. ++|.+++.+....
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHH
Confidence 667877 8888888877543
No 231
>PRK11906 transcriptional regulator; Provisional
Probab=96.86 E-value=0.064 Score=50.10 Aligned_cols=120 Identities=11% Similarity=0.092 Sum_probs=72.7
Q ss_pred cchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhc---------cCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCC
Q 048766 386 FDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQ---------KGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSD 453 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~ 453 (525)
.+.|..+|.+......++|+ ...|..+...+.. ..+..+|.+..++. .. ..|+.....++.+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 56666677776633355664 3333333333221 22334455555544 22 3345555556666666666
Q ss_pred hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
++.|...|++++.++|+.+.++...++.+.-.|+.++|.+.+++..+..+..
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 7777777777777777777777777777777777777777777766655543
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.85 E-value=0.012 Score=54.66 Aligned_cols=66 Identities=9% Similarity=-0.144 Sum_probs=47.1
Q ss_pred CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhH---HHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV---YVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 436 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.+...+..+..+|.+.|++++|+..|+++++++|++..+ |.+++.+|...|+.++|+..+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345667777777777777777777777777777766643 777777777777777777777777664
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.013 Score=50.48 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=78.4
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCC-CChhHHHHHHHHHhccCChHHHHHHHHHh----CCCCc-hhHHHHH
Q 048766 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK-PTVEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSY-GVVWRAL 444 (525)
Q Consensus 371 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-~~~~~~l 444 (525)
.|+..+.. .+.|+ +..|...|....+.+.-. -.+..+..|++++...|++++|..+|..+ +..|. +..+..+
T Consensus 144 ~Y~~A~~~-~ksgd-y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDL-YKSGD-YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HHcCC-HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 45555544 45566 899999999888753111 13556777899999999999999999876 33343 4677778
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
+....+.|+.++|...|+++.+-.|+.+.+-.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 88888999999999999999999997766544
No 234
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.83 E-value=0.67 Score=46.90 Aligned_cols=115 Identities=10% Similarity=-0.042 Sum_probs=60.5
Q ss_pred cCChhHHHHHHHHHhhCCCCCCCH--hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChH
Q 048766 346 NGDLTKVIELFEQLKTVRDLQPDS--VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW 423 (525)
Q Consensus 346 ~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 423 (525)
..+.+.|..++..........+.. .....+.......+. .+++...++..... ..+......-++.-.+.++++
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~-~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDV-TDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccC-CHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHH
Confidence 445677777777664433233322 223333333344332 35666666554322 223344444455555777777
Q ss_pred HHHHHHHHhC--CCCchhHHHHHHHHHhcCCChHHHHHHHHHH
Q 048766 424 RAQRMIRELG--FGSYGVVWRALLSASGACSDLDVARISAAEV 464 (525)
Q Consensus 424 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 464 (525)
.+...+..|+ ......-..-++.++...|+.++|...|+++
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777762 1112233334556655677777777777776
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.83 E-value=0.27 Score=42.19 Aligned_cols=59 Identities=17% Similarity=0.018 Sum_probs=46.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcCCChh---HHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 443 ALLSASGACSDLDVARISAAEVIKLEGDSDY---VYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 443 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.+..-|.+.|.+..|..-++++++.-|+.+. ++..+..+|.+.|-.++|...-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3566788999999999999999998776554 4556778899999999998876555443
No 236
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.81 E-value=0.21 Score=41.36 Aligned_cols=179 Identities=16% Similarity=0.121 Sum_probs=101.1
Q ss_pred cCCCHHHHHHHHHhcc--CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchH
Q 048766 314 KCGQVEIADSMFRSLC--RK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKV 389 (525)
Q Consensus 314 ~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a 389 (525)
..|-+..|+-=|.+.. .| -+..||-+.--+...|+++.|.+.|+...+ +.|. ..+...-.-++...|+ +.-|
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E---LDp~y~Ya~lNRgi~~YY~gR-~~LA 152 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAHLNRGIALYYGGR-YKLA 152 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc---cCCcchHHHhccceeeeecCc-hHhh
Confidence 3344455554444433 34 356788888888899999999999999988 6674 2333222334555677 8888
Q ss_pred HHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
.+-+...-..-.-+|-...|..+. ...-++.+|..-+.+--...+..-|...+-.+. .|+.. ...+++++.+-..
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~ 227 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY-LGKIS-EETLMERLKADAT 227 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhcc
Confidence 876666554312222222222222 234467777665544211223333333222221 12221 1233344433222
Q ss_pred CC-------hhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 470 DS-------DYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 470 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
++ .++|+.|+.-+...|+.++|..+|+.....
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 22 467889999999999999999999866543
No 237
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.23 Score=41.98 Aligned_cols=87 Identities=9% Similarity=-0.012 Sum_probs=53.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh-------CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhh----cCCChhHH
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL-------GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKL----EGDSDYVY 475 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~ 475 (525)
.+....+.+.+..++++|...+.+- ..-++ -..+...+..+....|+..|..+++.--.. +|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 3445556677777777776666543 11112 123444555566677888888888875553 36677777
Q ss_pred HHHHHHHhhccChhHHHHHH
Q 048766 476 VMLCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~ 495 (525)
..|+.+|- .||.+++..++
T Consensus 232 enLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhc-cCCHHHHHHHH
Confidence 77777764 56777666554
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.74 E-value=0.043 Score=42.43 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHhhcCCChhH
Q 048766 454 LDVARISAAEVIKLEGDSDYV 474 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p~~~~~ 474 (525)
...|...|+++++.-|++..+
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHHHHCcCChhH
Confidence 668888889999988976544
No 239
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.77 Score=46.12 Aligned_cols=177 Identities=12% Similarity=0.051 Sum_probs=120.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHhcCCCCCcc---cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHccc
Q 048766 41 STALMGFYRKINSLADAHKMFVEIPQPSVV---SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117 (525)
Q Consensus 41 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 117 (525)
...-+..+.+...++-|+.+...-..+... ........+.+.|++++|...|-+-... +.| ..++.-+...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 345677777788888888877655432111 2233344566789999999888776542 223 2355666666
Q ss_pred CChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChh--hHHHHHHHHHhCCChHHHHHHHhc
Q 048766 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII--SWNSVIAASARNGNLELAFGFLHR 195 (525)
Q Consensus 118 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~ 195 (525)
.+...-..+++.+.+.|+ .+...-+.|+.+|.+.++.++-.+..+... .+.. -....+..+.+.+-.++|..+-.+
T Consensus 411 q~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 777777788899999885 455566889999999999999988887776 2222 245667777777777877777666
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC
Q 048766 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229 (525)
Q Consensus 196 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 229 (525)
... +... +-..+-..+++++|.+.+..++-
T Consensus 489 ~~~-he~v---l~ille~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 489 FKK-HEWV---LDILLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred hcc-CHHH---HHHHHHHhcCHHHHHHHHhcCCH
Confidence 543 2222 23334456889999999988863
No 240
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.71 Score=45.70 Aligned_cols=352 Identities=14% Similarity=0.099 Sum_probs=178.8
Q ss_pred HHhcCChHHHHHHHHHHH--------hcCCCCCHhhHHHH-----HHHHcccCChHHHHHHHHHHHHcccCCCcchhhHH
Q 048766 79 YVQSGKYRKALNLFVELE--------RSEIYADAYSFTSA-----LAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145 (525)
Q Consensus 79 ~~~~~~~~~A~~~~~~m~--------~~~~~p~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 145 (525)
+.+..++++-..+.+.+. .-|++.+..-|..+ |.-+...+.+..|.++-..+...-.. ...+|...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHH
Confidence 344555665555444432 34677666666544 45556677888888887776332111 14677777
Q ss_pred HHHHHhcC---CHHHHHHHHhhccC--CChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcc--------hHHHHHHHHH
Q 048766 146 IDMYGKCG---SVEDAIGVFGEMID--KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI--------SYNEVINGIA 212 (525)
Q Consensus 146 ~~~~~~~g---~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~ 212 (525)
...+.+.. +.+-+..+-+++.. ....+|..+.......|+++-|..+++.=+....+ -+...+.-..
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 77777663 33334444445544 35567888888888999999999988875433222 1222333334
Q ss_pred hcCChHHHHHHHhcCCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHH
Q 048766 213 QFGDIEDAIMILSSMPS-PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291 (525)
Q Consensus 213 ~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 291 (525)
+.|+.+-...++-.+.. .+... .+.-..+...|..+|.+..+.. +..+ +-..|....+....-.+.-
T Consensus 558 es~d~~Li~~Vllhlk~~~~~s~------l~~~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~ 625 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNKLNRSS------LFMTLRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHL 625 (829)
T ss_pred hcCCchhHHHHHHHHHHHHHHHH------HHHHHHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhh
Confidence 44444444443333221 00000 1111233445556665544421 1111 1111212222221111111
Q ss_pred HH-HHh-CCCchHHHHHHHHHHHHcCCCHHHHHH----------HHHhcc-C----CCHhHHHHHHHHHHhcCChhHHHH
Q 048766 292 CV-IKQ-GLDASIVVASALLDMYSKCGQVEIADS----------MFRSLC-R----KNLVTWNAMITGYARNGDLTKVIE 354 (525)
Q Consensus 292 ~~-~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~----------~~~~~~-~----~~~~~~~~l~~~~~~~~~~~~a~~ 354 (525)
+- ... .+.+-..........+.+.....-..+ +.+.+. + -...+.+--+.-+...|+..+|.+
T Consensus 626 q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~q 705 (829)
T KOG2280|consen 626 QASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQ 705 (829)
T ss_pred hhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHH
Confidence 11 000 011222222333344444433221111 111111 0 111234444555666777777777
Q ss_pred HHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCC
Q 048766 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434 (525)
Q Consensus 355 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (525)
+-.+. .-||...|..-+.++...++ +++..++-+... ++.-|...+..+.+.|+.++|.+.+.+.+.
T Consensus 706 l~~~F-----kipdKr~~wLk~~aLa~~~k-weeLekfAkskk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~ 772 (829)
T KOG2280|consen 706 LKSDF-----KIPDKRLWWLKLTALADIKK-WEELEKFAKSKK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG 772 (829)
T ss_pred HHHhc-----CCcchhhHHHHHHHHHhhhh-HHHHHHHHhccC-------CCCCchhHHHHHHhcccHHHHhhhhhccCC
Confidence 76665 35677777777777777777 766666554332 244566667777788888888888777642
Q ss_pred CCchhHHHHHHHHHhcCCChHHHHHHHH
Q 048766 435 GSYGVVWRALLSASGACSDLDVARISAA 462 (525)
Q Consensus 435 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 462 (525)
.+ ....+|.+.|++.+|.+..-
T Consensus 773 l~------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 773 LQ------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hH------HHHHHHHHhccHHHHHHHHH
Confidence 22 34556667777777766543
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.19 Score=43.96 Aligned_cols=168 Identities=12% Similarity=0.037 Sum_probs=99.6
Q ss_pred HHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhh
Q 048766 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398 (525)
Q Consensus 320 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 398 (525)
...+.++++..+....--.-.......|++.+|..+|+..... .| +......+..++...|+ .+.|..++..+-.
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~-~e~A~~iL~~lP~ 196 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGD-VEAAQAILAALPL 196 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCC-hHHHHHHHHhCcc
Confidence 3344444444332221122233456677888888888877773 33 34555567777777787 8888888876643
Q ss_pred hhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhc--CCChhHH
Q 048766 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLE--GDSDYVY 475 (525)
Q Consensus 399 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~ 475 (525)
+ --.........-+..+.+.....+...+-.++...| |...-..+...+...|+.+.|.+.+-.+++.+ -.+..+-
T Consensus 197 ~-~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~R 275 (304)
T COG3118 197 Q-AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEAR 275 (304)
T ss_pred c-chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHH
Confidence 2 111111112233455555555555555555553345 55666677777888888888888887777764 4566777
Q ss_pred HHHHHHHhhccChhHHH
Q 048766 476 VMLCNLYTSHGNWDVAS 492 (525)
Q Consensus 476 ~~l~~~~~~~g~~~~A~ 492 (525)
..++.++...|.-+.+-
T Consensus 276 k~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 276 KTLLELFEAFGPADPLV 292 (304)
T ss_pred HHHHHHHHhcCCCCHHH
Confidence 77787777777544433
No 242
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.68 E-value=0.22 Score=45.87 Aligned_cols=90 Identities=9% Similarity=0.004 Sum_probs=49.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC-------CcccHHHHHHHHHh---cCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 048766 206 EVINGIAQFGDIEDAIMILSSMPSP-------NSSSWNSILTGYVN---RNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275 (525)
Q Consensus 206 ~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 275 (525)
.++-+|....+++.-+++.+.+... ....-....-++.+ .|+.++|++++..+......+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444455555555555555555431 11111223344455 7788888888888666656777777777665
Q ss_pred Hhcc---------ccchHHHHHHHHHHHH
Q 048766 276 GIAG---------LSALTWGMLIHSCVIK 295 (525)
Q Consensus 276 ~~~~---------~~~~~~a~~~~~~~~~ 295 (525)
.|-. ....++|...|.+..+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 5421 2234555555554443
No 243
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.67 E-value=0.0051 Score=34.49 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 439 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
..|..++..+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777888888888888888888888754
No 244
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.50 E-value=0.0055 Score=34.37 Aligned_cols=32 Identities=19% Similarity=0.082 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 439 VVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 439 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
.+|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677778888888888888888888888885
No 245
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.42 E-value=0.054 Score=40.59 Aligned_cols=88 Identities=16% Similarity=0.125 Sum_probs=45.8
Q ss_pred HHhccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc-CCCh---hHHHHHHHHHhhccCh
Q 048766 415 LMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLE-GDSD---YVYVMLCNLYTSHGNW 488 (525)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~~ 488 (525)
++...|+.+.|++.|.+. ..- ..+..|+.-..++.-+|+.++|+.-+.+++++. |... .+|.--+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344555666666655553 212 234455555555555666666666666666553 2221 2244445555556666
Q ss_pred hHHHHHHHHHHHcC
Q 048766 489 DVASVMRNFMRERG 502 (525)
Q Consensus 489 ~~A~~~~~~~~~~~ 502 (525)
+.|+.-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66665555555444
No 246
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.35 E-value=0.61 Score=40.51 Aligned_cols=192 Identities=15% Similarity=0.075 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcc-----CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH-hHHHHHH
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLC-----RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS-VTFLNVL 376 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~ 376 (525)
.........+...+.+..+...+.... ......+......+...+++..+.+.+....... ++. .......
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 136 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD---PDPDLAEALLA 136 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC---CCcchHHHHHH
Confidence 334444444555555555555444432 1223344444445555555566666666555522 221 1111112
Q ss_pred H-HHcCCCCCcchHHHHHHHhhhhhCCCC----ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc--hhHHHHHHHHH
Q 048766 377 A-ACSHTDIPFDKVSEYFESMTKDYGIKP----TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY--GVVWRALLSAS 448 (525)
Q Consensus 377 ~-~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--~~~~~~l~~~~ 448 (525)
. .+...+. ++.+...+..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+
T Consensus 137 ~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 137 LGALYELGD-YEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHHHcCC-HHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 2 4555555 6666666665532 122 2222333333344556666666666654 22222 34455555555
Q ss_pred hcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 449 GACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 449 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
...++++.|...+..+....|.....+..++..+...|.++++...+.+..+.
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56666666666666666666644445555555555555566666666555443
No 247
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.35 E-value=1.1 Score=43.37 Aligned_cols=181 Identities=10% Similarity=0.077 Sum_probs=104.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 048766 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNS---SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276 (525)
Q Consensus 200 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 276 (525)
+..+|...+......|+.+.+.-+|++..-|-. ..|--.+.-....|+.+-|..++....+--++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 345677777777788888888888877653221 23444444444557777777776655554333333333222333
Q ss_pred hccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHH---HHHHhcc--CCCHhHHHHHHHH-----HHhc
Q 048766 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD---SMFRSLC--RKNLVTWNAMITG-----YARN 346 (525)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~--~~~~~~~~~l~~~-----~~~~ 346 (525)
....|+++.|..+++.+.+.- +.-..+-..-+....+.|+.+.+. +++.... +.+......+.-- +.-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 456678888888888887665 333444444556666777777776 4443333 2222222222222 2235
Q ss_pred CChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCC
Q 048766 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 383 (525)
++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 455 ~d~~~a~~~l~~~~~~--~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDI--LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhc--CCccHHHHHHHHHHHHhCC
Confidence 7788888888888773 3445566666666555443
No 248
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.34 E-value=0.09 Score=41.94 Aligned_cols=70 Identities=17% Similarity=0.351 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhh----hhCCCCChhH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTK----DYGIKPTVEH 408 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 408 (525)
....++..+...|+++.|+.+++++.. ..| +...+..++.++...|+ ...|.+.|+.+.+ +.|+.|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~---~dP~~E~~~~~lm~~~~~~g~-~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA---LDPYDEEAYRLLMRALAAQGR-RAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH---HSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344556666778888888888888877 455 56777788888888887 8888877776543 2366666554
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.21 Score=43.60 Aligned_cols=142 Identities=8% Similarity=0.046 Sum_probs=96.5
Q ss_pred HHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHH
Q 048766 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430 (525)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (525)
...+++++... .+....+ .-.......|+ +.+|...|+..... .+-+......++++|...|+.+.|..++.
T Consensus 121 qlr~~ld~~~~----~~~e~~~-~~~~~~~~~e~-~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~ 192 (304)
T COG3118 121 QLRQFLDKVLP----AEEEEAL-AEAKELIEAED-FGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILA 192 (304)
T ss_pred HHHHHHHHhcC----hHHHHHH-HHhhhhhhccc-hhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHH
Confidence 44455555432 2333333 33334566777 99999999988753 23346677788999999999999999999
Q ss_pred HhCCCCchhHHHH---HHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 431 ELGFGSYGVVWRA---LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 431 ~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.++..-....+.. -+..+.+..+..+. ..+++-...+|+|...-..|+..+...|+.++|.+.+=.+..+
T Consensus 193 ~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 193 ALPLQAQDKAAHGLQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred hCcccchhhHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9854444333333 23333333333332 2344556678999999999999999999999999988777665
No 250
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.27 E-value=0.33 Score=36.67 Aligned_cols=140 Identities=19% Similarity=0.133 Sum_probs=83.5
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChH
Q 048766 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW 423 (525)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 423 (525)
.-.|..++..++..+.... .+..-++.++--....-+ -+-..+.++.+-+- .|. ..+|+..
T Consensus 13 ildG~V~qGveii~k~v~S----sni~E~NWvICNiiDaa~-C~yvv~~LdsIGki----FDi----------s~C~NlK 73 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS----SNIKEYNWVICNIIDAAD-CDYVVETLDSIGKI----FDI----------SKCGNLK 73 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH----S-HHHHTHHHHHHHHH---HHHHHHHHHHHGGG----S-G----------GG-S-TH
T ss_pred HHhchHHHHHHHHHHHcCc----CCccccceeeeecchhhc-hhHHHHHHHHHhhh----cCc----------hhhcchH
Confidence 3467778888888877662 244455555544444444 55555666555432 222 1234444
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 424 RAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 424 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.....+-.++ .+.......+.....+|+-+.-.+++..+.+.+..+|..+..++.+|.+.|+..++.+++.+.-++|+
T Consensus 74 rVi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 74 RVIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 4444444432 34445566677788889999999999988865544889999999999999999999999999999887
Q ss_pred c
Q 048766 504 R 504 (525)
Q Consensus 504 ~ 504 (525)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.25 E-value=0.018 Score=43.04 Aligned_cols=57 Identities=19% Similarity=0.018 Sum_probs=53.0
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
..+....|+.+.|++.|.+++.+-|.++++|+.-+.++.-+|+.++|+.-+++..+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 456778999999999999999999999999999999999999999999999988774
No 252
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.14 E-value=0.039 Score=44.81 Aligned_cols=101 Identities=5% Similarity=-0.050 Sum_probs=56.5
Q ss_pred HHcCCCCCcchHHHHHHHhhhhhCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhc
Q 048766 378 ACSHTDIPFDKVSEYFESMTKDYGIKPT-----VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGA 450 (525)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~ 450 (525)
-+...|+ +++|..-|..+... .++. ...|..-+.++.+.+.++.|+.-..+. ...|. ...+..-..+|-+
T Consensus 104 ~~F~ngd-yeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGD-YEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred Hhhhccc-HHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 3555666 77777777666642 2222 223334444556666777666666554 33343 2233333455666
Q ss_pred CCChHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 048766 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNL 481 (525)
Q Consensus 451 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 481 (525)
...+++|++-|+++++.+|....+....+++
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 6677777777777777777655555544444
No 253
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.11 E-value=0.067 Score=40.96 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=29.0
Q ss_pred CCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHH
Q 048766 365 LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414 (525)
Q Consensus 365 ~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 414 (525)
..|+..+..+++.+|+..++ +..|.++++...+.++++.+...|..|++
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~-i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGD-IFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45556666666666665555 66666666666666555555555555544
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.10 E-value=0.13 Score=48.36 Aligned_cols=56 Identities=14% Similarity=0.001 Sum_probs=33.7
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-CCCC---chhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-GFGS---YGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
..+.....+.|+.++|++.++++ ...| ...+...|+.++...+.+.++..++.+--
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 44555566667777777777666 2222 12345566666677777777777666653
No 255
>PRK15331 chaperone protein SicA; Provisional
Probab=96.04 E-value=0.073 Score=42.23 Aligned_cols=84 Identities=12% Similarity=0.087 Sum_probs=38.3
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCHhHHHH-HHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCC
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLN-VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGE 421 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 421 (525)
+...|++++|..+|+-+.. ..|...-|.. |...+...+. +++|+..|...... . .-|+..+...+..|...|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~---~d~~n~~Y~~GLaa~~Q~~k~-y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCI---YDFYNPDYTMGLAAVCQLKKQ-FQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCC
Confidence 3445555555555555555 3332222322 2222333333 55555555544322 1 1233333444555555555
Q ss_pred hHHHHHHHHHh
Q 048766 422 VWRAQRMIREL 432 (525)
Q Consensus 422 ~~~A~~~~~~~ 432 (525)
.++|...|+..
T Consensus 121 ~~~A~~~f~~a 131 (165)
T PRK15331 121 AAKARQCFELV 131 (165)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 256
>PRK09687 putative lyase; Provisional
Probab=96.01 E-value=1.1 Score=40.21 Aligned_cols=136 Identities=13% Similarity=0.046 Sum_probs=62.9
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHH
Q 048766 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411 (525)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 411 (525)
+..+-...+.++.+.++ +.++..+-.+.+ .+|...-...+.++...+.....+...+..+.. .++..+-..
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~ 211 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIE 211 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHH
Confidence 33333444444445444 344444444443 233333334444444432112344444444442 344455555
Q ss_pred HHHHHhccCChHHHHHHH-HHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 412 MIRLMGQKGEVWRAQRMI-RELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 412 l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
.+.++++.|+.. |+..+ +.+.. ++ .....+.++...|+. +|+..+.++.+..| |+.+.....+++
T Consensus 212 A~~aLg~~~~~~-av~~Li~~L~~-~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~ 277 (280)
T PRK09687 212 AIIGLALRKDKR-VLSVLIKELKK-GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDKL 277 (280)
T ss_pred HHHHHHccCChh-HHHHHHHHHcC-Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHHH
Confidence 556666666533 33333 33321 22 223455556666664 56677777666666 455444444443
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.99 E-value=0.58 Score=36.93 Aligned_cols=87 Identities=11% Similarity=0.031 Sum_probs=55.0
Q ss_pred hHHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 048766 5 VLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84 (525)
Q Consensus 5 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~ 84 (525)
....++..+...+.......+++.+...+ +.++..++.++..|++.+ ..+..+.++. ..+......+++.|.+.+-
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCc
Confidence 34567777777777888888888877776 467777888888887643 3444444442 2233334446666666666
Q ss_pred hHHHHHHHHHH
Q 048766 85 YRKALNLFVEL 95 (525)
Q Consensus 85 ~~~A~~~~~~m 95 (525)
++++.-++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 66666666554
No 258
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.96 E-value=4.1 Score=46.44 Aligned_cols=318 Identities=12% Similarity=0.093 Sum_probs=182.5
Q ss_pred HHHHHHHhCCChHHHHHHHhcC----CC--CCcchHHHHHHHHHhcCChHHHHHHHhc-CCCCCcccHHHHHHHHHhcCC
Q 048766 175 SVIAASARNGNLELAFGFLHRL----PN--PDTISYNEVINGIAQFGDIEDAIMILSS-MPSPNSSSWNSILTGYVNRNR 247 (525)
Q Consensus 175 ~l~~~~~~~~~~~~a~~~~~~~----~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 247 (525)
.+..+-.+.+.+..|...+++- .+ .....+..+...|...+++|....+... ..+|+ ....|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 5556677788899999988883 11 1223344555589999998888877763 33343 3344556678899
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 048766 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327 (525)
Q Consensus 248 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 327 (525)
+..|...|+.+.+.+ ++...++..++......+.++......+-......+-....++.-+.+--+.++++..+....
