Query 048767
Match_columns 1041
No_of_seqs 37 out of 39
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 12:59:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 99.4 7.1E-07 1.5E-11 107.5 65.8 149 140-295 251-402 (880)
2 KOG0161 Myosin class II heavy 99.3 2.5E-05 5.5E-10 101.3 76.5 554 161-736 904-1527(1930)
3 PRK02224 chromosome segregatio 99.1 7.9E-05 1.7E-09 90.2 70.1 94 123-220 147-240 (880)
4 TIGR00606 rad50 rad50. This fa 99.1 0.00029 6.3E-09 89.8 76.4 75 143-217 397-471 (1311)
5 TIGR00606 rad50 rad50. This fa 99.0 0.00041 8.9E-09 88.4 70.0 140 432-586 824-967 (1311)
6 PRK03918 chromosome segregatio 98.9 0.00061 1.3E-08 82.4 65.6 41 679-719 666-706 (880)
7 KOG0161 Myosin class II heavy 98.8 0.0024 5.1E-08 83.9 77.7 634 66-740 1041-1707(1930)
8 PRK03918 chromosome segregatio 98.8 0.0012 2.5E-08 80.0 69.8 46 225-270 242-287 (880)
9 PRK01156 chromosome segregatio 98.8 0.0014 3.1E-08 80.0 68.6 45 115-160 140-186 (895)
10 TIGR02168 SMC_prok_B chromosom 98.7 0.0023 5E-08 78.1 80.3 29 693-721 993-1021(1179)
11 TIGR02168 SMC_prok_B chromosom 98.7 0.0034 7.3E-08 76.7 79.6 12 802-813 1016-1027(1179)
12 PF12128 DUF3584: Protein of u 98.6 0.0092 2E-07 76.1 65.7 207 494-704 594-810 (1201)
13 TIGR02169 SMC_prok_A chromosom 98.5 0.0096 2.1E-07 73.4 74.7 9 60-68 154-162 (1164)
14 PRK01156 chromosome segregatio 98.5 0.01 2.3E-07 72.7 63.2 12 21-32 23-34 (895)
15 TIGR02169 SMC_prok_A chromosom 98.4 0.016 3.4E-07 71.5 80.9 72 670-741 956-1039(1164)
16 COG1196 Smc Chromosome segrega 98.3 0.041 8.9E-07 70.1 79.1 98 67-166 214-314 (1163)
17 KOG4674 Uncharacterized conser 98.2 0.086 1.9E-06 69.4 72.8 415 94-543 926-1382(1822)
18 COG1196 Smc Chromosome segrega 98.1 0.074 1.6E-06 67.8 68.5 165 65-233 171-342 (1163)
19 PF10174 Cast: RIM-binding pro 98.1 0.073 1.6E-06 65.7 57.5 456 62-564 70-616 (775)
20 COG0419 SbcC ATPase involved i 97.9 0.15 3.2E-06 63.5 69.5 66 192-258 273-338 (908)
21 COG0419 SbcC ATPase involved i 97.8 0.21 4.7E-06 62.2 68.8 14 126-139 155-168 (908)
22 PF10174 Cast: RIM-binding pro 97.7 0.25 5.5E-06 61.2 63.2 471 149-643 5-532 (775)
23 PF07888 CALCOCO1: Calcium bin 97.7 0.21 4.5E-06 59.7 40.3 89 656-744 309-408 (546)
24 PF01576 Myosin_tail_1: Myosin 97.5 2.7E-05 5.8E-10 95.5 0.0 510 120-713 40-566 (859)
25 PF07888 CALCOCO1: Calcium bin 97.4 0.6 1.3E-05 56.0 45.2 41 700-740 410-450 (546)
26 KOG1029 Endocytic adaptor prot 97.4 0.49 1.1E-05 58.3 33.0 209 370-602 327-566 (1118)
27 KOG0250 DNA repair protein RAD 96.9 1.6 3.4E-05 55.7 32.8 118 447-564 326-444 (1074)
28 PF01576 Myosin_tail_1: Myosin 96.9 0.00023 5E-09 87.5 0.0 309 58-392 200-518 (859)
29 PRK11637 AmiB activator; Provi 96.5 2.5 5.4E-05 48.6 28.3 26 606-631 158-183 (428)
30 PF00261 Tropomyosin: Tropomyo 96.4 0.63 1.4E-05 49.7 21.7 94 248-344 91-187 (237)
31 PRK11637 AmiB activator; Provi 96.4 1.2 2.6E-05 51.1 24.7 50 309-358 86-135 (428)
32 KOG0250 DNA repair protein RAD 96.3 5.7 0.00012 51.0 34.0 169 376-565 297-466 (1074)
33 PF00038 Filament: Intermediat 96.2 2.4 5.3E-05 46.1 34.5 138 456-594 2-151 (312)
34 PRK12704 phosphodiesterase; Pr 96.2 0.16 3.5E-06 60.2 17.3 76 365-447 59-134 (520)
35 PF12128 DUF3584: Protein of u 96.0 8.2 0.00018 50.3 73.0 65 122-186 277-341 (1201)
36 PF00261 Tropomyosin: Tropomyo 96.0 2.9 6.3E-05 44.8 26.0 219 194-432 16-234 (237)
37 KOG0018 Structural maintenance 95.8 9.5 0.00021 49.2 33.3 107 495-604 288-400 (1141)
38 TIGR03319 YmdA_YtgF conserved 95.7 0.36 7.9E-06 57.3 17.3 72 365-443 53-124 (514)
39 PF08317 Spc7: Spc7 kinetochor 95.6 3.2 7E-05 46.5 23.0 166 411-582 126-291 (325)
40 PRK00106 hypothetical protein; 95.5 0.88 1.9E-05 54.6 19.5 72 365-443 74-145 (535)
41 PRK04863 mukB cell division pr 95.5 15 0.00032 49.4 42.9 148 142-294 232-400 (1486)
42 KOG0933 Structural maintenance 95.4 12 0.00026 48.1 33.2 276 284-563 677-979 (1174)
43 PF00038 Filament: Intermediat 95.3 5.4 0.00012 43.5 31.4 248 213-514 53-304 (312)
44 PHA02562 46 endonuclease subun 95.2 8.5 0.00018 45.0 27.8 92 470-561 307-398 (562)
45 KOG0964 Structural maintenance 95.1 15 0.00033 47.1 33.9 271 329-602 170-502 (1200)
46 PHA02562 46 endonuclease subun 94.9 10 0.00022 44.4 33.9 51 504-554 355-405 (562)
47 PRK12704 phosphodiesterase; Pr 94.8 1.1 2.5E-05 53.3 17.7 120 378-520 61-182 (520)
48 KOG0996 Structural maintenance 94.7 20 0.00044 46.8 41.2 264 321-596 336-612 (1293)
49 TIGR03319 YmdA_YtgF conserved 94.6 1.4 3E-05 52.6 17.6 13 500-512 156-168 (514)
50 PRK00106 hypothetical protein; 94.5 1.4 3.1E-05 52.9 17.4 32 451-482 132-163 (535)
51 PF12072 DUF3552: Domain of un 93.8 1.2 2.6E-05 46.7 13.4 70 371-440 61-130 (201)
52 KOG4674 Uncharacterized conser 93.7 39 0.00084 46.3 71.9 583 63-671 576-1253(1822)
53 PF13851 GAS: Growth-arrest sp 93.0 15 0.00032 39.2 21.4 144 495-654 22-168 (201)
54 KOG0964 Structural maintenance 92.4 44 0.00096 43.3 35.2 296 224-536 176-489 (1200)
55 KOG0977 Nuclear envelope prote 92.3 34 0.00074 41.8 28.6 302 154-514 81-384 (546)
56 PF12072 DUF3552: Domain of un 91.0 5 0.00011 42.2 13.7 58 389-446 72-129 (201)
57 PF09731 Mitofilin: Mitochondr 91.0 42 0.00091 40.2 23.9 47 730-777 429-475 (582)
58 KOG1029 Endocytic adaptor prot 90.4 62 0.0013 41.2 30.3 56 455-510 317-372 (1118)
59 PF05701 WEMBL: Weak chloropla 90.3 48 0.001 39.9 48.6 307 417-749 98-414 (522)
60 KOG0977 Nuclear envelope prote 89.1 65 0.0014 39.5 34.5 285 365-699 87-376 (546)
61 PRK12705 hypothetical protein; 88.4 20 0.00044 43.2 17.6 58 373-437 62-119 (508)
62 PF09755 DUF2046: Uncharacteri 88.4 53 0.0012 37.7 25.3 114 568-688 85-201 (310)
63 PF05483 SCP-1: Synaptonemal c 88.1 83 0.0018 39.6 66.1 479 44-554 22-567 (786)
64 PF05557 MAD: Mitotic checkpoi 87.2 7.9 0.00017 47.7 13.7 44 297-340 283-326 (722)
65 PF05701 WEMBL: Weak chloropla 86.8 80 0.0017 38.1 46.7 149 438-604 282-430 (522)
66 PF05557 MAD: Mitotic checkpoi 86.7 5.7 0.00012 48.9 12.1 23 634-656 618-640 (722)
67 KOG0612 Rho-associated, coiled 85.6 1.4E+02 0.0031 39.8 40.5 26 703-729 1018-1043(1317)
68 COG1340 Uncharacterized archae 84.8 79 0.0017 36.2 31.8 54 409-462 30-83 (294)
69 PF10146 zf-C4H2: Zinc finger- 84.6 34 0.00073 37.6 15.3 84 643-734 4-87 (230)
70 TIGR03185 DNA_S_dndD DNA sulfu 84.5 1.1E+02 0.0024 37.6 33.6 44 673-716 422-465 (650)
71 PRK09039 hypothetical protein; 83.2 47 0.001 38.1 16.4 113 131-247 65-177 (343)
72 PF05667 DUF812: Protein of un 82.9 1.3E+02 0.0029 37.3 26.1 54 451-504 491-544 (594)
73 smart00787 Spc7 Spc7 kinetocho 82.3 98 0.0021 35.4 21.4 166 411-582 121-286 (312)
74 PF13863 DUF4200: Domain of un 81.2 46 0.001 32.0 13.3 91 379-479 12-102 (126)
75 PRK04863 mukB cell division pr 79.6 2.6E+02 0.0055 38.4 46.0 100 145-249 228-338 (1486)
76 PRK12705 hypothetical protein; 78.2 1E+02 0.0023 37.5 17.7 60 365-428 65-124 (508)
77 PF09755 DUF2046: Uncharacteri 78.2 1.4E+02 0.003 34.6 21.8 96 517-615 80-186 (310)
78 PF05262 Borrelia_P83: Borreli 77.7 1E+02 0.0023 37.4 17.4 70 420-489 189-258 (489)
79 PF08317 Spc7: Spc7 kinetochor 77.1 1.4E+02 0.003 33.9 19.2 55 455-509 206-260 (325)
80 PF12718 Tropomyosin_1: Tropom 75.7 81 0.0017 32.2 13.7 94 197-301 11-104 (143)
81 KOG0976 Rho/Rac1-interacting s 75.6 2.6E+02 0.0056 36.3 45.6 104 329-434 102-208 (1265)
82 PF09726 Macoilin: Transmembra 74.8 2.4E+02 0.0053 35.7 23.8 54 372-433 543-597 (697)
83 PF00769 ERM: Ezrin/radixin/mo 74.8 1.1E+02 0.0024 33.6 15.5 79 458-536 12-90 (246)
84 TIGR01005 eps_transp_fam exopo 74.2 80 0.0017 39.1 15.8 74 160-233 182-263 (754)
85 PF06818 Fez1: Fez1; InterPro 73.8 1.4E+02 0.0029 32.8 15.4 45 584-628 144-192 (202)
86 PRK09039 hypothetical protein; 71.5 2E+02 0.0043 33.2 20.5 18 327-344 47-64 (343)
87 KOG0804 Cytoplasmic Zn-finger 70.5 1.7E+02 0.0037 35.5 16.4 109 507-638 347-455 (493)
88 KOG0612 Rho-associated, coiled 68.3 4.3E+02 0.0093 35.8 41.5 70 480-556 582-651 (1317)
89 PF04094 DUF390: Protein of un 67.4 3.6E+02 0.0078 34.6 26.6 67 88-156 397-472 (828)
90 KOG0994 Extracellular matrix g 67.4 4.5E+02 0.0097 35.7 29.3 69 315-384 1608-1678(1758)
91 COG1579 Zn-ribbon protein, pos 66.7 2.2E+02 0.0047 31.8 21.5 72 349-425 11-82 (239)
92 PF04111 APG6: Autophagy prote 66.4 96 0.0021 35.3 13.1 15 701-715 167-181 (314)
93 COG1579 Zn-ribbon protein, pos 66.4 2.2E+02 0.0048 31.8 22.8 91 519-613 94-184 (239)
94 PF09325 Vps5: Vps5 C terminal 64.8 1.8E+02 0.004 30.3 15.0 66 185-253 162-236 (236)
95 COG4026 Uncharacterized protei 64.8 74 0.0016 35.5 11.3 83 495-581 118-205 (290)
96 PF11559 ADIP: Afadin- and alp 64.0 1.6E+02 0.0036 29.4 14.7 72 415-489 75-146 (151)
97 PF04111 APG6: Autophagy prote 64.0 1.1E+02 0.0024 34.8 13.1 67 488-554 18-90 (314)
98 COG1340 Uncharacterized archae 63.5 2.8E+02 0.0061 32.0 29.4 23 631-653 133-155 (294)
99 PF10473 CENP-F_leu_zip: Leuci 63.5 1.9E+02 0.0041 30.0 18.9 67 505-571 29-95 (140)
100 PF10146 zf-C4H2: Zinc finger- 61.6 1.9E+02 0.0042 31.9 13.9 91 492-582 7-103 (230)
101 PF09787 Golgin_A5: Golgin sub 57.8 4.1E+02 0.009 32.1 24.4 67 64-130 121-191 (511)
102 KOG4673 Transcription factor T 56.2 5.5E+02 0.012 33.0 37.8 145 193-342 402-560 (961)
103 COG2433 Uncharacterized conser 55.0 1.7E+02 0.0036 36.7 13.1 61 491-555 434-494 (652)
104 KOG4643 Uncharacterized coiled 54.4 6.8E+02 0.015 33.5 44.3 85 457-541 466-550 (1195)
105 PF15462 Barttin: Bartter synd 53.0 33 0.00073 37.1 6.3 132 879-1038 75-210 (224)
106 PF09728 Taxilin: Myosin-like 53.0 4E+02 0.0087 30.5 33.8 65 658-722 230-308 (309)
107 PF07926 TPR_MLP1_2: TPR/MLP1/ 51.8 2.6E+02 0.0056 27.9 17.2 97 457-556 16-112 (132)
108 KOG0994 Extracellular matrix g 51.7 8E+02 0.017 33.6 33.0 41 395-435 1710-1750(1758)
109 COG4942 Membrane-bound metallo 50.2 5.4E+02 0.012 31.1 29.3 78 456-536 169-246 (420)
110 PRK00409 recombination and DNA 50.0 2.8E+02 0.006 35.5 14.4 34 156-189 142-175 (782)
111 PF15066 CAGE1: Cancer-associa 49.7 5.9E+02 0.013 31.4 21.3 108 456-580 384-491 (527)
112 TIGR01000 bacteriocin_acc bact 49.2 2.4E+02 0.0051 33.2 13.0 17 60-76 105-121 (457)
113 PF00769 ERM: Ezrin/radixin/mo 48.8 2.7E+02 0.0058 30.8 12.5 114 180-300 13-126 (246)
114 PF12126 DUF3583: Protein of u 47.7 5.1E+02 0.011 30.2 15.4 120 463-593 4-123 (324)
115 PF03962 Mnd1: Mnd1 family; I 46.9 3.3E+02 0.0071 29.0 12.4 36 462-497 66-101 (188)
116 KOG2129 Uncharacterized conser 46.5 6.3E+02 0.014 30.8 17.7 52 460-511 255-307 (552)
117 TIGR02680 conserved hypothetic 46.5 9.4E+02 0.02 32.8 27.9 109 78-201 712-822 (1353)
118 PF14988 DUF4515: Domain of un 45.6 4.3E+02 0.0093 28.7 13.4 95 596-690 7-103 (206)
119 TIGR01843 type_I_hlyD type I s 44.9 5E+02 0.011 29.2 17.8 164 181-344 76-271 (423)
120 KOG0962 DNA repair protein RAD 44.2 1E+03 0.022 32.7 64.5 84 619-714 993-1076(1294)
121 TIGR01069 mutS2 MutS2 family p 44.2 4.4E+02 0.0096 33.7 14.9 44 145-188 126-169 (771)
122 PF10212 TTKRSYEDQ: Predicted 44.1 3.6E+02 0.0079 33.3 13.5 21 332-353 493-513 (518)
123 PF14662 CCDC155: Coiled-coil 43.1 4.9E+02 0.011 28.6 23.9 172 443-634 17-188 (193)
124 PF04871 Uso1_p115_C: Uso1 / p 42.9 3.8E+02 0.0083 27.3 13.5 34 487-520 78-111 (136)
125 KOG0804 Cytoplasmic Zn-finger 42.9 6.8E+02 0.015 30.8 15.1 75 404-481 373-447 (493)
126 PF05149 Flagellar_rod: Parafl 41.6 6.1E+02 0.013 29.3 15.1 94 644-758 38-142 (289)
127 PF02841 GBP_C: Guanylate-bind 41.4 5.5E+02 0.012 28.7 14.6 11 139-149 39-49 (297)
128 PRK04778 septation ring format 40.8 7.7E+02 0.017 30.2 44.6 56 502-557 350-405 (569)
129 TIGR01069 mutS2 MutS2 family p 39.9 5.1E+02 0.011 33.2 14.6 24 500-523 565-588 (771)
130 KOG2129 Uncharacterized conser 39.4 8E+02 0.017 30.0 26.1 137 521-657 50-218 (552)
131 PRK10246 exonuclease subunit S 38.9 1.1E+03 0.023 31.3 69.7 59 122-180 164-231 (1047)
132 PF10473 CENP-F_leu_zip: Leuci 38.6 4.7E+02 0.01 27.2 15.4 100 247-346 1-100 (140)
133 KOG1296 Uncharacterized conser 38.3 12 0.00026 39.0 0.4 13 796-808 55-67 (161)
134 KOG0972 Huntingtin interacting 38.0 6.2E+02 0.013 29.7 13.3 155 347-507 204-372 (384)
135 PF03904 DUF334: Domain of unk 38.0 6.3E+02 0.014 28.4 15.8 111 507-623 43-154 (230)
136 PF09726 Macoilin: Transmembra 37.9 9.8E+02 0.021 30.6 26.7 88 286-377 423-516 (697)
137 PF03962 Mnd1: Mnd1 family; I 37.2 4.9E+02 0.011 27.8 11.9 42 457-499 68-109 (188)
138 PF08614 ATG16: Autophagy prot 37.2 3.4E+02 0.0075 28.5 10.8 76 231-306 70-145 (194)
139 PF14992 TMCO5: TMCO5 family 37.1 7.1E+02 0.015 28.7 15.1 64 368-432 37-100 (280)
140 PF11932 DUF3450: Protein of u 37.0 5.9E+02 0.013 27.8 13.5 68 502-569 37-111 (251)
141 PLN03188 kinesin-12 family pro 36.3 1E+03 0.022 32.7 16.5 26 125-150 1078-1103(1320)
142 PF07106 TBPIP: Tat binding pr 36.2 3.3E+02 0.0072 27.9 10.2 16 458-473 72-87 (169)
143 KOG1962 B-cell receptor-associ 36.0 3E+02 0.0065 30.5 10.3 55 520-585 157-211 (216)
144 PF05622 HOOK: HOOK protein; 35.8 12 0.00026 46.1 0.0 78 398-476 304-381 (713)
145 KOG4661 Hsp27-ERE-TATA-binding 35.7 5.6E+02 0.012 32.3 13.2 41 161-201 248-296 (940)
146 PRK00409 recombination and DNA 35.7 7.3E+02 0.016 31.9 15.0 60 317-376 535-594 (782)
147 PF04094 DUF390: Protein of un 35.6 1.1E+03 0.024 30.6 18.8 89 256-347 481-572 (828)
148 KOG0996 Structural maintenance 35.3 1.3E+03 0.029 31.5 68.9 153 177-336 417-573 (1293)
149 PTZ00266 NIMA-related protein 34.3 4.3E+02 0.0093 35.2 12.9 89 476-578 438-526 (1021)
150 PF14943 MRP-S26: Mitochondria 33.5 6.1E+02 0.013 27.0 11.8 43 37-81 8-57 (170)
151 TIGR03007 pepcterm_ChnLen poly 33.4 8.7E+02 0.019 28.7 18.7 39 164-202 153-191 (498)
152 PF10186 Atg14: UV radiation r 33.4 6.4E+02 0.014 27.1 17.6 47 391-437 59-105 (302)
153 PRK06800 fliH flagellar assemb 33.2 96 0.0021 33.8 6.0 47 655-701 35-81 (228)
154 KOG0905 Phosphoinositide 3-kin 32.5 50 0.0011 43.8 4.4 21 139-159 339-359 (1639)
155 smart00806 AIP3 Actin interact 32.5 1E+03 0.022 29.1 15.3 146 147-299 155-325 (426)
156 TIGR03185 DNA_S_dndD DNA sulfu 32.0 1.1E+03 0.023 29.3 38.3 54 322-380 233-286 (650)
157 KOG0995 Centromere-associated 31.9 1.1E+03 0.025 29.6 40.0 60 504-563 298-360 (581)
158 KOG1103 Predicted coiled-coil 31.5 9.8E+02 0.021 28.7 17.7 28 409-436 110-138 (561)
159 PRK15422 septal ring assembly 31.4 3.2E+02 0.0069 26.2 8.3 53 481-533 13-65 (79)
160 PF09789 DUF2353: Uncharacteri 30.9 9.2E+02 0.02 28.2 24.5 39 708-746 190-228 (319)
161 KOG4657 Uncharacterized conser 30.6 5.9E+02 0.013 28.8 11.4 69 275-343 49-117 (246)
162 PF12240 Angiomotin_C: Angiomo 30.4 7.9E+02 0.017 27.3 13.3 155 92-285 1-165 (205)
163 PF10186 Atg14: UV radiation r 30.4 7.1E+02 0.015 26.7 17.1 40 394-433 69-108 (302)
164 cd07672 F-BAR_PSTPIP2 The F-BA 30.3 7.8E+02 0.017 27.2 21.2 104 505-623 105-216 (240)
165 KOG3859 Septins (P-loop GTPase 29.5 4.3E+02 0.0093 31.0 10.5 52 411-465 350-401 (406)
166 smart00502 BBC B-Box C-termina 29.5 4.6E+02 0.0099 24.2 12.1 48 597-644 40-87 (127)
167 TIGR03545 conserved hypothetic 29.3 4E+02 0.0087 33.0 11.0 25 458-482 212-236 (555)
168 PF09744 Jnk-SapK_ap_N: JNK_SA 28.4 7.2E+02 0.016 26.2 12.7 78 396-473 79-157 (158)
169 PF15066 CAGE1: Cancer-associa 28.0 1.2E+03 0.027 28.8 21.3 42 434-475 387-428 (527)
170 PF14197 Cep57_CLD_2: Centroso 27.7 1.8E+02 0.0038 26.8 5.9 64 696-763 1-64 (69)
171 PF09789 DUF2353: Uncharacteri 27.3 1.1E+03 0.023 27.8 23.2 151 503-671 68-227 (319)
172 cd07647 F-BAR_PSTPIP The F-BAR 27.1 8.3E+02 0.018 26.5 19.0 48 575-623 168-215 (239)
173 KOG1666 V-SNARE [Intracellular 26.7 9.4E+02 0.02 27.0 13.6 71 237-314 116-186 (220)
174 PF05622 HOOK: HOOK protein; 26.5 22 0.00047 44.0 0.0 24 78-101 177-200 (713)
175 PRK15422 septal ring assembly 26.3 5.9E+02 0.013 24.5 9.9 58 498-559 6-63 (79)
176 PF14443 DBC1: DBC1 25.7 60 0.0013 33.1 2.9 39 36-74 13-52 (126)
177 KOG0249 LAR-interacting protei 25.6 1.6E+03 0.035 29.3 16.6 59 379-437 96-156 (916)
178 KOG0995 Centromere-associated 25.2 1.5E+03 0.032 28.7 43.9 88 441-539 291-378 (581)
179 PF07218 RAP1: Rhoptry-associa 24.9 1.1E+02 0.0025 37.8 5.3 27 75-101 215-241 (782)
180 PF13851 GAS: Growth-arrest sp 24.9 8.9E+02 0.019 26.1 21.1 85 144-235 6-90 (201)
181 TIGR02977 phageshock_pspA phag 24.6 7.7E+02 0.017 26.5 11.0 102 139-263 30-134 (219)
182 COG4942 Membrane-bound metallo 24.0 1.4E+03 0.03 27.9 29.6 63 489-551 136-198 (420)
183 PRK10884 SH3 domain-containing 24.0 4.6E+02 0.01 28.5 9.2 54 256-309 118-171 (206)
184 TIGR03017 EpsF chain length de 23.8 1.2E+03 0.025 27.1 20.7 46 159-204 158-203 (444)
185 KOG1924 RhoA GTPase effector D 23.8 93 0.002 39.9 4.5 46 422-467 872-917 (1102)
186 PF05911 DUF869: Plant protein 23.7 1.7E+03 0.037 29.0 18.2 187 60-258 503-710 (769)
187 KOG2675 Adenylate cyclase-asso 23.5 1E+02 0.0022 37.2 4.5 11 59-69 262-272 (480)
188 PF06476 DUF1090: Protein of u 23.1 2.3E+02 0.005 28.3 6.3 22 142-163 45-66 (115)
189 PF03194 LUC7: LUC7 N_terminus 23.0 3.1E+02 0.0067 30.5 7.9 16 736-751 186-201 (254)
190 PF06818 Fez1: Fez1; InterPro 22.9 1.1E+03 0.023 26.2 16.3 29 505-536 136-164 (202)
191 PF05529 Bap31: B-cell recepto 22.4 5.4E+02 0.012 26.9 9.1 36 502-537 156-191 (192)
192 PF12037 DUF3523: Domain of un 22.0 1.3E+03 0.027 26.7 23.0 142 461-615 78-219 (276)
193 PF06103 DUF948: Bacterial pro 21.7 2.2E+02 0.0048 26.2 5.6 53 139-191 25-77 (90)
194 PF14998 Ripply: Transcription 21.5 80 0.0017 30.5 2.7 62 8-87 2-65 (87)
195 PF15254 CCDC14: Coiled-coil d 21.4 2E+03 0.042 28.8 15.0 86 539-631 452-537 (861)
196 PF09787 Golgin_A5: Golgin sub 21.1 1.5E+03 0.033 27.4 28.2 17 683-699 410-426 (511)
197 KOG2350 Zn-finger protein join 21.0 67 0.0014 35.1 2.3 71 755-825 15-86 (221)
198 PF09304 Cortex-I_coil: Cortex 21.0 8.2E+02 0.018 24.7 9.4 96 61-171 11-106 (107)
199 PRK08404 V-type ATP synthase s 20.8 7.9E+02 0.017 24.0 10.5 33 145-177 67-99 (103)
200 PF10498 IFT57: Intra-flagella 20.7 9.8E+02 0.021 28.2 11.6 65 372-436 225-289 (359)
201 PF02172 KIX: KIX domain; Int 20.5 48 0.001 31.3 1.0 36 38-77 19-56 (81)
202 KOG1853 LIS1-interacting prote 20.3 1.4E+03 0.03 26.5 14.3 79 206-291 51-129 (333)
203 PRK10884 SH3 domain-containing 20.2 1.1E+03 0.023 25.8 11.0 7 463-469 151-157 (206)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=99.45 E-value=7.1e-07 Score=107.45 Aligned_cols=149 Identities=16% Similarity=0.246 Sum_probs=67.6
Q ss_pred HHHHhHHHHHHHHHhhhhhhh---hcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhHH
Q 048767 140 QCVLDLEKALREMRSENAEIK---FTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRE 216 (1041)
Q Consensus 140 qCVadLEKAL~emr~E~AEiK---~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE 216 (1041)
+.+..|+..+..+...+.+.. -....++.+.+.-+..++.+...+...+..+....+..+-+...+..++.+++...
