Query 048766
Match_columns 525
No_of_seqs 583 out of 2641
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 22:45:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048766.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048766hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.6E-41 5.6E-46 342.1 39.9 446 48-504 63-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.3E-41 1.1E-45 339.8 37.3 475 2-484 83-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 9.3E-29 3.2E-33 234.9 39.0 371 76-487 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 8E-28 2.7E-32 228.4 37.2 352 113-502 8-369 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.3E-27 4.5E-32 230.4 20.8 186 71-314 28-222 (501)
6 2gw1_A Mitochondrial precursor 100.0 2.6E-25 8.9E-30 219.5 34.5 264 233-504 187-481 (514)
7 3fp2_A TPR repeat-containing p 100.0 2E-25 6.8E-30 221.7 33.5 423 38-473 25-497 (537)
8 4g26_A Pentatricopeptide repea 99.9 7.2E-27 2.5E-31 225.3 20.4 184 233-419 27-223 (501)
9 2gw1_A Mitochondrial precursor 99.9 7.3E-25 2.5E-29 216.3 31.8 443 5-479 8-490 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 1.1E-23 3.6E-28 204.3 31.6 331 137-505 24-414 (450)
11 3fp2_A TPR repeat-containing p 99.9 1.7E-23 5.7E-28 207.8 33.4 424 69-504 25-494 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 1E-22 3.4E-27 197.4 36.0 364 69-492 26-445 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 7.6E-21 2.6E-25 178.1 29.5 301 175-485 8-353 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1.8E-20 6.3E-25 175.5 31.3 295 201-503 3-337 (359)
15 2xm6_A Protein corresponding t 99.9 1.3E-18 4.4E-23 170.1 36.6 351 117-485 56-453 (490)
16 3hym_B Cell division cycle pro 99.9 1.8E-19 6.3E-24 166.6 28.0 283 201-489 22-322 (330)
17 1fch_A Peroxisomal targeting s 99.9 5.6E-20 1.9E-24 173.0 24.3 278 214-499 38-357 (368)
18 2ooe_A Cleavage stimulation fa 99.9 4.5E-18 1.5E-22 167.9 38.2 406 68-503 12-494 (530)
19 3hym_B Cell division cycle pro 99.9 2E-19 6.7E-24 166.4 26.7 266 230-503 20-301 (330)
20 1xi4_A Clathrin heavy chain; a 99.9 4.5E-17 1.5E-21 166.7 44.9 400 7-452 989-1415(1630)
21 1xi4_A Clathrin heavy chain; a 99.9 3.9E-17 1.3E-21 167.1 43.6 447 7-496 843-1340(1630)
22 2xm6_A Protein corresponding t 99.8 9.5E-18 3.2E-22 163.9 36.4 360 124-503 27-434 (490)
23 1b89_A Protein (clathrin heavy 99.8 3.5E-18 1.2E-22 157.0 28.6 282 50-357 15-306 (449)
24 4g1t_A Interferon-induced prot 99.8 2.6E-18 8.9E-23 167.4 28.9 367 104-512 51-470 (472)
25 2ooe_A Cleavage stimulation fa 99.8 4.5E-17 1.5E-21 160.8 37.1 416 26-470 2-495 (530)
26 1b89_A Protein (clathrin heavy 99.8 1E-18 3.4E-23 160.6 22.5 285 116-432 15-308 (449)
27 3mkr_A Coatomer subunit epsilo 99.8 1.1E-17 3.8E-22 150.7 27.3 269 211-495 9-288 (291)
28 4eqf_A PEX5-related protein; a 99.8 8.1E-19 2.8E-23 164.8 20.7 262 231-497 64-352 (365)
29 3cv0_A Peroxisome targeting si 99.8 2E-18 6.9E-23 159.4 21.4 263 231-500 20-314 (327)
30 1fch_A Peroxisomal targeting s 99.8 1.9E-18 6.4E-23 162.6 20.5 277 215-503 15-316 (368)
31 3mkr_A Coatomer subunit epsilo 99.8 8.5E-18 2.9E-22 151.5 23.1 249 239-504 6-267 (291)
32 4eqf_A PEX5-related protein; a 99.8 6.9E-18 2.4E-22 158.5 22.4 233 266-503 64-312 (365)
33 4g1t_A Interferon-induced prot 99.8 8.5E-17 2.9E-21 156.7 26.9 380 67-479 49-471 (472)
34 2pl2_A Hypothetical conserved 99.7 1E-16 3.4E-21 138.0 17.7 193 299-498 2-211 (217)
35 3cv0_A Peroxisome targeting si 99.7 3.8E-16 1.3E-20 144.0 22.6 230 268-504 22-272 (327)
36 3uq3_A Heat shock protein STI1 99.7 3E-16 1E-20 139.3 21.0 216 271-502 9-237 (258)
37 3u4t_A TPR repeat-containing p 99.7 8.4E-16 2.9E-20 137.7 22.4 246 234-487 5-270 (272)
38 3e4b_A ALGK; tetratricopeptide 99.7 1.5E-15 5E-20 146.1 23.9 257 231-501 140-421 (452)
39 3uq3_A Heat shock protein STI1 99.7 5.4E-16 1.8E-20 137.7 19.3 234 233-481 6-256 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.7 1E-15 3.5E-20 137.3 21.0 241 244-495 17-269 (275)
41 3e4b_A ALGK; tetratricopeptide 99.7 3E-15 1E-19 143.9 22.1 373 9-432 9-418 (452)
42 3spa_A Mtrpol, DNA-directed RN 99.7 2.5E-17 8.6E-22 163.5 5.6 125 37-161 126-258 (1134)
43 2vq2_A PILW, putative fimbrial 99.7 3.6E-14 1.2E-18 122.9 23.5 201 299-503 5-213 (225)
44 2h6f_A Protein farnesyltransfe 99.7 2E-14 6.7E-19 133.8 23.0 244 233-485 98-366 (382)
45 1ouv_A Conserved hypothetical 99.6 1.1E-13 3.7E-18 124.0 26.4 189 304-503 40-253 (273)
46 2ho1_A Type 4 fimbrial biogene 99.6 2.6E-14 8.7E-19 126.4 22.0 198 302-503 37-240 (252)
47 2h6f_A Protein farnesyltransfe 99.6 2.6E-14 8.8E-19 133.0 22.8 227 267-502 97-349 (382)
48 2q7f_A YRRB protein; TPR, prot 99.6 5.2E-15 1.8E-19 130.0 17.2 170 307-481 62-236 (243)
49 2q7f_A YRRB protein; TPR, prot 99.6 8.3E-15 2.8E-19 128.7 17.1 200 300-504 21-225 (243)
50 3vtx_A MAMA; tetratricopeptide 99.6 2E-14 6.8E-19 120.3 18.6 166 332-503 4-172 (184)
51 2ho1_A Type 4 fimbrial biogene 99.6 1.2E-13 4.2E-18 122.0 24.3 202 271-477 41-248 (252)
52 3u4t_A TPR repeat-containing p 99.6 3.1E-14 1.1E-18 127.4 20.6 229 268-504 4-253 (272)
53 2pl2_A Hypothetical conserved 99.6 1.8E-14 6.2E-19 123.9 17.5 182 276-465 14-212 (217)
54 4abn_A Tetratricopeptide repea 99.6 1.1E-14 3.9E-19 140.8 17.7 207 283-497 84-317 (474)
55 3spa_A Mtrpol, DNA-directed RN 99.6 3.6E-16 1.2E-20 155.3 6.6 146 202-347 128-286 (1134)
56 1ouv_A Conserved hypothetical 99.6 3.4E-13 1.2E-17 120.7 25.5 225 231-471 5-255 (273)
57 4e6h_A MRNA 3'-END-processing 99.6 1.6E-11 5.4E-16 122.0 39.1 429 19-472 48-575 (679)
58 2vq2_A PILW, putative fimbrial 99.6 2.1E-13 7.2E-18 118.0 22.9 205 269-478 10-222 (225)
59 4a1s_A PINS, partner of inscut 99.6 1.9E-14 6.5E-19 137.3 17.6 265 235-501 51-372 (411)
60 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.1E-14 1.1E-18 127.6 17.7 220 277-503 15-246 (275)
61 3sf4_A G-protein-signaling mod 99.6 3.6E-14 1.2E-18 135.0 19.0 127 372-499 190-334 (406)
62 3ro2_A PINS homolog, G-protein 99.6 6.1E-14 2.1E-18 129.6 18.2 266 235-502 8-333 (338)
63 3sf4_A G-protein-signaling mod 99.6 2.7E-14 9.1E-19 136.0 14.3 255 235-490 50-365 (406)
64 4e6h_A MRNA 3'-END-processing 99.5 3.2E-11 1.1E-15 119.8 34.1 416 67-504 64-573 (679)
65 3ulq_A Response regulator aspa 99.5 3.5E-13 1.2E-17 127.1 19.1 227 273-501 109-368 (383)
66 4a1s_A PINS, partner of inscut 99.5 1.3E-13 4.3E-18 131.6 14.8 234 235-469 89-374 (411)
67 3vtx_A MAMA; tetratricopeptide 99.5 6.3E-13 2.2E-17 111.1 16.9 166 301-472 4-175 (184)
68 2ond_A Cleavage stimulation fa 99.5 2.9E-12 9.9E-17 116.7 22.1 217 249-471 33-274 (308)
69 4gyw_A UDP-N-acetylglucosamine 99.5 5.9E-13 2E-17 133.8 18.0 163 332-501 8-174 (723)
70 3as5_A MAMA; tetratricopeptide 99.5 9.5E-13 3.2E-17 110.0 16.1 165 335-504 10-176 (186)
71 3nf1_A KLC 1, kinesin light ch 99.5 1.2E-13 4.2E-18 126.1 11.2 238 234-501 29-307 (311)
72 2ond_A Cleavage stimulation fa 99.5 1.3E-11 4.4E-16 112.4 24.3 214 284-504 33-273 (308)
73 3ro2_A PINS homolog, G-protein 99.5 1.1E-12 3.6E-17 121.2 15.7 201 269-470 85-335 (338)
74 3ulq_A Response regulator aspa 99.5 3.4E-12 1.2E-16 120.3 19.0 230 238-469 109-370 (383)
75 1hz4_A MALT regulatory protein 99.4 7.4E-11 2.5E-15 110.7 26.9 258 241-500 23-321 (373)
76 4i17_A Hypothetical protein; T 99.4 5.3E-12 1.8E-16 109.5 17.6 189 302-504 7-212 (228)
77 4abn_A Tetratricopeptide repea 99.4 1.8E-12 6.2E-17 125.3 15.8 179 318-503 84-289 (474)
78 4i17_A Hypothetical protein; T 99.4 1.5E-11 5.2E-16 106.6 20.0 206 264-483 4-225 (228)
79 3nf1_A KLC 1, kinesin light ch 99.4 7.3E-13 2.5E-17 120.9 10.0 237 201-470 27-310 (311)
80 3q15_A PSP28, response regulat 99.4 1.4E-11 4.8E-16 115.8 18.2 222 277-500 111-364 (378)
81 3as5_A MAMA; tetratricopeptide 99.4 3E-11 1E-15 100.7 17.2 168 302-474 8-180 (186)
82 1qqe_A Vesicular transport pro 99.3 3.1E-11 1E-15 108.9 15.4 184 311-498 46-266 (292)
83 1hz4_A MALT regulatory protein 99.3 1.3E-10 4.5E-15 109.0 20.3 232 235-469 56-324 (373)
84 3q15_A PSP28, response regulat 99.3 2.6E-10 9E-15 107.1 22.3 231 236-468 105-366 (378)
85 3mv2_B Coatomer subunit epsilo 99.3 3.9E-10 1.3E-14 99.4 20.6 244 209-476 21-291 (310)
86 3qky_A Outer membrane assembly 99.3 1.4E-10 4.9E-15 102.7 18.0 184 301-503 14-226 (261)
87 3edt_B KLC 2, kinesin light ch 99.3 2.6E-11 8.7E-16 108.8 12.7 200 301-501 42-281 (283)
88 3mv2_B Coatomer subunit epsilo 99.3 1.8E-09 6.1E-14 95.2 23.6 241 239-503 20-284 (310)
89 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.6E-10 8.8E-15 98.4 18.2 181 303-505 5-217 (225)
90 3qky_A Outer membrane assembly 99.3 1.9E-10 6.6E-15 101.9 17.2 206 264-492 12-252 (261)
91 1qqe_A Vesicular transport pro 99.3 1.7E-10 5.9E-15 103.9 16.9 200 277-480 47-282 (292)
92 4gyw_A UDP-N-acetylglucosamine 99.3 9.1E-11 3.1E-15 118.0 16.5 164 299-469 6-176 (723)
93 3qou_A Protein YBBN; thioredox 99.3 2.4E-10 8.3E-15 102.6 17.2 174 320-500 104-283 (287)
94 4ga2_A E3 SUMO-protein ligase 99.2 1.6E-11 5.3E-16 98.4 7.2 140 341-487 5-149 (150)
95 3gyz_A Chaperone protein IPGC; 99.2 1.2E-10 4.2E-15 92.6 11.0 103 401-503 30-135 (151)
96 2fo7_A Synthetic consensus TPR 99.2 4.6E-10 1.6E-14 87.9 14.2 129 372-503 4-134 (136)
97 3rjv_A Putative SEL1 repeat pr 99.2 2.8E-09 9.6E-14 90.8 20.0 173 321-504 5-200 (212)
98 2r5s_A Uncharacterized protein 99.2 2.8E-10 9.7E-15 94.0 12.3 155 339-500 12-172 (176)
99 2pzi_A Probable serine/threoni 99.1 1.3E-10 4.5E-15 117.5 11.3 166 313-486 402-582 (681)
100 3urz_A Uncharacterized protein 99.1 5.2E-10 1.8E-14 95.1 13.2 135 338-480 59-198 (208)
101 3edt_B KLC 2, kinesin light ch 99.1 7.6E-10 2.6E-14 99.1 14.7 200 267-467 43-281 (283)
102 4ga2_A E3 SUMO-protein ligase 99.1 1.1E-10 3.9E-15 93.3 8.2 123 377-503 5-131 (150)
103 2vsy_A XCC0866; transferase, g 99.1 8.2E-10 2.8E-14 109.8 15.0 159 315-479 2-169 (568)
104 4gco_A Protein STI-1; structur 99.1 8.2E-10 2.8E-14 85.2 11.7 97 407-503 14-112 (126)
105 2fo7_A Synthetic consensus TPR 99.1 2.5E-09 8.5E-14 83.6 14.2 131 335-470 3-135 (136)
106 2ifu_A Gamma-SNAP; membrane fu 99.1 2.6E-09 9E-14 96.9 16.1 219 245-493 4-253 (307)
107 3u3w_A Transcriptional activat 99.1 3.1E-08 1.1E-12 89.2 23.0 162 338-500 80-265 (293)
108 2ifu_A Gamma-SNAP; membrane fu 99.1 1.9E-09 6.6E-14 97.8 14.5 198 279-499 3-222 (307)
109 2vgx_A Chaperone SYCD; alterna 99.1 8.4E-10 2.9E-14 87.9 9.9 102 402-503 16-120 (148)
110 2pzi_A Probable serine/threoni 99.1 6.7E-09 2.3E-13 105.1 18.8 167 278-453 402-583 (681)
111 3dra_A Protein farnesyltransfe 99.0 7.4E-08 2.5E-12 85.9 23.1 209 285-500 51-286 (306)
112 2qfc_A PLCR protein; TPR, HTH, 99.0 1.6E-08 5.3E-13 91.2 18.7 165 335-500 77-265 (293)
113 4gco_A Protein STI-1; structur 99.0 2.6E-09 8.8E-14 82.3 11.2 115 365-482 8-125 (126)
114 3urz_A Uncharacterized protein 99.0 2E-09 6.9E-14 91.4 11.5 158 339-504 10-189 (208)
115 2vsy_A XCC0866; transferase, g 99.0 5.1E-09 1.8E-13 104.0 16.2 150 347-503 3-159 (568)
116 3qou_A Protein YBBN; thioredox 99.0 1.1E-08 3.7E-13 91.8 16.1 162 299-466 114-283 (287)
117 2r5s_A Uncharacterized protein 99.0 4.9E-09 1.7E-13 86.4 12.9 155 305-466 9-172 (176)
118 1hh8_A P67PHOX, NCF-2, neutrop 99.0 7.9E-09 2.7E-13 88.2 14.3 127 335-469 8-152 (213)
119 2uy1_A Cleavage stimulation fa 99.0 2.6E-07 8.9E-12 89.1 26.4 371 18-466 10-412 (493)
120 2xcb_A PCRH, regulatory protei 99.0 4.3E-09 1.5E-13 83.2 11.4 98 406-503 18-117 (142)
121 3rjv_A Putative SEL1 repeat pr 99.0 8.5E-08 2.9E-12 81.6 20.2 172 286-469 5-199 (212)
122 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.6E-08 5.4E-13 87.1 15.2 186 266-473 3-219 (225)
123 4f3v_A ESX-1 secretion system 99.0 2.2E-08 7.5E-13 87.1 15.9 184 314-504 18-240 (282)
124 2e2e_A Formate-dependent nitri 98.9 6.6E-09 2.3E-13 85.7 11.3 122 380-504 21-147 (177)
125 1hxi_A PEX5, peroxisome target 98.9 6.7E-09 2.3E-13 79.4 10.4 96 408-503 19-116 (121)
126 1a17_A Serine/threonine protei 98.9 2.1E-08 7.1E-13 81.6 14.1 127 371-500 15-145 (166)
127 3upv_A Heat shock protein STI1 98.9 1.3E-08 4.3E-13 78.6 11.4 97 406-502 4-102 (126)
128 2kck_A TPR repeat; tetratricop 98.9 1.6E-08 5.6E-13 75.9 11.6 101 405-505 5-110 (112)
129 2c2l_A CHIP, carboxy terminus 98.9 4.4E-09 1.5E-13 94.0 9.4 190 302-501 4-199 (281)
130 1p5q_A FKBP52, FK506-binding p 98.9 1.3E-08 4.3E-13 93.5 11.9 145 332-500 146-293 (336)
131 2uy1_A Cleavage stimulation fa 98.9 2.1E-07 7.1E-12 89.8 20.8 353 116-500 6-412 (493)
132 2lni_A Stress-induced-phosphop 98.9 3.3E-08 1.1E-12 76.9 12.7 115 369-486 16-132 (133)
133 2vyi_A SGTA protein; chaperone 98.9 3E-08 1E-12 76.8 12.0 117 369-488 12-130 (131)
134 3dra_A Protein farnesyltransfe 98.9 1.7E-06 5.8E-11 77.1 24.5 231 244-481 44-302 (306)
135 1na0_A Designed protein CTPR3; 98.8 4.9E-08 1.7E-12 74.8 12.7 115 369-486 9-125 (125)
136 3q49_B STIP1 homology and U bo 98.8 4.8E-08 1.7E-12 76.5 12.6 100 404-503 7-108 (137)
137 3sz7_A HSC70 cochaperone (SGT) 98.8 3.1E-08 1.1E-12 80.5 11.7 109 368-479 10-120 (164)
138 2vgx_A Chaperone SYCD; alterna 98.8 1.3E-08 4.4E-13 81.0 9.1 116 355-476 9-127 (148)
139 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.6E-07 5.6E-12 79.9 16.6 131 304-438 8-154 (213)
140 2lni_A Stress-induced-phosphop 98.8 6.7E-08 2.3E-12 75.1 12.9 101 404-504 14-116 (133)
141 4gcn_A Protein STI-1; structur 98.8 2.6E-08 9E-13 76.8 10.2 96 407-502 9-113 (127)
142 2fbn_A 70 kDa peptidylprolyl i 98.8 4.3E-09 1.5E-13 88.7 5.8 170 311-503 13-188 (198)
143 4f3v_A ESX-1 secretion system 98.8 1.2E-07 4.2E-12 82.4 14.9 139 336-481 105-250 (282)
144 3gyz_A Chaperone protein IPGC; 98.8 8.6E-09 2.9E-13 81.9 7.1 104 365-472 31-138 (151)
145 1elw_A TPR1-domain of HOP; HOP 98.8 6.6E-08 2.2E-12 73.2 11.5 98 406-503 4-103 (118)
146 2dba_A Smooth muscle cell asso 98.8 1.4E-07 4.8E-12 74.9 13.5 99 405-503 27-130 (148)
147 3u3w_A Transcriptional activat 98.8 1.6E-06 5.3E-11 78.0 21.6 161 307-468 80-267 (293)
148 1na0_A Designed protein CTPR3; 98.8 1.1E-07 3.7E-12 72.8 12.0 98 406-503 9-108 (125)
149 2xcb_A PCRH, regulatory protei 98.8 4.4E-08 1.5E-12 77.3 9.8 113 365-480 13-128 (142)
150 2xev_A YBGF; tetratricopeptide 98.7 6.6E-08 2.3E-12 74.8 10.5 93 410-502 6-106 (129)
151 2qfc_A PLCR protein; TPR, HTH, 98.7 5.6E-07 1.9E-11 80.9 17.6 165 303-468 76-267 (293)
152 2hr2_A Hypothetical protein; a 98.7 6.9E-08 2.3E-12 75.7 9.9 96 407-502 12-132 (159)
153 2vyi_A SGTA protein; chaperone 98.7 1.6E-07 5.4E-12 72.6 12.0 99 405-503 11-111 (131)
154 3gw4_A Uncharacterized protein 98.7 3.7E-07 1.3E-11 76.9 14.9 131 369-500 26-175 (203)
155 1elw_A TPR1-domain of HOP; HOP 98.7 2.5E-07 8.5E-12 69.9 11.8 111 369-482 4-116 (118)
156 3k9i_A BH0479 protein; putativ 98.7 3.7E-08 1.3E-12 74.7 6.9 82 420-501 4-90 (117)
157 2dba_A Smooth muscle cell asso 98.7 3.9E-07 1.3E-11 72.2 13.3 114 368-485 27-146 (148)
158 3upv_A Heat shock protein STI1 98.7 2.6E-07 8.9E-12 71.1 11.5 111 370-483 5-123 (126)
159 2e2e_A Formate-dependent nitri 98.7 1.5E-07 5.1E-12 77.5 10.7 126 344-475 21-152 (177)
160 3rkv_A Putative peptidylprolyl 98.6 1.6E-07 5.3E-12 76.1 10.0 64 439-502 64-127 (162)
161 3gw4_A Uncharacterized protein 98.6 3.2E-07 1.1E-11 77.4 12.2 154 314-468 4-177 (203)
162 3q7a_A Farnesyltransferase alp 98.6 5.2E-06 1.8E-10 74.8 20.4 33 469-501 299-331 (349)
163 1a17_A Serine/threonine protei 98.6 4.1E-07 1.4E-11 73.7 12.3 99 406-504 13-113 (166)
164 3sz7_A HSC70 cochaperone (SGT) 98.6 3.2E-07 1.1E-11 74.4 11.4 100 405-504 10-111 (164)
165 1elr_A TPR2A-domain of HOP; HO 98.6 2.5E-07 8.5E-12 71.5 10.0 108 371-482 6-122 (131)
166 3dss_A Geranylgeranyl transfer 98.6 2.1E-05 7.1E-10 70.6 22.8 116 243-361 40-173 (331)
167 2fbn_A 70 kDa peptidylprolyl i 98.6 1.1E-07 3.6E-12 80.1 7.6 120 381-503 16-153 (198)
168 3q49_B STIP1 homology and U bo 98.6 5.7E-07 1.9E-11 70.3 11.3 115 368-485 8-129 (137)
169 4b4t_Q 26S proteasome regulato 98.6 1.7E-06 5.7E-11 82.7 16.7 165 335-500 57-244 (434)
170 3dss_A Geranylgeranyl transfer 98.6 1.9E-05 6.4E-10 70.8 22.1 214 284-503 47-306 (331)
171 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 5.8E-07 2E-11 86.2 12.7 144 333-500 268-414 (457)
172 2if4_A ATFKBP42; FKBP-like, al 98.5 1.8E-07 6.2E-12 85.8 8.8 151 333-505 179-332 (338)
173 3q7a_A Farnesyltransferase alp 98.5 3.9E-05 1.3E-09 69.1 23.3 232 242-481 64-346 (349)
174 2c2l_A CHIP, carboxy terminus 98.5 7.1E-07 2.4E-11 79.5 11.9 105 368-476 3-110 (281)
175 1wao_1 Serine/threonine protei 98.5 3.1E-07 1.1E-11 88.5 9.9 117 376-496 13-134 (477)
176 4gcn_A Protein STI-1; structur 98.5 6.7E-07 2.3E-11 68.8 9.9 38 440-478 85-122 (127)
177 1p5q_A FKBP52, FK506-binding p 98.5 5.3E-07 1.8E-11 82.7 10.7 115 386-503 129-261 (336)
178 3ro3_A PINS homolog, G-protein 98.5 1.1E-06 3.8E-11 70.7 10.9 129 372-501 12-158 (164)
179 1elr_A TPR2A-domain of HOP; HO 98.5 7.8E-07 2.7E-11 68.6 9.5 98 406-503 4-110 (131)
180 3k9i_A BH0479 protein; putativ 98.5 4.8E-07 1.6E-11 68.5 7.9 93 382-476 3-99 (117)
181 2xev_A YBGF; tetratricopeptide 98.5 3E-06 1E-10 65.3 12.5 105 374-482 7-120 (129)
182 2l6j_A TPR repeat-containing p 98.4 1.3E-07 4.4E-12 70.8 4.3 93 405-497 3-103 (111)
183 3n71_A Histone lysine methyltr 98.4 3.5E-06 1.2E-10 80.5 14.8 124 378-502 318-465 (490)
184 2kck_A TPR repeat; tetratricop 98.4 1.7E-06 5.9E-11 64.5 10.2 101 369-472 6-111 (112)
185 1ihg_A Cyclophilin 40; ppiase 98.4 1.7E-06 5.7E-11 80.3 11.7 137 334-494 224-363 (370)
186 3rkv_A Putative peptidylprolyl 98.4 1.1E-06 3.8E-11 71.0 9.1 134 334-488 12-148 (162)
187 3ma5_A Tetratricopeptide repea 98.4 1.7E-06 5.7E-11 63.2 8.9 65 437-501 6-70 (100)
188 1dce_A Protein (RAB geranylger 98.4 1.4E-05 4.9E-10 78.3 17.6 167 317-490 44-244 (567)
189 2kat_A Uncharacterized protein 98.4 2.2E-06 7.5E-11 64.5 9.3 80 388-469 3-84 (115)
190 1na3_A Designed protein CTPR2; 98.4 3E-06 1E-10 60.5 9.6 81 406-486 9-91 (91)
191 1hxi_A PEX5, peroxisome target 98.3 1.2E-06 4.1E-11 66.6 7.7 97 372-472 20-119 (121)
192 2hr2_A Hypothetical protein; a 98.3 5.9E-07 2E-11 70.4 5.5 120 335-481 13-145 (159)
193 3ro3_A PINS homolog, G-protein 98.3 3.8E-06 1.3E-10 67.4 10.4 134 335-469 11-160 (164)
194 1zu2_A Mitochondrial import re 98.3 7.5E-07 2.6E-11 69.6 5.5 87 418-504 14-123 (158)
195 4b4t_Q 26S proteasome regulato 98.3 9.1E-06 3.1E-10 77.5 14.2 161 340-501 11-204 (434)
196 3bee_A Putative YFRE protein; 98.3 4.7E-06 1.6E-10 59.4 9.1 73 435-508 3-78 (93)
197 2if4_A ATFKBP42; FKBP-like, al 98.3 2.1E-06 7.2E-11 78.7 8.9 115 371-503 181-295 (338)
198 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3.5E-06 1.2E-10 80.8 10.3 115 386-503 250-382 (457)
199 1ihg_A Cyclophilin 40; ppiase 98.3 4.4E-06 1.5E-10 77.4 10.6 96 408-503 225-338 (370)
200 1wao_1 Serine/threonine protei 98.2 2.1E-06 7.1E-11 82.7 6.8 96 409-504 9-106 (477)
201 2l6j_A TPR repeat-containing p 98.2 9.7E-06 3.3E-10 60.3 9.0 69 436-504 2-70 (111)
202 1klx_A Cysteine rich protein B 98.2 2.7E-05 9.1E-10 60.6 11.6 110 386-503 11-128 (138)
203 2kat_A Uncharacterized protein 98.1 2.3E-05 7.9E-10 58.8 10.1 80 424-503 3-84 (115)
204 1na3_A Designed protein CTPR2; 98.1 2.1E-05 7.1E-10 55.9 8.7 67 437-503 8-74 (91)
205 3n71_A Histone lysine methyltr 98.0 3.7E-05 1.2E-09 73.6 11.2 87 414-500 317-421 (490)
206 1klx_A Cysteine rich protein B 98.0 0.00011 3.6E-09 57.2 11.6 119 347-478 9-135 (138)
207 3lvg_A Clathrin heavy chain 1; 98.0 3.9E-07 1.3E-11 83.1 -2.8 262 68-354 53-325 (624)
208 3qww_A SET and MYND domain-con 97.9 4.7E-05 1.6E-09 71.6 10.5 83 418-500 310-410 (433)
209 2kc7_A BFR218_protein; tetratr 97.9 1.5E-05 5.1E-10 57.9 5.8 81 411-499 5-88 (99)
210 1dce_A Protein (RAB geranylger 97.9 0.0002 6.8E-09 70.3 15.3 154 346-504 42-224 (567)
211 1zu2_A Mitochondrial import re 97.9 1.4E-05 4.8E-10 62.5 5.5 106 386-501 18-147 (158)
212 2kc7_A BFR218_protein; tetratr 97.8 7.2E-05 2.5E-09 54.1 7.6 63 443-505 5-68 (99)
213 3ma5_A Tetratricopeptide repea 97.8 0.00013 4.3E-09 53.0 8.9 82 404-485 5-90 (100)
214 3u64_A Protein TP_0956; tetrat 97.8 0.00016 5.3E-09 62.3 10.4 88 422-509 179-277 (301)
215 3qwp_A SET and MYND domain-con 97.8 0.00016 5.6E-09 68.0 11.6 88 413-500 294-399 (429)
216 3ly7_A Transcriptional activat 97.8 0.001 3.5E-08 59.9 15.7 140 329-471 190-343 (372)
217 2v5f_A Prolyl 4-hydroxylase su 97.6 0.00067 2.3E-08 49.5 10.6 76 404-479 3-87 (104)
218 1pc2_A Mitochondria fission pr 97.6 0.00039 1.3E-08 53.7 9.1 89 386-476 14-109 (152)
219 3qww_A SET and MYND domain-con 97.6 0.00054 1.8E-08 64.4 11.9 94 382-476 311-425 (433)
220 3qwp_A SET and MYND domain-con 97.5 0.00093 3.2E-08 62.9 12.3 98 379-477 297-415 (429)
221 1pc2_A Mitochondria fission pr 97.5 0.00052 1.8E-08 53.0 8.5 83 422-504 14-103 (152)
222 3lvg_A Clathrin heavy chain 1; 97.4 4.4E-07 1.5E-11 82.8 -10.4 223 37-279 53-275 (624)
223 1qsa_A Protein (soluble lytic 97.4 0.11 3.7E-06 51.1 28.0 116 347-466 228-347 (618)
224 3ly7_A Transcriptional activat 97.3 0.0022 7.6E-08 57.7 11.5 137 365-505 190-343 (372)
225 1nzn_A CGI-135 protein, fissio 97.2 0.0058 2E-07 45.3 10.8 90 386-477 17-113 (126)
226 3mkq_A Coatomer beta'-subunit; 97.1 0.038 1.3E-06 57.2 20.7 152 148-326 608-760 (814)
227 1wy6_A Hypothetical protein ST 97.0 0.055 1.9E-06 40.2 14.0 141 343-504 17-157 (172)
228 3bee_A Putative YFRE protein; 97.0 0.0057 2E-07 43.2 8.8 68 403-470 3-75 (93)
229 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0042 1.5E-07 45.1 8.4 67 437-503 4-77 (104)
230 3mkq_A Coatomer beta'-subunit; 96.6 0.039 1.3E-06 57.1 15.9 152 13-195 609-761 (814)
231 3u64_A Protein TP_0956; tetrat 96.5 0.0066 2.3E-07 52.3 7.1 106 386-500 179-297 (301)
232 4h7y_A Dual specificity protei 96.5 0.027 9.1E-07 42.8 9.4 105 368-476 12-132 (161)
233 3mkq_B Coatomer subunit alpha; 96.4 0.17 5.8E-06 40.1 14.5 102 47-165 14-115 (177)
234 1nzn_A CGI-135 protein, fissio 96.4 0.016 5.5E-07 42.9 8.0 84 421-504 16-106 (126)
235 3mkq_B Coatomer subunit alpha; 96.3 0.18 6E-06 40.0 13.6 104 310-433 13-116 (177)
236 1y8m_A FIS1; mitochondria, unk 96.1 0.13 4.5E-06 38.8 11.5 74 403-476 36-115 (144)
237 1wy6_A Hypothetical protein ST 95.9 0.34 1.2E-05 36.1 13.0 127 5-135 7-156 (172)
238 4gns_B Protein CSD3, chitin bi 95.9 0.042 1.4E-06 54.9 10.7 57 442-498 341-397 (754)
239 3o48_A Mitochondria fission 1 95.9 0.056 1.9E-06 40.2 8.6 75 402-476 36-116 (134)
240 2wpv_A GET4, UPF0363 protein Y 95.7 1 3.6E-05 39.6 17.8 153 19-182 13-177 (312)
241 4h7y_A Dual specificity protei 95.6 0.15 5.2E-06 38.8 10.0 98 330-432 10-120 (161)
242 1y8m_A FIS1; mitochondria, unk 95.6 0.13 4.3E-06 38.9 9.6 71 434-504 35-109 (144)
243 4ady_A RPN2, 26S proteasome re 95.5 2.6 8.9E-05 43.3 32.8 257 178-441 382-664 (963)
244 3o48_A Mitochondria fission 1 95.1 0.074 2.5E-06 39.6 6.9 71 434-504 36-110 (134)
245 4ady_A RPN2, 26S proteasome re 94.7 4.4 0.00015 41.6 33.6 255 208-469 381-659 (963)
246 3ffl_A Anaphase-promoting comp 94.7 0.26 8.7E-06 38.4 9.3 86 413-498 27-148 (167)
247 2ff4_A Probable regulatory pro 94.7 0.09 3.1E-06 48.7 8.1 68 442-509 175-247 (388)
248 3lpz_A GET4 (YOR164C homolog); 94.6 2.2 7.6E-05 37.8 22.4 170 303-501 36-216 (336)
249 3txn_A 26S proteasome regulato 93.8 2.7 9.2E-05 38.5 15.6 89 411-499 104-208 (394)
250 3lpz_A GET4 (YOR164C homolog); 93.4 4 0.00014 36.2 21.6 113 39-162 36-159 (336)
251 4b4t_P 26S proteasome regulato 93.3 5.4 0.00019 37.5 21.2 92 409-500 140-246 (445)
252 3ffl_A Anaphase-promoting comp 93.1 0.61 2.1E-05 36.3 8.7 136 335-482 22-165 (167)
253 1qsa_A Protein (soluble lytic 93.1 7.2 0.00025 38.3 31.5 449 15-505 18-483 (618)
254 2p58_C Putative type III secre 92.6 1.8 6E-05 30.1 9.2 87 17-108 21-107 (116)
255 2uwj_G Type III export protein 92.6 1.6 5.6E-05 30.2 9.0 87 17-108 20-106 (115)
256 1zbp_A Hypothetical protein VP 91.2 0.71 2.4E-05 39.3 7.6 54 416-469 7-62 (273)
257 3ltm_A Alpha-REP4; protein eng 91.0 5.7 0.00019 32.6 17.5 9 145-153 39-47 (211)
258 2wpv_A GET4, UPF0363 protein Y 90.8 8.2 0.00028 34.0 20.7 171 303-501 34-217 (312)
259 2uwj_G Type III export protein 90.7 3 0.0001 28.9 9.2 88 282-375 21-108 (115)
260 2p58_C Putative type III secre 90.4 3.3 0.00011 28.8 10.0 88 282-375 22-109 (116)
261 4gns_B Protein CSD3, chitin bi 89.5 2.9 9.8E-05 42.0 11.5 121 237-359 253-397 (754)
262 1v54_E Cytochrome C oxidase po 89.3 2.6 9E-05 29.4 7.7 61 85-146 26-86 (109)
263 4fhn_B Nucleoporin NUP120; pro 89.2 14 0.00048 39.6 17.5 189 307-499 817-1048(1139)
264 3ltm_A Alpha-REP4; protein eng 88.5 9.1 0.00031 31.3 19.2 9 207-215 39-47 (211)
265 2ff4_A Probable regulatory pro 87.3 7.7 0.00026 35.7 12.3 58 409-466 174-233 (388)
266 3ltj_A Alpharep-4; protein eng 87.1 11 0.00037 30.5 18.9 18 199-216 57-74 (201)
267 4b4t_R RPN7, 26S proteasome re 86.8 5.4 0.00019 37.3 11.2 91 408-498 133-234 (429)
268 4fhn_B Nucleoporin NUP120; pro 84.9 22 0.00076 38.2 16.0 86 106-191 901-992 (1139)
269 1zbp_A Hypothetical protein VP 84.9 2.9 9.8E-05 35.6 7.3 50 344-397 8-58 (273)
270 1v54_E Cytochrome C oxidase po 84.8 8.2 0.00028 27.0 9.6 59 421-479 25-86 (109)
271 2y69_E Cytochrome C oxidase su 83.9 6.4 0.00022 29.2 7.7 61 86-147 70-130 (152)
272 3esl_A Checkpoint serine/threo 83.7 11 0.00037 30.5 9.8 49 420-468 93-145 (202)
273 1oyz_A Hypothetical protein YI 81.2 25 0.00087 30.1 20.8 47 37-83 36-82 (280)
274 3ltj_A Alpharep-4; protein eng 80.2 21 0.00073 28.7 19.1 112 167-282 56-167 (201)
275 2y69_E Cytochrome C oxidase su 78.1 19 0.00065 26.8 9.6 56 424-479 71-129 (152)
276 4b4t_R RPN7, 26S proteasome re 78.0 12 0.00041 34.9 9.8 95 304-399 133-237 (429)
277 4a1g_A Mitotic checkpoint seri 77.9 21 0.0007 27.4 9.2 49 457-505 84-134 (152)
278 4b4t_P 26S proteasome regulato 73.8 59 0.002 30.4 22.3 96 336-432 140-244 (445)
279 2wvi_A Mitotic checkpoint seri 71.3 30 0.001 26.9 8.7 31 438-468 96-126 (164)
280 1oyz_A Hypothetical protein YI 69.2 53 0.0018 28.0 23.9 11 456-466 252-262 (280)
281 3bqo_A Telomeric repeat-bindin 64.7 18 0.0006 28.9 6.2 43 445-487 124-166 (211)
282 4b4t_S RPN3, 26S proteasome re 62.4 19 0.00066 34.1 7.2 63 369-432 231-296 (523)
283 4gq2_M Nucleoporin NUP120; bet 58.8 74 0.0025 33.3 11.6 91 375-472 816-932 (950)
284 2d2s_A Exocyst complex compone 58.6 38 0.0013 28.3 7.8 88 75-165 24-117 (235)
285 3esl_A Checkpoint serine/threo 57.0 76 0.0026 25.6 9.7 55 83-137 93-148 (202)
286 3bu8_A Telomeric repeat-bindin 55.5 29 0.00098 28.2 6.0 57 386-442 88-151 (235)
287 1ya0_A SMG-7 transcript varian 54.0 47 0.0016 31.5 8.4 46 451-496 165-210 (497)
288 3kae_A CDC27, possible protein 53.4 79 0.0027 24.7 10.0 52 448-499 72-141 (242)
289 1wgl_A TOLL-interacting protei 52.6 11 0.00038 23.4 2.6 47 459-506 11-57 (59)
290 1wdy_A 2-5A-dependent ribonucl 51.1 1.1E+02 0.0038 25.7 11.8 23 44-66 8-30 (285)
291 3bu8_A Telomeric repeat-bindin 49.9 49 0.0017 26.9 6.5 71 422-492 88-168 (235)
292 2d2s_A Exocyst complex compone 49.0 79 0.0027 26.4 8.2 23 238-260 24-46 (235)
293 3txn_A 26S proteasome regulato 48.8 1.6E+02 0.0054 26.9 27.3 86 403-504 253-346 (394)
294 3mv2_A Coatomer subunit alpha; 48.4 1.4E+02 0.0048 26.2 12.3 55 433-501 200-256 (325)
295 2ijq_A Hypothetical protein; s 48.2 93 0.0032 24.1 7.8 51 417-467 43-104 (161)
296 1k1a_A B-cell lymphoma 3-encod 46.8 1.2E+02 0.004 24.8 9.4 56 10-65 13-70 (241)
297 4b4t_S RPN3, 26S proteasome re 46.3 42 0.0014 31.8 6.6 67 406-472 231-304 (523)
298 2r9g_A AAA ATPase, central reg 44.2 1.2E+02 0.0042 24.3 9.3 63 235-298 14-84 (204)
299 2cfu_A SDSA1; SDS-hydrolase, l 43.3 63 0.0022 32.1 7.9 66 422-490 436-501 (658)
300 4aez_C MAD3, mitotic spindle c 39.9 1.2E+02 0.004 25.0 7.5 76 390-468 97-180 (223)
301 4a1g_A Mitotic checkpoint seri 39.5 1.3E+02 0.0043 23.1 8.8 44 425-468 84-131 (152)
302 2fu4_A Ferric uptake regulatio 39.3 80 0.0027 20.7 6.2 61 93-154 6-67 (83)
303 2qx5_A Nucleoporin NIC96; mRNA 39.2 3E+02 0.01 27.3 14.5 22 483-507 549-570 (661)
304 3ctd_A Putative ATPase, AAA fa 38.8 1.6E+02 0.0054 24.0 8.7 66 233-298 33-106 (213)
305 3bqo_A Telomeric repeat-bindin 36.8 30 0.001 27.7 3.4 44 386-432 94-143 (211)
306 1k1a_A B-cell lymphoma 3-encod 36.4 1.7E+02 0.0059 23.7 13.0 22 80-101 17-38 (241)
307 3ygs_P Procaspase 9; apoptosis 35.8 57 0.0019 22.6 4.5 38 316-353 51-88 (97)
308 1bd8_A P19INK4D CDK4/6 inhibit 35.0 77 0.0026 23.7 5.8 136 46-195 7-155 (156)
309 1oai_A Nuclear RNA export fact 34.8 25 0.00084 21.8 2.2 24 346-369 33-56 (59)
310 2nsz_A Programmed cell death p 34.7 1.4E+02 0.0046 22.0 6.9 21 238-258 13-33 (129)
311 3bge_A Predicted ATPase; struc 33.6 1.9E+02 0.0064 23.3 9.5 46 237-282 9-57 (201)
312 3ljn_A Hypothetical protein; a 32.8 2.4E+02 0.0081 25.0 9.6 76 180-257 180-266 (364)
313 3ygs_P Procaspase 9; apoptosis 32.3 86 0.0029 21.7 5.0 37 153-189 51-87 (97)
314 1n11_A Ankyrin; clathrin, BAND 31.7 3E+02 0.01 25.1 11.7 345 8-368 16-371 (437)
315 4gq2_M Nucleoporin NUP120; bet 31.3 4.7E+02 0.016 27.3 14.5 128 175-315 815-949 (950)
316 3eu9_A Huntingtin-interacting 31.2 2.1E+02 0.0071 23.1 13.5 15 49-63 17-31 (240)
317 2qx5_A Nucleoporin NIC96; mRNA 30.7 4.1E+02 0.014 26.3 25.7 39 43-81 157-198 (661)
318 2fe3_A Peroxide operon regulat 30.2 1.4E+02 0.0048 22.4 6.3 59 95-154 13-71 (145)
319 1mzb_A Ferric uptake regulatio 29.9 1.5E+02 0.005 22.0 6.3 59 94-153 8-67 (136)
320 2ion_A PDCD4, programmed cell 29.8 1.8E+02 0.0063 22.1 6.9 22 237-258 14-35 (152)
321 3eyy_A Putative iron uptake re 29.4 87 0.003 23.6 5.0 59 93-153 8-66 (145)
322 3ax2_A Mitochondrial import re 28.4 1.2E+02 0.0043 19.6 4.8 26 444-469 23-48 (73)
323 2r9g_A AAA ATPase, central reg 28.4 2.3E+02 0.008 22.8 8.1 61 75-136 17-85 (204)
324 3jxi_A Vanilloid receptor-rela 28.3 80 0.0027 26.4 5.3 25 79-103 12-36 (260)
325 2w57_A Ferric uptake regulatio 28.2 1.5E+02 0.0053 22.4 6.3 61 93-154 6-67 (150)
326 3mwm_A ZUR, putative metal upt 28.1 96 0.0033 23.2 5.0 47 8-54 18-64 (139)
327 3l6a_A Eukaryotic translation 28.0 3E+02 0.01 24.7 9.1 64 40-104 14-83 (364)
328 2o03_A Probable zinc uptake re 27.3 98 0.0034 22.8 4.9 46 8-53 15-60 (131)
329 2ion_A PDCD4, programmed cell 26.2 2.2E+02 0.0074 21.7 8.7 65 204-268 12-81 (152)
330 2crb_A Nuclear receptor bindin 25.9 1.1E+02 0.0036 21.0 4.1 24 441-464 18-41 (97)
331 2fu4_A Ferric uptake regulatio 25.8 1.4E+02 0.0048 19.4 6.8 59 257-316 7-66 (83)
332 2fe3_A Peroxide operon regulat 25.1 2.2E+02 0.0074 21.3 6.6 14 348-361 36-49 (145)
333 3kea_A K1L; tropism, ANK repea 24.5 3.2E+02 0.011 23.1 14.0 228 49-292 7-243 (285)
334 1bpo_A Protein (clathrin); cla 24.5 4.4E+02 0.015 24.7 12.2 69 295-363 354-425 (494)
335 4aez_C MAD3, mitotic spindle c 24.2 3E+02 0.01 22.6 9.9 44 387-431 131-175 (223)
336 4ets_A Ferric uptake regulatio 24.2 1.8E+02 0.0063 22.3 6.1 68 86-154 14-84 (162)
337 2b7e_A PRE-mRNA processing pro 24.2 62 0.0021 20.0 2.6 29 86-114 3-31 (59)
338 2xig_A Ferric uptake regulatio 23.9 2E+02 0.0067 21.8 6.2 59 95-154 18-76 (150)
339 2o03_A Probable zinc uptake re 23.9 1.2E+02 0.0041 22.3 4.9 43 75-117 16-58 (131)
340 3u84_A Menin; MLL, JUND, ledgf 23.7 2.7E+02 0.0091 25.5 7.4 89 386-490 302-425 (550)
341 3mkr_B Coatomer subunit alpha; 23.5 3.8E+02 0.013 23.5 10.7 56 433-502 191-248 (320)
342 3qye_A TBC1 domain family memb 23.3 3.8E+02 0.013 23.5 9.4 103 90-192 209-316 (331)
343 2xig_A Ferric uptake regulatio 23.2 1.3E+02 0.0043 22.9 4.9 59 26-85 15-77 (150)
344 3i5p_A Nucleoporin NUP170; hel 23.2 4.9E+02 0.017 24.8 10.4 67 435-501 175-246 (525)
345 1mzb_A Ferric uptake regulatio 22.8 1.3E+02 0.0045 22.2 4.9 54 29-83 9-67 (136)
346 2w57_A Ferric uptake regulatio 22.7 2.5E+02 0.0086 21.2 7.3 61 256-317 6-67 (150)
347 3ctd_A Putative ATPase, AAA fa 22.5 3.1E+02 0.011 22.2 7.1 64 73-136 36-107 (213)
348 4ets_A Ferric uptake regulatio 22.4 1.7E+02 0.0057 22.6 5.5 48 71-118 34-83 (162)
349 1ya0_A SMG-7 transcript varian 22.1 3.9E+02 0.013 25.3 9.0 68 378-449 161-231 (497)
350 3hra_A Ankyrin repeat family p 21.7 2.1E+02 0.0073 22.3 6.5 77 11-92 10-92 (201)
351 2ijq_A Hypothetical protein; s 21.5 2.8E+02 0.0097 21.4 8.0 54 448-501 42-104 (161)
352 2p1h_A APAF-1, apoptotic prote 21.5 2E+02 0.0067 19.5 7.6 37 315-351 49-85 (94)
353 1wdy_A 2-5A-dependent ribonucl 21.3 3.5E+02 0.012 22.4 15.5 144 7-164 6-170 (285)
354 2dna_A Unnamed protein product 20.9 1.7E+02 0.0059 18.6 4.4 39 422-463 19-57 (67)
355 3mwm_A ZUR, putative metal upt 20.4 1.1E+02 0.0038 22.8 4.1 34 120-153 29-62 (139)
356 2nsz_A Programmed cell death p 20.4 2.6E+02 0.0088 20.5 10.0 66 204-269 10-80 (129)
357 4b4t_O 26S proteasome regulato 20.3 4.4E+02 0.015 23.9 8.8 120 375-495 45-192 (393)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-41 Score=342.05 Aligned_cols=446 Identities=12% Similarity=0.014 Sum_probs=377.8
Q ss_pred HHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHH
Q 048766 48 YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127 (525)
Q Consensus 48 ~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 127 (525)
+.+.|....+...+..++.+++..|+.++..+.+.|++++|..+|++|.+ ..|+..++..++.+|.+.|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 44567777778888888778888999999999999999999999999985 4678888999999999999999999999
Q ss_pred HHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCC-------------------ChhhHHHHHHHHHhCCChHH
Q 048766 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-------------------DIISWNSVIAASARNGNLEL 188 (525)
Q Consensus 128 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~ 188 (525)
+.+.. .+++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 98765 3678889999999999999999999999965443 36789999999999999999
Q ss_pred HHHHHhcC--CCCC-cchHHH--------------------------------------HHHHHHhcCChHHHHHHHhcC
Q 048766 189 AFGFLHRL--PNPD-TISYNE--------------------------------------VINGIAQFGDIEDAIMILSSM 227 (525)
Q Consensus 189 a~~~~~~~--~~~~-~~~~~~--------------------------------------l~~~~~~~~~~~~a~~~~~~~ 227 (525)
|.+.|+++ ..|+ ...+.. ++..|.+.|++++|.++|+++
T Consensus 219 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 219 AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 99999998 2332 223222 244566789999999999999
Q ss_pred CC--CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHH
Q 048766 228 PS--PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305 (525)
Q Consensus 228 ~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 305 (525)
.+ ++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+.. +.+..++
T Consensus 299 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 376 (597)
T 2xpi_A 299 NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTW 376 (597)
T ss_dssp TTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHH
T ss_pred hcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHH
Confidence 87 888999999999999999999999999999765 4477889999999999999999999999999765 6678899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCC
Q 048766 306 SALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382 (525)
Q Consensus 306 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 382 (525)
..++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+.
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHc
Confidence 999999999999999999999885 4567899999999999999999999999999843 34788999999999999
Q ss_pred CCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-------CCCCc--hhHHHHHHHHHhcCCC
Q 048766 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-------GFGSY--GVVWRALLSASGACSD 453 (525)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~~~ 453 (525)
|+ +++|.++|+++.+. .+.++.+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|+
T Consensus 455 g~-~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 455 GN-ILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp TC-HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred CC-HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99 99999999999864 2446889999999999999999999999987 44677 6789999999999999
Q ss_pred hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
+++|++.++++++.+|+++.+|..++.+|.+.|++++|.++++++.+..+.
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999987653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-41 Score=339.81 Aligned_cols=475 Identities=9% Similarity=-0.041 Sum_probs=395.3
Q ss_pred ccchHHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCC--CCCcccHHHHHHHH
Q 048766 2 NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP--QPSVVSWNSLISGY 79 (525)
Q Consensus 2 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~ll~~~ 79 (525)
++..|+.++..+.+.|++++|..+|+.+.+. .|+..++..++..|.+.|++++|+.+|+.+. .++..+++.++.+|
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 5567888899999999999999999988855 4566788888999999999999999998884 47888889999999
Q ss_pred HhcCChHHHHHHHHHHHh-c--------------CCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhH
Q 048766 80 VQSGKYRKALNLFVELER-S--------------EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144 (525)
Q Consensus 80 ~~~~~~~~A~~~~~~m~~-~--------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 144 (525)
.+.|++++|.++|+++.. . +.+++..+|+.++.++.+.|++++|.+.|+++.+.+ +.+...+..
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 239 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQ 239 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHH
Confidence 999999999998884321 1 223357788888889999999999999999888865 334555565
Q ss_pred HHHHHHhcCCHHHHHH--H-HhhccCC----ChhhHHHHHHHHHhCCChHHHHHHHhcCCC--CCcchHHHHHHHHHhcC
Q 048766 145 LIDMYGKCGSVEDAIG--V-FGEMIDK----DIISWNSVIAASARNGNLELAFGFLHRLPN--PDTISYNEVINGIAQFG 215 (525)
Q Consensus 145 l~~~~~~~g~~~~a~~--~-~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~ 215 (525)
+...+...+..+.+.. + +..+... ....|+.++..|.+.|++++|.++|+++.. ++..+++.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 6555443333222211 1 2222222 233456667788899999999999999955 78899999999999999
Q ss_pred ChHHHHHHHhcCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHH
Q 048766 216 DIEDAIMILSSMP---SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292 (525)
Q Consensus 216 ~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 292 (525)
++++|..+|+++. ..+..+|..++.++.+.|++++|..+++++... .+.+..++..++..|.+.|++++|..+|+.
T Consensus 320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999886 356778999999999999999999999999865 356788999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH
Q 048766 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369 (525)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 369 (525)
+.+.. +.+..++..++.+|.+.|++++|.++|+++. +.+..+|..++.+|.+.|++++|+++|+++.+.. +.+.
T Consensus 399 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 475 (597)
T 2xpi_A 399 SSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDP 475 (597)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCh
Confidence 99875 5578899999999999999999999999886 4577899999999999999999999999999843 3468
Q ss_pred hHHHHHHHHHcCCCCCcchHHHHHHHhhhhh---CCCCC--hhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHH
Q 048766 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDY---GIKPT--VEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWR 442 (525)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~ 442 (525)
.+|..++..+.+.|+ +++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ .. +.+..+|.