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 999999999998874 344667777777777777777776655544433322223334444555577888888777766
Q ss_pred ccCCCHhHHHHH--HHHHHh--cCChhHHHHHHHHHhhCCCCCCC---------HhHHHHHHHHHcCCCCCcchHHHHHH
Q 048766 328 LCRKNLVTWNAM--ITGYAR--NGDLTKVIELFEQLKTVRDLQPD---------SVTFLNVLAACSHTDIPFDKVSEYFE 394 (525)
Q Consensus 328 ~~~~~~~~~~~l--~~~~~~--~~~~~~a~~~~~~~~~~~~~~p~---------~~~~~~l~~~~~~~~~~~~~a~~~~~ 394 (525)
..+..+|... +..+.+ ..|.-.-.+..+.+++.- +.|- ...|..++....-.. .+.-.+.+.
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~-i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e--l~~~~~~l~ 1617 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELV-IENLSACSIEGSYVRSYEILMKLHLLLE--LENSIEELK 1617 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHh-hhhHHHhhccchHHHHHHHHHHHHHHHH--HHHHHHHhh
Confidence 4555555554 222222 222222223333333321 1110 122222222222111 111111111
Q ss_pred HhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh----CCC-----CchhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 395 SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL----GFG-----SYGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
..........+...|..-+..-....+..+-+--+++. ... .-...|....+.....|.++.|...+-++.
T Consensus 1618 ~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1618 KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence 11110011112222222222111112222222222221 112 225688889999999999999999999998
Q ss_pred hhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 466 KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 466 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
+..+ +.++...+..++..|+...|+.++++..+...+
T Consensus 1698 e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1698 ESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred hccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 8884 788999999999999999999999999876553
No 259
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.87 E-value=1.1 Score=38.92 Aligned_cols=219 Identities=15% Similarity=0.056 Sum_probs=144.3
Q ss_pred CChhHHHHHHHHHhhCCCC-CCHHHHHHHHHHhccccchHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHcCCCHHHHHH
Q 048766 246 NRVPEALHLFGEMQSKDVP-MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADS 323 (525)
Q Consensus 246 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 323 (525)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444455555554443211 12455555566666667777766666666542 334455566666677777777888888
Q ss_pred HHHhccC--CCH-hHHHHHHH-HHHhcCChhHHHHHHHHHhhCCCCCC----CHhHHHHHHHHHcCCCCCcchHHHHHHH
Q 048766 324 MFRSLCR--KNL-VTWNAMIT-GYARNGDLTKVIELFEQLKTVRDLQP----DSVTFLNVLAACSHTDIPFDKVSEYFES 395 (525)
Q Consensus 324 ~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 395 (525)
.+..... ++. ........ .+...|+++.+...+.+... ..| ....+......+...+. .+.+...+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~ 192 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGR-YEEALELLEK 192 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcC-HHHHHHHHHH
Confidence 8877763 222 22333333 68889999999999999866 333 23334444444566777 8999999998
Q ss_pred hhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 396 MTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 396 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
.... ... ....+..+...+...+++++|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 193 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 193 ALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8753 233 3677888888899999999999999887 33444 445555555555777899999999999999985
No 260
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=1 Score=38.04 Aligned_cols=19 Identities=11% Similarity=-0.076 Sum_probs=10.2
Q ss_pred cCCChHHHHHHHHHHHhhc
Q 048766 450 ACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 450 ~~~~~~~A~~~~~~~~~~~ 468 (525)
..+++.+|+.+|+++....
T Consensus 166 ~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555443
No 261
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.61 E-value=0.032 Score=31.12 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
+|..++..+...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777788888888888888888888874
No 262
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.56 E-value=0.9 Score=43.61 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=35.8
Q ss_pred HHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHH
Q 048766 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289 (525)
Q Consensus 210 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 289 (525)
...+.|+++.|.++.++.. +...|..|.....+.|+++-|.+.|.+..+ +..|+-.|...|+.+....+
T Consensus 327 LAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp HHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred HHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHH
Confidence 3344555555555554442 334555555555555666555555554432 23333334444444444444
Q ss_pred HHHHHHhC
Q 048766 290 HSCVIKQG 297 (525)
Q Consensus 290 ~~~~~~~~ 297 (525)
.+.....|
T Consensus 396 ~~~a~~~~ 403 (443)
T PF04053_consen 396 AKIAEERG 403 (443)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcc
Confidence 44444333
No 263
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.55 E-value=0.8 Score=44.58 Aligned_cols=116 Identities=16% Similarity=0.040 Sum_probs=62.3
Q ss_pred CChhHHHHHHHHHhhCCCCCCCHhHHHHHHH-HHcCCCCCcchHHHHHHHhhhhh-CC-CCChhHHHHHHHHHhccCChH
Q 048766 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLA-ACSHTDIPFDKVSEYFESMTKDY-GI-KPTVEHCCSMIRLMGQKGEVW 423 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~~a~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~ 423 (525)
.+.+.|.++++.+.+ .-|+...|...-. .+...|+ +++|++.|++..... .. +.....+.-++..+.-.++++
T Consensus 247 ~~~~~a~~lL~~~~~---~yP~s~lfl~~~gR~~~~~g~-~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 247 VPLEEAEELLEEMLK---RYPNSALFLFFEGRLERLKGN-LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHhcC-HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 455667777777766 4566555544333 3344455 777777777544210 11 112334455566667777777
Q ss_pred HHHHHHHHh-CCCCchhHHHHHHHH--HhcCCCh-------HHHHHHHHHHHh
Q 048766 424 RAQRMIREL-GFGSYGVVWRALLSA--SGACSDL-------DVARISAAEVIK 466 (525)
Q Consensus 424 ~A~~~~~~~-~~~~~~~~~~~l~~~--~~~~~~~-------~~A~~~~~~~~~ 466 (525)
+|.+.|..+ ....-...+..++.+ +...|+. ++|.++++++-.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 777777776 222222333222222 2345666 666666666554
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.18 Score=44.60 Aligned_cols=162 Identities=7% Similarity=-0.117 Sum_probs=115.5
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHH----HHHHHHhcc
Q 048766 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC----SMIRLMGQK 419 (525)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~ 419 (525)
.-.|+..+|...++++.+. .+.|...+...=.+|...|+ ...-...++++.. ...++...|. .+..++..+
T Consensus 114 ~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~-~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGN-QIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccc-hhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHh
Confidence 4578888999999998884 35577778888888999998 8888888888875 3456654443 344556789
Q ss_pred CChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC-C---hhHHHHHHHHHhhccChhHHHH
Q 048766 420 GEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLEGD-S---DYVYVMLCNLYTSHGNWDVASV 493 (525)
Q Consensus 420 g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~---~~~~~~l~~~~~~~g~~~~A~~ 493 (525)
|-+++|.+.-++. .++ .|.....+....+...|++.++.+...+--..-.. . ...|-..+..+...+.++.|++
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999999887 333 34555566666777789999998887654332111 1 2234566777888899999999
Q ss_pred HHHHHHHcCCccCCccc
Q 048766 494 MRNFMRERGLRKEAGCS 510 (525)
Q Consensus 494 ~~~~~~~~~~~~~~~~~ 510 (525)
+|++=.-....++.+.+
T Consensus 269 IyD~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHHHHhhccchhh
Confidence 99976666666666533
No 265
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.53 E-value=2.1 Score=40.06 Aligned_cols=149 Identities=8% Similarity=-0.021 Sum_probs=82.8
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC--h
Q 048766 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP---DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT--V 406 (525)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 406 (525)
...+|..++..+.+.|.++.|...+.++...+ ..+ .+.....-+..+...|+ ..+|...++..... .+... .
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~-~~~~~~~~~v~~e~akllw~~g~-~~~Ai~~L~~~~~~-~~~~~~~~ 221 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLN-PSSESLLPRVFLEYAKLLWAQGE-QEEAIQKLRELLKC-RLSKNIDS 221 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccC-CcccCCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHHH-Hhhhcccc
Confidence 44567778888888888888888888877633 111 23334445556666777 78888887777652 11111 1
Q ss_pred hHHHHHHHHHhccCChHHHHHH-HHHhCCCCchhHHHHHHHHHhcC------CChHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRM-IRELGFGSYGVVWRALLSASGAC------SDLDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
.....+...+.. ..+..... ........-...+..++..+... ++.+++...|.++.+..|....+|..++
T Consensus 222 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 222 ISNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred ccHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 111111111000 00000000 00000000122333334434344 8899999999999999998888898888
Q ss_pred HHHhhc
Q 048766 480 NLYTSH 485 (525)
Q Consensus 480 ~~~~~~ 485 (525)
..+.+.
T Consensus 300 ~~~~~~ 305 (352)
T PF02259_consen 300 LFNDKL 305 (352)
T ss_pred HHHHHH
Confidence 887654
No 266
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.35 E-value=0.037 Score=33.21 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
|.++..++.+|.+.|++++|+++++++++..+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 467889999999999999999999999998664
No 267
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.35 E-value=2.4 Score=39.55 Aligned_cols=129 Identities=15% Similarity=0.109 Sum_probs=97.1
Q ss_pred hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhC-CCCChhHHHHHHHHHhccCChHHHHHHHHH-hCCCCc-hhHHHHHHH
Q 048766 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYG-IKPTVEHCCSMIRLMGQKGEVWRAQRMIRE-LGFGSY-GVVWRALLS 446 (525)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~ 446 (525)
..|...+.+..+... ++.|..+|-++.+. + +.+++..+++++..++ .|++.-|-.+|+- +..-|| +......+.
T Consensus 398 ~v~C~~~N~v~r~~G-l~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRG-LEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhh-HHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 445666777666666 99999999999887 6 6778899999988765 6888999999985 433344 444466677
Q ss_pred HHhcCCChHHHHHHHHHHHhhcCCC--hhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 447 ASGACSDLDVARISAAEVIKLEGDS--DYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 447 ~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.+...+|-+.|..+|+..++.-.++ ...|..++.--..-|+...+..+=+++.+.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 7788899999999999776533222 567888888888889888887777766553
No 268
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.34 E-value=0.15 Score=43.94 Aligned_cols=98 Identities=8% Similarity=0.089 Sum_probs=75.3
Q ss_pred HHHHhcCC--CCCcccHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccC------------
Q 048766 58 HKMFVEIP--QPSVVSWNSLISGYVQS-----GKYRKALNLFVELERSEIYADAYSFTSALAACGQLG------------ 118 (525)
Q Consensus 58 ~~~~~~~~--~~~~~~~~~ll~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------ 118 (525)
...|...+ +.|-.+|-..+..+... +..+--...++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 45555555 36777787777776543 566777778889999999999999999999876532
Q ss_pred ----ChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCH
Q 048766 119 ----SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155 (525)
Q Consensus 119 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 155 (525)
+-+-+.+++++|...|+-||..+-..|++++.+.+..
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2244778899999999999999999999998877753
No 269
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.29 E-value=0.33 Score=46.49 Aligned_cols=158 Identities=15% Similarity=0.054 Sum_probs=76.4
Q ss_pred HHhccCchhhhhHHHHHH-HHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHH
Q 048766 12 ASSDLGWDTYCQQLHCYI-LKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALN 90 (525)
Q Consensus 12 ~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~ 90 (525)
...-.|+++.+.++...- +-..++ ....+.++..+-+.|-.+.|+++...- ..-.....+.|+.+.|.+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALE 339 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHH
Confidence 344567777766665411 111112 334667777777778888777765421 223334445666666665
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCCh
Q 048766 91 LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI 170 (525)
Q Consensus 91 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 170 (525)
+.++ .++...|..|.....+.|+++-|++.+.+.. -+..|+-.|.-.|+.+...++.+.....+.
T Consensus 340 ~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 340 IAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 5432 2245566666666666666666666665432 233444555556666555555544433322
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHhcC
Q 048766 171 ISWNSVIAASARNGNLELAFGFLHRL 196 (525)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 196 (525)
++....++.-.|+.++..+++.+.
T Consensus 405 --~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 --INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp --HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 333334444455555555555544
No 270
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.27 E-value=0.22 Score=38.19 Aligned_cols=93 Identities=14% Similarity=0.228 Sum_probs=56.0
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHH
Q 048766 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412 (525)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 412 (525)
..++..++.++++.|+.+....+++..-. +.++... .+. . ........|+..+..++
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg---I~~~~~~----------~~~-~---------~~~~spl~Pt~~lL~AI 58 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG---IDVNGKK----------KEG-D---------YPPSSPLYPTSRLLIAI 58 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC---CCCCCcc----------ccC-c---------cCCCCCCCCCHHHHHHH
Confidence 34566666777777777777666665554 4333210 000 0 11222566777777778
Q ss_pred HHHHhccCChHHHHHHHHHh----CCCCchhHHHHHHHHH
Q 048766 413 IRLMGQKGEVWRAQRMIREL----GFGSYGVVWRALLSAS 448 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~ 448 (525)
+.+|+..|++..|+++++.. +++-+...|..|+.-+
T Consensus 59 v~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 59 VHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 88887778888887777765 5555566777666543
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.26 E-value=0.04 Score=31.31 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHH
Q 048766 474 VYVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999998854
No 272
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.16 E-value=1.6 Score=36.40 Aligned_cols=182 Identities=10% Similarity=0.024 Sum_probs=101.3
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHh-HHHHHH--HHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHH
Q 048766 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV-TWNAMI--TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375 (525)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 375 (525)
|.-+.+||.+.--+...|+++.|.+.|+...+.|+. -|..+= -++.-.|++.-|.+-+...-+. .|+.+ |..+
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~DP-fR~L 171 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPNDP-FRSL 171 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCCh-HHHH
Confidence 334678888888888999999999999998765543 222222 2233468888888877777663 33322 2222
Q ss_pred HHHHcCCCCCcchHHHHH-HHhhhhhCCCCChhHHHH-HHHHHhccCChHHHHHHHHHhCCCC------chhHHHHHHHH
Q 048766 376 LAACSHTDIPFDKVSEYF-ESMTKDYGIKPTVEHCCS-MIRLMGQKGEVWRAQRMIRELGFGS------YGVVWRALLSA 447 (525)
Q Consensus 376 ~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~ 447 (525)
=-.+....-++.+|..-+ ++.. + .+..-|.. ++..|.-.=..+.+.+-...-..+. -..++..+++-
T Consensus 172 WLYl~E~k~dP~~A~tnL~qR~~---~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 172 WLYLNEQKLDPKQAKTNLKQRAE---K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHH---h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 222222222266666443 3333 2 23333433 2333322222222222222211111 13566778888
Q ss_pred HhcCCChHHHHHHHHHHHhhcC----CChhHHHHHHHHHhhccChh
Q 048766 448 SGACSDLDVARISAAEVIKLEG----DSDYVYVMLCNLYTSHGNWD 489 (525)
Q Consensus 448 ~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~ 489 (525)
+...|+.++|..+|+-++..+- +...++..|+.....+.+.+
T Consensus 247 ~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~l~ 292 (297)
T COG4785 247 YLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDDLA 292 (297)
T ss_pred HhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccchhh
Confidence 8899999999999999888652 23444555555555544433
No 273
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.13 E-value=1.2 Score=40.24 Aligned_cols=128 Identities=13% Similarity=0.073 Sum_probs=62.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCC--CC--CHhHHHHHHHHHcCCCCCcchHHHHHHHhhh---hhCCCCC-----
Q 048766 338 AMITGYARNGDLTKVIELFEQLKTVRDL--QP--DSVTFLNVLAACSHTDIPFDKVSEYFESMTK---DYGIKPT----- 405 (525)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~----- 405 (525)
++..++...+.++++++.|+...+-..- .| ....+..+-..|....+ +++|.-+..+..+ ..++..-
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D-~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD-YEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh-hhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3445555556666666666655442100 11 12345555555555555 5555544333321 1121111
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-------CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-------GFGSY-GVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
......+.-++...|+.-+|.+..++. +..+. ......+...|...|+.+.|..-|+++..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 111223344555666666666666553 22222 23445556666777777777777776654
No 274
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.08 E-value=1.4 Score=35.46 Aligned_cols=32 Identities=9% Similarity=0.086 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHcccCChH
Q 048766 90 NLFVELERSEIYADAYSFTSALAACGQLGSLQ 121 (525)
Q Consensus 90 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 121 (525)
+.++.+.+.+++|+...+..++..+.+.|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33344444445555555555555555544433
No 275
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.05 E-value=1.5 Score=35.40 Aligned_cols=134 Identities=14% Similarity=0.163 Sum_probs=92.1
Q ss_pred HHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCC--ChHHHHHHHhcCCCCCcc
Q 048766 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG--NLELAFGFLHRLPNPDTI 202 (525)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 202 (525)
+.++.+.+.+++|+...+..+++.+.+.|.+.....++.--+-+|.......+-.+.... -.+-|++++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~---- 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT---- 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh----
Confidence 455666677888888899999999999998888877776655555444433333332221 14556677776632
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 048766 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262 (525)
Q Consensus 203 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 262 (525)
.+..++..+...|++-+|.++.+.....+......++.+..+.++...-..+|+-..+.+
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 344567788888999999998888655555556777888888888777777777666543
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.01 E-value=0.06 Score=30.56 Aligned_cols=29 Identities=14% Similarity=0.003 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
+|..|+..|.+.|++++|++++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35678888888899999999999866543
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.96 E-value=2.5 Score=40.19 Aligned_cols=63 Identities=6% Similarity=0.053 Sum_probs=49.9
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
..+-..+...+.+.|+ .++|++.++++.+++...........|+..+...+.+.++..++.+.
T Consensus 259 ~y~KrRLAmCarklGr-~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGR-LREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhHHHHHHHHHHhCC-hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3334456677788899 99999999999875333234557788999999999999999999987
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.93 E-value=0.15 Score=44.80 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 439 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.++..++..+...|+++.+.+.+++++..+|-+...|..+..+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34555666777777778888888888888877777778888888888888888877777655
No 279
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.87 E-value=0.86 Score=34.56 Aligned_cols=119 Identities=11% Similarity=-0.010 Sum_probs=54.8
Q ss_pred HhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---------------------CCccc
Q 048766 13 SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---------------------PSVVS 71 (525)
Q Consensus 13 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------~~~~~ 71 (525)
..-.|..++..++......+. +..-+|=++--....-+=+...++++.+-. .+...
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHH
Confidence 344577777777777776654 222222222222222223333333333221 22233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHccc
Q 048766 72 WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135 (525)
Q Consensus 72 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 135 (525)
.+.-+..+..+|+-++-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 445555556666666666666655542 245555566666666666666666666666655553
No 280
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=3.7 Score=41.57 Aligned_cols=137 Identities=9% Similarity=0.055 Sum_probs=73.0
Q ss_pred hccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChHHHHH
Q 048766 14 SDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKALN 90 (525)
Q Consensus 14 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~ 90 (525)
-+.|++++|...+-+-+..- .|+ -++.-|....++..-...++.+.+ .+...-+.|+.+|.+.++.++-.+
T Consensus 379 y~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETIGFL-EPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred HhcCCHHHHHHHHHHHcccC-ChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHH
Confidence 35677887776665543221 222 234444555555555555555554 455556677777777777777666
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccC
Q 048766 91 LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167 (525)
Q Consensus 91 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 167 (525)
..+.-. .|.. ..-....+..|.+.+-.++|..+-..... +..+...++ -..+++++|.+.+..++-
T Consensus 453 fI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 453 FISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCCH
Confidence 655433 2211 11234455666666666666554443221 222333333 345677777777776643
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.81 E-value=1.1 Score=35.68 Aligned_cols=94 Identities=17% Similarity=0.025 Sum_probs=53.9
Q ss_pred cCCCCCcchHHHHHHHhhhhhCCCCChh-HHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHHHHHHHHHhcCCChHHH
Q 048766 380 SHTDIPFDKVSEYFESMTKDYGIKPTVE-HCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASGACSDLDVA 457 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A 457 (525)
...++ .+.+..++..+. -+.|... .-..-+..+.+.|++.+|+.+|+++ ...|....-..|+..|....+-..=
T Consensus 21 l~~~~-~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 21 LRLGD-PDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HccCC-hHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 44555 777777777776 4455422 2223345567788888888888887 3344444455555555544333333
Q ss_pred HHHHHHHHhhcCCChhHHHHH
Q 048766 458 RISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 458 ~~~~~~~~~~~p~~~~~~~~l 478 (525)
....+++++.+| ++.+...+
T Consensus 97 r~~A~evle~~~-d~~a~~Lv 116 (160)
T PF09613_consen 97 RRYADEVLESGA-DPDARALV 116 (160)
T ss_pred HHHHHHHHhcCC-ChHHHHHH
Confidence 445555666665 45544433
No 282
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.72 E-value=0.081 Score=29.39 Aligned_cols=32 Identities=19% Similarity=0.107 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+.++..++.++...|++++|++.+++..+..+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 35788999999999999999999999887654
No 283
>PRK09687 putative lyase; Provisional
Probab=94.66 E-value=3.1 Score=37.29 Aligned_cols=59 Identities=8% Similarity=-0.025 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCh----HHHHHHHHHH
Q 048766 37 NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKY----RKALNLFVEL 95 (525)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~A~~~~~~m 95 (525)
|..+....+..+...|..+-...+..-+..+|...-...+.++.+-|+. .++...+..+
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 4444444455555444432222222222234444444444445554442 2344444444
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.54 E-value=0.27 Score=38.99 Aligned_cols=81 Identities=14% Similarity=-0.057 Sum_probs=53.4
Q ss_pred HHHHHHHH---HhccCChHHHHHHHHHh-CCCCchhHHHH-HHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 408 HCCSMIRL---MGQKGEVWRAQRMIREL-GFGSYGVVWRA-LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 408 ~~~~l~~~---~~~~g~~~~A~~~~~~~-~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
+...|+.. -.+.++.+++..++..+ -..|....... -...+...|++++|+++|+.+.+-.|..+..--.++.++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34444443 34677888888888877 33454433332 244566788888888888888777777776666667777
Q ss_pred hhccCh
Q 048766 483 TSHGNW 488 (525)
Q Consensus 483 ~~~g~~ 488 (525)
...|+.
T Consensus 89 ~~~~D~ 94 (160)
T PF09613_consen 89 YALGDP 94 (160)
T ss_pred HHcCCh
Confidence 666653
No 285
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.48 E-value=0.018 Score=45.73 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=50.4
Q ss_pred HHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHH
Q 048766 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189 (525)
Q Consensus 110 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 189 (525)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .....++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555666667777777777777665455566777777777777766666666663222 3334455556666666665
Q ss_pred HHHHhcC
Q 048766 190 FGFLHRL 196 (525)
Q Consensus 190 ~~~~~~~ 196 (525)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555554
No 286
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.46 E-value=3.5 Score=37.05 Aligned_cols=60 Identities=7% Similarity=-0.047 Sum_probs=29.2
Q ss_pred HHHHHHHHhccccchH---HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 048766 269 TFSTMLSGIAGLSALT---WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329 (525)
Q Consensus 269 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 329 (525)
++..++.++...+..+ +|..+++.+.+.. +..+.++..-+..+.+.++.+.+.+.+..|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 4444555555544433 3334444443222 2233444444555555666666666666665
No 287
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.45 E-value=4.7 Score=38.44 Aligned_cols=177 Identities=12% Similarity=0.119 Sum_probs=104.6
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhcc--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHH
Q 048766 299 DASIVVASALLDMYSKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376 (525)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 376 (525)
+.+.....+++..+.....+.-.+.+..++. ..+-..|..++..|... ..+.-..+|+++.+ ..-|......-+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve---~dfnDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE---YDFNDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH---hcchhHHHHHHH
Confidence 3344455566666666666666666666665 34556677777777776 45667777777776 444444444433
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCC------hhHHHHHHHHHhccCChHHHHHHHHHh----CCCCchhHHHHHHH
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPT------VEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSYGVVWRALLS 446 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~ 446 (525)
..+....+ ...+..+|.++..+ +-|. ...|..+...- ..+.+....+...+ +...-...+..+..
T Consensus 139 a~~yEkik-~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 139 ADKYEKIK-KSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHhc-hhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 33434455 67777777776653 2221 22344443321 34555555555554 33344455556667
Q ss_pred HHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh
Q 048766 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484 (525)
Q Consensus 447 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 484 (525)
-|....++++|++++..+++.+-.|.-+...++.-+..