T Consensus 251 ~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l 330 (880)
T PRK02224 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL 330 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555444443332 12233444444444444444444444444444444555555555566666666665
Q ss_pred HHHHHHHhHHHHHHhhhhhhhHHHhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHH
Q 048767 217 SALRMERASFIAEREAYEGTFSQQREDLREWERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDA 295 (1041)
Q Consensus 217 ~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqe~eerL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~ 295 (1041)
+.++.....+..+.+.+...+..-...+ .+.++.+.....-+..-+..+......+...+.+|++....|+.
T Consensus 331 ~~~~~~l~~~~~~~e~~~~~~~~le~~~-------~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~ 402 (880)
T PRK02224 331 EECRVAAQAHNEEAESLREDADDLEERA-------EELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGD 402 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555544444444333333333333333 33333333333333333334444444444555555555555543
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.32 E-value=2.5e-05 Score=101.26 Aligned_cols=554 Identities=22% Similarity=0.319 Sum_probs=314.3
Q ss_pred hcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhHHHHHHHHHhHHHHHHhhhhhhhHHH
Q 048767 161 FTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRESALRMERASFIAEREAYEGTFSQQ 240 (1041)
Q Consensus 161 ~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~Q 240 (1041)
...+..|.+...=+...+++...++.++..++... .++...+.++|.--..++++.-.-.......++++..+
T Consensus 904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~-------~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~ 976 (1930)
T KOG0161|consen 904 QELEKELKELKERLEEEEEKNAELERKKRKLEQEV-------QELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSL 976 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555554222 22333444444444455555555555566666666666
Q ss_pred hhhHHHHHHHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhhhhhhhh-------HHHHHHh
Q 048767 241 REDLREWERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKEDD-------INKRLAN 313 (1041)
Q Consensus 241 Re~L~EweKkLqe~eerL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~~~~~Lk~kedd-------i~~rl~~ 313 (1041)
++.+..--|.=...++++-+.+.-|...++.++.-.+.+.+.+..|++++..++..+....+.+-. +...-..
T Consensus 977 ~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~ 1056 (1930)
T KOG0161|consen 977 DENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQES 1056 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 666665544444468888888888888889888888888888888888888888877777655522 2111222
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhh--HHHHHHHHHH-----------------hHhhHHhhhhhhhHHHHH
Q 048767 314 LITKEKEYDAARKSLEMKEEELRQLEEKLNARE--KVEVEKLLDE-----------------HKASLDAKQREFDLEIDQ 374 (1041)
Q Consensus 314 L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE--~~eIQkLlde-----------------h~a~L~~Kk~eFElElE~ 374 (1041)
+..-......+...|.++|-+|..++.++..-. ....|+.+.+ ..+.++..++++..+++.
T Consensus 1057 ~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~ 1136 (1930)
T KOG0161|consen 1057 IEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEE 1136 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333445666677778888888777775433 2222333222 234455566666666666
Q ss_pred HhhchHHHHHHHHHHH---HHHhhhhhhhHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHhhhhhhhhhhhhHHhhhH
Q 048767 375 KRKAFDDDLKSKVVEV---EKKEAEINHKEEKIAKREMALEKRLEKCK----DKEKDVESKLKDLNGREKTMKSEEKNLE 447 (1041)
Q Consensus 375 kRKs~deel~~K~~~~---e~rEvel~h~Eekl~krEqaLe~k~~~lk----eKEkdl~~K~k~LkEkEksL~aeEK~le 447 (1041)
...-+++-......-. .++|.++..+-..+.+-....+.++..+. +.=.++.+-+..++.....+..+...|+
T Consensus 1137 l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq 1216 (1930)
T KOG0161|consen 1137 LKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQ 1216 (1930)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666544333333 24555555555444444444444433333 2334455555566665566666666666
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 448 TEKKQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLK 527 (1041)
Q Consensus 448 ~ek~~L~~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk 527 (1041)
.+-..|..+-..+...++++++..-.++ .++.+.+.++.-...-++++..-.++|..|+..+=.|.++....+..+-
T Consensus 1217 ~e~~~l~~ev~~~~~~k~~~e~~~k~~E---~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~ 1293 (1930)
T KOG0161|consen 1217 REIADLAAELEQLSSEKKDLEKKDKKLE---AQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALS 1293 (1930)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHH
Confidence 6666666666666677777777776665 3445555556666666677777788888888888888888888888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHhHHHHHHhHHHHHHhhHhhhhH
Q 048767 528 QQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEERIKRDKQLAEDHIKREWEALEVAKESFKATMDHEQSM 607 (1041)
Q Consensus 528 ~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~erLK~Ek~~~~~~~krelE~L~~ekEsF~~~M~hE~s~ 607 (1041)
..+..|+.+-+.+ +.+|..| +..+-++..-+ -++..+.+.++.+|.-+.+....-.-. ..+-.-+=+.
T Consensus 1294 r~~~~~~~qle~~---k~qle~e----~r~k~~l~~~l----~~l~~e~~~l~e~leee~e~~~~l~r~-lsk~~~e~~~ 1361 (1930)
T KOG0161|consen 1294 RDKQALESQLEEL---KRQLEEE----TREKSALENAL----RQLEHELDLLREQLEEEQEAKNELERK-LSKANAELAQ 1361 (1930)
T ss_pred HHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 8888888776666 3333333 33444444332 345556777777777776665421110 1112223344
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhHhHHHHHHHHHHHH----------------------------------HHHHHHHHH
Q 048767 608 ITEKAESERRQLLHDFELQKRKLESDMQNRQEELEKD----------------------------------LKEKERLFE 653 (1041)
Q Consensus 608 ~~ek~q~Erad~l~d~E~qkreLe~~~~~rqEE~E~~----------------------------------L~EREk~FE 653 (1041)
|-.|++....+-+-+++.-|+.|...++.-++.+|-. |..+-+.|+
T Consensus 1362 ~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~ 1441 (1930)
T KOG0161|consen 1362 WKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFE 1441 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555554444443322 222333333
Q ss_pred H---HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcHHHHHHHhHHHHHHHHHHHHHH
Q 048767 654 E---EKERELSNINYLRDIARKEMEEMKLERLKLEKEKQEVDSHRKHLEGEQVGIRKDIDMLVGLTKMLKEQREQIVKER 730 (1041)
Q Consensus 654 e---ek~~EL~~In~lke~a~kE~E~v~lE~~rLekEr~Ei~~~ke~le~e~~em~kdIeeL~~ls~KLk~QRE~~~~eR 730 (1041)
. +-.+-...+....+.+.++..+...+..++...-.+.....+.+.++-..|...|.+|...-.-+-.....+...+
T Consensus 1442 k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~ 1521 (1930)
T KOG0161|consen 1442 KLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEK 1521 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1222334455555566666666666666666555555555555555555555555555555554444444444444
Q ss_pred HHHHHH
Q 048767 731 DRFLNF 736 (1041)
Q Consensus 731 e~f~~~ 736 (1041)
..+-..
T Consensus 1522 r~le~e 1527 (1930)
T KOG0161|consen 1522 RRLEQE 1527 (1930)
T ss_pred HHHHHH
Confidence 444443
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=99.15 E-value=7.9e-05 Score=90.22 Aligned_cols=94 Identities=10% Similarity=0.202 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcc
Q 048767 123 DVEKREENLRKALGVEKQCVLDLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKS 202 (1041)
Q Consensus 123 EaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~ 202 (1041)
....|.+=+.+.+|+. . +-.+...+.+++..+..++-...+.+.+....+... ...++...|..+...++++....
T Consensus 147 ~p~~R~~ii~~l~~l~-~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~l~~~l~~~~~~l~el~~~i 222 (880)
T PRK02224 147 TPSDRQDMIDDLLQLG-K-LEEYRERASDARLGVERVLSDQRGSLDQLKAQIEEK--EEKDLHERLNGLESELAELDEEI 222 (880)
T ss_pred CHHHHHHHHHHHhCCH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888899999983 3 355677788888888888888888888887777662 23455666677777776666666
Q ss_pred hHHhhhhhhhhhHHHHHH
Q 048767 203 SEIERKSHELESRESALR 220 (1041)
Q Consensus 203 s~aeRKL~eVEaRE~~Lr 220 (1041)
+.+...+..+...-..|.
T Consensus 223 ~~~~~~~~~l~~~l~~l~ 240 (880)
T PRK02224 223 ERYEEQREQARETRDEAD 240 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 655555555544444443
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=0.00029 Score=89.75 Aligned_cols=75 Identities=8% Similarity=0.029 Sum_probs=50.6
Q ss_pred HhHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhHHH
Q 048767 143 LDLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRES 217 (1041)
Q Consensus 143 adLEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~ 217 (1041)
..|.+.|+....+...++-..+..+..+..-+..+..+....+..+..+...+....+....+.++|..++.-++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~ 471 (1311)
T TIGR00606 397 TLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSD 471 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChH
Confidence 346677777777777777777777777777777777777777777666666666666666666666665444443
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=0.00041 Score=88.42 Aligned_cols=140 Identities=14% Similarity=0.239 Sum_probs=59.9
Q ss_pred hhhhhhhhhhHHhhhHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Q 048767 432 LNGREKTMKSEEKNLETEKKQLLADKEDILTEKAELEKI---RDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQ 508 (1041)
Q Consensus 432 LkEkEksL~aeEK~le~ek~~L~~dkeei~~lK~elEK~---~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeE 508 (1041)
+.+-+..+.+.++.+..-...+..-..+...++.+|..+ ...+...+.++.. -+.-...|+.+
T Consensus 824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~--------------~l~~r~~le~~ 889 (1311)
T TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT--------------NLQRRQQFEEQ 889 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Confidence 344444444444444444444444444444444444444 3333444444443 22233445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHhHHHHHHHHHHHHHh
Q 048767 509 IGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQ-TEKLEKEKLSEEERIKRDKQLAEDHIKRE 586 (1041)
Q Consensus 509 Id~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~ee-re~le~~~~~E~erLK~Ek~~~~~~~kre 586 (1041)
|+.+..+...+-.+..+++.+..-...+|+.+-..+..+......-..+ ...+ .-+...-+.|..--..+++|+...
T Consensus 890 L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~y~~~~ 967 (1311)
T TIGR00606 890 LVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKV-NDIKEKVKNIHGYMKDIENKIQDG 967 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5555555555555555555555544445544444443333322222111 1112 122233444555555555555544
No 6
>PRK03918 chromosome segregation protein; Provisional
Probab=98.91 E-value=0.00061 Score=82.38 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhcHHHHHHHhHHH
Q 048767 679 LERLKLEKEKQEVDSHRKHLEGEQVGIRKDIDMLVGLTKML 719 (1041)
Q Consensus 679 lE~~rLekEr~Ei~~~ke~le~e~~em~kdIeeL~~ls~KL 719 (1041)
.+...+.....++......+..+.-.+.++|+.+...-.++
T Consensus 666 ~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l 706 (880)
T PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER 706 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444443333333
No 7
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.83 E-value=0.0024 Score=83.87 Aligned_cols=634 Identities=20% Similarity=0.258 Sum_probs=318.9
Q ss_pred HHHHHHHHHHhhhhhcchhheeeccch----hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHH
Q 048767 66 EKVSKLENELFEYQYNMGLLLIEKKEW----SSKYEELKQTFAEAKDALKREQAAHLIAITDVEKREENLRKALGVEKQC 141 (1041)
Q Consensus 66 a~iskLE~ElydYQynMGLLLiEkKEw----tSk~eel~qa~~ea~~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqC 141 (1041)
-.+-+|+.++-+.|+++-.+-..+-++ ..+..+|.+..... +-+..+-+-+.--+.+...|=.-|.--|.-|+.|
T Consensus 1041 k~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~-e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~ 1119 (1930)
T KOG0161|consen 1041 KAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKL-EDEQAEVAQLQKQIKELEARIKELEEELEAERAS 1119 (1930)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355688899999999888755544433 33444444422222 2234445555666777777788888899999999
Q ss_pred HHhHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhHHHHHHH
Q 048767 142 VLDLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRESALRM 221 (1041)
Q Consensus 142 VadLEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrR 221 (1041)
.+-+||+..+|..++..++---+-. .-..-+.+.+...+.+|+.+-++.++..-..-++--..||
T Consensus 1120 r~K~ek~r~dL~~ele~l~~~Lee~--------------~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr- 1184 (1930)
T KOG0161|consen 1120 RAKAERQRRDLSEELEELKEELEEQ--------------GGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELR- 1184 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-
Confidence 9999999999999987766322221 1112222222333334444433333333333333323332
Q ss_pred HHhHHHHHHhhhhhhhHHHhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhhh
Q 048767 222 ERASFIAEREAYEGTFSQQREDLREWERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLM 301 (1041)
Q Consensus 222 erlSf~~Erea~E~~i~~QRe~L~EweKkLqe~eerL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~~~~~Lk 301 (1041)
-.+.........++.---..=..-+|.-+..+.-+.+...-+.++...-...++..+..+..|-+++-+++.....+.
T Consensus 1185 --~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~ 1262 (1930)
T KOG0161|consen 1185 --KKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRN 1262 (1930)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222221111111122233333344444555556666666666666666666677777766665544332
Q ss_pred h---hhhhHHHHHHhhhhhHHHHHHHHh----hhhhhHHHHHHHHHHHhhhhHHHHHHHHHHhHhhHHhhhhhhhHHHHH
Q 048767 302 R---KEDDINKRLANLITKEKEYDAARK----SLEMKEEELRQLEEKLNAREKVEVEKLLDEHKASLDAKQREFDLEIDQ 374 (1041)
Q Consensus 302 ~---keddi~~rl~~L~~kEke~~~~~~----~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~ 374 (1041)
. +...+..-+..|+....+....-+ .....+..|-.+...|..-- -.+..|....+.++.|++.
T Consensus 1263 ~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~---------r~k~~l~~~l~~l~~e~~~ 1333 (1930)
T KOG0161|consen 1263 DLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEET---------REKSALENALRQLEHELDL 1333 (1930)
T ss_pred HHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 1 222222223333322222222111 11222222222222211111 1235677888889999999
Q ss_pred HhhchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHHhhhHHHHHHHH
Q 048767 375 KRKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQLL 454 (1041)
Q Consensus 375 kRKs~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~aeEK~le~ek~~L~ 454 (1041)
.|+.++++++.+-.-.-+-=......=.-..+=+-.+....+.+.+--+-+..++..+.+....+.+..-.|+.-+..|+
T Consensus 1334 l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~ 1413 (1930)
T KOG0161|consen 1334 LREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQ 1413 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988763322211111122222233334444446777777888888888999988888888888888889888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 455 ADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFE 534 (1041)
Q Consensus 455 ~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE 534 (1041)
.+-+.+..--..+-..-++++.+..+.+ ++..+.+.-+..|+.+|...+...|.....+++=...|..-+.
T Consensus 1414 ~el~d~~~d~~~~~~~~~~le~k~k~f~------k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e--- 1484 (1930)
T KOG0161|consen 1414 QELEDLQLDLERSRAAVAALEKKQKRFE------KLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLE--- 1484 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---
Confidence 8776665444444444566666666655 3345566666666777776666666555444332211111111
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHhHHHHHHHHHHHHHhHHHHHHhHHH---HHHhhHhhhhHH
Q 048767 535 KEWEQLDEKRAEVEKELKKISEQTEKLEKEKL---SEEERIKRDKQLAEDHIKREWEALEVAKES---FKATMDHEQSMI 608 (1041)
Q Consensus 535 ~EWE~LDEKR~el~KE~~~I~eere~le~~~~---~E~erLK~Ek~~~~~~~krelE~L~~ekEs---F~~~M~hE~s~~ 608 (1041)
.=+.|......+.-+..++..+..-+.+-++ ....++-.++..|+..+..--.+|..+.-. +.-.|..-|++
T Consensus 1485 -~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e- 1562 (1930)
T KOG0161|consen 1485 -QLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSE- 1562 (1930)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-
Confidence 1122222233333333333333222222221 111122222222222222211111111110 11112222222
Q ss_pred HHHHHHHHHHHhhHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhhhhHHHHHHHHHHHHHHHH
Q 048767 609 TEKAESERRQLLHDFELQKRKLESDMQNRQEELEKDLKEKERLFEEEK---------ERELSNINYLRDIARKEMEEMKL 679 (1041)
Q Consensus 609 ~ek~q~Erad~l~d~E~qkreLe~~~~~rqEE~E~~L~EREk~FEeek---------~~EL~~In~lke~a~kE~E~v~l 679 (1041)
+.+..+.--.+||..|+++--.+..-+.+++..-+.|--.+--+| +--|++-|....-+.+.|-..+.
T Consensus 1563 ---~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~ 1639 (1930)
T KOG0161|consen 1563 ---IERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQA 1639 (1930)
T ss_pred ---HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 222333334467777787777777777788877777777776644 22233444444444444444444
Q ss_pred HHHHHHHHHHHHHhhhhhhh-------hhhhhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 048767 680 ERLKLEKEKQEVDSHRKHLE-------GEQVGIRKDIDMLVGLTKMLKEQREQIVKERDRFLNFVEKQ 740 (1041)
Q Consensus 680 E~~rLekEr~Ei~~~ke~le-------~e~~em~kdIeeL~~ls~KLk~QRE~~~~eRe~f~~~vEkl 740 (1041)
-+.-|+.+..++..-++.+- +....++..+++|..--.-+-.-|..+-.++.++...|-.+
T Consensus 1640 ~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~ 1707 (1930)
T KOG0161|consen 1640 QLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNEL 1707 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44444444444444444433 33334444455555544555555555666666666555554
No 8
>PRK03918 chromosome segregation protein; Provisional
Probab=98.82 E-value=0.0012 Score=79.98 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=27.6
Q ss_pred HHHHHHhhhhhhhHHHhhhHHHHHHHhhhhhhhhhhhhhhhhhhHH
Q 048767 225 SFIAEREAYEGTFSQQREDLREWERKLQDGEERLVKGQRIVNQREE 270 (1041)
Q Consensus 225 Sf~~Erea~E~~i~~QRe~L~EweKkLqe~eerL~~~qr~LNqREe 270 (1041)
....+....+..+..-...+.+|+..|.+.+..+...+.++++.+.