T Consensus 476 ~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 476 LLLNELGVVAFNKSD-MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 899999999999999 999999999997643 44676 789999999999999999999999987 33 34688999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh
Q 048766 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484 (525)
Q Consensus 443 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 484 (525)
.++..|.+.|++++|.+.++++++.+|+++.++..++.+|..
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=9.3e-29 Score=234.91 Aligned_cols=371 Identities=13% Similarity=0.094 Sum_probs=282.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCH
Q 048766 76 ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155 (525)
Q Consensus 76 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 155 (525)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 455667788888888888877642 2334555566666777788888888887777654 45667788888888888888
Q ss_pred HHHHHHHhhccC--C-ChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC--CC
Q 048766 156 EDAIGVFGEMID--K-DIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP--SP 230 (525)
Q Consensus 156 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~ 230 (525)
++|...|+++.+ | +..+|..+..++.+.|++++|...|+++ . .|
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------------------l~~~p 132 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA-------------------------------LQYNP 132 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH-------------------------------HHHCT
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------------------HHhCC
Confidence 888888877743 2 2334555555555555555555555443 2 12
Q ss_pred -CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHH
Q 048766 231 -NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309 (525)
Q Consensus 231 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 309 (525)
+...+..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|...++++.+.+ +.+...+..+.
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 210 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLG 210 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 23345566667777777777777777777652 3356677777777788888888888888877765 45567788888
Q ss_pred HHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCC
Q 048766 310 DMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIP 385 (525)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 385 (525)
..+...|++++|...+++.. +.+..++..++..+...|++++|++.|+++.+ ..| +..++..+...+...|+
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~- 286 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGS- 286 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSC-
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCC-
Confidence 88888999999988888775 34577888899999999999999999999988 555 46788888899999998
Q ss_pred cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAE 463 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 463 (525)
+++|.+.++++.+. .+.+...+..++..+.+.|++++|...++++ ...|+ ...+..++..+.+.|++++|+..+++
T Consensus 287 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 287 VAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999864 3456788999999999999999999999987 44444 67888899999999999999999999
Q ss_pred HHhhcCCChhHHHHHHHHHhhccC
Q 048766 464 VIKLEGDSDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 464 ~~~~~p~~~~~~~~l~~~~~~~g~ 487 (525)
+++..|+++.++..++.++...|+
T Consensus 365 a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 365 AIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=8e-28 Score=228.44 Aligned_cols=352 Identities=12% Similarity=0.073 Sum_probs=279.7
Q ss_pred HHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHH
Q 048766 113 ACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF 192 (525)
Q Consensus 113 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 192 (525)
.+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+.
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~------------------------ 62 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ------------------------ 62 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------------
Confidence 3444555555555555555442 223344444445555555555555555444221
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC--CC-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHH
Q 048766 193 LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP--SP-NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269 (525)
Q Consensus 193 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 269 (525)
.+.+..++..+...+.+.|++++|...|+++. .| +..+|..+..++.+.|++++|.+.|+++.+.+ +.+...
T Consensus 63 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 137 (388)
T 1w3b_A 63 ----NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCV 137 (388)
T ss_dssp ----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHH
T ss_pred ----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 22344556666666666666666666666654 23 34568899999999999999999999998763 334556
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhc
Q 048766 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARN 346 (525)
Q Consensus 270 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 346 (525)
+..+...+...|++++|...+..+.+.. +.+..++..+...+.+.|++++|...|+++. +.+...|..+...+...
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 216 (388)
T 1w3b_A 138 RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 7778888899999999999999999876 5567889999999999999999999999986 44567899999999999
Q ss_pred CChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHH
Q 048766 347 GDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWR 424 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 424 (525)
|++++|+..+++..+ ..| +..++..+...+...|+ +++|.+.++++.+. .| ++..+..++..|.+.|++++
T Consensus 217 ~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 217 RIFDRAVAAYLRALS---LSPNHAVVHGNLACVYYEQGL-IDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp TCTTHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHH
T ss_pred CCHHHHHHHHHHHHh---hCcCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999998 566 47888899999999999 99999999999853 44 57789999999999999999
Q ss_pred HHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 425 AQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 425 A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
|.+.++++ ..+.+..++..++..+...|++++|+..++++++..|+++.++..++.++.+.|++++|...++++.+..
T Consensus 290 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999987 3345678899999999999999999999999999999999999999999999999999999999998754
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.3e-27 Score=230.38 Aligned_cols=186 Identities=14% Similarity=0.137 Sum_probs=143.4
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCC---------hHHHHHHHHHHHHcccCCCcch
Q 048766 71 SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS---------LQLGMAIHSKIVKYSLERGVVI 141 (525)
Q Consensus 71 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 141 (525)
.++.+|.+|++.|++++|+++|++|.+.|++||..||+.||.+|++.+. ++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4667777778888888888888888888888888888888888776543 5677888888888888888888
Q ss_pred hhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 048766 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221 (525)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 221 (525)
|++||.+|++.|++++|.++|++|.+.+.
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~--------------------------------------------------- 136 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGI--------------------------------------------------- 136 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTC---------------------------------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------------------------------------------
Confidence 88888888888888888888877755433
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCch
Q 048766 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301 (525)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 301 (525)
.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+.++|.+++++|.+.+..|+
T Consensus 137 -------~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 137 -------QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp -------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred -------CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 3666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHc
Q 048766 302 IVVASALLDMYSK 314 (525)
Q Consensus 302 ~~~~~~l~~~~~~ 314 (525)
..+|+.++..|..
T Consensus 210 ~~T~~~l~~~F~s 222 (501)
T 4g26_A 210 KSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777764
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.6e-25 Score=219.54 Aligned_cols=264 Identities=9% Similarity=-0.070 Sum_probs=218.6
Q ss_pred ccHHHHHHHHHh---cCChhHHHHHHHHHhh-----CCCC--------CCHHHHHHHHHHhccccchHHHHHHHHHHHHh
Q 048766 233 SSWNSILTGYVN---RNRVPEALHLFGEMQS-----KDVP--------MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296 (525)
Q Consensus 233 ~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 296 (525)
..+......+.. .|++++|..+|+++.. .... .+..++..+...+...|++++|...++.+.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 266 (514)
T 2gw1_A 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266 (514)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 344444555554 8899999999999887 3112 23456777888889999999999999999888
Q ss_pred CCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHH
Q 048766 297 GLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTF 372 (525)
Q Consensus 297 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~ 372 (525)
... ...+..+..++...|++++|...++.+. +.+...+..+...+...|++++|+..++++.+ ..| +...+
T Consensus 267 ~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~ 341 (514)
T 2gw1_A 267 FPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE---LDPENIFPY 341 (514)
T ss_dssp CCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH---TCSSCSHHH
T ss_pred Ccc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hChhhHHHH
Confidence 744 7888889999999999999999999886 34567888899999999999999999999988 444 46778
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh----CCCCc----hhHHHHH
Q 048766 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSY----GVVWRAL 444 (525)
Q Consensus 373 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l 444 (525)
..+...+...|+ +++|..+++.+.+. .+.+...+..++..|.+.|++++|...++++ +..+. ...+..+
T Consensus 342 ~~l~~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 342 IQLACLAYRENK-FDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp HHHHHHTTTTTC-HHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 888889999999 99999999998864 2345778889999999999999999999886 22222 3378888
Q ss_pred HHHHhc---CCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 445 LSASGA---CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 445 ~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
+..+.. .|++++|+..++++++..|+++.++..++.++...|++++|...++++.+..+.
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 999999 999999999999999999999999999999999999999999999999887653
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=2e-25 Score=221.68 Aligned_cols=423 Identities=11% Similarity=0.036 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 048766 38 VFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC 114 (525)
Q Consensus 38 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 114 (525)
...+..+...+.+.|++++|++.|+++.. .++..|..+..++...|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 34455566666666666666666665543 344556666666666666666666666666543 23455566666666
Q ss_pred cccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCC------ChhhHHHHHHHHHhCCChHH
Q 048766 115 GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK------DIISWNSVIAASARNGNLEL 188 (525)
Q Consensus 115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~ 188 (525)
...|++++|...++ .... .|+ .....+..+...+....|...++.+... ........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 66666666666664 2221 111 1111223333444455566666655432 11122333444555555555
Q ss_pred HHHHHhcCCCCCcc---hHHHHHHHHHh--------cCChHHHHHHHhcCCC--CC--------cccHHHHHHHHHhcCC
Q 048766 189 AFGFLHRLPNPDTI---SYNEVINGIAQ--------FGDIEDAIMILSSMPS--PN--------SSSWNSILTGYVNRNR 247 (525)
Q Consensus 189 a~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~~~~--~~--------~~~~~~l~~~~~~~~~ 247 (525)
+...+......+.. ....+...+.. .|++++|..+|+++.+ |+ ..++..+...+...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 55555555333322 22222222111 1244555555554442 11 1123344444555555
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 048766 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327 (525)
Q Consensus 248 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 327 (525)
+++|...|+++... .|+...+..+...+...|++++|...+..+.+.. +.+..++..+..++...|++++|...+++
T Consensus 259 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 259 LLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 55555555555543 2334445555555555555555555555555443 23344444555555555555555555554
Q ss_pred cc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCC
Q 048766 328 LC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403 (525)
Q Consensus 328 ~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 403 (525)
+. +.+...|..+...+...|++++|+..++++.+ ..| +...+..+...+...|+ +++|.+.++++.+...-.
T Consensus 336 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 336 AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL---KFPTLPEVPTFFAEILTDRGD-FDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcCCcc
Confidence 43 22334444455555555555555555555544 222 23344444444555554 555555555544321101
Q ss_pred CC----hhHHHHHHHHHhcc----------CChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 048766 404 PT----VEHCCSMIRLMGQK----------GEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 404 ~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
++ ...+..++..|.+. |++++|...++++ . .+.+...+..++..+...|++++|.+.+++++++
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 10 11122223334444 5555555555443 1 1122344444444555555555555555555555
Q ss_pred cCCChh
Q 048766 468 EGDSDY 473 (525)
Q Consensus 468 ~p~~~~ 473 (525)
.|+++.
T Consensus 492 ~~~~~~ 497 (537)
T 3fp2_A 492 ARTMDE 497 (537)
T ss_dssp C--CHH
T ss_pred CCCcHH
Confidence 544433
No 8
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=7.2e-27 Score=225.27 Aligned_cols=184 Identities=16% Similarity=0.202 Sum_probs=173.6
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcccc---------chHHHHHHHHHHHHhCCCchHH
Q 048766 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS---------ALTWGMLIHSCVIKQGLDASIV 303 (525)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~ 303 (525)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|+..+ .++.|..+|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3578889999999999999999999999999999999999999998654 4788999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcc----CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHH
Q 048766 304 VASALLDMYSKCGQVEIADSMFRSLC----RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379 (525)
Q Consensus 304 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 379 (525)
+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.| +.||..||+.++.+|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G-~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE-VVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH
Confidence 99999999999999999999999996 6899999999999999999999999999999999 999999999999999
Q ss_pred cCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhcc
Q 048766 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 419 (525)
++.|+ .++|.+++++|.+. +..|+..||+.++..|...
T Consensus 186 ~~~g~-~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKN-ADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTC-HHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hhCCC-HHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999 99999999999887 9999999999999988753
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.3e-25 Score=216.34 Aligned_cols=443 Identities=12% Similarity=-0.044 Sum_probs=286.3
Q ss_pred hHHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHh
Q 048766 5 VLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQ 81 (525)
Q Consensus 5 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~ 81 (525)
.+......+.+.|++++|...|..+++.+ |++..+..+...|.+.|++++|++.|+++.+ .+...|..+..++..
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 44555566666677777777777776664 4666666666667667777777766665543 234456666666666
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHH---HHHHhcCCHHHH
Q 048766 82 SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI---DMYGKCGSVEDA 158 (525)
Q Consensus 82 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a 158 (525)
.|++++|...|+++.+.+ +++......++..+........+.+.+..+...+..|+......-. ...........+
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 667777776666666643 2333333334333333222222222222222111111111000000 000000001111
Q ss_pred HHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCC-CCCcchHHHHHHHHHh---cCChHHHHHHHhcCCC-----
Q 048766 159 IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP-NPDTISYNEVINGIAQ---FGDIEDAIMILSSMPS----- 229 (525)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----- 229 (525)
...+..... .... ..+. +.+...+......+.. .|++++|...|+++.+
T Consensus 165 ~~~~~~~~~-------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 222 (514)
T 2gw1_A 165 ASFFGIFKP-------------------ELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ 222 (514)
T ss_dssp HHHHTTSCC-------------------CCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCH-------------------HHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhh
Confidence 111111100 0000 0000 1112223333333332 5566666665554432
Q ss_pred ------------CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhC
Q 048766 230 ------------PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297 (525)
Q Consensus 230 ------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 297 (525)
.+..++..+...+...|++++|...|+++...+ |+...+..+..++...|++++|...++.+.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 300 (514)
T 2gw1_A 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD 300 (514)
T ss_dssp TTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC
T ss_pred hccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC
Confidence 123467778888899999999999999988764 337788888888999999999999999988775
Q ss_pred CCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHH
Q 048766 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFL 373 (525)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~ 373 (525)
+.+..++..+..++...|++++|...++.+. +.+...+..+...+...|++++|+..++++.+. .| +...+.
T Consensus 301 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~ 376 (514)
T 2gw1_A 301 -SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPN 376 (514)
T ss_dssp -TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHH
Confidence 4567788889999999999999999999875 446678888999999999999999999999884 44 567788
Q ss_pred HHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhc---cCChHHHHHHHHHh-CC-CCchhHHHHH
Q 048766 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQ---KGEVWRAQRMIREL-GF-GSYGVVWRAL 444 (525)
Q Consensus 374 ~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~-~~~~~~~~~l 444 (525)
.+...+...|+ +++|.+.++++.+...-.++ ...+..++..|.. .|++++|...++++ .. +.+...+..+
T Consensus 377 ~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 455 (514)
T 2gw1_A 377 FFAEILTDKND-FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 88899999999 99999999998765322232 3488999999999 99999999999987 22 3456788889
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
+..+...|++++|...++++++..|+++..+..+.
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 99999999999999999999999998888877663
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.1e-23 Score=204.30 Aligned_cols=331 Identities=13% Similarity=0.052 Sum_probs=239.5
Q ss_pred CCcchhhHHHHHHHhcCCHHHHHHHHhhccC---CChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 048766 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMID---KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQ 213 (525)
Q Consensus 137 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 213 (525)
.+...+..+...+.+.|++++|..+|+++.+ .+..+|..+..++...|++++|...|+++...
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------- 89 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-------------- 89 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 3455666666677777777777777766643 24445555555555555555555555554100
Q ss_pred cCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----HHHHHH------------HHHh
Q 048766 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE----YTFSTM------------LSGI 277 (525)
Q Consensus 214 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l------------~~~~ 277 (525)
...+...+..++.+|.+.|++++|...|+++... .|+. ..+..+ ...+
T Consensus 90 --------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 153 (450)
T 2y4t_A 90 --------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNA 153 (450)
T ss_dssp --------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123345556666666666666666666666654 2332 333333 3346
Q ss_pred ccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHH
Q 048766 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIE 354 (525)
Q Consensus 278 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 354 (525)
...|++++|...++.+.+.. +.+..++..++.+|.+.|++++|.+.|+.+. +.+..+|..++..|...|++++|+.
T Consensus 154 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 232 (450)
T 2y4t_A 154 FGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 77888888888888888765 5567788888899999999999999998875 4577889999999999999999999
Q ss_pred HHHHHhhCCCCCCCH-hHHHHH------------HHHHcCCCCCcchHHHHHHHhhhhhCCCCC-----hhHHHHHHHHH
Q 048766 355 LFEQLKTVRDLQPDS-VTFLNV------------LAACSHTDIPFDKVSEYFESMTKDYGIKPT-----VEHCCSMIRLM 416 (525)
Q Consensus 355 ~~~~~~~~~~~~p~~-~~~~~l------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~ 416 (525)
.|+++.+ ..|+. ..+..+ ...+...|+ +++|.++|+++.+. .|+ ...+..++..+
T Consensus 233 ~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 233 EVRECLK---LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR-YTDATSKYESVMKT---EPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHH
Confidence 9999987 55653 334333 678888898 99999999999864 454 44788899999
Q ss_pred hccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHH------------H
Q 048766 417 GQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNL------------Y 482 (525)
Q Consensus 417 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~ 482 (525)
.+.|++++|+..++++ ...| +...|..++.+|...|++++|+..++++++..|+++.++..++.+ |
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y 385 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY 385 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSG
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHH
Confidence 9999999999999987 3334 578899999999999999999999999999999999999999844 5
Q ss_pred hhcc-----ChhHHHHHHHH-HHHcCCcc
Q 048766 483 TSHG-----NWDVASVMRNF-MRERGLRK 505 (525)
Q Consensus 483 ~~~g-----~~~~A~~~~~~-~~~~~~~~ 505 (525)
...| +.+++.+.+++ ..+..+..
T Consensus 386 ~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 386 KILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp GGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 5555 56677888876 44444433
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.7e-23 Score=207.78 Aligned_cols=424 Identities=9% Similarity=0.016 Sum_probs=332.3
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHH
Q 048766 69 VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148 (525)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (525)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++.+.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567888899999999999999999999864 4578889999999999999999999999999875 5577889999999
Q ss_pred HHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCC------CCcchHHHHHHHHHhcCChHHHHH
Q 048766 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN------PDTISYNEVINGIAQFGDIEDAIM 222 (525)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~ 222 (525)
+...|++++|...|+.+ ..+.......+..+...+...+|...++++.. +........+..+....+.+.+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999999744 33333333344555666667888888888722 122223455666777888888888
Q ss_pred HHhcCCCCCcc---cHHHHHHHHHh--------cCChhHHHHHHHHHhhCCCCCCH-------HHHHHHHHHhccccchH
Q 048766 223 ILSSMPSPNSS---SWNSILTGYVN--------RNRVPEALHLFGEMQSKDVPMDE-------YTFSTMLSGIAGLSALT 284 (525)
Q Consensus 223 ~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~~~~~ 284 (525)
.+......+.. ....+...+.. .|++++|..+|+++.+.. +.+. .++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 88777654443 33333333322 258899999999998763 2232 34666677888899999
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361 (525)
Q Consensus 285 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (525)
+|...+..+.+... +...+..+...+...|+++.|...++.+. +.+..+|..+...+...|++++|+..++++.+
T Consensus 261 ~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 261 DAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999998763 37788889999999999999999999886 45678899999999999999999999999998
Q ss_pred CCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh----CCCC
Q 048766 362 VRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL----GFGS 436 (525)
Q Consensus 362 ~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~ 436 (525)
..| +...+..+...+...|+ +++|.++++++.+. .+.+...+..++..|...|++++|...++++ +..+
T Consensus 339 ---~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 339 ---LNPENVYPYIQLACLLYKQGK-FTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp ---HCTTCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred ---hCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 445 46788889999999999 99999999999864 2445778999999999999999999999986 1111
Q ss_pred c----hhHHHHHHHHHhcC----------CChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 437 Y----GVVWRALLSASGAC----------SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 437 ~----~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
. ...+......+... |++++|+..++++++..|+++.++..++.+|...|++++|...++++.+..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1 12244455667777 999999999999999999999999999999999999999999999998876
Q ss_pred Cc
Q 048766 503 LR 504 (525)
Q Consensus 503 ~~ 504 (525)
+.
T Consensus 493 ~~ 494 (537)
T 3fp2_A 493 RT 494 (537)
T ss_dssp --
T ss_pred CC
Confidence 54
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1e-22 Score=197.42 Aligned_cols=364 Identities=9% Similarity=0.006 Sum_probs=217.7
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHH
Q 048766 69 VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148 (525)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (525)
...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.+.+ +.+..++..+..+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 3456666666777777777777777766542 3356667777777777777777777777777664 3445667777777
Q ss_pred HHhcCCHHHHHHHHhhccCCCh------hhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 048766 149 YGKCGSVEDAIGVFGEMIDKDI------ISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIM 222 (525)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 222 (525)
|...|++++|...|+++.+.++ ..+..++..+... .
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~------------------- 145 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------R------------------- 145 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------H-------------------
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------H-------------------
Confidence 7777777777777777654322 3333333322110 1
Q ss_pred HHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchH
Q 048766 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302 (525)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 302 (525)
+..+...+...|++++|+..|+++.... +.+...+..+..++...|++++|...+..+.+.. +.+.
T Consensus 146 ------------~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 211 (450)
T 2y4t_A 146 ------------LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNT 211 (450)
T ss_dssp ------------HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCH
T ss_pred ------------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 1122233344444444444444444331 2234444444444444555555555544444433 3334
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHH------------HHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNA------------MITGYARNGDLTKVIELFEQLKTVRDLQP 367 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 367 (525)
.++..++.+|...|++++|...|+.+. +.+...+.. ++..+...|++++|+..|+++.+ ..|
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p 288 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEP 288 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCC
Confidence 445555555555555555555555543 122223322 36777888888888888888887 455
Q ss_pred C-----HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhH
Q 048766 368 D-----SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVV 440 (525)
Q Consensus 368 ~-----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~ 440 (525)
+ ...+..+...+...|+ +++|.+.++++.+. .+.+...|..++.+|...|++++|...++++ ...|+ ...
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEK-PVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 5 3466777778888888 88888888887753 1335778888888888888888888888886 44454 444
Q ss_pred HHHHH------------HHHhcCC-----ChHHHHHHHHH-HHhhcCCCh----------hHHHHHHHHHhhccChhHHH
Q 048766 441 WRALL------------SASGACS-----DLDVARISAAE-VIKLEGDSD----------YVYVMLCNLYTSHGNWDVAS 492 (525)
Q Consensus 441 ~~~l~------------~~~~~~~-----~~~~A~~~~~~-~~~~~p~~~----------~~~~~l~~~~~~~g~~~~A~ 492 (525)
+..+. ..|...| +.+++.+.+++ +++..|++. ..+..+..+|...|+.+.+.
T Consensus 366 ~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 366 REGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 44444 2343344 67788888887 677666532 24556667777666665543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=7.6e-21 Score=178.12 Aligned_cols=301 Identities=12% Similarity=0.048 Sum_probs=171.0
Q ss_pred HHHHHHHhCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcccHHHHHHHHHhcCCh
Q 048766 175 SVIAASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS---PNSSSWNSILTGYVNRNRV 248 (525)
Q Consensus 175 ~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 248 (525)
.+...+...|++++|+..|+++ .+.+...+..+...+...|++++|...|+++.+ .+...+..+..++...|++
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCCh
Confidence 3333444444444444444433 122333444455555555555555555554431 2344566666677777777
Q ss_pred hHHHHHHHHHhhCCCCC----CHHHHHHH------------HHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 048766 249 PEALHLFGEMQSKDVPM----DEYTFSTM------------LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312 (525)
Q Consensus 249 ~~a~~~~~~m~~~~~~~----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (525)
++|...|+++... .| +...+..+ ...+...|++++|...++.+.+.. +.+..++..+..++
T Consensus 88 ~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 88 DEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECF 164 (359)
T ss_dssp HHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 7777777776654 33 22222222 355666677777777777666654 44556666677777
Q ss_pred HcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHH------------HHH
Q 048766 313 SKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFL------------NVL 376 (525)
Q Consensus 313 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~------------~l~ 376 (525)
...|++++|...++.+. +.+..++..+...+...|++++|...+++..+ ..|+ ...+. .+.
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCccchHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777664 33455666777777777777777777777766 3343 22221 123
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCC-h----hHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHh
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPT-V----EHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASG 449 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 449 (525)
..+...|+ +++|.+.++++.+. .|+ + ..+..++..|...|++++|...+++. ...| +...+..++..+.
T Consensus 242 ~~~~~~~~-~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 242 EELIRDGR-YTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHcCC-HHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44555666 66666666666543 232 1 22334556666666666666666665 2122 4555666666666
Q ss_pred cCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 450 ACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 450 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
..|++++|...++++++.+|+++.++..+..+....
T Consensus 318 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 666666666666666666666666666665555443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.8e-20 Score=175.53 Aligned_cols=295 Identities=10% Similarity=-0.029 Sum_probs=249.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHh
Q 048766 201 TISYNEVINGIAQFGDIEDAIMILSSMPS---PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277 (525)
Q Consensus 201 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 277 (525)
...+..+...+...|++++|...|+++.+ .+..++..+..++...|++++|...|+++.+.. +.+...+..+..++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 45677888999999999999999998763 456788999999999999999999999998763 44678899999999
Q ss_pred ccccchHHHHHHHHHHHHhCCC---chHHHHHHH------------HHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHH
Q 048766 278 AGLSALTWGMLIHSCVIKQGLD---ASIVVASAL------------LDMYSKCGQVEIADSMFRSLC---RKNLVTWNAM 339 (525)
Q Consensus 278 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 339 (525)
...|++++|...++.+.+.. + .+...+..+ ...+...|++++|.+.++.+. +.+...+..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999998875 3 355555555 578899999999999999986 4567789999
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHH--------
Q 048766 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCC-------- 410 (525)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~-------- 410 (525)
...+...|++++|+..++++.+.. +.+...+..+...+...|+ +++|.+.++.+.+. .|+ ...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGD-HELSLSEVRECLKL---DQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh---CccchHHHHHHHHHHHH
Confidence 999999999999999999999842 3367888899999999999 99999999999864 343 33332
Q ss_pred ----HHHHHHhccCChHHHHHHHHHh-CCCCc-h----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 411 ----SMIRLMGQKGEVWRAQRMIREL-GFGSY-G----VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 411 ----~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
.++..+.+.|++++|...++++ ...|+ . ..+..++..+...|++++|+..++++++..|+++.++..++.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3367789999999999999987 22233 2 235567888999999999999999999999999999999999
Q ss_pred HHhhccChhHHHHHHHHHHHcCC
Q 048766 481 LYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
++...|++++|...++++.+..+
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999988754
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=1.3e-18 Score=170.08 Aligned_cols=351 Identities=11% Similarity=-0.031 Sum_probs=237.7
Q ss_pred cCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHh----cCCHHHHHHHHhhccCC-ChhhHHHHHHHHHh----CCChH
Q 048766 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGK----CGSVEDAIGVFGEMIDK-DIISWNSVIAASAR----NGNLE 187 (525)
Q Consensus 117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~ 187 (525)
.+++++|...|+...+.| +...+..|...|.. .++.++|...|++..+. +...+..+...|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 344444444444444432 23344444444444 44455555444444332 33344444444444 44555
Q ss_pred HHHHHHhcC-CCCCcchHHHHHHHHHh----cCChHHHHHHHhcCCC-CCcccHHHHHHHHHh----cCChhHHHHHHHH
Q 048766 188 LAFGFLHRL-PNPDTISYNEVINGIAQ----FGDIEDAIMILSSMPS-PNSSSWNSILTGYVN----RNRVPEALHLFGE 257 (525)
Q Consensus 188 ~a~~~~~~~-~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 257 (525)
+|...|++. ...+...+..+...|.. .++.++|...|++..+ .+...+..+...|.. .+++++|..+|++
T Consensus 133 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 212 (490)
T 2xm6_A 133 ESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRK 212 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 555555544 12233444555555554 5566666666665442 455566777777776 7888888888888
Q ss_pred HhhCCCCCCHHHHHHHHHHhcc----ccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc----CCCHHHHHHHHHhcc
Q 048766 258 MQSKDVPMDEYTFSTMLSGIAG----LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK----CGQVEIADSMFRSLC 329 (525)
Q Consensus 258 m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 329 (525)
..+.| +...+..+...+.. .+++++|..+++...+.+ +...+..+..+|.. .++.++|...|+...
T Consensus 213 a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~ 286 (490)
T 2xm6_A 213 SATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA 286 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Confidence 87764 45566666666664 778888888888887765 34455667777777 889999999999887
Q ss_pred C-CCHhHHHHHHHHHHhc-----CChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCC---CCcchHHHHHHHhhhhh
Q 048766 330 R-KNLVTWNAMITGYARN-----GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD---IPFDKVSEYFESMTKDY 400 (525)
Q Consensus 330 ~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~~a~~~~~~~~~~~ 400 (525)
+ .+...+..+...|... +++++|+.+|++..+.+ +...+..+...+...| + +++|.++|++..+.
T Consensus 287 ~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~~g~~~~-~~~A~~~~~~a~~~- 360 (490)
T 2xm6_A 287 EQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG----DATAQANLGAIYFRLGSEEE-HKKAVEWFRKAAAK- 360 (490)
T ss_dssp TTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCHHH-HHHHHHHHHHHHHT-
T ss_pred HcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHC-
Confidence 4 4666788888888887 89999999999998854 3345556666665545 5 88999999998763
Q ss_pred CCCCChhHHHHHHHHHhc----cCChHHHHHHHHHhCCCCchhHHHHHHHHHhc----CCChHHHHHHHHHHHhhcCC--
Q 048766 401 GIKPTVEHCCSMIRLMGQ----KGEVWRAQRMIRELGFGSYGVVWRALLSASGA----CSDLDVARISAAEVIKLEGD-- 470 (525)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~-- 470 (525)
.++..+..+...|.. .+++++|...+++.-...++..+..+...|.. .+++++|...|+++.+.+|+
T Consensus 361 ---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 437 (490)
T 2xm6_A 361 ---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF 437 (490)
T ss_dssp ---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred ---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 467788889999988 89999999999987223457778888888887 89999999999999999954
Q ss_pred -ChhHHHHHHHHHhhc
Q 048766 471 -SDYVYVMLCNLYTSH 485 (525)
Q Consensus 471 -~~~~~~~l~~~~~~~ 485 (525)
++.+...++.++...
T Consensus 438 ~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 438 GTENRNITEKKLTAKQ 453 (490)
T ss_dssp HHHHHHHHHTTSCHHH
T ss_pred CCHHHHHHHHhcCHhH
Confidence 777788887776653
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.8e-19 Score=166.63 Aligned_cols=283 Identities=10% Similarity=-0.003 Sum_probs=182.1
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHh
Q 048766 201 TISYNEVINGIAQFGDIEDAIMILSSMPS---PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277 (525)
Q Consensus 201 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 277 (525)
...+..++..+...|++++|..+|+++.+ .+...+..++.++...|++++|..+++++.+.. +.+...+..+...+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 33444444555555555555555554431 233345555566666666666666666666542 23445555666666
Q ss_pred cccc-chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHH
Q 048766 278 AGLS-ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVI 353 (525)
Q Consensus 278 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 353 (525)
...| ++++|...++.+.+.. +.+...+..+..++...|++++|...++.+. +.+...+..+...+...|++++|+
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 6666 6666666666666554 3345556667777777777777777777665 233456666777777777777777
Q ss_pred HHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhC-------CCCChhHHHHHHHHHhccCChHHH
Q 048766 354 ELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG-------IKPTVEHCCSMIRLMGQKGEVWRA 425 (525)
Q Consensus 354 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A 425 (525)
+.++++.+ ..| +...+..+...+...|+ +++|...++++.+... .+.....+..++..|.+.|++++|
T Consensus 180 ~~~~~al~---~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 180 RFFSQALS---IAPEDPFVMHEVGVVAFQNGE-WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHT---TCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHH---hCCCChHHHHHHHHHHHHccc-HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 77777777 334 45666777777777777 7777777777765321 123356777788888888888888
Q ss_pred HHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH-hhccChh
Q 048766 426 QRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY-TSHGNWD 489 (525)
Q Consensus 426 ~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 489 (525)
...+++. . .+.+...+..++..+...|++++|.+.++++++..|+++.++..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 8888776 2 2234567777777888888888888888888888888888888888877 4455543
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=5.6e-20 Score=173.02 Aligned_cols=278 Identities=12% Similarity=0.033 Sum_probs=215.5
Q ss_pred cCChHHHHH-HHhcCCC-----C--CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHH
Q 048766 214 FGDIEDAIM-ILSSMPS-----P--NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285 (525)
Q Consensus 214 ~~~~~~a~~-~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 285 (525)
.|++++|.. .|++..+ | +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 456666666 6654442 1 34567777888888888888888888887763 4466777788888888888888
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC--C-CHhHHHH---------------HHHHHHhcC
Q 048766 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR--K-NLVTWNA---------------MITGYARNG 347 (525)
Q Consensus 286 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------l~~~~~~~~ 347 (525)
|...++.+.+.. +.+..++..+..+|...|++++|.+.++.+.. | +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 888888888776 55677788888888888888888888887752 2 2222211 133334889
Q ss_pred ChhHHHHHHHHHhhCCCCCCC---HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHH
Q 048766 348 DLTKVIELFEQLKTVRDLQPD---SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424 (525)
Q Consensus 348 ~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 424 (525)
++++|+..++++.+. .|+ ..++..+...+...|+ +++|.+.++++.+. .+.++..+..++..|.+.|++++
T Consensus 196 ~~~~A~~~~~~a~~~---~p~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 196 LFLEVKELFLAAVRL---DPTSIDPDVQCGLGVLFNLSGE-YDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHH---STTSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHh---CcCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999984 454 7888899999999999 99999999999864 23357889999999999999999
Q ss_pred HHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC-----------hhHHHHHHHHHhhccChhHH
Q 048766 425 AQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS-----------DYVYVMLCNLYTSHGNWDVA 491 (525)
Q Consensus 425 A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A 491 (525)
|+..++++ .. +.+...+..++..+.+.|++++|+..++++++..|++ +.+|..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999987 32 3457788999999999999999999999999999887 78999999999999999999
Q ss_pred HHHHHHHH
Q 048766 492 SVMRNFMR 499 (525)
Q Consensus 492 ~~~~~~~~ 499 (525)
..++++..
T Consensus 350 ~~~~~~~l 357 (368)
T 1fch_A 350 GAADARDL 357 (368)
T ss_dssp HHHHTTCH
T ss_pred HHhHHHHH
Confidence 99886443
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=4.5e-18 Score=167.94 Aligned_cols=406 Identities=9% Similarity=0.027 Sum_probs=271.0
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHH
Q 048766 68 SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLID 147 (525)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 147 (525)
+...|..++. +.+.|++++|..+|+++.+. .+-+...|..++..+.+.|+++.|..+|+.+++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5567777777 36778888888888888774 23456677788888888888888888888887753 56666666664
Q ss_pred HH-HhcCCHHHHHH----HHhhccC------CChhhHHHHHHHHHh---------CCChHHHHHHHhcCCC-CCc---ch
Q 048766 148 MY-GKCGSVEDAIG----VFGEMID------KDIISWNSVIAASAR---------NGNLELAFGFLHRLPN-PDT---IS 203 (525)
Q Consensus 148 ~~-~~~g~~~~a~~----~~~~~~~------~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~-~~~---~~ 203 (525)
.. ...|+.+.|.+ +|+.... ++...|...+....+ .|+++.|..+|++... |.. ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 34566655544 5554421 234455555554443 4566666666666522 221 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH------hhCC---CCCCH-------
Q 048766 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM------QSKD---VPMDE------- 267 (525)
Q Consensus 204 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m------~~~~---~~~~~------- 267 (525)
|..........|. ..+..++. .+.+++..|..+++++ .+.. ++|+.
T Consensus 168 ~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 2111111000110 01111110 1234566666666652 2221 34442
Q ss_pred -HHHHHHHHHhcc----ccch----HHHHHHHHHHHHhCCCchHHHHHHHHHHHHc-------CCCHH-------HHHHH
Q 048766 268 -YTFSTMLSGIAG----LSAL----TWGMLIHSCVIKQGLDASIVVASALLDMYSK-------CGQVE-------IADSM 324 (525)
Q Consensus 268 -~~~~~l~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~ 324 (525)
..|...+..... .++. ..+...|+++.... +.+..++..++..+.+ .|+++ .|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 334433322211 1222 36777888888774 5667888888888775 79987 89999
Q ss_pred HHhccC---C-CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH--hHHHHHHHHHcCCCCCcchHHHHHHHhhh
Q 048766 325 FRSLCR---K-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS--VTFLNVLAACSHTDIPFDKVSEYFESMTK 398 (525)
Q Consensus 325 ~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 398 (525)
+++... | +...|..++..+.+.|++++|..+|+++.+ ..|+. ..|..++..+.+.|+ +++|.++|++..+
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKARE 384 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHh
Confidence 998863 3 567899999999999999999999999999 66753 478888888888888 9999999999985
Q ss_pred hhCCCCC-hhHHHHHHHH-HhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChh-
Q 048766 399 DYGIKPT-VEHCCSMIRL-MGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY- 473 (525)
Q Consensus 399 ~~~~~~~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~- 473 (525)
. .|. ...+...+.. +...|++++|..+|++. ...| ++..|..++..+.+.|+.++|..+|++++...|.++.
T Consensus 385 ~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 385 D---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp C---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred c---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 3 343 3333333332 33689999999999986 2233 4778889999999999999999999999998876665
Q ss_pred ---HHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 474 ---VYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 474 ---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.|...+......|+.+.+..+.+++.+..+
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 788888888899999999999999987655
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=2e-19 Score=166.42 Aligned_cols=266 Identities=11% Similarity=0.025 Sum_probs=231.1
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHH
Q 048766 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309 (525)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 309 (525)
.+...+..++..+...|++++|..+|+++.... +.+...+..++.++...|++++|...+..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 566778889999999999999999999998763 4455667778888899999999999999999876 55678888899
Q ss_pred HHHHcCC-CHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCC
Q 048766 310 DMYSKCG-QVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDI 384 (525)
Q Consensus 310 ~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~ 384 (525)
..+...| ++++|.+.|+.+. +.+...|..+...+...|++++|+..++++.+. .| +...+..+...+...|+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL---MKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHhh
Confidence 9999999 9999999999986 345678999999999999999999999999984 44 45667778889999999
Q ss_pred CcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh----CC-------CCchhHHHHHHHHHhcCCC
Q 048766 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL----GF-------GSYGVVWRALLSASGACSD 453 (525)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~-------~~~~~~~~~l~~~~~~~~~ 453 (525)
+++|.+.++++.+. .+.+...+..++..|...|++++|...++++ +. +.....+..++..+...|+
T Consensus 175 -~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 175 -SKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp -HHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999853 2345788999999999999999999999986 11 3335688899999999999
Q ss_pred hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+++|+..++++++..|+++.++..++.++...|++++|...++++.+..+
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999988876543
No 20
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=4.5e-17 Score=166.72 Aligned_cols=400 Identities=12% Similarity=0.083 Sum_probs=252.2
Q ss_pred HHHHHHHhccCchhhhhHHHHHHHHhC--CCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 048766 7 FHLLRASSDLGWDTYCQQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84 (525)
Q Consensus 7 ~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~ 84 (525)
....++|+..|.+.+|.++++.+.-.+ +..+....+.++.+..+. +..+..+..+.....+ ...+...+...|.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNEL 1064 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCC
Confidence 455666777777777777777776332 112344555555555544 3344444444433222 3446666777788
Q ss_pred hHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhh
Q 048766 85 YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGE 164 (525)
Q Consensus 85 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 164 (525)
+++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++...|++++|.+.|.+
T Consensus 1065 yEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 8888888777521 1222233332 556777777777643 3356777788888888888888888765
Q ss_pred ccCCChhhHHHHHHHHHhCCChHHHHHHHhcC--CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHH
Q 048766 165 MIDKDIISWNSVIAASARNGNLELAFGFLHRL--PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGY 242 (525)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 242 (525)
. .|...|..++.++.+.|++++|.+.|... ..+++...+.++.+|++.+++++...+. ..++...|..+...|
T Consensus 1131 A--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1131 A--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRC 1205 (1630)
T ss_pred c--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHH
Confidence 4 56667777888888888888888887665 2233334445777778877777644443 235556666777778
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHH
Q 048766 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322 (525)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 322 (525)
...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..+|..+..+|...|++..|.
T Consensus 1206 e~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHH
Confidence 8888888888888774 36777778888888888887777765 34567777777777788888887
Q ss_pred HHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcC--CCCCcchHHHHHHHhhhh
Q 048766 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSH--TDIPFDKVSEYFESMTKD 399 (525)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~--~~~~~~~a~~~~~~~~~~ 399 (525)
..... ...++..+..++..|.+.|.+++|+.+++.... ..|. ...|.-+...+++ .++ ..++.++|. .+
T Consensus 1271 ~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~---LeraH~gmftELaiLyaKy~pek-lmEhlk~f~---~r 1342 (1630)
T 1xi4_A 1271 MCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTELAILYSKFKPQK-MREHLELFW---SR 1342 (1630)
T ss_pred HHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cChhHhHHHHHHHHHHHhCCHHH-HHHHHHHHH---Hh
Confidence 76664 334555666778888888888888888877766 4443 3344344444433 333 334444443 32
Q ss_pred hCCCC------ChhHHHHHHHHHhccCChHHHHHHHHHh--------------CCCCchhHHHHHHHHHhcCC
Q 048766 400 YGIKP------TVEHCCSMIRLMGQKGEVWRAQRMIREL--------------GFGSYGVVWRALLSASGACS 452 (525)
Q Consensus 400 ~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~ 452 (525)
-.+++ +...|..++..|.+.|+++.|....-+- ....++..+...+..|...+
T Consensus 1343 ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1343 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 14443 4667888888888888888887333221 23345566666666665444
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=3.9e-17 Score=167.12 Aligned_cols=447 Identities=12% Similarity=0.047 Sum_probs=323.1
Q ss_pred HHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCC-HHHHH------------HHHhcCCCCCc----
Q 048766 7 FHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINS-LADAH------------KMFVEIPQPSV---- 69 (525)
Q Consensus 7 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~------------~~~~~~~~~~~---- 69 (525)
..|+..+=+.+++..-+.+++.-+..| ..++.++|+|...|...++ ++.-+ +..++- +|..
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~r-Dp~la~ia 920 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKR-DPHLACVA 920 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhc-CcchHHHH
Confidence 445555555666677777788778887 7899999999999986653 44311 111111 1111
Q ss_pred -----------------ccHHHHHHHHHhcCChHHHHH-----------HHHHHHhcCC--CCCHhhHHHHHHHHcccCC
Q 048766 70 -----------------VSWNSLISGYVQSGKYRKALN-----------LFVELERSEI--YADAYSFTSALAACGQLGS 119 (525)
Q Consensus 70 -----------------~~~~~ll~~~~~~~~~~~A~~-----------~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~ 119 (525)
..|....+-+++..+.+-=-. +.++-....+ ..++.-....+++|...|.
T Consensus 921 y~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~agl 1000 (1630)
T 1xi4_A 921 YERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADL 1000 (1630)
T ss_pred hcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCC
Confidence 112222222233333222111 1111111111 1234445667788888999
Q ss_pred hHHHHHHHHHHHHcc--cCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCC
Q 048766 120 LQLGMAIHSKIVKYS--LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197 (525)
Q Consensus 120 ~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 197 (525)
+.++.+++++..-.+ +..+....+.++....+. +..+..+..+....-+ ...+...+...|.+++|..+|++..
T Consensus 1001 p~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~ 1076 (1630)
T 1xi4_A 1001 PNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFD 1076 (1630)
T ss_pred HHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 999999999888432 113445667777777776 5566666666655333 4557888999999999999999974
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHh
Q 048766 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277 (525)
Q Consensus 198 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 277 (525)
.. ....+.+ +...+++++|.++.+++ .+..+|..+..++...|++++|.+.|.+. -|...|..++.++
T Consensus 1077 ~~-~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~ 1144 (1630)
T 1xi4_A 1077 VN-TSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAA 1144 (1630)
T ss_pred CH-HHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHH
Confidence 21 1112222 23788999999999987 44668999999999999999999999664 4677888999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHH
Q 048766 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357 (525)
Q Consensus 278 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (525)
.+.|+++++.+++...++.. +++.+.+.++.+|++.++++....+. ..++...|..+...|...|++++|..+|.
T Consensus 1145 ~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1145 NTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred HHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999888765 33334446899999999998655553 45677778889999999999999999999
Q ss_pred HHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCc
Q 048766 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437 (525)
Q Consensus 358 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (525)
.. ..|..+...+.+.|+ +++|.+.+++.. +..+|..+..++...|++..|......+ ..+
T Consensus 1220 kA----------~ny~rLA~tLvkLge-~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~ 1279 (1630)
T 1xi4_A 1220 NV----------SNFGRLASTLVHLGE-YQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVH 1279 (1630)
T ss_pred hh----------hHHHHHHHHHHHhCC-HHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcC
Confidence 85 258899999999999 999999998763 4588999999999999999999887653 345
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh--ccChhHHHHHHH
Q 048766 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS--HGNWDVASVMRN 496 (525)
Q Consensus 438 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~ 496 (525)
+..+..++..|.+.|.+++|+.+++.++.++|.+...|..|+.+|.+ .++..++.++|.
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56667888999999999999999999999999999999888888766 456666666654
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=9.5e-18 Score=163.91 Aligned_cols=360 Identities=9% Similarity=-0.023 Sum_probs=296.8
Q ss_pred HHHHHHHHHcccCCCcchhhHHHHHHHh----cCCHHHHHHHHhhccCC-ChhhHHHHHHHHHh----CCChHHHHHHHh
Q 048766 124 MAIHSKIVKYSLERGVVIANCLIDMYGK----CGSVEDAIGVFGEMIDK-DIISWNSVIAASAR----NGNLELAFGFLH 194 (525)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~ 194 (525)
...+....+. .+...+..+...|.. .+++++|...|++..+. +...+..+...|.. .+++++|...|+
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 3444444443 356777778888887 89999999999988654 67788889999998 999999999999
Q ss_pred cC-CCCCcchHHHHHHHHHh----cCChHHHHHHHhcCCC-CCcccHHHHHHHHHh----cCChhHHHHHHHHHhhCCCC
Q 048766 195 RL-PNPDTISYNEVINGIAQ----FGDIEDAIMILSSMPS-PNSSSWNSILTGYVN----RNRVPEALHLFGEMQSKDVP 264 (525)
Q Consensus 195 ~~-~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~ 264 (525)
+. ...+...+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|.++|++..+.|
T Consensus 104 ~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-- 181 (490)
T 2xm6_A 104 KAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG-- 181 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 98 33466778888889988 8899999999998764 456678888888887 789999999999998875
Q ss_pred CCHHHHHHHHHHhcc----ccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc----CCCHHHHHHHHHhcc-CCCHhH
Q 048766 265 MDEYTFSTMLSGIAG----LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK----CGQVEIADSMFRSLC-RKNLVT 335 (525)
Q Consensus 265 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~ 335 (525)
+...+..+...+.. .++.++|...++...+.+ +...+..+...|.. .+++++|...|++.. ..+...
T Consensus 182 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a 257 (490)
T 2xm6_A 182 -NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIA 257 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHH
T ss_pred -CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 67777788888877 899999999999999876 45567778888876 889999999999987 456677
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCC-----CCCcchHHHHHHHhhhhhCCCCCh
Q 048766 336 WNAMITGYAR----NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT-----DIPFDKVSEYFESMTKDYGIKPTV 406 (525)
Q Consensus 336 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~ 406 (525)
+..+...|.. .+++++|+++|++..+.| +...+..+...+... ++ +++|...+++..+. .++
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~-~~~A~~~~~~a~~~----~~~ 328 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKN-REQAISWYTKSAEQ----GDA 328 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCC-HHHHHHHHHHHHHT----TCH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCC-HHHHHHHHHHHHhc----CCH
Confidence 8888888888 899999999999998854 344555666666655 67 99999999998764 355
Q ss_pred hHHHHHHHHHhccC---ChHHHHHHHHHhCCCCchhHHHHHHHHHhc----CCChHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 407 EHCCSMIRLMGQKG---EVWRAQRMIRELGFGSYGVVWRALLSASGA----CSDLDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 407 ~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
..+..+...|.+.| ++++|++.+++.-...++..+..+...|.. .+++++|+..|+++.+.+ ++.++..|+
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg 406 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Confidence 67888888888766 889999999987323567888889888888 899999999999998865 689999999
Q ss_pred HHHhh----ccChhHHHHHHHHHHHcCC
Q 048766 480 NLYTS----HGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 480 ~~~~~----~g~~~~A~~~~~~~~~~~~ 503 (525)
.+|.. .+++++|...|++..+.+.
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99998 8999999999999999874
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=3.5e-18 Score=157.02 Aligned_cols=282 Identities=12% Similarity=0.162 Sum_probs=127.3
Q ss_pred ccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHH
Q 048766 50 KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129 (525)
Q Consensus 50 ~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 129 (525)
+.|++++|.+.++++..|+ +|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5677888888888886554 8888888888888888888888652 5677888888888888888888887776
Q ss_pred HHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHH
Q 048766 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVIN 209 (525)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 209 (525)
.++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..++..|...|.+++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 6663 45567788888888888888888877753 66678888888888888888888888877 47888888
Q ss_pred HHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHH
Q 048766 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289 (525)
Q Consensus 210 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 289 (525)
++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|.++++..+
T Consensus 157 ~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888888888 3778888888888888888888555443 223334455677888888888888888
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHcC--CCHHHHHHHHHhcc---C-----CCHhHHHHHHHHHHhcCChhHHHHHHH
Q 048766 290 HSCVIKQGLDASIVVASALLDMYSKC--GQVEIADSMFRSLC---R-----KNLVTWNAMITGYARNGDLTKVIELFE 357 (525)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~---~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (525)
++...... +....+|+.+..+|++- +++.+..+.|..-. + .+...|..+.-.|.+.++++.|..++-
T Consensus 230 Le~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 230 LEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 88887665 56677777777777754 33444444444332 1 245679999999999999998887543
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.6e-18 Score=167.43 Aligned_cols=367 Identities=11% Similarity=-0.007 Sum_probs=192.9
Q ss_pred HhhHHHHHHHHcccCChHHHHHHHHHHHHc-----c---cCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHH
Q 048766 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKY-----S---LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175 (525)
Q Consensus 104 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 175 (525)
...|+.+...+...|+.++|.+.|++..+. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~-------- 122 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH-------- 122 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH--------
Confidence 344555556666666666666666555432 0 111233455555566666666666555544421
Q ss_pred HHHHHHhCCChHHHHHHHhcCCC----CCcchHHHHHHHHHhc--CChHHHHHHHhcCCC--C-CcccHHHHHHH---HH
Q 048766 176 VIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQF--GDIEDAIMILSSMPS--P-NSSSWNSILTG---YV 243 (525)
Q Consensus 176 l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~--~-~~~~~~~l~~~---~~ 243 (525)
+...... ....++..+..++... +++++|...|++..+ | +...+..+..+ +.
T Consensus 123 ----------------i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~ 186 (472)
T 4g1t_A 123 ----------------VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD 186 (472)
T ss_dssp ----------------HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred ----------------HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 0000000 1122333333333332 235555555554431 2 22223333322 23
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHh----ccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHH
Q 048766 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI----AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319 (525)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 319 (525)
..++.++|++.+++..+.+ +.+...+..+...+ ...++.++|...++...+.. +.+..++..+...|...|+++
T Consensus 187 ~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 264 (472)
T 4g1t_A 187 NWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPD 264 (472)
T ss_dssp HSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHH
T ss_pred CchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchH
Confidence 3455666666666655542 22333343333222 23455666666666666654 445556666667777777777
Q ss_pred HHHHHHHhcc---CCCHhHHHHHHHHHHh-------------------cCChhHHHHHHHHHhhCCCCCC-CHhHHHHHH
Q 048766 320 IADSMFRSLC---RKNLVTWNAMITGYAR-------------------NGDLTKVIELFEQLKTVRDLQP-DSVTFLNVL 376 (525)
Q Consensus 320 ~A~~~~~~~~---~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 376 (525)
+|...+++.. +.+..++..+...|.. .+.++.|+..+++..+ ..| +..++..+.
T Consensus 265 ~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~lg 341 (472)
T 4g1t_A 265 KAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE---ANDNLFRVCSILA 341 (472)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH---HCTTTCCCHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh---cCCchhhhhhhHH
Confidence 7777776664 2334455555444432 2345678888888877 344 456677888
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCChh----HHHHHHHH-HhccCChHHHHHHHHHh-CCCCchhHHHHHHHHHhc
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVE----HCCSMIRL-MGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASGA 450 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~ 450 (525)
..+...|+ +++|.+.|++..+. .|+.. .+..+... +...|++++|+..+++. ...|+......
T Consensus 342 ~~~~~~~~-~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~------- 410 (472)
T 4g1t_A 342 SLHALADQ-YEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK------- 410 (472)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH-------
T ss_pred HHHHHhcc-HHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH-------
Confidence 88888998 99999999988753 34322 23333332 34678999999999876 55555433322
Q ss_pred CCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCccCCcccEE
Q 048766 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512 (525)
Q Consensus 451 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 512 (525)
....+..++++.++.+|+++.++..|+.+|...|++++|++.|++..+.+.......+|+
T Consensus 411 --~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 411 --MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp --HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred --HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 234556778888889999999999999999999999999999999999887655555553
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=4.5e-17 Score=160.81 Aligned_cols=416 Identities=12% Similarity=0.081 Sum_probs=275.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048766 26 HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ--P-SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA 102 (525)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p 102 (525)
++..++.. |-+...|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|..+|+++.+. .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 44445554 557777877777 4667888888888887765 3 4446777888888888888888888888774 36
Q ss_pred CHhhHHHHHHHH-cccCChHHHHH----HHHHHHHc-ccCC-CcchhhHHHHHHHh---------cCCHHHHHHHHhhcc
Q 048766 103 DAYSFTSALAAC-GQLGSLQLGMA----IHSKIVKY-SLER-GVVIANCLIDMYGK---------CGSVEDAIGVFGEMI 166 (525)
Q Consensus 103 ~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 166 (525)
+...|...+... ...|+.+.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 766666666433 33466665554 56655443 4333 44566666666544 678888888888876
Q ss_pred C-CCh---hhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHh----------cCC---C
Q 048766 167 D-KDI---ISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILS----------SMP---S 229 (525)
Q Consensus 167 ~-~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----------~~~---~ 229 (525)
. |.. ..|..........|. ..+..++.. ..+++..|..++. ... .