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 77778888888888888888876666665555555443
No 288
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.43 E-value=0.12 Score=32.38 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
...+..++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 455777889999999999999999999998876654
No 289
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.40 E-value=0.0076 Score=47.96 Aligned_cols=86 Identities=14% Similarity=0.146 Sum_probs=66.5
Q ss_pred HHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHH
Q 048766 8 HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRK 87 (525)
Q Consensus 8 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 87 (525)
.++..+...+.+.....+++.+.+.+...+...++.++..|++.++.++..++++.... .....++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46777888899999999999999887677799999999999999888888888884433 333567777777788888
Q ss_pred HHHHHHHHH
Q 048766 88 ALNLFVELE 96 (525)
Q Consensus 88 A~~~~~~m~ 96 (525)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 887776654
No 290
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.30 E-value=0.48 Score=41.04 Aligned_cols=108 Identities=9% Similarity=0.092 Sum_probs=78.4
Q ss_pred HHHHhcCC--CCCcccHHHHHHHHH-----hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccc-------------
Q 048766 221 IMILSSMP--SPNSSSWNSILTGYV-----NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL------------- 280 (525)
Q Consensus 221 ~~~~~~~~--~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~------------- 280 (525)
++.|..+. +.|-.+|-..+..+. +.++.+-....++.|.+-|+.-|..+|..|+..+-+.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444 355556666666554 3467777888889999999999999999999887543
Q ss_pred ---cchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCH-HHHHHHHHhc
Q 048766 281 ---SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV-EIADSMFRSL 328 (525)
Q Consensus 281 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 328 (525)
.+-+-++.++++|...|+-||..+-..+++++.+.+-. .+..++.--|
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 23456778999999999999999999999999887753 3344444444
No 291
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.27 E-value=0.25 Score=38.42 Aligned_cols=70 Identities=17% Similarity=0.095 Sum_probs=41.8
Q ss_pred ccCChHHHHHHHHHh-CCCCchhHHHH-HHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccC
Q 048766 418 QKGEVWRAQRMIREL-GFGSYGVVWRA-LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~-~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 487 (525)
..++++++..++..+ -..|+...... -...+...|++++|+++|+++.+-.|..+..--.++.++...||
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 467777777777766 23333322222 23345567777777777777777666555555555666666655
No 292
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.26 E-value=1.5 Score=35.08 Aligned_cols=119 Identities=11% Similarity=0.084 Sum_probs=67.5
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCH-hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHH-----HHHH
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPDS-VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM-----IRLM 416 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-----~~~~ 416 (525)
+++.+..++|+.-|..+.+.| ...=+ .............|+ ...|...|+++-.. .|.+.....+ ..++
T Consensus 68 lA~~~k~d~Alaaf~~lektg-~g~YpvLA~mr~at~~a~kgd-ta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTG-YGSYPVLARMRAATLLAQKGD-TAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhhccc-HHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHH
Confidence 356677777888887777765 32211 111122333455666 77777777777654 2322222222 2234
Q ss_pred hccCChHHHHHHHHHhCC--CCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 417 GQKGEVWRAQRMIRELGF--GSY-GVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
...|.+++...-.+-+.. +|- ...-..|.-+-.+.|++..|...|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 567777777777766621 222 23345566666677777777777777766
No 293
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.26 E-value=3.3 Score=35.81 Aligned_cols=160 Identities=17% Similarity=0.124 Sum_probs=93.1
Q ss_pred HHcCCCHHHHHHHHHhccCC------CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcC---C
Q 048766 312 YSKCGQVEIADSMFRSLCRK------NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH---T 382 (525)
Q Consensus 312 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~ 382 (525)
-.+.|++++|.+.|+.+... ...+.-.++-++.+.++++.|+...++......-.||. .|...+.+++. .
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccC
Confidence 34567777777777777521 12244445566677788888888888777743223332 23333333221 1
Q ss_pred C---CCcc---hHHHHHHHhhhhhC---CCCChhH------------HHHHHHHHhccCChHHHHHHHHHh-CCCCc---
Q 048766 383 D---IPFD---KVSEYFESMTKDYG---IKPTVEH------------CCSMIRLMGQKGEVWRAQRMIREL-GFGSY--- 437 (525)
Q Consensus 383 ~---~~~~---~a~~~~~~~~~~~~---~~~~~~~------------~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--- 437 (525)
. ++.. .|..-|+.+..++. ..||... =..+++.|.+.|.+..|..-++++ ..-|+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~ 202 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSA 202 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccc
Confidence 1 1122 33344444444321 1112111 124567788999999999999988 21222
Q ss_pred -hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 438 -GVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 438 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
...+..+..+|...|-.++|...-+-+-...|+++
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 34566778899999999999888766666667654
No 294
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.16 E-value=2.2 Score=33.54 Aligned_cols=45 Identities=2% Similarity=0.005 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHccc
Q 048766 72 WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117 (525)
Q Consensus 72 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 117 (525)
...++..+...+.+.....+++.+...+ ..+...++.++..+++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3445555555555556666666555544 23444555555555543
No 295
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=7.6 Score=39.15 Aligned_cols=118 Identities=17% Similarity=0.272 Sum_probs=56.2
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChHH
Q 048766 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-PDTISYNEVINGIAQFGDIED 219 (525)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 219 (525)
+....|..+...|++++|-...-.|...+..-|...+..+...++......++=.-++ -++.+|..++..+.. .+...
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~ 472 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKG 472 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHH
Confidence 4445555555556666665555555555555555555555544444333322222211 234455555544444 22222
Q ss_pred HHHHHhcCC--------------------CCCcccHHHHHHHHHhcCChhHHHHHHHHHh
Q 048766 220 AIMILSSMP--------------------SPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259 (525)
Q Consensus 220 a~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 259 (525)
-.++....+ ..+...-..|+..|...+++..|+.++-..+
T Consensus 473 F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 473 FLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 222211111 0122223346777777777777777776554
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.00 E-value=0.15 Score=28.37 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+.+|..++.+|...|++++|+..+++..+..+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 35789999999999999999999999987654
No 297
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.99 E-value=4.5 Score=36.41 Aligned_cols=19 Identities=16% Similarity=0.008 Sum_probs=11.1
Q ss_pred HHHHhhccChhHHHHHHHH
Q 048766 479 CNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~ 497 (525)
+..+.+.++|++|.+.++-
T Consensus 253 ~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHhhcCHHHHHHHHHH
Confidence 3345556666666666653
No 298
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.95 E-value=2.2 Score=40.05 Aligned_cols=70 Identities=11% Similarity=0.128 Sum_probs=58.7
Q ss_pred CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC----CChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLEG----DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 435 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
.....+|..++..+.+.|.++.|...+.++...++ ..+.+...-+..+...|+..+|+..++...+..+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 34467888999999999999999999999998662 25777888899999999999999999988874333
No 299
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.92 E-value=10 Score=40.32 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=19.5
Q ss_pred CchHHHHHHHHHHHHccC--CHHHHHHHHhcCC
Q 048766 35 LSNVFVSTALMGFYRKIN--SLADAHKMFVEIP 65 (525)
Q Consensus 35 ~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~ 65 (525)
.|+ .....+|..|.+.+ .++.|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 444 44567777888776 6777776665554
No 300
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.74 E-value=0.26 Score=43.80 Aligned_cols=93 Identities=9% Similarity=0.057 Sum_probs=52.7
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCChH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDLD 455 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~ 455 (525)
|.+.|. +++|+.+|.... .+.| ++.++..-..+|.+..++..|..-.+.. ... .-...|..-+.+-...|...
T Consensus 107 yFKQgK-y~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 107 YFKQGK-YEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhccc-hhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 455565 666666666554 3344 5555555556666666666555555443 111 11223333344444567788
Q ss_pred HHHHHHHHHHhhcCCChhHH
Q 048766 456 VARISAAEVIKLEGDSDYVY 475 (525)
Q Consensus 456 ~A~~~~~~~~~~~p~~~~~~ 475 (525)
+|.+-++.+++++|.+.+.-
T Consensus 183 EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHhHHHHHhhCcccHHHH
Confidence 88888888888888755443
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.72 E-value=0.14 Score=28.17 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 474 VYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
++..++.++.+.|++++|.+.|+++.+.-+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 455667777777777777777777766543
No 302
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.63 E-value=7.4 Score=39.96 Aligned_cols=191 Identities=15% Similarity=0.087 Sum_probs=107.6
Q ss_pred HHcCCCHHHHHHHHHhcc----CCCH-------hHHHHHH-HHHHhcCChhHHHHHHHHHhhCC---CCCCCHhHHHHHH
Q 048766 312 YSKCGQVEIADSMFRSLC----RKNL-------VTWNAMI-TGYARNGDLTKVIELFEQLKTVR---DLQPDSVTFLNVL 376 (525)
Q Consensus 312 ~~~~g~~~~A~~~~~~~~----~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~ 376 (525)
.....++++|..++.++. .++. ..|+.+- ......|+++.|+++.+.....= ...+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345677788877777663 2221 1455443 23345788899988888776631 0122345555666
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHH---H--HHHHhccCChHH--HHHHHHHh-----CCCCc----hhH
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS---M--IRLMGQKGEVWR--AQRMIREL-----GFGSY----GVV 440 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~g~~~~--A~~~~~~~-----~~~~~----~~~ 440 (525)
.+..-.|+ +++|..+.+...+. .-..+...+.. + ...+...|+... ....+... +..|- ..+
T Consensus 505 ~a~~~~G~-~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 505 EAAHIRGE-LTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred HHHHHhch-HHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 67777888 89998887776543 22233333322 2 223456673332 23333322 22222 223
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhc----CCCh---hHHHHHHHHHhhccChhHHHHHHHHHHHcCCccCC
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLE----GDSD---YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEA 507 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~----p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 507 (525)
...++.++.+ .+.+..-....++.. |... ..+..|+.+....|+.++|...++++........+
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 3334444443 566655555555543 3222 22347888899999999999999998876665543
No 303
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.46 E-value=0.13 Score=28.31 Aligned_cols=31 Identities=26% Similarity=0.032 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
+..++.++.+.|++++|.+.|+++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4456777778889999999999999888853
No 304
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.35 E-value=0.57 Score=38.30 Aligned_cols=87 Identities=13% Similarity=0.040 Sum_probs=38.0
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCCh----hHHHHHHHHHhccCChHHHHHHHHHhCCCCc--hhHHHHHHHHHhc
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTV----EHCCSMIRLMGQKGEVWRAQRMIRELGFGSY--GVVWRALLSASGA 450 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~ 450 (525)
..+...++ +++|...++..... +.|. ..-..|.+.....|.+++|+..++... .++ ......-+..+..
T Consensus 97 k~~ve~~~-~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANN-LDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhcc-HHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHH
Confidence 34455555 55555555544421 1111 111223344445555555555555432 111 1112223344555
Q ss_pred CCChHHHHHHHHHHHhhc
Q 048766 451 CSDLDVARISAAEVIKLE 468 (525)
Q Consensus 451 ~~~~~~A~~~~~~~~~~~ 468 (525)
.|+-++|...|+++++.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 555555555555555554
No 305
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.29 E-value=1.1 Score=42.03 Aligned_cols=127 Identities=10% Similarity=-0.015 Sum_probs=74.9
Q ss_pred CCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHH
Q 048766 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVAR 458 (525)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~ 458 (525)
..|+ .-.|.+-+....+++ +.++.........+...|+++.+...+... -......+...++......|++++|.
T Consensus 301 ~~gd-~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGD-IIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccC-HHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3454 444444333333322 223333333334455667777777776654 12233445566677777777777777
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCccCCccc
Q 048766 459 ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCS 510 (525)
Q Consensus 459 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 510 (525)
...+-++..+-+++++....+..-...|-++++...|+++...+.+.+.|.-
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence 7777777766666666666666666667777777777777766665555543
No 306
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.29 E-value=0.44 Score=38.44 Aligned_cols=33 Identities=24% Similarity=0.230 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
+++|+.-|++++.++|+...++..++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666665543
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.05 E-value=1 Score=37.09 Aligned_cols=92 Identities=7% Similarity=-0.150 Sum_probs=60.2
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh---CCCCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc--CCChhHHH---
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL---GFGSY--GVVWRALLSASGACSDLDVARISAAEVIKLE--GDSDYVYV--- 476 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~--- 476 (525)
..+..+++.|.+.|+.++|.+.+.++ ...+. ...+..++......+++..+...+.++...- +.+....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45667788888888888888888887 11222 3455667777777888888888888877643 33333222
Q ss_pred -HHHHHHhhccChhHHHHHHHHH
Q 048766 477 -MLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 477 -~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
.-+-.+...|++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 2233445577888888777443
No 308
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.02 E-value=4.3 Score=34.72 Aligned_cols=58 Identities=9% Similarity=-0.093 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhc------CCChhHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLE------GDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
+......+.+...+++|-..+.+-.... |+-...+...+-+|....|+..|...++.-
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 3445566777778888777666544321 433455777777778888999998888654
No 309
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.02 E-value=6 Score=34.85 Aligned_cols=60 Identities=13% Similarity=-0.087 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
+......|..+|.+.+|.++-++++.++|-+...+..|...+...||--+|...++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344566788999999999999999999999999999999999999999999999988854
No 310
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.80 E-value=2.3 Score=35.02 Aligned_cols=85 Identities=13% Similarity=0.126 Sum_probs=45.2
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCCH------hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHH
Q 048766 341 TGYARNGDLTKVIELFEQLKTVRDLQPDS------VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMI 413 (525)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~ 413 (525)
.-+...|++++|..-|.+..+ ..|.. ..|..-..++.+.+. ++.|+.-..+.+ .+.|+ ......-.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale---~cp~~~~e~rsIly~Nraaa~iKl~k-~e~aI~dcsKai---el~pty~kAl~RRA 175 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALE---SCPSTSTEERSILYSNRAAALIKLRK-WESAIEDCSKAI---ELNPTYEKALERRA 175 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHH---hCccccHHHHHHHHhhhHHHHHHhhh-HHHHHHHHHhhH---hcCchhHHHHHHHH
Confidence 345666777777777776666 33321 223333345556665 666666555554 22332 12222234
Q ss_pred HHHhccCChHHHHHHHHHh
Q 048766 414 RLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~ 432 (525)
.+|.+...+++|++-+..+
T Consensus 176 eayek~ek~eealeDyKki 194 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKI 194 (271)
T ss_pred HHHHhhhhHHHHHHHHHHH
Confidence 4566666666666666665
No 311
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.76 E-value=0.17 Score=26.17 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhhccChhHHHHHHH
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRN 496 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~ 496 (525)
.+...++.++...|+.++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456677888888888888887765
No 312
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.69 E-value=0.37 Score=42.86 Aligned_cols=90 Identities=13% Similarity=-0.125 Sum_probs=72.9
Q ss_pred HHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhH
Q 048766 413 IRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
+..|.++|.+++|+..+... ...| ++..+..-..+|.+.+.+..|+.-...++.++-.-.-+|..-+.+-...|+..|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 45788999999999999874 6666 677778888899999999999999999999886556677777777778888888
Q ss_pred HHHHHHHHHHcC
Q 048766 491 ASVMRNFMRERG 502 (525)
Q Consensus 491 A~~~~~~~~~~~ 502 (525)
|.+-++..++..
T Consensus 184 AKkD~E~vL~LE 195 (536)
T KOG4648|consen 184 AKKDCETVLALE 195 (536)
T ss_pred HHHhHHHHHhhC
Confidence 887777665543
No 313
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.53 E-value=0.54 Score=33.51 Aligned_cols=52 Identities=21% Similarity=0.096 Sum_probs=30.3
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC--ChhHHHHHHHHHhhccCh
Q 048766 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGD--SDYVYVMLCNLYTSHGNW 488 (525)
Q Consensus 437 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~ 488 (525)
|......+...+...|++++|++.+-++++.+|+ +..+-..|+.++...|.-
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 3455566666666777777777777777766543 345556666666666653
No 314
>PRK10941 hypothetical protein; Provisional
Probab=92.46 E-value=0.84 Score=40.36 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
...+-.+|.+.++++.|+++.+.++.+.|+++.-+.--|-+|.+.|.+..|..=++...+..+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 4455667788899999999999999999999988888899999999999999888888777654
No 315
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.46 E-value=3.8 Score=37.01 Aligned_cols=134 Identities=10% Similarity=0.062 Sum_probs=85.8
Q ss_pred hhhhhHHHHHHHHhCCCchHHHHHHHHHHHHc--cC----CHHHHHHHHhcCCC-------CCcccHHHHHHHHHhcCCh
Q 048766 19 DTYCQQLHCYILKSGFLSNVFVSTALMGFYRK--IN----SLADAHKMFVEIPQ-------PSVVSWNSLISGYVQSGKY 85 (525)
Q Consensus 19 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~-------~~~~~~~~ll~~~~~~~~~ 85 (525)
+.+...+++.+.+.|+..+..++-+..-.... .. ...+|.++|+.|.+ ++-.++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677888999999998888777664444433 22 36678889998876 344455555544 33333
Q ss_pred ----HHHHHHHHHHHhcCCCCCHh--hHHHHHHHHcccCC--hHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCC
Q 048766 86 ----RKALNLFVELERSEIYADAY--SFTSALAACGQLGS--LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154 (525)
Q Consensus 86 ----~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 154 (525)
+.+..+|+.+.+.|...+.. ....++..+..... ...+..+++.+.+.|+++....|..+.-...-.+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~ 232 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDP 232 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCc
Confidence 56677888888877766433 34444443333322 44788889999999988888777766544433333
No 316
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.20 E-value=0.84 Score=40.27 Aligned_cols=97 Identities=10% Similarity=0.116 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHHHHccCCHHHHHHHHhcCCC-------CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhH
Q 048766 35 LSNVFVSTALMGFYRKINSLADAHKMFVEIPQ-------PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107 (525)
Q Consensus 35 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 107 (525)
+.+..+...++..-....+++.+...+=.+.. ++...+ ..++.+ -.-++++++.++..=...|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 34444444555544445556666655544433 121111 122222 223555666666655566666666666
Q ss_pred HHHHHHHcccCChHHHHHHHHHHHHc
Q 048766 108 TSALAACGQLGSLQLGMAIHSKIVKY 133 (525)
Q Consensus 108 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 133 (525)
..+|..+.+.++...|.++.-.|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 66666666666666666665555544
No 317
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.12 E-value=0.75 Score=35.03 Aligned_cols=73 Identities=4% Similarity=-0.037 Sum_probs=53.8
Q ss_pred CCChhHHHHHHHHHhccCCh---HHHHHHHHHh-C-CCCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHH
Q 048766 403 KPTVEHCCSMIRLMGQKGEV---WRAQRMIREL-G-FGSY--GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475 (525)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 475 (525)
.++..+-..+.+++.+..+. .+.+.+++++ + ..|+ ......|.-++.+.|+++.++++.+.+++.+|+|+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 56667777778888776654 4566777776 2 3333 34556677889999999999999999999999776553
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.06 E-value=4.4 Score=31.75 Aligned_cols=54 Identities=6% Similarity=-0.194 Sum_probs=30.0
Q ss_pred HHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC
Q 048766 12 ASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ 66 (525)
Q Consensus 12 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 66 (525)
.....++++++..+++.+.-.. |..+..-..-...+...|+|++|.++|+++.+
T Consensus 19 ~aL~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 3345666677777776665442 22222222333444566777777777777665
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.97 E-value=0.36 Score=28.25 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=11.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 441 WRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
+..+...|...|++++|+.+++++++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 33444444444444444444444443
No 320
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.82 E-value=1.6 Score=38.59 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHh
Q 048766 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESM 396 (525)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 396 (525)
+..++..+...|+.+.+...++++.. ..| +...|..++.+|...|+ ...|+..|+.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~---~dp~~E~~~~~lm~~y~~~g~-~~~ai~~y~~l 213 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIE---LDPYDEPAYLRLMEAYLVNGR-QSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHcCC-chHHHHHHHHH
Confidence 33344444444555555555555444 233 44445555555555554 44454444443
No 321
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.81 E-value=7.4 Score=33.12 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=7.1
Q ss_pred hcCCHHHHHHHHhh
Q 048766 151 KCGSVEDAIGVFGE 164 (525)
Q Consensus 151 ~~g~~~~a~~~~~~ 164 (525)
..+.+++|-++|.+
T Consensus 26 g~~k~eeAadl~~~ 39 (288)
T KOG1586|consen 26 GSNKYEEAAELYER 39 (288)
T ss_pred CCcchHHHHHHHHH
Confidence 34455555555544
No 322
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.78 E-value=0.27 Score=27.39 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=24.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHccCCHHHHH
Q 048766 26 HCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58 (525)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 58 (525)
|.+.++.. |-++..|..+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45556665 677888888888888888888875
No 323
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.73 E-value=12 Score=35.46 Aligned_cols=90 Identities=7% Similarity=0.032 Sum_probs=55.4
Q ss_pred ccCChHHHHHHHHHh-CCCCchh----HHHHHHHHHhcCC----ChHHHHHHHH---HHHhhcCCChhHHHHHHHHHhhc
Q 048766 418 QKGEVWRAQRMIREL-GFGSYGV----VWRALLSASGACS----DLDVARISAA---EVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~-~~~~~~~----~~~~l~~~~~~~~----~~~~A~~~~~---~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
..|+.++|+.++-.+ .++||.. .|..++..+.... ..-...+.++ +++-.+.++..++...+.-....
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (831)
T PRK15180 710 TEGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHL 789 (831)
T ss_pred ccccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHH
Confidence 358889999888777 5677743 3555666554322 1222223333 33334455555554444445667
Q ss_pred cChhHHHHHHHHHHHcCCccCC
Q 048766 486 GNWDVASVMRNFMRERGLRKEA 507 (525)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~ 507 (525)
.++..|+++|+++.+-+-+.+|
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~ 811 (831)
T PRK15180 790 RDYTQALQYWQRLEKVNGPTEP 811 (831)
T ss_pred HHHHHHHHHHHHHHhccCCCcc
Confidence 8999999999999887665555
No 324
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.68 E-value=13 Score=35.62 Aligned_cols=88 Identities=10% Similarity=0.097 Sum_probs=43.5
Q ss_pred HHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHh---ccCChHHHHHHHHHh--CCCCchhHHHHHHHHHh
Q 048766 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG---QKGEVWRAQRMIREL--GFGSYGVVWRALLSASG 449 (525)
Q Consensus 375 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~ 449 (525)
++.-+...+. ..+|...+..+.. --+|+...|..+++.-. .+| ...+...++.+ ....++..|...+.--.
T Consensus 466 ~l~~~~e~~~-~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 466 YLDWAYESGG-YKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEEL 541 (568)
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhc
Confidence 3334444444 5566666555543 11234444444444321 122 45555555554 22255555555555555
Q ss_pred cCCChHHHHHHHHHHHh
Q 048766 450 ACSDLDVARISAAEVIK 466 (525)
Q Consensus 450 ~~~~~~~A~~~~~~~~~ 466 (525)
..|..+.+-.++.++.+
T Consensus 542 ~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRAMK 558 (568)
T ss_pred cCCCcccccHHHHHHHH
Confidence 66666666666666555
No 325
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.68 E-value=6.1 Score=31.86 Aligned_cols=25 Identities=12% Similarity=-0.085 Sum_probs=11.6
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHH
Q 048766 475 YVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
-..|+-+-.+.|++..|.+.|..+.
T Consensus 170 rEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 170 REALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHhHHHHhccchHHHHHHHHHHH
Confidence 3344444444444444444444443
No 326
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=91.49 E-value=3.9 Score=29.34 Aligned_cols=87 Identities=13% Similarity=0.068 Sum_probs=61.2
Q ss_pred chhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048766 18 WDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER 97 (525)
Q Consensus 18 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 97 (525)
..++|.-+-+.+...+- ....+...-+..+...|++++|..+.+....||...|-++-.. +.|--+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 56788888887766652 2334444445557788999999999999988999988777664 56777777777777777
Q ss_pred cCCCCCHhhHH
Q 048766 98 SEIYADAYSFT 108 (525)
Q Consensus 98 ~~~~p~~~~~~ 108 (525)
+| .|...+|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 66 45554444
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.43 E-value=0.43 Score=27.87 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.++..|+.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56889999999999999999999988763
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.27 E-value=0.56 Score=25.90 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
.+|..++.+|...|++++|...|++..+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 468899999999999999999999987653
No 329
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.13 E-value=3.1 Score=35.53 Aligned_cols=91 Identities=11% Similarity=-0.085 Sum_probs=64.0
Q ss_pred HHHHhccCChHHHHHHHHHh---------CCCCchhHHH-----------HHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 413 IRLMGQKGEVWRAQRMIREL---------GFGSYGVVWR-----------ALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~~-----------~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
++-+.+.|++.+|..-++++ ..+|..+-|. .+...+...|++-++++.-.+++...|.|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 44556677777777766653 3344433333 233344567888888888888888888888
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
-+|+.-+.+....=+-++|..-|.++.+..+
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 8888888888888888888888877766544
No 330
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=90.81 E-value=27 Score=37.70 Aligned_cols=185 Identities=12% Similarity=-0.028 Sum_probs=88.8
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHH
Q 048766 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379 (525)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 379 (525)
++..+-...+.++...+..+ ...+...+..+|...-...+.++.+.+..+. +.... ..++...-.....++
T Consensus 696 ~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l----~D~~~~VR~~aa~aL 766 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA----TDENREVRIAVAKGL 766 (897)
T ss_pred CCHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh----cCCCHHHHHHHHHHH
Confidence 34444444455554332111 2233444445565555555555555444322 12222 244555555555555
Q ss_pred cCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHH
Q 048766 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARI 459 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 459 (525)
...+.....+...+..+.. ++++..-...+.++.+.|..+.+...+..+-..++..+-...+.++...+. +++..
T Consensus 767 ~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~ 841 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVP 841 (897)
T ss_pred HHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHH
Confidence 5555411223344444432 345666666667777766655443333333223455555555556655554 34555
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 460 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.+..+++ +| ++.+....+.++.+.+.-.++...+..+.+
T Consensus 842 ~L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 842 ALVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 5555553 34 555666666666554333345555544443
No 331
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.40 E-value=2.3 Score=35.28 Aligned_cols=74 Identities=16% Similarity=0.107 Sum_probs=49.0
Q ss_pred ccCChHHHHHHHHHhCCCC--chhHHHHHHHHHhcCCChHHHHHHHHHHHhhc-CC---ChhHHHHHHHHHhhccChhHH
Q 048766 418 QKGEVWRAQRMIRELGFGS--YGVVWRALLSASGACSDLDVARISAAEVIKLE-GD---SDYVYVMLCNLYTSHGNWDVA 491 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~---~~~~~~~l~~~~~~~g~~~~A 491 (525)
+.|+ ++|.+.|-.+...| +.......+.+|....|.++++.++-+++++. |+ |+.++..|+.++.+.|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444 45555555551122 22333334445555788999999999999865 22 688899999999999998887
Q ss_pred H
Q 048766 492 S 492 (525)
Q Consensus 492 ~ 492 (525)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 332
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.30 E-value=1.1 Score=36.22 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=40.8
Q ss_pred HHHHHHHHh-CCCCc-hhHHHHHHHHHhcC-----------CChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhH
Q 048766 424 RAQRMIREL-GFGSY-GVVWRALLSASGAC-----------SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 424 ~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
+|+.-|++. .++|+ ..++..++.++... ..+++|..+|+++...+|+| ..|..-+.+. ++
T Consensus 53 dAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~k 125 (186)
T PF06552_consen 53 DAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMA------AK 125 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHH------HT
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHH------Hh
Confidence 344444443 44555 45566666655432 23677788888888899954 5555444443 35
Q ss_pred HHHHHHHHHHcCCc
Q 048766 491 ASVMRNFMRERGLR 504 (525)
Q Consensus 491 A~~~~~~~~~~~~~ 504 (525)
|-++..++.+.+..