T Consensus 242 ~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~ 287 (880)
T PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE 287 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555556777777777777777766666655443
No 9
>PRK01156 chromosome segregation protein; Provisional
Probab=98.80 E-value=0.0014 Score=80.00 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=29.0
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhhhH--HHHHhHHHHHHHHHhhhhhhh
Q 048767 115 AAHLIAITDVEKREENLRKALGVEK--QCVLDLEKALREMRSENAEIK 160 (1041)
Q Consensus 115 aAhl~ALsEaeKREEnLkKALgvEK--qCVadLEKAL~emr~E~AEiK 160 (1041)
..+++..+. ..|.+-+...+|++. .|...|-.++..+++++..+.
T Consensus 140 ~~~l~~~~~-~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~~ei~~le 186 (895)
T PRK01156 140 MDSLISGDP-AQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNID 186 (895)
T ss_pred hHHHHhCCH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443333 456667999999985 566666677777777665554
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.73 E-value=0.0023 Score=78.13 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=14.2
Q ss_pred hhhhhhhhhhhhhhhcHHHHHHHhHHHHH
Q 048767 693 SHRKHLEGEQVGIRKDIDMLVGLTKMLKE 721 (1041)
Q Consensus 693 ~~ke~le~e~~em~kdIeeL~~ls~KLk~ 721 (1041)
.....+..+..++...++.|...-.++.+
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~ 1021 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKETLEE 1021 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555554444443
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.67 E-value=0.0034 Score=76.74 Aligned_cols=12 Identities=17% Similarity=0.030 Sum_probs=6.8
Q ss_pred hhHHHhHhhhhh
Q 048767 802 ISWLRKCTSKIF 813 (1041)
Q Consensus 802 ~SwlrKCtskIF 813 (1041)
+.=|.+++..+|
T Consensus 1016 i~~i~~~~~~~f 1027 (1179)
T TIGR02168 1016 KETLEEAIEEID 1027 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 444555666666
No 12
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.56 E-value=0.0092 Score=76.08 Aligned_cols=207 Identities=20% Similarity=0.341 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhH
Q 048767 494 ERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEERIK 573 (1041)
Q Consensus 494 ER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~erLK 573 (1041)
++.+|......|.++|..+..+...+.+..+.+..+.....+.-+.+...-+..+-+++........+-.-..+...++.
T Consensus 594 ~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 594 DVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46688888999999999999999999999999999888888888888888888888888777777777767777777777
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHhhHhhhhHHHHHHHHHHHHHhhHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 048767 574 RDKQLAEDHIKREWEALEVAKESFKATMDHEQSMITEKAESERRQLLHDFELQKRKLESDMQNRQEELEKDLKEKERLFE 653 (1041)
Q Consensus 574 ~Ek~~~~~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLe~~~~~rqEE~E~~L~EREk~FE 653 (1041)
..+..-+..+...+..|..+-..|- .++..|....+........++--+..+++..+....+.+...+..+...|.
T Consensus 674 ~~~~~~~~~~~~~l~~l~~~l~~~~----~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~ 749 (1201)
T PF12128_consen 674 EAKEERKEQIEEQLNELEEELKQLK----QELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK 749 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888877777665553 455566666666666666666666666666666666666666665555554
Q ss_pred HH-------HHHHhhh--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 048767 654 EE-------KERELSN--INY-LRDIARKEMEEMKLERLKLEKEKQEVDSHRKHLEGEQVG 704 (1041)
Q Consensus 654 ee-------k~~EL~~--In~-lke~a~kE~E~v~lE~~rLekEr~Ei~~~ke~le~e~~e 704 (1041)
.+ ...+|.. |+- .-..++.+++.+.-++.+++.-|..|..=+.=+...|..
T Consensus 750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~ 810 (1201)
T PF12128_consen 750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDK 810 (1201)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 43 3344432 221 445567788888888888888888887766666666553
No 13
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.51 E-value=0.0096 Score=73.36 Aligned_cols=9 Identities=0% Similarity=0.379 Sum_probs=3.8
Q ss_pred cHHHHHHHH
Q 048767 60 DVESLAEKV 68 (1041)
Q Consensus 60 D~~aLia~i 68 (1041)
++..++..|
T Consensus 154 ~r~~~~~~~ 162 (1164)
T TIGR02169 154 ERRKIIDEI 162 (1164)
T ss_pred HHHHHHHHH
Confidence 333444444
No 14
>PRK01156 chromosome segregation protein; Provisional
Probab=98.48 E-value=0.01 Score=72.71 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCC
Q 048767 21 NGTGSVSNPTTV 32 (1041)
Q Consensus 21 ~g~~~~~~~~~g 32 (1041)
.|...-.||||.
T Consensus 23 ~gi~~I~G~NGs 34 (895)
T PRK01156 23 TGINIITGKNGA 34 (895)
T ss_pred CCeEEEECCCCC
Confidence 355555566544
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.41 E-value=0.016 Score=71.55 Aligned_cols=72 Identities=13% Similarity=0.222 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhhhhhhhhhhcHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHH
Q 048767 670 ARKEMEEMKLERLKLE-------KEKQEVDSHRKHLEGEQVGIRKDIDMLVGLTKMLKEQREQ-----IVKERDRFLNFV 737 (1041)
Q Consensus 670 a~kE~E~v~lE~~rLe-------kEr~Ei~~~ke~le~e~~em~kdIeeL~~ls~KLk~QRE~-----~~~eRe~f~~~v 737 (1041)
+..++..+..++..+. .+-.++......+..++.++.+.++.|...-.+|.+.|.. |..=...|-..+
T Consensus 956 l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~ 1035 (1164)
T TIGR02169 956 VQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFNEIF 1035 (1164)
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555443 4555666666667777777777777777777777666432 333355666655
Q ss_pred Hhhc
Q 048767 738 EKQK 741 (1041)
Q Consensus 738 EklK 741 (1041)
..|-
T Consensus 1036 ~~l~ 1039 (1164)
T TIGR02169 1036 AELS 1039 (1164)
T ss_pred HHHh
Confidence 5553
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.27 E-value=0.041 Score=70.09 Aligned_cols=98 Identities=23% Similarity=0.352 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhhhhcchhheeeccchhhhHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHH
Q 048767 67 KVSKLENELFEYQYNMGLLLIEKKEWSSKYEELKQTFAEAKD---ALKREQAAHLIAITDVEKREENLRKALGVEKQCVL 143 (1041)
Q Consensus 67 ~iskLE~ElydYQynMGLLLiEkKEwtSk~eel~qa~~ea~~---~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVa 143 (1041)
+.-.|..++..+++- +++.+-..+..+++.+...+...+. .+......+.-.+...+..-+.++..+..-.+++.
T Consensus 214 ~y~~l~~e~~~~~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~ 291 (1163)
T COG1196 214 RYQELKAELRELELA--LLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELL 291 (1163)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666664 4445556667777777777766654 44455555556666666777777777766677777
Q ss_pred hHHHHHHHHHhhhhhhhhcchhh
Q 048767 144 DLEKALREMRSENAEIKFTADSK 166 (1041)
Q Consensus 144 dLEKAL~emr~E~AEiK~tsesK 166 (1041)
.+...+.++-.+.+-++-..+..
T Consensus 292 ~~~~~~~~le~~~~~~~~~~~~~ 314 (1163)
T COG1196 292 ELKEEIEELEGEISLLRERLEEL 314 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776666444433
No 17
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.16 E-value=0.086 Score=69.41 Aligned_cols=415 Identities=20% Similarity=0.283 Sum_probs=228.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHhhhhhhhhcchhhhHHHHHH
Q 048767 94 SKYEELKQTFAEAKDALKREQAAHLIAITDVEKREENLRKALGVEKQCVLDLEKALREMRSENAEIKFTADSKLAEANAL 173 (1041)
Q Consensus 94 Sk~eel~qa~~ea~~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AEiK~tsesKLaEA~aL 173 (1041)
|+..++++.+-..+.+|......|=--..+++.+-+++.+-+.-=..=+..|++-.-.++.+++-.....+.+++++..-
T Consensus 926 s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e 1005 (1822)
T KOG4674|consen 926 SQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSRE 1005 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence 44556667777777888888888888888888888877765544444556677777788888887888888888888888
Q ss_pred HHHHhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhHHHHHHHHHhHHHHHHhhhhhhhHHH---hhhHHHHHHH
Q 048767 174 VTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRESALRMERASFIAEREAYEGTFSQQ---REDLREWERK 250 (1041)
Q Consensus 174 v~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~Q---Re~L~EweKk 250 (1041)
+.++..-...+.... -.+++..+.+-.. |.-++.+...-..-||.++..- .+.|.....-
T Consensus 1006 ~~sl~ne~~~~~~~~-------s~~~~~~~~~k~d----------l~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee 1068 (1822)
T KOG4674|consen 1006 ISSLQNELKSLLKAA-------SQANEQIEDLQND----------LKTETEQLRKAQSKYESELVQHADLTQKLIKLREE 1068 (1822)
T ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776544443332 2233333333332 3333333333333333333221 1223333333
Q ss_pred hhhhhhhhhhhhhhhhhhHHhhhhhHHHHHH----hHHhHHHHHHhHHHhhhhhhhhhhhHHH---HHH--hhhhhHHHH
Q 048767 251 LQDGEERLVKGQRIVNQREEKANEKEKIFKQ----KEKDLEEAQEKIDATNLSLMRKEDDINK---RLA--NLITKEKEY 321 (1041)
Q Consensus 251 Lqe~eerL~~~qr~LNqREe~~~E~~~~l~~----kekeLEe~qkkie~~~~~Lk~keddi~~---rl~--~L~~kEke~ 321 (1041)
+......+.+.....-++..-.-+..+-..- .++++..+.+.|..-....+...+.|.. ..+ +++.-..-.
T Consensus 1069 ~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~ 1148 (1822)
T KOG4674|consen 1069 FAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGL 1148 (1822)
T ss_pred HHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccch
Confidence 3333344444443333333322222222221 2344445555554443333333333222 222 222222221
Q ss_pred HHHHhhhhh--hHHHHHHHHHHHhhhhHHHHHHHHHHhHhhHHhhhhhhhHHHHHHhhch---------HHHHHHHHHHH
Q 048767 322 DAARKSLEM--KEEELRQLEEKLNAREKVEVEKLLDEHKASLDAKQREFDLEIDQKRKAF---------DDDLKSKVVEV 390 (1041)
Q Consensus 322 ~~~~~~Le~--KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~---------deel~~K~~~~ 390 (1041)
..+...+-- +|+++..-+-.+.-+|...+.. +-+.+.....++...|...|.++ +.+|-.++..|
T Consensus 1149 sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~q----q~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~v 1224 (1822)
T KOG4674|consen 1149 SDLQNIVSFLRKEKEIAETKLDTLKRENARLKQ----QVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEV 1224 (1822)
T ss_pred HHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHH
Confidence 122222211 6666666666666666544322 12455555566666666666666 45566666665
Q ss_pred H-HHhh------hhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHHhhhHHHHHH-----------
Q 048767 391 E-KKEA------EINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQ----------- 452 (1041)
Q Consensus 391 e-~rEv------el~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~aeEK~le~ek~~----------- 452 (1041)
. .+|- +..+-..++ +.|..+..++.-.=.-|..-++.|+..=....++=+.|+.+...
T Consensus 1225 Nll~EsN~~LRee~~~~~~k~----qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1225 NLLRESNKVLREENEANLEKI----QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 2222 333333333 44444444444433344444444444433344444444333222
Q ss_pred -HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 453 -LLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKE 531 (1041)
Q Consensus 453 -L~~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKe 531 (1041)
=..|+.++.+++.+|..+...+++....|.+-. .++.++|-++|+..|.+-..+..+.++...|+.-+-
T Consensus 1301 ~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~----------~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~ 1370 (1822)
T KOG4674|consen 1301 YKDSDKNDYEKLKSEISRLKEELEEKENLIAELK----------KELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKT 1370 (1822)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233578888888888888888886666655433 345667788888899999999999999999999999
Q ss_pred HHHHHHHHhHHH
Q 048767 532 NFEKEWEQLDEK 543 (1041)
Q Consensus 532 kFE~EWE~LDEK 543 (1041)
+.+.-|.-+-++
T Consensus 1371 rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1371 RLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHH
Confidence 999999876666
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.14 E-value=0.074 Score=67.84 Aligned_cols=165 Identities=21% Similarity=0.259 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhhhhhcchhheeeccchhhhHHHHHHHHHHHHHHHHH--HHHHHhHH--H---HHHHHHHHHHHHhhhh
Q 048767 65 AEKVSKLENELFEYQYNMGLLLIEKKEWSSKYEELKQTFAEAKDALKR--EQAAHLIA--I---TDVEKREENLRKALGV 137 (1041)
Q Consensus 65 ia~iskLE~ElydYQynMGLLLiEkKEwtSk~eel~qa~~ea~~~lKR--EqaAhl~A--L---sEaeKREEnLkKALgv 137 (1041)
..+..+.+..|-.=+=|+--+=.-..+...+++.|+.....|+..+.- +.-.+-.+ + ......-+.+..+++-
T Consensus 171 ~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 250 (1163)
T COG1196 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSR 250 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788888888888888888999999998888888774432 22222222 2 2222333333333333
Q ss_pred hHHHHHhHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhHHH
Q 048767 138 EKQCVLDLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRES 217 (1041)
Q Consensus 138 EKqCVadLEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~ 217 (1041)
=..=+.++...+.+.-.++. ....++.+...-+...+...+.+-.++...+...+-+..........+.+.+.+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~i~----~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (1163)
T COG1196 251 LEEELEELQEELEEAEKEIE----ELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLE 326 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333333333332222 23345555555555555555555544444444444444445555555555555555
Q ss_pred HHHHHHhHHHHHHhhh
Q 048767 218 ALRMERASFIAEREAY 233 (1041)
Q Consensus 218 ~LrRerlSf~~Erea~ 233 (1041)
.+.-.+..+.++....
T Consensus 327 ~~~~~~~~~~~~~~~~ 342 (1163)
T COG1196 327 ELKEKIEALKEELEER 342 (1163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555444444
No 19
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.08 E-value=0.073 Score=65.72 Aligned_cols=456 Identities=23% Similarity=0.324 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhheeeccchhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHH
Q 048767 62 ESLAEKVSKLENELFEYQYNMGLLLIEKKEWSSKYEELKQTFAEAKDALKREQAAHLIAITDVEKREENLRKALGVEKQC 141 (1041)
Q Consensus 62 ~aLia~iskLE~ElydYQynMGLLLiEkKEwtSk~eel~qa~~ea~~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqC 141 (1041)
..+..-|..|..|| --|..|+-|.-+...-.+-|+.+.. ++-+..-+-|=++-|=-+..|
T Consensus 70 q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~E------------------ 129 (775)
T PF10174_consen 70 QKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRE------------------ 129 (775)
T ss_pred HHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHH------------------
Confidence 34555666677777 6676666666555555555555555 444443222211111111111
Q ss_pred HHhHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhHHHHHHH
Q 048767 142 VLDLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRESALRM 221 (1041)
Q Consensus 142 VadLEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrR 221 (1041)
+..|-+.|-+|...+.-++-+-+..-.+...|.+-++.|-..+ ++..-.+.+.+.+.+.+++-..|+-
T Consensus 130 l~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~------------~~~~~~~~~~~~~~~~e~~~~~le~ 197 (775)
T PF10174_consen 130 LERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSA------------EAEEEDNEALRRIREAEARIMRLES 197 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc------------cchhhhhHHHHHHHHHHHHHHHHHH
Confidence 1224577888888888888888888888888888776665554 1122223344445555554444332
Q ss_pred HHhHHHHHHhhhhhhhHHHhhhHHHHHHHhhhhhhhhh--hhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhhhh
Q 048767 222 ERASFIAEREAYEGTFSQQREDLREWERKLQDGEERLV--KGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLS 299 (1041)
Q Consensus 222 erlSf~~Erea~E~~i~~QRe~L~EweKkLqe~eerL~--~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~~~~~ 299 (1041)
- ++.++.....-|+.| ...++-..+.-. -.|..|...+..|.+..+.+...+-++.-++..++.+..-
T Consensus 198 l-------le~~e~~~~~~r~~l---~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~ 267 (775)
T PF10174_consen 198 L-------LERKEKEHMEAREQL---HRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEAD 267 (775)
T ss_pred H-------HHHHHHHhhhhhHHH---HHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 2 222222222112211 111111111111 3577778888888777777766666666666655444432
Q ss_pred hhhhhhhHHH-HHHhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHH--HHHHHHhHhhHHhh------------
Q 048767 300 LMRKEDDINK-RLANLITKEKEYDAARKSLEMKEEELRQLEEKLNAREKVEV--EKLLDEHKASLDAK------------ 364 (1041)
Q Consensus 300 Lk~keddi~~-rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eI--QkLldeh~a~L~~K------------ 364 (1041)
--...-.+.. +...+..|-+ +|..+..|..+..||..++-+|.....+-. +.=++.-+..|.++
T Consensus 268 r~~~~k~le~~~s~~~~mK~k-~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve 346 (775)
T PF10174_consen 268 RDRLDKQLEVYKSHSLAMKSK-MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVE 346 (775)
T ss_pred hHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 1111111111 2233333333 566666777777777777777766554222 11122112222222
Q ss_pred -----hhhhhHHHHHHhhchHH----------HHHHHHHHHHHHhhh-------hhhhHHHHHHHHHHHHHHHHHHHh--
Q 048767 365 -----QREFDLEIDQKRKAFDD----------DLKSKVVEVEKKEAE-------INHKEEKIAKREMALEKRLEKCKD-- 420 (1041)
Q Consensus 365 -----k~eFElElE~kRKs~de----------el~~K~~~~e~rEve-------l~h~Eekl~krEqaLe~k~~~lke-- 420 (1041)
.-+-..-++++.+++.. ||.-...-++..+.. |...++.+.++...|+.-..+|..
T Consensus 347 ~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~ 426 (775)
T PF10174_consen 347 ALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQA 426 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11112222333322221 121122222222222 333445555555555555555551
Q ss_pred ---hhhhHHHHH-hhhhhhhhhhhhHHhhhHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 048767 421 ---KEKDVESKL-KDLNGREKTMKSEEKNLETEKKQLLAD-KEDILTEKAELEKIRDANEQQLLKIYEEK---------- 485 (1041)
Q Consensus 421 ---KEkdl~~K~-k~LkEkEksL~aeEK~le~ek~~L~~d-keei~~lK~elEK~~a~~e~q~~qi~ee~---------- 485 (1041)
......+++ .++.++++.+.... ........+ .+++..++.++...++.++.=...+++..
T Consensus 427 d~~~~~~~~~~lEea~~eker~~e~l~----e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~ 502 (775)
T PF10174_consen 427 DSSNEDEALETLEEALREKERLQERLE----EQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEA 502 (775)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHH
Confidence 111111111 23333333332211 011111111 23444444444444443333322222222
Q ss_pred --------------hhhccc-HHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 486 --------------NQLRIS-EEERAEYLRLQSELKE----------------QIGKCRLQEEMLLKEAEDLKQQKENFE 534 (1041)
Q Consensus 486 --------------e~Lkit-eeER~E~l~LqseLKe----------------EId~~R~Qke~L~kEae~Lk~eKekFE 534 (1041)
++|.|- +.-|.+|..|+++|+. ++.-++.....-..|+|+|-.-..+-|
T Consensus 503 s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E 582 (775)
T PF10174_consen 503 SKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAE 582 (775)
T ss_pred HHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 2234555555555543 444455555666788888888888888
Q ss_pred HHHHHhHHHHHHHHHHHHH----HHHHHHHHHHH
Q 048767 535 KEWEQLDEKRAEVEKELKK----ISEQTEKLEKE 564 (1041)
Q Consensus 535 ~EWE~LDEKR~el~KE~~~----I~eere~le~~ 564 (1041)
.|=..++-|-.+|.++++. ++...+.....
T Consensus 583 ~EK~~ke~ki~~LekeLek~~~~~~~~~~~~~~~ 616 (775)
T PF10174_consen 583 NEKNDKEKKIGELEKELEKAQMHLAKQQETVEAT 616 (775)
T ss_pred HHHHhHHHHHHHHHHHHHHhccchhhhhhhhhhh
Confidence 8888888899999999755 55555555543
No 20
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.91 E-value=0.15 Score=63.50 Aligned_cols=66 Identities=24% Similarity=0.321 Sum_probs=33.7
Q ss_pred hhHHHHhhhcchHHhhhhhhhhhHHHHHHHHHhHHHHHHhhhhhhhHHHhhhHHHHHHHhhhhhhhh
Q 048767 192 DAKVAEINRKSSEIERKSHELESRESALRMERASFIAEREAYEGTFSQQREDLREWERKLQDGEERL 258 (1041)
Q Consensus 192 eaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqe~eerL 258 (1041)
...++++.+....+..++..++.....+......+.. +.+....+...++.|..|...+...++.+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 338 (908)
T COG0419 273 EEELRELERLLEELEEKIERLEELEREIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKL 338 (908)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666655554444443 44444444444444444444444333333
No 21
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.21 Score=62.16 Aligned_cols=14 Identities=43% Similarity=0.686 Sum_probs=9.5
Q ss_pred HHHHHHHHhhhhhH
Q 048767 126 KREENLRKALGVEK 139 (1041)
Q Consensus 126 KREEnLkKALgvEK 139 (1041)
-|.+=|.+.+|+++
T Consensus 155 er~~il~~l~~l~~ 168 (908)
T COG0419 155 ERKEILDELFGLEK 168 (908)
T ss_pred HHHHHHHHHhCchh
Confidence 35666777777776
No 22
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.75 E-value=0.25 Score=61.17 Aligned_cols=471 Identities=20% Similarity=0.285 Sum_probs=257.6
Q ss_pred HHHHHhhhhhhhhcchhhhHHHHHHHHHHhh-hhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhHHHHHHHHHhHHH
Q 048767 149 LREMRSENAEIKFTADSKLAEANALVTSIEE-KSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRESALRMERASFI 227 (1041)
Q Consensus 149 L~emr~E~AEiK~tsesKLaEA~aLv~~~ee-KslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~ 227 (1041)
|+.++.|+--.+--.|.+.+++++.+.+|.+ =|-+++.----++---|++++-.+++...- -+--.+-
T Consensus 5 l~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q-----------~e~q~~~ 73 (775)
T PF10174_consen 5 LERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQ-----------EENQKAQ 73 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHH-----------hhHHHHH
Confidence 5678888888999999999999999999977 223332211111212233333332221111 1111333
Q ss_pred HHHhhhhhhhHHHhhhHHHHHHHhhhhh----------hhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhh
Q 048767 228 AEREAYEGTFSQQREDLREWERKLQDGE----------ERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATN 297 (1041)
Q Consensus 228 ~Erea~E~~i~~QRe~L~EweKkLqe~e----------erL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~~~ 297 (1041)
.+..++...+ +--.+++-..-.+.... -..-...|+--.|+..+.+.+. ....|++++-.|+.-.