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred hchhhhHHHHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 5 221 122222111000010 011111110 1122333333222 111 1
Q ss_pred CC--------cccHHHHHHHHHhc----CCh----hHHHHHHHHHhhCCCCCCHHHHHHHHHHhcc-------ccchH--
Q 048766 230 PN--------SSSWNSILTGYVNR----NRV----PEALHLFGEMQSKDVPMDEYTFSTMLSGIAG-------LSALT-- 284 (525)
Q Consensus 230 ~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------~~~~~-- 284 (525)
|+ ...|...+...... ++. .++..+|++.... .+-+...|...+..+.. .|+++
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a 298 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhh
Confidence 11 12344444332221 222 3677888888775 24567777777777764 68876
Q ss_pred -----HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc--CC-CH-hHHHHHHHHHHhcCChhHHHHH
Q 048766 285 -----WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC--RK-NL-VTWNAMITGYARNGDLTKVIEL 355 (525)
Q Consensus 285 -----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~-~~~~~l~~~~~~~~~~~~a~~~ 355 (525)
+|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++. .| +. ..|..++..+.+.|++++|.++
T Consensus 299 ~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 299 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 378 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHH
Confidence 889999988874345678889999999999999999999999886 33 33 4788899999999999999999
Q ss_pred HHHHhhCCCCCCC-HhHHHHHHHH-HcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-
Q 048766 356 FEQLKTVRDLQPD-SVTFLNVLAA-CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL- 432 (525)
Q Consensus 356 ~~~~~~~~~~~p~-~~~~~~l~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 432 (525)
|++..+. .|+ ...+...... +...|+ .++|..+|+...+.. +.++..|..++..+.+.|+.++|..+|++.
T Consensus 379 ~~~Al~~---~~~~~~~~~~~a~~~~~~~~~-~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al 452 (530)
T 2ooe_A 379 FKKARED---ARTRHHVYVTAALMEYYCSKD-KSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 452 (530)
T ss_dssp HHHHHTC---TTCCTHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHhc---cCCchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHH
Confidence 9999983 443 3333332222 235787 999999999998652 336788999999999999999999999987
Q ss_pred ---CCCCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 433 ---GFGSY--GVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 433 ---~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
+..|+ ...|...+......|+.+.+..+++++.+..|+
T Consensus 453 ~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 453 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 22333 347878888888899999999999999998874
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=1e-18 Score=160.57 Aligned_cols=285 Identities=15% Similarity=0.135 Sum_probs=128.6
Q ss_pred ccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhc
Q 048766 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195 (525)
Q Consensus 116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 195 (525)
+.|++++|.+.++++ +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445667777766665 22246777777777777777777777543 4555677777777777777777776655
Q ss_pred CC--CCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 048766 196 LP--NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273 (525)
Q Consensus 196 ~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 273 (525)
.. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..++..|...|++++|..+|..+ ..|..+
T Consensus 87 ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~L 154 (449)
T 1b89_A 87 ARKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHH
T ss_pred HHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHH
Confidence 52 23456677777888888888887777753 66678888888888888888888888866 367888
Q ss_pred HHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHH
Q 048766 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353 (525)
Q Consensus 274 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 353 (525)
+.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|+
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHH
Confidence 88888888888888888777 257788888888888888888876666544 44444556888899999999999
Q ss_pred HHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC------ChhHHHHHHHHHhccCChHHHH
Q 048766 354 ELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP------TVEHCCSMIRLMGQKGEVWRAQ 426 (525)
Q Consensus 354 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~ 426 (525)
.+++.... ..+ -...|+.+.-.+++-. +++..+.++....+-.++| +...|..++..|...++++.|.
T Consensus 228 ~lLe~aL~---le~ah~~~ftel~il~~ky~--p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 228 TMLEAALG---LERAHMGMFTELAILYSKFK--PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHTT---STTCCHHHHHHHHHHHHTTC--HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhC---CcHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 99998876 444 3455666655555543 4555555554444324454 4677889999999999999888
Q ss_pred HHHHHh
Q 048766 427 RMIREL 432 (525)
Q Consensus 427 ~~~~~~ 432 (525)
...-+-
T Consensus 303 ~tm~~h 308 (449)
T 1b89_A 303 ITMMNH 308 (449)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 876654
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=1.1e-17 Score=150.69 Aligned_cols=269 Identities=8% Similarity=0.007 Sum_probs=195.0
Q ss_pred HHhcCChHHHHHHHhcCCCCC----cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHH
Q 048766 211 IAQFGDIEDAIMILSSMPSPN----SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286 (525)
Q Consensus 211 ~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 286 (525)
....|+++.|+..++.....+ ......+.++|...|+++.|+..++. .-+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 344566666666665544322 12334456677777777777765543 1345566666777777777777777
Q ss_pred HHHHHHHHHhCC-CchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 048766 287 MLIHSCVIKQGL-DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365 (525)
Q Consensus 287 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 365 (525)
...++.+...+. +.+...+..+..++...|++++|.+.++. +.+...+..++..+.+.|++++|.+.++++.+ .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~ 159 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD---Q 159 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---h
Confidence 777777766653 44566677778889999999999999988 56778899999999999999999999999998 5
Q ss_pred CCCHhHHH---HHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhH
Q 048766 366 QPDSVTFL---NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVV 440 (525)
Q Consensus 366 ~p~~~~~~---~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~ 440 (525)
.|+..... ..+..+...|+ +++|..+|+++.+. .+.++..++.++.++.+.|++++|...++++ ...| ++.+
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~-~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEK-LQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 56643221 23344445677 99999999999874 3557888999999999999999999999986 3333 5678
Q ss_pred HHHHHHHHhcCCChHH-HHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHH
Q 048766 441 WRALLSASGACSDLDV-ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (525)
+..++..+...|+.++ +.++++++++.+|+++.+.. ...+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 8888888888998875 57899999999998887654 455555555554433
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=8.1e-19 Score=164.84 Aligned_cols=262 Identities=9% Similarity=-0.030 Sum_probs=202.5
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 048766 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLD 310 (525)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 310 (525)
+...+..+...+.+.|++++|..+|+++.... +.+..++..+..++...|++++|...++.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34457777777888888888888888877653 4466777778888888888888888888887765 455777888888
Q ss_pred HHHcCCCHHHHHHHHHhccCCC-------------HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHH
Q 048766 311 MYSKCGQVEIADSMFRSLCRKN-------------LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377 (525)
Q Consensus 311 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 377 (525)
+|...|++++|...++++...+ ...+..+...+...|++++|+..++++.+.....++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 8888888888888888875321 122344578888999999999999999984311115788889999
Q ss_pred HHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChH
Q 048766 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLD 455 (525)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~ 455 (525)
.+...|+ +++|.+.++++.+. .+.+...|..++.+|.+.|++++|+..++++ ...| +...+..++..+...|+++
T Consensus 222 ~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGE-FNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999 99999999999864 2346788999999999999999999999987 3334 4778899999999999999
Q ss_pred HHHHHHHHHHhhcCC------------ChhHHHHHHHHHhhccChhHHHHHHHH
Q 048766 456 VARISAAEVIKLEGD------------SDYVYVMLCNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 456 ~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (525)
+|+..+++++++.|+ +...+..++.++...|+.+.+....++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999876 367899999999999999999887754
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=2e-18 Score=159.37 Aligned_cols=263 Identities=10% Similarity=-0.000 Sum_probs=209.5
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 048766 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLD 310 (525)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 310 (525)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 33456677777888888888888888877653 4466777777788888888888888888887775 556677778888
Q ss_pred HHHcCCCHHHHHHHHHhccC---CCHhHHHHH--------------HH-HHHhcCChhHHHHHHHHHhhCCCCCCCHhHH
Q 048766 311 MYSKCGQVEIADSMFRSLCR---KNLVTWNAM--------------IT-GYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372 (525)
Q Consensus 311 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 372 (525)
.+...|++++|.+.++.+.. .+...+..+ .. .+...|++++|+..++++.+.. +.+...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCHHHH
Confidence 88888888888888888752 222233332 22 3677889999999999999843 3367888
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhc
Q 048766 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGA 450 (525)
Q Consensus 373 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~ 450 (525)
..+...+...|+ +++|.+.++++.+. .+.+...+..++..|.+.|++++|...++++ .. +.+...+..++..+..
T Consensus 176 ~~la~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 176 ASLGVLYNLSNN-YDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 889999999999 99999999999864 2345788999999999999999999999987 32 3457788899999999
Q ss_pred CCChHHHHHHHHHHHhhcCC------------ChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 451 CSDLDVARISAAEVIKLEGD------------SDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 451 ~~~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.|++++|.+.++++++..|+ ++.++..++.++...|++++|..++++..+
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999998 788999999999999999999999875543
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=1.9e-18 Score=162.55 Aligned_cols=277 Identities=12% Similarity=0.007 Sum_probs=205.1
Q ss_pred CChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH-HHHHHhhCCC-CC--CHHHHHHHHHHhccccchHHHHHHH
Q 048766 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH-LFGEMQSKDV-PM--DEYTFSTMLSGIAGLSALTWGMLIH 290 (525)
Q Consensus 215 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~m~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~ 290 (525)
+.++.+...|+.+.+.+.. ++...|++++|.. .|++...... .| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444455555554432221 3445688999998 8887665321 11 3456778889999999999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 048766 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367 (525)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 367 (525)
+.+.+.. +.+..++..+..++...|++++|...++++. +.+..++..++..+...|++++|++.++++.+ ..|
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~ 163 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR---YTP 163 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TST
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCc
Confidence 9999876 5678889999999999999999999999886 45778999999999999999999999999998 445
Q ss_pred CHh-HHHH---------------HHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHH
Q 048766 368 DSV-TFLN---------------VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431 (525)
Q Consensus 368 ~~~-~~~~---------------l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (525)
+.. .+.. .+..+...|+ +++|...++++.+...-.++...+..++..|.+.|++++|+..+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL-FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp TTGGGCC---------------CTTHHHHHHHH-HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhhhhcccHHHHHHHHHhhccc-HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 432 2211 2333447787 9999999999986522222578899999999999999999999998
Q ss_pred h-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 432 L-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 432 ~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+ .. +.+...+..++..+...|++++|+..++++++..|+++.++..++.+|.+.|++++|...++++.+..+
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 7 32 344778899999999999999999999999999999999999999999999999999999999987544
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=8.5e-18 Score=151.47 Aligned_cols=249 Identities=6% Similarity=-0.022 Sum_probs=205.4
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCH--HHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 048766 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDE--YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316 (525)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (525)
++-....|++..|+..++..... .|+. .....+.+++...|+++.|...++. ..+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45566789999999999886553 3443 3556678899999999999976644 24678889999999999999
Q ss_pred CHHHHHHHHHhcc----CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHH
Q 048766 317 QVEIADSMFRSLC----RK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE 391 (525)
Q Consensus 317 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~ 391 (525)
+.+.|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..+...+...|+ +++|.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~-~~~A~~ 151 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDR-LDLARK 151 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCC-HHHHHH
Confidence 9999999999874 13 566778888999999999999999986 3467788889999999999 999999
Q ss_pred HHHHhhhhhCCCCChhHH---HHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 392 YFESMTKDYGIKPTVEHC---CSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
.++++.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...+..++.++.+.|++++|+..++++++
T Consensus 152 ~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999865 4654211 22345555679999999999998 3345678889999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHhhccChhH-HHHHHHHHHHcCCc
Q 048766 467 LEGDSDYVYVMLCNLYTSHGNWDV-ASVMRNFMRERGLR 504 (525)
Q Consensus 467 ~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~ 504 (525)
.+|+++.++..++.++...|+.++ +.++++++.+..+.
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999986 57899999877653
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=6.9e-18 Score=158.45 Aligned_cols=233 Identities=12% Similarity=-0.025 Sum_probs=197.6
Q ss_pred CHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHH
Q 048766 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITG 342 (525)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 342 (525)
+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++. +.+..+|..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44558888889999999999999999999886 5678899999999999999999999999986 4567899999999
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCH-hH----------HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHH
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPDS-VT----------FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~----------~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 411 (525)
|...|++++|+..++++.+ ..|+. .. +..+...+...|+ +++|.++++++.+...-.+++..+..
T Consensus 143 ~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK---QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV-LEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCHHHHCC-------------------CCHH-HHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH---hCccchHHHhhhccchHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 9999999999999999988 45542 22 2334678888998 99999999999875222226889999
Q ss_pred HHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChh
Q 048766 412 MIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD 489 (525)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 489 (525)
++..|.+.|++++|+..++++ . .+.+..+|..++..+...|++++|+..++++++..|+++.++..++.+|...|+++
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999987 2 23457889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 048766 490 VASVMRNFMRERGL 503 (525)
Q Consensus 490 ~A~~~~~~~~~~~~ 503 (525)
+|...++++.+..+
T Consensus 299 ~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 299 EAVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999987654
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=8.5e-17 Score=156.68 Aligned_cols=380 Identities=9% Similarity=-0.056 Sum_probs=223.8
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHhc-----C--CCC-CHhhHHHHHHHHcccCChHHHHHHHHHHHHccc---
Q 048766 67 PSVVSWNSLISGYVQSGKYRKALNLFVELERS-----E--IYA-DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL--- 135 (525)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--- 135 (525)
.....||.+...+...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...+++..+...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999987652 1 122 356889999999999999999999988875321
Q ss_pred ---C-CCcchhhHHHHHHHh--cCCHHHHHHHHhhccC--C-ChhhHHHHHHH---HHhCCChHHHHHHHhcC---CCCC
Q 048766 136 ---E-RGVVIANCLIDMYGK--CGSVEDAIGVFGEMID--K-DIISWNSVIAA---SARNGNLELAFGFLHRL---PNPD 200 (525)
Q Consensus 136 ---~-~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~---~~~~ 200 (525)
. ....++..+..++.. .+++++|+..|++..+ | +...+..+..+ +...++.++|++.+++. .+.+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 1 123455555555554 4578999999998854 4 34445444444 44567777888877776 3334
Q ss_pred cchHHHHHHHHHh----cCChHHHHHHHhcCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 048766 201 TISYNEVINGIAQ----FGDIEDAIMILSSMP---SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273 (525)
Q Consensus 201 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 273 (525)
..++..+...+.. .+++++|...+++.. ..+...+..+...|...|++++|...+++..+.. +-+..++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 4455555544443 355667777776654 2344567777777777888888888777776642 2334444444
Q ss_pred HHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChh
Q 048766 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLT 350 (525)
Q Consensus 274 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 350 (525)
..++...+....... . ..........+..+.|...++... +.+..++..+...|...|+++
T Consensus 288 g~~y~~~~~~~~~~~----------~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLR----------E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhHH----------H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 444322111100000 0 000000111233567777777765 345668888999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCHh----HHHHHHH-HHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHH
Q 048766 351 KVIELFEQLKTVRDLQPDSV----TFLNVLA-ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425 (525)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~~~----~~~~l~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 425 (525)
+|++.|++..+ ..|+.. .+..+.. .....|+ +++|++.|++.. .+.|+....... ...+
T Consensus 352 ~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ai~~y~kal---~i~~~~~~~~~~---------~~~l 415 (472)
T 4g1t_A 352 EAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKC-EDKAIHHFIEGV---KINQKSREKEKM---------KDKL 415 (472)
T ss_dssp HHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSC-HHHHHHHHHHHH---HSCCCCHHHHHH---------HHHH
T ss_pred HHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH---hcCcccHHHHHH---------HHHH
Confidence 99999999988 444432 2222222 2346677 999999999887 456664333222 2333
Q ss_pred HHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 426 QRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 426 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
.++++.. ..+.++.+|..++..+...|++++|++.|+++++.+|.+|.+...+|
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 4444443 22445788999999999999999999999999999998888877655
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=1e-16 Score=138.05 Aligned_cols=193 Identities=11% Similarity=0.030 Sum_probs=153.3
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHH
Q 048766 299 DASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLN 374 (525)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 374 (525)
|++...+..+...+.+.|++++|...|++.. +.+...+..+...+.+.|++++|+..+++..+ ..|+ ...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA---RTPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHH
Confidence 4556677778888888999999999988876 34567888888999999999999999999988 5664 667778
Q ss_pred HHHHHcCC-----------CCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHH
Q 048766 375 VLAACSHT-----------DIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVW 441 (525)
Q Consensus 375 l~~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 441 (525)
+...+... |+ +++|+..+++..+. .| +...+..++.+|...|++++|+..|++. ....++..+
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 154 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGY-LEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIR 154 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHH-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhhhhhhhhcccccC-HHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH
Confidence 88888888 88 99999999999854 55 5778889999999999999999999987 212678889
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
..++..+...|++++|+..++++++.+|+++.++..++.++...|++++|+..+++.
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998765
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=3.8e-16 Score=144.01 Aligned_cols=230 Identities=9% Similarity=-0.024 Sum_probs=194.9
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHH
Q 048766 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYA 344 (525)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 344 (525)
..+..+...+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...++++. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 456677788889999999999999999876 5577888889999999999999999999886 446778999999999
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCCHh-HHHHH--------------HH-HHcCCCCCcchHHHHHHHhhhhhCCCCChhH
Q 048766 345 RNGDLTKVIELFEQLKTVRDLQPDSV-TFLNV--------------LA-ACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408 (525)
Q Consensus 345 ~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--------------~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 408 (525)
..|++++|++.++++.+ ..|+.. .+..+ .. .+...|+ +++|.++++++.+. .+.+...
T Consensus 101 ~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~ 174 (327)
T 3cv0_A 101 NEHNANAALASLRAWLL---SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE-YRECRTLLHAALEM--NPNDAQL 174 (327)
T ss_dssp HTTCHHHHHHHHHHHHH---TSTTTTTC--------------------CCTTSHHH-HHHHHHHHHHHHHH--STTCHHH
T ss_pred HcCCHHHHHHHHHHHHH---hCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc-HHHHHHHHHHHHhh--CCCCHHH
Confidence 99999999999999998 455433 22222 22 3677787 99999999999864 2346788
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
+..++..|.+.|++++|...++++ .. +.+...+..++..+...|++++|+..++++++..|+++.++..++.++...|
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999987 22 3457788899999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCc
Q 048766 487 NWDVASVMRNFMRERGLR 504 (525)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~ 504 (525)
++++|...++++.+..+.
T Consensus 255 ~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCc
Confidence 999999999999876544
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3e-16 Score=139.33 Aligned_cols=216 Identities=12% Similarity=0.020 Sum_probs=144.4
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC--C----C----HhHHHHHH
Q 048766 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR--K----N----LVTWNAMI 340 (525)
Q Consensus 271 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l~ 340 (525)
..+...+...|++++|...+..+.+.. .+..++..+..++...|++++|...++.... | + ..+|..+.
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 333444444444444444444444444 3344455555555555555555555555431 1 1 35666777
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhcc
Q 048766 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQK 419 (525)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 419 (525)
..+...|++++|+..++++.+ ..|+... +...|+ +++|.+.++.+... .| +...+..++..+...
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~---~~~~~~~-------~~~~~~-~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLT---EHRTADI-------LTKLRN-AEKELKKAEAEAYV---NPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCCCHHH-------HHHHHH-HHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcccHHHHHHHHHHHHh---cCchhHH-------HHHHhH-HHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHh
Confidence 777778888888888887777 4555433 333455 77888888777642 33 456677778888888
Q ss_pred CChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHH
Q 048766 420 GEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 420 g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (525)
|++++|...++++ ..+.+...+..++..+...|++++|+..++++++..|+++.++..++.++...|++++|...+++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8888888888876 22334667777888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcC
Q 048766 498 MRERG 502 (525)
Q Consensus 498 ~~~~~ 502 (525)
..+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 77654
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=8.4e-16 Score=137.71 Aligned_cols=246 Identities=12% Similarity=0.029 Sum_probs=165.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCc--hHHHHHHHHHH
Q 048766 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA--SIVVASALLDM 311 (525)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 311 (525)
.+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+.+....+ ....+..+..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34445556666666666666666666542 2233355556666666666666666666666532111 13346677777
Q ss_pred HHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcc
Q 048766 312 YSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFD 387 (525)
Q Consensus 312 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 387 (525)
+...|++++|...|+... +.+..+|..+...|...|++++|+..+++..+ ..|+ ...+..+...+...++ ++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~-~~ 159 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKE-YV 159 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTC-HH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHH-HH
Confidence 788888888888887775 34556788888888888888888888888887 4553 5555555523334446 88
Q ss_pred hHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCC---hHHHHHHHHHh----CCCCc------hhHHHHHHHHHhcCCC
Q 048766 388 KVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGE---VWRAQRMIREL----GFGSY------GVVWRALLSASGACSD 453 (525)
Q Consensus 388 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~~~------~~~~~~l~~~~~~~~~ 453 (525)
+|.+.++++.+. .| +...+..++..+...|+ +++|...++++ ...|+ ...+..++..+...|+
T Consensus 160 ~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 160 KADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 898888888754 34 46677777888877777 77788887765 22233 2467778888999999
Q ss_pred hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccC
Q 048766 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 487 (525)
+++|++.++++++++|+++.+...+.......+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 237 KVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 9999999999999999999999988887766543
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=1.5e-15 Score=146.07 Aligned_cols=257 Identities=7% Similarity=-0.011 Sum_probs=169.3
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcccc---chHHHHHHHHHHHHhCCCchHHHHHH
Q 048766 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS---ALTWGMLIHSCVIKQGLDASIVVASA 307 (525)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ 307 (525)
+...+..+...|...+.++++......+...-...++..+..+...+...| +.++|...++...+.| +++...+..
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~ 218 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDS 218 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHH
Confidence 344555666666666654444433222222111112225556666666667 7777777777777776 444444455
Q ss_pred HHHHHHcC----CCHHHHHHHHHhccCCCHhHHHHHHHH-H--HhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHc
Q 048766 308 LLDMYSKC----GQVEIADSMFRSLCRKNLVTWNAMITG-Y--ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380 (525)
Q Consensus 308 l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 380 (525)
+..+|... +++++|...|+...+.++..+..+... + ...+++++|+++|++..+.| +......+...|.
T Consensus 219 Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 219 VARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 66666544 688888888888774456677777776 3 45789999999999988855 4455555555555
Q ss_pred CCC-----CCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhc----cCChHHHHHHHHHhCCCCchhHHHHHHHHHhc-
Q 048766 381 HTD-----IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ----KGEVWRAQRMIRELGFGSYGVVWRALLSASGA- 450 (525)
Q Consensus 381 ~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~- 450 (525)
.| + +++|.++|++.. .-++..+..|...|.. ..++++|...|++.-...++.....+...|..
T Consensus 295 -~G~g~~~d-~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G 367 (452)
T 3e4b_A 295 -EGKWVPAD-AKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQG 367 (452)
T ss_dssp -HCSSSCCC-HHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSC
T ss_pred -cCCCCCCC-HHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhC
Confidence 33 5 889999998775 3466777788888766 44899999999987333455666667766653
Q ss_pred ---CCChHHHHHHHHHHHhhcCCChhHHHHHHHH--HhhccChhHHHHHHHHHHHc
Q 048766 451 ---CSDLDVARISAAEVIKLEGDSDYVYVMLCNL--YTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 451 ---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~ 501 (525)
.+|+++|...|+++.+.++ +.+...+..+ ....++.++|..+.++..+.
T Consensus 368 ~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 368 KGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 5699999999999999885 3344444444 34456788888888877664
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=5.4e-16 Score=137.68 Aligned_cols=234 Identities=8% Similarity=-0.003 Sum_probs=193.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCC--ch----HHHHH
Q 048766 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD--AS----IVVAS 306 (525)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 306 (525)
..|..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...+..+.+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356777888888999999999999888876 67788888888899999999999998888765311 11 57888
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcc--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCC
Q 048766 307 ALLDMYSKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTD 383 (525)
Q Consensus 307 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~ 383 (525)
.+..++...|++++|...++++. .++ ...+...|++++|+..++++.. ..|+ ...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhc
Confidence 89999999999999999999886 344 2456677889999999999998 5564 567888888899999
Q ss_pred CCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHH
Q 048766 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISA 461 (525)
Q Consensus 384 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 461 (525)
+ +++|.+.++++.+. .+.++..+..++..|.+.|++++|...++++ .. +.+...+..++..+...|++++|...+
T Consensus 154 ~-~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 D-WPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp C-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred C-HHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9 99999999999864 2346788999999999999999999999987 32 344778889999999999999999999
Q ss_pred HHHHhhc------CCChhHHHHHHHH
Q 048766 462 AEVIKLE------GDSDYVYVMLCNL 481 (525)
Q Consensus 462 ~~~~~~~------p~~~~~~~~l~~~ 481 (525)
+++++.. |++..++..+..+
T Consensus 231 ~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 231 DAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999 8877777776654
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.71 E-value=1e-15 Score=137.34 Aligned_cols=241 Identities=7% Similarity=-0.165 Sum_probs=192.1
Q ss_pred hcCChhHHHHHHHHHhhCCCC---CCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHH
Q 048766 244 NRNRVPEALHLFGEMQSKDVP---MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320 (525)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 320 (525)
..|++++|+..|+++.+.... .+..++..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457889999999998876321 135677788888899999999999999998876 5567888899999999999999
Q ss_pred HHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhh
Q 048766 321 ADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397 (525)
Q Consensus 321 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 397 (525)
|...|+++. +.+..++..+...|...|++++|+..++++.+ ..|+.......+..+...|+ +++|...++...
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLD-EKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcC-HHHHHHHHHHHH
Confidence 999999886 34677899999999999999999999999998 56765555555555666688 999999998887
Q ss_pred hhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 398 KDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-----GVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 398 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
.. .+++...+ .++..+...++.++|...+++. ...|. ...+..++..+...|++++|...++++++.+|++
T Consensus 172 ~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 64 23444444 4777888888999999999987 33332 4678889999999999999999999999999977
Q ss_pred hhHHHHHHHHHhhccChhHHHHHH
Q 048766 472 DYVYVMLCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~ 495 (525)
...+ +.++...|++++|++.+
T Consensus 249 ~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHH---HHHHHHHHHHHHC----
T ss_pred HHHH---HHHHHHHHHHHhhHHHH
Confidence 5544 66788899999998876
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=3e-15 Score=143.86 Aligned_cols=373 Identities=9% Similarity=-0.010 Sum_probs=194.8
Q ss_pred HHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCH---HHHHHHHhcCCCCCcccHHHHHHHHHhcC--
Q 048766 9 LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSL---ADAHKMFVEIPQPSVVSWNSLISGYVQSG-- 83 (525)
Q Consensus 9 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~ll~~~~~~~-- 83 (525)
+...+.+.|++++|.++|....+.| ++..+..|...|...|+. ++|.+.|++..+.++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4556677888999999998888776 233344566666667777 88888888877666667777777555555
Q ss_pred ---ChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChH---HHHHHHHHHHHcccCCCcchhhHHHHHHHhcC----
Q 048766 84 ---KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ---LGMAIHSKIVKYSLERGVVIANCLIDMYGKCG---- 153 (525)
Q Consensus 84 ---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 153 (525)
++++|+..|++..+.|. ...+..|...+...+... .+.+.+......| +......|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 67888888888887653 235566666665544433 3444444444433 3456666777777766
Q ss_pred CHHHHHHHHhhccCCChhhHHHHHHHHHhCC---ChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcC
Q 048766 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNG---NLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSM 227 (525)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 227 (525)
+.+.+..+++.....++.++..+...|...| +.++|+..|++. .+++...+..+...|...
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g------------- 226 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDA------------- 226 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCG-------------
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------
Confidence 3444555555555556666667777776666 666666666655 112222223333333222
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH-h--ccccchHHHHHHHHHHHHhCCCchHHH
Q 048766 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG-I--AGLSALTWGMLIHSCVIKQGLDASIVV 304 (525)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~ 304 (525)
....+++++|..+|++.. .| +...+..+... + ...+++++|...+++..+.| +...
T Consensus 227 --------------~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A 285 (452)
T 3e4b_A 227 --------------TLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRA 285 (452)
T ss_dssp --------------GGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHH
T ss_pred --------------CCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 000145566666666555 22 22333333333 2 33556666666666666555 3444
Q ss_pred HHHHHHHHHcCC-----CHHHHHHHHHhccCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCCHhHHHHH
Q 048766 305 ASALLDMYSKCG-----QVEIADSMFRSLCRKNLVTWNAMITGYAR----NGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375 (525)
Q Consensus 305 ~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 375 (525)
...+..+|. .| ++++|.+.|++....++..+..|...|.. ..++++|..+|++..+.| .|+. ...+
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A--~~~L 360 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSA--DFAI 360 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTH--HHHH
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHH--HHHH
Confidence 445555555 33 77777777777663355566666666655 337777777777777655 2332 3333
Q ss_pred HHHHcC----CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 376 LAACSH----TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 376 ~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
...|.. ..+ .++|..+|+...+. | .++.......+......++..+|..+.++.
T Consensus 361 g~~y~~G~g~~~d-~~~A~~~~~~A~~~-g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~ 418 (452)
T 3e4b_A 361 AQLFSQGKGTKPD-PLNAYVFSQLAKAQ-D-TPEANDLATQLEAPLTPAQRAEGQRLVQQE 418 (452)
T ss_dssp HHHHHSCTTBCCC-HHHHHHHHHHHHTT-C-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCC-HHHHHHHHHHHHHC-C-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333332 234 67777777777654 4 233332333333334455666676666654
No 42
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=2.5e-17 Score=163.48 Aligned_cols=125 Identities=13% Similarity=0.180 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHHccCCHHHHHHHHhcCC-------CCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHH
Q 048766 37 NVFVSTALMGFYRKINSLADAHKMFVEIP-------QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109 (525)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 109 (525)
-..+|++||++||+.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45689999999999999999999997753 49999999999999999999999999999999999999999999
Q ss_pred HHHHHcccCCh-HHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHH
Q 048766 110 ALAACGQLGSL-QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161 (525)
Q Consensus 110 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 161 (525)
+|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++.+.++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999999985 78999999999999999999999998776665444433333
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=3.6e-14 Score=122.89 Aligned_cols=201 Identities=12% Similarity=0.022 Sum_probs=161.8
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHH
Q 048766 299 DASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375 (525)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 375 (525)
+.+...+..+...+...|++++|.+.++.+. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHH
Confidence 3456667777888888888888888888765 3456678888888889999999999999888732 2356777888
Q ss_pred HHHHcCC-CCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcC
Q 048766 376 LAACSHT-DIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGAC 451 (525)
Q Consensus 376 ~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~ 451 (525)
...+... |+ +++|.+.++++.+. +..|+ ...+..++..+...|++++|+..++++ ... .+...+..++..+...
T Consensus 83 ~~~~~~~~~~-~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 83 GWFLCGRLNR-PAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHTTTCC-HHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCc-HHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 8888888 88 99999999888762 33443 567888888999999999999999886 222 3467788888889999
Q ss_pred CChHHHHHHHHHHHhhcC-CChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 452 SDLDVARISAAEVIKLEG-DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 452 ~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
|++++|...++++++..| +++..+..++..+...|+.++|..+++.+.+..+
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 999999999999999999 8889898888889999999999999988876644
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=2e-14 Score=133.83 Aligned_cols=244 Identities=11% Similarity=0.024 Sum_probs=193.9
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccc-hHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 048766 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA-LTWGMLIHSCVIKQGLDASIVVASALLDM 311 (525)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (525)
..|..+...+.+.|++++|+..+++.+... +-+...|..+..++...|+ +++|+..++++++.. +.+..+|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 357777888888899999999999888753 3456777888888888886 999999998888877 5577788888888
Q ss_pred HHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcC-CCCCc
Q 048766 312 YSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSH-TDIPF 386 (525)
Q Consensus 312 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~~~~~ 386 (525)
+...|++++|...|+++. +.+...|..+..++...|++++|+..++++.+ ..| +...|+.+..++.. .|. .
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~-~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGY-N 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCS-C
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCc-c
Confidence 999999999999998886 45677888899999999999999999999998 566 46778888888877 444 5
Q ss_pred chH-----HHHHHHhhhhhCCCC-ChhHHHHHHHHHhccC--ChHHHHHHHHHhCCCCc-hhHHHHHHHHHhcCC-----
Q 048766 387 DKV-----SEYFESMTKDYGIKP-TVEHCCSMIRLMGQKG--EVWRAQRMIRELGFGSY-GVVWRALLSASGACS----- 452 (525)
Q Consensus 387 ~~a-----~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~~----- 452 (525)
++| ++.+++..+. .| +...|..+..++...| ++++|++.++++...|+ ...+..++..+.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 788 4778887753 45 4677888888888888 68899998888844444 566777777777653
Q ss_pred ---C-hHHHHHHHHHH-HhhcCCChhHHHHHHHHHhhc
Q 048766 453 ---D-LDVARISAAEV-IKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 453 ---~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 485 (525)
+ +++|+++++++ .+.+|.....|..++..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58899999999 899998888888888776554
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=1.1e-13 Score=123.98 Aligned_cols=189 Identities=12% Similarity=0.011 Sum_probs=120.9
Q ss_pred HHHHHHHHHHc----CCCHHHHHHHHHhcc-CCCHhHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCCHhHHHH
Q 048766 304 VASALLDMYSK----CGQVEIADSMFRSLC-RKNLVTWNAMITGYAR----NGDLTKVIELFEQLKTVRDLQPDSVTFLN 374 (525)
Q Consensus 304 ~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 374 (525)
.+..+...|.. .+++++|...|++.. ..+...+..+...|.. .+++++|++.|++..+.+ +...+..
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~ 115 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCAS 115 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHH
Confidence 33444444555 555555555555544 2244555556666666 666677777766666632 4455555
Q ss_pred HHHHHcC----CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhc----cCChHHHHHHHHHhCCCCchhHHHHHHH
Q 048766 375 VLAACSH----TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ----KGEVWRAQRMIRELGFGSYGVVWRALLS 446 (525)
Q Consensus 375 l~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 446 (525)
+...+.. .++ +++|.+.+++..+. + +...+..+...|.. .+++++|+..+++.-...+...+..+..
T Consensus 116 lg~~~~~~~~~~~~-~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 190 (273)
T 1ouv_A 116 LGGIYHDGKVVTRD-FKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGN 190 (273)
T ss_dssp HHHHHHHCSSSCCC-HHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCCcccC-HHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6556655 666 77777777766653 2 44556666666666 6777777777776511234556666777
Q ss_pred HHhc----CCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh----ccChhHHHHHHHHHHHcCC
Q 048766 447 ASGA----CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS----HGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 447 ~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 503 (525)
.+.. .+++++|+..++++++.+| +.++..++.+|.. .+++++|...+++..+.|.
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 7777 7788888888888777765 6677777888877 7788888888887777665
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=2.6e-14 Score=126.38 Aligned_cols=198 Identities=10% Similarity=-0.034 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHH
Q 048766 302 IVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378 (525)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 378 (525)
...+..+...+...|++++|.+.++++. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHH
Confidence 4566677777778888888888887765 3456677778888888888888888888887732 2256677777788
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLD 455 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~ 455 (525)
+...|+ +++|.++++++.+. +..| +...+..++..|...|++++|...++++ .. +.+...+..++..+...|+++
T Consensus 115 ~~~~g~-~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKR-YEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTC-HHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhH-HHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 888888 88888888888752 2444 4567777888888888888888888876 22 234667778888888888888
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 456 VARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 456 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+|...++++++..|+++..+..++.++...|++++|.++++++.+..+
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 888888888888888888888888888888888888888888877654
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=2.6e-14 Score=133.04 Aligned_cols=227 Identities=10% Similarity=0.087 Sum_probs=194.7
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCC-HHHHHHHHHhcc---CCCHhHHHHHHHH
Q 048766 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ-VEIADSMFRSLC---RKNLVTWNAMITG 342 (525)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~l~~~ 342 (525)
...|..+..++...|++++|+..++.+++.. +.+..++..+..++...|+ +++|+..|+++. +.+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3456777778889999999999999999987 6678889999999999997 999999999987 4567899999999
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhc-c
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQ-K 419 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~ 419 (525)
+...|++++|+..|+++.+ ..| +...|..+..++...|+ +++|++.++++.+. .| +...|+.++.+|.+ .
T Consensus 176 ~~~~g~~~eAl~~~~kal~---ldP~~~~a~~~lg~~~~~~g~-~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKL-WDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHccCHHHHHHHHHHHHH---hCccCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999 666 57888899999999999 99999999999864 55 57889999999999 6
Q ss_pred CChHHH-----HHHHHHh-CCCC-chhHHHHHHHHHhcCC--ChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc----
Q 048766 420 GEVWRA-----QRMIREL-GFGS-YGVVWRALLSASGACS--DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG---- 486 (525)
Q Consensus 420 g~~~~A-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---- 486 (525)
|..++| +..+++. ...| +...|..+...+...| ++++|++.++++ +.+|+++.++..++.+|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred CcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccc
Confidence 665887 4777775 3344 4678888888888888 699999999998 889999999999999999975
Q ss_pred -----ChhHHHHHHHHH-HHcC
Q 048766 487 -----NWDVASVMRNFM-RERG 502 (525)
Q Consensus 487 -----~~~~A~~~~~~~-~~~~ 502 (525)
.+++|+.+++++ .+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHHHhC
Confidence 358999999998 5543
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=5.2e-15 Score=130.01 Aligned_cols=170 Identities=9% Similarity=0.004 Sum_probs=78.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCC
Q 048766 307 ALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383 (525)
Q Consensus 307 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 383 (525)
.+...+...|++++|...++.+. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+...+...|
T Consensus 62 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 62 NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLE 139 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhc
Confidence 33333444444444444443332 1233344444445555555555555555554421 123344444444455555
Q ss_pred CCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHH
Q 048766 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISA 461 (525)
Q Consensus 384 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 461 (525)
+ +++|.+.++++.+. .+.+...+..++..|.+.|++++|...++++ . .+.+...+..++..+...|++++|...+
T Consensus 140 ~-~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 140 Q-PKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp C-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred c-HHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 5 55555555554432 1223444444555555555555555555543 1 1122344455555555555555555555
Q ss_pred HHHHhhcCCChhHHHHHHHH
Q 048766 462 AEVIKLEGDSDYVYVMLCNL 481 (525)
Q Consensus 462 ~~~~~~~p~~~~~~~~l~~~ 481 (525)
+++++..|+++.++..++.+
T Consensus 217 ~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 217 DKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHccCcchHHHHHHHHHH
Confidence 55555555555555544443
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=8.3e-15 Score=128.70 Aligned_cols=200 Identities=9% Similarity=0.049 Sum_probs=157.1
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHH
Q 048766 300 ASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376 (525)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 376 (525)
.....+..+...+...|++++|...|+++. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHH
Confidence 345566677788888999999999998886 3466788889999999999999999999999842 33578888889
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCCh
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDL 454 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~ 454 (525)
..+...|+ +++|.++++++.+. .+.+...+..++..|.+.|++++|...++++ . .+.+...+..++..+...|++
T Consensus 99 ~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEM-YKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcc-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 99999999 99999999999864 2446788899999999999999999999987 2 234577888899999999999
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 455 DVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 455 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
++|+..++++++..|+++.++..++.++...|++++|...++++.+..+.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 99999999999999999999999999999999999999999999887553
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=2e-14 Score=120.30 Aligned_cols=166 Identities=13% Similarity=0.050 Sum_probs=142.1
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHH
Q 048766 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410 (525)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 410 (525)
+...|..+...|...|++++|++.|++..+ ..| +...+..+...+...|+ +++|...++..... .+.+...+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~-~~~a~~~~~~~~~~--~~~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK---ADPNNVETLLKLGKTYMDIGL-PNDAIESLKKFVVL--DTTSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhc--CchhHHHHH
Confidence 556788889999999999999999999888 566 46778888888889998 99999999888753 233566777
Q ss_pred HHHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccCh
Q 048766 411 SMIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW 488 (525)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 488 (525)
.++..+...++++.|...+++. . .+.+...+..++..+...|++++|++.|+++++.+|+++.++..++.+|.+.|++
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 8888889999999999999886 2 2344677888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCC
Q 048766 489 DVASVMRNFMRERGL 503 (525)
Q Consensus 489 ~~A~~~~~~~~~~~~ 503 (525)
++|+..|++..+..+
T Consensus 158 ~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 158 DEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999999987654
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=1.2e-13 Score=121.96 Aligned_cols=202 Identities=14% Similarity=0.030 Sum_probs=145.0
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcC
Q 048766 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNG 347 (525)
Q Consensus 271 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 347 (525)
..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|.+.++++. +.+...+..+...+...|
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh
Confidence 333334444444444444444444433 3344555666666667777777777776654 335567777788888888
Q ss_pred ChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHH
Q 048766 348 DLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426 (525)
Q Consensus 348 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 426 (525)
++++|++.++++.+.+ ..| +...+..+...+...|+ +++|.+.++++.+. .+.+...+..++..|...|++++|.
T Consensus 120 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDT-LYPERSRVFENLGLVSLQMKK-PAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp CHHHHHHHHHHHTTCT-TCTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCc-cCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888887733 445 45667777888888888 99999999888764 2335778888999999999999999
Q ss_pred HHHHHh-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHH
Q 048766 427 RMIREL-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477 (525)
Q Consensus 427 ~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 477 (525)
..++++ ... .+...+..+...+...|++++|.+.++++++..|+++.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999987 333 446677788888899999999999999999999988776543
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=3.1e-14 Score=127.43 Aligned_cols=229 Identities=8% Similarity=-0.025 Sum_probs=188.2
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC--CCH----hHHHHHHH
Q 048766 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR--KNL----VTWNAMIT 341 (525)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~ 341 (525)
..+......+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...++.+.. ++. .+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566778889999999999999999876 44566788888999999999999999998864 232 34888999
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhcc
Q 048766 342 GYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQK 419 (525)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 419 (525)
.+...|++++|++.+++..+ ..| +...+..+...+...|+ +++|.+.+++..+ ..| +...+..++..+...
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVD---RDTTRLDMYGQIGSYFYNKGN-FPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHHHHHHHHHTTC-HHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcccHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHccC-HHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999998 445 46788899999999999 9999999999985 344 567777888344455
Q ss_pred CChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCC---hHHHHHHHHHHHhhc---CCC-----hhHHHHHHHHHhhcc
Q 048766 420 GEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSD---LDVARISAAEVIKLE---GDS-----DYVYVMLCNLYTSHG 486 (525)
Q Consensus 420 g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g 486 (525)
+++++|.+.++++ ...|+ ...+..++..+...|+ +++|+..++++++.. |+. ..++..++.+|...|
T Consensus 156 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 6999999999987 33344 6677778888877787 899999999999876 532 257889999999999
Q ss_pred ChhHHHHHHHHHHHcCCc
Q 048766 487 NWDVASVMRNFMRERGLR 504 (525)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~ 504 (525)
++++|...++++.+..+.
T Consensus 236 ~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 236 DKVKADAAWKNILALDPT 253 (272)
T ss_dssp CHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHhcCcc
Confidence 999999999999987654
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=1.8e-14 Score=123.86 Aligned_cols=182 Identities=14% Similarity=0.021 Sum_probs=102.2
Q ss_pred HhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhc------
Q 048766 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARN------ 346 (525)
Q Consensus 276 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~------ 346 (525)
.+...|++++|...++...+.. +.+...+..+..++.+.|++++|...+++.. +.+...+..+...+...
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~ 92 (217)
T 2pl2_A 14 QLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAED 92 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhh
Confidence 3333333333333333333332 3334444444555555555555555555443 22344555555555555
Q ss_pred -----CChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccC
Q 048766 347 -----GDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420 (525)
Q Consensus 347 -----~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 420 (525)
|++++|+..+++..+ ..|+ ...+..+...+...|+ +++|++.|+++.+. . .++..+..++.+|...|
T Consensus 93 ~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g 165 (217)
T 2pl2_A 93 RERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGE-RDKAEASLKQALAL-E--DTPEIRSALAELYLSMG 165 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHT
T ss_pred hcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcC
Confidence 778888888887777 4554 5666677777777777 88888888887765 3 56777777888888888
Q ss_pred ChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 421 EVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 421 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
++++|+..++++ ...| +...+..+...+...|++++|+..++++.
T Consensus 166 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 166 RLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888888888776 2233 45667777777788888888888777653
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.62 E-value=1.1e-14 Score=140.77 Aligned_cols=207 Identities=8% Similarity=-0.082 Sum_probs=174.0
Q ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCH-HHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHH
Q 048766 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV-EIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQ 358 (525)
Q Consensus 283 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 358 (525)
++++...+....... +.+...+..+..++...|++ ++|++.|++.. +.+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444443332 44667777788888888888 88888888775 34577899999999999999999999999
Q ss_pred HhhCCCCCCCHhHHHHHHHHHcCC---------CCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhcc--------C
Q 048766 359 LKTVRDLQPDSVTFLNVLAACSHT---------DIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQK--------G 420 (525)
Q Consensus 359 ~~~~~~~~p~~~~~~~l~~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--------g 420 (525)
..+ ..|+...+..+...+... |+ +++|.+.++++.+. .| +...|..++.+|... |
T Consensus 163 al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 163 ALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRH-VMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHH-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHh---hCCCHHHHHHHHHHHHHhccCChhhhhhh-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccc
Confidence 998 678888888899999998 88 99999999999864 44 578899999999998 9
Q ss_pred ChHHHHHHHHHh-CCCC----chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHH
Q 048766 421 EVWRAQRMIREL-GFGS----YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 421 ~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (525)
++++|+..|++. ...| +...|..++..+...|++++|++.|+++++++|+++.++..++.++...|++++|++.+
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987 4345 57889999999999999999999999999999999999999999999999999999765
Q ss_pred HH
Q 048766 496 NF 497 (525)
Q Consensus 496 ~~ 497 (525)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 55
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=3.6e-16 Score=155.34 Aligned_cols=146 Identities=10% Similarity=0.088 Sum_probs=117.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhcCC-------CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 048766 202 ISYNEVINGIAQFGDIEDAIMILSSMP-------SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274 (525)
Q Consensus 202 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 274 (525)
.+|+++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 478888999999999999999986643 5999999999999999999999999999999999999999999999
Q ss_pred HHhccccch-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCC-----CHhHHHHHHHHHHhcC
Q 048766 275 SGIAGLSAL-TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK-----NLVTWNAMITGYARNG 347 (525)
Q Consensus 275 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~ 347 (525)
.++++.|+. +.|..++++|.+.|+.||..+|++++..+.+.+-++.+.++...+..+ ...+...|.+.|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 789999999999999999999999987766654444443333222211 1234444555555544
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=3.4e-13 Score=120.69 Aligned_cols=225 Identities=10% Similarity=-0.010 Sum_probs=183.9
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcc----ccchHHHHHHHHHHHHhCCCchHHHHH
Q 048766 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG----LSALTWGMLIHSCVIKQGLDASIVVAS 306 (525)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 306 (525)
+..++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4456677778888888889999888888873 355667777777887 888999999998888876 566777
Q ss_pred HHHHHHHc----CCCHHHHHHHHHhcc-CCCHhHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCCHhHHHHHHH
Q 048766 307 ALLDMYSK----CGQVEIADSMFRSLC-RKNLVTWNAMITGYAR----NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377 (525)
Q Consensus 307 ~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 377 (525)
.+..+|.. .+++++|...|++.. ..+..++..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~ 154 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHHHHH
Confidence 88888888 999999999998886 3467788889999998 999999999999999844 4556666767
Q ss_pred HHcC----CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhc----cCChHHHHHHHHHh-CCCCchhHHHHHHHHH
Q 048766 378 ACSH----TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ----KGEVWRAQRMIREL-GFGSYGVVWRALLSAS 448 (525)
Q Consensus 378 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~ 448 (525)
.+.. .++ +++|.+.+++..+. .++..+..+...|.. .+++++|+..+++. ... +...+..+...+
T Consensus 155 ~~~~~~~~~~~-~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKD-LKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCC-HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHcCCCCCCC-HHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 7766 787 99999999998764 356778889999999 99999999999987 322 367778888888
Q ss_pred hc----CCChHHHHHHHHHHHhhcCCC
Q 048766 449 GA----CSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 449 ~~----~~~~~~A~~~~~~~~~~~p~~ 471 (525)
.. .+++++|++.++++.+.+|++
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 88 999999999999999999844
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=1.6e-11 Score=122.02 Aligned_cols=429 Identities=9% Similarity=0.051 Sum_probs=286.1
Q ss_pred hhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCC---hHHHHHHH
Q 048766 19 DTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGK---YRKALNLF 92 (525)
Q Consensus 19 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~---~~~A~~~~ 92 (525)
..+....++..+..+ +-|...|..++..+.+.+.++.+..+|+.+.. .+...|...+..-.+.++ ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 344455667776666 78999999999999999999999999998876 345578888888888888 99999999
Q ss_pred HHHHhcC-CCCCHhhHHHHHHHHcccCCh--------HHHHHHHHHHHH-ccc-CC-CcchhhHHHHHHHh---------
Q 048766 93 VELERSE-IYADAYSFTSALAACGQLGSL--------QLGMAIHSKIVK-YSL-ER-GVVIANCLIDMYGK--------- 151 (525)
Q Consensus 93 ~~m~~~~-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~--------- 151 (525)
++..... ..|+...|...+....+.++. +.+.++|+..+. .|. .+ +..+|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998753 138888888877766555443 334577776654 355 44 34677777765442
Q ss_pred cCCHHHHHHHHhhccCCCh----hhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhc-
Q 048766 152 CGSVEDAIGVFGEMIDKDI----ISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS- 226 (525)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~- 226 (525)
.++.+.+..+|+..+.-.. ..|......-...+. ..+.+++.+. ..+++.|...+.+
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-----------------~~~y~~Ar~~~~e~ 268 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-----------------SAQYMNARSLYQDW 268 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-----------------hHHHHHHHHHHHHH
Confidence 3456778889988865211 122221111000010 0111111110 0111122222211
Q ss_pred ------CCC--------------C--C------cccHHHHHHHHHhcC-------ChhHHHHHHHHHhhCCCCCCHHHHH
Q 048766 227 ------MPS--------------P--N------SSSWNSILTGYVNRN-------RVPEALHLFGEMQSKDVPMDEYTFS 271 (525)
Q Consensus 227 ------~~~--------------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~ 271 (525)
+.+ | + ...|...+..--..+ ..+.+..+|++.+.. ++-....|.
T Consensus 269 ~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~ 347 (679)
T 4e6h_A 269 LNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWF 347 (679)
T ss_dssp HHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHH
T ss_pred HHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHH
Confidence 110 0 0 123444444333322 123456678887765 455777888
Q ss_pred HHHHHhccccchHHHH-HHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC-------------CC-----
Q 048766 272 TMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR-------------KN----- 332 (525)
Q Consensus 272 ~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~----- 332 (525)
..+.-+...|+.+.|. .+++...... |.+...+...+....+.|+++.|.++|+.+.. |+
T Consensus 348 ~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~ 426 (679)
T 4e6h_A 348 NMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI 426 (679)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence 8888888888888896 9999998754 56777788888889999999999999988763 21
Q ss_pred -------HhHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC
Q 048766 333 -------LVTWNAMITGYARNGDLTKVIELFEQLKTV-RDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404 (525)
Q Consensus 333 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 404 (525)
...|...+....+.|+.+.|..+|.++.+. + .+....|...+..-.+.+++.+.|.++|+...+. .+.
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~--~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~ 502 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK--LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG--GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTT
T ss_pred hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCC
Confidence 236888888888899999999999999885 2 1223334333333223332289999999999875 344
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC----chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS----YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
++..+...++.....|+.+.|..+|++. ...| ....|..++..-.+.|+.+.+..+.+++.+..|+++
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 5667778888888999999999999997 3333 346788888888889999999999999999999764
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=2.1e-13 Score=118.01 Aligned_cols=205 Identities=10% Similarity=-0.043 Sum_probs=150.4
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHh
Q 048766 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYAR 345 (525)
Q Consensus 269 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 345 (525)
.+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.++.+. +.+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34444445555555555555555555443 3345566666777777777777777777664 3456677788888888
Q ss_pred c-CChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChH
Q 048766 346 N-GDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW 423 (525)
Q Consensus 346 ~-~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 423 (525)
. |++++|+..++++.+.+ ..|+ ...+..+...+...|+ +++|.+.++++.+. .+.+...+..++..|.+.|+++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADP-TYPTPYIANLNKGICSAKQGQ-FGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp TTCCHHHHHHHHHHHHTST-TCSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHH
T ss_pred hcCcHHHHHHHHHHHHcCc-CCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHH
Confidence 8 99999999999888733 3443 5677788888888898 99999999988764 2335778888999999999999
Q ss_pred HHHHHHHHh-CCC--CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHH
Q 048766 424 RAQRMIREL-GFG--SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 424 ~A~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 478 (525)
+|...++++ ... .+...+..+...+...|+.+.|...++.+.+..|+++.....+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999886 222 3456667777778889999999999999999999888776544
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=1.9e-14 Score=137.32 Aligned_cols=265 Identities=10% Similarity=-0.023 Sum_probs=193.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----HHHHHHHHHhccccchHHHHHHHHHHHHh----C-CCchHHHH
Q 048766 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE----YTFSTMLSGIAGLSALTWGMLIHSCVIKQ----G-LDASIVVA 305 (525)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 305 (525)
+..+...+...|++++|...|+++.+.+ +.+. ..+..+...+...|++++|...++++.+. + .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3445566777788888888888777652 2222 35666777777788888888877776553 1 12345667
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhccCC---------CHhHHHHHHHHHHhcCC-----------------hhHHHHHHHHH
Q 048766 306 SALLDMYSKCGQVEIADSMFRSLCRK---------NLVTWNAMITGYARNGD-----------------LTKVIELFEQL 359 (525)
Q Consensus 306 ~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~ 359 (525)
..+...|...|++++|...+++.... ...++..+...|...|+ +++|++.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 77888888888888888888776421 23467778888888888 88888888876
Q ss_pred hhCCC---CCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHHHHHH
Q 048766 360 KTVRD---LQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQRMIRE 431 (525)
Q Consensus 360 ~~~~~---~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (525)
.+... ..| ...++..+...+...|+ +++|.+.+++..+...-.++ ...+..++..|...|++++|...+++
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGD-FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 55210 112 23467778888888998 99999999888754211112 23678889999999999999999987
Q ss_pred h----C-CC---CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC------ChhHHHHHHHHHhhccChhHHHHHHHH
Q 048766 432 L----G-FG---SYGVVWRALLSASGACSDLDVARISAAEVIKLEGD------SDYVYVMLCNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 432 ~----~-~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (525)
. + .. .....+..++..+...|++++|...++++++..+. ...++..++.+|...|++++|..++++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6 1 11 11456778888999999999999999999987532 245788999999999999999999998
Q ss_pred HHHc
Q 048766 498 MRER 501 (525)
Q Consensus 498 ~~~~ 501 (525)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8664
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=3.1e-14 Score=127.60 Aligned_cols=220 Identities=12% Similarity=0.027 Sum_probs=182.1
Q ss_pred hccccchHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChh
Q 048766 277 IAGLSALTWGMLIHSCVIKQGL---DASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLT 350 (525)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 350 (525)
....|++++|...++.+.+... +.+..++..+..++...|++++|...|+++. +.+..+|..+...+...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 4466899999999999988642 2356788899999999999999999999986 456789999999999999999
Q ss_pred HHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHH
Q 048766 351 KVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429 (525)
Q Consensus 351 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (525)
+|+..++++.+ ..| +...+..+...+...|+ +++|.+.++++.+. .|+..........+...|++++|...+
T Consensus 95 ~A~~~~~~al~---~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 95 AAYEAFDSVLE---LDPTYNYAHLNRGIALYYGGR-DKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp HHHHHHHHHHH---HCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHh---cCccccHHHHHHHHHHHHhcc-HHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999 455 57788899999999999 99999999999854 565555555556667789999999999
Q ss_pred HHh-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC----ChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 430 REL-GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD----SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 430 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
++. ...|+......++..+...++.++|+..++++++..|. ++.++..++.+|...|++++|...++++.+..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 168 KQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 776 22233333344777778888999999999999987763 378899999999999999999999999988754
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=3.6e-14 Score=135.05 Aligned_cols=127 Identities=14% Similarity=-0.063 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHHHHHHh----CCCCc----hh
Q 048766 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSY----GV 439 (525)
Q Consensus 372 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~ 439 (525)
+..+...+...|+ +++|.+.+++..+...-.++ ...+..++..|...|++++|...+++. +..++ ..