T Consensus 126 ap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 126 APELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHSSS-
T ss_pred hHHHHHHHHHHHhh
Confidence 67777777665443
No 333
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.19 E-value=3.5 Score=35.21 Aligned_cols=89 Identities=10% Similarity=-0.066 Sum_probs=55.7
Q ss_pred ccCChHHHHHHHHHh-------CCCCc--hhHHHHHHHHHhcCCChHHHHHHHHHH-------Hhhc--CC----ChhHH
Q 048766 418 QKGEVWRAQRMIREL-------GFGSY--GVVWRALLSASGACSDLDVARISAAEV-------IKLE--GD----SDYVY 475 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~--p~----~~~~~ 475 (525)
....+++|++.+.-+ +.++. ...+..+.+.|...|+.+.....++++ .+.+ |. .....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 344555555555432 33333 344556677777777755544444444 4433 22 24567
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHcCCccC
Q 048766 476 VMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506 (525)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 506 (525)
..+|.+..+.|++++|.+.|.++...+-...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 7888999999999999999999987655443
No 334
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.15 E-value=0.49 Score=25.23 Aligned_cols=28 Identities=21% Similarity=0.053 Sum_probs=13.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
..++..+...|+++.|...++++++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344444444555555555555554444
No 335
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.96 E-value=12 Score=32.50 Aligned_cols=165 Identities=10% Similarity=0.077 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCC----C-------CHHHHHHHHHHhccccchHHHHHHHHHHHHhCC-CchHH
Q 048766 236 NSILTGYVNRNRVPEALHLFGEMQSKDVP----M-------DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL-DASIV 303 (525)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~ 303 (525)
.-+...|...+.+.+..++++++..+-.. - -...|..-|..|..+.+-..-..+|++...... -|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 44566677777777777777776543111 1 123456666667767776777777776644321 23332
Q ss_pred HHHHH----HHHHHcCCCHHHHHH-HHHhcc------CCC---HhHHHHHHHHHHhcCC--hhHHHHHHHHHhhCCCCCC
Q 048766 304 VASAL----LDMYSKCGQVEIADS-MFRSLC------RKN---LVTWNAMITGYARNGD--LTKVIELFEQLKTVRDLQP 367 (525)
Q Consensus 304 ~~~~l----~~~~~~~g~~~~A~~-~~~~~~------~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~p 367 (525)
+...+ ..+..+.|++++|.. +|+... .|- ..-|-.|...+.+.|= ++. +++.--. -.|
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDs-----QEAKPyK-NdP 302 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDS-----QEAKPYK-NDP 302 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcc-----cccCCCC-CCH
Confidence 22211 223445677777643 333332 111 1124444444444331 110 0001100 234
Q ss_pred CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHH
Q 048766 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410 (525)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 410 (525)
.....+.++.+|.... ..+-.+++..-.. .+..|+....
T Consensus 303 EIlAMTnlv~aYQ~Nd--I~eFE~Il~~~~~--~IM~DpFIRe 341 (440)
T KOG1464|consen 303 EILAMTNLVAAYQNND--IIEFERILKSNRS--NIMDDPFIRE 341 (440)
T ss_pred HHHHHHHHHHHHhccc--HHHHHHHHHhhhc--cccccHHHHH
Confidence 4455666777776543 4555555554432 4555554443
No 336
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.86 E-value=15 Score=33.23 Aligned_cols=150 Identities=13% Similarity=0.016 Sum_probs=89.3
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCCHHH
Q 048766 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ---GLDASIVVASALLDMYSKCGQVEI 320 (525)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 320 (525)
..|+..+|...++++++. .|.|...+.-.-.+|...|+.+.-...++++... ++|....+...+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 356666666677776654 4555566666666777777777766666666544 333344444455555667788888
Q ss_pred HHHHHHhccCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC---HhHHHHHHHHHcCCCCCcchHHHHHH
Q 048766 321 ADSMFRSLCRK---NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD---SVTFLNVLAACSHTDIPFDKVSEYFE 394 (525)
Q Consensus 321 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~~a~~~~~ 394 (525)
|++.-++..+- |.-+-.+....+-..|+..++.+++.+-...- -..+ ..-|-...-.+...+. ++.|+++|+
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W-r~s~mlasHNyWH~Al~~iE~ae-ye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW-RQSWMLASHNYWHTALFHIEGAE-YEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccch-hhhhHHHhhhhHHHHHhhhcccc-hhHHHHHHH
Confidence 88877777643 33345556666667778888877776544321 0111 1223333334444566 788887776
Q ss_pred Hh
Q 048766 395 SM 396 (525)
Q Consensus 395 ~~ 396 (525)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 54
No 337
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.62 E-value=25 Score=35.43 Aligned_cols=274 Identities=9% Similarity=0.009 Sum_probs=153.1
Q ss_pred hHHHHHHHhcCCC-CCcccHHHHHHH-----HHhcCChhHHHHHHHHHhh-------CCCCCCHHHHHHHHHHhcccc--
Q 048766 217 IEDAIMILSSMPS-PNSSSWNSILTG-----YVNRNRVPEALHLFGEMQS-------KDVPMDEYTFSTMLSGIAGLS-- 281 (525)
Q Consensus 217 ~~~a~~~~~~~~~-~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~~-- 281 (525)
...|.+.++...+ .+...-..+..+ +....+.+.|+.+|+.+.. .|.+ .....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCC
Confidence 3456666665543 233222222222 3355678888888888766 4422 23444445554432
Q ss_pred ---chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc-CCCHHHHHHHHHhccC-CCHhHHHHHHHHHHh----cCChhHH
Q 048766 282 ---ALTWGMLIHSCVIKQGLDASIVVASALLDMYSK-CGQVEIADSMFRSLCR-KNLVTWNAMITGYAR----NGDLTKV 352 (525)
Q Consensus 282 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a 352 (525)
+...|..++....+.|. |+.......+..... ..+...|.++|..... ..+..+-.+...|.. ..+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 56778888888888873 343333222222222 2456788888887763 344444334333332 4578888
Q ss_pred HHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHH---hc----cCChHHH
Q 048766 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLM---GQ----KGEVWRA 425 (525)
Q Consensus 353 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A 425 (525)
..++.+..+.| .|...--...+..+.. +. ++.+.-.+..+... +.......-..+.... .. ..+.+.+
T Consensus 384 ~~~~k~aA~~g--~~~A~~~~~~~~~~g~-~~-~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 384 FAYYKKAAEKG--NPSAAYLLGAFYEYGV-GR-YDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHcc--ChhhHHHHHHHHHHcc-cc-ccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 89998888866 3332222233334444 55 56666555555433 3332221111111111 11 2355666
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHhc----CCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc-c--ChhHHHHHHHHH
Q 048766 426 QRMIRELGFGSYGVVWRALLSASGA----CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH-G--NWDVASVMRNFM 498 (525)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~ 498 (525)
...+.+.....+......+...|.. ..+++.|...+.++.... ......++.++... | ++..|.+++++.
T Consensus 459 ~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~ 535 (552)
T KOG1550|consen 459 FSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQA 535 (552)
T ss_pred HHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHH
Confidence 7777766444455555555555433 347899999999888777 77788888888663 1 267888888887
Q ss_pred HHcC
Q 048766 499 RERG 502 (525)
Q Consensus 499 ~~~~ 502 (525)
.+.+
T Consensus 536 ~~~~ 539 (552)
T KOG1550|consen 536 SEED 539 (552)
T ss_pred HhcC
Confidence 6644
No 338
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.46 E-value=0.13 Score=45.65 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=52.6
Q ss_pred ccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHH
Q 048766 418 QKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (525)
..|.++.|++.|... ..+|. ...+..-..++.+.+....|++-+..+++++|+....|-.-+.+....|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 345555555555544 22332 3333344455566666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCccCCc
Q 048766 496 NFMRERGLRKEAG 508 (525)
Q Consensus 496 ~~~~~~~~~~~~~ 508 (525)
....+.++....+
T Consensus 206 ~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 206 ALACKLDYDEANS 218 (377)
T ss_pred HHHHhccccHHHH
Confidence 6666666554433
No 339
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.30 E-value=21 Score=34.16 Aligned_cols=121 Identities=12% Similarity=0.028 Sum_probs=73.1
Q ss_pred HHHhcCChhHHHHHHHHHhhC---C-CCCCC--H-hHHHHHHHHHcCCCCCcchHHHHHHHhhhh------hCCCCChhH
Q 048766 342 GYARNGDLTKVIELFEQLKTV---R-DLQPD--S-VTFLNVLAACSHTDIPFDKVSEYFESMTKD------YGIKPTVEH 408 (525)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~---~-~~~p~--~-~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~ 408 (525)
.+.-.|++.+|.+++-..--+ | -+.|. . ..++.+.-...+.+. +..+..+|.+..+. .|++|...
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~-y~~~~~~F~kAL~N~c~qL~~g~~~~~~- 326 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGC-YQASSVLFLKALRNSCSQLRNGLKPAKT- 326 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhh-HHHHHHHHHHHHHHHHHHHhccCCCCcc-
Confidence 345578888888877653221 1 01221 1 112334344455565 66666666665531 02222110
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
..+.....-......+-.+...|++-.|.++|.++....-.+|..|..|+.+|...
T Consensus 327 ---------------------~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 327 ---------------------FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ---------------------eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 00111233445566777888999999999999999998888999999999998764
No 340
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.29 E-value=4.1 Score=33.56 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=33.2
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HhhHHHHHHHHcccCChHHHHHHHHHHHH
Q 048766 71 SWNSLISGYVQSGKYRKALNLFVELERSEIYAD--AYSFTSALAACGQLGSLQLGMAIHSKIVK 132 (525)
Q Consensus 71 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 132 (525)
.+..+...|.+.|+.+.|++.|.++.+....|. ...+-.+|+.....+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555556666666666666666555433332 23344555555556666666655555443
No 341
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.29 E-value=8.8 Score=38.53 Aligned_cols=180 Identities=13% Similarity=0.083 Sum_probs=116.0
Q ss_pred CHHHHHHHHHhccC-CCHhHHHHHHHH-----HHhcCChhHHHHHHHHHhh-------CCCCCCCHhHHHHHHHHHcCCC
Q 048766 317 QVEIADSMFRSLCR-KNLVTWNAMITG-----YARNGDLTKVIELFEQLKT-------VRDLQPDSVTFLNVLAACSHTD 383 (525)
Q Consensus 317 ~~~~A~~~~~~~~~-~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~p~~~~~~~l~~~~~~~~ 383 (525)
+...|..+++.... .+...-..+... +...+|.+.|+.+++.+.+ .| .......+...|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~----~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG----LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc----CCccccHHHHHHhcCC
Confidence 35678888887764 344443333333 4456789999999999877 44 3345667777777754
Q ss_pred C----CcchHHHHHHHhhhhhCCCCChhHHHHHHHHHh--c-cCChHHHHHHHHHhCCCCchhHHHHHHHHHh----cCC
Q 048766 384 I----PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG--Q-KGEVWRAQRMIRELGFGSYGVVWRALLSASG----ACS 452 (525)
Q Consensus 384 ~----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~-~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 452 (525)
. +.+.|..++....+. | .|+... .++..|. . ..+...|.+.|..............+...|. ...
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~-g-~~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAEL-G-NPDAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhc-C-CchHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCC
Confidence 2 156688998887653 3 344333 3344443 2 2467899999998833344444444443332 345
Q ss_pred ChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc-cChhHHHHHHHHHHHcCCccC
Q 048766 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH-GNWDVASVMRNFMRERGLRKE 506 (525)
Q Consensus 453 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~ 506 (525)
+...|..++.++-+.++ +.+...++..+.-. ++++.+...+..+.+.|....
T Consensus 379 ~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~ 431 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVA 431 (552)
T ss_pred CHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHH
Confidence 89999999999999983 45444444443332 999999999988888877643
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.10 E-value=0.68 Score=27.59 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=16.5
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 477 MLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
.|+.+|...|+.+.|+++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 45666666666666666666666443
No 343
>PRK12798 chemotaxis protein; Reviewed
Probab=88.75 E-value=21 Score=33.53 Aligned_cols=181 Identities=12% Similarity=0.143 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHHhccC----CCHhHHHHHHHH-HHhcCChhHHHHHHHHHhhCCCCCCCH----hHHHHHHHHHcCCCCC
Q 048766 315 CGQVEIADSMFRSLCR----KNLVTWNAMITG-YARNGDLTKVIELFEQLKTVRDLQPDS----VTFLNVLAACSHTDIP 385 (525)
Q Consensus 315 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~ 385 (525)
.|+.+++.+.+..+.. +....+-.|+.+ .....++..|+++|+...- .-|.. .....-+......|+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL---laPGTLvEEAALRRsi~la~~~g~- 200 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL---LAPGTLVEEAALRRSLFIAAQLGD- 200 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH---hCCchHHHHHHHHHhhHHHHhcCc-
Confidence 5777888888777752 334455555544 3446688888888888776 56643 334444555667777
Q ss_pred cchHHHHHHHhhhhhCCCCChhHH-HHHHHHHhccC---ChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEHC-CSMIRLMGQKG---EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 461 (525)
.+++..+-..-.+++...|-...| ..+...+.+.+ ..+.-..++..|.-......|..+...-...|+.+-|...-
T Consensus 201 ~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 201 ADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888777766666654444432222 22333333332 33444555555542333557777777778889999998888
Q ss_pred HHHHhhcCC----ChhHHHHHHHHHhhccChhHHHHHHHHHH
Q 048766 462 AEVIKLEGD----SDYVYVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 462 ~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
++++.+... ...+...-+-+-.-..++++|.+.+..+-
T Consensus 281 ~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 281 ERALKLADPDSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 888887521 11222222222233455666666665543
No 344
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.59 E-value=2 Score=36.40 Aligned_cols=78 Identities=13% Similarity=-0.031 Sum_probs=32.9
Q ss_pred cchHHHHHHHhhhhhCCCCChhH-HHHHHHHHhccCChHHHHHHHHHh-CCCCchhH-HHHHHHHHhcCCChHHHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEH-CCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVV-WRALLSASGACSDLDVARISAA 462 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~ 462 (525)
++.|+..|.+.+ -+.|++.+ |..=+..+.+..+++.+..-..+. .+.|+..- ...+.........+++|+..+.
T Consensus 26 y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 26 YDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 555555554444 33444422 233333444444444444433332 33333222 2223333344445555555555
Q ss_pred HHHh
Q 048766 463 EVIK 466 (525)
Q Consensus 463 ~~~~ 466 (525)
++..
T Consensus 103 ra~s 106 (284)
T KOG4642|consen 103 RAYS 106 (284)
T ss_pred HHHH
Confidence 5543
No 345
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.44 E-value=19 Score=32.64 Aligned_cols=135 Identities=16% Similarity=0.200 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHc--CC----CHHHHHHHHHhccC-------CCHhHHHHHHHHHHhcCC--
Q 048766 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSK--CG----QVEIADSMFRSLCR-------KNLVTWNAMITGYARNGD-- 348 (525)
Q Consensus 284 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~-- 348 (525)
.+...+++.+.+.|+..+..++.+....... .. ....|.++|+.|.+ ++-.++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3344555556666555555444432222222 11 23455666666652 222334444332 2222
Q ss_pred --hhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCC--cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCCh
Q 048766 349 --LTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIP--FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422 (525)
Q Consensus 349 --~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 422 (525)
.+.+..+|+.+.+.| ...+ ..-+.+-+-++...... ..++.++++.+.+. ++++....|..++-.-.-.+..
T Consensus 157 ~l~~~~E~~Y~~L~~~~-f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAG-FKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHHhcCCch
Confidence 356677888888877 6553 33333333333333221 23677788888777 8888887777665544333333
No 346
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.84 E-value=2.1 Score=35.82 Aligned_cols=62 Identities=11% Similarity=-0.022 Sum_probs=45.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
..-+..+.+.+...+|+...+.- +.+|. ...-..++..++-.|++++|..-++-+-.+.|++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34456677788888888887764 44444 4455667778888889998888888888888754
No 347
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.52 E-value=3.9 Score=29.53 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHH
Q 048766 87 KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146 (525)
Q Consensus 87 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 146 (525)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++..+..- .+...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHH
Confidence 344555555556667777777777777777777777777777665442 23333555544
No 348
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.96 E-value=9.4 Score=27.50 Aligned_cols=87 Identities=20% Similarity=0.175 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 048766 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362 (525)
Q Consensus 283 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 362 (525)
.++|..|-+.+...+-. ...+-..-+..+.+.|+++.|..+.+....||...|-.|-. .+.|-.+++..-+.++...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34444444444443311 22222333456778899999999999888888888876644 4667777777778788777
Q ss_pred CCCCCCHhHHHH
Q 048766 363 RDLQPDSVTFLN 374 (525)
Q Consensus 363 ~~~~p~~~~~~~ 374 (525)
| .|....|..
T Consensus 98 g--~p~lq~Faa 107 (115)
T TIGR02508 98 G--DPRLQTFVA 107 (115)
T ss_pred C--CHHHHHHHH
Confidence 6 666665544
No 349
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.92 E-value=4.2 Score=29.02 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHH
Q 048766 87 KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIV 131 (525)
Q Consensus 87 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 131 (525)
++.+-++.+...++.|++....+.+++|.+.+++..|.++++..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344455555555666666666666666666666666666666554
No 350
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.80 E-value=11 Score=36.92 Aligned_cols=125 Identities=17% Similarity=0.166 Sum_probs=66.0
Q ss_pred hcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 048766 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSP 230 (525)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 230 (525)
-.|+++.|..++..+.++ ..+.++.-+.+.|..++|+++-. +|+. -.....+.|+++.|.++..+. .
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~---D~d~-----rFelal~lgrl~iA~~la~e~--~ 664 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELST---DPDQ-----RFELALKLGRLDIAFDLAVEA--N 664 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCC---Chhh-----hhhhhhhcCcHHHHHHHHHhh--c
Confidence 346666666666555432 23344555556666666655422 2221 122334566777776665543 3
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhC
Q 048766 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297 (525)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 297 (525)
+..-|..|..+..+.+++..|.+.|....+ |..|+-.+...|+-+....+-....+.|
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 444577777777777777777777665543 2334444444454444444444444433
No 351
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=86.47 E-value=2.2 Score=22.95 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 048766 452 SDLDVARISAAEVIKLEGDSDYVYVMLCNL 481 (525)
Q Consensus 452 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 481 (525)
|+.+.|..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999999888888888877654
No 352
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.42 E-value=42 Score=34.38 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHHHHhhc---CCChh-HH-----HHHHHHHhhccChhHHHHHHHHHHH
Q 048766 451 CSDLDVARISAAEVIKLE---GDSDY-VY-----VMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 451 ~~~~~~A~~~~~~~~~~~---p~~~~-~~-----~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.|+..+.......+.... |+... .| ..+...+...|+.++|.....+...
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 788888777777666543 32222 23 2445558889999999988877643
No 353
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=86.27 E-value=14 Score=28.96 Aligned_cols=78 Identities=10% Similarity=0.152 Sum_probs=52.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcCCC---------CCcccHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCHhhHHH
Q 048766 40 VSTALMGFYRKINSLADAHKMFVEIPQ---------PSVVSWNSLISGYVQSGK-YRKALNLFVELERSEIYADAYSFTS 109 (525)
Q Consensus 40 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~ll~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~ 109 (525)
..+.++.-....++....+.+++.+.. .+..+|+.++.+...... --.+..+|..|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456777777777777777777776643 345567777777755544 3446667777777667777777777
Q ss_pred HHHHHccc
Q 048766 110 ALAACGQL 117 (525)
Q Consensus 110 ll~~~~~~ 117 (525)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77776654
No 354
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.17 E-value=16 Score=32.12 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=17.5
Q ss_pred HHHHHHhhccChhHHHHHHHHHHH
Q 048766 477 MLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.++.++.+.|.+.+|+.+..-+..
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 467778888888888877765544
No 355
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.90 E-value=1.3 Score=22.71 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=10.2
Q ss_pred HHHHHHhccCChHHHHHHHH
Q 048766 411 SMIRLMGQKGEVWRAQRMIR 430 (525)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~ 430 (525)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555443
No 356
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=85.88 E-value=3.1 Score=40.28 Aligned_cols=96 Identities=13% Similarity=0.034 Sum_probs=52.6
Q ss_pred CCCCcchHHHHHHHhhhhhCCCCC--hhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHH
Q 048766 382 TDIPFDKVSEYFESMTKDYGIKPT--VEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVA 457 (525)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A 457 (525)
.|+ ...|.+++..+.. ..|- ......|.....+.|..-+|..++... .+ ...+.++..++.++....+.+.|
T Consensus 620 ~gn-~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 620 VGN-STFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred cCC-cHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 344 5666666655542 2331 122334555555566666666665543 11 22344555666666666677777
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHH
Q 048766 458 RISAAEVIKLEGDSDYVYVMLCNL 481 (525)
Q Consensus 458 ~~~~~~~~~~~p~~~~~~~~l~~~ 481 (525)
++.|++++++.|+++..-..|..+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHH
Confidence 777777777766666665554443
No 357
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.80 E-value=80 Score=37.07 Aligned_cols=306 Identities=12% Similarity=0.050 Sum_probs=157.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhc----cCCC--hhhHHHHHHHHHhCCChHHHHHHHh-cCCCCCcchHHHHHHHHHhcCC
Q 048766 144 CLIDMYGKCGSVEDAIGVFGEM----IDKD--IISWNSVIAASARNGNLELAFGFLH-RLPNPDTISYNEVINGIAQFGD 216 (525)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~----~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 216 (525)
.+..+-.+++.+.+|...++.- .+.+ ..-+..+...|...+++|....+.. +..+|+ ...-+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4555667888899999888883 2211 1233444448888888888777776 333333 2334556677899
Q ss_pred hHHHHHHHhcCCC--CC-cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH-HHHHhccccchHHHHHHHHH
Q 048766 217 IEDAIMILSSMPS--PN-SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST-MLSGIAGLSALTWGMLIHSC 292 (525)
Q Consensus 217 ~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~ 292 (525)
++.|...|+.+.+ |+ ..+++.++......|+++.+.-..+-.... ..+....++. -+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 9999999999884 43 567888888777888888777755544433 1222222222 2223345555555555443
Q ss_pred HHHhCCCchHHHHHH--HHHHHHcC---CCHHH--HHHHHHhcc---------CC-CHhHHHHHHHHHHhcCChhHHHHH
Q 048766 293 VIKQGLDASIVVASA--LLDMYSKC---GQVEI--ADSMFRSLC---------RK-NLVTWNAMITGYARNGDLTKVIEL 355 (525)
Q Consensus 293 ~~~~~~~~~~~~~~~--l~~~~~~~---g~~~~--A~~~~~~~~---------~~-~~~~~~~l~~~~~~~~~~~~a~~~ 355 (525)
+.+ ...|.. +.....+. ..+.. ..+..+... .. -...|..++....-.. .+.-.+.
T Consensus 1543 --~~n----~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~~~~~ 1615 (2382)
T KOG0890|consen 1543 --DRN----IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LENSIEE 1615 (2382)
T ss_pred --ccc----ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 111 111111 11111111 11111 111111110 00 1123444444332211 1111111
Q ss_pred HHHHhhCCCCCCCHh------HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-----ChhHHHHHHHHHhccCChHH
Q 048766 356 FEQLKTVRDLQPDSV------TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-----TVEHCCSMIRLMGQKGEVWR 424 (525)
Q Consensus 356 ~~~~~~~~~~~p~~~------~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~ 424 (525)
+.. ..|+.. -|..-+..-....+-.+-....-+.+... ...| -..+|...++...++|+++.
T Consensus 1616 l~~------~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~-~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1616 LKK------VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDL-RMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred hhc------cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHH-hccccccchhHHHHHHHHHHHHhcccHHH
Confidence 111 222211 11111111111111011111111111111 1122 25678888888888999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 425 AQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 425 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
|...+-.++...-+..+...+.-..+.|+...|+.++++.++..
T Consensus 1689 A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1689 AQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 98887766433455666777888889999999999999999754
No 358
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.41 E-value=47 Score=34.09 Aligned_cols=248 Identities=11% Similarity=-0.048 Sum_probs=129.8
Q ss_pred cCChhHHHHHHHHHhhCC-CCCCHH--HHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHH
Q 048766 245 RNRVPEALHLFGEMQSKD-VPMDEY--TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321 (525)
Q Consensus 245 ~~~~~~a~~~~~~m~~~~-~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 321 (525)
..+.+.|..++....... ..+... ....+.......+...++...+....... .+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 455688888888764432 222222 22222222222222444555544433222 2344445555566688899998
Q ss_pred HHHHHhccC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhh
Q 048766 322 DSMFRSLCR---KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398 (525)
Q Consensus 322 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 398 (525)
...+..|.. ....-.-=+.+++...|+.++|...|+++.. .. +|..++.+-. .|.++.-.......-..