T Consensus 74 ~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~----lr~~lE~~q~~~e~~q 148 (775)
T PF10174_consen 74 EEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELER----LRKTLEELQLRIETQQ 148 (775)
T ss_pred HHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4444444444 22222221111111111 1112233333456655555443 3346666666666665
Q ss_pred hhhhhhhhhHHHHHH--------------------hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhh-----hh---HHH
Q 048767 298 LSLMRKEDDINKRLA--------------------NLITKEKEYDAARKSLEMKEEELRQLEEKLNA-----RE---KVE 349 (1041)
Q Consensus 298 ~~Lk~keddi~~rl~--------------------~L~~kEke~~~~~~~Le~KEkeLl~leEKL~a-----RE---~~e 349 (1041)
.+|-...+.|..=+. .+.-.|-.+..++..|+.+|++...+-+.|-- +. ...
T Consensus 149 ~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~a 228 (775)
T PF10174_consen 149 QTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEA 228 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHH
Confidence 555444444433333 33344555666777788888888665333322 11 224
Q ss_pred HHHHHHHhHh---hHHhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 048767 350 VEKLLDEHKA---SLDAKQREFDLEIDQKRKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVE 426 (1041)
Q Consensus 350 IQkLldeh~a---~L~~Kk~eFElElE~kRKs~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~ 426 (1041)
+|++|+.-.+ .|+.-.+..|.|+...+..++---. -++-..++++.........|.. ++.-.=.|..+.-.+.
T Consensus 229 lq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~--~r~~~~k~le~~~s~~~~mK~k--~d~~~~eL~rk~~E~~ 304 (775)
T PF10174_consen 229 LQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEA--DRDRLDKQLEVYKSHSLAMKSK--MDRLKLELSRKKSELE 304 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc--chHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 6888765433 2333344456666666554432111 1333334445444444444422 4444445556666666
Q ss_pred HHHhhhhhhhhhhhhHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Q 048767 427 SKLKDLNGREKTMKSEEKNLETEKKQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELK 506 (1041)
Q Consensus 427 ~K~k~LkEkEksL~aeEK~le~ek~~L~~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLK 506 (1041)
+...-|.-....-......|+.-+..|-+--.....|..|++-++..++..-.++...+..+..+++|.+-+..==.+|+
T Consensus 305 ~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~ 384 (775)
T PF10174_consen 305 ALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLR 384 (775)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666667777888888888888889999999999999999999999999999999998776654445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------------HHHHHHHHHHHHHHHHhhhHHHHhHH
Q 048767 507 EQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVE------------KELKKISEQTEKLEKEKLSEEERIKR 574 (1041)
Q Consensus 507 eEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~------------KE~~~I~eere~le~~~~~E~erLK~ 574 (1041)
..+|.+=.....|.+.+|.|...-..=+ ..|++-++.|. -.++.-.-+++.+-.-+...+++.-.
T Consensus 385 d~~d~~e~ki~~Lq~kie~Lee~l~ekd---~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~ 461 (775)
T PF10174_consen 385 DMLDKKERKINVLQKKIENLEEQLREKD---RQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEK 461 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666555543322111 11222222222 22222223333333333333333333
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHhhHhhhhHHHHHHHHHHHHHhhHHHHhhhh---hHhHHHHHHHHHHH
Q 048767 575 DKQLAEDHIKREWEALEVAKESFKATMDHEQSMITEKAESERRQLLHDFELQKRK---LESDMQNRQEELEK 643 (1041)
Q Consensus 575 Ek~~~~~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkre---Le~~~~~rqEE~E~ 643 (1041)
++..--+.|++++..+...-++|-..+ ||+..-+.-++.+-+.|.-+.+-+..+ |++.+++..+++++
T Consensus 462 e~~Eele~~~~e~~~lk~~~~~LQ~eL-sEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~k 532 (775)
T PF10174_consen 462 ERQEELETYQKELKELKAKLESLQKEL-SEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEK 532 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHH
Confidence 333333567777777777777776555 577766666666666666655555444 34566666665553
No 23
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.73 E-value=0.21 Score=59.68 Aligned_cols=89 Identities=22% Similarity=0.314 Sum_probs=51.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh-----------cHHHHHHHhHHHHHHHH
Q 048767 656 KERELSNINYLRDIARKEMEEMKLERLKLEKEKQEVDSHRKHLEGEQVGIRK-----------DIDMLVGLTKMLKEQRE 724 (1041)
Q Consensus 656 k~~EL~~In~lke~a~kE~E~v~lE~~rLekEr~Ei~~~ke~le~e~~em~k-----------dIeeL~~ls~KLk~QRE 724 (1041)
...||..+..+++..-.++-...++.-.|..--.+..+.-+.-..+|+.++. -|..|..--..+.+.=.
T Consensus 309 L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lq 388 (546)
T PF07888_consen 309 LRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQ 388 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4578899999998888888877777666654444443333333334433332 24444433333333322
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 048767 725 QIVKERDRFLNFVEKQKKCE 744 (1041)
Q Consensus 725 ~~~~eRe~f~~~vEklK~ck 744 (1041)
.=.++|..+-..+-+.+.|.
T Consensus 389 Eer~E~qkL~~ql~ke~D~n 408 (546)
T PF07888_consen 389 EERMERQKLEKQLGKEKDCN 408 (546)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 33457777878777776555
No 24
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.46 E-value=2.7e-05 Score=95.45 Aligned_cols=510 Identities=24% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHH-------Hhhhhchh
Q 048767 120 AITDVEKREENLRKALGVEKQCVLDLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEV-------EVKLRSVD 192 (1041)
Q Consensus 120 ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEv-------E~KL~aAe 192 (1041)
.|-+..-|=+.|.--|..|++--+--||+-++|..|..+++---+-......+.++-.-++-.|+ |.--.+-+
T Consensus 40 ~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e 119 (859)
T PF01576_consen 40 KIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHE 119 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666777777777777888888888888777555555544444443333332222 22234456
Q ss_pred hHHHHhhhcchHHhhhhh----hhhhHHHHHHHHHhHHHHHHhhhhhhhHHHhhhHHHHHHHhhhhhhhhhhhhhhhhhh
Q 048767 193 AKVAEINRKSSEIERKSH----ELESRESALRMERASFIAEREAYEGTFSQQREDLREWERKLQDGEERLVKGQRIVNQR 268 (1041)
Q Consensus 193 aklAEa~Rk~s~aeRKL~----eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqe~eerL~~~qr~LNqR 268 (1041)
+.++++-++|+.+--.|. .+.---..|-+.+..|..|.+....++..-=..-..-++.....+.-|.+.+.-+..-
T Consensus 120 ~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~ 199 (859)
T PF01576_consen 120 ATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEES 199 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 777788888865533322 2222223344444444444444444443333333445666666677777777666666
Q ss_pred HHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHH
Q 048767 269 EEKANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKEDDINKRLANLITKEKEYDAARKSLEMKEEELRQLEEKLNAREKV 348 (1041)
Q Consensus 269 Ee~~~E~~~~l~~kekeLEe~qkkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~ 348 (1041)
+..+++......+.+.++.++...++.....+ ..|+ + ....-+..|..+...|..
T Consensus 200 er~~~el~~~k~kL~~E~~eL~~qLee~e~~~-----------~~l~-r---------~k~~L~~qLeelk~~lee---- 254 (859)
T PF01576_consen 200 ERQRNELTEQKAKLQSENSELTRQLEEAESQL-----------SQLQ-R---------EKSSLESQLEELKRQLEE---- 254 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH-H---------HHHHHHHHHHhhHHHHHh----
Confidence 66666666666666666666555554443333 2221 0 001112233333333221
Q ss_pred HHHHHHHHhHhhHHhhhhhhhHHHHHHhhchHHHHHHHHHH---HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 048767 349 EVEKLLDEHKASLDAKQREFDLEIDQKRKAFDDDLKSKVVE---VEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDV 425 (1041)
Q Consensus 349 eIQkLldeh~a~L~~Kk~eFElElE~kRKs~deel~~K~~~---~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl 425 (1041)
++. .+..|..+.+..+.+++..|..++++-.+|... +..-..+|..|-.++ +.....+.+.|.+--+.|
T Consensus 255 Etr-----~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~---e~e~~~~~EelEeaKKkL 326 (859)
T PF01576_consen 255 ETR-----AKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKY---EEEAEQRTEELEEAKKKL 326 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hhh-----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHH---HHHhhhhHHHHHHHHHHH
Confidence 111 235677788888888888888888888776542 233344444443332 334444555666666777
Q ss_pred HHHHhhhhhhhhhhhhHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhcccHHHHHHHHHHH
Q 048767 426 ESKLKDLNGREKTMKSEEKNLETEKKQLLADKEDILTEKAELEKIRD---ANEQQLLKIYEEKNQLRISEEERAEYLRLQ 502 (1041)
Q Consensus 426 ~~K~k~LkEkEksL~aeEK~le~ek~~L~~dkeei~~lK~elEK~~a---~~e~q~~qi~ee~e~LkiteeER~E~l~Lq 502 (1041)
..++..+.+.-..+.+.--.|+.-+..|..+-+++.. +|++..+ .++....+++.....++ .. .
T Consensus 327 ~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~---eLe~~~~~~~~LeKKqr~fDk~l~e~k------~~----~ 393 (859)
T PF01576_consen 327 ERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTS---ELEKAQAAAAELEKKQRKFDKQLAEWK------AK----V 393 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHH------HH----H
Confidence 7788888887777888888888888888887776654 4554443 55666666664433322 22 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 048767 503 SELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEERIKRDKQLAEDH 582 (1041)
Q Consensus 503 seLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~erLK~Ek~~~~~~ 582 (1041)
..+..+.|.+-.....+..++-.|+.+.......++.|.-....|+-|+.++..+.-...+-+ .+-++.+. .
T Consensus 394 ~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v-~eLek~kr-------~ 465 (859)
T PF01576_consen 394 EELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSV-HELEKAKR-------R 465 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccch-HHHHHHHH-------H
Confidence 345566777777777788888888888888888888887777788888777765543333222 11111111 1
Q ss_pred HHHhHHHHHHhHHHHHHhhHhhhhHHHHHHHHHHHHHhhHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048767 583 IKREWEALEVAKESFKATMDHEQSMITEKAESERRQLLHDFELQKRKLESDMQNRQEELEKDLKEKERLFEEEKERELSN 662 (1041)
Q Consensus 583 ~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLe~~~~~rqEE~E~~L~EREk~FEeek~~EL~~ 662 (1041)
+..+++.|..+=+.-. +-+...|..+.-|+..|+.-+-++++.|.+|+..|+..+..=.-.
T Consensus 466 LE~e~~El~~~leE~E-------------------~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~ 526 (859)
T PF01576_consen 466 LEQEKEELQEQLEEAE-------------------DALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQ 526 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHH
Confidence 1111111111111111 222345566777888899999999999999999999877654444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcHHHHH
Q 048767 663 INYLRDIARKEMEEMKLERLKLEKEKQEVDSHRKHLEGEQVGIRKDIDMLV 713 (1041)
Q Consensus 663 In~lke~a~kE~E~v~lE~~rLekEr~Ei~~~ke~le~e~~em~kdIeeL~ 713 (1041)
|-.|..-+..| -+.|.++.-.|++|+.+..+|.-.++..+
T Consensus 527 l~~le~~LE~E-----------~k~r~~~~r~kkKLE~~l~eLe~~ld~~n 566 (859)
T PF01576_consen 527 LESLEAELEEE-----------RKERAEALREKKKLESDLNELEIQLDHAN 566 (859)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44433333222 23344555555556555555544444433
No 25
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.37 E-value=0.6 Score=55.98 Aligned_cols=41 Identities=17% Similarity=0.405 Sum_probs=37.9
Q ss_pred hhhhhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 048767 700 GEQVGIRKDIDMLVGLTKMLKEQREQIVKERDRFLNFVEKQ 740 (1041)
Q Consensus 700 ~e~~em~kdIeeL~~ls~KLk~QRE~~~~eRe~f~~~vEkl 740 (1041)
=+.+|-++.|.+|+.-=+-+++-.|+|..++..++..|+.|
T Consensus 410 vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~L 450 (546)
T PF07888_consen 410 VQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERL 450 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999988
No 26
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.49 Score=58.27 Aligned_cols=209 Identities=26% Similarity=0.397 Sum_probs=114.3
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHhhh---hhh--hHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHhhhhhhhhhhhhHH
Q 048767 370 LEIDQKRKAFDDDLKSKVVEVEKKEAE---INH--KEEKIAKREMALEKRLEKCKDKEKDVE-SKLKDLNGREKTMKSEE 443 (1041)
Q Consensus 370 lElE~kRKs~deel~~K~~~~e~rEve---l~h--~Eekl~krEqaLe~k~~~lkeKEkdl~-~K~k~LkEkEksL~aeE 443 (1041)
+|||.+|+.+++.-...+.+++++|.+ -+. +-++=.|++-+|++++++--+.|..-+ .+-+.+..+|-.-+-.|
T Consensus 327 aELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElE 406 (1118)
T KOG1029|consen 327 AELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELE 406 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554444444444432 122 223334556667777777666654332 22233333332222222
Q ss_pred hh--hHHH-------HHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Q 048767 444 KN--LETE-------KKQLLADKEDILTEKA---ELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGK 511 (1041)
Q Consensus 444 K~--le~e-------k~~L~~dkeei~~lK~---elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~ 511 (1041)
|. |+-+ .+|...+.+.|-.+++ .++--+..|..++.++..-....++- -..-|++|+.
T Consensus 407 kqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~----------~tt~kt~ie~ 476 (1118)
T KOG1029|consen 407 KQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVD----------ITTQKTEIEE 476 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheec----------cchHHHHHHH
Confidence 21 1111 1222233333333322 33333444444555544433322211 1245889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh-------------hhHHHHhHHHHHH
Q 048767 512 CRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEK-------------LSEEERIKRDKQL 578 (1041)
Q Consensus 512 ~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~~-------------~~E~erLK~Ek~~ 578 (1041)
++-|.+..+.|.+.|+++.. +++.-+.+++-|+..|..-+ +++-+++...|+.
T Consensus 477 ~~~q~e~~isei~qlqarik--------------E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~ 542 (1118)
T KOG1029|consen 477 VTKQRELMISEIDQLQARIK--------------ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKEL 542 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHH
Confidence 99999999999999988754 33444444444444443322 4677788888999
Q ss_pred HHHHHHHhHHHHHHhHHHHHHhhH
Q 048767 579 AEDHIKREWEALEVAKESFKATMD 602 (1041)
Q Consensus 579 ~~~~~krelE~L~~ekEsF~~~M~ 602 (1041)
++.+|+..++.|+-+.+|=.+.|.
T Consensus 543 irq~ikdqldelskE~esk~~eid 566 (1118)
T KOG1029|consen 543 IRQAIKDQLDELSKETESKLNEID 566 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999988888777776
No 27
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.94 E-value=1.6 Score=55.73 Aligned_cols=118 Identities=24% Similarity=0.293 Sum_probs=74.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 048767 447 ETEKKQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQI-GKCRLQEEMLLKEAED 525 (1041)
Q Consensus 447 e~ek~~L~~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEI-d~~R~Qke~L~kEae~ 525 (1041)
..-+..-....++|..++.++...+-...+-+.+|++.+.++...+.+...+-+.=..++.+. ..+-.+..++..+.+.
T Consensus 326 ~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~ 405 (1074)
T KOG0250|consen 326 GELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQ 405 (1074)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 333333444556666666666666666666666677777776666666666666555555555 5555556666666667
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 526 LKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKE 564 (1041)
Q Consensus 526 Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~ 564 (1041)
|+++.++|+-.-..|-++..++..++..+-+++..++.-
T Consensus 406 L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~ 444 (1074)
T KOG0250|consen 406 LKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGE 444 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 777777777766677777777777776666666655433
No 28
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.90 E-value=0.00023 Score=87.52 Aligned_cols=309 Identities=24% Similarity=0.326 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHHHHhhhhh-------cchhheeeccchhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048767 58 ADDVESLAEKVSKLENELFEYQY-------NMGLLLIEKKEWSSKYEELKQTFAEAKDALKREQAAHLIAITDVEKREEN 130 (1041)
Q Consensus 58 ~~D~~aLia~iskLE~ElydYQy-------nMGLLLiEkKEwtSk~eel~qa~~ea~~~lKREqaAhl~ALsEaeKREEn 130 (1041)
++....|.....+|++|+-++.. ..+-|--.+.-|.+..++++..+.+- .+.+.+-...+..++.-=+.
T Consensus 200 er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeE----tr~k~~L~~~l~~le~e~~~ 275 (859)
T PF01576_consen 200 ERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEE----TRAKQALEKQLRQLEHELEQ 275 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH----hhhhhhhHHHHHHHHHHHHH
Confidence 36666777777777777666554 44445455566666666666555442 12222223345555666678
Q ss_pred HHHhhhhhHHHHHhHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhh
Q 048767 131 LRKALGVEKQCVLDLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSH 210 (1041)
Q Consensus 131 LkKALgvEKqCVadLEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~ 210 (1041)
|+..|.-+-.+...|++.|.-+..+++.+|--++.=.. ..+..+++=---...+|..+..-+-+++.+.+.+++.-+
T Consensus 276 L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~---~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~ 352 (859)
T PF01576_consen 276 LREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAE---QRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKK 352 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876665333 333333332222345666666666666666666666665
Q ss_pred hhhhHHHHHHHHHhHHHHHHhhhhhhhHHHhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHH
Q 048767 211 ELESRESALRMERASFIAEREAYEGTFSQQREDLREWERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQ 290 (1041)
Q Consensus 211 eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqe~eerL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~q 290 (1041)
-+..=-.+|.-+.-.-.+-+...++...+.-..|.+|..++.+....+-..++-....+-.++. ....|+++.
T Consensus 353 rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~-------Lk~~lee~~ 425 (859)
T PF01576_consen 353 RLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFK-------LKNELEELQ 425 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHhhhHHHH
Confidence 5555555555555556666777777766777888999998887777777777666666655554 455555555
Q ss_pred HhHHHhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHhHhhH---Hhhhhh
Q 048767 291 EKIDATNLSLMRKEDDINKRLANLITKEKEYDAARKSLEMKEEELRQLEEKLNAREKVEVEKLLDEHKASL---DAKQRE 367 (1041)
Q Consensus 291 kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L---~~Kk~e 367 (1041)
-.++......+...++|.-=...+..-.+.+..+. +....|+. +..+++.-|++.+..| +.++.-
T Consensus 426 e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLe-------k~kr~LE~-----e~~El~~~leE~E~~l~~~E~~~lR 493 (859)
T PF01576_consen 426 EQLEELERENKQLQDELEDLTSQLDDAGKSVHELE-------KAKRRLEQ-----EKEELQEQLEEAEDALEAEEQKKLR 493 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhccchHHHH-------HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554443333333333322222222222222222 22222222 2345555566655554 456788
Q ss_pred hhHHHHHHhhchHHHHHHHHHHHHH
Q 048767 368 FDLEIDQKRKAFDDDLKSKVVEVEK 392 (1041)
Q Consensus 368 FElElE~kRKs~deel~~K~~~~e~ 392 (1041)
|+++|.+.|.-++-+|..|-.+++.
T Consensus 494 l~~el~~~r~e~er~l~eKeeE~E~ 518 (859)
T PF01576_consen 494 LQVELQQLRQEIERELQEKEEEFEE 518 (859)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 8888888888888777777666554
No 29
>PRK11637 AmiB activator; Provisional
Probab=96.45 E-value=2.5 Score=48.64 Aligned_cols=26 Identities=8% Similarity=0.162 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHhhHHHHhhhhhH
Q 048767 606 SMITEKAESERRQLLHDFELQKRKLE 631 (1041)
Q Consensus 606 s~~~ek~q~Erad~l~d~E~qkreLe 631 (1041)
..++..+..-+.+++.+|.-.+..|+
T Consensus 158 ~~~l~~i~~~d~~~l~~l~~~~~~L~ 183 (428)
T PRK11637 158 LAYFGYLNQARQETIAELKQTREELA 183 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777776666665
No 30
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.45 E-value=0.63 Score=49.73 Aligned_cols=94 Identities=29% Similarity=0.456 Sum_probs=54.7
Q ss_pred HHHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhhhhhhhhHH---HHHHhhhhhHHHHHHH
Q 048767 248 ERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKEDDIN---KRLANLITKEKEYDAA 324 (1041)
Q Consensus 248 eKkLqe~eerL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~~~~~Lk~keddi~---~rl~~L~~kEke~~~~ 324 (1041)
.-++.+.+.+|-.....+..-+.+.-+..+-|...+.+|+.+...++..-..++..+..|. ..|.+|-..+..+..+
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~r 170 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASER 170 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 3455555666666666666666666666677777777777777777777777766666643 3344444444433333
Q ss_pred HhhhhhhHHHHHHHHHHHhh
Q 048767 325 RKSLEMKEEELRQLEEKLNA 344 (1041)
Q Consensus 325 ~~~Le~KEkeLl~leEKL~a 344 (1041)
. +.-|..+..|..+|..
T Consensus 171 e---~~~e~~i~~L~~~lke 187 (237)
T PF00261_consen 171 E---DEYEEKIRDLEEKLKE 187 (237)
T ss_dssp H---HHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHH
Confidence 2 3344445555555543
No 31
>PRK11637 AmiB activator; Provisional
Probab=96.35 E-value=1.2 Score=51.13 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=24.9
Q ss_pred HHHHhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHhH
Q 048767 309 KRLANLITKEKEYDAARKSLEMKEEELRQLEEKLNAREKVEVEKLLDEHK 358 (1041)
Q Consensus 309 ~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~ 358 (1041)
..-..|...+.++..+...+...+.+|..++.+|..+...-=+.+-.-+.
T Consensus 86 ~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 86 QASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555555556666666655555443333433333
No 32
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.28 E-value=5.7 Score=51.02 Aligned_cols=169 Identities=20% Similarity=0.281 Sum_probs=108.6
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHh
Q 048767 376 RKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQLLA 455 (1041)
Q Consensus 376 RKs~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~aeEK~le~ek~~L~~ 455 (1041)
-..+.+.|+.+...++--...++..|.++++.--..+.+.+.+...-++|++ -+.....
