BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048767
         (1041 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GHG|A Chain A, Crystal Structure Of Human Fibrinogen
 pdb|3GHG|D Chain D, Crystal Structure Of Human Fibrinogen
 pdb|3GHG|G Chain G, Crystal Structure Of Human Fibrinogen
 pdb|3GHG|J Chain J, Crystal Structure Of Human Fibrinogen
          Length = 562

 Score = 29.6 bits (65), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)

Query: 56 GLADDV-ESLAEKVSKLENELFEYQYN 81
          GL D+V +    +++KL+N LFEYQ N
Sbjct: 53 GLIDEVNQDFTNRINKLKNSLFEYQKN 79


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.307    0.125    0.328 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,922,445
Number of Sequences: 62578
Number of extensions: 1006108
Number of successful extensions: 3764
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 3383
Number of HSP's gapped (non-prelim): 394
length of query: 1041
length of database: 14,973,337
effective HSP length: 109
effective length of query: 932
effective length of database: 8,152,335
effective search space: 7597976220
effective search space used: 7597976220
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)