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~----~~---~fYG~LAa~~-Lg~~~~~~~~~~~~~~~ 403 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ----QR---GFYPMVAAQR-LGEEYPLKIDKAPKPDS 403 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc----CC---CcHHHHHHHH-cCCCCCCCCCCCCchhh
Confidence 888888862 1222333456776778999999999998743 11 2333332211 12201100000000000
Q ss_pred hhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc-C--CChhHH
Q 048766 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE-G--DSDYVY 475 (525)
Q Consensus 399 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p--~~~~~~ 475 (525)
.+..++ -..-+..+...|+...|...+..+....+......+.....+.|.++.++....+....+ . .-|..|
T Consensus 404 --~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~ 479 (644)
T PRK11619 404 --ALTQGP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAW 479 (644)
T ss_pred --hhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcch
Confidence 001011 122345566789999999988877323455555666666667889999888776554321 0 123345
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHcCCccC
Q 048766 476 VMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506 (525)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 506 (525)
......+.+.-.++.++-+----++.++.|.
T Consensus 480 ~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 480 NDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 5566666666666766644333345555544
No 359
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.38 E-value=59 Score=35.14 Aligned_cols=140 Identities=11% Similarity=0.092 Sum_probs=81.0
Q ss_pred HHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcc
Q 048766 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387 (525)
Q Consensus 308 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 387 (525)
.++.-.+.|.+..|..++.--.+.-...|.+....+...+.+++|.-.|+..-+ ..-.+.+|...|+ |.
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~d-Wr 982 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGD-WR 982 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhcc-HH
Confidence 333344556666665555433333334555566666677778888877776544 2255667777777 88
Q ss_pred hHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 388 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
+|..+..++.. +-.--..+-..|+..+...+++-+|.++..+...+|... +..+++...+++|++......
T Consensus 983 ~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a-----v~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 983 EALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA-----VALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH-----HHHHhhHhHHHHHHHHHHhcc
Confidence 88888776643 111112233567777778888888888888764333321 222333445566655554443
No 360
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.15 E-value=48 Score=33.91 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=12.5
Q ss_pred HhhccChhHHHHHHHHHHHcCCcc
Q 048766 482 YTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
+.+.|+|++|++.+++ .++-|
T Consensus 515 ~~~~g~~~~AL~~i~~---L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEK---LDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHH---TT-S-
T ss_pred HHHcCCHHHHHHHHHh---CCCCC
Confidence 4678899999776654 44555
No 361
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.91 E-value=8.4 Score=27.56 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=36.7
Q ss_pred HHHHHHHHh---CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHH
Q 048766 424 RAQRMIREL---GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 424 ~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 478 (525)
++.+-++.+ ..-|++.+..+.+++|.+.+|+..|+++++-+...-.++...|..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 444444443 5678888888888888888888888888887764433244444443
No 362
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.89 E-value=11 Score=31.34 Aligned_cols=76 Identities=11% Similarity=-0.002 Sum_probs=49.3
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh------CCCCchhHHHHHHHHHhcCC
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL------GFGSYGVVWRALLSASGACS 452 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~~l~~~~~~~~ 452 (525)
..+.|+ +.|.+.|-.+... +.--++.....|+..|. ..+.++++.++.+. +..+++..+..|+..+.+.|
T Consensus 117 Wsr~~d--~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 117 WSRFGD--QEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred hhccCc--HHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 344454 6777777777654 44445666666665554 56777777777664 22567777788888888888
Q ss_pred ChHHHH
Q 048766 453 DLDVAR 458 (525)
Q Consensus 453 ~~~~A~ 458 (525)
+++.|-
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 777663
No 363
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.63 E-value=50 Score=33.75 Aligned_cols=168 Identities=17% Similarity=0.194 Sum_probs=90.2
Q ss_pred HHHHHhcCCHHHHHHHHhhccCC-----ChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 048766 146 IDMYGKCGSVEDAIGVFGEMIDK-----DIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220 (525)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 220 (525)
++.+.+.+.+++|+.+.+..... -...+..++..+.-.|++++|-...-.|-..+..-|...+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 56667778888888887766442 1235667777788888888887777777666666666666666666655544
Q ss_pred HHHHhcCCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCC
Q 048766 221 IMILSSMPS-PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299 (525)
Q Consensus 221 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 299 (525)
..++-.-.. -+...|..++..+.. .+...-.++.++. +++...-..++++. ..++ . .. .
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~W-----p~~Lys~l~iisa~--~~q~----------~-q~-S 502 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEW-----PGHLYSVLTIISAT--EPQI----------K-QN-S 502 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhC-----ChhhhhhhHHHhhc--chHH----------H-hh-c
Confidence 443322221 334456666666655 2222222222211 22221111111111 0000 0 01 1
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCH
Q 048766 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333 (525)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 333 (525)
-+......|+..|...+++.+|.+++-.+..++.
T Consensus 503 e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 503 ESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred cchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 1122223377777788888888877777765543
No 364
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=84.48 E-value=22 Score=36.01 Aligned_cols=103 Identities=20% Similarity=0.249 Sum_probs=56.1
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCCh
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 422 (525)
|...+..+.|.++|++..+ +.|+..+=..+...+...|..++...++-.- | ..|-..+++.|..
T Consensus 297 ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG~~Fens~Elq~I-----g--------mkLn~LlgrKG~l 360 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAGEHFENSLELQQI-----G--------MKLNSLLGRKGAL 360 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhhhhccchHHHHHH-----H--------HHHHHHhhccchH
Confidence 3344555667777777776 6665433222222222223212222222110 1 1233455677776
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 423 WRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 423 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
++-.+.|+-. .++.+-.-.+|+.+|++..+.+.+++|..
T Consensus 361 eklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 361 EKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 6666665432 23444455789999999999999999744
No 365
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=84.47 E-value=29 Score=30.83 Aligned_cols=105 Identities=15% Similarity=0.074 Sum_probs=49.7
Q ss_pred ccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHH----HHhcCCCCCHhhHHHHHHHHcccCChH-HHH
Q 048766 50 KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE----LERSEIYADAYSFTSALAACGQLGSLQ-LGM 124 (525)
Q Consensus 50 ~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~ 124 (525)
+++++++|++++-. =...+.+.|+...|.++..- +.+.++++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34666777665432 23345566776665554433 334566666666566665554432211 222
Q ss_pred HHHHHHHH---cccC--CCcchhhHHHHHHHhcCCHHHHHHHHhhc
Q 048766 125 AIHSKIVK---YSLE--RGVVIANCLIDMYGKCGSVEDAIGVFGEM 165 (525)
Q Consensus 125 ~~~~~~~~---~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 165 (525)
++.+.+++ .|-. -++.....+...|.+.|++.+|+.-|-.-
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 33333332 2211 24556667777777777777777665443
No 366
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=84.38 E-value=65 Score=34.85 Aligned_cols=269 Identities=13% Similarity=0.028 Sum_probs=145.9
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH
Q 048766 191 GFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270 (525)
Q Consensus 191 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 270 (525)
.+...+.++++.+-...+..+.+.+..+....+...+.+++...-...+.++.+.+........+..+... +|...-
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR 701 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVR 701 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHH
Confidence 33344456666666666666666665443333444444444444444444444332221122333333332 455555
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChh
Q 048766 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350 (525)
Q Consensus 271 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 350 (525)
...+.++...+..+ ...+.. ..+ .++..+-...+.++.+.+..+ .+...+..++...-...+.++...+..+
T Consensus 702 ~~A~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 702 AAALDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhcccc
Confidence 55555554433211 111222 221 455555566666666655443 2334445667766666777777766544
Q ss_pred H-HHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHH
Q 048766 351 K-VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429 (525)
Q Consensus 351 ~-a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (525)
. +...+..+.. .+|...-...+.++...+. .+.+...+..+.+ +++..+-...+.++.+.+.. ++...+
T Consensus 774 ~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~-~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~~-~a~~~L 843 (897)
T PRK13800 774 APAGDAVRALTG----DPDPLVRAAALAALAELGC-PPDDVAAATAALR----ASAWQVRQGAARALAGAAAD-VAVPAL 843 (897)
T ss_pred chhHHHHHHHhc----CCCHHHHHHHHHHHHhcCC-cchhHHHHHHHhc----CCChHHHHHHHHHHHhcccc-chHHHH
Confidence 3 3455555554 5567777778888888876 5444444444443 35556666677777777764 455555
Q ss_pred HHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 430 RELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 430 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
..+-..|+..+-...+.++.+.+....+...+..+++ ++ ++.+-.....++
T Consensus 844 ~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~-D~-d~~Vr~~A~~aL 894 (897)
T PRK13800 844 VEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT-DS-DADVRAYARRAL 894 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh-CC-CHHHHHHHHHHH
Confidence 5553466777777777777765445667778877776 33 455544444443
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.36 E-value=2.1 Score=22.44 Aligned_cols=29 Identities=24% Similarity=0.135 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.++..++.++...|++++|...+++..+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999887754
No 368
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.32 E-value=19 Score=32.59 Aligned_cols=92 Identities=11% Similarity=-0.092 Sum_probs=70.8
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh----CCCCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL----GFGSY--GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
..|.-=++-|.+..++..|...|.+- ...|+ ...|..-..+....|++..|+.-..+++..+|.+.-+|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34444566788899999999999874 22333 4456556666677899999999999999999999999999999
Q ss_pred HHhhccChhHHHHHHHHH
Q 048766 481 LYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~ 498 (525)
++....++++|...-++.
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999877776655443
No 369
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=83.39 E-value=8.6 Score=30.14 Aligned_cols=66 Identities=14% Similarity=-0.001 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhH
Q 048766 422 VWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 422 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
.+.|.++.+-|+ ...............|++.-|.++.+.++..+|+|..+....+.+|.+.|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 345666666664 233344455566778999999999999999999999999999999988775443
No 370
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=83.36 E-value=2.2 Score=35.94 Aligned_cols=57 Identities=16% Similarity=0.295 Sum_probs=33.6
Q ss_pred HhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 416 MGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 416 ~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
..+.|+.+.|.+++++. ...|. ...|..+....-+.|+++.|.+.+++.++++|++.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34556666666666654 32333 44565666666666666666666666666666543
No 371
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=82.97 E-value=4.7 Score=29.06 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=38.0
Q ss_pred hcCCChHHHHHHHHHHHhhcCC----C-----hhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 449 GACSDLDVARISAAEVIKLEGD----S-----DYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 449 ~~~~~~~~A~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.+.||+.+|.+.+.+.+..... . ..+...++.++...|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678888888888777764311 1 23455677888889999999999888765
No 372
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=82.79 E-value=14 Score=30.13 Aligned_cols=47 Identities=6% Similarity=0.022 Sum_probs=24.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHH
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVAS 492 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 492 (525)
+..|.+.|.+++|.+++++..+ +|++...-..|+.+-.....+...+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~l 164 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVL 164 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHH
Confidence 4456666666666666666666 5555554444444444444444333
No 373
>PRK10941 hypothetical protein; Provisional
Probab=82.68 E-value=8.5 Score=34.17 Aligned_cols=68 Identities=10% Similarity=-0.083 Sum_probs=55.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
.+.+-.+|.+.++++.|+.+.+.+ ...|+ +.-+.--+-.|.+.|.+..|..-++..++.-|++|.+-.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 345667888999999999999987 44444 556777788899999999999999999999998877644
No 374
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.62 E-value=27 Score=29.04 Aligned_cols=91 Identities=9% Similarity=-0.008 Sum_probs=67.7
Q ss_pred HHHHHHhccCChHHHHHHHHHh-CCCCch----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 411 SMIRLMGQKGEVWRAQRMIREL-GFGSYG----VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
.+...+..+|++++|...++.. ....|. ..-..|.......|.+|+|+..++...+.+- .+.....-++++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 4456788899999999999875 322221 2233456677889999999999887655432 344566788999999
Q ss_pred cChhHHHHHHHHHHHcC
Q 048766 486 GNWDVASVMRNFMRERG 502 (525)
Q Consensus 486 g~~~~A~~~~~~~~~~~ 502 (525)
|+.++|+.-|++.++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999998887
No 375
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.39 E-value=12 Score=27.07 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=34.2
Q ss_pred HHHHHHHHh---CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHH
Q 048766 424 RAQRMIREL---GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 424 ~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 478 (525)
+..+-++.+ ..-|++.+..+.+.+|.+.+|+..|+++++-+...-.+....|..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 344444443 5678888888888899889999999998887776544333355444
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.22 E-value=4.9 Score=27.46 Aligned_cols=46 Identities=9% Similarity=0.045 Sum_probs=33.9
Q ss_pred cCCChHHHHHHHHHHHhhcCCChhHHHH---HHHHHhhccChhHHHHHH
Q 048766 450 ACSDLDVARISAAEVIKLEGDSDYVYVM---LCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 450 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~---l~~~~~~~g~~~~A~~~~ 495 (525)
..++.++|+..++++++..++.+.-|.. |..+|...|++.+.+.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888999999998887766655554 456677778888777663
No 377
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.66 E-value=17 Score=35.70 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=65.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCC
Q 048766 40 VSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119 (525)
Q Consensus 40 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 119 (525)
..+.+...+-+.|-.++|+++-.. |+. -.....+.|+.+.|.++..+.. +..-|..|.++....++
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D---~d~-----rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTD---PDQ-----RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCC---hhh-----hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhccc
Confidence 445666777777777777654321 111 1222334566666666554432 34456666666666666
Q ss_pred hHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcC
Q 048766 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196 (525)
Q Consensus 120 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 196 (525)
+..|.+.|...... ..|+-++...|+-+....+-....+.. ..|.-..+|...|+++++.+++.+-
T Consensus 682 l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~g--~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 682 LPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQG--KNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred chhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhhc--ccchHHHHHHHcCCHHHHHHHHHhc
Confidence 66666666554332 233444444455443333332222211 1122233455566666666666554
No 378
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=81.57 E-value=41 Score=30.46 Aligned_cols=78 Identities=17% Similarity=-0.048 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHH----hcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc-------------
Q 048766 424 RAQRMIRELGFGSYGVVWRALLSAS----GACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG------------- 486 (525)
Q Consensus 424 ~A~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 486 (525)
.|...+.++-...+......+...| .-..++.+|...|.++-+.+. ......++ .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 5566665551122333333333333 223477777777777777665 45555555 444444
Q ss_pred --ChhHHHHHHHHHHHcCCc
Q 048766 487 --NWDVASVMRNFMRERGLR 504 (525)
Q Consensus 487 --~~~~A~~~~~~~~~~~~~ 504 (525)
+...|...+......+..
T Consensus 250 ~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 250 EEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CCCHHHHHHHHHHHHHcCCh
Confidence 667777777777666654
No 379
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.22 E-value=9.1 Score=37.29 Aligned_cols=91 Identities=12% Similarity=-0.041 Sum_probs=74.5
Q ss_pred HHHHhc-cCChHHHHHHHHHh-CCCCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccCh
Q 048766 413 IRLMGQ-KGEVWRAQRMIREL-GFGSY--GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW 488 (525)
Q Consensus 413 ~~~~~~-~g~~~~A~~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 488 (525)
...|.| .|+...|...+..+ ...|. ......|.....+.|-.-.|-.++.+.+.+....|..+..+++++....++
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 345554 69999999999886 33333 345666777788888888999999999999877889999999999999999
Q ss_pred hHHHHHHHHHHHcCC
Q 048766 489 DVASVMRNFMRERGL 503 (525)
Q Consensus 489 ~~A~~~~~~~~~~~~ 503 (525)
+.|++.|+...+...
T Consensus 693 ~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 693 SGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999998887654
No 380
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.81 E-value=77 Score=33.13 Aligned_cols=217 Identities=16% Similarity=0.071 Sum_probs=114.8
Q ss_pred hccccchHHHHHHHHHHHHhCCCchH-------HHHHHH-HHHHHcCCCHHHHHHHHHhcc--------CCCHhHHHHHH
Q 048766 277 IAGLSALTWGMLIHSCVIKQGLDASI-------VVASAL-LDMYSKCGQVEIADSMFRSLC--------RKNLVTWNAMI 340 (525)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l-~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~ 340 (525)
.....++.+|..+..++...-..|+. ..++++ .......|+++.|+++.+... ......+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34667888888888887655323221 112222 122345788888888776654 23455677778
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCCHhHH---HHH--HHHHcCCCC-CcchHHHHHHHhhhhhCCC-C----ChhHH
Q 048766 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTF---LNV--LAACSHTDI-PFDKVSEYFESMTKDYGIK-P----TVEHC 409 (525)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~---~~l--~~~~~~~~~-~~~~a~~~~~~~~~~~~~~-~----~~~~~ 409 (525)
.+..-.|++++|..+.+...+.. -.-+...+ ..+ ...+...|. ...+....+......+... | -..++
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a-~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMA-RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 88888999999998887765532 12222222 222 223444553 0223333333333221111 1 12334
Q ss_pred HHHHHHHhccCChHHHHHHHHH----h-CCCCch--hH--HHHHHHHHhcCCChHHHHHHHHHHHhhcCCC-hhH-HH--
Q 048766 410 CSMIRLMGQKGEVWRAQRMIRE----L-GFGSYG--VV--WRALLSASGACSDLDVARISAAEVIKLEGDS-DYV-YV-- 476 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~----~-~~~~~~--~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~-~~-- 476 (525)
..+..++.+ .+.+..-... - ...|.. .. +..++......|+.++|...+.++..+.-.+ +.+ |.
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444455544 3333222222 1 112221 11 2256677788999999999999988764211 111 21
Q ss_pred -H--HHHHHhhccChhHHHHHHHH
Q 048766 477 -M--LCNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 477 -~--l~~~~~~~g~~~~A~~~~~~ 497 (525)
. -......+|+.++|...+.+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 1 22234557888888877665
No 381
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=80.75 E-value=3.4 Score=36.50 Aligned_cols=59 Identities=7% Similarity=0.081 Sum_probs=31.3
Q ss_pred ccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 418 QKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
+.|+.++|..+|+.. ...|+ +..+..++...-..++.-+|-.+|-+++...|.|..++.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 556666666666653 33333 333333444444445566666666666666665555544
No 382
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.20 E-value=60 Score=31.52 Aligned_cols=160 Identities=14% Similarity=0.126 Sum_probs=100.5
Q ss_pred CCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC---CCHhHHHHHH
Q 048766 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR---KNLVTWNAMI 340 (525)
Q Consensus 264 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 340 (525)
+.|.....+++..+.......-++.+..++...| .+...+..++.+|... ..+.-..+|+++.+ .|++.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 4466667777777887777778888888887765 3455667777777777 55666667775542 2333334444
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCC------HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHH
Q 048766 341 TGYARNGDLTKVIELFEQLKTVRDLQPD------SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414 (525)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 414 (525)
.-|-+ ++.+.+...|.++... +-|. ...|.-+... -|++.+....+..++++..|..--...+..+-.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~---i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPEL---IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHh---ccccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 44444 6777777777776654 3331 1223333321 122367777777777766555555555666667
Q ss_pred HHhccCChHHHHHHHHHh
Q 048766 415 LMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~ 432 (525)
-|....++.+|++++..+
T Consensus 214 ~Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 214 KYSENENWTEAIRILKHI 231 (711)
T ss_pred HhccccCHHHHHHHHHHH
Confidence 777888888888888865
No 383
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=80.10 E-value=42 Score=30.54 Aligned_cols=121 Identities=11% Similarity=0.103 Sum_probs=82.1
Q ss_pred ChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcC------CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCC
Q 048766 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH------TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGE 421 (525)
Q Consensus 348 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 421 (525)
-++++..++++....+ .|.+......|.++.. .-+ |.....+|+.+. .+.|++.+-..-.-+..+..-
T Consensus 271 lI~eg~all~rA~~~~--~pGPYqlqAAIaa~HA~a~~aedtD-W~~I~aLYdaL~---~~apSPvV~LNRAVAla~~~G 344 (415)
T COG4941 271 LIDEGLALLDRALASR--RPGPYQLQAAIAALHARARRAEDTD-WPAIDALYDALE---QAAPSPVVTLNRAVALAMREG 344 (415)
T ss_pred HHHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHhhcccCCCC-hHHHHHHHHHHH---HhCCCCeEeehHHHHHHHhhh
Confidence 3578888899888877 5888777777776642 233 888888888887 446665433222334444555
Q ss_pred hHHHHHHHHHhCCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhH
Q 048766 422 VWRAQRMIRELGFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474 (525)
Q Consensus 422 ~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 474 (525)
++.++.+.+-++..|. ...+..-...+.+.|+.++|...|++++.+.++..+.
T Consensus 345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 6777788877743332 2333444566788999999999999999998854443
No 384
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.06 E-value=38 Score=29.19 Aligned_cols=111 Identities=12% Similarity=0.081 Sum_probs=67.3
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCHhHH-HHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccC
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTF-LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKG 420 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 420 (525)
|....++..|+.-|.+... +.|+..+| ..=+..+.+..+ ++.+..=-.... .+.|+ +.....+...+....
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~-~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKH-WEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhh-hhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhc
Confidence 4455678888888888887 77876444 444455555666 777766555554 45565 333445566666777
Q ss_pred ChHHHHHHHHHh-------CCCCchhHHHHHHHHHhcCCChHHHHHH
Q 048766 421 EVWRAQRMIREL-------GFGSYGVVWRALLSASGACSDLDVARIS 460 (525)
Q Consensus 421 ~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 460 (525)
.+++|+..+.+. ++.+....+..|..+-...=...+..++
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri 139 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRI 139 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHH
Confidence 788888887775 4444555666666554333333444443
No 385
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.79 E-value=23 Score=31.27 Aligned_cols=87 Identities=10% Similarity=0.087 Sum_probs=50.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-----
Q 048766 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS----- 313 (525)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 313 (525)
|++++..++|.+++.+.-+--+.--+..+......|-.|.+.+.+..+.++-....+..-.-+..-|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 567777777777776655443322222334445555566677777777666666655432333333555555443
Q ss_pred cCCCHHHHHHHH
Q 048766 314 KCGQVEIADSMF 325 (525)
Q Consensus 314 ~~g~~~~A~~~~ 325 (525)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 467777777766
No 386
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=79.76 E-value=2.4 Score=39.95 Aligned_cols=98 Identities=10% Similarity=0.004 Sum_probs=66.9
Q ss_pred HHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHH-HHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCC
Q 048766 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC-SMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACS 452 (525)
Q Consensus 376 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~ 452 (525)
+......+. ++.|..++.+++ .+.|+-..|. .=..++.+.+++..|+.=+..+ ...|. ...|..-+.++...+
T Consensus 11 an~~l~~~~-fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKV-FDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred Hhhhcccch-HHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 445556666 888888888888 4477544443 3346778888888887766654 44444 334444456677778
Q ss_pred ChHHHHHHHHHHHhhcCCChhHHHH
Q 048766 453 DLDVARISAAEVIKLEGDSDYVYVM 477 (525)
Q Consensus 453 ~~~~A~~~~~~~~~~~p~~~~~~~~ 477 (525)
++.+|...|+....+.|+++.+-..
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHH
Confidence 8888888888888888876665443
No 387
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=79.21 E-value=18 Score=25.95 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=34.4
Q ss_pred hccCChHHHHHHHHHh------CCCCc-----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 417 GQKGEVWRAQRMIREL------GFGSY-----GVVWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 417 ~~~g~~~~A~~~~~~~------~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
.+.|++.+|.+.+.+. ...+. ......+.......|++++|...+++++++-
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4667777776666654 11111 2333445566778899999999999998864
No 388
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=79.12 E-value=23 Score=26.02 Aligned_cols=87 Identities=11% Similarity=0.083 Sum_probs=57.6
Q ss_pred CchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 048766 17 GWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96 (525)
Q Consensus 17 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 96 (525)
...++|..+.+.+...+. ....+....+..+.+.|++++|+..=.....||...|-+|-.. +.|--+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 467899999999988874 4444444555567788999999655555566888888766553 7788888888888887
Q ss_pred hcCCCCCHhhH
Q 048766 97 RSEIYADAYSF 107 (525)
Q Consensus 97 ~~~~~p~~~~~ 107 (525)
.+| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 665 3433333
No 389
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.53 E-value=4.7 Score=24.04 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=18.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCC
Q 048766 237 SILTGYVNRNRVPEALHLFGEMQSKD 262 (525)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~m~~~~ 262 (525)
.+..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35667777777777777777777543
No 390
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=77.94 E-value=13 Score=26.13 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHH
Q 048766 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189 (525)
Q Consensus 123 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 189 (525)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.++++.+. +.+..+...+.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4455555555552 222222222222224466666666666666 5555666666666555554433
No 391
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=77.68 E-value=8.7 Score=21.70 Aligned_cols=29 Identities=17% Similarity=-0.115 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCChHHHHHH--HHHHHhhcC
Q 048766 441 WRALLSASGACSDLDVARIS--AAEVIKLEG 469 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~--~~~~~~~~p 469 (525)
|..+...+...|++++|+.+ ++-+..++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 33444555555666666666 324444444
No 392
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=77.52 E-value=26 Score=25.76 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=48.1
Q ss_pred chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361 (525)
Q Consensus 282 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (525)
..++|..|.+.+...+. ....+...-+..+.+.|+++.|...=.....||...|-+|- -.+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 44566666666665553 23333334455667788888884443444467777776553 3567777777777777766
Q ss_pred CCCCCCCHhHHH
Q 048766 362 VRDLQPDSVTFL 373 (525)
Q Consensus 362 ~~~~~p~~~~~~ 373 (525)
.| .|....|.