T Consensus 297 ~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~---------------------~~re~~~ 355 (1074)
T KOG0250|consen 297 VDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDD---------------------LRREVND 355 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---------------------HHHHHHH
Confidence 3444444444444444444444445555554444444444444444444444 3333334
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 456 DKEDILTEKAELEKIRDANEQQLLKIYEEKNQL-RISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFE 534 (1041)
Q Consensus 456 dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~L-kiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE 534 (1041)
-++++...-..+.+.+.....-..+|....+.+ .-+..++.+..---..|++||+++..|...|-.|.++++..-..=+
T Consensus 356 ~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ 435 (1074)
T KOG0250|consen 356 LKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEE 435 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444444555555555555555556666666655 6667777777666678899999999999999999999999888888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048767 535 KEWEQLDEKRAEVEKELKKISEQTEKLEKEK 565 (1041)
Q Consensus 535 ~EWE~LDEKR~el~KE~~~I~eere~le~~~ 565 (1041)
.|-+.+..+...|.+-...++.+=..|.+.+
T Consensus 436 ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k 466 (1074)
T KOG0250|consen 436 EEKEHIEGEILQLRKKIENISEELKDLKKTK 466 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888888888888888888886655555544
No 33
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.22 E-value=2.4 Score=46.12 Aligned_cols=138 Identities=22% Similarity=0.311 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhcccH-HHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 048767 456 DKEDILTEKAEL----EKIRDANEQQLLKIYEEKNQLRISE-EERA-EYLRLQS---ELKEQIGKCRLQEEMLLKEAEDL 526 (1041)
Q Consensus 456 dkeei~~lK~el----EK~~a~~e~q~~qi~ee~e~Lkite-eER~-E~l~Lqs---eLKeEId~~R~Qke~L~kEae~L 526 (1041)
+|++|..|+.-+ ++.+ +++.+-..+......+.... ...+ -...++. .|...|+.+-.++--|.-+.+.|
T Consensus 2 EK~eL~~LNdRla~YIekVr-~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l 80 (312)
T PF00038_consen 2 EKEELQSLNDRLASYIEKVR-FLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNL 80 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhH
Confidence 566666665543 3333 34444444555555555442 2221 2222333 34477777777777777788888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHhHHHHHHHHHHHHHhHHHHHHhH
Q 048767 527 KQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKE---KLSEEERIKRDKQLAEDHIKREWEALEVAK 594 (1041)
Q Consensus 527 k~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~---~~~E~erLK~Ek~~~~~~~krelE~L~~ek 594 (1041)
+.+...|...|+..-..+..++.+...+...-...... +.+.-..|+.+..-++..|..++..|...-
T Consensus 81 ~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 81 KEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 88888888888887777777776666555333332222 345567777777778888888777777654
No 34
>PRK12704 phosphodiesterase; Provisional
Probab=96.21 E-value=0.16 Score=60.23 Aligned_cols=76 Identities=26% Similarity=0.523 Sum_probs=43.9
Q ss_pred hhhhhHHHHHHhhchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHHh
Q 048767 365 QREFDLEIDQKRKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEK 444 (1041)
Q Consensus 365 k~eFElElE~kRKs~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~aeEK 444 (1041)
+.+++.|+...|..++.++... +.+|..+|..|.+|+..|+.+.+.|..++++|..+-+.|..+++.|...++
T Consensus 59 ~leaeeE~~~~R~Ele~e~~~~-------e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~ 131 (520)
T PRK12704 59 LLEAKEEIHKLRNEFEKELRER-------RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555444433 444555566666777777777766666666666666666665555554444
Q ss_pred hhH
Q 048767 445 NLE 447 (1041)
Q Consensus 445 ~le 447 (1041)
+++
T Consensus 132 ~~~ 134 (520)
T PRK12704 132 ELE 134 (520)
T ss_pred HHH
Confidence 333
No 35
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.00 E-value=8.2 Score=50.28 Aligned_cols=65 Identities=20% Similarity=0.296 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHh
Q 048767 122 TDVEKREENLRKALGVEKQCVLDLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEV 186 (1041)
Q Consensus 122 sEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~ 186 (1041)
.-++.+...++..+.--..=...|.....+.+.++..-+-...+.|+..+.-+..|+.+...-+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~ 341 (1201)
T PF12128_consen 277 QQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYED 341 (1201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555566777777777777777778888888888888888777766543
No 36
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.97 E-value=2.9 Score=44.78 Aligned_cols=219 Identities=22% Similarity=0.321 Sum_probs=101.4
Q ss_pred HHHHhhhcchHHhhhhhhhhhHHHHHHHHHhHHHHHHhhhhhhhHHHhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHhhh
Q 048767 194 KVAEINRKSSEIERKSHELESRESALRMERASFIAEREAYEGTFSQQREDLREWERKLQDGEERLVKGQRIVNQREEKAN 273 (1041)
Q Consensus 194 klAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqe~eerL~~~qr~LNqREe~~~ 273 (1041)
.+..+..+-..+...+..+|+.-..|.|..-....+.+..+..+..- ..+|...+.++-+..+.+..=|.+..
T Consensus 16 ~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~-------~~kL~~~e~~~de~er~~k~lE~r~~ 88 (237)
T PF00261_consen 16 RLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEA-------TEKLEEAEKRADESERARKVLENREQ 88 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHH-------HHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33333333334445555566666666666555555555444444333 33444444444444444444444444
Q ss_pred hhHHHHHHhHHhHHHHHHhHHHhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHH
Q 048767 274 EKEKIFKQKEKDLEEAQEKIDATNLSLMRKEDDINKRLANLITKEKEYDAARKSLEMKEEELRQLEEKLNAREKVEVEKL 353 (1041)
Q Consensus 274 E~~~~l~~kekeLEe~qkkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkL 353 (1041)
..+.-+...+..|.++....+.+-..+.+-.-.+..--..|.--|.-++...+.+...|.+|..+-..|-+=|-.+.
T Consensus 89 ~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~--- 165 (237)
T PF00261_consen 89 SDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEE--- 165 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhh---
Confidence 44444555555555555544444444433322222222333333444444444444444444444444433222111
Q ss_pred HHHhHhhHHhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Q 048767 354 LDEHKASLDAKQREFDLEIDQKRKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDL 432 (1041)
Q Consensus 354 ldeh~a~L~~Kk~eFElElE~kRKs~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~L 432 (1041)
....+--.||-. =+.|..-|..=..-++--|..+...|..|..-+-.|..-..+.+....+|+.-+..|
T Consensus 166 ------~~~~re~~~e~~----i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 166 ------KASEREDEYEEK----IRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp ------HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ------hhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111122222 233333333333344455556666666666666677766677777777776666554
No 37
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.77 E-value=9.5 Score=49.16 Aligned_cols=107 Identities=29% Similarity=0.419 Sum_probs=71.5
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHhhhH
Q 048767 495 RAEYLRLQ---SELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTE---KLEKEKLSE 568 (1041)
Q Consensus 495 R~E~l~Lq---seLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere---~le~~~~~E 568 (1041)
|-+|+... +.++..|...........+.+..++..-++|+++|..++-+++...+|.+.+...|- ++..-...|
T Consensus 288 rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~e 367 (1141)
T KOG0018|consen 288 RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEE 367 (1141)
T ss_pred hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHH
Confidence 65665322 123333444444455566777889999999999999999999999999999887554 455555567
Q ss_pred HHHhHHHHHHHHHHHHHhHHHHHHhHHHHHHhhHhh
Q 048767 569 EERIKRDKQLAEDHIKREWEALEVAKESFKATMDHE 604 (1041)
Q Consensus 569 ~erLK~Ek~~~~~~~krelE~L~~ekEsF~~~M~hE 604 (1041)
.++|+.+-...- ..+|+.|.+...+=-++..|+
T Consensus 368 y~rlk~ea~~~~---~~el~~ln~~~r~~~~~ld~~ 400 (1141)
T KOG0018|consen 368 YERLKEEACKEA---LEELEVLNRNMRSDQDTLDHE 400 (1141)
T ss_pred HHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHhhH
Confidence 778877654433 666666666655544444443
No 38
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.72 E-value=0.36 Score=57.26 Aligned_cols=72 Identities=28% Similarity=0.507 Sum_probs=40.6
Q ss_pred hhhhhHHHHHHhhchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHH
Q 048767 365 QREFDLEIDQKRKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEE 443 (1041)
Q Consensus 365 k~eFElElE~kRKs~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~aeE 443 (1041)
+.+++-|+..+|..++.+++.+ +.+|..+|..|.+|+..|+.+.+.|..+++.|+.+.+.|..+++.|....
T Consensus 53 ~~EaeeE~~~~R~Ele~el~~~-------e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~ 124 (514)
T TIGR03319 53 LLEAKEEVHKLRAELERELKER-------RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKE 124 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555565555554443 44455555566666666666666666666666666655555555554444
No 39
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.56 E-value=3.2 Score=46.46 Aligned_cols=166 Identities=19% Similarity=0.235 Sum_probs=116.8
Q ss_pred HHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 048767 411 LEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRI 490 (1041)
Q Consensus 411 Le~k~~~lkeKEkdl~~K~k~LkEkEksL~aeEK~le~ek~~L~~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~Lki 490 (1041)
+=+...++..|..=++=+++-+..--..|...-..|......|.+..+.+..+...+....+.+..+...+...... +
T Consensus 126 ~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e--~ 203 (325)
T PF08317_consen 126 LVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE--I 203 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h
Confidence 34445555566666666666666665555555555555555555555555555555555555555555555444333 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 048767 491 SEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEE 570 (1041)
Q Consensus 491 teeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~e 570 (1041)
..-+..++. .||++|.....+-..+-++.++|+.++..-...++.+.+++.++..+.......++....|=..|-.
T Consensus 204 ~~~D~~eL~----~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~ 279 (325)
T PF08317_consen 204 ESCDQEELE----ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVK 279 (325)
T ss_pred hhcCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 233444444 4667777777778888888999999999999999999999999999999999888888889999999
Q ss_pred HhHHHHHHHHHH
Q 048767 571 RIKRDKQLAEDH 582 (1041)
Q Consensus 571 rLK~Ek~~~~~~ 582 (1041)
+||..-+.++..
T Consensus 280 ~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 280 RLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHH
Confidence 999988887754
No 40
>PRK00106 hypothetical protein; Provisional
Probab=95.53 E-value=0.88 Score=54.57 Aligned_cols=72 Identities=26% Similarity=0.405 Sum_probs=34.6
Q ss_pred hhhhhHHHHHHhhchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHH
Q 048767 365 QREFDLEIDQKRKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEE 443 (1041)
Q Consensus 365 k~eFElElE~kRKs~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~aeE 443 (1041)
+.+++-|+...|..++.++...... |..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.|....
T Consensus 74 ~lEaeeEi~~~R~ElEkel~eEr~r-------L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~ 145 (535)
T PRK00106 74 LLEAKEEARKYREEIEQEFKSERQE-------LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDERE 145 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555444443333 44444445555555555555555555555554444444444444333
No 41
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.49 E-value=15 Score=49.38 Aligned_cols=148 Identities=24% Similarity=0.351 Sum_probs=79.6
Q ss_pred HHhHHHHHHHHHhhhhhhhhcc-hhh-----hHHH---------------HHHHHHHhhhhHHHHhhhhchhhHHHHhhh
Q 048767 142 VLDLEKALREMRSENAEIKFTA-DSK-----LAEA---------------NALVTSIEEKSLEVEVKLRSVDAKVAEINR 200 (1041)
Q Consensus 142 VadLEKAL~emr~E~AEiK~ts-esK-----LaEA---------------~aLv~~~eeKslEvE~KL~aAeaklAEa~R 200 (1041)
|.+|+.+|++.|--.-.||++. +.- +.++ ..|++.| +-.-.|+..|..++..+..
T Consensus 232 i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEA----ag~r~rk~eA~kkLe~tE~ 307 (1486)
T PRK04863 232 FQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEA----LELRRELYTSRRQLAAEQY 307 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 5567778877777777777654 111 1222 2333333 2223555666666666666
Q ss_pred cchHHhhhhhhhhhHHHHHHHHHhHHHHHHhhhhhhhHHHhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHH
Q 048767 201 KSSEIERKSHELESRESALRMERASFIAEREAYEGTFSQQREDLREWERKLQDGEERLVKGQRIVNQREEKANEKEKIFK 280 (1041)
Q Consensus 201 k~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqe~eerL~~~qr~LNqREe~~~E~~~~l~ 280 (1041)
+...++..+.+++.+...|++++-....-....+ ++...-..+..+...|.+...++......+..-.+.+.+....+.
T Consensus 308 nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEle 386 (1486)
T PRK04863 308 RLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAE 386 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667777777777777777666544333222 222333444445555555555555555555555555555444455
Q ss_pred HhHHhHHHHHHhHH
Q 048767 281 QKEKDLEEAQEKID 294 (1041)
Q Consensus 281 ~kekeLEe~qkkie 294 (1041)
..+.++..++..+.
T Consensus 387 elEeeLeeLqeqLa 400 (1486)
T PRK04863 387 AAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555544443
No 42
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.43 E-value=12 Score=48.07 Aligned_cols=276 Identities=23% Similarity=0.313 Sum_probs=0.0
Q ss_pred HhHHHHHHhHHHhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHhHhhHHh
Q 048767 284 KDLEEAQEKIDATNLSLMRKEDDINKRLANLITKEKEYDAARKSLEMKEEELRQLEEKLNAREKVEVEKLLDEHKASLDA 363 (1041)
Q Consensus 284 keLEe~qkkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~ 363 (1041)
..|-.++++|...-..| ++++.-|.+|-.-=..+..++..|+-+=.+|.-++..+..-+.--++.=+..+.--+..
T Consensus 677 ~~l~~~~~~~~~~q~el----~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e 752 (1174)
T KOG0933|consen 677 QKLKQAQKELRAIQKEL----EALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEE 752 (1174)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHH
Q ss_pred hhhhhhHHHHHHhhchHHH--HHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhh
Q 048767 364 KQREFDLEIDQKRKAFDDD--LKSKVVEVEK-KEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMK 440 (1041)
Q Consensus 364 Kk~eFElElE~kRKs~dee--l~~K~~~~e~-rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~ 440 (1041)
=..+......-.+++.+.= |+++..+|.. ||..++..+..|-.-.|-++..+..++..+.++..=.-...+-++.+.
T Consensus 753 ~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~ 832 (1174)
T KOG0933|consen 753 SEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEIS 832 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 441 SEEKNLETEKKQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLL 520 (1041)
Q Consensus 441 aeEK~le~ek~~L~~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~ 520 (1041)
..+..++.-..++..=+.++-.+.+.+-+.-.....-..+|...+.++.---.+=..++..+-.+-.++-..-.....|.
T Consensus 833 ~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle 912 (1174)
T KOG0933|consen 833 SLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLE 912 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH------------------------HHHHHHHHHHHHHHH
Q 048767 521 KEAEDLKQQKENFEKEWEQLDEKRAEVE------------------------KELKKISEQTEKLEK 563 (1041)
Q Consensus 521 kEae~Lk~eKekFE~EWE~LDEKR~el~------------------------KE~~~I~eere~le~ 563 (1041)
.|...++.++..-.++-+.|-.|-+=|. .+++.+.+-..++++
T Consensus 913 ~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k 979 (1174)
T KOG0933|consen 913 HEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEK 979 (1174)
T ss_pred hHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHh
No 43
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.33 E-value=5.4 Score=43.47 Aligned_cols=248 Identities=21% Similarity=0.315 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHhHHHHHHhhhhhhhHHHhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHh
Q 048767 213 ESRESALRMERASFIAEREAYEGTFSQQREDLREWERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEK 292 (1041)
Q Consensus 213 EaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqe~eerL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkk 292 (1041)
+.--..||+..-....|+...+-.+..-+..+.++..++... .......+.++..+++-
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e---------------------~~~~~~le~el~~lrk~ 111 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE---------------------LAERKDLEEELESLRKD 111 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhhhhhh
Confidence 444456777777777777777777777777788887777755 23334456667777776
Q ss_pred HHHhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHH-HHHHhHhhHHhhhhhhhHH
Q 048767 293 IDATNLSLMRKEDDINKRLANLITKEKEYDAARKSLEMKEEELRQLEEKLNAREKVEVEK-LLDEHKASLDAKQREFDLE 371 (1041)
Q Consensus 293 ie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQk-Lldeh~a~L~~Kk~eFElE 371 (1041)
++.+.......+. ++..|- ++++-++ ..-+.++..|...+...-.+++.. --.+-..+|..=+.+|+..
T Consensus 112 ld~~~~~r~~le~----~i~~L~---eEl~fl~---~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~ 181 (312)
T PF00038_consen 112 LDEETLARVDLEN----QIQSLK---EELEFLK---QNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEI 181 (312)
T ss_dssp HHHHHHHHHHHHH----HHHHHH---HHHHHHH---HHHHHHHHTTSTT----------------HHHHHHHHHHHHHHH
T ss_pred hhhhhhhHhHHHH----HHHHHH---HHHHHHH---hhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHH
Confidence 6666555433332 222221 2222222 235567777777776333333221 1122344455555667777
Q ss_pred HHHHhhchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHhhhhhhhhhhhhHHhhhHH
Q 048767 372 IDQKRKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDV---ESKLKDLNGREKTMKSEEKNLET 448 (1041)
Q Consensus 372 lE~kRKs~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl---~~K~k~LkEkEksL~aeEK~le~ 448 (1041)
+...+..++.-...|+.++... +..-..++..-...+.+.-..+ ...+..|+.+- .+.+..|..
T Consensus 182 ~~~~~~e~e~~y~~k~~~l~~~----------~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~---~~Le~~l~~ 248 (312)
T PF00038_consen 182 AQKNREELEEWYQSKLEELRQQ----------SEKSSEELESAKEELKELRRQIQSLQAELESLRAKN---ASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred Hhhhhhhhhhhccccccccccc----------ccccccccchhHhHHHHHHhhhhHhhhhhhccccch---hhhhhhHHH
Confidence 7777777777777776665432 1222222222222222222222 22222222221 222222222
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 449 EKKQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRL 514 (1041)
Q Consensus 449 ek~~L~~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~ 514 (1041)
-...+..+...+. +.+..-..+|.+-+..+...-.|-.+++...+.|--||..||.
T Consensus 249 le~~~~~~~~~~~----------~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 249 LEQRLDEEREEYQ----------AEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------HhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2222222222222 2222222222222333333445667899999999999999996
No 44
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.20 E-value=8.5 Score=45.00 Aligned_cols=92 Identities=23% Similarity=0.244 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 048767 470 IRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEK 549 (1041)
Q Consensus 470 ~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~K 549 (1041)
.++.++.++..+......++....+..++...-.+|...|..+|.....+..+...|+.+.+..+..=..+.++-.++..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~ 386 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD 386 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence 45555555555555555555555566666666667777777777777777777777777777766665555555555555
Q ss_pred HHHHHHHHHHHH
Q 048767 550 ELKKISEQTEKL 561 (1041)
Q Consensus 550 E~~~I~eere~l 561 (1041)
++..+..++..+
T Consensus 387 ~l~~~~~~~~~~ 398 (562)
T PHA02562 387 ELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHH
Confidence 555555444333
No 45
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.06 E-value=15 Score=47.13 Aligned_cols=271 Identities=24% Similarity=0.361 Sum_probs=124.6
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHHHHH---hHhhHHhhhhhhhH--HHHHHhhchH-----HHHHHHHHHHHHHhhhhh
Q 048767 329 EMKEEELRQLEEKLNAREKVEVEKLLDE---HKASLDAKQREFDL--EIDQKRKAFD-----DDLKSKVVEVEKKEAEIN 398 (1041)
Q Consensus 329 e~KEkeLl~leEKL~aRE~~eIQkLlde---h~a~L~~Kk~eFEl--ElE~kRKs~d-----eel~~K~~~~e~rEvel~ 398 (1041)
+.+|.-|.+++|.-..+++ |+.||.. -=-.|+.-|-+++. +++..|++++ .|+..=+..++.-|.+..
T Consensus 170 erreeSlkim~ET~qK~ek--I~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~ 247 (1200)
T KOG0964|consen 170 ERREESLKIMEETKQKREK--INELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRS 247 (1200)
T ss_pred HhHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 4467777788888877765 5555433 22333333433332 5677777764 333333344444444433
Q ss_pred hh---HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHHhhhHHHH-------HHH-----------HhhH
Q 048767 399 HK---EEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETEK-------KQL-----------LADK 457 (1041)
Q Consensus 399 h~---Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~aeEK~le~ek-------~~L-----------~~dk 457 (1041)
.. -.++.-.-....-.++.++..=+.|+.++..|.+--..+++.+-++-..+ ..| ..+-
T Consensus 248 ~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l 327 (1200)
T KOG0964|consen 248 SAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLAL 327 (1200)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHH
Confidence 22 22222222223334555555566677777777775555555543332222 222 2233
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhhc----------------ccHHHHHHHHHHHH-HHHHHHH
Q 048767 458 EDILTEKAELEKIRDANEQ----------QLLKIYEEKNQLR----------------ISEEERAEYLRLQS-ELKEQIG 510 (1041)
Q Consensus 458 eei~~lK~elEK~~a~~e~----------q~~qi~ee~e~Lk----------------iteeER~E~l~Lqs-eLKeEId 510 (1041)
..++.++..++....++.. +..+...-.-.|+ -+++||+.+++-+- +|+.=|.
T Consensus 328 ~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~ 407 (1200)
T KOG0964|consen 328 HVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGIN 407 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHh
Confidence 4445555554444433322 1111111111111 14578887776553 3556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHh
Q 048767 511 KCRLQEEMLLKEAEDLKQQKENFEKEWEQ----LDEKRAEVEKELKKISEQTEKLEKEKLSEEERIKRDKQLAEDHIKRE 586 (1041)
Q Consensus 511 ~~R~Qke~L~kEae~Lk~eKekFE~EWE~----LDEKR~el~KE~~~I~eere~le~~~~~E~erLK~Ek~~~~~~~kre 586 (1041)
..--|..-|.+|.++|+.+...--.+... |++-+..+..=...+++.+..+..++ ..+.-|=.|...++.-+-.=
T Consensus 408 ~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~-~~Rk~lWREE~~l~~~i~~~ 486 (1200)
T KOG0964|consen 408 DTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQ-DKRKELWREEKKLRSLIANL 486 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665543322211111 11222222222223333333333322 33333334444444444444
Q ss_pred HHHHHHhHHHHHHhhH
Q 048767 587 WEALEVAKESFKATMD 602 (1041)
Q Consensus 587 lE~L~~ekEsF~~~M~ 602 (1041)
.+.|+.+..-.++.|.
T Consensus 487 ~~dl~~~~~~L~~~~~ 502 (1200)
T KOG0964|consen 487 EEDLSRAEKNLRATMN 502 (1200)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4555555555555554
No 46
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.90 E-value=10 Score=44.35 Aligned_cols=51 Identities=20% Similarity=0.220 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 048767 504 ELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKI 554 (1041)
Q Consensus 504 eLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I 554 (1041)
.+..++..++...+.|.....++..+....+.+|..+...++++.++....
T Consensus 355 ~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~ 405 (562)
T PHA02562 355 TLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405 (562)
T ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667777777777777788888888899999999999999999988763
No 47
>PRK12704 phosphodiesterase; Provisional
Probab=94.83 E-value=1.1 Score=53.30 Aligned_cols=120 Identities=19% Similarity=0.283 Sum_probs=54.5
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHhhH
Q 048767 378 AFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQLLADK 457 (1041)
Q Consensus 378 s~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~aeEK~le~ek~~L~~dk 457 (1041)
.++.++...+.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.|...+
T Consensus 61 eaeeE~~~~R~Ele---~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re-------------- 123 (520)
T PRK12704 61 EAKEEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQ-------------- 123 (520)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 34455555554444 3445555555555555544444444444444433333333333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 048767 458 EDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAE--YLRLQSELKEQIGKCRLQEEMLL 520 (1041)
Q Consensus 458 eei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E--~l~LqseLKeEId~~R~Qke~L~ 520 (1041)
+++...+.+++++.......+.+|. -.|.+|=-+ +..+..+++.++..+-.+.+.-.