T Consensus 190 ~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 190 FGNLGNTHYLLGN-FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHTB-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHccC-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 3444444444444 55555555444332111111 123444445555555555555555443 00000 22
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC------hhHHHHHHHHHhhccChhHHHHHHHHHH
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKLEGDS------DYVYVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
++..++..+...|++++|...++++++..+.. ..++..++.+|...|++++|..++++..
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444555555555555555555443211 3344455555555555555555555443
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=6.1e-14 Score=129.59 Aligned_cols=266 Identities=12% Similarity=0.006 Sum_probs=195.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC----HHHHHHHHHHhccccchHHHHHHHHHHHHh----CCC-chHHHH
Q 048766 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMD----EYTFSTMLSGIAGLSALTWGMLIHSCVIKQ----GLD-ASIVVA 305 (525)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 305 (525)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+....+. +.+ ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3445566777888888888888877653 222 245666777777888888888887776543 212 235567
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHhcCC--------------------hhHHHHHH
Q 048766 306 SALLDMYSKCGQVEIADSMFRSLCR-----KN----LVTWNAMITGYARNGD--------------------LTKVIELF 356 (525)
Q Consensus 306 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 356 (525)
..+...+...|++++|...+++... ++ ..++..+...+...|+ +++|++.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7788888899999999888887641 22 2367778888888888 89999888
Q ss_pred HHHhhCCC---CCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHHH
Q 048766 357 EQLKTVRD---LQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQRM 428 (525)
Q Consensus 357 ~~~~~~~~---~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 428 (525)
++...... ..| ....+..+...+...|+ +++|.+.+++..+...-.++ ...+..++..|...|++++|...
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGN-FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 87654210 112 13467777788888898 99999999988753211122 33778889999999999999999
Q ss_pred HHHh----CCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC------hhHHHHHHHHHhhccChhHHHHH
Q 048766 429 IREL----GFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGDS------DYVYVMLCNLYTSHGNWDVASVM 494 (525)
Q Consensus 429 ~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~ 494 (525)
+++. +..++ ...+..++..+...|++++|...++++++..|.. ..++..++.+|...|++++|..+
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9876 11111 4567778889999999999999999999876422 45788999999999999999999
Q ss_pred HHHHHHcC
Q 048766 495 RNFMRERG 502 (525)
Q Consensus 495 ~~~~~~~~ 502 (525)
+++..+..
T Consensus 326 ~~~a~~~~ 333 (338)
T 3ro2_A 326 AEKHLEIS 333 (338)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99988754
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=2.7e-14 Score=135.96 Aligned_cols=255 Identities=12% Similarity=0.038 Sum_probs=164.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHHHHHHHHHHhccccchHHHHHHHHHHHHhC----CC-chHHH
Q 048766 235 WNSILTGYVNRNRVPEALHLFGEMQSK----DVPM-DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG----LD-ASIVV 304 (525)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~ 304 (525)
+..+...+...|++++|...+++.... +..| ...++..+...+...|++++|...+....+.. .+ ....+
T Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 129 (406)
T 3sf4_A 50 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 444445555555555555555543321 1111 12334444555555556666555555544321 01 11335
Q ss_pred HHHHHHHHHcCCC--------------------HHHHHHHHHhccC-----C----CHhHHHHHHHHHHhcCChhHHHHH
Q 048766 305 ASALLDMYSKCGQ--------------------VEIADSMFRSLCR-----K----NLVTWNAMITGYARNGDLTKVIEL 355 (525)
Q Consensus 305 ~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~ 355 (525)
+..+...|...|+ ++.|...+++... . ...++..+...|...|++++|+..
T Consensus 130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 5566666666677 6667666665531 1 123677778888888999999988
Q ss_pred HHHHhhCCCCCCC----HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHH
Q 048766 356 FEQLKTVRDLQPD----SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQR 427 (525)
Q Consensus 356 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 427 (525)
+++..+.....++ ..++..+...+...|+ +++|...+++..+...-.++ ..++..++..|...|++++|..
T Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 8887653101122 2367778888888898 99999999887653211112 5577888999999999999999
Q ss_pred HHHHh----CCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc------CCChhHHHHHHHHHhhccChhH
Q 048766 428 MIREL----GFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLE------GDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 428 ~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
.+++. +..++ ..++..++..+...|++++|...++++++.. |....++..++.++...|+...
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99876 11111 4567788899999999999999999999874 3335678889999999987743
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.54 E-value=3.2e-11 Score=119.83 Aligned_cols=416 Identities=8% Similarity=0.005 Sum_probs=261.2
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCC---hHHHHHHHHHHHHcc-cCCCcchh
Q 048766 67 PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS---LQLGMAIHSKIVKYS-LERGVVIA 142 (525)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~ 142 (525)
.|...|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.++ .+.+..+|+..+... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 46677888888887788888888888888775 34556667777777777777 888888888877653 13677777
Q ss_pred hHHHHHHHhcCCH--------HHHHHHHhhcc------CC-ChhhHHHHHHHHHh---------CCChHHHHHHHhcCCC
Q 048766 143 NCLIDMYGKCGSV--------EDAIGVFGEMI------DK-DIISWNSVIAASAR---------NGNLELAFGFLHRLPN 198 (525)
Q Consensus 143 ~~l~~~~~~~g~~--------~~a~~~~~~~~------~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~ 198 (525)
...+....+.++. +...++|+... .+ +...|...+..... .++.+.+..+|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7776655554443 22335555532 22 23455555544332 2234556666666532
Q ss_pred -CCc---chHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhh--CCC----C----
Q 048766 199 -PDT---ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS--KDV----P---- 264 (525)
Q Consensus 199 -~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~----~---- 264 (525)
|.. .+|......-...+ ...+.+++.+ ...+++.|...+.++.. .++ +
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVN-QLTARRHIGE-----------------LSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred CccHHHHHHHHHHHHHHHhcC-cchHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 211 12211111100000 0001111110 11233444444444321 011 1
Q ss_pred -------C-----CH---HHHHHHHHHhcccc-------chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHH
Q 048766 265 -------M-----DE---YTFSTMLSGIAGLS-------ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322 (525)
Q Consensus 265 -------~-----~~---~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 322 (525)
| +. ..|...+.---..+ ..+.+..+|++++... +....+|...+..+...|+.+.|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 11 22333332221211 1334567788887764 557788888888888899998996
Q ss_pred -HHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCC--------CCCCC------------HhHHHHHHHH
Q 048766 323 -SMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR--------DLQPD------------SVTFLNVLAA 378 (525)
Q Consensus 323 -~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~p~------------~~~~~~l~~~ 378 (525)
.+++... +.+...|-..+....+.|+++.|.++|+++.+.. .-.|+ ...|...+..
T Consensus 364 r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 364 TKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9998876 4466677888888889999999999999988631 00142 2357777777
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhcc-CChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK-GEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLD 455 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 455 (525)
..+.|+ .+.|.++|..+.+. .-......|...+..-.+. ++++.|.++|+.. ..+.+...|..++......|+.+
T Consensus 444 erR~~~-l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQG-LAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHC-HHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCC-HHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH
Confidence 777788 99999999999763 1122344454444444454 4599999999986 32334566777888778889999
Q ss_pred HHHHHHHHHHhhcCC---ChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 456 VARISAAEVIKLEGD---SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 456 ~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
.|..+|++++...|+ ....|..++..-...|+.+.+..+.+++.+..+.
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999998873 4567888888889999999999999999988764
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=3.5e-13 Score=127.11 Aligned_cols=227 Identities=10% Similarity=0.010 Sum_probs=159.0
Q ss_pred HHHHhccccchHHHHHHHHHHHHh----CCCc-hHHHHHHHHHHHHcCCCHHHHHHHHHhccC-----CC-----HhHHH
Q 048766 273 MLSGIAGLSALTWGMLIHSCVIKQ----GLDA-SIVVASALLDMYSKCGQVEIADSMFRSLCR-----KN-----LVTWN 337 (525)
Q Consensus 273 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 337 (525)
....+...|++++|...+....+. +.++ ...++..+..+|...|+++.|...+++... ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334455666777777777666553 1111 345667777778888888888777776641 11 23677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCC----HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh---CC-CCChhHH
Q 048766 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPD----SVTFLNVLAACSHTDIPFDKVSEYFESMTKDY---GI-KPTVEHC 409 (525)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~ 409 (525)
.+...|...|++++|++.+++..+.....++ ..++..+...+...|+ +++|.+.+++..+.. +. +....++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ-YEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 7888888899999999888887653101112 2467778888888898 999999988877521 11 2235678
Q ss_pred HHHHHHHhccCChHHHHHHHHHh----C--CCCc-hhHHHHHHHHHhcCCC---hHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL----G--FGSY-GVVWRALLSASGACSD---LDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~----~--~~~~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
..++..|.+.|++++|...+++. . ..|. ...+..+...+...|+ +++|+..+++. ...|.....+..++
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la 346 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 88899999999999999999875 1 1222 2335667778888888 77777777776 33344566788999
Q ss_pred HHHhhccChhHHHHHHHHHHHc
Q 048766 480 NLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.+|...|++++|..++++..+.
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=1.3e-13 Score=131.59 Aligned_cols=234 Identities=12% Similarity=0.024 Sum_probs=149.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CCCHHHHHHHHHHhccccchHHHHHHHHHHHHh----C-CCchHHH
Q 048766 235 WNSILTGYVNRNRVPEALHLFGEMQSK----DV-PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ----G-LDASIVV 304 (525)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 304 (525)
|..+...|...|++++|...+++..+. +. +.....+..+...+...|++++|...+.++.+. + .+....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 334444444444444444444443321 10 111233444445555555555555555554432 1 1223345
Q ss_pred HHHHHHHHHcCCC-----------------HHHHHHHHHhccC-----C----CHhHHHHHHHHHHhcCChhHHHHHHHH
Q 048766 305 ASALLDMYSKCGQ-----------------VEIADSMFRSLCR-----K----NLVTWNAMITGYARNGDLTKVIELFEQ 358 (525)
Q Consensus 305 ~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 358 (525)
+..+...|...|+ ++.|.+.+++... . ...++..+...|...|++++|+..+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5666666777777 6777666665531 1 123677788888889999999999888
Q ss_pred HhhCCCCCCC----HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC----ChhHHHHHHHHHhccCChHHHHHHHH
Q 048766 359 LKTVRDLQPD----SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP----TVEHCCSMIRLMGQKGEVWRAQRMIR 430 (525)
Q Consensus 359 ~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (525)
..+.....++ ...+..+...+...|+ +++|.+.+++..+...-.. ....+..++..|...|++++|...++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQ-FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7762100112 2367788888899998 9999999988765421111 15677888999999999999999998
Q ss_pred Hh-------CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 431 EL-------GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 431 ~~-------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
+. +..+ ....+..+...+...|++++|...+++++++.+
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 76 1111 134677888999999999999999999999876
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=6.3e-13 Score=111.08 Aligned_cols=166 Identities=11% Similarity=0.033 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHH
Q 048766 301 SIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVL 376 (525)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 376 (525)
+..+|..+...|.+.|++++|.+.|++.. +.+..+|..+...|.+.|++++|+..+++... ..| +...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHHHH
Confidence 45677888888888899999998888876 44677888899999999999999999999888 445 456666777
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCCh
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDL 454 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~ 454 (525)
..+...++ ++.+.+.+.+..+. .+.+...+..++..|.+.|++++|++.|++. ... .+..+|..++..+.+.|++
T Consensus 81 ~~~~~~~~-~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDE-KQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCC-HHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 77888888 99999999988753 2345778889999999999999999999987 333 4467889999999999999
Q ss_pred HHHHHHHHHHHhhcCCCh
Q 048766 455 DVARISAAEVIKLEGDSD 472 (525)
Q Consensus 455 ~~A~~~~~~~~~~~p~~~ 472 (525)
++|++.|+++++.+|+++
T Consensus 158 ~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhCCccCH
Confidence 999999999999999654
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=2.9e-12 Score=116.69 Aligned_cols=217 Identities=10% Similarity=0.056 Sum_probs=111.9
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHhcc-------ccch-------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHc
Q 048766 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAG-------LSAL-------TWGMLIHSCVIKQGLDASIVVASALLDMYSK 314 (525)
Q Consensus 249 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (525)
++|..+|++..... +-+...|..++..+.. .|++ ++|..++++..+.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777666542 3445555555555432 3443 5666666666553113344455556666666
Q ss_pred CCCHHHHHHHHHhccC--C-CHh-HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHH-cCCCCCcchH
Q 048766 315 CGQVEIADSMFRSLCR--K-NLV-TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC-SHTDIPFDKV 389 (525)
Q Consensus 315 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~a 389 (525)
.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+ +++|
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~-~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKD-KSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCC-HHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCC-HHHH
Confidence 6666666666665542 2 222 55555555556666666666666665522 11222332222221 12354 5666
Q ss_pred HHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-C---CCCc--hhHHHHHHHHHhcCCChHHHHHHHHH
Q 048766 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-G---FGSY--GVVWRALLSASGACSDLDVARISAAE 463 (525)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~ 463 (525)
.++|++..+.. +.++..|..++..+.+.|++++|..+|++. . .+|+ ...|..++....+.|+.+.|..++++
T Consensus 189 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666555431 223455555555555556666666666554 1 1332 33455555555555666666666666
Q ss_pred HHhhcCCC
Q 048766 464 VIKLEGDS 471 (525)
Q Consensus 464 ~~~~~p~~ 471 (525)
+++..|++
T Consensus 267 a~~~~p~~ 274 (308)
T 2ond_A 267 RFTAFREE 274 (308)
T ss_dssp HHHHTTTT
T ss_pred HHHHcccc
Confidence 66655543
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.49 E-value=5.9e-13 Score=133.84 Aligned_cols=163 Identities=12% Similarity=0.125 Sum_probs=141.1
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHH
Q 048766 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHC 409 (525)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 409 (525)
+..+|+.+...|.+.|++++|++.|++..+ +.|+ ...+..+..++.+.|+ +++|++.|+++.+. .| +...|
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~---l~P~~~~a~~nLg~~l~~~g~-~~eA~~~~~~Al~l---~P~~~~a~ 80 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGK-LQEALMHYKEAIRI---SPTFADAY 80 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH---CTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHH
Confidence 345788888888899999999999999888 6675 6778888888888998 99999999988853 55 47788
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccC
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 487 (525)
..++.+|.+.|++++|++.|++. ...|+ ...+..++..+...|++++|++.|+++++++|+++.++..++.++...|+
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 88999999999999999999886 33444 67889999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHc
Q 048766 488 WDVASVMRNFMRER 501 (525)
Q Consensus 488 ~~~A~~~~~~~~~~ 501 (525)
+++|.+.++++.+.
T Consensus 161 ~~~A~~~~~kal~l 174 (723)
T 4gyw_A 161 WTDYDERMKKLVSI 174 (723)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988663
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.49 E-value=9.5e-13 Score=109.99 Aligned_cols=165 Identities=17% Similarity=0.021 Sum_probs=130.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 414 (525)
.+..+...+...|++++|+..++++.+.. +.+...+..+...+...|+ +++|.++++++.+. .+.+...+..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 84 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGA-VDRGTELLERSLAD--APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 45566677777788888888888777632 2356667777777777887 88888888887753 2335677778888
Q ss_pred HHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHH
Q 048766 415 LMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVAS 492 (525)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 492 (525)
.+...|++++|.+.++++ ..+.+...+..++..+...|++++|...++++++..|+++.++..++.++...|++++|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888876 223456778888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCc
Q 048766 493 VMRNFMRERGLR 504 (525)
Q Consensus 493 ~~~~~~~~~~~~ 504 (525)
..++++.+..+.
T Consensus 165 ~~~~~~~~~~~~ 176 (186)
T 3as5_A 165 PHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHcCCC
Confidence 999998876543
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=126.14 Aligned_cols=238 Identities=12% Similarity=0.135 Sum_probs=127.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 048766 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313 (525)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (525)
++..+...+...|++++|..+++++.+... .......+....++..+...|.
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------------------~~~~~~~~~~~~~~~~la~~~~ 80 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLE----------------------------KTSGHDHPDVATMLNILALVYR 80 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------HHHCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------------------------HHcCCCCHHHHHHHHHHHHHHH
Confidence 456666667777777777777766654200 0000011222333444444444
Q ss_pred cCCCHHHHHHHHHhccC-------C----CHhHHHHHHHHHHhcCChhHHHHHHHHHhhC------CCCCC-CHhHHHHH
Q 048766 314 KCGQVEIADSMFRSLCR-------K----NLVTWNAMITGYARNGDLTKVIELFEQLKTV------RDLQP-DSVTFLNV 375 (525)
Q Consensus 314 ~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~p-~~~~~~~l 375 (525)
..|++++|...+++... + ...++..+...|...|++++|+..++++.+. + ..| ....+..+
T Consensus 81 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l 159 (311)
T 3nf1_A 81 DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-DHPDVAKQLNNL 159 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 45555555444444321 0 1234555556666666666666666665542 1 122 23455666
Q ss_pred HHHHcCCCCCcchHHHHHHHhhhhh-----CCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-C---------CCCc--
Q 048766 376 LAACSHTDIPFDKVSEYFESMTKDY-----GIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-G---------FGSY-- 437 (525)
Q Consensus 376 ~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~~~-- 437 (525)
...+...|+ +++|.++++++.+.. +..| ....+..++..|...|++++|...++++ . ..+.
T Consensus 160 a~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 160 ALLCQNQGK-YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHTTTC-HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 666777776 777777777665421 0012 2445666777777777777777777764 1 1111
Q ss_pred -----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 438 -----GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 438 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
...+......+...+.+.++...++++....|..+.++..++.+|.+.|++++|..++++..+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1122223334445667777788888888888888888999999999999999999999988764
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=1.3e-11 Score=112.43 Aligned_cols=214 Identities=8% Similarity=0.035 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHH-------cCCCH-------HHHHHHHHhccC---C-CHhHHHHHHHHHHh
Q 048766 284 TWGMLIHSCVIKQGLDASIVVASALLDMYS-------KCGQV-------EIADSMFRSLCR---K-NLVTWNAMITGYAR 345 (525)
Q Consensus 284 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 345 (525)
++|...|+++.+.. +.++.+|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888887765 566777777777665 35775 889999988763 2 45688888999999
Q ss_pred cCChhHHHHHHHHHhhCCCCCCCH-h-HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHh-ccCCh
Q 048766 346 NGDLTKVIELFEQLKTVRDLQPDS-V-TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG-QKGEV 422 (525)
Q Consensus 346 ~~~~~~a~~~~~~~~~~~~~~p~~-~-~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~ 422 (525)
.|++++|.++|+++.+ ..|+. . .|..+...+.+.|+ +++|.++|+++.+. .+++...|...+.... ..|++
T Consensus 112 ~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp TTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHC-HHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCH
T ss_pred cCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcC-HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCH
Confidence 9999999999999988 66653 3 68888888888888 99999999998753 1234455544444322 36999
Q ss_pred HHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhh---cCC-ChhHHHHHHHHHhhccChhHHHHHHH
Q 048766 423 WRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKL---EGD-SDYVYVMLCNLYTSHGNWDVASVMRN 496 (525)
Q Consensus 423 ~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (525)
++|..+|++. ..+.+...|..++..+.+.|++++|..+|+++++. .|+ +...|..++..+.+.|+.++|..+++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999886 22235677888888888899999999999999985 443 56788888999999999999999999
Q ss_pred HHHHcCCc
Q 048766 497 FMRERGLR 504 (525)
Q Consensus 497 ~~~~~~~~ 504 (525)
++.+..+.
T Consensus 266 ~a~~~~p~ 273 (308)
T 2ond_A 266 RRFTAFRE 273 (308)
T ss_dssp HHHHHTTT
T ss_pred HHHHHccc
Confidence 99887664
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=1.1e-12 Score=121.20 Aligned_cols=201 Identities=12% Similarity=0.042 Sum_probs=125.5
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHHhC----CC-chHHHHHHHHHHHHcCCC--------------------HHHHHH
Q 048766 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQG----LD-ASIVVASALLDMYSKCGQ--------------------VEIADS 323 (525)
Q Consensus 269 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~--------------------~~~A~~ 323 (525)
.+..+...+...|++++|...+.+..+.. .+ ....++..+...+...|+ ++.|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 34444444555555555555555443321 00 112245555556666666 666666
Q ss_pred HHHhccC-----C----CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC----HhHHHHHHHHHcCCCCCcchHH
Q 048766 324 MFRSLCR-----K----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD----SVTFLNVLAACSHTDIPFDKVS 390 (525)
Q Consensus 324 ~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~~a~ 390 (525)
.+++... . ...++..+...+...|++++|+..+++..+.....++ ..++..+...+...|+ +++|.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~ 243 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-FETAS 243 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-HHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-HHHHH
Confidence 6555431 1 1235666777788888888888888877652100111 2366677777888888 88888
Q ss_pred HHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHHHHHHh-------CCCCc-hhHHHHHHHHHhcCCChHHHH
Q 048766 391 EYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQRMIREL-------GFGSY-GVVWRALLSASGACSDLDVAR 458 (525)
Q Consensus 391 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~~A~ 458 (525)
+.+++..+...-.++ ...+..++..|...|++++|...+++. +..+. ..++..+...+...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 888877643211112 456778888899999999999998875 11111 346778888999999999999
Q ss_pred HHHHHHHhhcCC
Q 048766 459 ISAAEVIKLEGD 470 (525)
Q Consensus 459 ~~~~~~~~~~p~ 470 (525)
..+++++++.+.
T Consensus 324 ~~~~~a~~~~~~ 335 (338)
T 3ro2_A 324 HFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHHh
Confidence 999999987763
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=3.4e-12 Score=120.34 Aligned_cols=230 Identities=12% Similarity=-0.017 Sum_probs=175.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCC-CCCC----HHHHHHHHHHhccccchHHHHHHHHHHHHhC--C----CchHHHHH
Q 048766 238 ILTGYVNRNRVPEALHLFGEMQSKD-VPMD----EYTFSTMLSGIAGLSALTWGMLIHSCVIKQG--L----DASIVVAS 306 (525)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 306 (525)
....+...|++++|...|++....- -.++ ..++..+...+...|+++.|...+.+..+.. . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 5566778888999998888887631 1122 3567777788888899999988888876541 1 12245677
Q ss_pred HHHHHHHcCCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCCC-CHhHH
Q 048766 307 ALLDMYSKCGQVEIADSMFRSLCR-----KN----LVTWNAMITGYARNGDLTKVIELFEQLKTV----RDLQP-DSVTF 372 (525)
Q Consensus 307 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~p-~~~~~ 372 (525)
.+..+|...|++++|...+++..+ ++ ..++..+...|...|++++|++.+++..+. + ..| ...++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN-ILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CGGGHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-cchhHHHHH
Confidence 888999999999999999988752 22 237888999999999999999999988762 2 224 35678
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC---hhHHHHHHHHHhccCC---hHHHHHHHHHhCCCCc-hhHHHHHH
Q 048766 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT---VEHCCSMIRLMGQKGE---VWRAQRMIRELGFGSY-GVVWRALL 445 (525)
Q Consensus 373 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~ 445 (525)
..+...+...|+ +++|.+.+++..+...-..+ ...+..+...|...|+ +++|+.++++.+..|+ ...+..++
T Consensus 268 ~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la 346 (383)
T 3ulq_A 268 FLITQIHYKLGK-IDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 888999999999 99999999988754211112 2335678889999999 8999999999854444 44677889
Q ss_pred HHHhcCCChHHHHHHHHHHHhhcC
Q 048766 446 SASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
..|...|++++|...++++++...
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999998763
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.44 E-value=7.4e-11 Score=110.71 Aligned_cols=258 Identities=12% Similarity=-0.027 Sum_probs=119.2
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHH----HHHHHHHHhccccchHHHHHHHHHHHHhCC---Cc--hHHHHHHHHHH
Q 048766 241 GYVNRNRVPEALHLFGEMQSKDVPMDEY----TFSTMLSGIAGLSALTWGMLIHSCVIKQGL---DA--SIVVASALLDM 311 (525)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~ 311 (525)
.+...|++++|...+++........+.. .+..+...+...|++++|...+.+...... .+ ...++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3444555555555555544432111111 233333444455555555555555443210 11 11223344555
Q ss_pred HHcCCCHHHHHHHHHhccC----------C-CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--C--CHhHHHHHH
Q 048766 312 YSKCGQVEIADSMFRSLCR----------K-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ--P--DSVTFLNVL 376 (525)
Q Consensus 312 ~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--p--~~~~~~~l~ 376 (525)
+...|++++|...+++... + ....+..+...+...|++++|...+++..+.. .. | ...++..+.
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL-SSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTSCGGGGHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-hccCcHHHHHHHHHHH
Confidence 5556666666555555431 1 11234445555556666666666666554421 10 0 123344455
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHH-----HHHHHHhccCChHHHHHHHHHh-CCCCc-----hhHHHHHH
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC-----SMIRLMGQKGEVWRAQRMIREL-GFGSY-----GVVWRALL 445 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~ 445 (525)
..+...|+ +++|...+++......-......+. ..+..+...|++++|...+++. ...+. ...+..+.
T Consensus 182 ~~~~~~g~-~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 182 QCSLARGD-LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHTC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHcCC-HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 55555565 6666666655543211111111111 1223345566666666666654 11111 11234455
Q ss_pred HHHhcCCChHHHHHHHHHHHhhcCC------ChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 446 SASGACSDLDVARISAAEVIKLEGD------SDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
..+...|++++|...++++++..+. ...++..++.++...|+.++|...+++..+
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555666666666666666554321 112445556666666666666666655543
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=5.3e-12 Score=109.49 Aligned_cols=189 Identities=8% Similarity=-0.081 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcc---C-CCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHH
Q 048766 302 IVVASALLDMYSKCGQVEIADSMFRSLC---R-KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVL 376 (525)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 376 (525)
+..+......+...|++++|...|+... + ++...+..+..++...|++++|++.+++..+ ..|+ ...+..+.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~ 83 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKS 83 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHH
Confidence 3445555555555555555555555543 1 3444444455555555555555555555555 3443 34444555
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCC-h-------hHHHHHHHHHhccCChHHHHHHHHHh-CCCCc---hhHHHHH
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPT-V-------EHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY---GVVWRAL 444 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l 444 (525)
..+...|+ +++|.+.+++..+. .|+ . ..|..++..+...|++++|++.++++ ...|+ ...+..+
T Consensus 84 ~~~~~~~~-~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKN-NQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHccc-HHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 55555555 55555555555532 222 2 23444444455555555555555544 33333 2333444
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
+..+.. .+...++++..+.+.++..+... .....+.+++|+.++++..+..+.
T Consensus 160 ~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 160 GVLFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC
Confidence 444322 22333444444444333333222 223344459999999999887653
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=1.8e-12 Score=125.32 Aligned_cols=179 Identities=10% Similarity=-0.022 Sum_probs=157.0
Q ss_pred HHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCCh-hHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHH
Q 048766 318 VEIADSMFRSLC---RKNLVTWNAMITGYARNGDL-TKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEY 392 (525)
Q Consensus 318 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~ 392 (525)
++.+.+.++... +.+...+..+...+...|++ ++|++.|++..+ ..|+ ...+..+...+...|+ +++|.+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~-~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK---LEPELVEAWNQLGEVYWKKGD-VTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 455666666554 34677899999999999999 999999999998 5664 7889999999999999 9999999
Q ss_pred HHHhhhhhCCCCChhHHHHHHHHHhcc---------CChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcC--------CC
Q 048766 393 FESMTKDYGIKPTVEHCCSMIRLMGQK---------GEVWRAQRMIREL-GFG-SYGVVWRALLSASGAC--------SD 453 (525)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~--------~~ 453 (525)
|+++. .+.|+...+..++..|... |++++|+..++++ ... .+...|..++.++... |+
T Consensus 160 ~~~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 99998 4578888999999999999 9999999999987 333 3477888899999888 99
Q ss_pred hHHHHHHHHHHHhhcC---CChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 454 LDVARISAAEVIKLEG---DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+++|+..|+++++.+| +++.++..++.+|...|++++|...|++..+..+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999 9999999999999999999999999999988654
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.43 E-value=1.5e-11 Score=106.59 Aligned_cols=206 Identities=12% Similarity=0.041 Sum_probs=162.0
Q ss_pred CCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHH
Q 048766 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMI 340 (525)
Q Consensus 264 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~ 340 (525)
+.|+..+......+...|++++|...+....+...+++...+..+..++...|++++|...+++.. +.+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 346678888889999999999999999999998854677777779999999999999999999986 33556889999
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCC-H-------hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC---hhHH
Q 048766 341 TGYARNGDLTKVIELFEQLKTVRDLQPD-S-------VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT---VEHC 409 (525)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 409 (525)
..|...|++++|+..+++..+ ..|+ . ..|..+...+...|+ +++|++.|+++.+ +.|+ +..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~---~~p~~~~~~~~ 156 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK---AVPGNATIEKLYAIYYLKEGQKFQQAGN-IEKAEENYKHATD---VTSKKWKTDAL 156 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTT---SSCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhHHHHHhcc-HHHHHHHHHHHHh---cCCCcccHHHH
Confidence 999999999999999999998 5564 4 457777788889999 9999999999984 4665 5678
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
..++..|...|+. .++++ .. ..+...+.... ....+.+++|+..++++++++|+++.+...+..+..
T Consensus 157 ~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 157 YSLGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888888766543 33333 11 11223332222 234567999999999999999999988888776653
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=7.3e-13 Score=120.90 Aligned_cols=237 Identities=8% Similarity=0.021 Sum_probs=130.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCCC--------C---CcccHHHHHHHHHhcCChhHHHHHHHHHhhC------CC
Q 048766 201 TISYNEVINGIAQFGDIEDAIMILSSMPS--------P---NSSSWNSILTGYVNRNRVPEALHLFGEMQSK------DV 263 (525)
Q Consensus 201 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~ 263 (525)
..++..+...+...|++++|..+|+++.+ . ....+..+...|...|++++|...+++.... +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45788889999999999999999987653 1 1235667777788888888888888777653 11
Q ss_pred CC-CHHHHHHHHHHhccccchHHHHHHHHHHHHh------CC-CchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhH
Q 048766 264 PM-DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ------GL-DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335 (525)
Q Consensus 264 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 335 (525)
.| ...++..+...+...|++++|...+..+.+. +. +.... .
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-------------------------------~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK-------------------------------Q 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH-------------------------------H
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH-------------------------------H
Confidence 11 2334444555555555555555555555432 11 11222 3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhC------CCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh------CC
Q 048766 336 WNAMITGYARNGDLTKVIELFEQLKTV------RDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDY------GI 402 (525)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~------~~ 402 (525)
+..+...+...|++++|++.++++.+. + ..|+ ..++..+...+...|+ +++|.++++++.+.. ..
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP-DDPNVAKTKNNLASCYLKQGK-FKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT-TCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCC
Confidence 444444555555555555555554442 1 1221 2344445555555555 555555555554310 00
Q ss_pred CCC-------hhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 403 KPT-------VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 403 ~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
.+. ...+..+...+...+.+.+|...++.. ...| ...++..++..|...|++++|.+.+++++++.|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 111 111222333344556666666667665 2233 3567888899999999999999999999998874
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=1.4e-11 Score=115.81 Aligned_cols=222 Identities=9% Similarity=0.005 Sum_probs=141.7
Q ss_pred hccccchHHHHHHHHHHHHhC--CC---chHHHHHHHHHHHHcCCCHHHHHHHHHhccC-----CC-----HhHHHHHHH
Q 048766 277 IAGLSALTWGMLIHSCVIKQG--LD---ASIVVASALLDMYSKCGQVEIADSMFRSLCR-----KN-----LVTWNAMIT 341 (525)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l~~ 341 (525)
+...|++++|...+..+.+.. .+ ....++..+..+|...|+++.|...+++... ++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 445556666666665554431 11 1234556666677777777777766666531 11 235667777
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCC----HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh---CCCCChhHHHHHHH
Q 048766 342 GYARNGDLTKVIELFEQLKTVRDLQPD----SVTFLNVLAACSHTDIPFDKVSEYFESMTKDY---GIKPTVEHCCSMIR 414 (525)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~ 414 (525)
.|...|++++|++.+++..+.....++ ..++..+...+...|+ +++|.+.+++..+.. +.+....++..++.
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD-DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 788888888888887776552100111 3456667777777887 888888888776511 11223566777888
Q ss_pred HHhccCChHHHHHHHHHh----CC--CCc-hhHHHHHHHHHhcCCC---hHHHHHHHHHHHhhcCCChhHHHHHHHHHhh
Q 048766 415 LMGQKGEVWRAQRMIREL----GF--GSY-GVVWRALLSASGACSD---LDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484 (525)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~----~~--~~~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 484 (525)
.|.+.|++++|...+++. .. .+. ...+..+...+...++ +.+|+..+++. ...|+....+..++..|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 888888888888888875 11 122 3344555566667777 77777777662 2224455667788999999
Q ss_pred ccChhHHHHHHHHHHH
Q 048766 485 HGNWDVASVMRNFMRE 500 (525)
Q Consensus 485 ~g~~~~A~~~~~~~~~ 500 (525)
.|++++|..++++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999888765
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=3e-11 Score=100.72 Aligned_cols=168 Identities=11% Similarity=-0.007 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhccC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHH
Q 048766 302 IVVASALLDMYSKCGQVEIADSMFRSLCR---KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378 (525)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 378 (525)
...+..+...+...|++++|...++.+.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 45566778888999999999999998873 466788889999999999999999999998842 3357778888888
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDV 456 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 456 (525)
+...|+ +++|.+.++++.+. .+.+...+..++..+...|++++|...++++ ..+.+...+..++..+...|++++
T Consensus 86 ~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQK-YDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcC-HHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 999999 99999999998864 2446788889999999999999999999987 223456788889999999999999
Q ss_pred HHHHHHHHHhhcCCChhH
Q 048766 457 ARISAAEVIKLEGDSDYV 474 (525)
Q Consensus 457 A~~~~~~~~~~~p~~~~~ 474 (525)
|...++++++..|+++..
T Consensus 163 A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 163 ALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHcCCCchhh
Confidence 999999999999876644
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.32 E-value=3.1e-11 Score=108.88 Aligned_cols=184 Identities=10% Similarity=0.032 Sum_probs=120.3
Q ss_pred HHHcCCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-------HhHHHH
Q 048766 311 MYSKCGQVEIADSMFRSLCR-----KN----LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-------SVTFLN 374 (525)
Q Consensus 311 ~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------~~~~~~ 374 (525)
.|...|++++|...|++... .+ ..+|+.+...|...|++++|+..+++..+ +.|+ ..++..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ---IFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HHHHcCCHHHHHHHHHH
Confidence 45556666666666655531 11 34667777777777788877777777665 2221 346677
Q ss_pred HHHHHcCC-CCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc---h-----hH
Q 048766 375 VLAACSHT-DIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY---G-----VV 440 (525)
Q Consensus 375 l~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~-----~~ 440 (525)
+...|... |+ +++|+..|++..+...-..+ ..++..++..|.+.|++++|+..+++. ...|+ . ..
T Consensus 123 lg~~~~~~lg~-~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 123 LGEILENDLHD-YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHHhhcC-HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 77778775 88 88888888887753211111 346778888899999999999999886 22222 1 14
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhH-----HHHHHHHHh--hccChhHHHHHHHHH
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYV-----YVMLCNLYT--SHGNWDVASVMRNFM 498 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~ 498 (525)
+..++..+...|++++|+..++++++++|+.... +..++.++. ..+++++|+..|+++
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 6677778888999999999999999988865543 344566664 456788888887654
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=1.3e-10 Score=108.99 Aligned_cols=232 Identities=11% Similarity=0.015 Sum_probs=150.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCH----HHHHHHHHHhccccchHHHHHHHHHHHHh----CCC--c-hH
Q 048766 235 WNSILTGYVNRNRVPEALHLFGEMQSKDV-PMDE----YTFSTMLSGIAGLSALTWGMLIHSCVIKQ----GLD--A-SI 302 (525)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 302 (525)
++.+...+...|++++|...+++...... .++. .++..+...+...|++++|...++...+. +.+ | ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 44455566666777777776666544210 1111 22445556666777777777777766543 221 2 34
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhccC--C------CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHH
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLCR--K------NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFL 373 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 373 (525)
..+..+...+...|++++|...+++... + ...++..+...+...|++++|...+++..... ..++ ...+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~-~~~~~~~~~~ 214 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL-GNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCCCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hccCcchhHH
Confidence 4566677788888888888888877641 1 12457777888889999999999998876532 1111 11111
Q ss_pred -----HHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-C--hhHHHHHHHHHhccCChHHHHHHHHHh-------CCCCch
Q 048766 374 -----NVLAACSHTDIPFDKVSEYFESMTKDYGIKP-T--VEHCCSMIRLMGQKGEVWRAQRMIREL-------GFGSYG 438 (525)
Q Consensus 374 -----~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~ 438 (525)
..+..+...|+ +++|...++..... ...+ . ...+..+...+...|++++|...+++. +..++.
T Consensus 215 ~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 292 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGD-KAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 292 (373)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhH
Confidence 22334667888 99999999888643 1111 1 224567788899999999999999876 111122
Q ss_pred -hHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 439 -VVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 439 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
..+..+..++...|++++|...++++++..+
T Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 293 NRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 2556677788899999999999999988764
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.32 E-value=2.6e-10 Score=107.08 Aligned_cols=231 Identities=10% Similarity=0.046 Sum_probs=172.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----HHHHHHHHHHhccccchHHHHHHHHHHHHhCC-----C-chHHH
Q 048766 236 NSILTGYVNRNRVPEALHLFGEMQSKDV-PMD----EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL-----D-ASIVV 304 (525)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~ 304 (525)
......+...|++++|+..|++...... .++ ..++..+..++...|+++.|...+....+... . ....+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445566788888888888888776411 122 34566777788888899988888888765311 1 12456
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCCCCHhH
Q 048766 305 ASALLDMYSKCGQVEIADSMFRSLCR-----KN----LVTWNAMITGYARNGDLTKVIELFEQLKTV----RDLQPDSVT 371 (525)
Q Consensus 305 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~p~~~~ 371 (525)
+..+..+|...|++++|.+.+++..+ ++ ..++..+...|...|++++|++.+++..+. + .+....+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV-PDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-GGGHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC-ChhHHHH
Confidence 77888899999999999998887752 22 246788889999999999999999988761 1 1223677
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC---ChhHHHHHHHHHhccCC---hHHHHHHHHHhCCCCc-hhHHHHH
Q 048766 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP---TVEHCCSMIRLMGQKGE---VWRAQRMIRELGFGSY-GVVWRAL 444 (525)
Q Consensus 372 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l 444 (525)
+..+...+...|+ +++|...+++..+...-.. ....+..+...|...|+ +.+|+..+++.+..|+ ...+..+
T Consensus 264 ~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQ-TQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 8888889999999 9999999999876422211 23456667777888888 8899999998754444 3456778
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhc
Q 048766 445 LSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
+..|...|++++|...++++++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999998764
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.30 E-value=3.9e-10 Score=99.44 Aligned_cols=244 Identities=9% Similarity=0.021 Sum_probs=130.7
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHH
Q 048766 209 NGIAQFGDIEDAIMILSSMPSPNSS-SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287 (525)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 287 (525)
.-..-.|.+..++.-...+...+.. .-.-+.++|+..|+++.. ..-.|....+..+..-+. .+ +.
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~-~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLD-TK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHT-TT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhc-cc----HH
Confidence 3344567777777755555432222 222334667777766531 112334334333333332 11 45
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCC-----CHhHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 048766 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK-----NLVTWNAMITGYARNGDLTKVIELFEQLKTV 362 (525)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 362 (525)
..++++.+.+ +++......+..++...|++++|.+++.+.... +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~- 164 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN- 164 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 5555555444 333444446666677777777777777766422 334555666667777777777777777766
Q ss_pred CCCCC-----CHhHHHHHHHHH--cC--CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-
Q 048766 363 RDLQP-----DSVTFLNVLAAC--SH--TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL- 432 (525)
Q Consensus 363 ~~~~p-----~~~~~~~l~~~~--~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 432 (525)
..| +..+...++.++ .. .++ +.+|..+|+++... .|+......+..++.+.|++++|.+.++.+
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~-~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKET-ATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCST-TTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556 244555555442 11 224 67777777776542 343222223333666677777777776654
Q ss_pred CC-----------CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 433 GF-----------GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 433 ~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
.. +.++.++..++......|+ +|.++++++.+..|++|.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 11 2234445444444444555 666777777777776665544
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=1.4e-10 Score=102.70 Aligned_cols=184 Identities=11% Similarity=0.024 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhccC--C-C---HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHH
Q 048766 301 SIVVASALLDMYSKCGQVEIADSMFRSLCR--K-N---LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFL 373 (525)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 373 (525)
+...+..+...+.+.|++++|...|+.+.. | + ...+..+..+|...|++++|+..|++..+...-.|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344444455555555666666666655541 1 2 334555555555566666666666655552100111 22333
Q ss_pred HHHHHHcC--------CCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHH
Q 048766 374 NVLAACSH--------TDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRAL 444 (525)
Q Consensus 374 ~l~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 444 (525)
.+..++.. .|+ +++|...|+++.+. .|+ ......+.......++ ....+..+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~---------------~~~~~~~l 154 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTD-TRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAK---------------LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHH-HHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchh-HHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 44444444 455 55555555555543 222 1111111000000000 01113566
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCC---hhHHHHHHHHHhhc----------cChhHHHHHHHHHHHcCC
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDS---DYVYVMLCNLYTSH----------GNWDVASVMRNFMRERGL 503 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 503 (525)
+..+...|++++|+..|+++++..|++ +.++..++.+|... |++++|...++++.+..+
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 778888999999999999999988874 45788888888866 888999999998887654
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=2.6e-11 Score=108.83 Aligned_cols=200 Identities=13% Similarity=0.161 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhccC-------C----CHhHHHHHHHHHHhcCChhHHHHHHHHHhhC-----CC
Q 048766 301 SIVVASALLDMYSKCGQVEIADSMFRSLCR-------K----NLVTWNAMITGYARNGDLTKVIELFEQLKTV-----RD 364 (525)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 364 (525)
...++..+...|...|++++|...++++.. + ...++..+...|...|++++|+..++++.+. +.
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 344555566666666666666666655531 1 1235666667777777777777777766552 00
Q ss_pred CCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh-----CCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-C---
Q 048766 365 LQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY-----GIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-G--- 433 (525)
Q Consensus 365 ~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~--- 433 (525)
..| ...++..+...+...|+ +++|.++++++.+.. +-.| ....+..++..|.+.|++++|...++++ .
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGK-AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 123 24566677777777777 888888777776431 0022 3456777788888888888888888765 1
Q ss_pred ------CCCc-hhHHHHHHHHHhcC------CChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 434 ------FGSY-GVVWRALLSASGAC------SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 434 ------~~~~-~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
..+. ...+..+....... ..+..+...++......|..+.++..++.+|...|++++|..++++..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 201 EKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222 22333333333222 2233344444433333455667788999999999999999999988765
Q ss_pred c
Q 048766 501 R 501 (525)
Q Consensus 501 ~ 501 (525)
.
T Consensus 281 ~ 281 (283)
T 3edt_B 281 N 281 (283)
T ss_dssp T
T ss_pred h
Confidence 3
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.28 E-value=1.8e-09 Score=95.22 Aligned_cols=241 Identities=10% Similarity=-0.040 Sum_probs=165.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCH
Q 048766 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318 (525)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (525)
++-..-.|++..++.-..++.. ........-+.+++...|++... ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 4455667888888874333221 22223334445677777766532 12234444444444433 322
Q ss_pred HHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHH
Q 048766 319 EIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFE 394 (525)
Q Consensus 319 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~ 394 (525)
|...|++.. .++..++..+..++...|++++|++++.+....+ ..+ +...+..++..+.+.|+ .+.|.+.++
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~-~~~~~lea~~l~vqi~L~~~r-~d~A~k~l~ 160 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDND-EAEGTTELLLLAIEVALLNNN-VSTASTIFD 160 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSS-CSTTHHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCcCcHHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence 677777665 3455666678888999999999999999987754 212 46777788889999999 999999999
Q ss_pred HhhhhhCCCC-----ChhHHHHHHHH--HhccC--ChHHHHHHHHHh-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHH
Q 048766 395 SMTKDYGIKP-----TVEHCCSMIRL--MGQKG--EVWRAQRMIREL-GFGSYGVVWRALLSASGACSDLDVARISAAEV 464 (525)
Q Consensus 395 ~~~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 464 (525)
+|.+. .| +..+...|+.+ ....| ++.+|..+|+++ ...|+......++.++.+.|++++|.+.++.+
T Consensus 161 ~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 161 NYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99743 66 34555566655 33334 899999999998 44454333333444788899999999999988
Q ss_pred Hhh----------cCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 465 IKL----------EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 465 ~~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.+. +|+++.++..++.+....|+ +|.++++++.+..+
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 776 58899999888888888887 88999999988764
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.28 E-value=2.6e-10 Score=98.44 Aligned_cols=181 Identities=10% Similarity=0.003 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhccC--CC----HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHh----HH
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLCR--KN----LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV----TF 372 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~ 372 (525)
..+..+...+.+.|++++|...|+.+.. |+ ...+..++.+|.+.|++++|+..|+++.+ ..|+.. .+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~---~~P~~~~~~~a~ 81 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR---LNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---HCcCCCcHHHHH
Confidence 3444556667778888888888887752 32 23566677788888888888888888777 345422 33
Q ss_pred HHHHHHHcC------------------CCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHhC
Q 048766 373 LNVLAACSH------------------TDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIRELG 433 (525)
Q Consensus 373 ~~l~~~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (525)
..+..++.. .|+ +++|...|+++.+. .|+ ...+....... .+...
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----------~~~~~-- 145 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQ-ARAAFSDFSKLVRG---YPNSQYTTDATKRLV----------FLKDR-- 145 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHH-HHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----------HHHHH--
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHH-HHHHHHHHHHHHHH---CcCChhHHHHHHHHH----------HHHHH--
Confidence 333333332 233 44555555544432 222 11111100000 00000
Q ss_pred CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh---hHHHHHHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD---YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 434 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
.......++..+.+.|++++|+..|+++++..|+++ .++..++.++.+.|++++|...++++...++..
T Consensus 146 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 146 ---LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ---HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 001113456778899999999999999999999876 569999999999999999999999998876654
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.26 E-value=1.9e-10 Score=101.85 Aligned_cols=206 Identities=11% Similarity=0.016 Sum_probs=152.6
Q ss_pred CCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHcCCCHHHHHHHHHhccC--C-C---Hh
Q 048766 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS---IVVASALLDMYSKCGQVEIADSMFRSLCR--K-N---LV 334 (525)
Q Consensus 264 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~ 334 (525)
+.+...+..+...+...|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|+.+.. | + ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456777788888999999999999999998875 333 67888899999999999999999999862 3 2 34
Q ss_pred HHHHHHHHHHh--------cCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCCh
Q 048766 335 TWNAMITGYAR--------NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406 (525)
Q Consensus 335 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 406 (525)
.+..+..++.. .|++++|+..|+++.+ ..|+.... ..+...+..+... -.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~--------------~~a~~~~~~~~~~-----~~ 148 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID---RYPNHELV--------------DDATQKIRELRAK-----LA 148 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH---HCTTCTTH--------------HHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH---HCcCchhH--------------HHHHHHHHHHHHH-----HH
Confidence 67778888888 9999999999999998 55653211 1222222222111 11
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh-CCCC----chhHHHHHHHHHhcC----------CChHHHHHHHHHHHhhcCCC
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL-GFGS----YGVVWRALLSASGAC----------SDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~ 471 (525)
..+..++..|.+.|++++|+..|+++ ...| ....+..++.++... |++++|+..++++++..|++
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 23567788899999999999999986 2223 245677777777755 89999999999999999988
Q ss_pred hh---HHHHHHHHHhhccChhHHH
Q 048766 472 DY---VYVMLCNLYTSHGNWDVAS 492 (525)
Q Consensus 472 ~~---~~~~l~~~~~~~g~~~~A~ 492 (525)
+. +...+..++...|+++++.
T Consensus 229 ~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 64 4556666666666665543
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.26 E-value=1.7e-10 Score=103.94 Aligned_cols=200 Identities=9% Similarity=-0.033 Sum_probs=126.1
Q ss_pred hccccchHHHHHHHHHHHHh----CCCch-HHHHHHHHHHHHcCCCHHHHHHHHHhccC-----CC----HhHHHHHHHH
Q 048766 277 IAGLSALTWGMLIHSCVIKQ----GLDAS-IVVASALLDMYSKCGQVEIADSMFRSLCR-----KN----LVTWNAMITG 342 (525)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~ 342 (525)
+...|++++|...+.+..+. +.++. ..++..+..+|.+.|++++|...+++... .+ ..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444555555444444332 21111 34566666667777777777666666541 11 2367777888
Q ss_pred HHhc-CChhHHHHHHHHHhhCCCCCCC-------HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCCh-----hHH
Q 048766 343 YARN-GDLTKVIELFEQLKTVRDLQPD-------SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV-----EHC 409 (525)
Q Consensus 343 ~~~~-~~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~ 409 (525)
|... |++++|+..|++..+ +.|+ ..++..+...+...|+ +++|+..|+++.+...-.+.. ..+
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~---~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGE---WYAQDQSVALSNKCFIKCADLKALDGQ-YIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHH---HHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHH---HHHhCCChHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 8885 888888888888776 3331 3457777888888888 999999998887541111111 146
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-CCCCchh------HHHHHHHHHh--cCCChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-GFGSYGV------VWRALLSASG--ACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~------~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
..++.++...|++++|+..+++. ...|+.. .+..++.++. ..+++++|+..|+++..++|.+...+..+-.
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 67788888899999999999886 4444421 2344555554 4577999999999888888855444444433
No 92
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=9.1e-11 Score=118.02 Aligned_cols=164 Identities=9% Similarity=0.119 Sum_probs=140.2
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHH
Q 048766 299 DASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLN 374 (525)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 374 (525)
|.+..+++.+..+|.+.|++++|++.|++.. +.+..+|..+..+|.+.|++++|++.|++..+ +.|+ ...+..
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 4456788888999999999999999998876 34577899999999999999999999999998 6675 678888
Q ss_pred HHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcC
Q 048766 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGAC 451 (525)
Q Consensus 375 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~ 451 (525)
+..++...|+ +++|++.|++..+. .| +...|..++.+|.+.|++++|++.|++. ...|+ ...+..++..+...
T Consensus 83 Lg~~l~~~g~-~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 83 MGNTLKEMQD-VQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence 9999999999 99999999998854 55 4778999999999999999999999986 44454 67888899999999
Q ss_pred CChHHHHHHHHHHHhhcC
Q 048766 452 SDLDVARISAAEVIKLEG 469 (525)
Q Consensus 452 ~~~~~A~~~~~~~~~~~p 469 (525)
|++++|.+.+++++++.|
T Consensus 159 g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 159 CDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp TCCTTHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCh
Confidence 999999999999998765
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.25 E-value=2.4e-10 Score=102.56 Aligned_cols=174 Identities=5% Similarity=-0.072 Sum_probs=134.2
Q ss_pred HHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhh
Q 048766 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398 (525)
Q Consensus 320 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 398 (525)
.....+....+.+...+..+...+...|++++|+..|+++.+ ..| +...+..+...+...|+ +++|.+.++++..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~-~~~A~~~l~~~~~ 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNR-SEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTC-HHHHHHHHTTSCG
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCC-HHHHHHHHHhCch
Confidence 334444444445555666777788888888888888888888 556 45677778888888888 8999998888874
Q ss_pred hhCCCCChhHHHH-HHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC--hh
Q 048766 399 DYGIKPTVEHCCS-MIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS--DY 473 (525)
Q Consensus 399 ~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~ 473 (525)
. .|+...... ....+.+.++.++|+..+++. . .+.+...+..+...+...|++++|+..++++++.+|++ ..
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3 455433322 233356777788888888876 2 23457788899999999999999999999999999988 88
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 474 VYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
++..++.++...|+.++|...+++...