T Consensus 98 ~g--~~~~q~Fa 107 (116)
T PF09477_consen 98 SG--SPELQAFA 107 (116)
T ss_dssp -S--SHHHHHHH
T ss_pred CC--CHHHHHHH
Confidence 55 45444443
No 393
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=77.07 E-value=15 Score=28.30 Aligned_cols=69 Identities=9% Similarity=-0.078 Sum_probs=52.7
Q ss_pred CCchhHHHHHHHHHhcCC---ChHHHHHHHHHHHh-hcCC-ChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 435 GSYGVVWRALLSASGACS---DLDVARISAAEVIK-LEGD-SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 435 ~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.++..+-..+.+++.++. |..+.+.+++.+++ -.|+ .......|+..+.+.|+|+.++++.+.+.+..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 556666677888887655 57778889999997 3353 345566788899999999999999998877543
No 394
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=77.00 E-value=4.2 Score=34.37 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=36.8
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY 437 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 437 (525)
..+.++ .+.+.+++.+.. ++.| ....|..+...-.+.|+++.|.+.+++. ...|+
T Consensus 5 ~~~~~D-~~aaaely~qal---~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGD-AEAAAELYNQAL---ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCC-hHHHHHHHHHHh---hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 345566 677777777776 3334 4667777777777888888887777775 44444
No 395
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.87 E-value=74 Score=30.71 Aligned_cols=151 Identities=15% Similarity=0.097 Sum_probs=88.3
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCCHh-------HHHHHHHH-HcCCCCCcchHHHHHHHhhhhhCCCCC--hhHHHHHH
Q 048766 344 ARNGDLTKVIELFEQLKTVRDLQPDSV-------TFLNVLAA-CSHTDIPFDKVSEYFESMTKDYGIKPT--VEHCCSMI 413 (525)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~~~~~~p~~~-------~~~~l~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~ 413 (525)
.-.|++.+|++-...|.+--.-.|.+. ....++.. |+..+. ++.|..-|....+. --..| ...-..++
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~-~enAe~hf~~a~k~-t~~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNC-YENAEFHFIEATKL-TESIDLQAFCNLNLA 411 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcch-HHHHHHHHHHHHHh-hhHHHHHHHHHHhHH
Confidence 347888888888888776332334411 12233333 344566 88888888777654 11222 22233456
Q ss_pred HHHhccCChHHHHHHHHHhCCC-Cch--------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc-CC-----ChhHHHHH
Q 048766 414 RLMGQKGEVWRAQRMIRELGFG-SYG--------VVWRALLSASGACSDLDVARISAAEVIKLE-GD-----SDYVYVML 478 (525)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~~~~-~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~-----~~~~~~~l 478 (525)
-.|.+.|+.+.--++++.++-. ... ..+...+-.....+++.+|...+.+.++.. .. ..-.+..|
T Consensus 412 i~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLL 491 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLL 491 (629)
T ss_pred HHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence 6788888888888888877311 111 111111222346789999999999888765 11 11224456
Q ss_pred HHHHhhccChhHHHHHHH
Q 048766 479 CNLYTSHGNWDVASVMRN 496 (525)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~ 496 (525)
+.+....|+..++.....
T Consensus 492 s~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 492 SHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHhcchHHHHhccc
Confidence 666777788777765544
No 396
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.70 E-value=52 Score=28.87 Aligned_cols=240 Identities=13% Similarity=0.170 Sum_probs=126.0
Q ss_pred CChHHHHHHHhcCCC--CCc-----ccHHHHHHHHHhcCChhHHHHHHHHHhhC---CC--CCCHHHHHHHHHHhccccc
Q 048766 215 GDIEDAIMILSSMPS--PNS-----SSWNSILTGYVNRNRVPEALHLFGEMQSK---DV--PMDEYTFSTMLSGIAGLSA 282 (525)
Q Consensus 215 ~~~~~a~~~~~~~~~--~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~~~~~~~~~l~~~~~~~~~ 282 (525)
.++++|..-|+++.+ +.- ...-.++..+.+.|++++.+..|++++.- .+ .-+..+.+.++.-.+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 345556555555442 111 22345677778888888888777777531 11 2234455666655555555
Q ss_pred hHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC--------CC-------HhHHHHHHHH
Q 048766 283 LTWGMLIHSCVIKQ-----GLDASIVVASALLDMYSKCGQVEIADSMFRSLCR--------KN-------LVTWNAMITG 342 (525)
Q Consensus 283 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~l~~~ 342 (525)
.+.-..+|+.-.+. +-..--.+-+.|...|...|++.+..+++.++.. .| ...|..=+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 55555544433221 1011112334566777777888887777777641 11 1356666777
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHH-----cCCCCCcchHHHHHHHhhhhhCC--CCChh---HHHHH
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC-----SHTDIPFDKVSEYFESMTKDYGI--KPTVE---HCCSM 412 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~~~~~~~a~~~~~~~~~~~~~--~~~~~---~~~~l 412 (525)
|....+-..-..+|++...-...-|-+... .+++-| .+.|. +++|..-|-++.+.+.- .|... -|..|
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~-fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGE-FEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccch-HHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 887777777777887765533234554433 334433 34566 77776544444343211 23222 24555
Q ss_pred HHHHhccCChHHHHHHHH--Hh---CCCCchhHHHHHHHHHhcCCChHHHHHHHH
Q 048766 413 IRLMGQKGEVWRAQRMIR--EL---GFGSYGVVWRALLSASGACSDLDVARISAA 462 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~--~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 462 (525)
+.++.+.|= .-|+ ++ ...|.......++.+|.. ++..+-.+++.
T Consensus 279 ANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 279 ANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred HHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 666665541 0111 11 234455566677777754 45444444333
No 397
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.41 E-value=47 Score=28.23 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHH
Q 048766 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCS 411 (525)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 411 (525)
+.-++.+.+.+...+++...+.-.+ .+| |..+-..++..++-.|+ +++|..-++-.- .+.|+ ..+|..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVk---akPtda~~RhflfqLlcvaGd-w~kAl~Ql~l~a---~l~p~~t~~a~lyr~ 77 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVK---AKPTDAGGRHFLFQLLCVAGD-WEKALAQLNLAA---TLSPQDTVGASLYRH 77 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHh---cCCccccchhHHHHHHhhcch-HHHHHHHHHHHh---hcCcccchHHHHHHH
Confidence 4445667778888888888887777 455 45666677888888898 999987776654 33443 445555
Q ss_pred HHHH
Q 048766 412 MIRL 415 (525)
Q Consensus 412 l~~~ 415 (525)
++++
T Consensus 78 lir~ 81 (273)
T COG4455 78 LIRC 81 (273)
T ss_pred HHHH
Confidence 5543
No 398
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.92 E-value=58 Score=29.08 Aligned_cols=184 Identities=11% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 048766 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367 (525)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 367 (525)
.++..-...|.+.+..-+..+++.....-...+...+++-. .+..-..+|+.+|+.....+.+--
T Consensus 98 DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LV---------------k~N~~Vv~aL~L~~~~~~~~~Ii~ 162 (292)
T PF13929_consen 98 DYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLV---------------KRNKIVVEALKLYDGLNPDESIIF 162 (292)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHH---------------HhhHHHHHHHHHhhccCcccceee
Q ss_pred CHhHHHHHHHHHcC-CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh----CCCCchhHHH
Q 048766 368 DSVTFLNVLAACSH-TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSYGVVWR 442 (525)
Q Consensus 368 ~~~~~~~l~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~ 442 (525)
|..+...++..... .+.....-.++.+-+...++-.++..+....++.+++.+++.+-.++++.. +...|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhc------CCChhHHHHHHHHHhhcc
Q 048766 443 ALLSASGACSDLDVARISAAEVIKLE------GDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 443 ~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g 486 (525)
.++......||..-...+..+-.-+- +-++..-..+-.++.+.|
T Consensus 243 ~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~vd 292 (292)
T PF13929_consen 243 EFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKVD 292 (292)
T ss_pred HHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhcC
No 399
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.28 E-value=60 Score=28.87 Aligned_cols=81 Identities=14% Similarity=0.089 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHH-HHHHh
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML-CNLYT 483 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l-~~~~~ 483 (525)
++.....++..|.+.|++.+|...|-.-+ .|+......++..+ ..+..|.....|..- .--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~---------------~~~~~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEW---------------STKGYPSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHH---------------HHHTSS--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHH---------------HHhcCCcchhHHHHHHHHHHH
Confidence 67778888889999998888887764321 11111111122211 122234444444433 33466
Q ss_pred hccChhHHHHHHHHHHHc
Q 048766 484 SHGNWDVASVMRNFMRER 501 (525)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~ 501 (525)
..|+...|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 778899999888887765
No 400
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.08 E-value=8.9 Score=32.21 Aligned_cols=37 Identities=19% Similarity=-0.006 Sum_probs=28.0
Q ss_pred CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 433 GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 433 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
...|++..+..++.++...|+.++|.+..+++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5567777777777777777777777777777777777
No 401
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.76 E-value=42 Score=29.68 Aligned_cols=86 Identities=8% Similarity=0.138 Sum_probs=47.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc--CCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHH--
Q 048766 75 LISGYVQSGKYRKALNLFVELERS--EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG-- 150 (525)
Q Consensus 75 ll~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 150 (525)
=|.+++..++|.+++...-+--+. .++|. ....-|-.|.+.+.+..+.++-....+.--.-+..-|.+++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 356777777777776655444332 12332 333334446677777777777766655322222334555555544
Q ss_pred ---hcCCHHHHHHHH
Q 048766 151 ---KCGSVEDAIGVF 162 (525)
Q Consensus 151 ---~~g~~~~a~~~~ 162 (525)
-.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 347777777665
No 402
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=73.32 E-value=55 Score=28.05 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=50.0
Q ss_pred cchHHHHHHHhhhhh---CCCCC--hhHHHHHHHHHhccCChHH-------HHHHHHHh----C--CC--CchhHHHHHH
Q 048766 386 FDKVSEYFESMTKDY---GIKPT--VEHCCSMIRLMGQKGEVWR-------AQRMIREL----G--FG--SYGVVWRALL 445 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~-------A~~~~~~~----~--~~--~~~~~~~~l~ 445 (525)
+++|++.+..+.-.. +-+|. ...+..+++.|...|+.+. |.+.|++. . .. .+......++
T Consensus 93 ~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLig 172 (214)
T PF09986_consen 93 LEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIG 172 (214)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Confidence 555555444332221 22333 3455667778877777444 44555443 1 11 1234445566
Q ss_pred HHHhcCCChHHHHHHHHHHHhhc
Q 048766 446 SASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
....+.|++++|.+.|.+++...
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcCC
Confidence 77788999999999999999865
No 403
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.26 E-value=1.3e+02 Score=31.93 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=18.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcCCC
Q 048766 40 VSTALMGFYRKINSLADAHKMFVEIPQ 66 (525)
Q Consensus 40 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 66 (525)
-|..|+..|...|+.++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 456667777777777777777766554
No 404
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=72.07 E-value=11 Score=33.63 Aligned_cols=81 Identities=6% Similarity=0.005 Sum_probs=58.3
Q ss_pred CCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHH-HHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHH
Q 048766 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRA-LLSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477 (525)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 477 (525)
.+..|+..|...+.--.+.|.+.+...++.+. ...| +...|.. ...-+...++++.+..++.+.++++|++|..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 45567777777776666777888888888876 3334 4455543 2333566899999999999999999999988775
Q ss_pred HHHH
Q 048766 478 LCNL 481 (525)
Q Consensus 478 l~~~ 481 (525)
..+.
T Consensus 182 yfr~ 185 (435)
T COG5191 182 YFRM 185 (435)
T ss_pred HHHH
Confidence 5443
No 405
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=71.82 E-value=16 Score=32.13 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=51.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 443 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
.+-..+.+.++++.|..+.++.+.++|+++.-..--|.+|.+.|...-|+.-++...+..+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 34456778899999999999999999999988888999999999999998888877666543
No 406
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=71.72 E-value=34 Score=24.41 Aligned_cols=44 Identities=11% Similarity=0.030 Sum_probs=23.6
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 458 RISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 458 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
+..+++.++.+|+|......++..+...|++++|++.+-.+.+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34445555555655555556666666666666666555555544
No 407
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.46 E-value=26 Score=31.50 Aligned_cols=100 Identities=14% Similarity=0.076 Sum_probs=72.6
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhh
Q 048766 67 PSVVSWNSLISGYVQSGKYRKALNLFVELERSE---IYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIAN 143 (525)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 143 (525)
..+.+-..++.......+++.+...+=+++..- ..|+. +-...++.|. .-+++++..++..=++.|+-||..+++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHH
Confidence 344555666666666778888888887776531 12222 2233344443 346778999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhhccCC
Q 048766 144 CLIDMYGKCGSVEDAIGVFGEMIDK 168 (525)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~ 168 (525)
.+|+.+.+.+++.+|.++.-.|...
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999888777543
No 408
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=70.86 E-value=92 Score=29.12 Aligned_cols=191 Identities=15% Similarity=0.180 Sum_probs=110.2
Q ss_pred CCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHH-HHHhhCCCCCCCHhHHHHH
Q 048766 297 GLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF-EQLKTVRDLQPDSVTFLNV 375 (525)
Q Consensus 297 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~p~~~~~~~l 375 (525)
+...+..++..++..|...++|+.--+.+..+. .+.|+...|+..+ ++...--+-.||..|-..+
T Consensus 47 D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Ls--------------kkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~l 112 (439)
T KOG1498|consen 47 DMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLS--------------KKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKL 112 (439)
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH--------------HHhhHHHHHHHHHHHHHHHhccCCCCchhHHHH
Confidence 344566677778888888888877655443322 3455555554422 2222211135565655555
Q ss_pred HHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCc--------hhHHHHHHHH
Q 048766 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY--------GVVWRALLSA 447 (525)
Q Consensus 376 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~l~~~ 447 (525)
+..+..--. -++|-+.. ....-..|...+...|+.++|..++.+.+.+.- ......-++.
T Consensus 113 i~tLr~Vte-----gkIyvEvE-------RarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrK 180 (439)
T KOG1498|consen 113 IETLRTVTE-----GKIYVEVE-------RARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRL 180 (439)
T ss_pred HHHHHHhhc-----CceEEeeh-------HHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHH
Confidence 554432110 00111111 112223456677789999999999888732111 1222334567
Q ss_pred HhcCCChHHHHHHHHHHHhhcCCCh-------hHHHHHHHHHhhccChhHHHHHHHHHHHcCCccCCcccEEE
Q 048766 448 SGACSDLDVARISAAEVIKLEGDSD-------YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513 (525)
Q Consensus 448 ~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 513 (525)
|...+||-.|.-+-+++....-+.+ ..|..+.....+.+.+=++-+.|+..-+.|-.+..+--|+.
T Consensus 181 OG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~ 253 (439)
T KOG1498|consen 181 CLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIE 253 (439)
T ss_pred HHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhh
Confidence 8888999999888888876442222 33667777788888888999999888776665553333443
No 409
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=70.00 E-value=7.9 Score=36.73 Aligned_cols=102 Identities=10% Similarity=0.084 Sum_probs=68.4
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHH-HHHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHh
Q 048766 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV-LAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMG 417 (525)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 417 (525)
+..+...++++.|+.++.++.+ +.||...|-.. ..++.+.++ +..|+.=+.++.+. .|+ ...|..=+.++.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~-~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVES-FGGALHDALKAIEL---DPTYIKAYVRRGTAVM 83 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeech-hhhHHHHHHhhhhc---CchhhheeeeccHHHH
Confidence 4556677889999999999999 88876555444 377888888 88888877777643 453 223333334455
Q ss_pred ccCChHHHHHHHHHh-CCCCchhHHHHHHHHH
Q 048766 418 QKGEVWRAQRMIREL-GFGSYGVVWRALLSAS 448 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~ 448 (525)
+.+++.+|...|+.. ...|+..-....+.-|
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 566777777777765 5567666555555444
No 410
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.25 E-value=25 Score=26.68 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHH
Q 048766 90 NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132 (525)
Q Consensus 90 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 132 (525)
+-++.+...++.|++......+++|.+.+++..|..+|+-.+.
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444455666666666666666666666666666665543
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=69.15 E-value=24 Score=29.61 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=20.8
Q ss_pred CCCCChhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
...|++..|..++..+...|+.++|.+..+++
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566666666666666666666666666655
No 412
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=68.90 E-value=38 Score=23.86 Aligned_cols=65 Identities=9% Similarity=0.065 Sum_probs=34.4
Q ss_pred hhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHH
Q 048766 22 CQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKA 88 (525)
Q Consensus 22 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 88 (525)
+.++++...+.|+- +......+-.+-...|+.+.|.+++..++ ..+..|..++.++-..|+-.-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 44556666666532 22222222222224466666777666666 5555666666666665554433
No 413
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=68.90 E-value=1e+02 Score=28.96 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=32.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCC--CHhHHHHHHHHHcCCCCCcchHHHHHHHhh
Q 048766 340 ITGYARNGDLTKVIELFEQLKTVRDLQP--DSVTFLNVLAACSHTDIPFDKVSEYFESMT 397 (525)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 397 (525)
+..+.+.|-+..|+++.+-+.. +.| |+......|..|+-..++++-.+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 4566677777777777777777 445 344444555555433332666666666543
No 414
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=68.35 E-value=19 Score=22.60 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=20.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHH
Q 048766 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374 (525)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 374 (525)
+.-++.+.|+++.|.+..+.+.+ +.|+......
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~---~eP~N~Qa~~ 39 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE---IEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH---HTTS-HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh---hCCCcHHHHH
Confidence 44566777777777777777777 6676544433
No 415
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.40 E-value=47 Score=25.52 Aligned_cols=42 Identities=12% Similarity=0.088 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhc--CCChhHHHHHHHHHhhccChhHHHHHHHH
Q 048766 456 VARISAAEVIKLE--GDSDYVYVMLCNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 456 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (525)
.+.++|..+...+ -..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7788888887754 45667788888888888888888888864
No 416
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.29 E-value=60 Score=25.61 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=63.6
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCHhhHHHHHHHHcccCC-hHHHHHHHHHHHHcccCCCcchhhH
Q 048766 71 SWNSLISGYVQSGKYRKALNLFVELERSE-----IYADAYSFTSALAACGQLGS-LQLGMAIHSKIVKYSLERGVVIANC 144 (525)
Q Consensus 71 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 144 (525)
..|.++.-....+++...+.+++.+..-. -..+..+|++++.+...... --.+..+|..+.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 46788888888888888888888875421 13466789999999977666 4457788899988888999999999
Q ss_pred HHHHHHhc
Q 048766 145 LIDMYGKC 152 (525)
Q Consensus 145 l~~~~~~~ 152 (525)
++.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 99987654
No 417
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=67.13 E-value=1.6e+02 Score=30.31 Aligned_cols=85 Identities=18% Similarity=0.208 Sum_probs=35.8
Q ss_pred HHHHHhCCChHHHHHHHhcC--CCCCcchHHHHHHHHHhcCChHHH-HHHHhcCC-CCCcccHHHHHHHHHh---cCChh
Q 048766 177 IAASARNGNLELAFGFLHRL--PNPDTISYNEVINGIAQFGDIEDA-IMILSSMP-SPNSSSWNSILTGYVN---RNRVP 249 (525)
Q Consensus 177 ~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~-~~~~~~~~~l~~~~~~---~~~~~ 249 (525)
...+.-.|.++.|++.+-+. ...+...+...+..|.-.+-.+.. ..++..-. .+...-+..||..|.+ ..++.
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~ 344 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITDPR 344 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTTT-HH
T ss_pred HHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccCHH
Confidence 34455678888888887772 222333333333322211111111 11111111 1222457777777775 45677
Q ss_pred HHHHHHHHHhhC
Q 048766 250 EALHLFGEMQSK 261 (525)
Q Consensus 250 ~a~~~~~~m~~~ 261 (525)
+|+++|--+...
T Consensus 345 ~Al~Y~~li~~~ 356 (613)
T PF04097_consen 345 EALQYLYLICLF 356 (613)
T ss_dssp HHHHHHHGGGGS
T ss_pred HHHHHHHHHHHc
Confidence 788887766654
No 418
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=66.29 E-value=1.1e+02 Score=28.26 Aligned_cols=143 Identities=9% Similarity=-0.006 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhc---cCChHH
Q 048766 349 LTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ---KGEVWR 424 (525)
Q Consensus 349 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~ 424 (525)
.+.-+.+++++.+. .| +......++..+.+... .++..+-|+++... .+-+...|...++.... .-.+.+
T Consensus 47 ~E~klsilerAL~~---np~~~~L~l~~l~~~~~~~~-~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~ 120 (321)
T PF08424_consen 47 AERKLSILERALKH---NPDSERLLLGYLEEGEKVWD-SEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSD 120 (321)
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHH
Confidence 46778899999985 45 45666777888888877 88888999999864 23357777777765543 234666
Q ss_pred HHHHHHHh-------CCCC--------c--h---hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh
Q 048766 425 AQRMIREL-------GFGS--------Y--G---VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484 (525)
Q Consensus 425 A~~~~~~~-------~~~~--------~--~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 484 (525)
...+|.+. .... + . ..+..+...+.+.|..+.|..+++-+++++--.|....
T Consensus 121 ~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~-------- 192 (321)
T PF08424_consen 121 VRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLS-------- 192 (321)
T ss_pred HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccc--------
Confidence 66666653 1111 1 1 12233344456789999999999999998721122111
Q ss_pred ccChhHHHHHHHHHHHcCCcc
Q 048766 485 HGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~ 505 (525)
.....+....|+...+.+++.
T Consensus 193 ~~~~~~~~~~fe~FWeS~vpR 213 (321)
T PF08424_consen 193 SSSFSERLESFEEFWESEVPR 213 (321)
T ss_pred cccHHHHHHHHHHHhCcCCCC
Confidence 111126677777777777653
No 419
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=64.81 E-value=93 Score=26.90 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=55.9
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCHh--HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccC
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPDSV--TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 420 (525)
+...|+++.|+++.+-+.++|...|+.+ ++-+++ .++....-....+. |-+.++.....+...-....
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v---------aeev~~~A~~~~~a-g~~~e~~~~~~~~~l~~~~d 162 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV---------AEEVANAALKAASA-GESVEPYFLRVFLDLTTEWD 162 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH---------HHHHHHHHHHHHHc-CCCCChHHHHHHHHHHhcCC
Confidence 3568999999999999999985566532 111111 12222222222222 33334433322222111111
Q ss_pred ChHHHHHHHHHhCCCCchhHHHHHHHHH---------hcCCChHHHHHHHHHHHhhcC
Q 048766 421 EVWRAQRMIRELGFGSYGVVWRALLSAS---------GACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 421 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~A~~~~~~~~~~~p 469 (525)
|+.......+...+..+ ...++...|..+++++.+++|
T Consensus 163 -----------mpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 163 -----------MPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND 209 (230)
T ss_pred -----------CChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC
Confidence 12122233444455555 244678899999999999998
No 420
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=63.79 E-value=61 Score=24.72 Aligned_cols=45 Identities=7% Similarity=0.037 Sum_probs=26.3
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 048766 251 ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295 (525)
Q Consensus 251 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 295 (525)
..+-+......++.|++......+++|.+.+++..|..+++-+..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444455555666666666666666666666666666655543
No 421
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.97 E-value=19 Score=31.90 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=50.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCCHh
Q 048766 40 VSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVELER-----SEIYADAY 105 (525)
Q Consensus 40 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~ 105 (525)
+.......|..+|.+.+|.++-+.... .+...|-.++..+...|+--.|.+-++++.+ .|+..+..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 445667778889999999999888776 5667788899999999998888888887754 35554443
No 422
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=62.67 E-value=86 Score=27.37 Aligned_cols=50 Identities=8% Similarity=0.036 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHhh-----cCCChhHHHH---HHHH-HhhccChhHHHHHHHHHHHcCC
Q 048766 454 LDVARISAAEVIKL-----EGDSDYVYVM---LCNL-YTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 454 ~~~A~~~~~~~~~~-----~p~~~~~~~~---l~~~-~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.+.|.+.|+++.+. .|.+|.-+.. .+.. |.-.|+.++|.++-++..+..+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 35667777776653 3555543322 2222 3457888888877777665443
No 423
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.59 E-value=70 Score=32.00 Aligned_cols=88 Identities=13% Similarity=-0.005 Sum_probs=67.2
Q ss_pred HhccCChHHHHHHHHH-hCCCC-c------hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccC
Q 048766 416 MGQKGEVWRAQRMIRE-LGFGS-Y------GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 416 ~~~~g~~~~A~~~~~~-~~~~~-~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 487 (525)
..+..++..+.+.|.. +..-| | ......+.-.|....+.|.|.++++++-+.+|.++..-.....+....|.
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 3466788888888875 31111 1 23345566667788899999999999999999999988888999999999
Q ss_pred hhHHHHHHHHHHHcCC
Q 048766 488 WDVASVMRNFMRERGL 503 (525)
Q Consensus 488 ~~~A~~~~~~~~~~~~ 503 (525)
-++|+.........-.