T Consensus 124 ~eLe~~~~~~~~~~~~~~~~l~~~a------~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (520)
T PRK12704 124 QELEKKEEELEELIEEQLQELERIS------GLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEA 182 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333344444444444443332 223333333 33566778888877544444333
No 48
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.70 E-value=20 Score=46.80 Aligned_cols=264 Identities=22% Similarity=0.266 Sum_probs=148.6
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHhHhhHHhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHhh----h
Q 048767 321 YDAARKSLEMKEEELRQLEEKLNAREKVEVEKLLDEHKASLDAKQREFDLEIDQKRKAFDDDLKSKVVEVEKKEA----E 396 (1041)
Q Consensus 321 ~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~deel~~K~~~~e~rEv----e 396 (1041)
+......++.-+.+|...-+|+..-...+.++.=+ |+ ....+-..++.+++. .++.++..|+.+.| .
T Consensus 336 i~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~-~~----~~~~e~~~~~kn~~~----~~k~~~~~~e~~~vk~~E~ 406 (1293)
T KOG0996|consen 336 IAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEA-VK----KEIKERAKELKNKFE----SLKKKFQDLEREDVKREEK 406 (1293)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHH-HH----HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34555566667777777777766444444444311 11 112222233333332 34445555554443 3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhh-------hhhhhHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 048767 397 INHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGRE-------KTMKSEEKNLETEKKQLLADKEDILTEKAELEK 469 (1041)
Q Consensus 397 l~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkE-------ksL~aeEK~le~ek~~L~~dkeei~~lK~elEK 469 (1041)
++|.=.++.|-+..+++-.++..+.++-.+.=....-+-. +.+.-+++.|..++..|... -..+..++.+
T Consensus 407 lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~---t~~~~~e~~~ 483 (1293)
T KOG0996|consen 407 LKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQE---TEGIREEIEK 483 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhHHHHHH
Confidence 4444455555555555555555555544433222221111 12222233333333333222 2345677778
Q ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 048767 470 IRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEK 549 (1041)
Q Consensus 470 ~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~K 549 (1041)
+..++..-..++.+....+.+.++|=.-|+..+..+..-.+.+-....-+++..++.+..--....+...+--+..++.+
T Consensus 484 ~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k 563 (1293)
T KOG0996|consen 484 LEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEK 563 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 88888888899999999999999998888888888877777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHH--HhHHHHHHhHHH
Q 048767 550 ELKKISEQTEKLEKEKLSEEERIKRDKQLAEDHIK--REWEALEVAKES 596 (1041)
Q Consensus 550 E~~~I~eere~le~~~~~E~erLK~Ek~~~~~~~k--relE~L~~ekEs 596 (1041)
++.....+=..+...++.=+.++-.-+..|...-. .=|.+|.+.+++
T Consensus 564 ~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kes 612 (1293)
T KOG0996|consen 564 ELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKES 612 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
Confidence 77766655555555554444444333333322211 235666666664
No 49
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.62 E-value=1.4 Score=52.58 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q 048767 500 RLQSELKEQIGKC 512 (1041)
Q Consensus 500 ~LqseLKeEId~~ 512 (1041)
.+..+++.++..+
T Consensus 156 ~~~~~~~~~~~~~ 168 (514)
T TIGR03319 156 EVEEEARHEAAKL 168 (514)
T ss_pred HHHHHHHHHHHHH
Confidence 4555666666554
No 50
>PRK00106 hypothetical protein; Provisional
Probab=94.51 E-value=1.4 Score=52.87 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=15.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 451 KQLLADKEDILTEKAELEKIRDANEQQLLKIY 482 (1041)
Q Consensus 451 ~~L~~dkeei~~lK~elEK~~a~~e~q~~qi~ 482 (1041)
..|..-.+++...+.+++.+......++.+|.
T Consensus 132 keLe~reeeLee~~~~~~~~~~~~~~~Le~~a 163 (535)
T PRK00106 132 QSLTDKSKHIDEREEQVEKLEEQKKAELERVA 163 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444445555555555555555443
No 51
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=93.80 E-value=1.2 Score=46.74 Aligned_cols=70 Identities=29% Similarity=0.530 Sum_probs=43.4
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhh
Q 048767 371 EIDQKRKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMK 440 (1041)
Q Consensus 371 ElE~kRKs~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~ 440 (1041)
++...|..++.++..+..++..+|..|..+|+.|..+...|+++...|..++.+|..+...|..++..+.
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677788888777777777776666666666666666665555555555555555555544444433
No 52
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.72 E-value=39 Score=46.27 Aligned_cols=583 Identities=19% Similarity=0.272 Sum_probs=268.0
Q ss_pred HHHHHHHHHHHHHhhhhhcchhheeeccchh----------------hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 048767 63 SLAEKVSKLENELFEYQYNMGLLLIEKKEWS----------------SKYEELKQTFAEAKDALKREQAAHLIAITDVEK 126 (1041)
Q Consensus 63 aLia~iskLE~ElydYQynMGLLLiEkKEwt----------------Sk~eel~qa~~ea~~~lKREqaAhl~ALsEaeK 126 (1041)
.+-++|+.|++++-+---+.--|+=|+..|. |..++..+..+ .+..+..-+...=+...|..+
T Consensus 576 ~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~-~e~~l~qLe~~le~~~~E~~~ 654 (1822)
T KOG4674|consen 576 EASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRA-KEKRLRQLENELESYKKEKRE 654 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchh-HHHHHHHHHHHHHHHHHHHHH
Confidence 6678899999988776666666776766662 11111111111 111222222222233333333
Q ss_pred HHHHHHHhhhhhHHHHHhHHHHHHHHHhhhhhhhh---cchhhhHHHHHHH-------HHHhhhhHHHHhhhhchhhHHH
Q 048767 127 REENLRKALGVEKQCVLDLEKALREMRSENAEIKF---TADSKLAEANALV-------TSIEEKSLEVEVKLRSVDAKVA 196 (1041)
Q Consensus 127 REEnLkKALgvEKqCVadLEKAL~emr~E~AEiK~---tsesKLaEA~aLv-------~~~eeKslEvE~KL~aAeaklA 196 (1041)
+...|.+. +.+|.+-..+||...--++. .|--|+.-++--| +.+.+....+..=++..+....
T Consensus 655 ~~~~l~e~-------~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~ 727 (1822)
T KOG4674|consen 655 NLKKLQED-------FDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVH 727 (1822)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332 33455555555555522221 1222333333333 2333444455566777888888
Q ss_pred HhhhcchHHhhhhhhhhhHHHHHHHHHhHHH-------HHHhhhhhhhHHHhhhHHHHHHHhhhhhhhhhhhhhhhhhhH
Q 048767 197 EINRKSSEIERKSHELESRESALRMERASFI-------AEREAYEGTFSQQREDLREWERKLQDGEERLVKGQRIVNQRE 269 (1041)
Q Consensus 197 Ea~Rk~s~aeRKL~eVEaRE~~LrRerlSf~-------~Erea~E~~i~~QRe~L~EweKkLqe~eerL~~~qr~LNqRE 269 (1041)
.++---..+..++.-+++.=+.|+.+-..|. .|.+++....+.++-+|...+-.....++-...+...+++|
T Consensus 728 ~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~- 806 (1822)
T KOG4674|consen 728 TLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESR- 806 (1822)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8888888889999999999999988877665 34444444444444444444444444444444444444322
Q ss_pred HhhhhhHHHHHHhHHhHHHHHHhHHHhhhhhhhhhhhHHHHH----HhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhh
Q 048767 270 EKANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKEDDINKRL----ANLITKEKEYDAARKSLEMKEEELRQLEEKLNAR 345 (1041)
Q Consensus 270 e~~~E~~~~l~~kekeLEe~qkkie~~~~~Lk~keddi~~rl----~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aR 345 (1041)
+...+.+|..+++++......++....+++.-| ..+..-...++.+...|......+..++-+++.=
T Consensus 807 ---------i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL 877 (1822)
T KOG4674|consen 807 ---------IKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSEL 877 (1822)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122555666666666665555554444333222 2222223333344444433333333333333332
Q ss_pred h----HHHHHHHHHHh---HhhHHhhhhhhhHHHHHH---hhchHHHHHHH---HHHHHHHhhhhhhhHHHHHHHHHHHH
Q 048767 346 E----KVEVEKLLDEH---KASLDAKQREFDLEIDQK---RKAFDDDLKSK---VVEVEKKEAEINHKEEKIAKREMALE 412 (1041)
Q Consensus 346 E----~~eIQkLldeh---~a~L~~Kk~eFElElE~k---RKs~deel~~K---~~~~e~rEvel~h~Eekl~krEqaLe 412 (1041)
+ .+.++.+..+. .....-+-..|..++++- +..|-..+... -..+..-|.-|..+...+.+--+.++
T Consensus 878 ~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~e 957 (1822)
T KOG4674|consen 878 EKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELE 957 (1822)
T ss_pred HHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 2 36666666665 233333334466655544 33222221111 11222223333333333333333333
Q ss_pred HHHHHHHhhhhhHHHHHhhhhhhhhhhh--------hHHh---hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 413 KRLEKCKDKEKDVESKLKDLNGREKTMK--------SEEK---NLETEKKQLLADKEDILTEKAELEKIRDANEQQLLKI 481 (1041)
Q Consensus 413 ~k~~~lkeKEkdl~~K~k~LkEkEksL~--------aeEK---~le~ek~~L~~dkeei~~lK~elEK~~a~~e~q~~qi 481 (1041)
.+.+.+..+--.|+.++..|+..=..|. -.++ .+..+...++.+...+.....+..+....+.+++..+
T Consensus 958 a~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~ 1037 (1822)
T KOG4674|consen 958 AKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTE 1037 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333322211111 1111 1122233333444444444333333333333333322
Q ss_pred HHHHhhhcccHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 048767 482 YEEKNQLRISEEER----AEYLRL---QSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKI 554 (1041)
Q Consensus 482 ~ee~e~LkiteeER----~E~l~L---qseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I 554 (1041)
.+.+......- ..|..+ =.+|+++..+|-.+-..|-+..+-+...-..|++-|. |++.-|..|....
T Consensus 1038 ---~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~---E~~~~Leqe~~~~ 1111 (1822)
T KOG4674|consen 1038 ---TEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWS---EKEDALEQEVNEL 1111 (1822)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchH---HHHHHHHHHHHHH
Confidence 22222222211 111111 2356777777777888888888888888888999995 5555666555544
Q ss_pred HHHHHHHHHHhhhHHHHh---HHH---------HHHHHHHHHHhHHHHHHhHHHHHHhh---HhhhhHHHHHHH---HHH
Q 048767 555 SEQTEKLEKEKLSEEERI---KRD---------KQLAEDHIKREWEALEVAKESFKATM---DHEQSMITEKAE---SER 616 (1041)
Q Consensus 555 ~eere~le~~~~~E~erL---K~E---------k~~~~~~~krelE~L~~ekEsF~~~M---~hE~s~~~ek~q---~Er 616 (1041)
...=+-|+..-..=.+.+ -.- +.. ..++.+=+-.|+.+++-|.++. ..|-..+..++. +..
T Consensus 1112 ~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g-~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i 1190 (1822)
T KOG4674|consen 1112 KKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLG-LSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTI 1190 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccc-hHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333332221111111 110 011 2335555667788888876653 344443333322 233
Q ss_pred HHHhhHHHHhhhhhHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 048767 617 RQLLHDFELQKRKLES---------DMQNRQEELEKDLKEKERLFEEEKERELSNINYLRDIAR 671 (1041)
Q Consensus 617 ad~l~d~E~qkreLe~---------~~~~rqEE~E~~L~EREk~FEeek~~EL~~In~lke~a~ 671 (1041)
.|+.+-+-.-+-.-.. .+.+.-+.+ +-|.|=-+.|.++.++.++.|--|++.++
T Consensus 1191 ~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~v-Nll~EsN~~LRee~~~~~~k~qEl~~~i~ 1253 (1822)
T KOG4674|consen 1191 DDLQRSLTAERASSQKSAVSDDEHKEILEKVEEV-NLLRESNKVLREENEANLEKIQELRDKIE 1253 (1822)
T ss_pred HHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433333322222211 111111111 23445566677777777777766655443
No 53
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.96 E-value=15 Score=39.18 Aligned_cols=144 Identities=20% Similarity=0.323 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHH
Q 048767 495 RAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEERIKR 574 (1041)
Q Consensus 495 R~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~erLK~ 574 (1041)
+..-+-|-.-||++|...|......-+...++.++-.+.-.--..+.+..++|++.+......+..|....
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k--------- 92 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLK--------- 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 55677888899999999999999999999999999999999999999999999999887765554444332
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHHH---HhhHhhhhHHHHHHHHHHHHHhhHHHHhhhhhHhHHHHHHHHHHHHHHHHHHH
Q 048767 575 DKQLAEDHIKREWEALEVAKESFK---ATMDHEQSMITEKAESERRQLLHDFELQKRKLESDMQNRQEELEKDLKEKERL 651 (1041)
Q Consensus 575 Ek~~~~~~~krelE~L~~ekEsF~---~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLe~~~~~rqEE~E~~L~EREk~ 651 (1041)
..+. ....++..|..+.+.+. .+++.||.+|..+-.. +++|+.-.---=.+-++++...+...|.-|+..
T Consensus 93 --~rl~-~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~----~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaq 165 (201)
T PF13851_consen 93 --ARLK-ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES----AIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQ 165 (201)
T ss_pred --HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2121 23556666666666554 3444555555554442 233332222222334556666666666666665
Q ss_pred HHH
Q 048767 652 FEE 654 (1041)
Q Consensus 652 FEe 654 (1041)
+.+
T Consensus 166 L~e 168 (201)
T PF13851_consen 166 LNE 168 (201)
T ss_pred HHH
Confidence 543
No 54
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.38 E-value=44 Score=43.31 Aligned_cols=296 Identities=21% Similarity=0.299 Sum_probs=141.4
Q ss_pred hHHHHHHhhhhhhhHHHhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHH---hhhhh
Q 048767 224 ASFIAEREAYEGTFSQQREDLREWERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDA---TNLSL 300 (1041)
Q Consensus 224 lSf~~Erea~E~~i~~QRe~L~EweKkLqe~eerL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~---~~~~L 300 (1041)
++.--|-+-+...|..-=+.+.++=+.|.+.-+-|..-|.+=++| ++. .++.-.++|.++..+++. ...+.
T Consensus 176 lkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~r--r~l----EYtiYdrEl~E~~~~l~~le~~r~~~ 249 (1200)
T KOG0964|consen 176 LKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKER--RSL----EYTIYDRELNEINGELERLEEDRSSA 249 (1200)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH--hhh----hhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 344445555555555555555555555555555555555544433 222 244455556555554433 23333
Q ss_pred hhhhhhHHHHHHhhhhhHHHHHHHHhhhhhhHHHHHHHH---HHHhhhhHHHHHHHHHHhHhhHHhhhhhhhHHHHHHh-
Q 048767 301 MRKEDDINKRLANLITKEKEYDAARKSLEMKEEELRQLE---EKLNAREKVEVEKLLDEHKASLDAKQREFDLEIDQKR- 376 (1041)
Q Consensus 301 k~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~le---EKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kR- 376 (1041)
-++-+++... +...+.+.+.....+-..|..|..|- +.+.+++..-+++. +.|..+..+|--+++--+
T Consensus 250 ~e~s~~~~~~---~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~k-----t~lel~~kdlq~~i~~n~q 321 (1200)
T KOG0964|consen 250 PEESEQYIDA---LDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKK-----TKLELKIKDLQDQITGNEQ 321 (1200)
T ss_pred chhhhhHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhhhHHHHHHhhhhhh
Confidence 3332222222 22233333333333333333333322 24455555555544 455555544444443221
Q ss_pred --hchHHHHHHHHHHHHHHhhhhhhhH---HHHHHHHHHHHHHHHHHHhhhhhHHHH------HhhhhhhhhhhhhHHhh
Q 048767 377 --KAFDDDLKSKVVEVEKKEAEINHKE---EKIAKREMALEKRLEKCKDKEKDVESK------LKDLNGREKTMKSEEKN 445 (1041)
Q Consensus 377 --Ks~deel~~K~~~~e~rEvel~h~E---ekl~krEqaLe~k~~~lkeKEkdl~~K------~k~LkEkEksL~aeEK~ 445 (1041)
++.-..++.=....+.++.++...+ ..+...|.-+..++..+..+..||-+| ++.-+++++=|+.+
T Consensus 322 ~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~e--- 398 (1200)
T KOG0964|consen 322 QRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSE--- 398 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHH---
Confidence 1111111111111222222222222 122333344444444444444444433 33445566655544
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 446 LETEKKQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAED 525 (1041)
Q Consensus 446 le~ek~~L~~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~ 525 (1041)
|+.-+.-+..-++....++-|++-+...+++...+|.+-...+.-++..-.++...-..||++.|..-.....|--|.-.
T Consensus 399 i~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~ 478 (1200)
T KOG0964|consen 399 IEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKK 478 (1200)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777777777766666666666665555555556666677677777777777665555555555555
Q ss_pred HHHHHHHHHHH
Q 048767 526 LKQQKENFEKE 536 (1041)
Q Consensus 526 Lk~eKekFE~E 536 (1041)
|+...++.+.+
T Consensus 479 l~~~i~~~~~d 489 (1200)
T KOG0964|consen 479 LRSLIANLEED 489 (1200)
T ss_pred HHHHHHHHHHH
Confidence 55555554433
No 55
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.28 E-value=34 Score=41.79 Aligned_cols=302 Identities=16% Similarity=0.219 Sum_probs=158.7
Q ss_pred hhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhHHHHHHHHHhHHHHHHhhh
Q 048767 154 SENAEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRESALRMERASFIAEREAY 233 (1041)
Q Consensus 154 ~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~ 233 (1041)
.+...||+.++.=|+.|..+|+++......++..+.....-+.++-.+.-.+
T Consensus 81 ~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~---------------------------- 132 (546)
T KOG0977|consen 81 RETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA---------------------------- 132 (546)
T ss_pred CCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------------------------
Confidence 5778999999999999999999998888777776665555444443322221
Q ss_pred hhhhHHHhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhhhhhhhhHHHHHHh
Q 048767 234 EGTFSQQREDLREWERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKEDDINKRLAN 313 (1041)
Q Consensus 234 E~~i~~QRe~L~EweKkLqe~eerL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~~~~~Lk~keddi~~rl~~ 313 (1041)
++..---|+++.+|...|-+.+.-++-.++-+..=|+.....-+..-+...+|..+++-+|.+...-...+..+..=+..
T Consensus 133 ~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Llee 212 (546)
T KOG0977|consen 133 EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEE 212 (546)
T ss_pred HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 11222335677777777777777776666666555555444444444455566666665555543222111111111111
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhH-HHHHHHH-HHhHhhHHhhhhhhhHHHHHHhhchHHHHHHHHHHHH
Q 048767 314 LITKEKEYDAARKSLEMKEEELRQLEEKLNAREK-VEVEKLL-DEHKASLDAKQREFDLEIDQKRKAFDDDLKSKVVEVE 391 (1041)
Q Consensus 314 L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~-~eIQkLl-deh~a~L~~Kk~eFElElE~kRKs~deel~~K~~~~e 391 (1041)
|. -...+=+.+|.+..-+. .|+. ...+... ++-..++.-=+-+||.-+..-|+.++.=.+.|+.++.
T Consensus 213 l~----------f~~~~h~~eI~e~~~~~-~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~ 281 (546)
T KOG0977|consen 213 LA----------FLKRIHKQEIEEERRKA-RRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIR 281 (546)
T ss_pred HH----------HHHhccHHHHHHHHHHH-hhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 11 11112223333322221 1221 0111000 0111222223445666666677777666666766655
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 048767 392 KKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQLLADKEDILTEKAELEKIR 471 (1041)
Q Consensus 392 ~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~aeEK~le~ek~~L~~dkeei~~lK~elEK~~ 471 (1041)
..=.-- -..-+..-+.|...-.-+.+--.-|-+-|..-.+.++.|+.-+.+|..|+...+..=++.+...
T Consensus 282 ~~~~~~----------~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i 351 (546)
T KOG0977|consen 282 TSAERA----------NVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEI 351 (546)
T ss_pred hhhccc----------cchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHH
Confidence 310000 0011112222223333333333334444566666777788888888877777666555555555
Q ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 472 DANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRL 514 (1041)
Q Consensus 472 a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~ 514 (1041)
+.+-+++.++. -|...|+-.+.-|--||..||.
T Consensus 352 ~~mReec~~l~----------~Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 352 AKMREECQQLS----------VELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred HHHHHHHHHHH----------HHHHHhhchHhHHHhHHHHHHH
Confidence 55555544444 3555667777788889999985
No 56
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=91.03 E-value=5 Score=42.23 Aligned_cols=58 Identities=28% Similarity=0.589 Sum_probs=33.3
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHHhhh
Q 048767 389 EVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNL 446 (1041)
Q Consensus 389 ~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~aeEK~l 446 (1041)
++..+..++..+|..|.+||..|+.+.+.|..++..|+.+...|..+...|..-+..+
T Consensus 72 E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~ 129 (201)
T PF12072_consen 72 ELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEEL 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666666555555555544444444333
No 57
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=90.95 E-value=42 Score=40.22 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcccccchhhhhhhhHhhhhhhhhccCCCCChhhhhhh
Q 048767 730 RDRFLNFVEKQKKCEHCAEITSEFVLSDLVQEIVKSEVPPLPRVANDY 777 (1041)
Q Consensus 730 Re~f~~~vEklK~ckncg~~~~efvLsdLq~d~e~~~~~~~~~~~d~~ 777 (1041)
+.-|...+..|+.|.....+++- +|+.|.+.....-+|+...|.++|
T Consensus 429 ~~p~~~el~~l~~~~~~d~~v~~-~l~~l~~~a~~~Gv~s~~~L~~rf 475 (582)
T PF09731_consen 429 PRPFEDELRALKELAPDDELVDA-ALSSLPPEAAQRGVPSEAQLRNRF 475 (582)
T ss_pred CCCHHHHHHHHHHhCCCChHHHH-HHHhcCHHHhhCCCCCHHHHHHHH
Confidence 46788888889888666555443 466666666655778888888877
No 58
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.37 E-value=62 Score=41.21 Aligned_cols=56 Identities=38% Similarity=0.353 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Q 048767 455 ADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIG 510 (1041)
Q Consensus 455 ~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId 510 (1041)
+-++.+.+=.++|++-|-.+++|.++-.++.++.+--+.+|-+-.|++.+=|.+++
T Consensus 317 KrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlE 372 (1118)
T KOG1029|consen 317 KRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLE 372 (1118)
T ss_pred hhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999999999999998888888888777766555543
No 59
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.33 E-value=48 Score=39.87 Aligned_cols=307 Identities=21% Similarity=0.253 Sum_probs=148.7
Q ss_pred HHHhhhhhHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 048767 417 KCKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERA 496 (1041)
Q Consensus 417 ~lkeKEkdl~~K~k~LkEkEksL~aeEK~le~ek~~L~~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~ 496 (1041)
++.+.+.......... |-..|.....+...--..|..=+++|.+++.++......-..=..++..+.-..++...--.