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999999987654
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.22 E-value=1.6e-11 Score=98.40 Aligned_cols=140 Identities=11% Similarity=0.012 Sum_probs=90.9
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhc
Q 048766 341 TGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQ 418 (525)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 418 (525)
..+...|++++|+..+++... ..|+ ...+..+...|...|+ +++|++.|++..+. .| ++..|..++.+|.+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~-~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKE-YDLAKKYICTYINV---QERDPKAHRFLGLLYEL 77 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTC-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 344455666777777766655 3443 3444556666667776 77777777776643 34 46667777777777
Q ss_pred cCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHH-HHHHHhhcCCChhHHHHHHHHHhhccC
Q 048766 419 KGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARIS-AAEVIKLEGDSDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 419 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 487 (525)
.|++++|+..|++. ...| ++..+..++..+.+.|++++|.+. ++++++++|+++.+|.....++...|+
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777777777765 3333 355677777777777777665544 577888888888777777777777664
No 95
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.19 E-value=1.2e-10 Score=92.56 Aligned_cols=103 Identities=12% Similarity=-0.089 Sum_probs=91.2
Q ss_pred CCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHH
Q 048766 401 GIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477 (525)
Q Consensus 401 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 477 (525)
.+.| +...+..++..+.+.|++++|+..|+++ ...| ++..|..++.++...|++++|+..|+++++++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3445 3567888899999999999999999987 3334 57788999999999999999999999999999999999999
Q ss_pred HHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 478 LCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
++.+|...|++++|+..|++..+...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999988764
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.19 E-value=4.6e-10 Score=87.86 Aligned_cols=129 Identities=18% Similarity=0.119 Sum_probs=88.4
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHh
Q 048766 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASG 449 (525)
Q Consensus 372 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~ 449 (525)
+..+...+...|+ +++|..+++.+.+. .+.+...+..++..+...|++++|...++++ ..+.+...+..++..+.
T Consensus 4 ~~~l~~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGD-YDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCc-HHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3344445555555 66666666655542 1223455556666666666666666666665 11234556667777888
Q ss_pred cCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 450 ACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 450 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
..|++++|+..++++++..|.++.++..++.++...|++++|...++++.+..+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 888888888888888888888888888888888888888888888888876543
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.19 E-value=2.8e-09 Score=90.83 Aligned_cols=173 Identities=10% Similarity=-0.005 Sum_probs=134.5
Q ss_pred HHHHHHhcc-CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCC----CCcchHHHHHHH
Q 048766 321 ADSMFRSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD----IPFDKVSEYFES 395 (525)
Q Consensus 321 A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~~a~~~~~~ 395 (525)
|.+.|++.. ..++..+..+...|...+++++|+++|++..+.| +...+..+...|.. + + +++|.++|++
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~-~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQAD-YPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCC-HHHHHHHHHH
Confidence 344444443 4566777778888888889999999999888754 45566666666766 5 5 8899999988
Q ss_pred hhhhhCCCCChhHHHHHHHHHhc----cCChHHHHHHHHHh-CCCCc---hhHHHHHHHHHhc----CCChHHHHHHHHH
Q 048766 396 MTKDYGIKPTVEHCCSMIRLMGQ----KGEVWRAQRMIREL-GFGSY---GVVWRALLSASGA----CSDLDVARISAAE 463 (525)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~----~~~~~~A~~~~~~ 463 (525)
..+. -++..+..|...|.. .+++++|++.|++. ...+. +..+..|...|.. .+++++|+..|++
T Consensus 79 A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 79 AVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 8653 366777888888877 88999999999987 43342 6778888888877 7899999999999
Q ss_pred HHhhcCCChhHHHHHHHHHhhc-c-----ChhHHHHHHHHHHHcCCc
Q 048766 464 VIKLEGDSDYVYVMLCNLYTSH-G-----NWDVASVMRNFMRERGLR 504 (525)
Q Consensus 464 ~~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~ 504 (525)
+.+. |.++.++..|+.+|... | ++++|..++++..+.|..
T Consensus 155 A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 9988 55788999999998764 3 899999999999888753
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.17 E-value=2.8e-10 Score=93.95 Aligned_cols=155 Identities=8% Similarity=0.024 Sum_probs=96.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHH-H
Q 048766 339 MITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL-M 416 (525)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 416 (525)
+...+...|++++|+..|++..+ ..| +...+..+...+...|+ +++|...++.+.+. .|++..+..+... +
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~-~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSD---ELQSRGDVKLAKADCLLETKQ-FELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCH---HHHTSHHHHHHHHHHHHHTTC-HHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 34445555555555555555554 333 24445555555555555 55666555555432 2222222211111 1
Q ss_pred hccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC--hhHHHHHHHHHhhccChhHHH
Q 048766 417 GQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDS--DYVYVMLCNLYTSHGNWDVAS 492 (525)
Q Consensus 417 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 492 (525)
...++..+|+..+++. ...| +...+..++..+...|++++|+..++++++.+|+. +.++..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1112223455566654 2234 46778888888999999999999999999999864 568999999999999999999
Q ss_pred HHHHHHHH
Q 048766 493 VMRNFMRE 500 (525)
Q Consensus 493 ~~~~~~~~ 500 (525)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987754
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=1.3e-10 Score=117.48 Aligned_cols=166 Identities=12% Similarity=-0.020 Sum_probs=89.0
Q ss_pred HcCCCHHHHHHHHHhcc-----------CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHc
Q 048766 313 SKCGQVEIADSMFRSLC-----------RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACS 380 (525)
Q Consensus 313 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 380 (525)
...|++++|.+.+++.. +.+...+..+...+...|++++|++.|+++.+ ..| +...+..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE---RVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc---cCcchHHHHHHHHHHHH
Confidence 44555555555555544 22334555555555556666666666665555 333 3445555555555
Q ss_pred CCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHH
Q 048766 381 HTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVA 457 (525)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A 457 (525)
..|+ +++|.+.|+++.+. .| +...+..++.+|.+.|++++ ++.|+++ ...| +...|..++.++...|++++|
T Consensus 479 ~~g~-~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 479 LTGD-YDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHTC-HHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCC-HHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 5555 66666666555532 33 34455555555666666655 5555554 2222 244555555566666666666
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 458 RISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 458 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
++.|+++++++|++..++..++.++...|
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 66666666666655566666666654433
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.14 E-value=5.2e-10 Score=95.13 Aligned_cols=135 Identities=10% Similarity=-0.010 Sum_probs=101.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHH
Q 048766 338 AMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRL 415 (525)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 415 (525)
.+...|...|++++|+..|++..+ ..| +...+..+...+...|+ +++|.+.|+++.+. .| ++..+..++..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~---~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQ---KAPNNVDCLEACAEMQVCRGQ-EKDALRMYEKILQL---EADNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc---CCCCHHHHHHHHHH
Confidence 378889999999999999999998 566 56788888888999999 99999999999854 55 57788888888
Q ss_pred HhccCC--hHHHHHHHHHh-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 416 MGQKGE--VWRAQRMIREL-GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 416 ~~~~g~--~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
|...|+ .+.+...++.. ...|....+.....++...|++++|+..|++++++.|+ ......+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~~ 198 (208)
T 3urz_A 132 YYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 876654 34556666655 32333345556677777889999999999999999994 444444443
No 101
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=7.6e-10 Score=99.11 Aligned_cols=200 Identities=9% Similarity=0.017 Sum_probs=117.6
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHh------CC-CchHHHHHHHHHHHHcCCCHHHHHHHHHhccC-------C-
Q 048766 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQ------GL-DASIVVASALLDMYSKCGQVEIADSMFRSLCR-------K- 331 (525)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~- 331 (525)
..++..+...+...|++++|...+..+.+. +. +....++..+..+|...|++++|.+.+++... +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345555666666666666666666666543 21 22345666677777777777777777766541 1
Q ss_pred ---CHhHHHHHHHHHHhcCChhHHHHHHHHHhhC-----CCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh--
Q 048766 332 ---NLVTWNAMITGYARNGDLTKVIELFEQLKTV-----RDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDY-- 400 (525)
Q Consensus 332 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~-- 400 (525)
...++..+...|...|++++|+..++++.+. +...|+ ..++..+...+...|+ +++|.++++++.+..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK-YQDAETLYKEILTRAHE 201 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 1345666777777778888888777777663 101332 4566677777777777 888888877776431
Q ss_pred ----CCCC-ChhHHHHHHHHHhcc------CChHHHHHHHHHhC-CCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 048766 401 ----GIKP-TVEHCCSMIRLMGQK------GEVWRAQRMIRELG-FGSY-GVVWRALLSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 401 ----~~~~-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
...+ ....+..+...+... ..+.++...++... ..|+ ...+..++..+...|++++|...++++++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122 222333333333332 23444444444442 2233 456778889999999999999999998875
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.13 E-value=1.1e-10 Score=93.33 Aligned_cols=123 Identities=10% Similarity=-0.073 Sum_probs=102.9
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCC
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSD 453 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 453 (525)
..+...|+ +++|++.++.... ..| ++..+..++..|.+.|++++|++.|++. ...| +..+|..++..+...|+
T Consensus 5 ~~~~~~~~-~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKAD-VERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHH-HHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCh-HHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 34555666 8999999988763 344 3556778999999999999999999987 3344 57789999999999999
Q ss_pred hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHH-HHHHHHcCC
Q 048766 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM-RNFMRERGL 503 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~ 503 (525)
+++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999887765 588877654
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.11 E-value=8.2e-10 Score=109.80 Aligned_cols=159 Identities=10% Similarity=0.024 Sum_probs=122.0
Q ss_pred CCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHH
Q 048766 315 CGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVS 390 (525)
Q Consensus 315 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~ 390 (525)
.|++++|.+.+++.. +.+...|..+...+...|++++|++.+++..+ ..| +...+..+...+...|+ +++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~-~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQR-HAEAA 77 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTC-HHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCC-HHHHH
Confidence 478899999999886 34567889999999999999999999999998 556 46788888889999999 99999
Q ss_pred HHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcC---CChHHHHHHHHHHH
Q 048766 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGAC---SDLDVARISAAEVI 465 (525)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~ 465 (525)
+.+++..+. .+.+...+..++..|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.+++++
T Consensus 78 ~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999999864 1335778899999999999999999999987 3333 467788888889888 99999999999999
Q ss_pred hhcCCChhHHHHHH
Q 048766 466 KLEGDSDYVYVMLC 479 (525)
Q Consensus 466 ~~~p~~~~~~~~l~ 479 (525)
+.+|++...+..++
T Consensus 156 ~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 156 AQGVGAVEPFAFLS 169 (568)
T ss_dssp HHTCCCSCHHHHTT
T ss_pred hcCCcccChHHHhC
Confidence 99998888887776
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.11 E-value=8.2e-10 Score=85.16 Aligned_cols=97 Identities=11% Similarity=0.015 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 484 (525)
..+...+..|.+.|++++|++.|++. ... .+...|..++.++.+.|++++|+..++++++++|+++.+|..++.++..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44556666677777777777777665 222 3355666666777777777777777777777777777777777777777
Q ss_pred ccChhHHHHHHHHHHHcCC
Q 048766 485 HGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~ 503 (525)
.|++++|++.|++..+..+
T Consensus 94 ~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHHCc
Confidence 7777777777777666543
No 105
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=2.5e-09 Score=83.56 Aligned_cols=131 Identities=16% Similarity=0.200 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 414 (525)
.|..++..+...|++++|+.+++++.+.. +.+...+..+...+...|+ +++|..+++++.+. .+.+...+..++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGD-YDEAIEYYQKALEL--DPRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcC-HHHHHHHHHHHHHH--CCCchHHHHHHHH
Confidence 45667777888888888888888887743 2356667777777778887 88888888888754 2335667778888
Q ss_pred HHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 415 LMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
.+...|++++|.+.++++ . .+.+...+..++..+...|++++|...++++++.+|+
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888889999998888876 2 2334667788888899999999999999999998885
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.09 E-value=2.6e-09 Score=96.94 Aligned_cols=219 Identities=9% Similarity=-0.026 Sum_probs=150.7
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcc-ccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHH
Q 048766 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG-LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323 (525)
Q Consensus 245 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 323 (525)
.|++++|.+++++..+.. +.. +.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 466777777777665431 110 112 46666666666543 446777888888888
Q ss_pred HHHhccC-----CC----HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCCC--HhHHHHHHHHHcCCCCCcchHH
Q 048766 324 MFRSLCR-----KN----LVTWNAMITGYARNGDLTKVIELFEQLKTVRD--LQPD--SVTFLNVLAACSHTDIPFDKVS 390 (525)
Q Consensus 324 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~~a~ 390 (525)
.|.+... .+ ..+|+.+...|...|++++|+..|++..+... -.|. ..++..+...|.. |+ +++|+
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~-~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD-LSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC-HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC-HHHHH
Confidence 8777641 12 34778888999999999999999998765210 0222 3567778888888 88 99999
Q ss_pred HHHHHhhhhhCCCC----ChhHHHHHHHHHhccCChHHHHHHHHHh-C---CCCc----hhHHHHHHHHHhcCCChHHHH
Q 048766 391 EYFESMTKDYGIKP----TVEHCCSMIRLMGQKGEVWRAQRMIREL-G---FGSY----GVVWRALLSASGACSDLDVAR 458 (525)
Q Consensus 391 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~~----~~~~~~l~~~~~~~~~~~~A~ 458 (525)
+.|++..+...-.. ...++..++..|.+.|++++|+..+++. . ..++ ...+..++..+...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998875421111 1467888999999999999999999986 1 1111 235566677778889999999
Q ss_pred HHHHHHHhhcCCChhH-----HHHHHHHHhhccChhHHHH
Q 048766 459 ISAAEVIKLEGDSDYV-----YVMLCNLYTSHGNWDVASV 493 (525)
Q Consensus 459 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 493 (525)
..+++++ ..|..... ...++.++ ..|+.+.+..
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999 88865432 34455555 5677666655
No 107
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.09 E-value=3.1e-08 Score=89.20 Aligned_cols=162 Identities=6% Similarity=-0.068 Sum_probs=123.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHh----HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHH
Q 048766 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSV----TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHC 409 (525)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 409 (525)
..+..+...|++++|..++++..+.....|+.. .+..+...+...++ +++|+..++++.+...-.++ ...+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD-YEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccC-HHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 346678889999999999999887432233321 23345566677777 99999999998863111222 2368
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-----C--CC-Cc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC------hhH
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-----G--FG-SY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDS------DYV 474 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-----~--~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~ 474 (525)
+.++..|...|++++|+..++++ . .. +. ..++..++..|.+.|++++|+..+++++++.+.. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 89999999999999999999886 1 11 11 3467889999999999999999999999876432 678
Q ss_pred HHHHHHHHhhccC-hhHHHHHHHHHHH
Q 048766 475 YVMLCNLYTSHGN-WDVASVMRNFMRE 500 (525)
Q Consensus 475 ~~~l~~~~~~~g~-~~~A~~~~~~~~~ 500 (525)
+..++.+|.+.|+ +++|...+++..+
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999995 6999999998865
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.07 E-value=1.9e-09 Score=97.80 Aligned_cols=198 Identities=9% Similarity=-0.031 Sum_probs=150.3
Q ss_pred cccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHH
Q 048766 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358 (525)
Q Consensus 279 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 358 (525)
..|++++|..++++..+.... . .+...++++.|...|... +..|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 467888999999888765321 1 011157888888877654 5678889999999999998
Q ss_pred HhhCCC-C-CC--CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCC--C--ChhHHHHHHHHHhccCChHHHHHHHH
Q 048766 359 LKTVRD-L-QP--DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK--P--TVEHCCSMIRLMGQKGEVWRAQRMIR 430 (525)
Q Consensus 359 ~~~~~~-~-~p--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (525)
..+... . .+ -..+|..+...|...|+ +++|+..+++..+.+.-. + ...++..+...|.. |++++|+..++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQR-MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 766210 0 11 13577888888999999 999999999876542111 1 14577888999988 99999999999
Q ss_pred Hh----C-C-CCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh------hHHHHHHHHHhhccChhHHHHHHH
Q 048766 431 EL----G-F-GSY--GVVWRALLSASGACSDLDVARISAAEVIKLEGDSD------YVYVMLCNLYTSHGNWDVASVMRN 496 (525)
Q Consensus 431 ~~----~-~-~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 496 (525)
+. + . .+. ..++..++..+...|++++|+..+++++++.|++. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 86 1 1 111 45678889999999999999999999999876442 367788889999999999999999
Q ss_pred HHH
Q 048766 497 FMR 499 (525)
Q Consensus 497 ~~~ 499 (525)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 987
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.05 E-value=8.4e-10 Score=87.89 Aligned_cols=102 Identities=16% Similarity=0.004 Sum_probs=80.7
Q ss_pred CCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHH
Q 048766 402 IKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 402 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 478 (525)
+.| +...+..++..+.+.|++++|+..|+++ .. +.+...|..++.++...|++++|+..|+++++++|+++.++..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 344 4556677788888888888888888876 22 33567777888888888888888888888888888888888888
Q ss_pred HHHHhhccChhHHHHHHHHHHHcCC
Q 048766 479 CNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+.+|...|++++|+..|++..+..+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 8888888888888888888877654
No 110
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.05 E-value=6.7e-09 Score=105.05 Aligned_cols=167 Identities=11% Similarity=0.039 Sum_probs=120.2
Q ss_pred ccccchHHHHHHHHHHH--------HhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhc
Q 048766 278 AGLSALTWGMLIHSCVI--------KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARN 346 (525)
Q Consensus 278 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 346 (525)
...|++++|...++... +.. +.+...+..+..++...|++++|.+.|+++. +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56777777777777776 322 4456677777778888888888888888776 34666778888888888
Q ss_pred CChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHH
Q 048766 347 GDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWR 424 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 424 (525)
|++++|++.|++..+ ..| +...+..+..++...|+ +++ ++.|+++.+. .| +...|..++.+|.+.|++++
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~-~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGN-TDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTC-CCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCC-hHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHH
Confidence 888888888888887 556 35667777777888887 888 8888887753 44 46677888888888888888
Q ss_pred HHHHHHHh-CCCCc-hhHHHHHHHHHhcCCC
Q 048766 425 AQRMIREL-GFGSY-GVVWRALLSASGACSD 453 (525)
Q Consensus 425 A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~ 453 (525)
|++.|+++ ...|+ ...+..+..++...++
T Consensus 553 A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 553 AVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888886 45555 4566667777666554
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.04 E-value=7.4e-08 Score=85.90 Aligned_cols=209 Identities=11% Similarity=0.128 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC--CHHHHHHHHHhcc---CCCHhHHHHHHHHH----Hhc---CChhHH
Q 048766 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCG--QVEIADSMFRSLC---RKNLVTWNAMITGY----ARN---GDLTKV 352 (525)
Q Consensus 285 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~----~~~---~~~~~a 352 (525)
+|+.....++..+ +.+..+++.-..++...| +++++.+.++.+. +.+..+|+.-...+ ... ++++++
T Consensus 51 ~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 51 RALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 3444444444433 333334444444444555 5666666666554 23344454443333 333 566777
Q ss_pred HHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcc--hHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCC------hH
Q 048766 353 IELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFD--KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGE------VW 423 (525)
Q Consensus 353 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 423 (525)
+++++++.+ ..| +...+..-...+...+. ++ +++++++++.+. -.-+...|+.-..++.+.|+ ++
T Consensus 130 L~~~~~~l~---~~pkny~aW~~R~~vl~~l~~-~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 130 FDILEAMLS---SDPKNHHVWSYRKWLVDTFDL-HNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 777777776 344 45556555555555555 66 777777777653 12244555555555555555 66
Q ss_pred HHHHHHHHh--CCCCchhHHHHHHHHHhcCCC-hHHHHHHHHHHHhhc---CCChhHHHHHHHHHhhccChhHHHHHHHH
Q 048766 424 RAQRMIREL--GFGSYGVVWRALLSASGACSD-LDVARISAAEVIKLE---GDSDYVYVMLCNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 424 ~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (525)
++++.++++ ..+.+...|..+...+.+.|+ .+.+..+..++++++ |.++.++..++.+|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 777777665 223345666666666666665 344555666666655 66777777777777777777778877777
Q ss_pred HHH
Q 048766 498 MRE 500 (525)
Q Consensus 498 ~~~ 500 (525)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 112
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.03 E-value=1.6e-08 Score=91.16 Aligned_cols=165 Identities=6% Similarity=-0.055 Sum_probs=121.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH----hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhC--CCCC--h
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS----VTFLNVLAACSHTDIPFDKVSEYFESMTKDYG--IKPT--V 406 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~ 406 (525)
.+...+..+...|++++|++.+++..+.....++. ..+..+...+...|+ +++|...+++..+... ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD-YEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSC-HHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcCCchHHHH
Confidence 44456677888899999999998887743111111 223344555677778 9999999988764311 1111 4
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh-------CCCCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC------C
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL-------GFGSY--GVVWRALLSASGACSDLDVARISAAEVIKLEGD------S 471 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~ 471 (525)
..++.++..|...|++++|+..++++ +..+. ..++..++..|...|++++|+..++++++..++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888999999999999999999875 21221 257888999999999999999999999987632 1
Q ss_pred hhHHHHHHHHHhhccChhHH-HHHHHHHHH
Q 048766 472 DYVYVMLCNLYTSHGNWDVA-SVMRNFMRE 500 (525)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 500 (525)
..++..++.+|...|++++| ..++++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67789999999999999999 777887654
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.02 E-value=2.6e-09 Score=82.34 Aligned_cols=115 Identities=8% Similarity=-0.019 Sum_probs=92.7
Q ss_pred CCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCC-CchhHH
Q 048766 365 LQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFG-SYGVVW 441 (525)
Q Consensus 365 ~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~ 441 (525)
+.|+ ...+......+.+.|+ +++|++.|++..+. -+.++..|..++.+|.+.|++++|+..+++. ... .+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGD-YPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 5564 3556677777888888 88888888888753 1335777888888888889999998888876 333 346788
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
..++.++...|++++|++.|+++++++|+++.++..|+.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 89999999999999999999999999999999998887764
No 114
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.02 E-value=2e-09 Score=91.45 Aligned_cols=158 Identities=11% Similarity=0.042 Sum_probs=116.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHH----------------HHHHHcCCCCCcchHHHHHHHhhhhhC
Q 048766 339 MITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLN----------------VLAACSHTDIPFDKVSEYFESMTKDYG 401 (525)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~----------------l~~~~~~~~~~~~~a~~~~~~~~~~~~ 401 (525)
....+...|++++|+..|++..+ ..|+ ...+.. +...+...|+ +++|+..|++..+.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA---LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN-YDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH--
Confidence 34455666777777777777766 4554 334444 7888889999 99999999999864
Q ss_pred CCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCC--ChHHHHHHHHHHHhhcCCChhHHH
Q 048766 402 IKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACS--DLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 402 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
.| ++..+..++.+|...|++++|+..|+++ ...| +...+..++..+...| +...+...++++....| ....+.
T Consensus 84 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~ 161 (208)
T 3urz_A 84 -APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARY 161 (208)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHH
Confidence 45 5788999999999999999999999987 3344 4677888888776554 45566777777654333 234566
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 477 MLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
.++.++...|++++|+..|++..+..+.
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 7888899999999999999999877654
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.02 E-value=5.1e-09 Score=104.03 Aligned_cols=150 Identities=14% Similarity=0.045 Sum_probs=75.5
Q ss_pred CChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHH
Q 048766 347 GDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWR 424 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 424 (525)
|++++|++.+++..+ ..| +...+..+...+...|+ +++|.+.+++..+ ..| +...+..++..|...|++++
T Consensus 3 g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 3 ADGPRELLQLRAAVR---HRPQDFVAWLMLADAELGMGD-TTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHH
Confidence 455566666666555 334 24555555555555565 6666666666553 233 34555556666666666666
Q ss_pred HHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc---cChhHHHHHHHHHH
Q 048766 425 AQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH---GNWDVASVMRNFMR 499 (525)
Q Consensus 425 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 499 (525)
|.+.+++. ...| +...+..++..+...|++++|++.++++++.+|+++.++..++.++... |++++|.+.+++..
T Consensus 76 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 76 AAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 66666654 2122 3445555566666666666666666666666666666666666666666 66666666666555
Q ss_pred HcCC
Q 048766 500 ERGL 503 (525)
Q Consensus 500 ~~~~ 503 (525)
+.+.
T Consensus 156 ~~~p 159 (568)
T 2vsy_A 156 AQGV 159 (568)
T ss_dssp HHTC
T ss_pred hcCC
Confidence 5443
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.00 E-value=1.1e-08 Score=91.76 Aligned_cols=162 Identities=6% Similarity=-0.109 Sum_probs=119.3
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHH
Q 048766 299 DASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375 (525)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 375 (525)
+.+...+..+...+.+.|++++|...|+++. +.+...+..+...+...|++++|+..++++.. ..|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHHHH
Confidence 5556666677777888888888888888775 34566788888888888888888888888877 45654433322
Q ss_pred HH-HHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC---chhHHHHHHHHHhc
Q 048766 376 LA-ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS---YGVVWRALLSASGA 450 (525)
Q Consensus 376 ~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~ 450 (525)
.. .+...+. .+.|.+.+++.... -+.+...+..++..|...|++++|+..++++ ...| +...+..++..+..
T Consensus 191 ~~~~l~~~~~-~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAA-DTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHT-SCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcc-cCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 22 3455566 77788888887753 2335777888888888899999998888886 2223 35678888888888
Q ss_pred CCChHHHHHHHHHHHh
Q 048766 451 CSDLDVARISAAEVIK 466 (525)
Q Consensus 451 ~~~~~~A~~~~~~~~~ 466 (525)
.|+.++|...+++.+.
T Consensus 268 ~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 268 LGTGDALASXYRRQLY 283 (287)
T ss_dssp HCTTCHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHH
Confidence 8988889888888765
No 117
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.00 E-value=4.9e-09 Score=86.40 Aligned_cols=155 Identities=11% Similarity=0.025 Sum_probs=120.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHH-Hc
Q 048766 305 ASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA-CS 380 (525)
Q Consensus 305 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 380 (525)
.......+.+.|++++|...|+... +.+...+..+...+...|++++|+..++++.+ ..|+.......... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHHH
Confidence 3456677888999999999999987 44677889999999999999999999999887 44544333222211 12
Q ss_pred CCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc---hhHHHHHHHHHhcCCChH
Q 048766 381 HTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY---GVVWRALLSASGACSDLD 455 (525)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~ 455 (525)
..+. ...|.+.+++..+. .| ++..+..++..+...|++++|+..++++ ...|+ ...+..++..+...|+.+
T Consensus 86 ~~~~-~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 86 QQAA-ESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHT-SCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred hhcc-cchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 2233 45678888888753 55 5788899999999999999999999987 55554 457888999999999999
Q ss_pred HHHHHHHHHHh
Q 048766 456 VARISAAEVIK 466 (525)
Q Consensus 456 ~A~~~~~~~~~ 466 (525)
+|...|++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999998875
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.99 E-value=7.9e-09 Score=88.18 Aligned_cols=127 Identities=12% Similarity=-0.043 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 414 (525)
.+..+...+...|++++|+..|++. +.|+...+..+...+...|+ +++|.+.+++..+. .+.+...+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~--~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKN-MTEAEKAFTRSINR--DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 3445556666677777777777654 35566666666666777776 77777777766643 1234556666666
Q ss_pred HHhccCChHHHHHHHHHh-CCCC-----------------chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 415 LMGQKGEVWRAQRMIREL-GFGS-----------------YGVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~-~~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
+|...|++++|++.+++. ...| ....+..++..+...|++++|.+.++++++..|
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 777777777777776665 1111 124556666666667777777777777776666
No 119
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.99 E-value=2.6e-07 Score=89.14 Aligned_cols=371 Identities=8% Similarity=0.001 Sum_probs=195.7
Q ss_pred chhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCC-hHHHHHHHHH
Q 048766 18 WDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ--PSVVSWNSLISGYVQSGK-YRKALNLFVE 94 (525)
Q Consensus 18 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~-~~~A~~~~~~ 94 (525)
++..|..+|+..+.. -|. |+++.+..+|++... |++..|...+....+.++ .+....+|+.
T Consensus 10 ~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 10 ELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp --CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred chHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 366677777766544 222 788889999988766 888888888877766653 3556677777
Q ss_pred HHhc-CCC-CCHhhHHHHHHHHc----ccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHh---cCCHHHHHHHHhhc
Q 048766 95 LERS-EIY-ADAYSFTSALAACG----QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGK---CGSVEDAIGVFGEM 165 (525)
Q Consensus 95 m~~~-~~~-p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~ 165 (525)
.... |.. ++...|...+..+. ..++.+.+..+|+.++.. ++.. +..+-..|.. ......+.+++.+.
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~--~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGS--LSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTT--HHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhh--HHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 6653 322 35566766666544 245677788888888763 2211 1222222211 11122222222211
Q ss_pred cCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 048766 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245 (525)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 245 (525)
. +.+..|...++.+ ...+.. .+...|...+..-...
T Consensus 150 ~-----------------~~y~~ar~~y~~~------------------------~~~~~~---~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 150 L-----------------PIFQSSFQRYQQI------------------------QPLIRG---WSVKNAARLIDLEMEN 185 (493)
T ss_dssp H-----------------HHHHHHHHHHHHH------------------------HHHHHT---CSHHHHHHHHHHHHTC
T ss_pred h-----------------HHHHHHHHHHHHH------------------------HHHHhh---ccHHHHHHHHHHHhcC
Confidence 0 1112222222211 011100 0111222222221111
Q ss_pred C-------ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCH
Q 048766 246 N-------RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318 (525)
Q Consensus 246 ~-------~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (525)
+ ..+.+..+|++++.. .+.+...|...+.-+...|+.+.|..++++.... |.+...+...... .+.++
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~- 260 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEA- 260 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTH-
T ss_pred CccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhH-
Confidence 0 012344455555443 2334444554555555555555555555555555 3232222211111 00010
Q ss_pred HHHHHHHHhc------------cCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcC-CCCC
Q 048766 319 EIADSMFRSL------------CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIP 385 (525)
Q Consensus 319 ~~A~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~ 385 (525)
....+.+.. .......|...+..+.+.++.+.|..+|+++ ... .++...|......-.. .++
T Consensus 261 -~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d- 335 (493)
T 2uy1_A 261 -VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGS- 335 (493)
T ss_dssp -HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCC-
T ss_pred -HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCC-
Confidence 011111111 0111245777777777788899999999998 422 2344444432222111 234
Q ss_pred cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
.+.|..+|+...+.+ +.++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.
T Consensus 336 ~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 336 RATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 899999999998753 2345566777888888999999999999973 356677777777777899999999998887
Q ss_pred h
Q 048766 466 K 466 (525)
Q Consensus 466 ~ 466 (525)
+
T Consensus 412 ~ 412 (493)
T 2uy1_A 412 D 412 (493)
T ss_dssp H
T ss_pred H
Confidence 5
No 120
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.98 E-value=4.3e-09 Score=83.23 Aligned_cols=98 Identities=13% Similarity=-0.057 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
...+..++..+.+.|++++|+..|+++ .. +.+...|..++.++...|++++|+..|+++++.+|+++.++..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 455666777788888888888888876 22 3356677778888888888888888888888888888888888888888
Q ss_pred hccChhHHHHHHHHHHHcCC
Q 048766 484 SHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~ 503 (525)
..|++++|...+++..+..+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 88888888888888776543
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.98 E-value=8.5e-08 Score=81.56 Aligned_cols=172 Identities=8% Similarity=-0.062 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc-CCCHhHHHHHHHHHHhcC----ChhHHHHHHHHHh
Q 048766 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC-RKNLVTWNAMITGYARNG----DLTKVIELFEQLK 360 (525)
Q Consensus 286 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~ 360 (525)
|...|....+.| ++..+..+...|...+++++|...|++.. ..++..+..+...|.. + ++++|+++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444455555443 44555566666767777777777777765 3455667777777776 5 7888888888887
Q ss_pred hCCCCCCCHhHHHHHHHHHcC----CCCCcchHHHHHHHhhhhhCCCCC---hhHHHHHHHHHhc----cCChHHHHHHH
Q 048766 361 TVRDLQPDSVTFLNVLAACSH----TDIPFDKVSEYFESMTKDYGIKPT---VEHCCSMIRLMGQ----KGEVWRAQRMI 429 (525)
Q Consensus 361 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~ 429 (525)
+.| +...+..+...|.. .++ +++|.++|++..+. .|+ +..+..|...|.. .+++++|+..|
T Consensus 81 ~~g----~~~a~~~Lg~~y~~g~g~~~d-~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 81 EAG----SKSGEIVLARVLVNRQAGATD-VAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HTT----CHHHHHHHHHHHTCGGGSSCC-HHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HCC----CHHHHHHHHHHHHcCCCCccC-HHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 744 45566667777766 666 89999999888743 442 6778888888887 78899999999
Q ss_pred HHh-CCCCchhHHHHHHHHHhcC-C-----ChHHHHHHHHHHHhhcC
Q 048766 430 REL-GFGSYGVVWRALLSASGAC-S-----DLDVARISAAEVIKLEG 469 (525)
Q Consensus 430 ~~~-~~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~p 469 (525)
++. ...+++..+..+...|..- | ++++|+..|+++.+.++
T Consensus 153 ~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 987 3334566777777777542 3 89999999999999874
No 122
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.96 E-value=1.6e-08 Score=87.15 Aligned_cols=186 Identities=8% Similarity=-0.082 Sum_probs=133.9
Q ss_pred CHHHHHHHHHHhccccchHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCCCHHHHHHHHHhcc--CCC-H---hHHH
Q 048766 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD--ASIVVASALLDMYSKCGQVEIADSMFRSLC--RKN-L---VTWN 337 (525)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~---~~~~ 337 (525)
+...+..+...+...|++++|...|+.+.+.... .....+..+..+|.+.|++++|...|+.+. .|+ . ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455666777889999999999999999987532 234677888999999999999999999986 232 2 2455
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhh
Q 048766 338 AMITGYAR------------------NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKD 399 (525)
Q Consensus 338 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 399 (525)
.+..++.. .|++++|+..|+++.+ ..|+...... +......+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~--------------a~~~l~~~~~~ 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTD--------------ATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHH--------------HHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHH--------------HHHHHHHHHHH
Confidence 55666654 5789999999999998 5676432111 11111111110
Q ss_pred hCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChh
Q 048766 400 YGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY 473 (525)
Q Consensus 400 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 473 (525)
.......++..|.+.|++++|+..|+++ ...|+ ...+..++.++.+.|++++|++.++++....|++..
T Consensus 146 -----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 146 -----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 0112245678899999999999999987 22233 356888899999999999999999999998886543
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.96 E-value=2.2e-08 Score=87.12 Aligned_cols=184 Identities=10% Similarity=-0.016 Sum_probs=124.5
Q ss_pred cCCCHHHHHHHHHhcc---CCCHhHHHHH-------HHHHHhcCChhHHHHHHHHHhhCCCCCCCH--------------
Q 048766 314 KCGQVEIADSMFRSLC---RKNLVTWNAM-------ITGYARNGDLTKVIELFEQLKTVRDLQPDS-------------- 369 (525)
Q Consensus 314 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-------------- 369 (525)
..++...|.+.|.++. +.....|..+ ..++...++..+++..+++..+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~---l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ---ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT---CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc---CChhhhhhhhccCCccccc
Confidence 4677777888887776 2344567666 4556666666666666666555 33321
Q ss_pred --------hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCc----
Q 048766 370 --------VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY---- 437 (525)
Q Consensus 370 --------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---- 437 (525)
.....+...+...|+ +++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~-y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGN-YADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTC-HHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCC-HHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence 112234556667777 88888888777642 45433666666777888888888888877633332
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc--CC-ChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 438 GVVWRALLSASGACSDLDVARISAAEVIKLE--GD-SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 438 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
...+..+..++...|++++|+..|+++.... |. .+.+...++.++.+.|+.++|..+|+++....+.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 2356677778888888888888888887533 43 4457778888888888888888888888877654
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.94 E-value=6.6e-09 Score=85.75 Aligned_cols=122 Identities=9% Similarity=0.037 Sum_probs=86.3
Q ss_pred cCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHH-HhcCCCh--
Q 048766 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSA-SGACSDL-- 454 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~-~~~~~~~-- 454 (525)
...|+ +++|...++...+. .+.+...+..++..|...|++++|...++++ .. +.+...+..++.. +...|++
T Consensus 21 ~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQN-PEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C------CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccC-HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 44566 77787777777653 1335667777788888888888888888775 22 2345566667777 6677887
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 455 DVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 455 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
++|+..++++++.+|+++.++..++.++...|++++|...++++.+..+.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 88888888888888888888888888888888888888888888776554
No 125
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.93 E-value=6.7e-09 Score=79.36 Aligned_cols=96 Identities=14% Similarity=-0.053 Sum_probs=84.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
.+..++..+.+.|++++|+..+++. ...| +...|..++.++...|++++|+..++++++++|+++.++..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4566788899999999999999987 3334 5778889999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHHcCC
Q 048766 486 GNWDVASVMRNFMRERGL 503 (525)
Q Consensus 486 g~~~~A~~~~~~~~~~~~ 503 (525)
|++++|+..+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887644
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.93 E-value=2.1e-08 Score=81.58 Aligned_cols=127 Identities=6% Similarity=-0.057 Sum_probs=97.4
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHH
Q 048766 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSAS 448 (525)
Q Consensus 371 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~ 448 (525)
.+..+...+...|+ +++|...+++..+. .+.+...+..++..+...|++++|+..+++. .. +.+...+..++..+
T Consensus 15 ~~~~~a~~~~~~~~-~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKD-YENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555566666777 77777777777653 1235667777778888888888888888775 22 33466788888999
Q ss_pred hcCCChHHHHHHHHHHHhhcCCChhHHHHHHHH--HhhccChhHHHHHHHHHHH
Q 048766 449 GACSDLDVARISAAEVIKLEGDSDYVYVMLCNL--YTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 449 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 500 (525)
...|++++|+..++++++..|+++..+..+..+ +...|++++|+..+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998888554444 8889999999999987755
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.91 E-value=1.3e-08 Score=78.62 Aligned_cols=97 Identities=10% Similarity=-0.032 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
...+..++..+.+.|++++|+..|++. .. +.+...|..++.++...|++++|+..++++++.+|+++.++..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345667777888888888888888876 22 3346777888888888888888888888888888888888888888888
Q ss_pred hccChhHHHHHHHHHHHcC
Q 048766 484 SHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~ 502 (525)
..|++++|...+++..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 8888888888888887755
No 128
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.90 E-value=1.6e-08 Score=75.86 Aligned_cols=101 Identities=12% Similarity=-0.043 Sum_probs=88.7
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC--ChhHHHHHHH
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD--SDYVYVMLCN 480 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 480 (525)
+...+..++..+.+.|++++|...+++. . .+.+...+..++..+...|++++|+..++++++..|+ ++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4567788889999999999999999986 2 2345677888999999999999999999999999999 9999999999
Q ss_pred HHhhc-cChhHHHHHHHHHHHcCCcc
Q 048766 481 LYTSH-GNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 481 ~~~~~-g~~~~A~~~~~~~~~~~~~~ 505 (525)
++... |++++|.+.+++..+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999 99999999999998876643
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.90 E-value=4.4e-09 Score=93.96 Aligned_cols=190 Identities=7% Similarity=-0.075 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHH
Q 048766 302 IVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLA 377 (525)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 377 (525)
...+..+...+.+.|++++|...|+... +.+...|..+...|.+.|++++|+..+++..+ ..| +...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 4455566677777778888877777765 33566777788888888888888888888877 455 4566777777
Q ss_pred HHcCCCCCcchHHHHHHHhhhhhCCCCCh-hHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHH
Q 048766 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTV-EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456 (525)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 456 (525)
++...|+ +++|...|++..+. .|+. ..+...+....+..+...... .......++......+.. + ..|++++
T Consensus 81 ~~~~~g~-~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMES-YDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCC-HHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 7888887 88888888877653 2211 111112222211111111111 122222333333333322 2 2689999
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhhc-cChhHHHHHHHHHHHc
Q 048766 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSH-GNWDVASVMRNFMRER 501 (525)
Q Consensus 457 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 501 (525)
|++.++++++.+|++......+...+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999998888888888777776 7899999999988664
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.87 E-value=1.3e-08 Score=93.51 Aligned_cols=145 Identities=10% Similarity=-0.004 Sum_probs=109.5
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHH
Q 048766 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411 (525)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 411 (525)
+...+..+...+.+.|++++|+..|++..+ ..|+...+ . .+.+.+.- +.....|..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~-----------~-~~~~~~~~---------~~~~~~~~n 201 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS---WLEYESSF-----------S-NEEAQKAQ---------ALRLASHLN 201 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HTTTCCCC-----------C-SHHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HhhccccC-----------C-hHHHHHHH---------HHHHHHHHH
Confidence 345677777777778888888888888777 44443110 1 11111111 012467888
Q ss_pred HHHHHhccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChh
Q 048766 412 MIRLMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD 489 (525)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 489 (525)
++.+|.+.|++++|+..++++ ... .+...+..++.++...|++++|+..|+++++++|+++.++..++.++...|+++
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999987 333 357788899999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHH
Q 048766 490 VA-SVMRNFMRE 500 (525)
Q Consensus 490 ~A-~~~~~~~~~ 500 (525)
+| ...+++|.+
T Consensus 282 ~a~~~~~~~~~~ 293 (336)
T 1p5q_A 282 AREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 99 456666643
No 131
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.87 E-value=2.1e-07 Score=89.85 Aligned_cols=353 Identities=10% Similarity=-0.009 Sum_probs=187.8
Q ss_pred ccC-ChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccC--CChhhHHHHHHHHHhCCC-hHHHHH
Q 048766 116 QLG-SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID--KDIISWNSVIAASARNGN-LELAFG 191 (525)
Q Consensus 116 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~a~~ 191 (525)
+.| +++.|..+|+.+...- |. |+++.+..+|+.... |++..|...+.-..+.+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 346 4788888888887652 32 899999999999966 688888888877666553 344555
Q ss_pred HHhcC------CCCCcchHHHHHHHHH----hcCChHHHHHHHhcCCCCCcccHHHHHHHHHh---cC------------
Q 048766 192 FLHRL------PNPDTISYNEVINGIA----QFGDIEDAIMILSSMPSPNSSSWNSILTGYVN---RN------------ 246 (525)
Q Consensus 192 ~~~~~------~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---~~------------ 246 (525)
+|+.. ...+...|...+..+. ..++++.+.++|++........+..+-..|.. ..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 55554 1234566766666543 24567788888887764211212222222211 11
Q ss_pred --ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccc--c-----chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCC
Q 048766 247 --RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL--S-----ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317 (525)
Q Consensus 247 --~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 317 (525)
.+..|..+++++...--..+...|...+.--... + ..+.+..+|+.++... +....++...+..+.+.|+
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~ 228 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQ 228 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 1222333333333210001222333333322111 0 1234556677766654 4446666666666777777
Q ss_pred HHHHHHHHHhccC-C-CHhHHHHHHHHHHhcCChhHHHHHHHHHhhC---C-----CCCCC---HhHHHHHHHHHcCCCC
Q 048766 318 VEIADSMFRSLCR-K-NLVTWNAMITGYARNGDLTKVIELFEQLKTV---R-----DLQPD---SVTFLNVLAACSHTDI 384 (525)
Q Consensus 318 ~~~A~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-----~~~p~---~~~~~~l~~~~~~~~~ 384 (525)
.+.|..+++.... | +...|. .|....+.++. ++.+.+. . ...+. ...|...+....+.++
T Consensus 229 ~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 229 KEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 7777777776542 2 211222 12221111221 2222211 0 00111 2334455555555566
Q ss_pred CcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccC-ChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHH
Q 048766 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG-EVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISA 461 (525)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 461 (525)
.+.|..+|+++ +. . ..+...|...+..-...| +.+.|..+|+.. ..+.++..|..++......|+.+.|..+|
T Consensus 302 -~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 302 -LELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp -HHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -HHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78888888777 32 1 223344443333333333 578888888775 22222344555666666678888888888
Q ss_pred HHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 462 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
+++ +.+...|...+..-...|+.+.+..++++..+
T Consensus 378 er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 378 KRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 877 33566677777777777888888888777764
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.87 E-value=3.3e-08 Score=76.86 Aligned_cols=115 Identities=10% Similarity=-0.024 Sum_probs=66.1
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHH
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLS 446 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~ 446 (525)
...+..+...+...|+ +++|.+.+++..+. .+.+...+..++..|...|++++|+..+++. .. +.+...+..++.
T Consensus 16 ~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGD-YPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTC-SHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3444455555555555 55555555555431 1123455555555555666666666665554 11 223455666666
Q ss_pred HHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 447 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
.+...|++++|+..++++++..|.+...+..++.++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 6666777777777777777777666666666666666554
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.86 E-value=3e-08 Score=76.78 Aligned_cols=117 Identities=9% Similarity=-0.009 Sum_probs=85.4
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHH
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLS 446 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~ 446 (525)
...+..+...+...|+ +++|...++++.+. .+.+...+..++..+...|++++|...+++. .. +.+...+..++.
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVEN-FEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccC-HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 3455556666666676 77777777776643 1234566677777777777777777777765 22 234567777888
Q ss_pred HHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccCh
Q 048766 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW 488 (525)
Q Consensus 447 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 488 (525)
.+...|++++|...++++++..|+++.++..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 888888999999999999988888888888888888888775
No 134
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.85 E-value=1.7e-06 Score=77.12 Aligned_cols=231 Identities=6% Similarity=-0.056 Sum_probs=167.1
Q ss_pred hcCC-hhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcccc--chHHHHHHHHHHHHhCCCchHHHHHHHHHHH----HcC-
Q 048766 244 NRNR-VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS--ALTWGMLIHSCVIKQGLDASIVVASALLDMY----SKC- 315 (525)
Q Consensus 244 ~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 315 (525)
+.|. .++|+++++.++..+ +-+...|+.--.++...+ ++++++.+++.+...+ +-+..+++.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 4444 468888888888752 234445566566666667 8888999888888876 44445555444444 444
Q ss_pred --CCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChh--HHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCC--
Q 048766 316 --GQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLT--KVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIP-- 385 (525)
Q Consensus 316 --g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~-- 385 (525)
++++++.++++.+. +.|..+|+.-.-.+.+.|+++ ++++.++++.+ ..| |...|+.-...+...+..
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID---TDLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccch
Confidence 78899999999886 567778888888888888888 99999999998 445 566676655555555421
Q ss_pred ---cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHH-HHHHHHHh-CC----CCchhHHHHHHHHHhcCCChHH
Q 048766 386 ---FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR-AQRMIREL-GF----GSYGVVWRALLSASGACSDLDV 456 (525)
Q Consensus 386 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~ 456 (525)
++++++.++.+... -+-|...|+.+...+.+.|+..+ +..+.+++ .. ..++..+..++..+.+.|+.++
T Consensus 199 ~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 67788888888753 23367888888888888888555 55566665 21 3356788888999999999999
Q ss_pred HHHHHHHHHh-hcCCChhHHHHHHHH
Q 048766 457 ARISAAEVIK-LEGDSDYVYVMLCNL 481 (525)
Q Consensus 457 A~~~~~~~~~-~~p~~~~~~~~l~~~ 481 (525)
|+++++.+.+ .+|.....|...+..
T Consensus 277 A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 277 SRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHHhccChHHHHHHHHHHhh
Confidence 9999999997 799887777765543
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.84 E-value=4.9e-08 Score=74.81 Aligned_cols=115 Identities=16% Similarity=0.097 Sum_probs=76.4
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHH
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLS 446 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~ 446 (525)
...+..+...+...|+ +++|.++++++.+. .+.+...+..++..+.+.|++++|...++++ ..+.+...+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGD-YDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 3455555666666666 67777766666543 1234556666667777777777777777665 12234556667777
Q ss_pred HHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 447 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
.+...|++++|...++++++..|+++..+..++.++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 7777888888888888888888877777777777766544
No 136
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.84 E-value=4.8e-08 Score=76.50 Aligned_cols=100 Identities=10% Similarity=-0.066 Sum_probs=79.3
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 048766 404 PTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNL 481 (525)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 481 (525)
.++..+..++..+...|++++|+..|++. .. +.+...+..++..+...|++++|+..++++++.+|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777888888888888888888875 22 23466777788888888888888888888888888888888888888
Q ss_pred HhhccChhHHHHHHHHHHHcCC
Q 048766 482 YTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+...|++++|...+++..+..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHCh
Confidence 8888888888888888876544
No 137
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.83 E-value=3.1e-08 Score=80.49 Aligned_cols=109 Identities=13% Similarity=0.035 Sum_probs=86.5
Q ss_pred CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHH
Q 048766 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALL 445 (525)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~ 445 (525)
+...+..+...+...|+ +++|++.|++..+. .+.+...|..++.+|.+.|++++|+..+++. ...| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKE-YSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45667777888888888 99999999988754 1336778888888999999999999998886 3333 467788888
Q ss_pred HHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 446 SASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
..+...|++++|+..|+++++++|+++..+...+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 8888899999999999999999998887665444
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.83 E-value=1.3e-08 Score=80.97 Aligned_cols=116 Identities=7% Similarity=-0.088 Sum_probs=90.7
Q ss_pred HHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-
Q 048766 355 LFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL- 432 (525)
Q Consensus 355 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 432 (525)
.++++.+ ..|+ ...+..+...+...|+ +++|...|+.+... -+.++..|..++.+|...|++++|+..|+++
T Consensus 9 ~~~~al~---~~p~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 9 TIAMLNE---ISSDTLEQLYSLAFNQYQSGX-YEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp SHHHHTT---CCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHc---CCHhhHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4555555 5563 4566677778888888 99999999888753 1336777888888999999999999999886
Q ss_pred CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 433 GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 433 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
... .++..+..++.++...|++++|+..|++++++.|+++....
T Consensus 83 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 83 VMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 323 34677888999999999999999999999999998776643
No 139
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.83 E-value=1.6e-07 Score=79.89 Aligned_cols=131 Identities=10% Similarity=-0.032 Sum_probs=96.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCC
Q 048766 304 VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHT 382 (525)
Q Consensus 304 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 382 (525)
.+..+...+...|++++|...|++...++...|..+...|...|++++|+..+++..+ ..| +...+..+...+...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN---RDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHc
Confidence 3455667777888888888888888877778888888888888888888888888877 344 466777777888888
Q ss_pred CCCcchHHHHHHHhhhhhCCC-------------C-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCch
Q 048766 383 DIPFDKVSEYFESMTKDYGIK-------------P-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYG 438 (525)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~~~~-------------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 438 (525)
|+ +++|.+.|+++.+...-. | ....+..++.+|.+.|++++|...+++. ...|+.
T Consensus 85 ~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 85 EK-YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TC-HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cc-HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 88 888888888877531111 1 1266777888888888888888888876 444543
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.82 E-value=6.7e-08 Score=75.11 Aligned_cols=101 Identities=12% Similarity=-0.037 Sum_probs=90.9
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 048766 404 PTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNL 481 (525)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 481 (525)
.+...+..++..+.+.|++++|...+++. ...| +...+..++..+...|++++|+..++++++..|+++.++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35677888999999999999999999987 4444 577888899999999999999999999999999999999999999
Q ss_pred HhhccChhHHHHHHHHHHHcCCc
Q 048766 482 YTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
+...|++++|...+++..+..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhhHHHHHHHHHHHHHhCCC
Confidence 99999999999999999887543
No 141
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.82 E-value=2.6e-08 Score=76.78 Aligned_cols=96 Identities=3% Similarity=-0.105 Sum_probs=77.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh-------hHHHH
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD-------YVYVM 477 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~ 477 (525)
..+..++..+.+.|++++|++.|++. ...| +...|..++.+|...|++++|++.++++++++|+++ .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667888888999999999999886 3334 466788888889999999999999999999887554 36777
Q ss_pred HHHHHhhccChhHHHHHHHHHHHcC
Q 048766 478 LCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
++.++...|++++|++.|++..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8888888999999999998887654
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.81 E-value=4.3e-09 Score=88.68 Aligned_cols=170 Identities=7% Similarity=-0.041 Sum_probs=103.9
Q ss_pred HHHcCCCHHHHHHHHHhccC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcc
Q 048766 311 MYSKCGQVEIADSMFRSLCR---KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387 (525)
Q Consensus 311 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 387 (525)
.....|+++.+.+.++.-.. .....+..+...+...|++++|+..|++..+ ..|+...+ .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~~~~~~~--------------~ 75 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD---FFIHTEEW--------------D 75 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTTTCTTC--------------C
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHhccccc--------------c
Confidence 33444555555555543321 1234566666777777777777777777776 33332111 0
Q ss_pred hHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 388 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
.. ....-.. ......+..++.+|.+.|++++|+..+++. .. +.+...+..++.++...|++++|+..|++++
T Consensus 76 ~~--~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 76 DQ--ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp CH--HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hh--hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 00 0000000 001356778888899999999999999886 22 3456788889999999999999999999999
Q ss_pred hhcCCChhHHHHHHHHHhhccChhHHH-HHHHHHHHcCC
Q 048766 466 KLEGDSDYVYVMLCNLYTSHGNWDVAS-VMRNFMRERGL 503 (525)
Q Consensus 466 ~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~ 503 (525)
+..|+++.++..++.++...|+.+++. ..+..+...+.
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999888 66666655443
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.80 E-value=1.2e-07 Score=82.44 Aligned_cols=139 Identities=11% Similarity=-0.037 Sum_probs=104.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC--hhHHHHHH
Q 048766 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT--VEHCCSMI 413 (525)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~ 413 (525)
+-.+...+...|++++|.++|+.+.. ..|+......+...+.+.++ +++|+..|+..... . .|. ...+..+.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r-~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG 178 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAER-WTDVIDQVKSAGKW-P-DKFLAGAAGVAHG 178 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTC-HHHHHHHHTTGGGC-S-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCC-HHHHHHHHHHhhcc-C-CcccHHHHHHHHH
Confidence 34456777888999999999988877 45654455566667788888 99999999866431 1 111 34677888
Q ss_pred HHHhccCChHHHHHHHHHh--CCC-C--chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 048766 414 RLMGQKGEVWRAQRMIREL--GFG-S--YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNL 481 (525)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~--~~~-~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 481 (525)
.++.+.|++++|+..|++. +.. | ....+.....++.+.|+.++|...|+++++.+|+ +.+...|...
