BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048767
(1041 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein
OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1
Length = 1042
Score = 266 bits (681), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 268/904 (29%), Positives = 462/904 (51%), Gaps = 61/904 (6%)
Query: 2 FTPQRKALSGWSLTPRGEKNGTGSVSNPTTVDGLTGKGKSIVAFTEPRTPQNGVGLADDV 61
TP A + ++TP + + +P T + + + K F E D
Sbjct: 12 ITPSTAATNRLTITP-----NSRVLKSPLTEEIMWKRLKD-AGFDEQSIKNR------DK 59
Query: 62 ESLAEKVSKLENELFEYQYNMGLLLIEKKEWSSKYEELKQTFAEAKDALKREQAAHLIAI 121
+L ++KLE+E+++YQ+NMGLLL+EK E SS+YEE+K + E+ RE++A++ A+
Sbjct: 60 AALIAYIAKLESEVYDYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSAL 119
Query: 122 TDVEKREENLRKALGVEKQCVLDLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKS 181
+ +KREE+L+K +G+ K+C+ LEK L EMR+E AE K +A S ++EA+ ++ +K
Sbjct: 120 AEAKKREESLKKDVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKL 179
Query: 182 LEVEVKLRSVDAKVAEINRKSSEIERKSHELESRESALRMERASFIAEREAYEGTFSQQR 241
+ E K+R+ +A AE NR ERK E+ESRE L ASF +E E E +R
Sbjct: 180 ADAEAKMRAAEALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIER 239
Query: 242 EDLREWERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLM 301
+ L E + LQ ERL+ Q +NQRE+ + + + EK L+ A+ + +
Sbjct: 240 QTLNERRKSLQQEHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFE 299
Query: 302 RKEDDINKRLANLITKEKE---------------YDAARK-------------SLEMKEE 333
K+ ++ LA L K +E Y +++K SL KE+
Sbjct: 300 DKKSNLEIALA-LCAKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQ 358
Query: 334 ELRQLEEKLNAREKVEVEKLLDEHKASLDAKQREFDLEIDQKRKAFDDDLKSKVVEVEKK 393
EL EEK+ ++E ++ +L + L ++ + + E++ K K+ + +++SK E +
Sbjct: 359 ELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELR 418
Query: 394 EAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQL 453
E +I +E+ + ++E LE + +KEKD+ K +L+ +EK + + E+++ + L
Sbjct: 419 EVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTML 478
Query: 454 LADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCR 513
+KE + EL++ + E + ++ +L + E +E L+ +LKE++ R
Sbjct: 479 EDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLR 538
Query: 514 LQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEERIK 573
Q+ +L EA+ LK +K FE EWE +D KR E+ KE + I+ Q E E + IK
Sbjct: 539 AQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIK 598
Query: 574 RDKQLAEDHIKREWEALEVAKESFKATMDHEQSMITEKAESERRQLLHDFELQKRKLESD 633
++ + K + E+L +E F M E S K + ER L E+QKR+LE
Sbjct: 599 EERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYC 658
Query: 634 MQNRQEELEKDLKEKERLFEEEKERELSNINYLRDIARKEMEEMKLERLKLEKEKQEVDS 693
++N++EELE +++E+ FE+EK+ E I L+++A KE+E +++E +L+ E+ E+
Sbjct: 659 IENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKL 718
Query: 694 HRKHLEGEQVGIRKDIDMLVGLTKMLKEQREQIVKERDRFLNFVEKQKKCEHCAEITSEF 753
R+ E E ++ ++ L + L+ QR + ERD + +E+ KK E+ +
Sbjct: 719 DRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDM 778
Query: 754 VL---------------SDLVQEIV-KSEVPPLPRVANDYVNEKKNSEMSPDVLASGSPA 797
+ S L Q++V + + L + N + S + +P+
Sbjct: 779 SMAKMQLSNLERSWEKVSALKQKVVSRDDELDLQNGVSTVSNSEDGYNSSMERQNGLTPS 838
Query: 798 SAGTISWLRKCTSKIFKLSPSKKDENTVVRELTEETPSSGGQTKLQESSRRLGQTNEPDL 857
SA SW+++CT+ IFK SP K +T++ EE + KL ESSRR + L
Sbjct: 839 SATPFSWIKRCTNLIFKTSPEK---STLMHHYEEEGGVPSEKLKL-ESSRREEKAYTEGL 894