T Consensus 444 Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 444 SEEALTCLQKIKSSED 459 (872)
T ss_pred hHHHHHHHHHHHhhhc
Confidence 9999998887765433
No 424
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.56 E-value=62 Score=24.06 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKT 361 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (525)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578888889999999999999988877
No 425
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.28 E-value=15 Score=33.38 Aligned_cols=110 Identities=14% Similarity=0.003 Sum_probs=46.7
Q ss_pred cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCch-hHHHHHHHHHhcCCChHHHHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYG-VVWRALLSASGACSDLDVARISAAE 463 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~ 463 (525)
++.|++.|...++. -++....|..-..++.+.+++..|++=+... .++||. ..|..-..+....|++++|...+..
T Consensus 130 ~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 130 FDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred hhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 55555555544421 1122333333344445555555555544443 333332 1222222333345566666666666
Q ss_pred HHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 464 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
+.+++- +..+-..|-.+.-+.+..++=...+++.
T Consensus 208 a~kld~-dE~~~a~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 208 ACKLDY-DEANSATLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHhccc-cHHHHHHHHHhccchhhhhhchhHHHHH
Confidence 655553 2333333333333444444443333333
No 426
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.40 E-value=83 Score=28.58 Aligned_cols=152 Identities=5% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhh
Q 048766 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397 (525)
Q Consensus 318 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 397 (525)
..+|+++|+...+....+|+ +.++...--...+.+.+.. ..--...-..+.....+.|+ ..+|.+.++.+.
T Consensus 232 i~~AE~l~k~ALka~e~~yr-------~sqq~qh~~~~~da~~rRD-tnvl~YIKRRLAMCARklGr-lrEA~K~~RDL~ 302 (556)
T KOG3807|consen 232 IVDAERLFKQALKAGETIYR-------QSQQCQHQSPQHEAQLRRD-TNVLVYIKRRLAMCARKLGR-LREAVKIMRDLM 302 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------hHHHHhhhccchhhhhhcc-cchhhHHHHHHHHHHHHhhh-HHHHHHHHHHHh
Q ss_pred hhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHHHHHHHHHhcCCChHH------------------HH
Q 048766 398 KDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASGACSDLDV------------------AR 458 (525)
Q Consensus 398 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~------------------A~ 458 (525)
++..+..-......|++++....-+.+...++-+. .+......-...-.++.+..-+.+ |.
T Consensus 303 ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~Av 382 (556)
T KOG3807|consen 303 KEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAV 382 (556)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHH
Q ss_pred HHHHHHHhhcCCChhHHHHH
Q 048766 459 ISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 459 ~~~~~~~~~~p~~~~~~~~l 478 (525)
+...++.+.+|--|..+..+
T Consensus 383 EAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 383 EAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred HHHHHHhhcCCCCcHHHHHH
No 427
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.39 E-value=1.2e+02 Score=28.76 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=7.7
Q ss_pred cCCCHHHHHHHHHhcc
Q 048766 314 KCGQVEIADSMFRSLC 329 (525)
Q Consensus 314 ~~g~~~~A~~~~~~~~ 329 (525)
+.+++..|.++++.+.
T Consensus 143 n~~~y~aA~~~l~~l~ 158 (379)
T PF09670_consen 143 NRYDYGAAARILEELL 158 (379)
T ss_pred hcCCHHHHHHHHHHHH
Confidence 4445555555444443
No 428
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.28 E-value=55 Score=24.32 Aligned_cols=40 Identities=18% Similarity=0.368 Sum_probs=30.0
Q ss_pred ChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260 (525)
Q Consensus 216 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 260 (525)
+++++++.+.+ ..-|..++..|...|..++|++++.+...
T Consensus 28 ~~~~~e~~L~~-----~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKE-----HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHH-----cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 34445554432 23488999999999999999999998877
No 429
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=61.24 E-value=11 Score=28.89 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=22.9
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 048766 81 QSGKYRKALNLFVELERSEIYADAYSFTSALAAC 114 (525)
Q Consensus 81 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 114 (525)
..|.-..|..+|++|.++|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345666788888888888888874 66666544
No 430
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=60.53 E-value=68 Score=23.89 Aligned_cols=39 Identities=15% Similarity=0.024 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHH
Q 048766 456 VARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494 (525)
Q Consensus 456 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (525)
.+.+.+.+...+.|+.+..+..|+.-+.....|+++..-
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~k 100 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKK 100 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467788888888887766666666665555555554433
No 431
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=60.28 E-value=56 Score=26.91 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=12.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 048766 76 ISGYVQSGKYRKALNLFVELER 97 (525)
Q Consensus 76 l~~~~~~~~~~~A~~~~~~m~~ 97 (525)
+..|.+.|.+++|.+++++..+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3445566666666666666554
No 432
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.36 E-value=15 Score=25.22 Aligned_cols=13 Identities=0% Similarity=0.031 Sum_probs=6.0
Q ss_pred cchHHHHHHHhhh
Q 048766 386 FDKVSEYFESMTK 398 (525)
Q Consensus 386 ~~~a~~~~~~~~~ 398 (525)
.++|+..|+...+
T Consensus 22 ~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 22 TQQALQKWRKALE 34 (80)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444443
No 433
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=59.28 E-value=16 Score=32.48 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=18.7
Q ss_pred CCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHH
Q 048766 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 451 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (525)
.|+.++|..+|+.++++.|+++.++..++......++.-+|-++|
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhh
Confidence 344444444444444444444444444444443334443443333
No 434
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=59.15 E-value=71 Score=28.44 Aligned_cols=106 Identities=15% Similarity=0.091 Sum_probs=60.4
Q ss_pred HHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-------CCCCchh-HHHHHHHHHhcCCChHHHHHHHHHH
Q 048766 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-------GFGSYGV-VWRALLSASGACSDLDVARISAAEV 464 (525)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~ 464 (525)
+++..+..|-.-....+..+++-|+..++.+.+.+.+.+. +.+-|.. +-..++-.|....-.++-++..+.+
T Consensus 102 i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~ 181 (412)
T COG5187 102 IREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDI 181 (412)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3333333233334667788889999999999998888764 3333322 1222333444445567777788888
Q ss_pred HhhcCCChh--HHHH-HHHHHhhccChhHHHHHHHHH
Q 048766 465 IKLEGDSDY--VYVM-LCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 465 ~~~~p~~~~--~~~~-l~~~~~~~g~~~~A~~~~~~~ 498 (525)
++.+.+-.. -|-. -+-.+....++.+|-.++...
T Consensus 182 iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~ 218 (412)
T COG5187 182 IEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDI 218 (412)
T ss_pred HHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 887763211 1111 233334455677777766544
No 435
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=58.31 E-value=1.7e+02 Score=27.71 Aligned_cols=61 Identities=8% Similarity=-0.103 Sum_probs=27.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhC--CCCch----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIRELG--FGSYG----VVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
.+.|++.|...+.++.|..+..+.. ...+. .....++.-.+-++++..|.+.+-.++...|
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 3444455555555555555555541 11111 1111222333345555666555555555554
No 436
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.52 E-value=42 Score=21.84 Aligned_cols=24 Identities=8% Similarity=-0.036 Sum_probs=11.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHH
Q 048766 442 RALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
...+.++...|++++|.++.+++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455555555555555555443
No 437
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=57.51 E-value=30 Score=18.96 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 453 DLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 453 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
.++.|..+|++.+..-| ++..|...+.
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 46778888888877777 5666665543
No 438
>PF13934 ELYS: Nuclear pore complex assembly
Probab=57.20 E-value=1.3e+02 Score=26.07 Aligned_cols=33 Identities=18% Similarity=-0.003 Sum_probs=14.9
Q ss_pred hccCChHHHHHHHHHhCCCCchhHHHHHHHHHh
Q 048766 417 GQKGEVWRAQRMIRELGFGSYGVVWRALLSASG 449 (525)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 449 (525)
...+.+.+|..+.+..........+..++..+.
T Consensus 151 La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 344555555555555432222334444444443
No 439
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=56.88 E-value=57 Score=25.85 Aligned_cols=63 Identities=5% Similarity=0.013 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcC
Q 048766 90 NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153 (525)
Q Consensus 90 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 153 (525)
++.+.+.+.|++++..- ..++..+...++.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34556667777766553 3456666667677888888888888776555555444455555555
No 440
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=56.64 E-value=51 Score=31.30 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=25.9
Q ss_pred HHHHHHHhCCChHHHHHHHhcC-----------CCCCcchHHHHHHHHHhcCChHHHHHHHhc
Q 048766 175 SVIAASARNGNLELAFGFLHRL-----------PNPDTISYNEVINGIAQFGDIEDAIMILSS 226 (525)
Q Consensus 175 ~l~~~~~~~~~~~~a~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 226 (525)
.|++.++-.|++..|++.++.+ +.-...++.-+.-+|.-.+++.+|.+.|..
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~ 189 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQ 189 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544 112333444455555555555555555543
No 441
>PF13934 ELYS: Nuclear pore complex assembly
Probab=55.62 E-value=1.4e+02 Score=25.90 Aligned_cols=119 Identities=13% Similarity=0.086 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHH
Q 048766 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430 (525)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (525)
.+..-|..... ++|....+..-+..+ ..++ +++|.+.+-.- .+.|+ ....++.++.+.|+...|+.+++
T Consensus 64 ~~~~~Fa~~f~---ip~~~~~~~~g~W~L-D~~~-~~~A~~~L~~p----s~~~~--~~~~Il~~L~~~~~~~lAL~y~~ 132 (226)
T PF13934_consen 64 ELAESFARAFG---IPPKYIKFIQGFWLL-DHGD-FEEALELLSHP----SLIPW--FPDKILQALLRRGDPKLALRYLR 132 (226)
T ss_pred cHHHHHHHHhC---CCHHHHHHHHHHHHh-ChHh-HHHHHHHhCCC----CCCcc--cHHHHHHHHHHCCChhHHHHHHH
Confidence 34444444433 555444333333322 3355 77887777332 22232 23357788888899999999999
Q ss_pred HhCCCCchh-HHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 431 ELGFGSYGV-VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 431 ~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
..+-..... ....+... ..++.+.+|..+.+..-+.. ....+..+...+.
T Consensus 133 ~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~--~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 133 AVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDEL--RRRLFEQLLEHCL 183 (226)
T ss_pred hcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhh--hHHHHHHHHHHHH
Confidence 984333332 33333333 66788888888777655422 1344555555554
No 442
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.21 E-value=2.9e+02 Score=29.54 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=23.5
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048766 71 SWNSLISGYVQSGKYRKALNLFVELER 97 (525)
Q Consensus 71 ~~~~ll~~~~~~~~~~~A~~~~~~m~~ 97 (525)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 588888899999999999999988876
No 443
>PRK12798 chemotaxis protein; Reviewed
Probab=54.44 E-value=2e+02 Score=27.41 Aligned_cols=185 Identities=9% Similarity=0.088 Sum_probs=121.3
Q ss_pred HHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHH--hcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcch
Q 048766 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYA--RNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDK 388 (525)
Q Consensus 311 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 388 (525)
....-|+++....++..-..++.. ..++.+.. -.|+.+++.+.+..+.... .++....+..|+.+-.....+..+
T Consensus 90 y~lSGGnP~vlr~L~~~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~-l~~~lg~~laLv~a~l~~~~dP~~ 166 (421)
T PRK12798 90 YLLSGGNPATLRKLLARDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEY-LPAELGAYLALVQGNLMVATDPAT 166 (421)
T ss_pred hHhcCCCHHHHHHHHHcCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhh-cCchhhhHHHHHHHHHhcccCHHH
Confidence 344567777777777766544332 22333322 3789999999999988766 777788888888887666656999
Q ss_pred HHHHHHHhhhhhCCCCChhH----HHHHHHHHhccCChHHHHHHH----HHhCCCCchhHH-HHHHHHHhcCCChHHHHH
Q 048766 389 VSEYFESMTKDYGIKPTVEH----CCSMIRLMGQKGEVWRAQRMI----RELGFGSYGVVW-RALLSASGACSDLDVARI 459 (525)
Q Consensus 389 a~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~ 459 (525)
|+++|+... =..|..-. ...-+......|+.+++..+- ++....|-..-| ..+..+..+.++-..-..
T Consensus 167 Al~~lD~aR---LlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~ 243 (421)
T PRK12798 167 ALKLLDQAR---LLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR 243 (421)
T ss_pred HHHHHHHHH---HhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH
Confidence 999999986 33564322 223344556789888866554 444555554433 444555555554433333
Q ss_pred HHHHHHh-hcCC-ChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 460 SAAEVIK-LEGD-SDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 460 ~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
+..++. ++|+ -...|..+++.-.-.|+.+-|.-.-++.....
T Consensus 244 -l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 244 -LVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred -HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 555554 4553 34668888999999999999988888777654
No 444
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=53.42 E-value=2.2e+02 Score=27.48 Aligned_cols=172 Identities=9% Similarity=0.008 Sum_probs=80.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCH
Q 048766 76 ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155 (525)
Q Consensus 76 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 155 (525)
++++...| ..++..+....... ++...+.....++....+......+.+.+ . .++..+-...++++...++.
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L-~---d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL-Q---AGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh-c---CCCHHHHHHHHHHHhcCCch
Confidence 55666666 44565555555322 23333333333333222222122222222 1 24444566667777666665
Q ss_pred HHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccH
Q 048766 156 EDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSW 235 (525)
Q Consensus 156 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 235 (525)
.....+..-+..++.......+.++...+. +-...+..-+.+++..+-..-+.++...++.+....+..-....|...-
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR 195 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVR 195 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHH
Confidence 555555555555555554445555544332 1111222222455555556666666655554333333333334555555
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 048766 236 NSILTGYVNRNRVPEALHLFGE 257 (525)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~ 257 (525)
..-+.+....|. ..|...+..
T Consensus 196 ~aA~~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 196 FAALEAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred HHHHHHHHHcCC-HhHHHHHHH
Confidence 555555566666 455555444
No 445
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.04 E-value=43 Score=20.39 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=30.4
Q ss_pred HHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHH
Q 048766 10 LRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGF 47 (525)
Q Consensus 10 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 47 (525)
|...-+.|-..++..+++.|.+.|+--+...+..++..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 44455788888999999999999988888888777653
No 446
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=52.70 E-value=1.5e+02 Score=25.48 Aligned_cols=55 Identities=9% Similarity=0.127 Sum_probs=24.9
Q ss_pred HHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHH----HhccCChHHHHHHHHH
Q 048766 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL----MGQKGEVWRAQRMIRE 431 (525)
Q Consensus 375 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~ 431 (525)
-+......|+ .+.|++....+... -+.-|...+..|... ..|.|..++|+++.+.
T Consensus 70 ~Ir~~I~~G~-Ie~Aie~in~l~Pe-iLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 70 QIRRAIEEGQ-IEEAIEKVNQLNPE-ILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHhcc-HHHHHHHHHHhChH-HHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444455555 66666555554433 333333222222221 2355555555555543
No 447
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=52.66 E-value=1e+02 Score=23.42 Aligned_cols=60 Identities=13% Similarity=0.029 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhh-------cCCChhH----HHHHHHHHhhccChhHHHHHHHHH
Q 048766 439 VVWRALLSASGACSDLDVARISAAEVIKL-------EGDSDYV----YVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 439 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
..+..|..++...|++++++...++++.. ..+.-.. ...-+.++...|+.++|+..|+..
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34455677788889998888877777653 3333333 345567788889999999988754
No 448
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.46 E-value=52 Score=20.05 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=15.6
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 048766 81 QSGKYRKALNLFVELERSEIYADAYSFTSAL 111 (525)
Q Consensus 81 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 111 (525)
+.|-..++..++++|.+.|...+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444455555555555555555544444443
No 449
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.90 E-value=1.7e+02 Score=30.79 Aligned_cols=130 Identities=16% Similarity=0.149 Sum_probs=89.7
Q ss_pred HHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHH
Q 048766 311 MYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390 (525)
Q Consensus 311 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~ 390 (525)
.+..+|+++.|.+.-.++- +..+|..|+.....+|+.+-|+..|++.+. |..|-..|.-.|+ .++..
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn----------fekLsfLYliTgn-~eKL~ 718 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN----------FEKLSFLYLITGN-LEKLS 718 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh----------hhheeEEEEEeCC-HHHHH
Confidence 4567899999988777664 456899999999999999999999998776 4455556677787 77777
Q ss_pred HHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
++.+.+..+ .|..... ..-.-.|+.++=.++++..+.-|- .|. .-..+|.-++|.++.++.-.
T Consensus 719 Km~~iae~r----~D~~~~~---qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 719 KMMKIAEIR----NDATGQF---QNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHhh----hhhHHHH---HHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 776655432 2322211 111236888988888888754332 221 12346888899998888776
No 450
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.76 E-value=1.2e+02 Score=30.14 Aligned_cols=89 Identities=11% Similarity=0.063 Sum_probs=54.9
Q ss_pred HHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHH-ccCCHHHHHHHHhcCCC-------CCcccHHHHHHHH
Q 048766 8 HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYR-KINSLADAHKMFVEIPQ-------PSVVSWNSLISGY 79 (525)
Q Consensus 8 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~-------~~~~~~~~ll~~~ 79 (525)
.-+..+.+.|.+..|+++...+.+.....|+.....+|+.|+ +..++...+++++.... ||..--.++...|
T Consensus 347 r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~ 426 (665)
T KOG2422|consen 347 RYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFF 426 (665)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHH
Confidence 345566777888888888888888875557877778888874 55667777777765532 4443333344444
Q ss_pred HhcCC---hHHHHHHHHHHH
Q 048766 80 VQSGK---YRKALNLFVELE 96 (525)
Q Consensus 80 ~~~~~---~~~A~~~~~~m~ 96 (525)
.+... -+.|...+.+..
T Consensus 427 l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 427 LRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred HhcCChhhHHHHHHHHHHHH
Confidence 44433 234444444443
No 451
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.92 E-value=31 Score=30.95 Aligned_cols=36 Identities=33% Similarity=0.394 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhH
Q 048766 72 WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107 (525)
Q Consensus 72 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 107 (525)
|+.-|....+.||+++|+.++++.++.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 556666666667777777777776666654333333
No 452
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=50.56 E-value=54 Score=23.02 Aligned_cols=62 Identities=6% Similarity=0.130 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHH
Q 048766 123 GMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188 (525)
Q Consensus 123 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 188 (525)
...++..+.+.|+ .+. ...-...+...+.+.+.++++.++.++..+|..+..++...|...-
T Consensus 18 ~~~v~~~L~~~~V-lt~---~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 18 PKYLWDHLLSRGV-FTP---DMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred HHHHHHHHHhcCC-CCH---HHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 3446666666653 222 1122222344556777777777777777777777777766665443
No 453
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.55 E-value=2.3e+02 Score=26.96 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=36.6
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHH--HHHHHHHHhc--cccchHHHHHHHHHHHHh
Q 048766 241 GYVNRNRVPEALHLFGEMQSKDVPMDEY--TFSTMLSGIA--GLSALTWGMLIHSCVIKQ 296 (525)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 296 (525)
.+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++.+|...++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445778899999999988876 555554 3444444444 345677788887776654
No 454
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=50.47 E-value=2.4e+02 Score=27.15 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=27.4
Q ss_pred CCCCch--hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 433 GFGSYG--VVWRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 433 ~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
+..|.+ .++...+..+.+.+++..|-.+.++++++.|..
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 444553 345666778889999999999999999999843
No 455
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=50.31 E-value=1.1e+02 Score=23.40 Aligned_cols=40 Identities=13% Similarity=0.078 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhc--CCChhHHHHHHHHHhhccChhHHHHHHH
Q 048766 457 ARISAAEVIKLE--GDSDYVYVMLCNLYTSHGNWDVASVMRN 496 (525)
Q Consensus 457 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (525)
..++|..+.+.+ -..+..|...+..+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566777777654 4455667788888888999999988875
No 456
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.28 E-value=32 Score=35.60 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=27.0
Q ss_pred hccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 417 GQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
..+|+.+.|++...+++ +...|..|+.....+|+.+-|+.+|++...
T Consensus 654 Le~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred hhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 34566666665555543 455666666666666666666666655544
No 457
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.21 E-value=3.4e+02 Score=28.77 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=31.3
Q ss_pred HHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 048766 44 LMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96 (525)
Q Consensus 44 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 96 (525)
+=..|...|++++|++.-+.-++.-...+-.-...+.+.+++..|.+++.++.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 33456677888888876655422101112222345667778888888887774
No 458
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.02 E-value=30 Score=22.51 Aligned_cols=28 Identities=25% Similarity=0.186 Sum_probs=14.2
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
|....-.++.+|...|++++|.+.++++
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3333344555555666666666555543
No 459
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=49.66 E-value=2e+02 Score=27.31 Aligned_cols=96 Identities=10% Similarity=-0.027 Sum_probs=66.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh------C--CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc--CC--ChhHHH
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL------G--FGSYGVVWRALLSASGACSDLDVARISAAEVIKLE--GD--SDYVYV 476 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~------~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~--~~~~~~ 476 (525)
|..+-..|...|+...-..++... + ........+.++..|...+.++.|.....+..-.+ .+ -...+.
T Consensus 172 ~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~y 251 (493)
T KOG2581|consen 172 YFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLY 251 (493)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHH
Confidence 444445566677766666665543 2 11224566788899999999999998887765322 11 233456
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 477 MLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
.++.+..-+++|..|.+.+-....+.+.
T Consensus 252 Y~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 252 YLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 7889999999999999999888776553
No 460
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.66 E-value=99 Score=27.21 Aligned_cols=55 Identities=11% Similarity=-0.175 Sum_probs=33.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcC------CChhHHHHHHHHHhhccChhHHHHHHHH
Q 048766 443 ALLSASGACSDLDVARISAAEVIKLEG------DSDYVYVMLCNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 443 ~l~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (525)
.++.-|...|++++|.++|+.+....- -...+...+..++.+.|+.++...+-=+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455666677777777777777754321 1234455666667777777776665433
No 461
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.64 E-value=1.9e+02 Score=25.84 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=23.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH
Q 048766 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270 (525)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 270 (525)
+.+-..+.+++++|...+.++...|+..+..+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 344556677888888888888888877766554
No 462
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=49.38 E-value=90 Score=28.57 Aligned_cols=85 Identities=14% Similarity=0.064 Sum_probs=52.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc---CCCCCHhhHHH--HHHHHcccCChHHHHHHHHHHHH-----cccCCCcc-hhh
Q 048766 75 LISGYVQSGKYRKALNLFVELERS---EIYADAYSFTS--ALAACGQLGSLQLGMAIHSKIVK-----YSLERGVV-IAN 143 (525)
Q Consensus 75 ll~~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~-~~~ 143 (525)
++...-+-++.++|++.++++.+. .-.|++..|.. ..+++...|+..++++++++..+ .|+++++. .|.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 344444556888898888888753 12455555543 34556677899999998888877 56666443 344
Q ss_pred HHH-HHHHhcCCHHHHH
Q 048766 144 CLI-DMYGKCGSVEDAI 159 (525)
Q Consensus 144 ~l~-~~~~~~g~~~~a~ 159 (525)
.+- ..|-..|++...-
T Consensus 161 ~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASYY 177 (380)
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 444 3444557766543
No 463
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=49.03 E-value=1.1e+02 Score=33.56 Aligned_cols=122 Identities=17% Similarity=0.091 Sum_probs=82.7
Q ss_pred HHcCCCCCcchHHH------HHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--------CC-CCc-hhHH
Q 048766 378 ACSHTDIPFDKVSE------YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--------GF-GSY-GVVW 441 (525)
Q Consensus 378 ~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~-~~~-~~~~ 441 (525)
.....|. +.++.+ ++...... -.++....|..+...+.+.|+.++|+..-.+. +. .|+ ...+
T Consensus 941 ~~~~e~~-~~~~~~~~~slnl~~~v~~~-~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 941 EALLEDG-FSEAYELPESLNLLNNVMGV-LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhcccc-hhhhhhhhhhhhHHHHhhhh-cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 3444455 666666 55533321 11334677888999999999999999987764 22 222 3455
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhc-----CCCh---hHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLE-----GDSD---YVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
..+...+...+....|...+.+++++. |++| .....+..++...++.+.|.++++.+.+.
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 566666677778999999998888743 4333 34556777777779999999999988763
No 464
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=48.79 E-value=1.7e+02 Score=26.82 Aligned_cols=116 Identities=14% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh----CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 048766 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
+++.+.++..++.|...++.+... +..+.++--+..+.. |...-...+.....-|++.||.+.|.+.+.+..+.