T Consensus 179 ~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 179 VAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 9999999999999999987 211 4 3446777888899999999999999999999997 7766666544
No 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.80 E-value=8.6e-09 Score=81.87 Aligned_cols=104 Identities=10% Similarity=-0.014 Sum_probs=83.6
Q ss_pred CCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhH
Q 048766 365 LQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVV 440 (525)
Q Consensus 365 ~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~ 440 (525)
+.|+ ...+..+...+...|+ +++|.+.|+++.+. .| ++..|..++.+|.+.|++++|+..|+++ ...| ++..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~ 106 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGR-IEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred CCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence 4554 4566677777888888 88999888888753 44 5778888888999999999999999886 3333 4678
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
|..++.++...|++++|+..|++++++.|+++
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 88899999999999999999999999999654
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.79 E-value=6.6e-08 Score=73.25 Aligned_cols=98 Identities=12% Similarity=-0.019 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
+..+..++..+...|++++|...+++. .. +.+...+..++..+...|++++|...++++++..|+++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345556666677777777777777765 22 2345566666667777777777777777777777777777777777777
Q ss_pred hccChhHHHHHHHHHHHcCC
Q 048766 484 SHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~ 503 (525)
..|++++|...+++..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 77777777777777665543
No 146
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1.4e-07 Score=74.87 Aligned_cols=99 Identities=16% Similarity=0.061 Sum_probs=67.0
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
+...+..++..+...|++++|+..+++. ...|+ ...+..+...+...|++++|+..++++++..|+++.++..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3455666666667777777777777665 44444 455666666677777777777777777777777777777777
Q ss_pred HHHhhccChhHHHHHHHHHHHcCC
Q 048766 480 NLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.++...|++++|...+++..+..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 777777777777777777666543
No 147
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=1.6e-06 Score=77.98 Aligned_cols=161 Identities=8% Similarity=-0.073 Sum_probs=121.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHhccCC---CHh------HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC----HhHHH
Q 048766 307 ALLDMYSKCGQVEIADSMFRSLCRK---NLV------TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD----SVTFL 373 (525)
Q Consensus 307 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~ 373 (525)
..+..+...|++++|..++++.... +.. .+..+...+...+++++|+..++++.+.....++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788899999999999987632 111 2334666777788999999999999884312223 23688
Q ss_pred HHHHHHcCCCCCcchHHHHHHHhhhhhC-C---CC-ChhHHHHHHHHHhccCChHHHHHHHHHh-------CCCCc-hhH
Q 048766 374 NVLAACSHTDIPFDKVSEYFESMTKDYG-I---KP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-------GFGSY-GVV 440 (525)
Q Consensus 374 ~l~~~~~~~~~~~~~a~~~~~~~~~~~~-~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~ 440 (525)
.+...|...|+ +++|..+++++.+... . .+ ...++..++..|.+.|++++|+..+++. +..+. ..+
T Consensus 160 ~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 160 AIANIYAENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 88889999999 9999999999875321 1 11 2347888999999999999999999875 11122 567
Q ss_pred HHHHHHHHhcCCC-hHHHHHHHHHHHhhc
Q 048766 441 WRALLSASGACSD-LDVARISAAEVIKLE 468 (525)
Q Consensus 441 ~~~l~~~~~~~~~-~~~A~~~~~~~~~~~ 468 (525)
+..++..+...|+ +++|++.+++++++.
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 8889999999994 699999999998754
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.76 E-value=1.1e-07 Score=72.83 Aligned_cols=98 Identities=17% Similarity=0.108 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
...+..++..+...|++++|.+.++++ . .+.+...+..++..+...|++++|+..++++++..|+++.++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999987 2 23456788889999999999999999999999999999999999999999
Q ss_pred hccChhHHHHHHHHHHHcCC
Q 048766 484 SHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~ 503 (525)
..|++++|...++++.+..+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999988754
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.75 E-value=4.4e-08 Score=77.32 Aligned_cols=113 Identities=10% Similarity=-0.110 Sum_probs=87.0
Q ss_pred CCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHH
Q 048766 365 LQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVW 441 (525)
Q Consensus 365 ~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~ 441 (525)
..|+ ...+..+...+...|+ +++|...|+.+... -+.++..|..++.+|.+.|++++|+..+++. .. +.++..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGK-WDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 4553 4455566677778888 88999888888753 1335777888888889999999999999886 22 3346677
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
..++.++...|++++|+..|+++++..|+++........
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 888999999999999999999999999988776554333
No 150
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.74 E-value=6.6e-08 Score=74.79 Aligned_cols=93 Identities=9% Similarity=-0.096 Sum_probs=64.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-CCCCc-h---hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC---hhHHHHHHHH
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-GFGSY-G---VVWRALLSASGACSDLDVARISAAEVIKLEGDS---DYVYVMLCNL 481 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 481 (525)
..++..+.+.|++++|...|+++ ...|+ . ..+..++..+...|++++|+..++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34556666777777777777765 22222 2 356666777777777777777777777777776 6667777777
Q ss_pred HhhccChhHHHHHHHHHHHcC
Q 048766 482 YTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~ 502 (525)
+...|++++|...++++.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 777777777777777776654
No 151
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=5.6e-07 Score=80.91 Aligned_cols=165 Identities=7% Similarity=-0.087 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhccC---CCH------hHHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCCC--H
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLCR---KNL------VTWNAMITGYARNGDLTKVIELFEQLKTVRD--LQPD--S 369 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~--~ 369 (525)
..+...+..+...|++++|.+.+....+ ... ..+..+...+...|++++|+..+++..+... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567788899999999998876642 111 2344456677888999999999999876321 1111 3
Q ss_pred hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-------
Q 048766 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-----VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS------- 436 (525)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~------- 436 (525)
.+++.+...|...|+ +++|..+++++.+.....|+ ..++..++..|.+.|++++|+..+++. ...+
T Consensus 156 ~~~~~lg~~y~~~~~-~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 156 YIENAIANIYAENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 478888899999999 99999999998732211222 257889999999999999999999986 1111
Q ss_pred chhHHHHHHHHHhcCCChHHH-HHHHHHHHhhc
Q 048766 437 YGVVWRALLSASGACSDLDVA-RISAAEVIKLE 468 (525)
Q Consensus 437 ~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~ 468 (525)
-..++..++..+...|++++| ...+++++.+.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 156788899999999999999 88899988754
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.73 E-value=6.9e-08 Score=75.71 Aligned_cols=96 Identities=16% Similarity=-0.024 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-------------hhHHHHHHHHHhcCCChHHHHHHHHHHHhh-----
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-------------GVVWRALLSASGACSDLDVARISAAEVIKL----- 467 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 467 (525)
..+...+..+.+.|++++|+..|++. ...|+ ...|..+..++.+.|++++|+..+++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34556667777888888888888875 22222 238888999999999999999999999999
Q ss_pred --cCCChhHH----HHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 468 --EGDSDYVY----VMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 468 --~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
+|++..+| ...+.++...|++++|+..|++..+..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999 999999999999999999999987753
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.72 E-value=1.6e-07 Score=72.61 Aligned_cols=99 Identities=10% Similarity=-0.099 Sum_probs=88.9
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
+...+..++..+...|++++|...+++. . .+.+...+..++..+...|++++|+..++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788899999999999999999987 2 2345778888999999999999999999999999999999999999999
Q ss_pred hhccChhHHHHHHHHHHHcCC
Q 048766 483 TSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~ 503 (525)
...|++++|...+++..+..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999988754
No 154
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.71 E-value=3.7e-07 Score=76.92 Aligned_cols=131 Identities=15% Similarity=0.041 Sum_probs=76.0
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh---CCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-------CCCC-
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDY---GIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-------GFGS- 436 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~- 436 (525)
...+..+...+...|+ +++|...+++..+.. +..+ ....+..++..|...|++++|...+++. +..+
T Consensus 26 ~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDR-FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 3444445555555555 555555555544311 0111 2344556666666667777666666654 1111
Q ss_pred -chhHHHHHHHHHhcCCChHHHHHHHHHHHhhc--CCCh----hHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 437 -YGVVWRALLSASGACSDLDVARISAAEVIKLE--GDSD----YVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 437 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
....+..+...+...|++++|...++++++.. ..++ .++..++.++...|++++|...+++..+
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 12345666677777788888888887777643 2222 2356777788888888888877777654
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.68 E-value=2.5e-07 Score=69.94 Aligned_cols=111 Identities=12% Similarity=0.009 Sum_probs=84.8
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCC-CchhHHHHHHH
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLS 446 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~ 446 (525)
...+..+...+...|+ +++|...++..... .+.++..+..++..+...|++++|...+++. ... .+...+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGN-IDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccc-HHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3445566666777777 88888888777653 1235667777888888888888888888876 222 34667888888
Q ss_pred HHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 447 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
.+...|++++|...++++++..|+++..+..++.+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999999999988888877664
No 156
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.67 E-value=3.7e-08 Score=74.74 Aligned_cols=82 Identities=12% Similarity=0.032 Sum_probs=42.8
Q ss_pred CChHHHHHHHHHh-CC---CCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHH
Q 048766 420 GEVWRAQRMIREL-GF---GSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494 (525)
Q Consensus 420 g~~~~A~~~~~~~-~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (525)
|++++|+..|++. .. .|+ ...+..++..+...|++++|+..++++++.+|+++.++..++.++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444455555443 22 122 334455555555556666666666666665565555555566666666666666665
Q ss_pred HHHHHHc
Q 048766 495 RNFMRER 501 (525)
Q Consensus 495 ~~~~~~~ 501 (525)
+++..+.
T Consensus 84 ~~~al~~ 90 (117)
T 3k9i_A 84 LLKIIAE 90 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=3.9e-07 Score=72.24 Aligned_cols=114 Identities=9% Similarity=-0.072 Sum_probs=90.0
Q ss_pred CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHH
Q 048766 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVW 441 (525)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~ 441 (525)
+...+..+...+...|+ +++|.+.|++..+ ..|+ ...+..++..|...|++++|+..+++. ...| +...+
T Consensus 27 ~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGD-YGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTC-HHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCC-HHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 45666677777778887 8888888888773 3555 567778888888888999988888876 2233 46778
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
..+...+...|++++|...++++++..|+++.++..+..+..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 88888999999999999999999999999988888877776543
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.66 E-value=2.6e-07 Score=71.08 Aligned_cols=111 Identities=5% Similarity=-0.098 Sum_probs=82.9
Q ss_pred hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHH
Q 048766 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSA 447 (525)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 447 (525)
..+......+...|+ +++|+..|++..+. .+.++..|..++.+|.+.|++++|+..+++. ...| +...+..++.+
T Consensus 5 ~~~~~~g~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSD-WPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 345556666677777 77777777777643 1234667777788888888888888888776 2233 46678888999
Q ss_pred HhcCCChHHHHHHHHHHHhhc------CCChhHHHHHHHHHh
Q 048766 448 SGACSDLDVARISAAEVIKLE------GDSDYVYVMLCNLYT 483 (525)
Q Consensus 448 ~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 483 (525)
+...|++++|+..++++++.+ |+++.+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999999999 888877777776654
No 159
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.66 E-value=1.5e-07 Score=77.47 Aligned_cols=126 Identities=10% Similarity=-0.001 Sum_probs=96.0
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHH-HhccCC
Q 048766 344 ARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL-MGQKGE 421 (525)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~ 421 (525)
...|++++|+..+++..+ ..| +...+..+...+...|+ +++|...|+++.+.. +.++..+..++.+ |...|+
T Consensus 21 ~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWQND-YSNSLLAYRQALQLR--GENAELYAALATVLYYQASQ 94 (177)
T ss_dssp C-----CCCCHHHHHHHH---HCCSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTT
T ss_pred hhccCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCC
Confidence 456788888888888877 344 56777888888888888 999999998887641 3356777788888 778888
Q ss_pred h--HHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHH
Q 048766 422 V--WRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475 (525)
Q Consensus 422 ~--~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 475 (525)
+ ++|...++++ ...| +...+..++..+...|++++|+..++++++..|+++...
T Consensus 95 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8 9999999886 3233 467788888999999999999999999999999776543
No 160
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.64 E-value=1.6e-07 Score=76.09 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 439 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
..|..++.++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...|++..+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 3445555555555666666666666666666556666666666666666666666665555543
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.63 E-value=3.2e-07 Score=77.35 Aligned_cols=154 Identities=10% Similarity=0.009 Sum_probs=99.8
Q ss_pred cCCCHHHHHH---HHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCC---CCC-CHhHHHHHHHHHcCCCCCc
Q 048766 314 KCGQVEIADS---MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD---LQP-DSVTFLNVLAACSHTDIPF 386 (525)
Q Consensus 314 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~p-~~~~~~~l~~~~~~~~~~~ 386 (525)
..|++++|.+ .+..-+.....++..+...+...|++++|+..+++..+... ..| ...++..+...+...|+ +
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN-W 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-H
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC-H
Confidence 4566666666 44332223445666677777777777777777776655110 112 24556667777778887 8
Q ss_pred chHHHHHHHhhhhhCCCC-C----hhHHHHHHHHHhccCChHHHHHHHHHh------CCCCc--hhHHHHHHHHHhcCCC
Q 048766 387 DKVSEYFESMTKDYGIKP-T----VEHCCSMIRLMGQKGEVWRAQRMIREL------GFGSY--GVVWRALLSASGACSD 453 (525)
Q Consensus 387 ~~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~--~~~~~~l~~~~~~~~~ 453 (525)
++|.+.+++..+...-.+ + ...+..++..+...|++++|...+++. ...+. ...+..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 888888877665321122 2 345677788888889999998888875 11122 2345677888889999
Q ss_pred hHHHHHHHHHHHhhc
Q 048766 454 LDVARISAAEVIKLE 468 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~ 468 (525)
+++|.+.+++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998865
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.63 E-value=5.2e-06 Score=74.81 Aligned_cols=33 Identities=9% Similarity=0.029 Sum_probs=27.2
Q ss_pred CCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 469 GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 469 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
+.++.++..|+.+|...|+.++|.++++.+.+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 457788888999999999999999999887543
No 163
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.62 E-value=4.1e-07 Score=73.72 Aligned_cols=99 Identities=11% Similarity=-0.066 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
...+..++..+...|++++|...+++. .. +.+...+..++..+...|++++|+..++++++..|+++.++..++.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 445777888999999999999999986 22 3457788889999999999999999999999999999999999999999
Q ss_pred hccChhHHHHHHHHHHHcCCc
Q 048766 484 SHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~~ 504 (525)
..|++++|...++++.+..+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~ 113 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH 113 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT
T ss_pred HhccHHHHHHHHHHHHHhCCC
Confidence 999999999999999887553
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.62 E-value=3.2e-07 Score=74.36 Aligned_cols=100 Identities=10% Similarity=-0.066 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
+...+..++..+.+.|++++|+..|++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4566778888888899999999998886 3233 5677888888888899999999999999999998888899999999
Q ss_pred hhccChhHHHHHHHHHHHcCCc
Q 048766 483 TSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
...|++++|+..|++..+..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999988888776543
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.61 E-value=2.5e-07 Score=71.49 Aligned_cols=108 Identities=6% Similarity=-0.074 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC----CCc----hhHH
Q 048766 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF----GSY----GVVW 441 (525)
Q Consensus 371 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~~~----~~~~ 441 (525)
.+..+...+...|+ +++|...+++..+. .+.+...+..++..|...|++++|...+++. .. .++ ...+
T Consensus 6 ~~~~l~~~~~~~~~-~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 6 KEKELGNDAYKKKD-FDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34444445555555 55555555555432 1223444555555555555555555555543 11 111 3344
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
..++..+...|++++|...++++++..| ++.....+..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 4455555555555555555555555555 344444444443
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.58 E-value=2.1e-05 Score=70.56 Aligned_cols=116 Identities=9% Similarity=0.019 Sum_probs=65.9
Q ss_pred HhcCChh-HHHHHHHHHhhCCCCCCH-HHHHHHHHHhccccc----------hHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 048766 243 VNRNRVP-EALHLFGEMQSKDVPMDE-YTFSTMLSGIAGLSA----------LTWGMLIHSCVIKQGLDASIVVASALLD 310 (525)
Q Consensus 243 ~~~~~~~-~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 310 (525)
.+.|.++ +|+++++.++.. .|+. ..|+.--..+...+. ++++..++..+.... +-+..+++.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455554 788888888875 3443 333332222222222 456666666666654 445555555555
Q ss_pred HHHcCC--CHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCC-hhHHHHHHHHHhh
Q 048766 311 MYSKCG--QVEIADSMFRSLC---RKNLVTWNAMITGYARNGD-LTKVIELFEQLKT 361 (525)
Q Consensus 311 ~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 361 (525)
++.+.| .++++..+++.+. +.|..+|+.-.-.+...|. ++++++.++++.+
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~ 173 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 555555 3666666666665 3455566665555556666 4667777777666
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.58 E-value=1.1e-07 Score=80.08 Aligned_cols=120 Identities=11% Similarity=-0.084 Sum_probs=90.3
Q ss_pred CCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh----CCCCc--------------hhHHH
Q 048766 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSY--------------GVVWR 442 (525)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~--------------~~~~~ 442 (525)
..+. ++++.+.|+..... .......+..++..+.+.|++++|+..|++. +..|+ ...+.
T Consensus 16 ~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 16 NLYF-QGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhh-ccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3344 55555555432221 1113455677788888999999999999886 22221 26788
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 443 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.++.++...|++++|+..++++++.+|+++.++..++.+|...|++++|+..|++..+..+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 8899999999999999999999999999999999999999999999999999999987754
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.57 E-value=5.7e-07 Score=70.26 Aligned_cols=115 Identities=8% Similarity=-0.103 Sum_probs=86.6
Q ss_pred CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHH
Q 048766 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALL 445 (525)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~ 445 (525)
+...+..+...+...|+ +++|...|+...+. .+.+...+..++..|...|++++|+..+++. .. +.+...+..++
T Consensus 8 ~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRK-YPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCc-HHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 56677777777888887 88888888887753 1234677788888888888888888888876 22 33467788889
Q ss_pred HHHhcCCChHHHHHHHHHHHhhcCC-----ChhHHHHHHHHHhhc
Q 048766 446 SASGACSDLDVARISAAEVIKLEGD-----SDYVYVMLCNLYTSH 485 (525)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~ 485 (525)
..+...|++++|+..++++++..|+ +......+..+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999886 555555555554443
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.7e-06 Score=82.72 Aligned_cols=165 Identities=12% Similarity=-0.080 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH---hHHHHHHH-HHcCCCCCcchHHHHHHHhhhhh---CCCC-Ch
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS---VTFLNVLA-ACSHTDIPFDKVSEYFESMTKDY---GIKP-TV 406 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~-~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~ 406 (525)
++..++..|...|++++|.+.+..+.+.....++. ......+. .+...|. ++.+.++++...... +..+ ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDS-LDDQIFVCEKSIEFAKREKRVFLKH 135 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSC-HHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHhCccHHHH
Confidence 36678888999999999999888876522112222 12223333 3445566 899999888765431 2222 25
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh-----C--CCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc---CCC----
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL-----G--FGSY-GVVWRALLSASGACSDLDVARISAAEVIKLE---GDS---- 471 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~---- 471 (525)
.++..++..|...|++++|..+++++ + ..+. ...+..++..|...|++++|...+++++... |++
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 57788999999999999999999876 1 1222 4567788899999999999999999998865 322
Q ss_pred hhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
...+..++..+...|++++|...+.+..+
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 24466788889999999999998887765
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.56 E-value=1.9e-05 Score=70.85 Aligned_cols=214 Identities=10% Similarity=0.020 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCC----------HHHHHHHHHhcc---CCCHhHHHHHHHHHHhcC--C
Q 048766 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ----------VEIADSMFRSLC---RKNLVTWNAMITGYARNG--D 348 (525)
Q Consensus 284 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~ 348 (525)
++|+.....+...+ |.+..+++.--.++...+. ++++..+++.+. +.+..+|+.-...+...+ +
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 46788888888766 4444555543333333332 567888888776 567788888877777877 4
Q ss_pred hhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhcc--------
Q 048766 349 LTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK-------- 419 (525)
Q Consensus 349 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 419 (525)
+++++.+++++.+ ..| |...|+.-...+...|..++++++.++.+.+. -+-|...|+....++.+.
T Consensus 126 ~~~EL~~~~k~l~---~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 126 WARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp HHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC----
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcccccc
Confidence 8999999999999 455 66777766666666676238999999999864 233566777666666554
Q ss_pred ------CChHHHHHHHHHh--CCCCchhHHHHHHHHHhcC-----------CChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 420 ------GEVWRAQRMIREL--GFGSYGVVWRALLSASGAC-----------SDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 420 ------g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
+.++++++.+... ..+.|..+|..+...+... +.++++++.++++++.+|++.-.+..++.
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~ 280 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 280 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHH
Confidence 4578888888876 3234456666555444443 45889999999999999988655554443
Q ss_pred HH---hhccChhHHHHHHHHHHHcCC
Q 048766 481 LY---TSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 481 ~~---~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.. ...|..+++...++++.+..+
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 281 LMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHhhcccccHHHHHHHHHHHHHhCc
Confidence 32 246788899999999987654
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.55 E-value=5.8e-07 Score=86.23 Aligned_cols=144 Identities=7% Similarity=-0.018 Sum_probs=100.1
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHH
Q 048766 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412 (525)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 412 (525)
...|..+...+.+.|++++|+..|++..+ ..|+...+ . .+... ... ......|..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~----------~--~~~~~----~~~-----~~~~~~~~nl 323 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS---WLEMEYGL----------S--EKESK----ASE-----SFLLAAFLNL 323 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHTTCCSC----------C--HHHHH----HHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH---HhcccccC----------C--hHHHH----HHH-----HHHHHHHHHH
Confidence 34566666677777777777777777666 33332110 0 01100 000 0124678888
Q ss_pred HHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhH
Q 048766 413 IRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
+.+|.+.|++++|+..++++ .. +.+...+..++.+|...|++++|+..|+++++++|++..++..++.++.+.|++++
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 32 33577888999999999999999999999999999999999999999999999998
Q ss_pred HHH-HHHHHHH
Q 048766 491 ASV-MRNFMRE 500 (525)
Q Consensus 491 A~~-~~~~~~~ 500 (525)
|.+ .+.+|..
T Consensus 404 a~~~~~~~~f~ 414 (457)
T 1kt0_A 404 RDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 874 4555543
No 172
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.54 E-value=1.8e-07 Score=85.82 Aligned_cols=151 Identities=9% Similarity=-0.066 Sum_probs=83.5
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHH
Q 048766 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412 (525)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 412 (525)
...+..+...+.+.|++++|+..|++... ..|+... +...++ .+++...+. ...|..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~-------~~~~~~-~~~~~~~l~-----------~~~~~nl 236 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFM-------FQLYGK-YQDMALAVK-----------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHH-------HTCCHH-HHHHHHHHH-----------THHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccchh-------hhhccc-HHHHHHHHH-----------HHHHHHH
Confidence 34566677777788888888888888888 5665442 223333 333332221 1367888
Q ss_pred HHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHH-HhhccChh
Q 048766 413 IRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNL-YTSHGNWD 489 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~ 489 (525)
+.+|.+.|++++|+..+++. ...| +...|..++.++...|++++|+..|+++++++|+++.++..|..+ ....+..+
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 3334 577888999999999999999999999999999999999999888 44567888
Q ss_pred HHHHHHHHHHHcCCcc
Q 048766 490 VASVMRNFMRERGLRK 505 (525)
Q Consensus 490 ~A~~~~~~~~~~~~~~ 505 (525)
++...|.+|.+..+..
T Consensus 317 ~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEG 332 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHhhCCCCCC
Confidence 8899999887765543
No 173
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.53 E-value=3.9e-05 Score=69.14 Aligned_cols=232 Identities=10% Similarity=-0.023 Sum_probs=158.1
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcccc-chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-C-CH
Q 048766 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS-ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC-G-QV 318 (525)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 318 (525)
..+.+..++|++++++++..+ +-+...|+.--.++...+ .+++++.+++.+.... +-+..+++.-..++.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 344455678899988888753 334455555555566666 5888999998888776 55666676666666665 6 88
Q ss_pred HHHHHHHHhccC---CCHhHHHHHHHHHHhcCChh--------HHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCC--
Q 048766 319 EIADSMFRSLCR---KNLVTWNAMITGYARNGDLT--------KVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDI-- 384 (525)
Q Consensus 319 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~-- 384 (525)
+++.++++.+.. .|..+|+--.-.+.+.|.++ ++++.++++.+ ..| |...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~---~dp~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR---VDGRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHTTSTTCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccc
Confidence 899999999874 45667766665555555666 89999999998 445 66777777777766654
Q ss_pred ----CcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCCh--------------------HHHHHHHHHh-CC----
Q 048766 385 ----PFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEV--------------------WRAQRMIREL-GF---- 434 (525)
Q Consensus 385 ----~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~---- 434 (525)
.++++++.++++... .| |...|+.+-..+.+.|+. .+..++..++ +.
T Consensus 219 ~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred cchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 146788888887753 45 567777777777766654 3344444444 21
Q ss_pred ---CCchhHHHHHHHHHhcCCChHHHHHHHHHHH-hhcCCChhHHHHHHHH
Q 048766 435 ---GSYGVVWRALLSASGACSDLDVARISAAEVI-KLEGDSDYVYVMLCNL 481 (525)
Q Consensus 435 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~ 481 (525)
.+.+..+..++..|...|+.++|.++++.+. +.+|-....|...+..
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 2556778888899999999999999999987 5688666666554443
No 174
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.53 E-value=7.1e-07 Score=79.53 Aligned_cols=105 Identities=7% Similarity=-0.080 Sum_probs=69.0
Q ss_pred CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHH
Q 048766 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRAL 444 (525)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l 444 (525)
+...+..+...+...|+ +++|...|+++.+. .| +...+..++..|.+.|++++|+..+++. ...|+ ...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRK-YPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34555666666777777 77777777777643 33 5666667777777777777777777765 33333 4566666
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
+.++...|++++|+..|+++++++|+++..+.
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 110 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence 77777777777777777777777766544433
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.52 E-value=3.1e-07 Score=88.48 Aligned_cols=117 Identities=7% Similarity=-0.032 Sum_probs=96.3
Q ss_pred HHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCC
Q 048766 376 LAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACS 452 (525)
Q Consensus 376 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~ 452 (525)
...+...|+ +++|.+.++++.+. .| +...+..++.+|.+.|++++|++.+++. ...| +...+..++.++...|
T Consensus 13 g~~~~~~g~-~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 13 ANDYFKAKD-YENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSTTTTTC-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC-HHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 344667787 99999999988854 44 4778889999999999999999999987 3334 4678888999999999
Q ss_pred ChHHHHHHHHHHHhhcCCChhHHHHHHHH--HhhccChhHHHHHHH
Q 048766 453 DLDVARISAAEVIKLEGDSDYVYVMLCNL--YTSHGNWDVASVMRN 496 (525)
Q Consensus 453 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 496 (525)
++++|++.++++++..|+++.++..++.+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999888 889999999999987
No 176
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.51 E-value=6.7e-07 Score=68.76 Aligned_cols=38 Identities=11% Similarity=-0.133 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHH
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 478 (525)
++..++..+...|++++|++.|+++++..| ++.....+
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l 122 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHHH
Confidence 556677788889999999999999998888 56555443
No 177
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.50 E-value=5.3e-07 Score=82.66 Aligned_cols=115 Identities=11% Similarity=0.044 Sum_probs=95.9
Q ss_pred cchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----------------hhHHHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----------------GVVWRALLSA 447 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----------------~~~~~~l~~~ 447 (525)
+++|.+.++...+. .| +...+..++..|.+.|++++|+..|++. ...|+ ...|..+...
T Consensus 129 ~~~A~~~~~~a~~~---~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 129 FEKAKESWEMNSEE---KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EECCCCGGGCCHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhcCCHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 56666666554432 33 4567788888999999999999999886 22233 4788899999
Q ss_pred HhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 448 SGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 448 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+.+.|++++|+..++++++++|+++.++..++.+|...|++++|+..|+++.+..+
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 261 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999988755
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.47 E-value=1.1e-06 Score=70.68 Aligned_cols=129 Identities=15% Similarity=-0.061 Sum_probs=84.4
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHHHHHHh-------CCCC-chh
Q 048766 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQRMIREL-------GFGS-YGV 439 (525)
Q Consensus 372 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~ 439 (525)
+..+...+...|+ +++|.+.+++..+...-.++ ...+..++..|...|++++|...+++. +..+ ...
T Consensus 12 ~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 12 FGNLGNTHYLLGN-FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444455555 55555555554432110111 135566677777777777777777764 1111 134
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcC------CChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKLEG------DSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.+..++..+...|++++|++.++++++..+ .....+..++.++...|++++|...+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 566778888899999999999999987642 12456788999999999999999999987754
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.47 E-value=7.8e-07 Score=68.61 Aligned_cols=98 Identities=10% Similarity=-0.070 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC-------hhHHH
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS-------DYVYV 476 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~ 476 (525)
...+..++..+...|++++|...+++. ..+.+...+..++..+...|++++|+..++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 356777888888999999999999886 223456777888888888999999999999999988766 77888
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 477 MLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.++.++...|++++|...++++.+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999999999999999998888654
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.46 E-value=4.8e-07 Score=68.48 Aligned_cols=93 Identities=10% Similarity=0.030 Sum_probs=72.7
Q ss_pred CCCCcchHHHHHHHhhhhhCC-CC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHH
Q 048766 382 TDIPFDKVSEYFESMTKDYGI-KP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVA 457 (525)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A 457 (525)
.|+ +++|+..|++..+. +. .| +...+..++.+|.+.|++++|+..+++. ...| +...+..++.++...|++++|
T Consensus 3 ~g~-~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGL-EAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCc-HHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 466 88999999988743 10 23 4677888999999999999999999987 3233 467788899999999999999
Q ss_pred HHHHHHHHhhcCCChhHHH
Q 048766 458 RISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 458 ~~~~~~~~~~~p~~~~~~~ 476 (525)
+..++++++..|+++....
T Consensus 81 ~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 9999999999998887654
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.46 E-value=3e-06 Score=65.26 Aligned_cols=105 Identities=17% Similarity=0.004 Sum_probs=77.0
Q ss_pred HHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-h---hHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----hhHHHHH
Q 048766 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-V---EHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----GVVWRAL 444 (525)
Q Consensus 374 ~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l 444 (525)
.+...+...|+ +++|.+.|+.+.+. .|+ . ..+..++..|.+.|++++|+..++++ ...|+ ...+..+
T Consensus 7 ~~a~~~~~~~~-~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 7 NVAFDALKNGK-YDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHhCC-HHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 44455666777 78888888777654 232 2 46777788888888888888888876 22232 4567788
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
+..+...|++++|+..++++++..|+++.+......+-
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 88899999999999999999999998877766555443
No 182
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.45 E-value=1.3e-07 Score=70.82 Aligned_cols=93 Identities=11% Similarity=-0.058 Sum_probs=78.7
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC------hhHHH
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS------DYVYV 476 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 476 (525)
+...+..++..+.+.|++++|++.+++. .. +.+...+..++.++...|++++|+..++++++..|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4567788889999999999999999986 22 3357788889999999999999999999999999988 78888
Q ss_pred HHHHHHhhccChhHHHHHHHH
Q 048766 477 MLCNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~ 497 (525)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999988888766543
No 183
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.43 E-value=3.5e-06 Score=80.54 Aligned_cols=124 Identities=8% Similarity=0.020 Sum_probs=97.2
Q ss_pred HHcCCCCCcchHHHHHHHhhhhhC--CCC----ChhHHHHHHHHHhccCChHHHHHHHHHh---------CCCCc-hhHH
Q 048766 378 ACSHTDIPFDKVSEYFESMTKDYG--IKP----TVEHCCSMIRLMGQKGEVWRAQRMIREL---------GFGSY-GVVW 441 (525)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~ 441 (525)
.+...|+ +++|..++++..+... +.| ...+++.|+.+|...|++++|+.++++. +..|+ ..++
T Consensus 318 ~~~~qg~-~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 318 KARSEGL-YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHTTTC-HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHhCCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456777 8888888777655321 122 2457888899999999999999988875 33444 4568
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhh-----cCCChhH---HHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 442 RALLSASGACSDLDVARISAAEVIKL-----EGDSDYV---YVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
+.|+..|...|++++|+.++++++++ +|++|.+ ...+..++...|++++|..+|.++++.-
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999974 5888766 4578888999999999999999998854
No 184
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.42 E-value=1.7e-06 Score=64.46 Aligned_cols=101 Identities=10% Similarity=-0.078 Sum_probs=76.1
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC---chhHHHHH
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS---YGVVWRAL 444 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l 444 (525)
...+..+...+...|+ +++|...++++.+. .+.+...+..++..+...|++++|...+++. ...| +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGN-YTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCC-HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh-HHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4455666677777777 88888888877753 2335667777888888888888888888876 2233 46778888
Q ss_pred HHHHhcC-CChHHHHHHHHHHHhhcCCCh
Q 048766 445 LSASGAC-SDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 445 ~~~~~~~-~~~~~A~~~~~~~~~~~p~~~ 472 (525)
+..+... |++++|++.++++++..|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888899 999999999999999888654
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.41 E-value=1.7e-06 Score=80.29 Aligned_cols=137 Identities=6% Similarity=-0.048 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHH
Q 048766 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSM 412 (525)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 412 (525)
..+..+...+.+.|++++|++.|++..+ ..|+.. .... . +... ...| +...|..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~---~~~~~~----------~~~~-~-------~~~~---~~~~~~~~~~~nl 279 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLR---YVEGSR----------AAAE-D-------ADGA---KLQPVALSCVLNI 279 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHHH----------HHSC-H-------HHHG---GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhhcCc----------cccC-h-------HHHH---HHHHHHHHHHHHH
Confidence 3566777778888888888888887776 222110 0000 1 1111 1122 45678889
Q ss_pred HHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhH
Q 048766 413 IRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
+.+|.+.|++++|+..++++ ...| +...+..++.++...|++++|+..|+++++++|+++.++..+..++...++.++
T Consensus 280 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 280 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 5455 467888899999999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 048766 491 ASVM 494 (525)
Q Consensus 491 A~~~ 494 (525)
+.+.
T Consensus 360 a~k~ 363 (370)
T 1ihg_A 360 KEKA 363 (370)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8654
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.40 E-value=1.1e-06 Score=70.97 Aligned_cols=134 Identities=10% Similarity=-0.012 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHH
Q 048766 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMI 413 (525)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 413 (525)
..+......+.+.|++++|+..|.+... ..|... .... ..... +..+ -+.+...|..++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~---~~~~~~----------~~~~-~~~~~--~~~~-----~~~~~~~~~nla 70 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALT---RLDTLI----------LREK-PGEPE--WVEL-----DRKNIPLYANMS 70 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHHH----------HTSC-TTSHH--HHHH-----HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHhc----------ccCC-CCHHH--HHHH-----HHHHHHHHHHHH
Confidence 3566667777777777777777777766 211100 0011 11100 0111 122456788899
Q ss_pred HHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh-hHHHHHHHHHhhccCh
Q 048766 414 RLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD-YVYVMLCNLYTSHGNW 488 (525)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~ 488 (525)
.+|.+.|++++|+..+++. ...| +...|..++.++...|++++|+..|+++++++|+++ .+...+..+....++.
T Consensus 71 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 71 QCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986 3334 477888999999999999999999999999999888 5555665555444433
No 187
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.38 E-value=1.7e-06 Score=63.25 Aligned_cols=65 Identities=18% Similarity=-0.016 Sum_probs=51.0
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 437 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
+...+..++..+...|++++|+..|+++++.+|+++.+|..++.+|...|++++|+..+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45667777777788888888888888888888888888888888888888888888888777654
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.36 E-value=1.4e-05 Score=78.29 Aligned_cols=167 Identities=9% Similarity=-0.043 Sum_probs=128.8
Q ss_pred CHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCC----------hhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCC
Q 048766 317 QVEIADSMFRSLC---RKNLVTWNAMITGYARNGD----------LTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHT 382 (525)
Q Consensus 317 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 382 (525)
..++|.+.++.+. +.+..+|+.-...+...|+ ++++++.++++.+ ..| +..+|..-...+.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHc
Confidence 3456777777776 3455677776666666666 8899999999988 456 567787777777777
Q ss_pred C--CCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccC-ChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcC-----
Q 048766 383 D--IPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKG-EVWRAQRMIREL-GFGS-YGVVWRALLSASGAC----- 451 (525)
Q Consensus 383 ~--~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~----- 451 (525)
+ + ++++++.++++.+. +| +...|+.-..++.+.| .++++++.++++ ...| +..+|......+.+.
T Consensus 121 ~~~~-~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 121 PEPN-WARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp SSCC-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccc-HHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 7 4 68999999999864 44 5677877777888888 888999998887 4444 466677666555442
Q ss_pred ---------CChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhH
Q 048766 452 ---------SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 452 ---------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
+.++++++.+.++++.+|++..+|..+.+++.+.|+.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999988665
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.36 E-value=2.2e-06 Score=64.54 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=37.7
Q ss_pred hHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 388 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
.|++.+++..+. -+.+...+..++..|...|++++|+..+++. ...| +...|..++..+...|++++|+..+++++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555554421 1123444555555555555555555555543 1112 23344445555555555555555555555
Q ss_pred hhcC
Q 048766 466 KLEG 469 (525)
Q Consensus 466 ~~~p 469 (525)
+..|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 5444
No 190
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.35 E-value=3e-06 Score=60.46 Aligned_cols=81 Identities=16% Similarity=0.099 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
...+..++..+...|++++|+..+++. .. +.+...+..++..+...|++++|+..++++++.+|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777788888888888888888876 22 2346677788888888888899999888888888888888888888877
Q ss_pred hcc
Q 048766 484 SHG 486 (525)
Q Consensus 484 ~~g 486 (525)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 191
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.35 E-value=1.2e-06 Score=66.62 Aligned_cols=97 Identities=11% Similarity=-0.025 Sum_probs=69.4
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHH
Q 048766 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSAS 448 (525)
Q Consensus 372 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 448 (525)
+..+...+...|+ +++|...++++.+. .| +...|..++.++...|++++|+..+++. ...| +...+..++..+
T Consensus 20 ~~~~g~~~~~~g~-~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLAN-LAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4455566677777 88888888887753 44 5677778888888888888888888876 3334 456777888888
Q ss_pred hcCCChHHHHHHHHHHHhhcCCCh
Q 048766 449 GACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 449 ~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
...|++++|+..++++++.+|+++
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCC
Confidence 888999999999999998888654
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.33 E-value=5.9e-07 Score=70.42 Aligned_cols=120 Identities=8% Similarity=-0.054 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 414 (525)
.+......+.+.|++++|+..|++..+ +.|+...- . - .+. .+.+...|..+..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~--------~--a-~~~-------------~~~~a~a~~n~g~ 65 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME---ISHTMPPE--------E--A-FDH-------------AGFDAFCHAGLAE 65 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HHTTSCTT--------S--C-CCH-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCCcch--------h--h-hhh-------------ccchHHHHHHHHH
Confidence 345556666777777777777777777 55542100 0 0 000 0012336777777
Q ss_pred HHhccCChHHHHHHHHHh-CC-------CCc-hhHH----HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 048766 415 LMGQKGEVWRAQRMIREL-GF-------GSY-GVVW----RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNL 481 (525)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~-~~-------~~~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 481 (525)
++.+.|++++|+..+++. .. .|+ ...| ...+.++...|++++|+..|++++++.|++...+..+..+
T Consensus 66 al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 66 ALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 888888888888877765 33 665 5678 8899999999999999999999999999887766544433
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.31 E-value=3.8e-06 Score=67.45 Aligned_cols=134 Identities=15% Similarity=0.059 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC----HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----h
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD----SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----V 406 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 406 (525)
++..+...+...|++++|+..+++..+.....++ ..++..+...+...|+ +++|.+.+++..+...-.++ .
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE-FETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3445555556666666666666655442100011 1345556666666676 77777777665543111111 3
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh-------CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL-------GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
..+..++..+...|++++|...+++. +..+ ....+..+...+...|++++|.+.++++++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888765 1111 134566778888889999999999999988654
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.30 E-value=7.5e-07 Score=69.64 Aligned_cols=87 Identities=13% Similarity=-0.006 Sum_probs=61.6
Q ss_pred ccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCC----------hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 418 QKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSD----------LDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
+.+.+++|++.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344556666666654 2222 34555555555555444 56899999999999999999999999999877
Q ss_pred c-----------ChhHHHHHHHHHHHcCCc
Q 048766 486 G-----------NWDVASVMRNFMRERGLR 504 (525)
Q Consensus 486 g-----------~~~~A~~~~~~~~~~~~~ 504 (525)
| ++++|++.|++..+..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 4 899999999988877653
No 195
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=9.1e-06 Score=77.54 Aligned_cols=161 Identities=7% Similarity=-0.060 Sum_probs=120.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCCH---------------hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC
Q 048766 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDS---------------VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404 (525)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---------------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 404 (525)
...+.+.|++++|++.|.++.+......+. ..+..+...|...|+ +++|.+++..+.+..+..+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~-~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA-KDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHcc
Confidence 345677889999999998888743111111 236778889999999 9999999998876433333
Q ss_pred Ch----hHHHHHHHHHhccCChHHHHHHHHHh-------CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhc----
Q 048766 405 TV----EHCCSMIRLMGQKGEVWRAQRMIREL-------GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLE---- 468 (525)
Q Consensus 405 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---- 468 (525)
+. .+.+.+...+...|++++|..++++. +..+ ...++..++..+...|++++|...++++...-
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 32 23444556667789999999998875 2222 25577888999999999999999999998752
Q ss_pred --CCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 469 --GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 469 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
|....++..++.+|...|++++|..++++....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 333567889999999999999999999988653
No 196
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.29 E-value=4.7e-06 Score=59.42 Aligned_cols=73 Identities=8% Similarity=-0.049 Sum_probs=62.6
Q ss_pred CCchhHHHHHHHHHhcCCC---hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCccCCc
Q 048766 435 GSYGVVWRALLSASGACSD---LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAG 508 (525)
Q Consensus 435 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 508 (525)
++++..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+.+|+++.+..+. .|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 4556777777777754444 799999999999999999999999999999999999999999999998776 443
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.27 E-value=2.1e-06 Score=78.69 Aligned_cols=115 Identities=8% Similarity=-0.098 Sum_probs=79.6
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhc
Q 048766 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450 (525)
Q Consensus 371 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (525)
.+..+...+...|+ +++|...|++.... .|+.. .+...|+..++...+. ...|..+..++.+
T Consensus 181 ~~~~~g~~~~~~g~-~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~ 242 (338)
T 2if4_A 181 RRKMDGNSLFKEEK-LEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHTCSSSC-CHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34444455555555 66666666555432 23221 1122333333332221 1377888999999
Q ss_pred CCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 451 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.|++++|+..++++++.+|+++.++..++.+|...|++++|+..|++..+..+
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999998876544
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.26 E-value=3.5e-06 Score=80.76 Aligned_cols=115 Identities=12% Similarity=0.001 Sum_probs=91.7
Q ss_pred cchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----------------hhHHHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----------------GVVWRALLSA 447 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----------------~~~~~~l~~~ 447 (525)
+++|.+.|+...+. .| ....+..++..|.+.|++++|+..|+++ ...|+ ...|..+..+
T Consensus 250 ~~~A~~~~~~~~~~---~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 250 FEKAKESWEMDTKE---KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EECCCCGGGSCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHH---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444322 22 3456777788888888888888888876 21222 4778889999
Q ss_pred HhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 448 SGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 448 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+.+.|++++|+..++++++++|+++.++..++.+|...|++++|+..|+++.+..+
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999988654
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.25 E-value=4.4e-06 Score=77.40 Aligned_cols=96 Identities=9% Similarity=-0.075 Sum_probs=81.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh-C----------------CCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL-G----------------FGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~-~----------------~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
.+..++..+.+.|++++|+..++++ . ..|. ...|..+...+.+.|++++|+..++++++.+|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 3556677777777777777777765 2 2232 56788889999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+++.++..++.+|...|++++|+..|++..+..+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999988754
No 200
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.18 E-value=2.1e-06 Score=82.70 Aligned_cols=96 Identities=9% Similarity=-0.081 Sum_probs=84.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
+..++..+.+.|++++|++.++++ ...| +...+..++.++.+.|++++|++.++++++++|+++.++..++.+|...|
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 344556778899999999999987 3334 47888999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCc
Q 048766 487 NWDVASVMRNFMRERGLR 504 (525)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~ 504 (525)
++++|++.+++..+..+.
T Consensus 89 ~~~eA~~~~~~al~~~p~ 106 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPH 106 (477)
T ss_dssp CHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 999999999999887553
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.16 E-value=9.7e-06 Score=60.28 Aligned_cols=69 Identities=10% Similarity=-0.157 Sum_probs=63.4
Q ss_pred CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 436 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
++...+..++..+...|++++|++.++++++..|+++.++..++.++...|++++|+..+++..+..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 356678888999999999999999999999999999999999999999999999999999999887554
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.16 E-value=2.7e-05 Score=60.64 Aligned_cols=110 Identities=13% Similarity=-0.031 Sum_probs=67.9
Q ss_pred cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhc----CCChHHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA----CSDLDVARISA 461 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~ 461 (525)
+++|.++|++..+. + .|.. . |...|...+.+++|.+.|++.-...++.....+...|.. .+|+++|++.|
T Consensus 11 ~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 11 LKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 45555566555543 2 2222 1 555555555555666666655222345555556665655 66777777777
Q ss_pred HHHHhhcCCChhHHHHHHHHHhh----ccChhHHHHHHHHHHHcCC
Q 048766 462 AEVIKLEGDSDYVYVMLCNLYTS----HGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 462 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 503 (525)
+++.+.+ ++.++..|+.+|.. .+++++|..++++..+.|.
T Consensus 85 ~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 85 SKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777663 67777777777777 7777777777777777664
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.11 E-value=2.3e-05 Score=58.78 Aligned_cols=80 Identities=9% Similarity=0.028 Sum_probs=67.4
Q ss_pred HHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 424 RAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 424 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
+|+..+++. ...| +...+..++..+...|++++|+..++++++.+|+++.++..++.+|...|++++|...|++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466667765 3344 46778888999999999999999999999999999999999999999999999999999988765
Q ss_pred CC
Q 048766 502 GL 503 (525)
Q Consensus 502 ~~ 503 (525)
..
T Consensus 83 ~~ 84 (115)
T 2kat_A 83 AQ 84 (115)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.06 E-value=2.1e-05 Score=55.92 Aligned_cols=67 Identities=21% Similarity=0.168 Sum_probs=61.8
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 437 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+...+..+...+...|++++|+..++++++..|+++.++..++.++...|++++|...+++..+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3567788888999999999999999999999999999999999999999999999999999988754
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.99 E-value=3.7e-05 Score=73.56 Aligned_cols=87 Identities=10% Similarity=-0.031 Sum_probs=72.8
Q ss_pred HHHhccCChHHHHHHHHHh---------CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhh-----cCCChhH---H
Q 048766 414 RLMGQKGEVWRAQRMIREL---------GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKL-----EGDSDYV---Y 475 (525)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~---~ 475 (525)
..+...|++++|+.++++. +..|+ ..+++.++.+|...|++++|+.+++++++. +|++|.+ +
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466889999999999875 23344 457888999999999999999999999974 4777654 7
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHH
Q 048766 476 VMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
..|+.+|..+|++++|..++++..+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999999998865
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.96 E-value=0.00011 Score=57.19 Aligned_cols=119 Identities=12% Similarity=0.016 Sum_probs=93.6
Q ss_pred CChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhc----cCCh
Q 048766 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ----KGEV 422 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 422 (525)
+++++|+++|++..+.| .|+.. +...|...+. +++|.++|++..+. -++..+..|...|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~-~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC----LSLVSNSQIN-KQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSC-HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCC-HHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccH
Confidence 47889999999999876 44444 5555555555 89999999998764 467788889999988 8999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhc----CCChHHHHHHHHHHHhhcCCChhHHHHH
Q 048766 423 WRAQRMIRELGFGSYGVVWRALLSASGA----CSDLDVARISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 423 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l 478 (525)
++|.+.|++.-...++.....+...|.. .+++++|+..|+++.+.+. +.+...|
T Consensus 78 ~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~l 135 (138)
T 1klx_A 78 RKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS--EDACGIL 135 (138)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHH
Confidence 9999999998334567778888888887 8999999999999999863 4444433
No 207
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.96 E-value=3.9e-07 Score=83.15 Aligned_cols=262 Identities=12% Similarity=0.152 Sum_probs=179.7
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHH
Q 048766 68 SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLID 147 (525)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 147 (525)
.+..|..|..+....+...+|++.|-+. -|+..|..++.++.+.|.+++-...+...++. ..++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 4557889999999999988888766322 26678899999999999999999888877665 345566778999
Q ss_pred HHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcC
Q 048766 148 MYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227 (525)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 227 (525)
+|++.++..+.++++ ..|+..-...+..-|...|.++.|.-+|..+.+ |..|...+.+.|+++.|.+.-++.
T Consensus 125 ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999877655443 336777777888889999999999888888743 223444455667766666544443
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHH
Q 048766 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307 (525)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 307 (525)
.++.+|-.+-.+|...+++.-|.-.--.++-. || -...++.-|...|.+++-+.+++...... .....+|+-
T Consensus 197 --ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTE 268 (624)
T 3lvg_A 197 --NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 268 (624)
T ss_dssp --CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHH
T ss_pred --CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHH
Confidence 56678888888888888877665544333321 11 12234556777777777777777665322 456777777
Q ss_pred HHHHHHcCCCHHHHHHHHHhccC-----------CCHhHHHHHHHHHHhcCChhHHHH
Q 048766 308 LLDMYSKCGQVEIADSMFRSLCR-----------KNLVTWNAMITGYARNGDLTKVIE 354 (525)
Q Consensus 308 l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~ 354 (525)
|.-.|++- ++++..+.++..-. .....|.-++-.|.+-.+++.|..
T Consensus 269 LaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 269 LAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 77777765 45555555544321 133467778888888778876654
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.92 E-value=4.7e-05 Score=71.57 Aligned_cols=83 Identities=13% Similarity=-0.043 Sum_probs=67.7
Q ss_pred ccCChHHHHHHHHHh---------CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhh-----cCCChhH---HHHHH
Q 048766 418 QKGEVWRAQRMIREL---------GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKL-----EGDSDYV---YVMLC 479 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~---~~~l~ 479 (525)
..|++++|+.++++. +..|+ ..+++.++.+|...|++++|+.+++++++. +|++|.+ ++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457788888887764 23344 357888999999999999999999999974 4666654 88999
Q ss_pred HHHhhccChhHHHHHHHHHHH
Q 048766 480 NLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.+|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998865
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.92 E-value=1.5e-05 Score=57.88 Aligned_cols=81 Identities=15% Similarity=-0.003 Sum_probs=61.9
Q ss_pred HHHHHHhccCChHHHHHHHHHh-CCCC-chh-HHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccC
Q 048766 411 SMIRLMGQKGEVWRAQRMIREL-GFGS-YGV-VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 487 (525)
..+..+.+.|++++|+..++++ ...| +.. .+..++..+...|++++|+..|+++++.+|+++.++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 3466778889999999999886 3334 456 78888888899999999999999999999988877633 55
Q ss_pred hhHHHHHHHHHH
Q 048766 488 WDVASVMRNFMR 499 (525)
Q Consensus 488 ~~~A~~~~~~~~ 499 (525)
+.++...+++..
T Consensus 77 ~~~a~~~~~~~~ 88 (99)
T 2kc7_A 77 VMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHHHHHh
Confidence 666666665443
No 210
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.92 E-value=0.0002 Score=70.27 Aligned_cols=154 Identities=9% Similarity=-0.063 Sum_probs=120.8
Q ss_pred cCChhHHHHHHHHHhhCCCCCCCH-hHHHHHHHHHcCCCCC---------cchHHHHHHHhhhhhCCCCChhHHHHHHHH
Q 048766 346 NGDLTKVIELFEQLKTVRDLQPDS-VTFLNVLAACSHTDIP---------FDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415 (525)
Q Consensus 346 ~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 415 (525)
....++|++.++++.+ ..|+. ..|+.--..+...+++ ++++++.++.+.+. -+-+...|..-..+
T Consensus 42 ~~~~eeal~~~~~~l~---~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3445788999999999 67864 4444433333333332 68899999999864 23367788888888
Q ss_pred HhccC--ChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCC-ChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc-----
Q 048766 416 MGQKG--EVWRAQRMIREL--GFGSYGVVWRALLSASGACS-DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH----- 485 (525)
Q Consensus 416 ~~~~g--~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 485 (525)
+.+.| +++++++.++++ ..+.+..+|..-...+.+.| .++++++.++++++.+|.|..+|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88999 679999999998 33456788888888888888 899999999999999999999999999998774
Q ss_pred ---------cChhHHHHHHHHHHHcCCc
Q 048766 486 ---------GNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 486 ---------g~~~~A~~~~~~~~~~~~~ 504 (525)
+.++++++++++.....+.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCC
Confidence 6789999999988876543
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.91 E-value=1.4e-05 Score=62.47 Aligned_cols=106 Identities=11% Similarity=0.051 Sum_probs=64.1
Q ss_pred cchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCC----------hHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcC-
Q 048766 386 FDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGE----------VWRAQRMIREL-GFGSY-GVVWRALLSASGAC- 451 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~- 451 (525)
+++|++.++...+. .| ++..|..+..++...|+ +++|+..|++. ...|+ ...|..++.+|...
T Consensus 18 feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 18 FEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 55555555555532 33 45555555555555544 34777777765 33443 55677777777655
Q ss_pred ----------CChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 452 ----------SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 452 ----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
|++++|+++|+++++++|++......+- ..++|-+++-.+...