Query: 858 SFAI 861
S A+
Sbjct: 895 SIAV 898
>sp|Q62209|SYCP1_MOUSE Synaptonemal complex protein 1 OS=Mus musculus GN=Sycp1 PE=1 SV=2
Length = 993
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 139/270 (51%), Gaps = 44/270 (16%)
Query: 506 KEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWE----QLDEKRAEVEKELKKISEQTEKL 561
+E I C+ QEE LLK+ E+L++++ + E E + ++ EV+ +L K E +
Sbjct: 542 QEDIINCKKQEERLLKQIENLEEKEMHLRDELESVRKEFIQQGDEVKCKLDKSEENARSI 601
Query: 562 EKEKLSEEERIKRDKQLAEDHIKREWEALEVAKESFKATMDHEQSMITEKAESERRQLLH 621
E E L +E+++K + +++K++ E K + E + +K+ +E +Q L+
Sbjct: 602 ECEVLKKEKQMKILESKC-NNLKKQVE----NKSKNIEELHQENKTLKKKSSAEIKQ-LN 655
Query: 622 DFELQKRKLESDMQNRQEELEKDLKEKERLFEEEKERELSNINYLRDIARKEMEEMKLER 681
+E++ KLE ++++ ++ E E++N NY ++I K++ E KL
Sbjct: 656 AYEIKVSKLELELESTKQRFE----------------EMTN-NYQKEIENKKISEGKLLG 698
Query: 682 LKLEKEKQEVDSHRKHLEGEQVGIRKDIDM--------LVGLTKMLKEQREQIVKERDRF 733
++EK K VD E V ++K+ID+ +V L + K Q ++IV+ERD
Sbjct: 699 -EVEKAKATVD--------EAVKLQKEIDLRCQHKIAEMVALMEKHKHQYDKIVEERDSE 749
Query: 734 LNFVEKQKKCEHCAEITSEFVLSDLVQEIV 763
L + +++ + A+I E LS++ E+V
Sbjct: 750 LGLYKNREQEQSSAKIALETELSNIRNELV 779
>sp|Q03410|SYCP1_RAT Synaptonemal complex protein 1 OS=Rattus norvegicus GN=Sycp1 PE=2
SV=2
Length = 997
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 137/270 (50%), Gaps = 44/270 (16%)
Query: 506 KEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWE----QLDEKRAEVEKELKKISEQTEKL 561
+E I C+ QEE +LK+ E L++++ N E E + ++ EV+ +L K E +
Sbjct: 546 QEDIINCKKQEERMLKQIETLEEKEMNLRDELESVRKEFIQQGDEVKCKLDKSEENARSI 605
Query: 562 EKEKLSEEERIKRDKQLAEDHIKREWEALEVAKESFKATMDHEQSMITEKAESERRQLLH 621
E E L +E+++K + E+ + +E ++ + + E + +K+ +E +Q L+
Sbjct: 606 EYEVLKKEKQMK----ILENKCNNLKKQIENKSKNIEE-LHQENKALKKKSSAENKQ-LN 659
Query: 622 DFELQKRKLESDMQNRQEELEKDLKEKERLFEEEKERELSNINYLRDIARKEMEEMKLER 681
+E++ KLE ++ + +++ E E+ N NY ++I K++ E KL
Sbjct: 660 AYEIKVNKLELELASTKQKFE----------------EMIN-NYQKEIEIKKISEEKLLG 702
Query: 682 LKLEKEKQEVDSHRKHLEGEQVGIRKDIDM--------LVGLTKMLKEQREQIVKERDRF 733
++EK K VD E V ++K+ID+ +V L + K Q ++IV+ERD
Sbjct: 703 -EVEKAKATVD--------EAVKLQKEIDLRCQHKIAEMVALMEKHKHQYDKIVEERDSE 753
Query: 734 LNFVEKQKKCEHCAEITSEFVLSDLVQEIV 763
L + +++ + A++ E LS++ E+V
Sbjct: 754 LGLYKNREQEQSSAKVALETELSNIRNELV 783
>sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spo15 PE=1 SV=1
Length = 1957
Score = 35.0 bits (79), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 144/320 (45%), Gaps = 43/320 (13%)
Query: 183 EVEVKLRSVDAKVAEINRKSSEIERKSHEL-------ESRESALRMERASFIAEREAYEG 235
E E S+D ++N E+E + S+ L++ERA+F E E
Sbjct: 599 ENEQNFSSLDTSFKKLNESHQELENNHQTITKQLKDTSSKLQQLQLERANF----EQKES 654
Query: 236 TFSQQREDLREWERKLQDGEERLVKGQRIVNQREE----------KANEKEKIFKQKEKD 285
T S + DLR KL++ + L+K Q V+ E+ K+ E + K + K+
Sbjct: 655 TLSDENNDLRTKLLKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKN 714
Query: 286 LEEAQEKIDATNLSLMRKEDDINKRLANLITKEKEYDAARKSLEMKEEELRQLEEKLNAR 345
L E + + + +L + +D++ L++ A+ + + EL + E + R
Sbjct: 715 LREVIDNLKGKHETLEAQRNDLHSSLSD----------AKNTNAILSSELTKSSEDV-KR 763
Query: 346 EKVEVEKLLDEHKA---SLDAKQREFDLEIDQKRKAFDD--DLKSKVVEVEKKEAEINHK 400
VE L + KA S + + + + DD +++S+ + + E+++
Sbjct: 764 LTANVETLTQDSKAMKQSFTSLVNSYQSISNLYHELRDDHVNMQSQNNTLLESESKLKTD 823
Query: 401 EEKIAKREMALEKRLEKCKDKEKDVESK---LKDLNGREKTMKSEEKNLETEKKQLLADK 457