T Consensus 98 r~~e~e~~~~~~~~~~--~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve 175 (522)
T PF05701_consen 98 RAKELEQGIAEEASVA--WKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVE 175 (522)
T ss_pred HHHHHhhhhcccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444433222 44444445555555556666677777777777766666555556666666555554443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q 048767 497 EYLRLQSELKEQIGKCRLQEEMLLKEAEDL----KQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEERI 572 (1041)
Q Consensus 497 E~l~LqseLKeEId~~R~Qke~L~kEae~L----k~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~erL 572 (1041)
++..==..||+.|+..+.-...-.++.-.+ .+.+..|+.+-+.-.++-..|..++..+..=.-+|.... .+-..|
T Consensus 176 ~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~-~~l~~L 254 (522)
T PF05701_consen 176 ELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEAS-AELESL 254 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 333223458888888765333322222222 244445555544555555555555533332222232221 333333
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHhhHhhhhHHHHHHHHHHHHHhhHHHHhhhhhH------hHHHHHHHHHHHHHH
Q 048767 573 KRDKQLAEDHIKREWEALEVAKESFKATMDHEQSMITEKAESERRQLLHDFELQKRKLE------SDMQNRQEELEKDLK 646 (1041)
Q Consensus 573 K~Ek~~~~~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLe------~~~~~rqEE~E~~L~ 646 (1041)
+.+...... ..++... +.-.-...++..-..+..+++--+.+|+ +.|..-.+-+...|
T Consensus 255 q~El~~~~~---~~l~~~~------------~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~EL- 318 (522)
T PF05701_consen 255 QAELEAAKE---SKLEEEA------------EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSEL- 318 (522)
T ss_pred HHHHHHHHH---HHHhhhH------------HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 333222221 1111110 0111111222222222223332222222 11222222222222
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcHHHHHHHhHHHHHHHHHH
Q 048767 647 EKERLFEEEKERELSNINYLRDIARKEMEEMKLERLKLEKEKQEVDSHRKHLEGEQVGIRKDIDMLVGLTKMLKEQREQI 726 (1041)
Q Consensus 647 EREk~FEeek~~EL~~In~lke~a~kE~E~v~lE~~rLekEr~Ei~~~ke~le~e~~em~kdIeeL~~ls~KLk~QRE~~ 726 (1041)
++.+. ++..+..--..+...+..+..++.++..+-.-+...-.+......+|...+..|..-....+.-.+..
T Consensus 319 e~~K~-------el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~ 391 (522)
T PF05701_consen 319 EKEKE-------ELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEA 391 (522)
T ss_pred HHHHH-------HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11111111223334445555555555555544455555566778888889999988888888888888
Q ss_pred HHHHHHHHHHHHhhcccccchhh
Q 048767 727 VKERDRFLNFVEKQKKCEHCAEI 749 (1041)
Q Consensus 727 ~~eRe~f~~~vEklK~ckncg~~ 749 (1041)
..+-...-..+++.|.+=.--+.
T Consensus 392 ~~E~~~~k~E~e~~ka~i~t~E~ 414 (522)
T PF05701_consen 392 KEEVEKAKEEAEQTKAAIKTAEE 414 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999988765444433
No 60
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.06 E-value=65 Score=39.54 Aligned_cols=285 Identities=19% Similarity=0.271 Sum_probs=127.3
Q ss_pred hhhhhHHHHHHhhchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHHh
Q 048767 365 QREFDLEIDQKRKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEK 444 (1041)
Q Consensus 365 k~eFElElE~kRKs~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~aeEK 444 (1041)
+-=||+|+-.-|+.+++- -.+....|-.|.+-...++.-..++.++++.+.+==..+..+...|...+-
T Consensus 87 k~~ye~El~~ar~~l~e~-----------~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leA 155 (546)
T KOG0977|consen 87 KAKYEAELATARKLLDET-----------ARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEA 155 (546)
T ss_pred hHHhhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhh
Confidence 334666666666655543 223333333344444444444444445555544444445555555554444
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 445 NLETEKKQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAE 524 (1041)
Q Consensus 445 ~le~ek~~L~~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae 524 (1041)
++..-+...-.=-+++.-+|.+...+...|..=+.+++.|.- -|.++.---..|.++|+-+..+=..
T Consensus 156 e~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etl-------lr~d~~n~~q~Lleel~f~~~~h~~------ 222 (546)
T KOG0977|consen 156 EINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETL-------LRVDLQNRVQTLLEELAFLKRIHKQ------ 222 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHhccHH------
Confidence 444444444444455556666666666666666666554431 2333333334466666655433221
Q ss_pred HHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHhHHHHHHhHHHHHHhhH
Q 048767 525 DLKQQKENFEKEW--EQLDEKRAEVEKELKKISEQTEKLEKEKLSEEERIKRDKQLAEDHIKREWEALEVAKESFKATMD 602 (1041)
Q Consensus 525 ~Lk~eKekFE~EW--E~LDEKR~el~KE~~~I~eere~le~~~~~E~erLK~Ek~~~~~~~krelE~L~~ekEsF~~~M~ 602 (1041)
++.+++.+|..+- +.=|.=+.+|..=+.+|-.+=++ ..+.=+.+++.-|++.+..++-.=+.+-..-.
T Consensus 223 eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~----------~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~ 292 (546)
T KOG0977|consen 223 EIEEERRKARRDTTADNREYFKNELALAIREIRAQYEA----------ISRQNRKDIESWYKRKIQEIRTSAERANVEQN 292 (546)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHhhhccccchhH
Confidence 1223333444433 22223333333333333322222 12223334444444444444421111111111
Q ss_pred hhh---hHHHHHHHHHHHHHhhHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 048767 603 HEQ---SMITEKAESERRQLLHDFELQKRKLESDMQNRQEELEKDLKEKERLFEEEKERELSNINYLRDIARKEMEEMKL 679 (1041)
Q Consensus 603 hE~---s~~~ek~q~Erad~l~d~E~qkreLe~~~~~rqEE~E~~L~EREk~FEeek~~EL~~In~lke~a~kE~E~v~l 679 (1041)
+=| ..+-..|-.=|++ |.|+|..-. .+.++.+.++..|.+=-+.|+..-..-- .+|..|.-
T Consensus 293 ~~rEEl~~~R~~i~~Lr~k-lselE~~n~----~L~~~I~dL~~ql~e~~r~~e~~L~~kd-----------~~i~~mRe 356 (546)
T KOG0977|consen 293 YAREELRRIRSRISGLRAK-LSELESRNS----ALEKRIEDLEYQLDEDQRSFEQALNDKD-----------AEIAKMRE 356 (546)
T ss_pred HHHHHHHHHHhcccchhhh-hccccccCh----hHHHHHHHHHhhhhhhhhhhhhhhhhHH-----------HHHHHHHH
Confidence 100 0011111111111 124444333 4556677888888888888886533222 33444555
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 048767 680 ERLKLEKEKQEVDSHRKHLE 699 (1041)
Q Consensus 680 E~~rLekEr~Ei~~~ke~le 699 (1041)
|+..|-.|.+.+--.+.-|+
T Consensus 357 ec~~l~~Elq~LlD~ki~Ld 376 (546)
T KOG0977|consen 357 ECQQLSVELQKLLDTKISLD 376 (546)
T ss_pred HHHHHHHHHHHhhchHhHHH
Confidence 55555555555444444444
No 61
>PRK12705 hypothetical protein; Provisional
Probab=88.44 E-value=20 Score=43.23 Aligned_cols=58 Identities=26% Similarity=0.425 Sum_probs=31.8
Q ss_pred HHHhhchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhh
Q 048767 373 DQKRKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREK 437 (1041)
Q Consensus 373 E~kRKs~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEk 437 (1041)
...|..++.+++.++.++..+ |..+.+||+.|+.+.+.|..++..|..+.+.|..+++
T Consensus 62 ~~~~~~~e~e~~~~~~~~~~~-------e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~ 119 (508)
T PRK12705 62 LRERNQQRQEARREREELQRE-------EERLVQKEEQLDARAEKLDNLENQLEEREKALSAREL 119 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555 4456666666666666666666655555554444443
No 62
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.39 E-value=53 Score=37.72 Aligned_cols=114 Identities=24% Similarity=0.342 Sum_probs=69.1
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHhHHHHHHhhHhhhhHHHHHHHHHHHHHhhHHHHhhhhhHhHHHHHHHHHHHHHHH
Q 048767 568 EEERIKRDKQLAEDHIKREWEALEVAKESFKATMDHEQSMITEKAESERRQLLHDFELQKRKLESDMQNRQEELEKDLKE 647 (1041)
Q Consensus 568 E~erLK~Ek~~~~~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLe~~~~~rqEE~E~~L~E 647 (1041)
=-+.|+++|..+--.|.++-|.|.-.=-.=.+.+.+|+..+...+..|...++.-+.-+=..|+.++...+.++++-.++
T Consensus 85 kl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~E 164 (310)
T PF09755_consen 85 KLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRRE 164 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35667777777766666665555533333445556666666666666666666666555566676666666666655444
Q ss_pred H---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 648 K---ERLFEEEKERELSNINYLRDIARKEMEEMKLERLKLEKEK 688 (1041)
Q Consensus 648 R---Ek~FEeek~~EL~~In~lke~a~kE~E~v~lE~~rLekEr 688 (1041)
+ |.+.|.+-+ +|...+-+-|.++..|...|+..-
T Consensus 165 KVdlEn~LE~EQE-------~lvN~L~Kqm~~l~~eKr~Lq~~l 201 (310)
T PF09755_consen 165 KVDLENTLEQEQE-------ALVNRLWKQMDKLEAEKRRLQEKL 201 (310)
T ss_pred HHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 233333332 344556777788887777777653
No 63
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=88.10 E-value=83 Score=39.62 Aligned_cols=479 Identities=24% Similarity=0.262 Sum_probs=244.8
Q ss_pred cccCCCCCCCCCCccccHHHHH-HHHHHHHHHHhh----hhhcchhheeeccchhhhHHHHHHHHHHHHHHHHH------
Q 048767 44 AFTEPRTPQNGVGLADDVESLA-EKVSKLENELFE----YQYNMGLLLIEKKEWSSKYEELKQTFAEAKDALKR------ 112 (1041)
Q Consensus 44 af~~~~~p~~~~~~~~D~~aLi-a~iskLE~Elyd----YQynMGLLLiEkKEwtSk~eel~qa~~ea~~~lKR------ 112 (1041)
-|+-+.||-+|.+.+.|++-.- -.+..|+.-.|- ||-.+...=+|--+-.|.. -.--+.+|+-|-+-
T Consensus 22 pf~~~~~s~~~e~~d~~~~~qk~n~~~~l~~~~~~~~~~~~egl~~~~~ense~ms~L--ySKL~~EaEKIk~WKv~ves 99 (786)
T PF05483_consen 22 PFAMTNLSKNGENIDSDPALQKVNFLPMLEQVDNSDSCHYQEGLKDSDFENSEPMSRL--YSKLYKEAEKIKKWKVQVES 99 (786)
T ss_pred cccccccccccccCCccHHHHHhcchhHHHHhccccchhhhhccccccccccHHHHHH--HHHHHHHHHHHHHHHhhhhH
Confidence 3444556678888877877331 223455555544 4444444445544433210 01113344332210
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhhhHHHH-----HhHHHHHH---HHHhhhhhhhhc-----------------chhhh
Q 048767 113 EQAAHLIAITDVEKREENLRKALGVEKQCV-----LDLEKALR---EMRSENAEIKFT-----------------ADSKL 167 (1041)
Q Consensus 113 EqaAhl~ALsEaeKREEnLkKALgvEKqCV-----adLEKAL~---emr~E~AEiK~t-----------------sesKL 167 (1041)
|=.-.=.-|.+.++==|+.|||+- |=|+. .-||.-+. +++.++.-|+.. +++=-
T Consensus 100 d~~qKErkLqenrk~IEaqrKaIq-ELQf~NE~lSlKLee~i~en~dL~k~nnaTR~lCNlLKeT~~rsaEK~~~yE~ER 178 (786)
T PF05483_consen 100 DLKQKERKLQENRKIIEAQRKAIQ-ELQFENEKLSLKLEEEIQENKDLRKENNATRHLCNLLKETCQRSAEKMKKYEYER 178 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHhHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001112357788888888888863 22221 11333332 234443333321 12222
Q ss_pred HHHHHHHHH----HhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhHHHHHHHHHhHHHHHHhhhhhhhHHHhhh
Q 048767 168 AEANALVTS----IEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRESALRMERASFIAEREAYEGTFSQQRED 243 (1041)
Q Consensus 168 aEA~aLv~~----~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~ 243 (1041)
.|-+.|..+ |++=....|.=. .+||++|- ++--||++--..-..|..+ +..|+-.+|++++.----
T Consensus 179 EET~qly~~l~~niekMi~aFEeLR-----~qAEn~r~--EM~fKlKE~~~k~~~leee---y~~E~n~kEkqvs~L~~q 248 (786)
T PF05483_consen 179 EETRQLYMDLNENIEKMIAAFEELR-----VQAENDRQ--EMHFKLKEDYEKFEDLEEE---YKKEVNDKEKQVSLLQTQ 248 (786)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH-----HHHHhHHH--HHHHHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHH
Confidence 333443332 222222222222 34554442 1111344333333333332 567788888888877777
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhhhhhh-------hhHHHHHHhhh-
Q 048767 244 LREWERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKE-------DDINKRLANLI- 315 (1041)
Q Consensus 244 L~EweKkLqe~eerL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~~~~~Lk~ke-------ddi~~rl~~L~- 315 (1041)
+.+-+-++++..--|-+.|..+||=++..+.-.-.|+....+-+.+...++.++..|.... .++..-...+.
T Consensus 249 ~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~q 328 (786)
T PF05483_consen 249 LKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQ 328 (786)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888888889999999999888888888888888888888887777775433 33333222221
Q ss_pred -hhHHH--HHHHHhhhhhhHHHHHHHHHHHhhhh---HHHHHHHHHHhHhhHHhhhhhhhHHHHHHhhchHHHHHHHHHH
Q 048767 316 -TKEKE--YDAARKSLEMKEEELRQLEEKLNARE---KVEVEKLLDEHKASLDAKQREFDLEIDQKRKAFDDDLKSKVVE 389 (1041)
Q Consensus 316 -~kEke--~~~~~~~Le~KEkeLl~leEKL~aRE---~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~deel~~K~~~ 389 (1041)
..|++ +.............+..|+-+++.=. ..++|.+- .++....-+=+||..+-..+++..+.+..
T Consensus 329 lt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~-----~~ed~lk~l~~eLqkks~eleEmtk~k~~- 402 (786)
T PF05483_consen 329 LTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLK-----KNEDQLKILTMELQKKSSELEEMTKQKNN- 402 (786)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHhhHHHHHHHHHhhh-
Confidence 12222 12222222223344445555554433 24555552 23333344456666666666666655432
Q ss_pred HHHHhhhhhhhHHHHHHHH------HHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHhhHHHHHHH
Q 048767 390 VEKKEAEINHKEEKIAKRE------MALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQLLADKEDILTE 463 (1041)
Q Consensus 390 ~e~rEvel~h~Eekl~krE------qaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~aeEK~le~ek~~L~~dkeei~~l 463 (1041)
+|+++...-.-|++.. .-+++-.+.|+..+.+|... |.-+++.+.-.+-. |-...+.=..+
T Consensus 403 ---ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~l---lq~~ekev~dLe~~-------l~~~~~~eq~y 469 (786)
T PF05483_consen 403 ---KEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGL---LQIREKEVHDLEIQ-------LTTIKESEQHY 469 (786)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHH-------HHHHHHhhHHH
Confidence 2333333333333332 33555556666666666554 33344444444444 43333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 464 KAELEKIRDANEQQLLKIYEEKNQLR-------ISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKE 536 (1041)
Q Consensus 464 K~elEK~~a~~e~q~~qi~ee~e~Lk-------iteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~E 536 (1041)
-..++.++..++++..+-.+-..+.. .+.-+++....=-.++.+-|...+.|.+-++++++.|......+-.|
T Consensus 470 skQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrne 549 (786)
T PF05483_consen 470 SKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNE 549 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433322222111111 11122222222223567788899999999999999998888888778
Q ss_pred HHHhHHHHHHHHHHHHHH
Q 048767 537 WEQLDEKRAEVEKELKKI 554 (1041)
Q Consensus 537 WE~LDEKR~el~KE~~~I 554 (1041)
.+.+-+.-+.-.-|.++-
T Consensus 550 les~~eel~~k~~Ev~~k 567 (786)
T PF05483_consen 550 LESVKEELKQKGEEVKCK 567 (786)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777766655555555553
No 64
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=87.17 E-value=7.9 Score=47.68 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=0.0
Q ss_pred hhhhhhhhhhHHHHHHhhhhhHHHHHHHHhhhhhhHHHHHHHHH
Q 048767 297 NLSLMRKEDDINKRLANLITKEKEYDAARKSLEMKEEELRQLEE 340 (1041)
Q Consensus 297 ~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leE 340 (1041)
...|++....+..||..+-.-+.++..++.....-|.++..|.-
T Consensus 283 ~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~s 326 (722)
T PF05557_consen 283 VELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWES 326 (722)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666667777777766666666666666666666665543
No 65
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=86.83 E-value=80 Score=38.07 Aligned_cols=149 Identities=25% Similarity=0.296 Sum_probs=80.4
Q ss_pred hhhhHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 438 TMKSEEKNLETEKKQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEE 517 (1041)
Q Consensus 438 sL~aeEK~le~ek~~L~~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke 517 (1041)
.|.+..++|+.-+..|.+=+.++..+...++.++.+++..+..+..-+++.......= +-|..++..+|....
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v-------~~L~~eL~~~r~eLe 354 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEV-------SSLEAELNKTRSELE 354 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------hhHHHHHHHHHHHHH
Confidence 3677778888888888888888888888888888888877777777666654443332 334444444544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHhHHHHHHhHHHH
Q 048767 518 MLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEERIKRDKQLAEDHIKREWEALEVAKESF 597 (1041)
Q Consensus 518 ~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~erLK~Ek~~~~~~~krelE~L~~ekEsF 597 (1041)
.+..+..+.+. .|..|--.-.++..|++....+- .....|-..++.+-..++..+.-=-..|......+
T Consensus 355 a~~~~e~~~k~-------~~~~l~~~Lqql~~Eae~Ak~ea----~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ 423 (522)
T PF05701_consen 355 AAKAEEEKAKE-------AMSELPKALQQLSSEAEEAKKEA----EEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA 423 (522)
T ss_pred HHHhhhcchhh-------hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333322221 22222222233333333222111 11224555566666666655555555555555555
Q ss_pred HHhhHhh
Q 048767 598 KATMDHE 604 (1041)
Q Consensus 598 ~~~M~hE 604 (1041)
.+-..-|
T Consensus 424 eaaKasE 430 (522)
T PF05701_consen 424 EAAKASE 430 (522)
T ss_pred HHHHHHH
Confidence 4444433
No 66
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=86.72 E-value=5.7 Score=48.90 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048767 634 MQNRQEELEKDLKEKERLFEEEK 656 (1041)
Q Consensus 634 ~~~rqEE~E~~L~EREk~FEeek 656 (1041)
..+|..-+--.+..+-..|-+--
T Consensus 618 ~ekr~~RLkevf~~ks~eFr~av 640 (722)
T PF05557_consen 618 AEKRNQRLKEVFKAKSQEFREAV 640 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566777777787653
No 67
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=85.63 E-value=1.4e+02 Score=39.81 Aligned_cols=26 Identities=31% Similarity=0.210 Sum_probs=20.0
Q ss_pred hhhhhcHHHHHHHhHHHHHHHHHHHHH
Q 048767 703 VGIRKDIDMLVGLTKMLKEQREQIVKE 729 (1041)
Q Consensus 703 ~em~kdIeeL~~ls~KLk~QRE~~~~e 729 (1041)
.|++| +-+|..++.+|...|.-..++
T Consensus 1018 ~EkrK-v~~L~qlr~~l~k~~l~~q~~ 1043 (1317)
T KOG0612|consen 1018 KEKRK-VMELSQLRTKLNKLRLKNQKE 1043 (1317)
T ss_pred HHHHH-HHHHHHHHHHHHHHhhhhHHH
Confidence 46788 889999999988887655544
No 68
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=84.78 E-value=79 Score=36.16 Aligned_cols=54 Identities=17% Similarity=0.412 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHhhHHHHHH
Q 048767 409 MALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQLLADKEDILT 462 (1041)
Q Consensus 409 qaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~aeEK~le~ek~~L~~dkeei~~ 462 (1041)
..|..+...+.++--++-.+.+.+.++=+++++....|-.+-.+|-..+.+++.
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~ 83 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINA 83 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666666666666666666666655543
No 69
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.58 E-value=34 Score=37.55 Aligned_cols=84 Identities=24% Similarity=0.301 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcHHHHHHHhHHHHHH
Q 048767 643 KDLKEKERLFEEEKERELSNINYLRDIARKEMEEMKLERLKLEKEKQEVDSHRKHLEGEQVGIRKDIDMLVGLTKMLKEQ 722 (1041)
Q Consensus 643 ~~L~EREk~FEeek~~EL~~In~lke~a~kE~E~v~lE~~rLekEr~Ei~~~ke~le~e~~em~kdIeeL~~ls~KLk~Q 722 (1041)
..|+.+-..|+.-+..-++.+.++...- +=+++..-|+..|..||. ..-+++-.|+.||..|.+.-+.++..
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~-------~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERM-------AHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888888777654 445555555555555554 45567778889999988888888877
Q ss_pred HHHHHHHHHHHH
Q 048767 723 REQIVKERDRFL 734 (1041)
Q Consensus 723 RE~~~~eRe~f~ 734 (1041)
|......=.+++
T Consensus 76 r~~~~~~i~r~~ 87 (230)
T PF10146_consen 76 RNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHH
Confidence 776544333333
No 70
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.51 E-value=1.1e+02 Score=37.58 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcHHHHHHHh
Q 048767 673 EMEEMKLERLKLEKEKQEVDSHRKHLEGEQVGIRKDIDMLVGLT 716 (1041)
Q Consensus 673 E~E~v~lE~~rLekEr~Ei~~~ke~le~e~~em~kdIeeL~~ls 716 (1041)
.+.++.-++..++++..++..+...+.++...+.++|+.+...-
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555544433
No 71
>PRK09039 hypothetical protein; Validated
Probab=83.15 E-value=47 Score=38.06 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=76.9
Q ss_pred HHHhhhhhHHHHHhHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhh
Q 048767 131 LRKALGVEKQCVLDLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSH 210 (1041)
Q Consensus 131 LkKALgvEKqCVadLEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~ 210 (1041)
|=-.|+.+..+-++|+-.|.+|+..+. ++...-+.+....++...-..+++..+....+.|++..-.++++.+...
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~----~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~ 140 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLS----AAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVE 140 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 777899999999999999999999887 3333333333333322222346667777667777777777777777777
Q ss_pred hhhhHHHHHHHHHhHHHHHHhhhhhhhHHHhhhHHHH
Q 048767 211 ELESRESALRMERASFIAEREAYEGTFSQQREDLREW 247 (1041)
Q Consensus 211 eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~Ew 247 (1041)
-+-+.=..||.++.+..++..+.|.....++..+.+-
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777788877777777777766664444333333
No 72
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.92 E-value=1.3e+02 Score=37.26 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=43.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHH
Q 048767 451 KQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSE 504 (1041)
Q Consensus 451 ~~L~~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~Lqse 504 (1041)
..++.=...|.+-|.||.||+..+-.=...|..-..+|.-|-...+|++-=-++
T Consensus 491 ~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAK 544 (594)
T PF05667_consen 491 RRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAK 544 (594)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 345555567778888999999999998899999999999998888888765555
No 73
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=82.33 E-value=98 Score=35.36 Aligned_cols=166 Identities=22% Similarity=0.307 Sum_probs=106.7
Q ss_pred HHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 048767 411 LEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRI 490 (1041)
Q Consensus 411 Le~k~~~lkeKEkdl~~K~k~LkEkEksL~aeEK~le~ek~~L~~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~Lki 490 (1041)
|-+...++..|.-=++=+++-|..-...|...-.-+......|.++-+-+..+...+....+.+..+..++.+....+..