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHHHHHHHHHS
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHhccCccccc
Confidence 5899999999999999997653332221 234455555544444
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.80 E-value=7.2e-05 Score=54.15 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=57.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcCCChh-HHHHHHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 443 ALLSASGACSDLDVARISAAEVIKLEGDSDY-VYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 443 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
..+..+...|++++|+..++++++.+|+++. ++..++.+|...|++++|+..|++..+..+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3456677889999999999999999999999 99999999999999999999999999876543
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.80 E-value=0.00013 Score=53.00 Aligned_cols=82 Identities=13% Similarity=-0.014 Sum_probs=63.0
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC--ChhHHHHHH
Q 048766 404 PTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGD--SDYVYVMLC 479 (525)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~ 479 (525)
.++..+..++..|.+.|++++|+..|+++ ...| +...|..++.++...|++++|++.+++++++.|. +......+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 35778888999999999999999999987 3333 4668888999999999999999999999998753 334444444
Q ss_pred HHHhhc
Q 048766 480 NLYTSH 485 (525)
Q Consensus 480 ~~~~~~ 485 (525)
..+...
T Consensus 85 ~~l~~~ 90 (100)
T 3ma5_A 85 DAKLKA 90 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 444443
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.78 E-value=0.00016 Score=62.31 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=70.6
Q ss_pred hHHHHHHHHHh-CCCCc---hhHHHHHHHHHhc-----CCChHHHHHHHHHHHhhcCCC-hhHHHHHHHHHhh-ccChhH
Q 048766 422 VWRAQRMIREL-GFGSY---GVVWRALLSASGA-----CSDLDVARISAAEVIKLEGDS-DYVYVMLCNLYTS-HGNWDV 490 (525)
Q Consensus 422 ~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~-~g~~~~ 490 (525)
..+|...+++. ...|+ ...|..++..|.. -|+.++|.++|+++++++|+. ..++..+++.+.+ .|+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45666666665 44555 5677788888877 489999999999999999964 9999999999888 499999
Q ss_pred HHHHHHHHHHcCCccCCcc
Q 048766 491 ASVMRNFMRERGLRKEAGC 509 (525)
Q Consensus 491 A~~~~~~~~~~~~~~~~~~ 509 (525)
|.+++++.++..+...|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999999888755653
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.78 E-value=0.00016 Score=68.01 Aligned_cols=88 Identities=13% Similarity=0.052 Sum_probs=71.0
Q ss_pred HHHHhccCChHHHHHHHHHh---------CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhh-----cCCChhH---
Q 048766 413 IRLMGQKGEVWRAQRMIREL---------GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKL-----EGDSDYV--- 474 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~--- 474 (525)
+..+.+.|++++|+.++++. +..|+ ..+++.++.+|...|++++|+.+++++++. +|++|.+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566788999999998875 12222 356788899999999999999999999974 4666654
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 475 YVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
+..|+.+|..+|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 78999999999999999999998865
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.76 E-value=0.001 Score=59.91 Aligned_cols=140 Identities=8% Similarity=-0.062 Sum_probs=76.7
Q ss_pred cCCCHhHHHHHHHHHH--hcC---ChhHHHHHHHHHhhCCCCCCCH-hHHHHHHHHHc----CCCCCcchH---HHHHHH
Q 048766 329 CRKNLVTWNAMITGYA--RNG---DLTKVIELFEQLKTVRDLQPDS-VTFLNVLAACS----HTDIPFDKV---SEYFES 395 (525)
Q Consensus 329 ~~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~----~~~~~~~~a---~~~~~~ 395 (525)
.+.+...|...+++.. ..+ +..+|+.+|++..+ ..|+. ..+..+..++. ..+...... ...++.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3456777777775543 333 35789999999999 78873 44443333332 011000111 111111
Q ss_pred hhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 396 MTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
.......+.++..|..+...+...|++++|...++++ ..+|+...|..+...+.-.|++++|.+.+++++.++|..
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 1111022345556666655555567777777777665 333555555556666666777777777777777777733
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.62 E-value=0.00067 Score=49.49 Aligned_cols=76 Identities=16% Similarity=0.119 Sum_probs=62.4
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHh-----C----CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhH
Q 048766 404 PTVEHCCSMIRLMGQKGEVWRAQRMIREL-----G----FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474 (525)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 474 (525)
.+...+..++..+.+.|++..|...++.+ + ..+...++..++.++.+.|+++.|+..+++++++.|+++.+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 35556778888899999999999998875 1 12346778899999999999999999999999999999888
Q ss_pred HHHHH
Q 048766 475 YVMLC 479 (525)
Q Consensus 475 ~~~l~ 479 (525)
...+.
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 66654
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.59 E-value=0.00039 Score=53.69 Aligned_cols=89 Identities=11% Similarity=0.046 Sum_probs=69.2
Q ss_pred cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccC---ChHHHHHHHHHh-CCC-C--chhHHHHHHHHHhcCCChHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG---EVWRAQRMIREL-GFG-S--YGVVWRALLSASGACSDLDVAR 458 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~~~~~~A~ 458 (525)
...+.+-|.+.... + .++..+...+..++.+.+ +.++++.++++. ... | ....+..+..++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 44555566655442 2 478888888999999988 666899999887 323 5 3567788899999999999999
Q ss_pred HHHHHHHhhcCCChhHHH
Q 048766 459 ISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 459 ~~~~~~~~~~p~~~~~~~ 476 (525)
+.++++++.+|+|..+..
T Consensus 92 ~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCCCCHHHHH
Confidence 999999999998776654
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.58 E-value=0.00054 Score=64.36 Aligned_cols=94 Identities=9% Similarity=0.031 Sum_probs=69.4
Q ss_pred CCCCcchHHHHHHHhhhhh--CCCCC----hhHHHHHHHHHhccCChHHHHHHHHHh---------CCCCc-hhHHHHHH
Q 048766 382 TDIPFDKVSEYFESMTKDY--GIKPT----VEHCCSMIRLMGQKGEVWRAQRMIREL---------GFGSY-GVVWRALL 445 (525)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~ 445 (525)
.|+ +++|..++++..+.. -+.|+ ..+++.|+.+|...|++++|+.++++. +..|+ ..+++.|+
T Consensus 311 ~g~-~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKS-PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TSC-HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred ccC-HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 455 777777777665431 12222 456778888888888888888888775 34455 45688899
Q ss_pred HHHhcCCChHHHHHHHHHHHhh-----cCCChhHHH
Q 048766 446 SASGACSDLDVARISAAEVIKL-----EGDSDYVYV 476 (525)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~ 476 (525)
..|...|++++|+.++++++++ +|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 9999999999999999999984 588887654
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.50 E-value=0.00093 Score=62.87 Aligned_cols=98 Identities=7% Similarity=-0.070 Sum_probs=69.8
Q ss_pred HcCCCCCcchHHHHHHHhhhhh--CCCC----ChhHHHHHHHHHhccCChHHHHHHHHHh---------CCCCc-hhHHH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDY--GIKP----TVEHCCSMIRLMGQKGEVWRAQRMIREL---------GFGSY-GVVWR 442 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~ 442 (525)
+...|+ +++|..++++..+.. -+.| ...+++.++.+|...|++++|+.+++++ +..|+ ..++.
T Consensus 297 ~~~~g~-~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 297 LKAHWK-WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHTTC-HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHhhcc-HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 334555 777777776665321 1122 2456777888888888888888888765 33444 45678
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhh-----cCCChhHHHH
Q 048766 443 ALLSASGACSDLDVARISAAEVIKL-----EGDSDYVYVM 477 (525)
Q Consensus 443 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~ 477 (525)
.++..|...|++++|+.++++++++ +|++|.+-..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 8999999999999999999999974 6888877554
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.49 E-value=0.00052 Score=53.00 Aligned_cols=83 Identities=5% Similarity=-0.104 Sum_probs=68.5
Q ss_pred hHHHHHHHHHh--CCCCchhHHHHHHHHHhcCC---ChHHHHHHHHHHHhhc-C-CChhHHHHHHHHHhhccChhHHHHH
Q 048766 422 VWRAQRMIREL--GFGSYGVVWRALLSASGACS---DLDVARISAAEVIKLE-G-DSDYVYVMLCNLYTSHGNWDVASVM 494 (525)
Q Consensus 422 ~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (525)
...+.+.|.+. ...++..+...+.+++.+++ +.++++.+++++++.+ | ++...+..|+.+|.+.|++++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34455555544 33577888888999999988 7779999999999998 7 5688999999999999999999999
Q ss_pred HHHHHHcCCc
Q 048766 495 RNFMRERGLR 504 (525)
Q Consensus 495 ~~~~~~~~~~ 504 (525)
++.+.+..+.
T Consensus 94 ~~~lL~ieP~ 103 (152)
T 1pc2_A 94 VRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHhcCCC
Confidence 9999886553
No 222
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.44 E-value=4.4e-07 Score=82.82 Aligned_cols=223 Identities=10% Similarity=0.064 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcc
Q 048766 37 NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116 (525)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 116 (525)
.+.+|..|..+....+++.+|++.|-+. .|+..|..++.+..+.|.++.-+..+.-.++.. -++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHh
Confidence 3557888899988888888887765443 566788999999999999999999998776643 344445678999999
Q ss_pred cCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcC
Q 048766 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196 (525)
Q Consensus 117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 196 (525)
.++..+.++.+. .|+..-...+.+-|...|.++.|.-+|..+.. |..|..++.+.|++..|.+.-++.
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999876655443 47777778888999999999998888876633 333334455555555554433332
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 048766 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276 (525)
Q Consensus 197 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 276 (525)
.++.||..+..+|...+.+.-|.-.--.+. ....-...++..|-..|.+++.+.+++.-... -+.....|+-|.-.
T Consensus 197 --ns~ktWKeV~~ACvd~~EfrLAqicGLniI-vhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaIL 272 (624)
T 3lvg_A 197 --NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAIL 272 (624)
T ss_dssp --CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHH
T ss_pred --CChhHHHHHHHHHhCchHHHHHHHhcchhc-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHH
Confidence 344566666666666665554432211111 00111223344556666666666666665532 23445555555555
Q ss_pred hcc
Q 048766 277 IAG 279 (525)
Q Consensus 277 ~~~ 279 (525)
|++
T Consensus 273 YsK 275 (624)
T 3lvg_A 273 YSK 275 (624)
T ss_dssp HHS
T ss_pred HHh
Confidence 544
No 223
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.43 E-value=0.11 Score=51.07 Aligned_cols=116 Identities=9% Similarity=-0.014 Sum_probs=70.9
Q ss_pred CChhHHHHHHHHHhhCCCCCCCH--hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHH
Q 048766 347 GDLTKVIELFEQLKTVRDLQPDS--VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 424 (525)
.+.+.|...+..........+.. .....+.......+. ..++...+...... ..+.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDV-TDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTC-CHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37788888888876543232222 222333334455553 45666666664432 3343334444555567789999
Q ss_pred HHHHHHHhCCCC-c-hhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 425 AQRMIRELGFGS-Y-GVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 425 A~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
|...|+.++..+ + .....-+..++...|+.++|..+|+++..
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999998885433 2 33334466677788999999998888865
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.29 E-value=0.0022 Score=57.74 Aligned_cols=137 Identities=15% Similarity=0.058 Sum_probs=93.6
Q ss_pred CCCCHhHHHHHHHHHcC--CCC--CcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHh----ccCC----hH---HHHHH
Q 048766 365 LQPDSVTFLNVLAACSH--TDI--PFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMG----QKGE----VW---RAQRM 428 (525)
Q Consensus 365 ~~p~~~~~~~l~~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~----~~g~----~~---~A~~~ 428 (525)
.+.+...|...+.+... .+. ...+|+.+|+++.+. .|+ ...|..+..+|. ..+. .. .+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 34466677776665432 221 268999999999854 776 344444444442 1111 11 12221
Q ss_pred HHHh-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 429 IREL-GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 429 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
...+ ..+.++..+..+...+...|++++|+..++++++++| +...|..++.++.-.|++++|.+.+++....++..
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 1112 2244567777777777778999999999999999998 67888999999999999999999999998887644
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.19 E-value=0.0058 Score=45.31 Aligned_cols=90 Identities=11% Similarity=-0.008 Sum_probs=66.2
Q ss_pred cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHH---HHHHHHHh-CCC-C--chhHHHHHHHHHhcCCChHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR---AQRMIREL-GFG-S--YGVVWRALLSASGACSDLDVAR 458 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~~~~~~A~ 458 (525)
...+.+-|...... + .++..+-..++.++.+..+..+ ++.+++++ ... | .......+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445555544432 3 3777777788888888877666 88888877 323 4 2456677888999999999999
Q ss_pred HHHHHHHhhcCCChhHHHH
Q 048766 459 ISAAEVIKLEGDSDYVYVM 477 (525)
Q Consensus 459 ~~~~~~~~~~p~~~~~~~~ 477 (525)
+.++.+++.+|+|..+...
T Consensus 95 ~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 9999999999998877653
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.12 E-value=0.038 Score=57.15 Aligned_cols=152 Identities=13% Similarity=0.127 Sum_probs=90.7
Q ss_pred HHHhcCCHHHHHH-HHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhc
Q 048766 148 MYGKCGSVEDAIG-VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226 (525)
Q Consensus 148 ~~~~~g~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 226 (525)
.....+++++|.+ ++..+. +......++..+.+.|.++.|+++.+.. ..-.......|+++.|.++.+.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~ 677 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTD 677 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHh
Confidence 3445677887777 553332 0122266666777778878777666421 1123445677888888888777
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHH
Q 048766 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306 (525)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 306 (525)
+ .+...|..+...+.+.++++.|.+.|..+.+ |..+...+...++.+....+.+.....|. ++
T Consensus 678 ~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~ 740 (814)
T 3mkq_A 678 E--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FN 740 (814)
T ss_dssp C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HH
T ss_pred h--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hH
Confidence 6 4556788888888888888888888887653 33444444445555555544444444331 12
Q ss_pred HHHHHHHcCCCHHHHHHHHH
Q 048766 307 ALLDMYSKCGQVEIADSMFR 326 (525)
Q Consensus 307 ~l~~~~~~~g~~~~A~~~~~ 326 (525)
....+|.+.|++++|.+++.
T Consensus 741 ~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 741 LAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 22334445566666655443
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.00 E-value=0.055 Score=40.16 Aligned_cols=141 Identities=8% Similarity=-0.004 Sum_probs=97.8
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCCh
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 422 (525)
+.-.|..++..++..+.... .+..-++.++--....-+ -+-..+.++.+-+- .|. ..+|+.
T Consensus 17 ~ildG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~-C~y~v~vLd~IGki----FDi----------s~C~Nl 77 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESID-CRYMFQVLDKIGSY----FDL----------DKCQNL 77 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCC-HHHHHHHHHHHGGG----SCG----------GGCSCT
T ss_pred HHHhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhc-hhHHHHHHHHHhhh----cCc----------HhhhcH
Confidence 34467788888888877662 344556666555555444 55666666665432 221 235666
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 423 WRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 423 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
......+-.++ .+.......+..+..+|..|+-.+++..++...|.+|.....++.+|.+.|+..+|.+++.+.-++|
T Consensus 78 KrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 78 KSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 66666665553 3445556667778888999999999998777666689999999999999999999999999999988
Q ss_pred Cc
Q 048766 503 LR 504 (525)
Q Consensus 503 ~~ 504 (525)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 75
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.96 E-value=0.0057 Score=43.21 Aligned_cols=68 Identities=3% Similarity=-0.106 Sum_probs=52.3
Q ss_pred CCChhHHHHHHHHHhccCC---hHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 403 KPTVEHCCSMIRLMGQKGE---VWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
+.++..+..++.++...++ .++|..++++. ...| +...+..++..+.+.|++++|+..++++++.+|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3466777777777765444 68888888886 3334 4667777888888999999999999999999886
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.95 E-value=0.0042 Score=45.11 Aligned_cols=67 Identities=13% Similarity=-0.014 Sum_probs=57.1
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHHHHHHhhc-------CCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 437 YGVVWRALLSASGACSDLDVARISAAEVIKLE-------GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 437 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+..-...++..+...|+++.|...++++++.. +..+.++..|+.++.+.|++++|..+++++.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34455678889999999999999999999863 34567899999999999999999999999987654
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.64 E-value=0.039 Score=57.13 Aligned_cols=152 Identities=11% Similarity=0.035 Sum_probs=79.8
Q ss_pred HhccCchhhhhH-HHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHH
Q 048766 13 SSDLGWDTYCQQ-LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNL 91 (525)
Q Consensus 13 ~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 91 (525)
....+++++|.+ ++.. ++ +......++..+.+.|.++.|+++.+.- ..-.......|+++.|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHH
Confidence 345677777766 4411 11 0112256667777777777777665321 1112334556777777776
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChh
Q 048766 92 FVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII 171 (525)
Q Consensus 92 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 171 (525)
.+.+ .+...|..+...+.+.++++.|.+.|..+.. +..+...+...|+.+...++.+.....+
T Consensus 675 ~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~-- 737 (814)
T 3mkq_A 675 LTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG-- 737 (814)
T ss_dssp HTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT--
T ss_pred HHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 5432 3556777777777777777777777776532 2234444444555554444333322211
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhc
Q 048766 172 SWNSVIAASARNGNLELAFGFLHR 195 (525)
Q Consensus 172 ~~~~l~~~~~~~~~~~~a~~~~~~ 195 (525)
.++.-..+|.+.|++++|++++.+
T Consensus 738 ~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCHHHHHHHHHH
Confidence 112222334445555555444433
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.46 E-value=0.0066 Score=52.34 Aligned_cols=106 Identities=8% Similarity=0.014 Sum_probs=68.0
Q ss_pred cchHHHHHHHhhhhhCCCCC---hhHHHHHHHHHhc-----cCChHHHHHHHHHh-CCCCc--hhHHHHHHHHHhc-CCC
Q 048766 386 FDKVSEYFESMTKDYGIKPT---VEHCCSMIRLMGQ-----KGEVWRAQRMIREL-GFGSY--GVVWRALLSASGA-CSD 453 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~~~--~~~~~~l~~~~~~-~~~ 453 (525)
...|...+++.. .+.|+ ...|..++..|.+ -|+.++|.+.|++. .+.|+ ..++..+...++. .|+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 345555566555 34665 4467777777777 48888888888876 44452 5566667777776 488
Q ss_pred hHHHHHHHHHHHhhcCCC-hhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 454 LDVARISAAEVIKLEGDS-DYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.++|.+.+++++...|.. |. . .+...+.-.+|..+++++.+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~--~----~lan~~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH--N----KLLVILSQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS--C----HHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC--h----hHHHHHHHHHHHHHHHHhHH
Confidence 999999999998877642 32 1 22333344566666665543
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.46 E-value=0.027 Score=42.82 Aligned_cols=105 Identities=9% Similarity=0.042 Sum_probs=51.2
Q ss_pred CHhHHHHHHHHHcCCCCCc------chHHHHHHHhhhhhCCCCChh-HHHHHHHH------HhccCChHHHHHHHHHh--
Q 048766 368 DSVTFLNVLAACSHTDIPF------DKVSEYFESMTKDYGIKPTVE-HCCSMIRL------MGQKGEVWRAQRMIREL-- 432 (525)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~-- 432 (525)
|..++-..+...-+.|+ . ++.+++|+++.. .++|+.. .|...+.. +...++.++|.++|+.+
T Consensus 12 ~yd~W~~yl~llE~~g~-p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSV-PLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp SHHHHHHHHHHHHHHTC-SCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC-CchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45555555555555565 4 566666666554 4444321 11111111 12235566666666554
Q ss_pred -CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 433 -GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 433 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
...- ...|......-.++|+.+.|.+++.+++.+.|.+...+.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 1111 444444444455566666666666666666654444333
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.17 Score=40.10 Aligned_cols=102 Identities=12% Similarity=0.076 Sum_probs=62.2
Q ss_pred HHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHH
Q 048766 47 FYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI 126 (525)
Q Consensus 47 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 126 (525)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+....+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 344567777777776655 3455677777777777777777777776543 33444444556666666555
Q ss_pred HHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhc
Q 048766 127 HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165 (525)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 165 (525)
-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55544444 2344445555667777777776554
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.41 E-value=0.016 Score=42.93 Aligned_cols=84 Identities=5% Similarity=-0.134 Sum_probs=65.9
Q ss_pred ChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHH---HHHHHHHHHhhc-C-CChhHHHHHHHHHhhccChhHHHH
Q 048766 421 EVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDV---ARISAAEVIKLE-G-DSDYVYVMLCNLYTSHGNWDVASV 493 (525)
Q Consensus 421 ~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~ 493 (525)
....+.+.+.+. ...++..+-..+.+++.++++... ++.+++.+++.+ | ........|+.++.+.|++++|++
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344445555543 224777888889999998886666 999999999987 5 466778899999999999999999
Q ss_pred HHHHHHHcCCc
Q 048766 494 MRNFMRERGLR 504 (525)
Q Consensus 494 ~~~~~~~~~~~ 504 (525)
+.+.+.+..+.
T Consensus 96 ~~~~lL~~eP~ 106 (126)
T 1nzn_A 96 YVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHhCCC
Confidence 99999887653
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.18 Score=40.01 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=67.2
Q ss_pred HHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchH
Q 048766 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389 (525)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a 389 (525)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+ .+..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~-~e~L 79 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGD-VNKL 79 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTC-HHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCC-HHHH
Confidence 3455678888888887766 4566788888888888888888888887755 3355555555565 4444
Q ss_pred HHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhC
Q 048766 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433 (525)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (525)
.++-+....+ | + ++.-...+.-.|+++++.+++.+.+
T Consensus 80 ~kla~iA~~~-g---~---~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 80 SKMQNIAQTR-E---D---FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHT-T---C---HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHC-c---c---HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 4444333222 1 1 3333445556788888888877754
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.09 E-value=0.13 Score=38.76 Aligned_cols=74 Identities=8% Similarity=0.018 Sum_probs=58.6
Q ss_pred CCChhHHHHHHHHHhccCChH---HHHHHHHHh-CCCC--chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 403 KPTVEHCCSMIRLMGQKGEVW---RAQRMIREL-GFGS--YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
.|++.+-..+.+++.+..+.. +++.+++++ ...| .......+.-++.+.|++++|.++.+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 578888888888888877554 678888876 2233 3556777888999999999999999999999998776644
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.94 E-value=0.34 Score=36.06 Aligned_cols=127 Identities=13% Similarity=-0.014 Sum_probs=70.6
Q ss_pred hHHHHHHH--HhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC----------------
Q 048766 5 VLFHLLRA--SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---------------- 66 (525)
Q Consensus 5 ~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------- 66 (525)
+...|+.+ ..-.|..++..++.....+.. +..-+|=++--....-+=+...++++.+-.
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C 83 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVEC 83 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHH
Confidence 44455554 445578888888888777664 222233222222222333333333332211
Q ss_pred -----CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHccc
Q 048766 67 -----PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135 (525)
Q Consensus 67 -----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 135 (525)
.+....+.-+..+..+|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 84 ~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 2344556666666667777776666666433 2456666666677777777777777777776666664
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.042 Score=54.93 Aligned_cols=57 Identities=16% Similarity=-0.004 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
..-...|...|+++-|+++.+++...-|.+-.+|..|+.+|...|+|+.|+-.++.+
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334556778899999999999999999999999999999999999999999999877
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.89 E-value=0.056 Score=40.20 Aligned_cols=75 Identities=8% Similarity=0.015 Sum_probs=57.5
Q ss_pred CCCChhHHHHHHHHHhccCCh---HHHHHHHHHh-CCCC--chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHH
Q 048766 402 IKPTVEHCCSMIRLMGQKGEV---WRAQRMIREL-GFGS--YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475 (525)
Q Consensus 402 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 475 (525)
-.|++.+-..+++++.+..+. .+++.+++++ ...| ....+..+..++.+.|++++|.++.+.+++.+|+|..+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 356777777788888877654 4677888776 3234 355677888899999999999999999999999887765
Q ss_pred H
Q 048766 476 V 476 (525)
Q Consensus 476 ~ 476 (525)
.
T Consensus 116 ~ 116 (134)
T 3o48_A 116 A 116 (134)
T ss_dssp H
T ss_pred H
Confidence 4
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=95.66 E-value=1 Score=39.59 Aligned_cols=153 Identities=12% Similarity=0.024 Sum_probs=88.3
Q ss_pred hhhhhHHHHHHHHhCCCc-hHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHH----HH
Q 048766 19 DTYCQQLHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNL----FV 93 (525)
Q Consensus 19 ~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~----~~ 93 (525)
++...+-++.-++.|--- -...|.++..-|.+.+++++|++++.. -...+.+.|+...|.++ ++
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHH
Confidence 333333444444444111 234556677778888899999886542 33445667887766664 55
Q ss_pred HHHhcCCCCCHhhHHHHHHHHcccCChH-HHHHHHHHHH----Hccc--CCCcchhhHHHHHHHhcCCHHHHHHHHhhcc
Q 048766 94 ELERSEIYADAYSFTSALAACGQLGSLQ-LGMAIHSKIV----KYSL--ERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166 (525)
Q Consensus 94 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 166 (525)
...+.+++++......++..+.....-+ .-.++++.++ +.|- .-++.....+...|.+.|++.+|+.-|-.-.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 5666788899888888887776543211 1233333333 3332 1255667777788888888888877664222
Q ss_pred CCChhhHHHHHHHHHh
Q 048766 167 DKDIISWNSVIAASAR 182 (525)
Q Consensus 167 ~~~~~~~~~l~~~~~~ 182 (525)
..|...+..++.-+..
T Consensus 162 ~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHH
Confidence 2234455544444443
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.60 E-value=0.15 Score=38.80 Aligned_cols=98 Identities=17% Similarity=0.257 Sum_probs=47.0
Q ss_pred CCCHhHHHHHHHHHHhcCCh------hHHHHHHHHHhhCCCCCCCHh----HHHHH--HH-HHcCCCCCcchHHHHHHHh
Q 048766 330 RKNLVTWNAMITGYARNGDL------TKVIELFEQLKTVRDLQPDSV----TFLNV--LA-ACSHTDIPFDKVSEYFESM 396 (525)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~~----~~~~l--~~-~~~~~~~~~~~a~~~~~~~ 396 (525)
+.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+ -. .+...++ .++|.++|+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D-~d~aR~vy~~a 86 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQE-PDDARDYFQMA 86 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHC-GGGCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence 34555555555555555666 5566666665553 444321 01000 00 0111234 66666666665
Q ss_pred hhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 397 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
... .-.. ...|...++.-.+.|++..|.+++.+.
T Consensus 87 ~~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 87 RAN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HHH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 443 1111 444544555555666666666666554
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.59 E-value=0.13 Score=38.88 Aligned_cols=71 Identities=8% Similarity=-0.109 Sum_probs=58.6
Q ss_pred CCCchhHHHHHHHHHhcCC---ChHHHHHHHHHHHhhcCC-ChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 434 FGSYGVVWRALLSASGACS---DLDVARISAAEVIKLEGD-SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 434 ~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
..|+..+-..+.+++.++. +..+++.+++.+++..|. .......|+..+.+.|++++|+++.+.+.+..+.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3577777778888888776 456789999999998884 5667888999999999999999999999876553
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.53 E-value=2.6 Score=43.26 Aligned_cols=257 Identities=13% Similarity=0.042 Sum_probs=133.8
Q ss_pred HHHHhCCChHHHHHHHhcCCC----CCcc--hHHHHHHHHHhcCChHHHHHHHhcCCC-CC----------cccHHHHHH
Q 048766 178 AASARNGNLELAFGFLHRLPN----PDTI--SYNEVINGIAQFGDIEDAIMILSSMPS-PN----------SSSWNSILT 240 (525)
Q Consensus 178 ~~~~~~~~~~~a~~~~~~~~~----~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----------~~~~~~l~~ 240 (525)
-+....|+.++++.++..... .+.. .-..+.-+....|..+++..++..... ++ ...-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 346678888888888888733 2222 222333445556665566665554432 22 111222333
Q ss_pred HHHhcCC-hhHHHHHHHHHhhCCCCCCHHHHH--HHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCC
Q 048766 241 GYVNRNR-VPEALHLFGEMQSKDVPMDEYTFS--TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317 (525)
Q Consensus 241 ~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 317 (525)
+.+-.|. -+++.+.+..+....- +...... .+...+...|+.+....++..+.+.. ..+..-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 3333333 2456666666654321 1111112 22333456677777777777666532 2222223333334446778
Q ss_pred HHHHHHHHHhcc-CCCHh-HHH---HHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHH
Q 048766 318 VEIADSMFRSLC-RKNLV-TWN---AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392 (525)
Q Consensus 318 ~~~A~~~~~~~~-~~~~~-~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~ 392 (525)
.+.+..+++.+. ..++. -|. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+ .+.+.++
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~--~d~VRraAViaLGlI~~g~-~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS--NDDVRRAAVIALGFVLLRD-YTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTSSS-CSSHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHhhccCC-HHHHHHH
Confidence 777777777765 23333 232 23455667788777777888877632 2233333333334445666 6667777
Q ss_pred HHHhhhhhCCCCChhHHHHHHHHHhccCCh-HHHHHHHHHhCCCCchhHH
Q 048766 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEV-WRAQRMIRELGFGSYGVVW 441 (525)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~ 441 (525)
++.+.+ ...|.+..-..+.-+....|.. .+|+.++..+...++..+-
T Consensus 617 v~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 617 VQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp TTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 766654 2244444444444444445544 5777788877444554433
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.11 E-value=0.074 Score=39.55 Aligned_cols=71 Identities=8% Similarity=-0.109 Sum_probs=58.1
Q ss_pred CCCchhHHHHHHHHHhcCC---ChHHHHHHHHHHHhhcCC-ChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 434 FGSYGVVWRALLSASGACS---DLDVARISAAEVIKLEGD-SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 434 ~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
..|++.+-..+.+++.++. +..+++.+++.+++.+|. ....+..|+.++.+.|++++|+++.+.+.+..+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3566777777888887766 456789999999998884 4677889999999999999999999999876543
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.73 E-value=4.4 Score=41.62 Aligned_cols=255 Identities=10% Similarity=-0.023 Sum_probs=137.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC----Cc--ccHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCC---H--HHHHHH-
Q 048766 208 INGIAQFGDIEDAIMILSSMPSP----NS--SSWNSILTGYVNRNRVPEALHLFGEMQSKDV--PMD---E--YTFSTM- 273 (525)
Q Consensus 208 ~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~---~--~~~~~l- 273 (525)
.-+....|+.+++..++...... +. ..-..+.-+.+..|..+++..++.......- .-+ . ..-.++
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 34566788999999999887641 11 1223344456677777778888877665321 011 1 111222
Q ss_pred -HHHhccccchHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCCHHHHHHHHHhccC-CCHhHH--HHHHHHHHhcCC
Q 048766 274 -LSGIAGLSALTWGMLIHSCVIKQGLDA-SIVVASALLDMYSKCGQVEIADSMFRSLCR-KNLVTW--NAMITGYARNGD 348 (525)
Q Consensus 274 -~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~--~~l~~~~~~~~~ 348 (525)
.-++...++ +++...+..+....... ....-.++...+...|+.+....++..+.. .+.... -.+.-++...|+
T Consensus 461 LGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 461 IGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 222333333 34455555554433111 112233445556678888888888776642 222222 333344557899
Q ss_pred hhHHHHHHHHHhhCCCCCCCHhHHH--HHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHH
Q 048766 349 LTKVIELFEQLKTVRDLQPDSVTFL--NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426 (525)
Q Consensus 349 ~~~a~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 426 (525)
.+.+..+.+.+... ..|-...-. .+.-+|+..|+ .....+++..+..+ ...++.....+.-++...|+.+.+.
T Consensus 540 ~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn-~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 540 QELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGN-NSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp GGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCC-HHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred hHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 99999999988873 233322222 33445677776 55555588877652 2333443344444555577777777
Q ss_pred HHHHHh--CCCCchhHHHHHHHHHhcCCC-hHHHHHHHHHHHhhcC
Q 048766 427 RMIREL--GFGSYGVVWRALLSASGACSD-LDVARISAAEVIKLEG 469 (525)
Q Consensus 427 ~~~~~~--~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p 469 (525)
++++.+ ..+|....-..+..+....|. ..+++..+.++.. ++
T Consensus 615 rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~ 659 (963)
T 4ady_A 615 RIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DP 659 (963)
T ss_dssp HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CC
Confidence 777765 223443333333333333333 3677888887753 44
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.72 E-value=0.26 Score=38.40 Aligned_cols=86 Identities=12% Similarity=-0.079 Sum_probs=55.7
Q ss_pred HHHHhccCChHHHHHHHHHh----CCCCc-------hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc---CC--------
Q 048766 413 IRLMGQKGEVWRAQRMIREL----GFGSY-------GVVWRALLSASGACSDLDVARISAAEVIKLE---GD-------- 470 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~----~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~-------- 470 (525)
++.+...|.++.|+-+.+-+ +.+|+ ..++..++.++...|++.+|...|++++... |.
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 44555666666666665543 11222 1244556667777777777777777765532 11
Q ss_pred --------------ChhHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 471 --------------SDYVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 471 --------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
+.+.-+.++.+|.+.|++++|+.+++.+
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 2256678999999999999999998754
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.69 E-value=0.09 Score=48.66 Aligned_cols=68 Identities=12% Similarity=0.012 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH-----cCCccCCcc
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE-----RGLRKEAGC 509 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 509 (525)
..++..+...|++++|+..++.++..+|-+...+..|+.++.+.|+..+|++.|+++.+ .|+.|.|..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556666788888888888888888888888888888888888888888888887654 477666543
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.65 E-value=2.2 Score=37.80 Aligned_cols=170 Identities=15% Similarity=0.088 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHH----HHHhhCCCCCCCHhHHHHHHHH
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF----EQLKTVRDLQPDSVTFLNVLAA 378 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~p~~~~~~~l~~~ 378 (525)
.+|.++..=|.+.+++++|.+++-.. ...+.+.|+...+.++- +-..+.+ +++|......++..
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~-~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAG-QRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Confidence 45666777788889999998876543 23445556655544433 4445555 77787777777777
Q ss_pred HcCCCCCcc-hHHHHHHHhhh---hhCC--CCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCC
Q 048766 379 CSHTDIPFD-KVSEYFESMTK---DYGI--KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452 (525)
Q Consensus 379 ~~~~~~~~~-~a~~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~ 452 (525)
+..... -+ .=..+.+++.+ .+|- .-++.....++..|.+.+++.+|...|- .+..+++..+..++.-+...+
T Consensus 104 ~~~~~~-~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 104 LRLFQP-GEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HTTSCT-TCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTS
T ss_pred HHhCCC-CCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhc
Confidence 665543 11 11223333322 1132 2367788888999999999999988873 344444456655554444433
Q ss_pred ChHHHHHHHHHHHhhcCCChhHHHH-HHHHHhhccChhHHHHHHHHHHHc
Q 048766 453 DLDVARISAAEVIKLEGDSDYVYVM-LCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 453 ~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
. |.....|.. ..--|...++...|..+++...+.
T Consensus 182 ~---------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~ 216 (336)
T 3lpz_A 182 E---------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSA 216 (336)
T ss_dssp C---------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C---------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2 323333333 333466778899999888777654
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.76 E-value=2.7 Score=38.52 Aligned_cols=89 Identities=15% Similarity=-0.124 Sum_probs=60.3
Q ss_pred HHHHHHhccCChHHHHHHHHHh----CCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc---CCChhH----H
Q 048766 411 SMIRLMGQKGEVWRAQRMIREL----GFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLE---GDSDYV----Y 475 (525)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~----~ 475 (525)
.++..|...|++.+|.+++.++ ....+ ..++..-+..|...|++.++...+.++.... |.+|.. .
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5788888889999988888776 21111 1233444567778889999999988887643 224433 3
Q ss_pred HHHHHHHh-hccChhHHHHHHHHHH
Q 048766 476 VMLCNLYT-SHGNWDVASVMRNFMR 499 (525)
Q Consensus 476 ~~l~~~~~-~~g~~~~A~~~~~~~~ 499 (525)
..-|..+. ..++|.+|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 34455667 7899999888876654
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.40 E-value=4 Score=36.21 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHH----HHHHhcCCCCCHhhHHHHHHHH
Q 048766 39 FVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF----VELERSEIYADAYSFTSALAAC 114 (525)
Q Consensus 39 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~~~~~ll~~~ 114 (525)
..|.++..-|.+.+++++|++++- .-...+.+.|+...|.++. +.+.+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~-----------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILA-----------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 355566677888899999988654 2344556678876665554 5566778899988888888877
Q ss_pred cccCChH-HHHHHHHHHH----Hcc--cCCCcchhhHHHHHHHhcCCHHHHHHHH
Q 048766 115 GQLGSLQ-LGMAIHSKIV----KYS--LERGVVIANCLIDMYGKCGSVEDAIGVF 162 (525)
Q Consensus 115 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 162 (525)
.....-+ .-..+.+.++ +.| ..-|+.....+...|.+.+++.+|+.-|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6654321 1122333333 223 1224555666667777777777776666
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.31 E-value=5.4 Score=37.47 Aligned_cols=92 Identities=12% Similarity=0.112 Sum_probs=60.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh-----CCCCc---hhHHHHHHHHHhcCCChHHHHHHHHHHHh---hcCCCh----h
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL-----GFGSY---GVVWRALLSASGACSDLDVARISAAEVIK---LEGDSD----Y 473 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~p~~~----~ 473 (525)
...|+..|...|++.+|..++.++ +..+. ...+...+..|...+|+.+|...+.++.. ..|.++ .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345677777888888888888776 22222 23455556777778888888888887643 123233 2
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 474 VYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.+...+..+...++|.+|-+.|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 355677777788888888877776644
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.14 E-value=0.61 Score=36.31 Aligned_cols=136 Identities=13% Similarity=0.001 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH-------hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChh
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS-------VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 407 (525)
.+-.-+..+...|.++.|+-+...+....+.+|+. .++..+..++...++ +.+|...|+........-+...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~e-yrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKE-YRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHHhcCC
Confidence 34444566667777777777776654422123331 245566666777777 7777777777544322211111
Q ss_pred -HHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 408 -HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 408 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
....+. ....... ......+...-..+...|.+.|++++|+..++.+-...- ++.+-..|++.|
T Consensus 101 s~~~~~~----~~ss~p~------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R-t~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTG----NSASTPQ------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR-TPKINMLLANLY 165 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC-CHHHHHHHHHHC
T ss_pred Ccccccc----ccCCCcc------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc-CHHHHHHHHHHh
Confidence 100000 0000000 001112334444566677778888888887776544433 556666666655
No 253
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.10 E-value=7.2 Score=38.31 Aligned_cols=449 Identities=10% Similarity=-0.002 Sum_probs=226.5
Q ss_pred ccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC-CCc-ccHHHHHHHHHhcCChHHHHHHH
Q 048766 15 DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ-PSV-VSWNSLISGYVQSGKYRKALNLF 92 (525)
Q Consensus 15 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~ll~~~~~~~~~~~A~~~~ 92 (525)
+.|+...+.++-..+....+.|- ..|..|...+ .....+++...+++.+. |-. ..-+.-+..+.+.+++...+..+
T Consensus 18 ~~~~~~~~~~l~~~l~~~pL~~y-l~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~ 95 (618)
T 1qsa_A 18 DNRQMDVVEQMMPGLKDYPLYPY-LEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS 95 (618)
T ss_dssp HTTCHHHHHHHSGGGTTSTTHHH-HHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HCCCHHHHHHHHHhhcCCCcHHH-HHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhc
Confidence 45666666665554432222111 2333333222 22356666666666654 222 12234455566677777666544
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhh
Q 048766 93 VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS 172 (525)
Q Consensus 93 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 172 (525)
.. .+.+...-.....+....|+...|......+-..| ...+..+..++..+.+.|.+....
T Consensus 96 ~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~------------- 156 (618)
T 1qsa_A 96 PE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLA------------- 156 (618)
T ss_dssp CS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHH-------------
T ss_pred cC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHH-------------
Confidence 32 12334434445556666777777777666666665 445667777777777666543221
Q ss_pred HHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcc---cHHHHHHHHHhcCChh
Q 048766 173 WNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS---SWNSILTGYVNRNRVP 249 (525)
Q Consensus 173 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~ 249 (525)
.-.-+......|+...|..+...+..........++..+.+ ...+........ ++.. .+..-+.-+.+ .+.+
T Consensus 157 ~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar-~d~~ 231 (618)
T 1qsa_A 157 YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTRQMAAVAFASVAR-QDAE 231 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHHHHHHHHHHHHHH-HCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccC-CChhhHHHHHHHHHHHHh-cCHH
Confidence 11112344556666777766666632221222333333322 223333332221 2211 11112223333 4789
Q ss_pred HHHHHHHHHhhCCCCCCHHHH----HHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHH
Q 048766 250 EALHLFGEMQSKDVPMDEYTF----STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325 (525)
Q Consensus 250 ~a~~~~~~m~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 325 (525)
.|...+....... ..+.... ..+.......+...++...+....... .+.......+....+.|+++.|...|
T Consensus 232 ~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~ 308 (618)
T 1qsa_A 232 NARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWL 308 (618)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999998886543 2333322 233334445553445555555544333 33333444555566789999999999
Q ss_pred HhccCCC---HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCC
Q 048766 326 RSLCRKN---LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402 (525)
Q Consensus 326 ~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~ 402 (525)
+.+.... ....-=+..++...|+.++|..+|+.+... . +|..++.+- +.|.++.-... .... ..
T Consensus 309 ~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~---~fYg~lAa~-~Lg~~~~~~~~---~~~~--~~ 375 (618)
T 1qsa_A 309 ARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R---GFYPMVAAQ-RIGEEYELKID---KAPQ--NV 375 (618)
T ss_dssp HHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C---SHHHHHHHH-HTTCCCCCCCC---CCCS--CC
T ss_pred HHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C---ChHHHHHHH-HcCCCCCCCCC---CCCh--hH
Confidence 9997432 223334566778899999999999998751 1 233333221 22221110000 0000 00
Q ss_pred CCC--hhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC---CChhHHHH
Q 048766 403 KPT--VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG---DSDYVYVM 477 (525)
Q Consensus 403 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~ 477 (525)
... ......-+..+...|....|...+..+....+......+.......|.++.++....+....+. .-|..|..
T Consensus 376 ~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~ 455 (618)
T 1qsa_A 376 DSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYND 455 (618)
T ss_dssp CCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHH
T ss_pred HhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHH
Confidence 000 0011223456678899999998888762223334344455555678888888766654332210 01233455
Q ss_pred HHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 478 LCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
++..+.+.-.++.++-+---.++.+..|
T Consensus 456 ~i~~~a~~~gv~~~ll~Ai~~~ES~f~p 483 (618)
T 1qsa_A 456 LFKRYTSGKEIPQSYAMAIARQESAWNP 483 (618)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCC
Confidence 5555555555555544433334555444
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=92.61 E-value=1.8 Score=30.11 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=64.7
Q ss_pred CchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 048766 17 GWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96 (525)
Q Consensus 17 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 96 (525)
.+.++|.-+-+.+...+. ...+...-+..+...|++++|..+.+....||...|-++-.. +.|--+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 467889999888887774 444444445557788999999999999999999999877664 6677788887777777
Q ss_pred hcCCCCCHhhHH
Q 048766 97 RSEIYADAYSFT 108 (525)
Q Consensus 97 ~~~~~p~~~~~~ 108 (525)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 44444443
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=92.58 E-value=1.6 Score=30.20 Aligned_cols=87 Identities=11% Similarity=0.050 Sum_probs=65.8
Q ss_pred CchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 048766 17 GWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96 (525)
Q Consensus 17 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 96 (525)
.+.++|.-+-+.+...+. ...+...-+..+...|++++|..+.+....||...|-++-.. +.|--+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 467889999888887774 444444445557788999999999999999999999877664 7788888888887887
Q ss_pred hcCCCCCHhhHH
Q 048766 97 RSEIYADAYSFT 108 (525)
Q Consensus 97 ~~~~~p~~~~~~ 108 (525)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 45544444
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.24 E-value=0.71 Score=39.27 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=29.9
Q ss_pred HhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 416 MGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 416 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
..+.|++++|++.+..- ...| |...-..|+..++-.|++++|..-++-+.+++|
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 44556666666655543 2223 333444455556666666666666666666666
No 257
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=91.00 E-value=5.7 Score=32.56 Aligned_cols=9 Identities=33% Similarity=0.364 Sum_probs=3.3
Q ss_pred HHHHHHhcC
Q 048766 145 LIDMYGKCG 153 (525)
Q Consensus 145 l~~~~~~~g 153 (525)
.+..+.+.|
T Consensus 39 A~~~L~~~~ 47 (211)
T 3ltm_A 39 AAYALGKIG 47 (211)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 333333333
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.75 E-value=8.2 Score=33.96 Aligned_cols=171 Identities=12% Similarity=0.054 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHH----HHHHhhCCCCCCCHhHHHHHHHH
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL----FEQLKTVRDLQPDSVTFLNVLAA 378 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~p~~~~~~~l~~~ 378 (525)
..|.++..=|.+.+++++|.+++... ...+.+.|+...|.++ ++-..+.+ .+++......++..
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~-~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAE-VKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Confidence 45566677788888888888876543 3345566776655553 44445555 78888777777777
Q ss_pred HcCCCCCcchHHHHHHHhhhhh---CC--CCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcC--
Q 048766 379 CSHTDIPFDKVSEYFESMTKDY---GI--KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC-- 451 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-- 451 (525)
+..-......=.++++++.+-. |- .-++.....++..|.+.|++.+|...|- .+...++..+..++.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~ 180 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVD 180 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcC
Confidence 6653321222234444443211 21 2367788888999999999999888775 33222445555444444333
Q ss_pred -CChHHHHHHHHHHHhhcCCChhHHH-HHHHHHhhccChhHHHHHHHHHHHc
Q 048766 452 -SDLDVARISAAEVIKLEGDSDYVYV-MLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 452 -~~~~~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
|...+ ...|. ...--|.-.|+...|..+++...+.
T Consensus 181 ~~~~~e---------------~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 181 DIEDST---------------VAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CCCHHH---------------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCCcch---------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33332 22222 2222355678888999888877654
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.73 E-value=3 Score=28.93 Aligned_cols=88 Identities=13% Similarity=0.042 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361 (525)
Q Consensus 282 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (525)
..++|..|-+.+...+. ...+-..-+..+.+.|++++|..+.+...-||...|-.|-. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666666655553 33333334556788999999999999999999998877654 577888888888888887
Q ss_pred CCCCCCCHhHHHHH
Q 048766 362 VRDLQPDSVTFLNV 375 (525)
Q Consensus 362 ~~~~~p~~~~~~~l 375 (525)
.| .|....|..-
T Consensus 97 sg--~p~~q~Fa~g 108 (115)
T 2uwj_G 97 SS--DPALADFAAG 108 (115)
T ss_dssp CS--SHHHHHHHHH
T ss_pred CC--CHHHHHHHHH
Confidence 76 6666555443
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.41 E-value=3.3 Score=28.82 Aligned_cols=88 Identities=19% Similarity=0.114 Sum_probs=61.9
Q ss_pred chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361 (525)
Q Consensus 282 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (525)
..++|..|-+.+...+. ...+-..-+..+.+.|++++|..+.+...-||...|-.|-. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666666665553 33333334556788999999999999999999998877654 467888888888888877
Q ss_pred CCCCCCCHhHHHHH
Q 048766 362 VRDLQPDSVTFLNV 375 (525)
Q Consensus 362 ~~~~~p~~~~~~~l 375 (525)
.| .|....|..-
T Consensus 98 sg--~p~~q~Fa~g 109 (116)
T 2p58_C 98 SQ--DPRIQTFVNG 109 (116)
T ss_dssp CC--CHHHHHHHHH
T ss_pred CC--CHHHHHHHHH
Confidence 76 6666555443
No 261
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.45 E-value=2.9 Score=41.99 Aligned_cols=121 Identities=9% Similarity=0.081 Sum_probs=73.2
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHhhCCCCCCHHH-H-HHHHHHhcccc-chHHHHHHHHHHHHh------CCCc-h----
Q 048766 237 SILTGYVNRNR-VPEALHLFGEMQSKDVPMDEYT-F-STMLSGIAGLS-ALTWGMLIHSCVIKQ------GLDA-S---- 301 (525)
Q Consensus 237 ~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~-~-~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~---- 301 (525)
.++..+...++ .+.|..+|+++... .|.... + ..++..+...+ +--+|.+++.+..+. ..++ +
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 34444444555 57799999998876 333222 2 23333333332 222344444433321 1111 1
Q ss_pred ------HHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 048766 302 ------IVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQL 359 (525)
Q Consensus 302 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (525)
......=.+.+...|+++.|.++-++.. +.+-.+|..|..+|...|+++.|+-.+..+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1122222444667899999999998886 456789999999999999999999998876
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.29 E-value=2.6 Score=29.45 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHH
Q 048766 85 YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146 (525)
Q Consensus 85 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 146 (525)
.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-.+..- .....+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 33455556666666677777777777777777777777777777665442 23344565554
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.24 E-value=14 Score=39.64 Aligned_cols=189 Identities=10% Similarity=0.042 Sum_probs=111.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-------------------
Q 048766 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP------------------- 367 (525)
Q Consensus 307 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p------------------- 367 (525)
.++..+...+..+.+.++..-+ +.++..--.++.++...|++++|.+.|++... | +.+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~-~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-V-LYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-S-CTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-h-hcccchhhhhhccccccccccc
Confidence 4555666677777776655443 44544445567778888888888888877532 1 110
Q ss_pred ----CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC---hhHHHHHHHHHhccCChHHHHHHHHHhCC-CCchh
Q 048766 368 ----DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT---VEHCCSMIRLMGQKGEVWRAQRMIRELGF-GSYGV 439 (525)
Q Consensus 368 ----~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 439 (525)
-..-|..++..+.+.+. ++.+.++-+...+..+-.++ ...|..+.+.+...|++++|...+-.++. .-...
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~-~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~ 972 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESA-YIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKS 972 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHH
T ss_pred ccccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHH
Confidence 11235667777777787 88888887776654111111 22577788888889999999888877621 12244
Q ss_pred HHHHHHHHHhcCCC------------hHHHHHHHHH-HHhh-cCCC-hhHHHHHHHHHhhccChhHHHHH-HHHHH
Q 048766 440 VWRALLSASGACSD------------LDVARISAAE-VIKL-EGDS-DYVYVMLCNLYTSHGNWDVASVM-RNFMR 499 (525)
Q Consensus 440 ~~~~l~~~~~~~~~------------~~~A~~~~~~-~~~~-~p~~-~~~~~~l~~~~~~~g~~~~A~~~-~~~~~ 499 (525)
.+..|+..++..|. .++..+++.. +... +|.+ |..|..|=.-+...|++-.|-.+ |+.+.
T Consensus 973 cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 55566655554443 3444444432 2222 3433 34455555556667777766554 55443
No 264
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=88.50 E-value=9.1 Score=31.28 Aligned_cols=9 Identities=11% Similarity=0.401 Sum_probs=3.3
Q ss_pred HHHHHHhcC
Q 048766 207 VINGIAQFG 215 (525)
Q Consensus 207 l~~~~~~~~ 215 (525)
.+..+.+.+
T Consensus 39 A~~~L~~~~ 47 (211)
T 3ltm_A 39 AAYALGKIG 47 (211)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 333333333
No 265
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.33 E-value=7.7 Score=35.65 Aligned_cols=58 Identities=12% Similarity=-0.070 Sum_probs=42.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
...++..+...|++++|+..+..+ ... -+...+..++.++...|+..+|++.|++..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445667777888888888777776 222 3456778888888888888888888887654
No 266
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=87.08 E-value=11 Score=30.53 Aligned_cols=18 Identities=22% Similarity=0.387 Sum_probs=6.7
Q ss_pred CCcchHHHHHHHHHhcCC
Q 048766 199 PDTISYNEVINGIAQFGD 216 (525)
Q Consensus 199 ~~~~~~~~l~~~~~~~~~ 216 (525)
++..+-...+.++...++
T Consensus 57 ~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGD 74 (201)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhhCC
Confidence 333333333333333333
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.84 E-value=5.4 Score=37.25 Aligned_cols=91 Identities=11% Similarity=-0.068 Sum_probs=45.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh-----CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc--CCChhH----HH
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL-----GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE--GDSDYV----YV 476 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~----~~ 476 (525)
....+++.|.+.|++++|.+.+.++ +.......+...+..+...+|+..+...+.++.... ..++.. ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 3445555666666666666666554 222223444555555555566666666666655432 112221 11
Q ss_pred HHHHHHhhccChhHHHHHHHHH
Q 048766 477 MLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
..+..+...++|.+|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2333344556666665555444
No 268
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.94 E-value=22 Score=38.15 Aligned_cols=86 Identities=5% Similarity=-0.047 Sum_probs=58.3
Q ss_pred hHHHHHHHHcccCChHHHHHHHHHHHHcccCCCc----chhhHHHHHHHhcCCHHHHHHHHhhccCC--ChhhHHHHHHH
Q 048766 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV----VIANCLIDMYGKCGSVEDAIGVFGEMIDK--DIISWNSVIAA 179 (525)
Q Consensus 106 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~ 179 (525)
-|..++..+.+.+.++.+.+.-...++...+.+. ..|..+.+.+...|++++|-..+-.+... -......++..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4677777777888888888777766665322221 25677788888888888888887766443 23466777777
Q ss_pred HHhCCChHHHHH
Q 048766 180 SARNGNLELAFG 191 (525)
Q Consensus 180 ~~~~~~~~~a~~ 191 (525)
++..|..+.-..
T Consensus 981 lce~~~~~~L~~ 992 (1139)
T 4fhn_B 981 LTKQGKINQLLN 992 (1139)
T ss_dssp HHHHCCHHHHHH
T ss_pred HHhCCChhhhhC
Confidence 777777655443
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.88 E-value=2.9 Score=35.61 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=22.9
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhh
Q 048766 344 ARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMT 397 (525)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 397 (525)
.+.|+.+++++....-.+ ..| |...-..++..+|-.|+ +++|.+-++...
T Consensus 8 l~~g~L~~al~~~~~~VR---~~P~da~~R~~LfqLLcv~G~-w~RA~~QL~~~a 58 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGD-FERADEQLMQSI 58 (273)
T ss_dssp TTTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Confidence 344455555554444444 223 33333344444555555 555555444443
No 270
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.76 E-value=8.2 Score=27.04 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHh---CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 421 EVWRAQRMIREL---GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 421 ~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
|.-+..+-++.+ ..-|++.+..+.+.+|.+.+|+..|+++++-+...-.+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 444555555554 66788899999999999999999999999887765443445555443
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.85 E-value=6.4 Score=29.24 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHH
Q 048766 86 RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLID 147 (525)
Q Consensus 86 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 147 (525)
-+..+-++.+...++.|++......+++|.+.+++..|..+|+-.+..- .+...+|..++.