E + ++ M L ++K K + ESK LK++NG+ + + KNL + ++D
Sbjct: 824 CENLTQQNMTLIDNVQKLMHKHVNQESKVSELKEVNGK---LSLDLKNLRSSLNVAISDN 880
Query: 458 EDILTEKAELEKIRDANEQQ 477
+ ILT+ AEL K D+ EQ+
Sbjct: 881 DQILTQLAELSKNYDSLEQE 900
>sp|P35580|MYH10_HUMAN Myosin-10 OS=Homo sapiens GN=MYH10 PE=1 SV=3
Length = 1976
Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 161/626 (25%), Positives = 289/626 (46%), Gaps = 115/626 (18%)
Query: 101 QTFAEAKDALKREQAAHLIAITDVEKRE----ENLRKALGVEKQCVLDLEKALREMRSEN 156
Q AE K AL+ E H I D+ +R E L + L K+ +LEK + + ++N
Sbjct: 1174 QEVAELKKALEEETKNHEAQIQDMRQRHATALEELSEQLEQAKRFKANLEKNKQGLETDN 1233
Query: 157 AEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRE 216
E+ V +++ E E K + +DA+V E++ K SE +R EL +
Sbjct: 1234 KELACE-----------VKVLQQVKAESEHKRKKLDAQVQELHAKVSEGDRLRVELAEKA 1282
Query: 217 SALR--MERASFIAEREAYEGT-FSQQREDLREWERKLQDGEERL---VKGQRIVNQREE 270
S L+ ++ S + E +G F++ D E +LQD +E L + + ++ R
Sbjct: 1283 SKLQNELDNVSTLLEEAEKKGIKFAK---DAASLESQLQDTQELLQEETRQKLNLSSRIR 1339
Query: 271 KANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKEDDINKRLANLITKEKEYDAARKSLEM 330
+ E++ ++++++ EEA++ ++ L+L + D K++ + + + + A+K L
Sbjct: 1340 QLEEEKNSLQEQQEEEEEARKNLEKQVLALQSQLADTKKKVDDDLGTIESLEEAKKKLLK 1399
Query: 331 KEEELRQ-LEEKLNAREKVE-----VEKLLDEHKASLDAKQREFDLEIDQKRKAFDDDLK 384
E L Q LEEK A +K+E +++ LD+ LD QR+ +++K+K FD L
Sbjct: 1400 DAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLD-HQRQVASNLEKKQKKFDQLL- 1457
Query: 385 SKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEK 444
E+K + EE+ ++ + + ++ E+K L + ++
Sbjct: 1458 -----AEEKSISARYAEER------------DRAEAEAREKETKALSLARALEEALEAKE 1500
Query: 445 NLETEKKQLLADKEDILTEK-------AELEKIRDANEQQLLKIYEEKNQLRISEEERAE 497
E + KQL AD ED+++ K ELEK + A EQQ+ EE R +
Sbjct: 1501 EFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQV-------------EEMRTQ 1547
Query: 498 YLRLQSELKE-QIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISE 556
L+ EL+ + K RL+ M + K FE++ + DE+ E ++ L K
Sbjct: 1548 LEELEDELQATEDAKLRLEVNM--------QAMKAQFERDLQTRDEQNEEKKRLLIK--- 1596
Query: 557 QTEKLEKEKLSEEERIKRDKQLAEDHIKREWEALEVA-KESFKATMDHEQSMITEKAESE 615
Q +LE E E+ER +R AL VA K+ + + ++ I E A
Sbjct: 1597 QVRELEAE--LEDERKQR--------------ALAVASKKKMEIDLKDLEAQI-EAANKA 1639
Query: 616 RRQLLHDFELQKRKLESDMQNRQEELEKDLKEKERLFEEEKERELSNINYLRDIARKEME 675
R +++ Q RKL++ M++ Q ELE+ ++ +F + KE E K+++
Sbjct: 1640 RDEVIK----QLRKLQAQMKDYQRELEEARASRDEIFAQSKESE------------KKLK 1683
Query: 676 EMKLERLKLEKEKQEVDSHRKHLEGE 701
++ E L+L++E + R+H E E
Sbjct: 1684 SLEAEILQLQEELASSERARRHAEQE 1709
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.125 0.324
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 370,070,763
Number of Sequences: 539616
Number of extensions: 17102530
Number of successful extensions: 220621
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1935
Number of HSP's successfully gapped in prelim test: 7692
Number of HSP's that attempted gapping in prelim test: 91437
Number of HSP's gapped (non-prelim): 48676
length of query: 1041
length of database: 191,569,459
effective HSP length: 128
effective length of query: 913
effective length of database: 122,498,611
effective search space: 111841231843
effective search space used: 111841231843
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 67 (30.4 bits)