T Consensus 56 ~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~k 133 (393)
T KOG0687|consen 56 LYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEK 133 (393)
T ss_pred HHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q ss_pred c------CCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCccCCcc
Q 048766 468 E------GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGC 509 (525)
Q Consensus 468 ~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 509 (525)
. -|-......++-.|....-+.+-++..+.+.+.|-..+..+
T Consensus 134 tvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrN 181 (393)
T KOG0687|consen 134 TVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRN 181 (393)
T ss_pred HhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhh
No 465
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=48.57 E-value=2.1e+02 Score=25.96 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=22.8
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHH
Q 048766 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294 (525)
Q Consensus 253 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 294 (525)
++++.+...++.|.-..+..+.-.+.+.=.+..+..+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 455555555566665555555544555445555555555554
No 466
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.55 E-value=24 Score=27.22 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=25.1
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 048766 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276 (525)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 276 (525)
....|.-..|..+|++|++.|-+||. |..|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34557778899999999999999884 5555543
No 467
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.49 E-value=36 Score=30.50 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 048766 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271 (525)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 271 (525)
|+.-|....+.|++++|+.++++..+.|+.--..+|.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 6678888888888888888888888888665555543
No 468
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=47.67 E-value=4.1e+02 Score=29.04 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=10.5
Q ss_pred HHHHHhcCChHHHHHHHhc
Q 048766 208 INGIAQFGDIEDAIMILSS 226 (525)
Q Consensus 208 ~~~~~~~~~~~~a~~~~~~ 226 (525)
+.-+...+++.+|..+.++
T Consensus 701 ir~~Ld~~~Y~~Af~~~Rk 719 (928)
T PF04762_consen 701 IRKLLDAKDYKEAFELCRK 719 (928)
T ss_pred HHHHHhhccHHHHHHHHHH
Confidence 3444555666666665554
No 469
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=45.54 E-value=1.1e+02 Score=21.63 Aligned_cols=42 Identities=14% Similarity=0.047 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCC
Q 048766 24 QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65 (525)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 65 (525)
++|+.....|+.-|+.+|..+++.+.-.=-++...+++..+.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677877888888888888888887766666666666666554
No 470
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=44.53 E-value=2.6e+02 Score=25.84 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=56.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-------CCCCchhHHHHHHHHHhc-CCChHHHHHHHHHHHhhc-CCCh-----hHH
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-------GFGSYGVVWRALLSASGA-CSDLDVARISAAEVIKLE-GDSD-----YVY 475 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~-p~~~-----~~~ 475 (525)
..+.+.|.+.|+.++-..++... +..........++..+.. .+.++.-+.+..+.++-. .++. ..-
T Consensus 52 lel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Le 131 (411)
T KOG1463|consen 52 LELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLE 131 (411)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44556666666666655555443 222223444555555544 233445555555555422 1111 122
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHcCCccCCcccEEEe
Q 048766 476 VMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514 (525)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 514 (525)
..|+.+|...++|.+|+.+...+...-.+-+.....+++
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev 170 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEV 170 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeee
Confidence 367888999999999998887776543333443443433
No 471
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=44.53 E-value=2.5e+02 Score=25.72 Aligned_cols=154 Identities=13% Similarity=0.023 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHhhCCCC---CCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHH
Q 048766 349 LTKVIELFEQLKTVRDL---QPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425 (525)
Q Consensus 349 ~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 425 (525)
.+.|.+.|+.....+.. ..++.....++....+.|+ .+.-..+++.... .+++.....++.+++...+.+..
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~-~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~~ 220 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGD-EEEWDFLWELYKN----STSPEEKRRLLSALACSPDPELL 220 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhh-HhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHHH
Confidence 46777888887774312 2244445566666677776 4444444444332 45666677788888888888877
Q ss_pred HHHHHHh-CC--CCchhHHHHHHHHHhcCCC--hHHHHHHHHH----HHhhcCCChhHHHHHHHHHhhccChhHHHHHHH
Q 048766 426 QRMIREL-GF--GSYGVVWRALLSASGACSD--LDVARISAAE----VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496 (525)
Q Consensus 426 ~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~----~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (525)
.++++.. .. -+... ...++.++...+. .+.+.+.+.. +.+.-+.+......++..+...-.-++-.+-++
T Consensus 221 ~~~l~~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 299 (324)
T PF11838_consen 221 KRLLDLLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELE 299 (324)
T ss_dssp HHHHHHHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHH
T ss_pred HHHHHHHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHH
Confidence 7777776 21 12222 3344444442333 3666665554 334446555555666666666666777777788
Q ss_pred HHHHcCCccCCc
Q 048766 497 FMRERGLRKEAG 508 (525)
Q Consensus 497 ~~~~~~~~~~~~ 508 (525)
++.+....+.|+
T Consensus 300 ~f~~~~~~~~~~ 311 (324)
T PF11838_consen 300 EFFEDKPKPPPG 311 (324)
T ss_dssp HHHHHHCTCCCT
T ss_pred HHHhhCcCCChH
Confidence 887555444444
No 472
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=44.41 E-value=1.2e+02 Score=29.68 Aligned_cols=54 Identities=4% Similarity=0.044 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHH
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (525)
...|-.++.-|...++ +++|.++.+-.. ....|.+++.+-.+..+..-++..+.
T Consensus 573 V~py~~iL~e~~sssK-WeqavRLCrfv~-------eqTMWAtlAa~Av~~~~m~~~EiAYa 626 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSK-WEQAVRLCRFVQ-------EQTMWATLAAVAVRKHQMQISEIAYA 626 (737)
T ss_pred ccccHHHHHHHhccch-HHHHHHHHHhcc-------chHHHHHHHHHHHhhccccHHHHHHH
Confidence 3344455555555555 666666554333 22345555555555444444443333
No 473
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=44.19 E-value=2.3e+02 Score=25.16 Aligned_cols=153 Identities=12% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcc--CCCHhHHHHHHHHHHhcCCh-----hHHHHHHHHHhhCCCCCCCHhHHHHHHH
Q 048766 305 ASALLDMYSKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDL-----TKVIELFEQLKTVRDLQPDSVTFLNVLA 377 (525)
Q Consensus 305 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 377 (525)
...++..+.+.+....|..+.+... +.-..+...++......... ......+....+ .-.....|..++-
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~l~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~---ll~~f~~~l~Ivv 161 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRSLPYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVIS---LLQEFPEYLEIVV 161 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhccCCCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHH---HHHcCcchHHHHH
Q ss_pred HHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh----CCCC-----chhHHHHHHHHH
Q 048766 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL----GFGS-----YGVVWRALLSAS 448 (525)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-----~~~~~~~l~~~~ 448 (525)
.|.+.-+ ...=..+|..+ | +|. .|...+.+.|+.+.|..++--+ +... +......++...
T Consensus 162 ~C~RKtE-~~~W~~LF~~l----g-~P~-----dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a 230 (258)
T PF07064_consen 162 NCARKTE-VRYWPYLFDYL----G-SPR-----DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMA 230 (258)
T ss_pred HHHHhhH-HHHHHHHHHhc----C-CHH-----HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHH
Q ss_pred hcCCChHHHHHHHHHHHhhcCCC
Q 048766 449 GACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 449 ~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
...++++-+.++.+=+..++|++
T Consensus 231 ~~~~~w~Lc~eL~RFL~~ld~~~ 253 (258)
T PF07064_consen 231 LESGDWDLCFELVRFLKALDPEG 253 (258)
T ss_pred HhcccHHHHHHHHHHHHHhCccc
No 474
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=44.06 E-value=61 Score=18.63 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.+|..|+.+-...+++++|..=|.+..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677788888888888888877776654
No 475
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.75 E-value=1.2e+02 Score=21.94 Aligned_cols=34 Identities=12% Similarity=-0.167 Sum_probs=20.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 443 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
.|.-.|...|+.+.|.+-|+.=..+.|++.....
T Consensus 77 hLGlLys~~G~~e~a~~eFetEKalFPES~~fmD 110 (121)
T COG4259 77 HLGLLYSNSGKDEQAVREFETEKALFPESGVFMD 110 (121)
T ss_pred HHHHHHhhcCChHHHHHHHHHhhhhCccchhHHH
Confidence 3445566667777777777666666665444333
No 476
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=43.33 E-value=2.7e+02 Score=25.72 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=48.3
Q ss_pred CchHHHHHHHHHHHHcCCC------------HHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 048766 299 DASIVVASALLDMYSKCGQ------------VEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363 (525)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 363 (525)
|.|+.++-.++..--..-. .+.-..++++.. +.+...+..++..+.+..+.+...+-++++..
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~-- 93 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF-- 93 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Confidence 4566666666654322211 223344444443 22334555566666666666666777777766
Q ss_pred CCCC-CHhHHHHHHHHHcC---CCCCcchHHHHHHHhhh
Q 048766 364 DLQP-DSVTFLNVLAACSH---TDIPFDKVSEYFESMTK 398 (525)
Q Consensus 364 ~~~p-~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~ 398 (525)
..| +...|...+..... .-. ++....+|.+..+
T Consensus 94 -~~~~~~~LW~~yL~~~q~~~~~f~-v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 94 -KNPGSPELWREYLDFRQSNFASFT-VSDVRDVYEKCLR 130 (321)
T ss_pred -HCCCChHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHH
Confidence 334 34444444444332 222 5566666555443
No 477
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.25 E-value=2.4e+02 Score=25.05 Aligned_cols=50 Identities=4% Similarity=-0.037 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 456 VARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 456 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
.-+++.+.++..+..|..+|..--+++..-++|+.=+.+-.+|.+..+..
T Consensus 131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N 180 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN 180 (318)
T ss_pred chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc
Confidence 44444555555444455555555555555555555555555555544443
No 478
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=43.13 E-value=2.8e+02 Score=25.76 Aligned_cols=133 Identities=9% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHH
Q 048766 207 VINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286 (525)
Q Consensus 207 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 286 (525)
+.+.+++.++-+.+..+-+.+..-......++..++-...-.+...+.+.+..+.. ||......++++.+........
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~~~~~~~ 249 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSAPASDLV 249 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCchhHH
Q ss_pred HHHHHHHHHhCCCchHHHHHHH-HHHHHcCCCHHHHHHHHHhccCCC-HhHHHHHHH
Q 048766 287 MLIHSCVIKQGLDASIVVASAL-LDMYSKCGQVEIADSMFRSLCRKN-LVTWNAMIT 341 (525)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~ 341 (525)
...+..+.+.....+..+...+ .++..-..+.+.+..+++.+-..+ ...|+.+..
T Consensus 250 ~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfa 306 (340)
T PF12069_consen 250 AILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFA 306 (340)
T ss_pred HHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHH
No 479
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.43 E-value=1.6e+02 Score=24.13 Aligned_cols=59 Identities=5% Similarity=-0.059 Sum_probs=36.9
Q ss_pred HHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCC
Q 048766 95 LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154 (525)
Q Consensus 95 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 154 (525)
++..|++++..-. .++..+...++.-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 4556766665544 3444444456667788888888887766666555555566666664
No 480
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.83 E-value=3.2e+02 Score=26.04 Aligned_cols=58 Identities=9% Similarity=0.097 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCC------CCcccHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 203 SYNEVINGIAQFGDIEDAIMILSSMPS------PNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260 (525)
Q Consensus 203 ~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 260 (525)
.+..+..-|..+|+++.|.+.|.+..+ ..+..|-.+|..-.-.|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 456677777788888888888877542 3334566666666777778777777776655
No 481
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=41.63 E-value=1.7e+02 Score=28.03 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC-----------CCCcccHHHHHHHHHhcCChhHHHHHHHHHh
Q 048766 204 YNEVINGIAQFGDIEDAIMILSSMP-----------SPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259 (525)
Q Consensus 204 ~~~l~~~~~~~~~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 259 (525)
...|++.++-.||+..|.++++.+. .-.+.++--+.-+|.-.+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888999999999988775 1234466777788888899999999888765
No 482
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.58 E-value=70 Score=29.03 Aligned_cols=29 Identities=7% Similarity=-0.011 Sum_probs=20.8
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHHH
Q 048766 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431 (525)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (525)
..|+..|..+..+|.-.|+...+.+-+..
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45777888888888888877766654443
No 483
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=41.55 E-value=3.3e+02 Score=26.24 Aligned_cols=31 Identities=6% Similarity=-0.033 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhccCCCHh
Q 048766 304 VASALLDMYSKCGQVEIADSMFRSLCRKNLV 334 (525)
Q Consensus 304 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 334 (525)
+-...+.++...+..+....+...+...++.
T Consensus 102 vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~ 132 (410)
T TIGR02270 102 LCAGIQAALGWLGGRQAEPWLEPLLAASEPP 132 (410)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHhcCCChH
Confidence 3444444444444444444444444333333
No 484
>PRK09462 fur ferric uptake regulator; Provisional
Probab=40.73 E-value=1.4e+02 Score=23.62 Aligned_cols=60 Identities=8% Similarity=0.165 Sum_probs=34.4
Q ss_pred HHHhcCCCCCHhhHHHHHHHHccc-CChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCC
Q 048766 94 ELERSEIYADAYSFTSALAACGQL-GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154 (525)
Q Consensus 94 ~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 154 (525)
.+.+.|++++..-.. ++..+... +..-.|.++++.+.+.+...+..|..--++.+...|-
T Consensus 7 ~l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 345566666554333 33444433 4566788888888777755555554445555655553
No 485
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.54 E-value=4.5e+02 Score=27.42 Aligned_cols=194 Identities=12% Similarity=0.116 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhCCCch---HHHHHHHHHHHHcCCCHHHHHHHHHhccC-CCHh----------HHHHHHHHHHhcCChh
Q 048766 285 WGMLIHSCVIKQGLDAS---IVVASALLDMYSKCGQVEIADSMFRSLCR-KNLV----------TWNAMITGYARNGDLT 350 (525)
Q Consensus 285 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----------~~~~l~~~~~~~~~~~ 350 (525)
+-..++.+|.+.--.|+ ..+...++-.|....+++...++.+.+.. ||.. .|.-.+.---+-||-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 33445666655433333 34555566667777778877777777652 2211 1211122223456777
Q ss_pred HHHHHHHHHhh-CCCCCCCHhH-----HHHH--HHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCCh
Q 048766 351 KVIELFEQLKT-VRDLQPDSVT-----FLNV--LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422 (525)
Q Consensus 351 ~a~~~~~~~~~-~~~~~p~~~~-----~~~l--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 422 (525)
+|+.+.-.+.+ +|.+.||..+ |.-+ -..|...+. .+.|.+.|++.. .+.|+...--.+.-.+...|..
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s-~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAES-LNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEH 336 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhh-HHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhh
Confidence 77776655543 4556677543 2221 123444555 677777777665 5567655444444444444432
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 423 WRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 423 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
-+--.-++.++ ..|-..+.+.|..+.-.++++-+.- ..+-.-++++.+|.+.-+.|.+..
T Consensus 337 Fens~Elq~Ig--------mkLn~LlgrKG~leklq~YWdV~~y------------~~asVLAnd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 337 FENSLELQQIG--------MKLNSLLGRKGALEKLQEYWDVATY------------FEASVLANDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred ccchHHHHHHH--------HHHHHHhhccchHHHHHHHHhHHHh------------hhhhhhccCHHHHHHHHHHHhccC
Confidence 22111122211 1233344566666665555543322 223334566667776666665543
No 486
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=40.24 E-value=2.5e+02 Score=24.44 Aligned_cols=54 Identities=7% Similarity=0.279 Sum_probs=33.1
Q ss_pred HHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHH
Q 048766 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379 (525)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 379 (525)
.+|+-.-+|.+.....++..+. .+++++|.+++.++.+.| ..|... .+.+.+.+
T Consensus 229 nVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lg-ysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 229 NVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLG-YSPEDI-ITTLFRVV 282 (333)
T ss_pred hhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcC-CCHHHH-HHHHHHHH
Confidence 3444444566666666666544 457888888888888877 666432 23444444
No 487
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=39.80 E-value=4e+02 Score=26.66 Aligned_cols=28 Identities=14% Similarity=-0.084 Sum_probs=19.8
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
.+.-|..++..|.|.+++.+|+..+-+.
T Consensus 317 HvYPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 317 HVYPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp -SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 4555677778888888888888887764
No 488
>PRK14700 recombination factor protein RarA; Provisional
Probab=39.75 E-value=2.9e+02 Score=25.08 Aligned_cols=51 Identities=8% Similarity=0.057 Sum_probs=38.5
Q ss_pred cccHHHHHHHHHh---cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccc
Q 048766 232 SSSWNSILTGYVN---RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282 (525)
Q Consensus 232 ~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 282 (525)
...+..+++++.+ -.+++.|+-++-.|++.|-.|....-..++.+....|.
T Consensus 123 gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 123 GKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred cchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3344455666654 57899999999999999988888888888877776663
No 489
>PRK09857 putative transposase; Provisional
Probab=39.46 E-value=3e+02 Score=25.06 Aligned_cols=63 Identities=13% Similarity=0.024 Sum_probs=47.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 443 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
.++.-....++.++-.++++.+.+..|.......+++.-+.+.|.-++++++..+|...|+..
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 344333456777777777777777667666777788888988898888999999999888764
No 490
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.43 E-value=3.4e+02 Score=25.80 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHhcCCC------CCcchHHHHHHHHHhcCChHHHHHHHhcC
Q 048766 171 ISWNSVIAASARNGNLELAFGFLHRLPN------PDTISYNEVINGIAQFGDIEDAIMILSSM 227 (525)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 227 (525)
..+..+...|...|+++.|++.|.+..+ .....+..++..-.-.|+|........+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 3567788888899999999999988622 22334555566666677776666555444
No 491
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=39.32 E-value=1.6e+02 Score=22.76 Aligned_cols=42 Identities=12% Similarity=-0.047 Sum_probs=30.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 444 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
+-..+...-+.+.|..+|+++++..|++..+...++..+...
T Consensus 82 fq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS~ 123 (139)
T PF12583_consen 82 FQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDSP 123 (139)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCcH
Confidence 333444556779999999999999999999888888877554
No 492
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.88 E-value=1.8e+02 Score=22.35 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcccCCC-cchhhHHHHHHHhcCCHHHHHHHHh
Q 048766 122 LGMAIHSKIVKYSLERG-VVIANCLIDMYGKCGSVEDAIGVFG 163 (525)
Q Consensus 122 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 163 (525)
.+.++|..|...|+... ...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555554333 2344555555555566666655554
No 493
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.80 E-value=4.2e+02 Score=26.60 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhcc-------CC-----------------CHhHHHHH---HHHHHhcCChhHHH
Q 048766 301 SIVVASALLDMYSKCGQVEIADSMFRSLC-------RK-----------------NLVTWNAM---ITGYARNGDLTKVI 353 (525)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~-----------------~~~~~~~l---~~~~~~~~~~~~a~ 353 (525)
.+.....+..++...|+.+.|..++++.. .| |-..|-++ |..+.+.|-+..|.
T Consensus 283 HvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~ 362 (665)
T KOG2422|consen 283 HVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTAL 362 (665)
T ss_pred chhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHH
Confidence 44455556677778888777766655442 11 22223332 45566778888888
Q ss_pred HHHHHHhhCCCCCC--CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhC--CCCChhHHHHHHHHHhccCC---hHHHH
Q 048766 354 ELFEQLKTVRDLQP--DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG--IKPTVEHCCSMIRLMGQKGE---VWRAQ 426 (525)
Q Consensus 354 ~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~---~~~A~ 426 (525)
++.+-+.. +.| |+.....+|..|+-..+++.=.+++++....... .-|+-..-..++..|.+... ...|.
T Consensus 363 E~cKllls---Ldp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~ 439 (665)
T KOG2422|consen 363 EWCKLLLS---LDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSAL 439 (665)
T ss_pred HHHHHHhh---cCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHH
Confidence 88887777 555 4555556666665444337777777766643222 23443333445555555444 34455
Q ss_pred HHHHHh
Q 048766 427 RMIREL 432 (525)
Q Consensus 427 ~~~~~~ 432 (525)
..+.++
T Consensus 440 ~~l~qA 445 (665)
T KOG2422|consen 440 NALLQA 445 (665)
T ss_pred HHHHHH
Confidence 555443
No 494
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.76 E-value=4e+02 Score=26.34 Aligned_cols=127 Identities=5% Similarity=-0.030 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 048766 187 ELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266 (525)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 266 (525)
++|+..+-+....|.......+..+.....-.--.+..+.+..........-+.-..+.++++.|+.++..|...|..|.
T Consensus 198 ~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~ 277 (472)
T PRK14962 198 REALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYE 277 (472)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHH
Q ss_pred HHHHHHHHHHhccccchH------HHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 048766 267 EYTFSTMLSGIAGLSALT------WGMLIHSCVIKQGLDASIVVASALLDMYS 313 (525)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (525)
...-..+..++...|.-+ .+...++...+.|.+........++....
T Consensus 278 ~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~~~l~~~~~~~~ 330 (472)
T PRK14962 278 VLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEKRLVCKLGSASI 330 (472)
T ss_pred HHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHH
No 495
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=38.75 E-value=3.9e+02 Score=26.27 Aligned_cols=242 Identities=10% Similarity=0.045 Sum_probs=135.0
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHhcccc------chHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCCHH-
Q 048766 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS------ALTWGMLIHSCVIKQG--LDASIVVASALLDMYSKCGQVE- 319 (525)
Q Consensus 249 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~- 319 (525)
+....+|++.... .|+...+...|..|...- .+.....+++.....+ .+.....|..+.-.+.......
T Consensus 299 s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence 4455677776653 456666666666554322 3333444454444332 1334555666666666655443
Q ss_pred HHHHHHHhccCCCHhHHHHHHHHHHhc-CChhHH-HHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchH--HHHHHH
Q 048766 320 IADSMFRSLCRKNLVTWNAMITGYARN-GDLTKV-IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV--SEYFES 395 (525)
Q Consensus 320 ~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a--~~~~~~ 395 (525)
.|..+..+....+...|-.-+...... .+.+-- .+++......- ..+-...++... .++..... ..++..
T Consensus 377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~-~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a 450 (568)
T KOG2396|consen 377 VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQV-CSELLISWASAS-----EGDSLQEDTLDLIISA 450 (568)
T ss_pred HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh-cchhHHHHHHHh-----hccchhHHHHHHHHHH
Confidence 445555455566666666655555432 222222 22233333311 122222333322 11101111 122222
Q ss_pred hhhhhCCCCChh-HHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHH--hcCCChHHHHHHHHHHHhhcCC
Q 048766 396 MTKDYGIKPTVE-HCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSAS--GACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 396 ~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
... -..|+.. .-+.+.+-+.+.|-..+|...+..+ --+|+...+..++..- ...-+..-+..+|+.++.....
T Consensus 451 ~~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~ 528 (568)
T KOG2396|consen 451 LLS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGA 528 (568)
T ss_pred HHH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCC
Confidence 222 2234433 3466788888999999999999987 2244555666665432 2233488889999999987667
Q ss_pred ChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
++..|......-...|.-+.+-.++.+..+
T Consensus 529 d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 529 DSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 899999888888899999999888776654
No 496
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=38.36 E-value=67 Score=23.83 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=26.0
Q ss_pred cCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccC
Q 048766 450 ACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 450 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 487 (525)
..||+..|++.+.++.+..+..+..|..-+.+-..+||
T Consensus 71 ~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 71 AEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 46888888888888877766555556555565555554
No 497
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=38.30 E-value=2.7e+02 Score=24.26 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=50.8
Q ss_pred CCCCChhHHHHHHHHHhccCChHHHHHHHHHh---------------CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL---------------GFGSYGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
+++-+......++ +...||..+|+..++.- -..|.+.....++..|.. +++++|.+.+.+++
T Consensus 189 kv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw 265 (333)
T KOG0991|consen 189 KVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELW 265 (333)
T ss_pred CCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 4554444444433 33567777776666542 135677777777776654 68899999999998
Q ss_pred hhcCCChhHHHHHHHHHhhc
Q 048766 466 KLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 466 ~~~p~~~~~~~~l~~~~~~~ 485 (525)
+++-+.......+.++.-..
T Consensus 266 ~lgysp~Dii~~~FRv~K~~ 285 (333)
T KOG0991|consen 266 KLGYSPEDIITTLFRVVKNM 285 (333)
T ss_pred HcCCCHHHHHHHHHHHHHhc
Confidence 88864445555555554433
No 498
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=38.26 E-value=1.8e+02 Score=22.16 Aligned_cols=62 Identities=10% Similarity=-0.018 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHH-------h-CCC-CchhHHHHH----HHHHhcCCChHHHHHHHHHHHhh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIRE-------L-GFG-SYGVVWRAL----LSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~-------~-~~~-~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
...+..|..++...|++++++.--+. - ... .....|... ..++...|+.++|+..|+.+-++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 34456667777778887765554433 2 222 234455443 34566789999999999877653
No 499
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.24 E-value=2.1e+02 Score=24.68 Aligned_cols=92 Identities=15% Similarity=0.126 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcc---C--CCHhHHH--HHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHH
Q 048766 302 IVVASALLDMYSKCGQVEIADSMFRSLC---R--KNLVTWN--AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374 (525)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~--~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 374 (525)
..-++.|+--|.-...+.+|.+.|..-. + .+..+++ .-|......|+.+.|++....+...- +..|...+-.
T Consensus 26 ~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pei-Ld~n~~l~F~ 104 (228)
T KOG2659|consen 26 REDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEI-LDTNRELFFH 104 (228)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHH-HccchhHHHH
Confidence 3334444444444444444444444332 2 2333333 34566788899999998888876543 4444323322
Q ss_pred HHH----HHcCCCCCcchHHHHHHH
Q 048766 375 VLA----ACSHTDIPFDKVSEYFES 395 (525)
Q Consensus 375 l~~----~~~~~~~~~~~a~~~~~~ 395 (525)
+.. -..+.|. .++|+++.+.
T Consensus 105 Lq~q~lIEliR~~~-~eeal~F~q~ 128 (228)
T KOG2659|consen 105 LQQLHLIELIREGK-TEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHhhh-HHHHHHHHHH
Confidence 222 1334555 6666666654
No 500
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=38.07 E-value=1.7e+02 Score=29.75 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=21.9
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCCC------CcccHHHHHHHHHhcCCh
Q 048766 43 ALMGFYRKINSLADAHKMFVEIPQP------SVVSWNSLISGYVQSGKY 85 (525)
Q Consensus 43 ~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~ll~~~~~~~~~ 85 (525)
+|+.+|...|++-.+.++++.+... =...||..|+.+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 4555555555555555555554431 112355555555555543
Done!