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3455556666667778888888888888888888888888887776542 344556666553
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.72 E-value=11 Score=30.48 Aligned_cols=49 Identities=6% Similarity=0.089 Sum_probs=26.5
Q ss_pred CChHHHHHHHHHh---CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 420 GEVWRAQRMIREL---GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 420 g~~~~A~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
+...++..+|.-| ++... ...|......+-..|++.+|.++|+..++.+
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3344555555554 22222 3445555555556666666666666666644
No 273
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=81.16 E-value=25 Score=30.12 Aligned_cols=47 Identities=4% Similarity=-0.185 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 048766 37 NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83 (525)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~ 83 (525)
+..+-...+..+.+.+..+..-.+.+.+..++...-...+.++...|
T Consensus 36 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 44343344444444444333333333333344333333344444443
No 274
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=80.17 E-value=21 Score=28.65 Aligned_cols=112 Identities=10% Similarity=0.068 Sum_probs=55.3
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 048766 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246 (525)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 246 (525)
.++...-...+.++.+.+..+..-.+.+.+.+++..+-...+.++.+.++.+....+...+..++...-...+.++.+.+
T Consensus 56 ~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 56 DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33444444444445555554444444444455666666666666666666544444444444555554445555555555
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccc
Q 048766 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282 (525)
Q Consensus 247 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 282 (525)
.. .+...+..+.. .++...-...+.++...|.
T Consensus 136 ~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 136 DE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp CG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred CH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 43 33344444433 2344444444555544443
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.07 E-value=19 Score=26.82 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=41.3
Q ss_pred HHHHHHHHh---CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 424 RAQRMIREL---GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 424 ~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
+..+-++.+ ..-|++.+....+.+|.+.+|+..|+++++-+...-.+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 444445544 66789999999999999999999999999988765433455565444
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.98 E-value=12 Score=34.93 Aligned_cols=95 Identities=12% Similarity=0.019 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhccC------CCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHH----
Q 048766 304 VASALLDMYSKCGQVEIADSMFRSLCR------KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL---- 373 (525)
Q Consensus 304 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~---- 373 (525)
+...+...|.+.|+++.|.+.+.++.. .-...+-..++.+...+++..+...+.++...-...++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445677777788888888887777651 1234566667777777888888777777654321122222111
Q ss_pred HHHHHHcCCCCCcchHHHHHHHhhhh
Q 048766 374 NVLAACSHTDIPFDKVSEYFESMTKD 399 (525)
Q Consensus 374 ~l~~~~~~~~~~~~~a~~~~~~~~~~ 399 (525)
.-...+...++ +..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~-f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRN-FKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCh-HHHHHHHHHHHhcc
Confidence 11222344555 77777776666543
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.86 E-value=21 Score=27.40 Aligned_cols=49 Identities=10% Similarity=-0.027 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhc--CCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 457 ARISAAEVIKLE--GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 457 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
+..+|..+...+ -..+..|...+..+...|++.+|.++|+.-.+++-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 555555555533 3344445566666666666666666666555554443
No 278
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.76 E-value=59 Score=30.39 Aligned_cols=96 Identities=8% Similarity=0.094 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCC---HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh-CCCCC----h
Q 048766 336 WNAMITGYARNGDLTKVIELFEQLKTVR-DLQPD---SVTFLNVLAACSHTDIPFDKVSEYFESMTKDY-GIKPT----V 406 (525)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~ 406 (525)
...|...|...|++.+|.+++..+..+- +..+. ...+...++.|...++ +.+|..+++++.... ...++ .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d-~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGD-YSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 4557788888999999999998876432 02221 2455666778888888 999999988874321 22222 2
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
..+...+..+...+++.+|-+.|.++
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34567777888899999998888775
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=71.34 E-value=30 Score=26.95 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 438 GVVWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 438 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
...|......+-..|++.+|.++|+..++.+
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4455556666666777777777777777655
No 280
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=69.23 E-value=53 Score=28.01 Aligned_cols=11 Identities=0% Similarity=-0.188 Sum_probs=4.8
Q ss_pred HHHHHHHHHHh
Q 048766 456 VARISAAEVIK 466 (525)
Q Consensus 456 ~A~~~~~~~~~ 466 (525)
.+...+.++++
T Consensus 252 ~~~~~L~~~l~ 262 (280)
T 1oyz_A 252 TLLPVLDTMLY 262 (280)
T ss_dssp GGHHHHHHHHT
T ss_pred hhhHHHHHHHh
Confidence 34444444444
No 281
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=64.72 E-value=18 Score=28.93 Aligned_cols=43 Identities=5% Similarity=-0.050 Sum_probs=19.0
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccC
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 487 (525)
+..|.+.|.+++|.+++++.....|.+...-..|+.+-.+...
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~ 166 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDT 166 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCT
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCC
Confidence 3445566666666666666555554343333344444333333
No 282
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.37 E-value=19 Score=34.11 Aligned_cols=63 Identities=8% Similarity=0.027 Sum_probs=37.1
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC---hhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT---VEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
...++.+++.|...+. ++.|..+..+..--....++ ...+..+++.+.-.+++.+|.+.+..+
T Consensus 231 a~l~nllLRnYL~~~~-y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGE-VDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSC-STTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCc-HHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4566777777777777 88888887766310000011 112233455666677777777777665
No 283
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.84 E-value=74 Score=33.31 Aligned_cols=91 Identities=10% Similarity=-0.079 Sum_probs=51.6
Q ss_pred HHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCC----------------
Q 048766 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGS---------------- 436 (525)
Q Consensus 375 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~---------------- 436 (525)
++..|...+. .+-+.++.. -.+.++..-..++.+|...|++++|...|+++ +...
T Consensus 816 l~~~L~~~~~-~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 816 LVEKLFLFKQ-YNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHHHHTTC-HHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHHHhcH-HHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccC
Confidence 4555555665 555444332 22234434445677777888888888888776 2111
Q ss_pred -------chhHHHHHHHHHhcCCChHHHHHHHHHHHhh-cCCCh
Q 048766 437 -------YGVVWRALLSASGACSDLDVARISAAEVIKL-EGDSD 472 (525)
Q Consensus 437 -------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~ 472 (525)
....|..++..+-+.+-++.++++.+.+++. .++++
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 0113445555666677777777777777753 34444
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.65 E-value=38 Score=28.29 Aligned_cols=88 Identities=11% Similarity=0.138 Sum_probs=44.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc--CCCC----CHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHH
Q 048766 75 LISGYVQSGKYRKALNLFVELERS--EIYA----DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148 (525)
Q Consensus 75 ll~~~~~~~~~~~A~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (525)
-++.+....++++|++++++..+. ++++ +.......+..-.....-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 355666777777777777766541 2221 111222223332222333333344444422 3344445556677
Q ss_pred HHhcCCHHHHHHHHhhc
Q 048766 149 YGKCGSVEDAIGVFGEM 165 (525)
Q Consensus 149 ~~~~g~~~~a~~~~~~~ 165 (525)
+.+.|+.++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 77778888777777543
No 285
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=57.03 E-value=76 Score=25.63 Aligned_cols=55 Identities=5% Similarity=-0.045 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHHhcCCCCC-HhhHHHHHHHHcccCChHHHHHHHHHHHHcccCC
Q 048766 83 GKYRKALNLFVELERSEIYAD-AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER 137 (525)
Q Consensus 83 ~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 137 (525)
++...+.++|..|...||--. +..|......+...|++.+|.++|..-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335677778887777766543 3345555566667778888887777777766555
No 286
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=55.52 E-value=29 Score=28.20 Aligned_cols=57 Identities=11% Similarity=0.196 Sum_probs=32.1
Q ss_pred cchHHHHHHHhhhhhCCCCCh-hHH-----HHHHHHHhccCChHHHHHHHHHh-CCCCchhHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTV-EHC-----CSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWR 442 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~ 442 (525)
++.|+-+|+.+.+...+..+. ..- ...+-.|.+.|.+++|.+++++. +..++..-..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr 151 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLR 151 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHH
Confidence 567777777776652211111 011 12344567888888888888886 5444444343
No 287
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=54.04 E-value=47 Score=31.53 Aligned_cols=46 Identities=15% Similarity=0.037 Sum_probs=25.8
Q ss_pred CCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHH
Q 048766 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496 (525)
Q Consensus 451 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (525)
...++.|...|.++..+.|++...|+.|+.+....|+.-+|.-+|-
T Consensus 165 ~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~ 210 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC 210 (497)
T ss_dssp TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHH
Confidence 3445556666666666666666666666666555555555444433
No 288
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=53.45 E-value=79 Score=24.74 Aligned_cols=52 Identities=13% Similarity=0.008 Sum_probs=36.5
Q ss_pred HhcCCChHHHHHHHHHHHh-----------------hcCCChhH-HHHHHHHHhhccChhHHHHHHHHHH
Q 048766 448 SGACSDLDVARISAAEVIK-----------------LEGDSDYV-YVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 448 ~~~~~~~~~A~~~~~~~~~-----------------~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
+.+.+++..|+..++.+++ .+|.|.+. +..++..+...|+.+||+.++..--
T Consensus 72 y~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 72 YKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 4456667777777776662 12445544 5678889999999999999987543
No 289
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=52.63 E-value=11 Score=23.36 Aligned_cols=47 Identities=17% Similarity=-0.043 Sum_probs=23.0
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCccC
Q 048766 459 ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506 (525)
Q Consensus 459 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 506 (525)
+.++.+.++.| +......-..+-...|+.+.|+..+-.|...+..++
T Consensus 11 e~l~~L~emFP-~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 11 EDLKAIQDMFP-NMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHCS-SSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHCC-CCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 33344444455 333333223333445666767666666655555443
No 290
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=51.15 E-value=1.1e+02 Score=25.72 Aligned_cols=23 Identities=4% Similarity=-0.087 Sum_probs=14.0
Q ss_pred HHHHHHccCCHHHHHHHHhcCCC
Q 048766 44 LMGFYRKINSLADAHKMFVEIPQ 66 (525)
Q Consensus 44 ll~~~~~~~~~~~a~~~~~~~~~ 66 (525)
.+...++.|+.+.+..+++.-..
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g~~ 30 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGGAN 30 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC
Confidence 34445566777777777665544
No 291
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=49.95 E-value=49 Score=26.89 Aligned_cols=71 Identities=7% Similarity=-0.071 Sum_probs=43.0
Q ss_pred hHHHHHHHHHh----CCCCc-hhHH-----HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHH
Q 048766 422 VWRAQRMIREL----GFGSY-GVVW-----RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA 491 (525)
Q Consensus 422 ~~~A~~~~~~~----~~~~~-~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 491 (525)
.+.|+.+|+.+ +.... .... ...+..|.+.|.+++|.+++++.....|.+...-..|+.+-.+...+...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~ 167 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPV 167 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHH
Confidence 45677777766 11111 1112 23456789999999999999999987664433444555555544444444
Q ss_pred H
Q 048766 492 S 492 (525)
Q Consensus 492 ~ 492 (525)
+
T Consensus 168 l 168 (235)
T 3bu8_A 168 I 168 (235)
T ss_dssp H
T ss_pred H
Confidence 3
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.02 E-value=79 Score=26.37 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=16.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhh
Q 048766 238 ILTGYVNRNRVPEALHLFGEMQS 260 (525)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~m~~ 260 (525)
-+..+....++++|.+++++...
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35667777888888888776654
No 293
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=48.75 E-value=1.6e+02 Score=26.88 Aligned_cols=86 Identities=9% Similarity=-0.060 Sum_probs=48.8
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHh------hcCCChhH
Q 048766 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIK------LEGDSDYV 474 (525)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~p~~~~~ 474 (525)
.|....+..++.+| +.+++.+-..+++.. ....|+.... . ...+++++.+ ..|-....
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~-h------------~~~L~~~Ir~~~L~~i~~pYsrIs 318 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQA-H------------LGTLYDTMLEQNLCRIIEPYSRVQ 318 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHH-H------------HHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHH-H------------HHHHHHHHHHHHHHHHhHhhceee
Confidence 34444455555554 456777777776664 2223332111 0 1112222221 24666677
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 475 YVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
+..++..+.- ..+++...+.+|...|.-
T Consensus 319 l~~iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 319 VAHVAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 8888877765 678999999999887764
No 294
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=48.41 E-value=1.4e+02 Score=26.19 Aligned_cols=55 Identities=13% Similarity=0.041 Sum_probs=40.8
Q ss_pred CCCCch--hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 433 GFGSYG--VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 433 ~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
+..|.. .++...+....+.+++..|..+.+++++++|.. ...++|.+++....+.
T Consensus 200 ~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 200 KLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--------------PRAEQARKIKNKADSM 256 (325)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--------------HHHHHHHHHHHHHHTS
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhcC
Confidence 555553 355667778889999999999999999999842 2345677777776654
No 295
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=48.22 E-value=93 Score=24.05 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=37.3
Q ss_pred hccCChHHHHHHHHHh---CCCC--chhHHHHHHH----HH--hcCCChHHHHHHHHHHHhh
Q 048766 417 GQKGEVWRAQRMIREL---GFGS--YGVVWRALLS----AS--GACSDLDVARISAAEVIKL 467 (525)
Q Consensus 417 ~~~g~~~~A~~~~~~~---~~~~--~~~~~~~l~~----~~--~~~~~~~~A~~~~~~~~~~ 467 (525)
...|++-+|-+++++. ...+ ....|..|+. ++ .+.|+...|..++.+++..
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3459999999999987 2233 4455666665 22 4589999999999999873
No 296
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.80 E-value=1.2e+02 Score=24.79 Aligned_cols=56 Identities=7% Similarity=-0.037 Sum_probs=28.1
Q ss_pred HHHHhccCchhhhhHHHHHHHHhCCCchHHH--HHHHHHHHHccCCHHHHHHHHhcCC
Q 048766 10 LRASSDLGWDTYCQQLHCYILKSGFLSNVFV--STALMGFYRKINSLADAHKMFVEIP 65 (525)
Q Consensus 10 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~ 65 (525)
|...+..|+.+....+++.+.+.+..++... -...+...+..|+.+-+..+++.-.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 70 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 4445566777766666665555554332110 1122333445566666655555433
No 297
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.33 E-value=42 Score=31.84 Aligned_cols=67 Identities=16% Similarity=0.087 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHhCCCCc----h---hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY----G---VVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
...++.+++.|...+.+++|..+..+..++.. . ..+..++..+.-.+++.+|.+.+..++..-|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 45678888999999999999999998743321 1 1223456667778999999999999998877543
No 298
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=44.22 E-value=1.2e+02 Score=24.32 Aligned_cols=63 Identities=14% Similarity=0.202 Sum_probs=40.8
Q ss_pred HHHHHHHHH---hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccc-----hHHHHHHHHHHHHhCC
Q 048766 235 WNSILTGYV---NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA-----LTWGMLIHSCVIKQGL 298 (525)
Q Consensus 235 ~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 298 (525)
+-.+|+++. +..+++.|+-++-.|++.| .|....-..++.+....|. ...|...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 344455554 4678999999999999999 7776666777777666654 2333344444444453
No 299
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=43.31 E-value=63 Score=32.05 Aligned_cols=66 Identities=14% Similarity=-0.027 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhH
Q 048766 422 VWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 422 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
.+.|.++++.|+ ...............|++.-|.++...++..+|+|..+...++.+|.+.|.-.+
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 355666677664 223333345556688999999999999999999999999999999988875443
No 300
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.87 E-value=1.2e+02 Score=25.02 Aligned_cols=76 Identities=9% Similarity=0.069 Sum_probs=43.1
Q ss_pred HHHHHHhhhhh----CCCCChhHHHHHHHHHhccCChHHHHHHHHHh---CCCCc-hhHHHHHHHHHhcCCChHHHHHHH
Q 048766 390 SEYFESMTKDY----GIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL---GFGSY-GVVWRALLSASGACSDLDVARISA 461 (525)
Q Consensus 390 ~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~ 461 (525)
..++++..+.+ ....|+......+..--.+. ++..+|.-| ++.-. ...|......+-..|++.+|.++|
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~~---~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 173 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYID---EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVY 173 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTCS---CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHccC---CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444444432 33445544433333222233 444455544 43333 556667777777889999999999
Q ss_pred HHHHhhc
Q 048766 462 AEVIKLE 468 (525)
Q Consensus 462 ~~~~~~~ 468 (525)
+..++..
T Consensus 174 ~~Gi~~~ 180 (223)
T 4aez_C 174 QKGKRMK 180 (223)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 9888865
No 301
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.48 E-value=1.3e+02 Score=23.06 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=29.5
Q ss_pred HHHHHHHh---CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 425 AQRMIREL---GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 425 A~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
+..+|.-| ++.. -...|......+-..|++.+|.++|+..++.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 45555554 3322 24556667777777888888888888888765
No 302
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.27 E-value=80 Score=20.72 Aligned_cols=61 Identities=8% Similarity=0.160 Sum_probs=36.9
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHcccC-ChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCC
Q 048766 93 VELERSEIYADAYSFTSALAACGQLG-SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154 (525)
Q Consensus 93 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 154 (525)
+.+.+.|+.++..-. .++..+...+ ..-.+.++++.+.+.+...+..|..-.++.+...|-
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 345667777665543 4455555554 556677788887776555555565556666665553
No 303
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=39.25 E-value=3e+02 Score=27.27 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=15.8
Q ss_pred hhccChhHHHHHHHHHHHcCCccCC
Q 048766 483 TSHGNWDVASVMRNFMRERGLRKEA 507 (525)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~~~~~ 507 (525)
.+.|+|++|++.+++ .++-|..
T Consensus 549 ~~~g~~~~AL~~i~~---L~llPl~ 570 (661)
T 2qx5_A 549 YFNKQWQETLSQMEL---LDLLPFS 570 (661)
T ss_dssp HHTTCHHHHHHHHHH---TSCSCC-
T ss_pred HHcCCHHHHHHHHHh---CCCCCCC
Confidence 788999999877765 4455543
No 304
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=38.81 E-value=1.6e+02 Score=23.95 Aligned_cols=66 Identities=6% Similarity=0.065 Sum_probs=44.1
Q ss_pred ccHHHHHHHHH---hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccc-----hHHHHHHHHHHHHhCC
Q 048766 233 SSWNSILTGYV---NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA-----LTWGMLIHSCVIKQGL 298 (525)
Q Consensus 233 ~~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 298 (525)
..+..+|+++. +..+++.|+-++-.|++.|-.|....-..++.+....|. +..|...++.....|.
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34445566654 468899999999999999988887777777777766653 2334444444444453
No 305
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=36.75 E-value=30 Score=27.65 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=27.1
Q ss_pred cchHHHHHHHhhhhhCCCCCh-h-----HHHHHHHHHhccCChHHHHHHHHHh
Q 048766 386 FDKVSEYFESMTKDYGIKPTV-E-----HCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~-~-----~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
++.|+.+|+.+.+.. ++. . .--..+-.|.+.|.+++|.+++++.
T Consensus 94 LESAl~v~~~I~~e~---~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 94 LESALMIWGSIEKEH---DKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHHHHHTTSCSCC---CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 556666666665431 111 0 1112345678899999999999985
No 306
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.45 E-value=1.7e+02 Score=23.72 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=11.4
Q ss_pred HhcCChHHHHHHHHHHHhcCCC
Q 048766 80 VQSGKYRKALNLFVELERSEIY 101 (525)
Q Consensus 80 ~~~~~~~~A~~~~~~m~~~~~~ 101 (525)
+..|+.+....+++.+.+.|..
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHHHHHhcCCC
Confidence 4455655555555554444433
No 307
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=35.83 E-value=57 Score=22.60 Aligned_cols=38 Identities=11% Similarity=0.067 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHH
Q 048766 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353 (525)
Q Consensus 316 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 353 (525)
...+.|.++++.++..++.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46778888888888888888888888887666655443
No 308
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=34.99 E-value=77 Score=23.71 Aligned_cols=136 Identities=13% Similarity=0.040 Sum_probs=58.5
Q ss_pred HHHHccCCHHHHHHHHhcCC-C---CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH---hhHHHHHHHHcccC
Q 048766 46 GFYRKINSLADAHKMFVEIP-Q---PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADA---YSFTSALAACGQLG 118 (525)
Q Consensus 46 ~~~~~~~~~~~a~~~~~~~~-~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~ 118 (525)
...++.|+.+.+..+++... . .+..-++.+.. +..|+.+-+ +.+.+.|..++. ...+.+.. .+..|
T Consensus 7 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~--~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~ 79 (156)
T 1bd8_A 7 SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV--MMFGSTAIA----LELLKQGASPNVQDTSGTSPVHD-AARTG 79 (156)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH--SCTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHH-HHHTT
T ss_pred HHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH--HHcCCHHHH----HHHHHCCCCCCCcCCCCCCHHHH-HHHcC
Confidence 33455567777766666521 1 22222233322 445554433 333344443332 12222222 23345
Q ss_pred ChHHHHHHHHHHHHcccCCCc---chhhHHHHHHHhcCCHHHHHHHHhhccCC---ChhhHHHHHHHHHhCCChHHHHHH
Q 048766 119 SLQLGMAIHSKIVKYSLERGV---VIANCLIDMYGKCGSVEDAIGVFGEMIDK---DIISWNSVIAASARNGNLELAFGF 192 (525)
Q Consensus 119 ~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 192 (525)
+.+- .+.+.+.|..++. .-.+. +...+..|+.+-+.-+++. ... |....+. +...+..|+.+-+.-+
T Consensus 80 ~~~~----v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~-l~~A~~~~~~~~v~~L 152 (156)
T 1bd8_A 80 FLDT----LKVLVEHGADVNVPDGTGALP-IHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTP-LELALQRGAQDLVDIL 152 (156)
T ss_dssp CHHH----HHHHHHTTCCSCCCCTTSCCH-HHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCH-HHHHHHSCCHHHHHHH
T ss_pred cHHH----HHHHHHcCCCCCCcCCCCCcH-HHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCH-HHHHHHcCcHHHHHHH
Confidence 5543 3334445544332 22223 3334456776666666655 222 2222222 2333456666655555
Q ss_pred Hhc
Q 048766 193 LHR 195 (525)
Q Consensus 193 ~~~ 195 (525)
++.
T Consensus 153 l~~ 155 (156)
T 1bd8_A 153 QGH 155 (156)
T ss_dssp HTT
T ss_pred Hhh
Confidence 543
No 309
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=34.75 E-value=25 Score=21.78 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=18.6
Q ss_pred cCChhHHHHHHHHHhhCCCCCCCH
Q 048766 346 NGDLTKVIELFEQLKTVRDLQPDS 369 (525)
Q Consensus 346 ~~~~~~a~~~~~~~~~~~~~~p~~ 369 (525)
.-|++.|+..|.++...|.++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 458899999999988877566654
No 310
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.71 E-value=1.4e+02 Score=22.02 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=9.8
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 048766 238 ILTGYVNRNRVPEALHLFGEM 258 (525)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~m 258 (525)
++.-|...|+.++|...++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 344444444444444444444
No 311
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=33.56 E-value=1.9e+02 Score=23.26 Aligned_cols=46 Identities=4% Similarity=-0.019 Sum_probs=34.6
Q ss_pred HHHHHHH---hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccc
Q 048766 237 SILTGYV---NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282 (525)
Q Consensus 237 ~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 282 (525)
.+|+++. +..+++.|+-++-.|++.|-.|....-..++.+....|.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3445544 568899999999999999988877777777777666553
No 312
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=32.83 E-value=2.4e+02 Score=24.97 Aligned_cols=76 Identities=12% Similarity=-0.047 Sum_probs=35.4
Q ss_pred HHhCCChHHHHHHHhcCCC-----C---CcchHHHHHHHHHhcCChHHHHHHHhcCCCCC---cccHHHHHHHHHhcCCh
Q 048766 180 SARNGNLELAFGFLHRLPN-----P---DTISYNEVINGIAQFGDIEDAIMILSSMPSPN---SSSWNSILTGYVNRNRV 248 (525)
Q Consensus 180 ~~~~~~~~~a~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 248 (525)
.+..|+.+-+..+++.-.+ . +..-.+ .+...+..|+.+-+.-+++.-..++ ..-.+. +...+..|+.
T Consensus 180 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp-L~~A~~~g~~ 257 (364)
T 3ljn_A 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS-HLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVP-LYLSVRAAMV 257 (364)
T ss_dssp HHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC-TTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCH-HHHHHHTCCH
T ss_pred HHHcCCHHHHHHHHhcccccccccccccCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHhChH
Confidence 3455666666666654321 1 111111 2233446667666666665433322 222222 3334455666
Q ss_pred hHHHHHHHH
Q 048766 249 PEALHLFGE 257 (525)
Q Consensus 249 ~~a~~~~~~ 257 (525)
+-+.-+++.
T Consensus 258 ~~v~~Ll~~ 266 (364)
T 3ljn_A 258 LLTKELLQK 266 (364)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 665555554
No 313
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.35 E-value=86 Score=21.68 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=25.5
Q ss_pred CCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHH
Q 048766 153 GSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189 (525)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 189 (525)
...+.|.++++.+..++..+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3567777777777777777777777777665655544
No 314
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=31.65 E-value=3e+02 Score=25.09 Aligned_cols=345 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHH--HHHHHHHhcCCh
Q 048766 8 HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWN--SLISGYVQSGKY 85 (525)
Q Consensus 8 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ll~~~~~~~~~ 85 (525)
+.|...+..|+.+-+..+++. ...+..........+...++.|+.+-+..+++.-...+..... +.+...+..|+.
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~ 93 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHT 93 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT--TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred CHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCH
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhc
Q 048766 86 RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165 (525)
Q Consensus 86 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 165 (525)
+-+.-+++. ...+......-...+...+..|+.+.+..+++. ..........-.+.+...+..|+.+-+..+++.-
T Consensus 94 ~~v~~Ll~~--ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 169 (437)
T 1n11_A 94 NMVKLLLEN--NANPNLATTAGHTPLHIAAREGHVETVLALLEK--EASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169 (437)
T ss_dssp HHHHHHHHH--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHhC--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q ss_pred cCCChh--hHHHHHHHHHhCCChHHHHHHHhcC--CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHH--HHH
Q 048766 166 IDKDII--SWNSVIAASARNGNLELAFGFLHRL--PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWN--SIL 239 (525)
Q Consensus 166 ~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~l~ 239 (525)
..++.. .-.+.+...+..|+.+-+.-+++.- .......-.+.+...+..|+.+-+..+++.-..++..... +.+
T Consensus 170 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L 249 (437)
T 1n11_A 170 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL 249 (437)
T ss_dssp CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHH
Q 048766 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319 (525)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 319 (525)
...+..|+.+-+.-+++. ...+......-...+...+..|..+-+..+++. ...+......-...+...+..|+.+
T Consensus 250 ~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~ 325 (437)
T 1n11_A 250 HLAAQEGHAEMVALLLSK--QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH--GVMVDATTRMGYTPLHVASHYGNIK 325 (437)
T ss_dssp HHHHHTTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCSSCCCHHHHHHHSSCSH
T ss_pred HHHHHCCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CccCCCCCCCCCCHHHHHHHcCcHH
Q ss_pred HHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC
Q 048766 320 IADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD 368 (525)
Q Consensus 320 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 368 (525)
-+.-+++.-. ..+..-++.|..+..... .++.+.+.+.| ..|+
T Consensus 326 ~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~-----~~iv~~Ll~~g-a~~~ 371 (437)
T 1n11_A 326 LVKFLLQHQADVNAKTKLGYSPLHQAAQQGH-----TDIVTLLLKNG-ASPN 371 (437)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTT-CCSC
T ss_pred HHHHHHhcCCCCCCCCCCCCCHHHHHHHCCh-----HHHHHHHHHCc-CCCC
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.29 E-value=4.7e+02 Score=27.28 Aligned_cols=128 Identities=7% Similarity=-0.022 Sum_probs=71.7
Q ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHH
Q 048766 175 SVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS---PNSSSWNSILTGYVNRNRVPEA 251 (525)
Q Consensus 175 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 251 (525)
.++..+...|.++-+.++....+. ++..--.+..+|...|++++|...|++... .+...... ....
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~----------~~~~ 883 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV----------LREF 883 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGG----------GHHH
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccc----------hhhh
Confidence 366777788888888776666654 333334577888889999999999987752 11111000 0111
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchH----HHHHHHHHHHHcC
Q 048766 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI----VVASALLDMYSKC 315 (525)
Q Consensus 252 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 315 (525)
..++..... ......-|..++..+.+.+.++.+.++-+.+++.--+.+. ..+..+.++.+..
T Consensus 884 ~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 884 QEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 112211111 0112236667777777777777777777777654322222 3455555555543
No 316
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=31.23 E-value=2.1e+02 Score=23.08 Aligned_cols=15 Identities=0% Similarity=0.051 Sum_probs=7.4
Q ss_pred HccCCHHHHHHHHhc
Q 048766 49 RKINSLADAHKMFVE 63 (525)
Q Consensus 49 ~~~~~~~~a~~~~~~ 63 (525)
++.|+.+.+..+++.
T Consensus 17 ~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 17 TQYGIYERCRELVEA 31 (240)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHc
Confidence 344555555555543
No 317
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=30.67 E-value=4.1e+02 Score=26.30 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=23.2
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHh
Q 048766 43 ALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQ 81 (525)
Q Consensus 43 ~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~ 81 (525)
.++-.|.|+|.+++|.++.++... .-...+-..+..++.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 356667788888888888877653 112355556666653
No 318
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.17 E-value=1.4e+02 Score=22.44 Aligned_cols=59 Identities=8% Similarity=-0.018 Sum_probs=28.7
Q ss_pred HHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCC
Q 048766 95 LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154 (525)
Q Consensus 95 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 154 (525)
+.+.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..|..--++.+...|-
T Consensus 13 l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 44555555543322 233333344455566666666555444444444444555555553
No 319
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.89 E-value=1.5e+02 Score=21.99 Aligned_cols=59 Identities=8% Similarity=0.120 Sum_probs=36.1
Q ss_pred HHHhcCCCCCHhhHHHHHHHHcccC-ChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcC
Q 048766 94 ELERSEIYADAYSFTSALAACGQLG-SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153 (525)
Q Consensus 94 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 153 (525)
.+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 456677777665443 344454555 66778888888887765555555555555555555
No 320
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.79 E-value=1.8e+02 Score=22.09 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=11.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 048766 237 SILTGYVNRNRVPEALHLFGEM 258 (525)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~m 258 (525)
.++.-|...|+.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444445555555555555554
No 321
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.42 E-value=87 Score=23.64 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=34.6
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcC
Q 048766 93 VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153 (525)
Q Consensus 93 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 153 (525)
+.+.+.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 8 ~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 345566777665533 2334444445 5678888888877765555555444555555555
No 322
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=28.37 E-value=1.2e+02 Score=19.63 Aligned_cols=26 Identities=19% Similarity=0.045 Sum_probs=20.0
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 444 LLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 444 l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
++..+...|++++|...|-+++..-|
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~ 48 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCG 48 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 55667777888888888888888776
No 323
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.35 E-value=2.3e+02 Score=22.77 Aligned_cols=61 Identities=13% Similarity=0.137 Sum_probs=38.5
Q ss_pred HHHHH---HhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCC-----hHHHHHHHHHHHHcccC
Q 048766 75 LISGY---VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS-----LQLGMAIHSKIVKYSLE 136 (525)
Q Consensus 75 ll~~~---~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 136 (525)
+|+++ ++..+++.|+-.+.+|.+.| .|.-..-..++-+.-..|. ...|...++.....|.+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 44554 45689999999999999999 6655544555555544443 23344555555666643
No 324
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=28.34 E-value=80 Score=26.39 Aligned_cols=25 Identities=16% Similarity=-0.007 Sum_probs=15.6
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCC
Q 048766 79 YVQSGKYRKALNLFVELERSEIYAD 103 (525)
Q Consensus 79 ~~~~~~~~~A~~~~~~m~~~~~~p~ 103 (525)
.++.|+.+....+++.+.+.|..++
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3456777776666666666655544
No 325
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.18 E-value=1.5e+02 Score=22.38 Aligned_cols=61 Identities=11% Similarity=0.142 Sum_probs=39.7
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHcccC-ChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCC
Q 048766 93 VELERSEIYADAYSFTSALAACGQLG-SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154 (525)
Q Consensus 93 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 154 (525)
+.+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|..--++.+...|-
T Consensus 6 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 6 QALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 4466778777765443 445555555 677888899888887655566555555666666664
No 326
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.13 E-value=96 Score=23.16 Aligned_cols=47 Identities=11% Similarity=0.003 Sum_probs=31.3
Q ss_pred HHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCH
Q 048766 8 HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSL 54 (525)
Q Consensus 8 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 54 (525)
.+|..+...+..-.|.++++.+.+.+...+..|.-.-|..+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 45666666666777888888877776556666666666666666643
No 327
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=27.96 E-value=3e+02 Score=24.70 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=36.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcCCCCCc----ccHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCCH
Q 048766 40 VSTALMGFYRKINSLADAHKMFVEIPQPSV----VSWNSLISGYVQSGK--YRKALNLFVELERSEIYADA 104 (525)
Q Consensus 40 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~ll~~~~~~~~--~~~A~~~~~~m~~~~~~p~~ 104 (525)
....++.-|...|++++|.+.++++..|+. ..+..+..++ ..++ .+.+..++..+...|+-+..
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aL-er~~~~re~~~~LL~~L~~~~~ls~~ 83 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSL-DRSDEDKEKASSLISLLKQEGIATSD 83 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 345677778888888888888888776642 1222233333 3322 24455666666665544333
No 328
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.33 E-value=98 Score=22.77 Aligned_cols=46 Identities=11% Similarity=-0.078 Sum_probs=32.5
Q ss_pred HHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCC
Q 048766 8 HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINS 53 (525)
Q Consensus 8 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 53 (525)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4566666666777888888888877666666666667777777664
No 329
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.17 E-value=2.2e+02 Score=21.70 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCcc---cHHHHHHHHHhcCC--hhHHHHHHHHHhhCCCCCCHH
Q 048766 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSS---SWNSILTGYVNRNR--VPEALHLFGEMQSKDVPMDEY 268 (525)
Q Consensus 204 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~ 268 (525)
...++.-|...|+.++|.+.++++..|.-. ....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 445677777778888888888777644221 22333344444322 455777787777776554443
No 330
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=25.88 E-value=1.1e+02 Score=20.98 Aligned_cols=24 Identities=8% Similarity=-0.146 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHH
Q 048766 441 WRALLSASGACSDLDVARISAAEV 464 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~ 464 (525)
+......+.+.|+|++|+++.+++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 334456666777777777775543
No 331
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.85 E-value=1.4e+02 Score=19.44 Aligned_cols=59 Identities=8% Similarity=0.145 Sum_probs=34.1
Q ss_pred HHhhCCCCCCHHHHHHHHHHhcccc-chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 048766 257 EMQSKDVPMDEYTFSTMLSGIAGLS-ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316 (525)
Q Consensus 257 ~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (525)
.+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..+....+..+.+.|
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 35566777766543 3445555443 45567777777776655555555555555555544
No 332
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.11 E-value=2.2e+02 Score=21.33 Aligned_cols=14 Identities=7% Similarity=0.240 Sum_probs=5.9
Q ss_pred ChhHHHHHHHHHhh
Q 048766 348 DLTKVIELFEQLKT 361 (525)
Q Consensus 348 ~~~~a~~~~~~~~~ 361 (525)
..-.|.++++.+.+
T Consensus 36 ~~~sa~ei~~~l~~ 49 (145)
T 2fe3_A 36 AHPTADDIYKALEG 49 (145)
T ss_dssp SCCCHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHH
Confidence 33344444444444
No 333
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=24.54 E-value=3.2e+02 Score=23.10 Aligned_cols=228 Identities=9% Similarity=0.023 Sum_probs=0.0
Q ss_pred HccCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHH
Q 048766 49 RKINSLADAHKMFVEIPQ--PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI 126 (525)
Q Consensus 49 ~~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 126 (525)
.+..+..+..+++..-.- .|..-++.|..+..... .++++.+.+.|..++...-...+...+..|+.+-+..+
T Consensus 7 i~~~~~~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 7 INTWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNN-----VRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp GGGCCHHHHHHHHHSTTTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHH
T ss_pred HHhcCHHHHHHHHHhCCCCccCCCCCCHHHHHHHcCC-----HHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q ss_pred HHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhH---HHHHHHHHhCCChHHHHHHHhcCCCCCcc-
Q 048766 127 HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISW---NSVIAASARNGNLELAFGFLHRLPNPDTI- 202 (525)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 202 (525)
++. ...+......-.+.+...+..|+.+-+..+++.-...+.... .+.+...+..|+.+-+.-+++.-.+....
T Consensus 82 l~~--ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 159 (285)
T 3kea_A 82 LFS--GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA 159 (285)
T ss_dssp HHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCS
T ss_pred HHC--CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccc
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcc
Q 048766 203 SYNEVINGIAQFGDIEDAIMILSSMP---SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279 (525)
Q Consensus 203 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 279 (525)
.-.+.+...+..|+.+-+.-+++.-. ..+..-++..+...+..|+ .++.+.+.+.|..++... ..-..
T Consensus 160 ~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~----~~~v~~Ll~~gad~~~~~-----~~a~~ 230 (285)
T 3kea_A 160 ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD----IEMLQALFKYDINIYSAN-----LENVL 230 (285)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTC----HHHHHHHTTSCBCSTTTT-----GGGGT
T ss_pred CCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCCCCC-----hhhhh
Q ss_pred ccchHHHHHHHHH
Q 048766 280 LSALTWGMLIHSC 292 (525)
Q Consensus 280 ~~~~~~a~~~~~~ 292 (525)
.|+.+-+..+++.
T Consensus 231 ~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 231 LDDAEIAKMIIEK 243 (285)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
No 334
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.49 E-value=4.4e+02 Score=24.67 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=35.6
Q ss_pred HhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 048766 295 KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR---KNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363 (525)
Q Consensus 295 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 363 (525)
+.|++--...|..-.+.+...|++++|.++-...++ ++..|.+.+-..=...|+..-.+.+|..+.+.|
T Consensus 354 R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 354 RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 334444444455555566667777777766655542 233344333332223445555555566555555
No 335
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.24 E-value=3e+02 Score=22.63 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=29.2
Q ss_pred chHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHH
Q 048766 387 DKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIRE 431 (525)
Q Consensus 387 ~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (525)
+....+|..|... ||--. ...|...+..+...|++.+|.++|+.
T Consensus 131 ~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 175 (223)
T 4aez_C 131 DEPVELFSFLAHH-HIGQESSIFYEEYANYFESRGLFQKADEVYQK 175 (223)
T ss_dssp SCHHHHHHHHHHT-TCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHC-CcchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566677777655 55443 45566677777777777777777765
No 336
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.23 E-value=1.8e+02 Score=22.33 Aligned_cols=68 Identities=10% Similarity=0.050 Sum_probs=44.4
Q ss_pred HHHHHHHH-HHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHc--ccCCCcchhhHHHHHHHhcCC
Q 048766 86 RKALNLFV-ELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY--SLERGVVIANCLIDMYGKCGS 154 (525)
Q Consensus 86 ~~A~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 154 (525)
+.+++-+. .+.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 44444444 3456788776653 44566666677788899999998887 656666555555666666663
No 337
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.22 E-value=62 Score=19.97 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 048766 86 RKALNLFVELERSEIYADAYSFTSALAAC 114 (525)
Q Consensus 86 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 114 (525)
++|.+.|.+|++..-.+..-||...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56666777666544344556677666666
No 338
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.94 E-value=2e+02 Score=21.78 Aligned_cols=59 Identities=7% Similarity=0.032 Sum_probs=27.7
Q ss_pred HHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCC
Q 048766 95 LERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154 (525)
Q Consensus 95 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 154 (525)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|..--++.+...|-
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 4445555443322 2333333444455566666666555544444444444555555553
No 339
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.92 E-value=1.2e+02 Score=22.26 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=20.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHccc
Q 048766 75 LISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117 (525)
Q Consensus 75 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 117 (525)
++..+...+..-.|.++++.+.+.+...+..|....+..+...
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 58 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASS 58 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 4444444445555666666665554444444444444444333
No 340
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=23.65 E-value=2.7e+02 Score=25.51 Aligned_cols=89 Identities=8% Similarity=0.069 Sum_probs=0.0
Q ss_pred cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
+.+|+..-+..-. +..+.-|..++..|.|.+++.+|+..+-+ .......-+-..+-+++|++.+
T Consensus 302 ~~~AI~sa~~~Y~----n~HvYPYtYlgGy~yR~~~~reAl~~WA~------------Aa~Vi~~YNY~reDeEIYKEf~ 365 (550)
T 3u84_A 302 YHKGIASAKTYYR----DEHIYPYMYLAGYHCRNRNVREALQAWAD------------TATVIQDYNYCREDEEIYKEFF 365 (550)
T ss_dssp HHHHHHHHHHHST----TCCSHHHHHHHHHHHHTTCHHHHHHHHHH------------HHHHHTTSCCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhc----cCCccceeecchhhhhcchHHHHHHHHHH------------HHHHHHHcCCCcchHHHHHHHH
Q ss_pred hhc----C-------------------------------CChhHHHHHHHHHhhccChhH
Q 048766 466 KLE----G-------------------------------DSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 466 ~~~----p-------------------------------~~~~~~~~l~~~~~~~g~~~~ 490 (525)
++. | .||..+..|++.|-.-..|+|
T Consensus 366 eIAneliP~~~k~~a~~~~~G~~~~~~~~~~~~~~~siL~Dp~cfA~LLrFYDgIC~WEE 425 (550)
T 3u84_A 366 EVANDVIPNLLKEAASLLEAGEERPGEQSQGTQSQGSALQDPECFAHLLRFYDGICKWEE 425 (550)
T ss_dssp HHHHTHHHHHHHHHHHHHHTC---------------CGGGCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhHHHHHhhhhccccccccccccccchhHHHHhcChHHHHHHHHHhhcceeccc
No 341
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=23.52 E-value=3.8e+02 Score=23.53 Aligned_cols=56 Identities=11% Similarity=0.010 Sum_probs=40.8
Q ss_pred CCCCch--hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 433 GFGSYG--VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 433 ~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
+..|.+ .++...+....+.+++..|-.+.++++++.|. +. ..++|.+++....+.+
T Consensus 191 ~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~-~~-------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 191 NLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK-PE-------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC-HH-------------HHHHHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-HH-------------HHHHHHHHHHHHhcCC
Confidence 455554 34566677788999999999999999999883 22 3445777777776653
No 342
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=23.33 E-value=3.8e+02 Score=23.50 Aligned_cols=103 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHh----cCCHHHHHHHHhh-
Q 048766 90 NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGK----CGSVEDAIGVFGE- 164 (525)
Q Consensus 90 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~- 164 (525)
++++.+.+.|+.|...++.-++..+.+.=.++.+..+++.+...|...-..+..+++..+.. ..++++....+..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q ss_pred ccCCChhhHHHHHHHHHhCCChHHHHHH
Q 048766 165 MIDKDIISWNSVIAASARNGNLELAFGF 192 (525)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 192 (525)
....+......++.-........+..++
T Consensus 289 ~p~~~~~di~~li~~A~~l~~s~~l~~~ 316 (331)
T 3qye_A 289 LPNLGLVQMEKTINQVFEMDIAKQLQAY 316 (331)
T ss_dssp TTCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCchHHHHHH
No 343
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.20 E-value=1.3e+02 Score=22.87 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=34.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCC----CCCcccHHHHHHHHHhcCCh
Q 048766 26 HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP----QPSVVSWNSLISGYVQSGKY 85 (525)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~ 85 (525)
-+.+.+.|+.+++.- ..++..+...++.-.|.++++.+. ..+..|--..+..+...|-.
T Consensus 15 ~~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 15 RMSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 344556776666543 446666666666667777777663 34455555566677776654
No 344
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=23.17 E-value=4.9e+02 Score=24.79 Aligned_cols=67 Identities=6% Similarity=-0.081 Sum_probs=36.2
Q ss_pred CCchhHHHHHHHHHhcCCChHHHHH----HHHHHH-hhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 435 GSYGVVWRALLSASGACSDLDVARI----SAAEVI-KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 435 ~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.+|......+..-+...|..++-++ .++.-+ +..|++......|...|.+.|++-+|.+++..+-..
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 3444444455555555555444322 111111 123555556666777778888888888888777665
No 345
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.79 E-value=1.3e+02 Score=22.24 Aligned_cols=54 Identities=7% Similarity=0.209 Sum_probs=23.2
Q ss_pred HHHhCCCchHHHHHHHHHHHHccC-CHHHHHHHHhcCC----CCCcccHHHHHHHHHhcC
Q 048766 29 ILKSGFLSNVFVSTALMGFYRKIN-SLADAHKMFVEIP----QPSVVSWNSLISGYVQSG 83 (525)
Q Consensus 29 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~ 83 (525)
+.+.|+..++.- ..++..+...+ +.-.|.++++.+. ..+..+--..+..+...|
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 344555444432 23444444444 4444555555442 223333334444444444
No 346
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.67 E-value=2.5e+02 Score=21.17 Aligned_cols=61 Identities=8% Similarity=0.124 Sum_probs=36.4
Q ss_pred HHHhhCCCCCCHHHHHHHHHHhcccc-chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCC
Q 048766 256 GEMQSKDVPMDEYTFSTMLSGIAGLS-ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317 (525)
Q Consensus 256 ~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 317 (525)
+.+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..+...-++.+...|-
T Consensus 6 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 6 QALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3456677777765443 344444444 566788888888777655555554445555555443
No 347
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=22.48 E-value=3.1e+02 Score=22.24 Aligned_cols=64 Identities=9% Similarity=0.154 Sum_probs=40.6
Q ss_pred HHHHHHH---HhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCC-----hHHHHHHHHHHHHcccC
Q 048766 73 NSLISGY---VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS-----LQLGMAIHSKIVKYSLE 136 (525)
Q Consensus 73 ~~ll~~~---~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 136 (525)
--+|+++ ++..+++.|+-.+.+|.+.|-.|.-..-..++-+.-..|. ...|...++.....|.+
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3455555 4568999999999999998876665555555555444432 23455555555666643
No 348
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.39 E-value=1.7e+02 Score=22.61 Aligned_cols=48 Identities=10% Similarity=0.165 Sum_probs=28.1
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCHhhHHHHHHHHcccC
Q 048766 71 SWNSLISGYVQSGKYRKALNLFVELERS--EIYADAYSFTSALAACGQLG 118 (525)
Q Consensus 71 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~ 118 (525)
.-..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|
T Consensus 34 qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 34 QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3445566666666666777777777765 54455555444445554444
No 349
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.11 E-value=3.9e+02 Score=25.26 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=48.4
Q ss_pred HHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHh
Q 048766 378 ACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASG 449 (525)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~ 449 (525)
....... ++.|..+|..+... .| +...|+.|+-.....|+.-+|.-.|-+. ...|-+.+...+...+.
T Consensus 161 L~RY~~~-~~~A~~~Y~~A~~~---~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 161 IARYRNQ-TSQAESYYRHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHh---CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 3344455 88999999988753 45 5678888888888888888887776654 44566667766666554
No 350
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.69 E-value=2.1e+02 Score=22.26 Aligned_cols=77 Identities=5% Similarity=-0.046 Sum_probs=39.3
Q ss_pred HHHhccCchhhhhHHHHHHHHhCCCc---hHHHHHHHHHHHHccCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhcCC
Q 048766 11 RASSDLGWDTYCQQLHCYILKSGFLS---NVFVSTALMGFYRKINSLADAHKMFVEIPQPS---VVSWNSLISGYVQSGK 84 (525)
Q Consensus 11 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~ 84 (525)
...+..|+.+....++..- +..+ +..-. ..+...++.|+.+-+..+++.-..++ ...++.+.. .+..|+
T Consensus 10 ~~A~~~g~~~~v~~ll~~~---~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~-A~~~~~ 84 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDT---TYQVDEVDTEGN-TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLY-AGAQGR 84 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCT---TCCTTCCCTTSC-CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTC
T ss_pred HHHHHhccHHHHHHHHHcC---CCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH-HHHcCC
Confidence 3344667777666655422 1111 11112 23444556788888888887654432 223333333 345667
Q ss_pred hHHHHHHH
Q 048766 85 YRKALNLF 92 (525)
Q Consensus 85 ~~~A~~~~ 92 (525)
.+-+..++
T Consensus 85 ~~~~~~Ll 92 (201)
T 3hra_A 85 TEILAYML 92 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65554444
No 351
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.54 E-value=2.8e+02 Score=21.37 Aligned_cols=54 Identities=4% Similarity=-0.176 Sum_probs=40.9
Q ss_pred HhcCCChHHHHHHHHHHHhhcCCC---hhHHHHHHH------HHhhccChhHHHHHHHHHHHc
Q 048766 448 SGACSDLDVARISAAEVIKLEGDS---DYVYVMLCN------LYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 448 ~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~~ 501 (525)
+...|++=+|-++++.+....|.. ...+..|+. .+.+.|++.-|..++.+....
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445599999999999999876533 344555555 356689999999999988763
No 352
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.49 E-value=2e+02 Score=19.50 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhH
Q 048766 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK 351 (525)
Q Consensus 315 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (525)
....++|..+++.+...+..+|..+..++...+...-
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 5677888888888888888888888888877665433
No 353
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=21.25 E-value=3.5e+02 Score=22.37 Aligned_cols=144 Identities=14% Similarity=0.046 Sum_probs=72.3
Q ss_pred HHHHHHHhccCchhhhhHHHHHHHHhCCCchHH---HHHHHHHHHHccCCHHHHHHHHhcCCCCC---cccHHHHHHHHH
Q 048766 7 FHLLRASSDLGWDTYCQQLHCYILKSGFLSNVF---VSTALMGFYRKINSLADAHKMFVEIPQPS---VVSWNSLISGYV 80 (525)
Q Consensus 7 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~~~~ 80 (525)
++.|...++.|+++....+ ++.|..++.. .-...+...+..|+.+-+..+++.-..++ ..-.+.+.. .+
T Consensus 6 ~~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~ 80 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLL-AA 80 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH-HH
T ss_pred chHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHH-HH
Confidence 3456666778887655544 4455443321 11234555567788888888877654432 222333333 33
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHh---hHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcch------------hhHH
Q 048766 81 QSGKYRKALNLFVELERSEIYADAY---SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVI------------ANCL 145 (525)
Q Consensus 81 ~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------~~~l 145 (525)
..|+.+ +++.+.+.|..++.. .++.+. ..+..|+.+ +++.+.+.|..++... -...
T Consensus 81 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~ 151 (285)
T 1wdy_A 81 IAGSVK----LLKLFLSKGADVNECDFYGFTAFM-EAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATA 151 (285)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCBCTTCCBHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCH
T ss_pred HcCCHH----HHHHHHHcCCCCCccCcccCCHHH-HHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcH
Confidence 455544 444555556554422 222232 333455544 4445555555443221 1123
Q ss_pred HHHHHhcCCHHHHHHHHhh
Q 048766 146 IDMYGKCGSVEDAIGVFGE 164 (525)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~ 164 (525)
+...+..|+.+-+..+++.
T Consensus 152 L~~A~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDE 170 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3344556777666666654
No 354
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.89 E-value=1.7e+02 Score=18.60 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048766 422 VWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463 (525)
Q Consensus 422 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 463 (525)
++..+..+..|++........+|..+ .|+++.|++.+-.
T Consensus 19 y~~ql~qL~~MGF~d~~an~~AL~at---~Gnve~Ave~L~~ 57 (67)
T 2dna_A 19 FSKEMECLQAMGFVNYNANLQALIAT---DGDTNAAIYKLKS 57 (67)
T ss_dssp THHHHHHHHHHTCCCHHHHHHHHHHT---TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHc---CCCHHHHHHHHHh
Confidence 34455556666654433333333322 3677777666543
No 355
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.43 E-value=1.1e+02 Score=22.80 Aligned_cols=34 Identities=9% Similarity=0.161 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcC
Q 048766 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG 153 (525)
Q Consensus 120 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 153 (525)
.-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 29 h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 29 FRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444443333333333333333333333
No 356
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=20.40 E-value=2.6e+02 Score=20.48 Aligned_cols=66 Identities=14% Similarity=0.162 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCcc---cHHHHHHHHHhcCC--hhHHHHHHHHHhhCCCCCCHHH
Q 048766 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSS---SWNSILTGYVNRNR--VPEALHLFGEMQSKDVPMDEYT 269 (525)
Q Consensus 204 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~ 269 (525)
...++.-|...|+.++|.+.++++..|.-. ....+..++-+.+. .+.+..++..+...|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 345677777778888888888877654221 22333344444432 3567788888877765544433
No 357
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.28 E-value=4.4e+02 Score=23.91 Aligned_cols=120 Identities=8% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHH-HHHHHhccCChHHHHHHHHHh--CC-----------------
Q 048766 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS-MIRLMGQKGEVWRAQRMIREL--GF----------------- 434 (525)
Q Consensus 375 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~--~~----------------- 434 (525)
+...+..... .+...++|+.....+.-+.++-.+.. ++.......+.++|.++++++ ..
T Consensus 45 L~~~~~~~~~-~~~~~~ly~~fi~~f~~kin~L~lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ 123 (393)
T 4b4t_O 45 LTKFFDDAKS-TPLRLRLYDNFVSKFYDKINQLSVVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHG 123 (393)
T ss_dssp THHHHCCCSS-CCCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSC
T ss_pred HHHHHhChhc-chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhh
Q ss_pred CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------CCChhHHHHHHHHHhhccChhHHHHHH
Q 048766 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLE--------GDSDYVYVMLCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 435 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (525)
.+.......+...+...|+.++|...++++...- .-+...|...+..|...+++.++....
T Consensus 124 ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~ 192 (393)
T 4b4t_O 124 DGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTS 192 (393)
T ss_dssp CSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Done!