T Consensus 121 lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~ 200 (312)
T smart00787 121 LVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED 200 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 44455566666666666666666555555444444444444444444444455555444444444444444333332221
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 048767 491 SEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEE 570 (1041)
Q Consensus 491 teeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~e 570 (1041)
- +-.++..+..+|+ ..=.+-....++.++++.+...-...++..-+++.+++.+.......++....|=-.|-.
T Consensus 201 ~--d~~eL~~lk~~l~----~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~ 274 (312)
T smart00787 201 C--DPTELDRAKEKLK----KLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIE 274 (312)
T ss_pred C--CHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 1 1455555554444 444555566677888999999999999999999999999988888888888888889999
Q ss_pred HhHHHHHHHHHH
Q 048767 571 RIKRDKQLAEDH 582 (1041)
Q Consensus 571 rLK~Ek~~~~~~ 582 (1041)
+|+..-..++..
T Consensus 275 ~Lk~~~~~Le~l 286 (312)
T smart00787 275 KLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHH
Confidence 999888877654
No 74
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=81.20 E-value=46 Score=31.96 Aligned_cols=91 Identities=30% Similarity=0.371 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHhhHH
Q 048767 379 FDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQLLADKE 458 (1041)
Q Consensus 379 ~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~aeEK~le~ek~~L~~dke 458 (1041)
++..|..|+.+...++..+..++..|.++++.|....-.+..-=++-+.|. .-..+..+.+......--.
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~----------~rA~k~a~~e~k~~~~k~~ 81 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKR----------ERAEKRAEEEKKKKEEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 445667777788888888888888888888888887776665444444333 3333344444444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048767 459 DILTEKAELEKIRDANEQQLL 479 (1041)
Q Consensus 459 ei~~lK~elEK~~a~~e~q~~ 479 (1041)
+|..+..+|..+...+..-..
T Consensus 82 ei~~l~~~l~~l~~~~~k~e~ 102 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKLEE 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666555544333
No 75
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.62 E-value=2.6e+02 Score=38.43 Aligned_cols=100 Identities=17% Similarity=0.244 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhhhhhhhcchh-hhHHH-HHHHHHHhhhhHHH---Hhhhhchh---hHH---HHhhhcchHHhhhhhhhh
Q 048767 145 LEKALREMRSENAEIKFTADS-KLAEA-NALVTSIEEKSLEV---EVKLRSVD---AKV---AEINRKSSEIERKSHELE 213 (1041)
Q Consensus 145 LEKAL~emr~E~AEiK~tses-KLaEA-~aLv~~~eeKslEv---E~KL~aAe---akl---AEa~Rk~s~aeRKL~eVE 213 (1041)
+-+|+..|++-.-+...|-+. |.+-. ..|...+=..+.-. .= |+.|. ..+ +-.-.+..++.++|..++
T Consensus 228 v~~~i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~-~r~~eERR~liEEAag~r~rk~eA~kkLe~tE 306 (1486)
T PRK04863 228 VRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADY-MRHANERRVHLEEALELRRELYTSRRQLAAEQ 306 (1486)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHH-hhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888877543 22221 11222211111110 00 11110 001 222345667777777777
Q ss_pred hHHHHHHHHHhHHHHHHhhhhhhhHHHhhhHHHHHH
Q 048767 214 SRESALRMERASFIAEREAYEGTFSQQREDLREWER 249 (1041)
Q Consensus 214 aRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweK 249 (1041)
.+-..+.... .|.+.....+..|.+....|..
T Consensus 307 ~nL~rI~diL----~ELe~rL~kLEkQaEkA~kyle 338 (1486)
T PRK04863 307 YRLVEMAREL----AELNEAESDLEQDYQAASDHLN 338 (1486)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776555 4445555555666666666643
No 76
>PRK12705 hypothetical protein; Provisional
Probab=78.18 E-value=1e+02 Score=37.47 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=31.1
Q ss_pred hhhhhHHHHHHhhchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 048767 365 QREFDLEIDQKRKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESK 428 (1041)
Q Consensus 365 k~eFElElE~kRKs~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K 428 (1041)
+.++|-|+...|..+... ..-+.+||-.+..+.+.+.+++..|+.+...+..++++++.+
T Consensus 65 ~~~~e~e~~~~~~~~~~~----e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 124 (508)
T PRK12705 65 RNQQRQEARREREELQRE----EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL 124 (508)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556665555544332 222555555555555555555555555555555555555544
No 77
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=78.18 E-value=1.4e+02 Score=34.55 Aligned_cols=96 Identities=24% Similarity=0.401 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHhHHHHHHHHH---HHHH
Q 048767 517 EMLLKEAEDLKQQKENF----EKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEE----ERIKRDKQLAED---HIKR 585 (1041)
Q Consensus 517 e~L~kEae~Lk~eKekF----E~EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~----erLK~Ek~~~~~---~~kr 585 (1041)
+-|+|=.+.|+.+|+.+ |.|=|.|. ..|++-+..|-.++-.++..+..|. ++|......++. .++.
T Consensus 80 N~LlKkl~~l~keKe~L~~~~e~EEE~lt---n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~ 156 (310)
T PF09755_consen 80 NTLLKKLQQLKKEKETLALKYEQEEEFLT---NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQE 156 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34566667777777655 44444444 3466666666666666666655444 455556666654 4556
Q ss_pred hHHHHHHhHHHHHHhhHhhhhHHHHHHHHH
Q 048767 586 EWEALEVAKESFKATMDHEQSMITEKAESE 615 (1041)
Q Consensus 586 elE~L~~ekEsF~~~M~hE~s~~~ek~q~E 615 (1041)
+++.|..++-...+.+++|+-.++.+++.-
T Consensus 157 ~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kq 186 (310)
T PF09755_consen 157 ELERLRREKVDLENTLEQEQEALVNRLWKQ 186 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666665543
No 78
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=77.72 E-value=1e+02 Score=37.36 Aligned_cols=70 Identities=17% Similarity=0.261 Sum_probs=42.2
Q ss_pred hhhhhHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 048767 420 DKEKDVESKLKDLNGREKTMKSEEKNLETEKKQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLR 489 (1041)
Q Consensus 420 eKEkdl~~K~k~LkEkEksL~aeEK~le~ek~~L~~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~Lk 489 (1041)
+++++++.+-.-...+|..-....+..+..+.++....+++...+..+++-...+..+...+.++++..+
T Consensus 189 ~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak 258 (489)
T PF05262_consen 189 DKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAK 258 (489)
T ss_pred ccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555555555556666666666666666666666666666666666666666666555555554433
No 79
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=77.14 E-value=1.4e+02 Score=33.92 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Q 048767 455 ADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQI 509 (1041)
Q Consensus 455 ~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEI 509 (1041)
-|.++|..++.+|......++..+..+.+-+..|......-.++.....+|..+|
T Consensus 206 ~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 206 CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777766666666666665555544443333333333333333333
No 80
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=75.73 E-value=81 Score=32.16 Aligned_cols=94 Identities=24% Similarity=0.371 Sum_probs=72.0
Q ss_pred HhhhcchHHhhhhhhhhhHHHHHHHHHhHHHHHHhhhhhhhHHHhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHhhhhhH
Q 048767 197 EINRKSSEIERKSHELESRESALRMERASFIAEREAYEGTFSQQREDLREWERKLQDGEERLVKGQRIVNQREEKANEKE 276 (1041)
Q Consensus 197 Ea~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqe~eerL~~~qr~LNqREe~~~E~~ 276 (1041)
.+.-+..+++-++++++.+-..+..++.||..=...+|.++..-...|.+-..+|.++..+..... .| .
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-~l----------~ 79 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-QL----------N 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-HH----------H
Confidence 344455667778888888989999999999998999999999999999998888888888776544 23 3
Q ss_pred HHHHHhHHhHHHHHHhHHHhhhhhh
Q 048767 277 KIFKQKEKDLEEAQEKIDATNLSLM 301 (1041)
Q Consensus 277 ~~l~~kekeLEe~qkkie~~~~~Lk 301 (1041)
+-+...+.+|+.+.+.+..+...|.
T Consensus 80 rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888887776666663
No 81
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=75.59 E-value=2.6e+02 Score=36.33 Aligned_cols=104 Identities=21% Similarity=0.385 Sum_probs=71.5
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHHHHHhHhhHHhhhhhhhHHHHHHhhch---HHHHHHHHHHHHHHhhhhhhhHHHHH
Q 048767 329 EMKEEELRQLEEKLNAREKVEVEKLLDEHKASLDAKQREFDLEIDQKRKAF---DDDLKSKVVEVEKKEAEINHKEEKIA 405 (1041)
Q Consensus 329 e~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~---deel~~K~~~~e~rEvel~h~Eekl~ 405 (1041)
-..+..|.+||-++.-+|. +.|+| ++-.+.+..-+.+-|.|||+-+--+ +++|-+|+.++--.=.+|+..=..|.
T Consensus 102 k~~~sQiriLQn~c~~lE~-ekq~l-Q~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt 179 (1265)
T KOG0976|consen 102 KHHESQIRILQNKCLRLEM-EKQKL-QDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELN 179 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHh
Confidence 3456667777777777763 44544 3344556666777788888776544 45666777777777677777777777
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhhh
Q 048767 406 KREMALEKRLEKCKDKEKDVESKLKDLNG 434 (1041)
Q Consensus 406 krEqaLe~k~~~lkeKEkdl~~K~k~LkE 434 (1041)
.-+..+..++....+..+.+..|++.+++
T Consensus 180 ~~~~q~~tkl~e~~~en~~le~k~~k~~e 208 (1265)
T KOG0976|consen 180 EFNMEFQTKLAEANREKKALEEKLEKFKE 208 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777787777777888877777654
No 82
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=74.83 E-value=2.4e+02 Score=35.69 Aligned_cols=54 Identities=31% Similarity=0.506 Sum_probs=29.9
Q ss_pred HHHHhhchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHhhhh
Q 048767 372 IDQKRKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKC-KDKEKDVESKLKDLN 433 (1041)
Q Consensus 372 lE~kRKs~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~l-keKEkdl~~K~k~Lk 433 (1041)
+-++|+.+|.|++.-++++-.+|-.+..+|..+ ..++.. ++-++|.+.-+.+|-
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~--------~~lr~~~~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL--------QELRKYEKESEKDTEVLMSALS 597 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhhhhHHHHHHHHH
Confidence 444555555555555556666666666666655 222333 455556665555554
No 83
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=74.76 E-value=1.1e+02 Score=33.63 Aligned_cols=79 Identities=25% Similarity=0.281 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 458 EDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKE 536 (1041)
Q Consensus 458 eei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~E 536 (1041)
+.|..+..+..+....+......|..--+++++.++++..+-..+.++.+++..++.+.....+|-..|.++...++.+
T Consensus 12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~ 90 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAE 90 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888889999999999989999999999998888888888887777776666655555555444444433
No 84
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=74.22 E-value=80 Score=39.12 Aligned_cols=74 Identities=18% Similarity=0.164 Sum_probs=42.7
Q ss_pred hhcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHHh--------hhhhhhhhHHHHHHHHHhHHHHHHh
Q 048767 160 KFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIE--------RKSHELESRESALRMERASFIAERE 231 (1041)
Q Consensus 160 K~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~ae--------RKL~eVEaRE~~LrRerlSf~~Ere 231 (1041)
....+.|...+..-..-+.+...++..+|..|++.++.--+++..+. .+|.++..+=...+-++....+-..
T Consensus 182 ~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~ 261 (754)
T TIGR01005 182 AGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTAD 261 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666777777777788888777777666544422 3444444444444444444444444
Q ss_pred hh
Q 048767 232 AY 233 (1041)
Q Consensus 232 a~ 233 (1041)
..
T Consensus 262 ~l 263 (754)
T TIGR01005 262 SV 263 (754)
T ss_pred HH
Confidence 33
No 85
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=73.83 E-value=1.4e+02 Score=32.75 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=29.5
Q ss_pred HHhHHHHHHhHHHHHHhhHhhhhHHHH---HHHHHHHHHhh-HHHHhhh
Q 048767 584 KREWEALEVAKESFKATMDHEQSMITE---KAESERRQLLH-DFELQKR 628 (1041)
Q Consensus 584 krelE~L~~ekEsF~~~M~hE~s~~~e---k~q~Erad~l~-d~E~qkr 628 (1041)
+.+|-..+..++.|+...++||..|.+ |+-.=..|+.. =++|-+|
T Consensus 144 ~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~r 192 (202)
T PF06818_consen 144 RAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQR 192 (202)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677888999999999999974 33333444443 3455444
No 86
>PRK09039 hypothetical protein; Validated
Probab=71.54 E-value=2e+02 Score=33.20 Aligned_cols=18 Identities=17% Similarity=0.374 Sum_probs=11.7
Q ss_pred hhhhhHHHHHHHHHHHhh
Q 048767 327 SLEMKEEELRQLEEKLNA 344 (1041)
Q Consensus 327 ~Le~KEkeLl~leEKL~a 344 (1041)
.+..++++|..|+..|+.
T Consensus 47 ~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 47 EISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 345666777777777665
No 87
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.51 E-value=1.7e+02 Score=35.49 Aligned_cols=109 Identities=22% Similarity=0.286 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHh
Q 048767 507 EQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEERIKRDKQLAEDHIKRE 586 (1041)
Q Consensus 507 eEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~erLK~Ek~~~~~~~kre 586 (1041)
.+++..|+.-+++..|++.|+++-..-+++=..+.-|-.+++--+++...|...+. .+...|....+.-+.+++..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~----E~n~~l~knq~vw~~kl~~~ 422 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER----EENKKLIKNQDVWRGKLKEL 422 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHH
Confidence 58889999999999999999988888888887777777777777777776655444 44455666666666666666
Q ss_pred HHHHHHhHHHHHHhhHhhhhHHHHHHHHHHHHHhhHHHHhhhhhHhHHHHHH
Q 048767 587 WEALEVAKESFKATMDHEQSMITEKAESERRQLLHDFELQKRKLESDMQNRQ 638 (1041)
Q Consensus 587 lE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLe~~~~~rq 638 (1041)
-+.++.+.-+.-. ++.|++-|=|+|=.-|...+
T Consensus 423 ~e~~~~~~~s~d~-------------------~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 423 EEREKEALGSKDE-------------------KITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHhHheehhhhh
Confidence 6655544443332 33377777777665555444
No 88
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=68.26 E-value=4.3e+02 Score=35.78 Aligned_cols=70 Identities=23% Similarity=0.320 Sum_probs=40.0
Q ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 048767 480 KIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISE 556 (1041)
Q Consensus 480 qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~e 556 (1041)
......+.+...++.-..+..+..+|..+.+.+|.+.-.+..+..+|+.+-. .|.+.-..+.++...+-+
T Consensus 582 ~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~-------sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 582 ENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEIS-------SLEETLKAGKKELLKVEE 651 (1317)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHhhhhHHHHHHH
Confidence 3334445555566666666666777777777777777666666666655433 344444444444444443
No 89
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=67.44 E-value=3.6e+02 Score=34.63 Aligned_cols=67 Identities=21% Similarity=0.372 Sum_probs=41.4
Q ss_pred eccchhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hhhhHH------HHHhHHHHHHHHHhhh
Q 048767 88 EKKEWSSKYEELKQTFAEAKDALKREQAAHLIAITDVEKREENLRKA---LGVEKQ------CVLDLEKALREMRSEN 156 (1041)
Q Consensus 88 EkKEwtSk~eel~qa~~ea~~~lKREqaAhl~ALsEaeKREEnLkKA---LgvEKq------CVadLEKAL~emr~E~ 156 (1041)
||-++-..+..+..---.+..|..--.-||.--|+|.+-|++-|-.. ..-|.| || |-.||-+||=.|
T Consensus 397 era~l~a~w~rv~egrr~v~~mv~~grk~~~~~~~e~~ar~~~l~~v~re~eeer~aalias~~--l~ea~~~irlqy 472 (828)
T PF04094_consen 397 ERAALDAEWARVDEGRRAVDAMVEVGRKAHQAHLAEIQAREETLDSVMRETEEERQAALIASSV--LDEALGDIRLQY 472 (828)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcccccccc
Confidence 33333333344444444566788888889999999999999877542 222333 33 557777776555
No 90
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=67.35 E-value=4.5e+02 Score=35.66 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHH--hhhhHHHHHHHHHHhHhhHHhhhhhhhHHHHHHhhchHHHHH
Q 048767 315 ITKEKEYDAARKSLEMKEEELRQLEEKL--NAREKVEVEKLLDEHKASLDAKQREFDLEIDQKRKAFDDDLK 384 (1041)
Q Consensus 315 ~~kEke~~~~~~~Le~KEkeLl~leEKL--~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~deel~ 384 (1041)
..-|+.+.+.-..|...|.-+..|.-|. ++++-..|+++.+--...--.-++.|+ .|...-..++.=|+
T Consensus 1608 ~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~-~lq~~~~~~~~l~~ 1678 (1758)
T KOG0994|consen 1608 AAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE-ILQKYYELVDRLLE 1678 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3445555555555555555555555544 356667777776654433333334444 44444333333333
No 91
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=66.75 E-value=2.2e+02 Score=31.85 Aligned_cols=72 Identities=19% Similarity=0.321 Sum_probs=40.3
Q ss_pred HHHHHHHHhHhhHHhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 048767 349 EVEKLLDEHKASLDAKQREFDLEIDQKRKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDV 425 (1041)
Q Consensus 349 eIQkLldeh~a~L~~Kk~eFElElE~kRKs~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl 425 (1041)
.|| -||-....|..+..++--.|.. +..++..-..+++-.+.++...+..+..-+..+..-.++++.-+..+
T Consensus 11 ~iq-~lD~e~~rl~~~~~~~~~~l~k----~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 11 AIQ-KLDLEKDRLEPRIKEIRKALKK----AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHH-HHHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 3444444454444444444432 23455555566777777777777777776666665555555444444
No 92
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=66.44 E-value=96 Score=35.27 Aligned_cols=15 Identities=20% Similarity=-0.059 Sum_probs=8.6
Q ss_pred hhhhhhhcHHHHHHH
Q 048767 701 EQVGIRKDIDMLVGL 715 (1041)
Q Consensus 701 e~~em~kdIeeL~~l 715 (1041)
.|.||+-=...+.-|
T Consensus 167 ~W~EINAA~Gq~~LL 181 (314)
T PF04111_consen 167 EWNEINAAWGQTALL 181 (314)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 677777665555443
No 93
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=66.39 E-value=2.2e+02 Score=31.80 Aligned_cols=91 Identities=26% Similarity=0.334 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 048767 519 LLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEERIKRDKQLAEDHIKREWEALEVAKESFK 598 (1041)
Q Consensus 519 L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~erLK~Ek~~~~~~~krelE~L~~ekEsF~ 598 (1041)
|.-|.+-++......+.|-..|++.++.|++++....+.-.++++-+...+.++..+-..++ ++...+.-+++...
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~----e~~~~~~~~~~~L~ 169 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIR----EEGQELSSKREELK 169 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 33444444555555555555556666666666666666666666666566666666655544 34566778888888
Q ss_pred HhhHhhhhHHHHHHH
Q 048767 599 ATMDHEQSMITEKAE 613 (1041)
Q Consensus 599 ~~M~hE~s~~~ek~q 613 (1041)
.+|.-+=...++++-
T Consensus 170 ~~l~~ell~~yeri~ 184 (239)
T COG1579 170 EKLDPELLSEYERIR 184 (239)
T ss_pred HhcCHHHHHHHHHHH
Confidence 888876666665553
No 94
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=64.81 E-value=1.8e+02 Score=30.32 Aligned_cols=66 Identities=20% Similarity=0.355 Sum_probs=48.8
Q ss_pred HhhhhchhhHHHHhhhcchHHhhhhhhhhhHHHHHHHHHhHHHHHHh---------hhhhhhHHHhhhHHHHHHHhhh
Q 048767 185 EVKLRSVDAKVAEINRKSSEIERKSHELESRESALRMERASFIAERE---------AYEGTFSQQREDLREWERKLQD 253 (1041)
Q Consensus 185 E~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Ere---------a~E~~i~~QRe~L~EweKkLqe 253 (1041)
..|+..|...+.++.++...+.+++.++-. .++.+.-.|..++- =.+..|..+++.+..|+.-|.|
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~---~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~~ 236 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISE---NIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLPE 236 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 345556666777777777777777777753 47788888887765 3477888999999999987753
No 95
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=64.78 E-value=74 Score=35.48 Aligned_cols=83 Identities=31% Similarity=0.374 Sum_probs=67.9
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 048767 495 RAEYLRLQ-----SELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEE 569 (1041)
Q Consensus 495 R~E~l~Lq-----seLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~ 569 (1041)
|.=+-+|| |.||+-.+.||-.-+++.+|-+.|..+-+..+.|++.+.+.-..|+.|.-.+.+.+.++. .|-
T Consensus 118 RAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~----~ev 193 (290)
T COG4026 118 RAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP----GEV 193 (290)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch----hHH
Confidence 44455666 899999999999999999999999999999999999999999999999988887765543 456
Q ss_pred HHhHHHHHHHHH
Q 048767 570 ERIKRDKQLAED 581 (1041)
Q Consensus 570 erLK~Ek~~~~~ 581 (1041)
.+|+..-+.+.+
T Consensus 194 ~~L~~r~~ELe~ 205 (290)
T COG4026 194 YDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHhcc
Confidence 667666555544
No 96
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=63.99 E-value=1.6e+02 Score=29.44 Aligned_cols=72 Identities=24% Similarity=0.412 Sum_probs=49.5
Q ss_pred HHHHHhhhhhHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 048767 415 LEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLR 489 (1041)
Q Consensus 415 ~~~lkeKEkdl~~K~k~LkEkEksL~aeEK~le~ek~~L~~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~Lk 489 (1041)
..+|+++-.++..++..+..++..+ .+.+......+...++++..++.-++-.++....+.++...+.++|+
T Consensus 75 ~~rL~~~~~~~ere~~~~~~~~~~l---~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 75 VERLKEQLEELERELASAEEKERQL---QKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433344444444444444433 34456666778888999999999999999999999999888777765
No 97
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=63.97 E-value=1.1e+02 Score=34.77 Aligned_cols=67 Identities=37% Similarity=0.527 Sum_probs=17.9
Q ss_pred hcccHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 048767 488 LRISEEERAEYLRLQSELK------EQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKI 554 (1041)
Q Consensus 488 LkiteeER~E~l~LqseLK------eEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I 554 (1041)
+..+..|+..|...-.+|. .+++.+......|.+|...|.++-...|.|=+.|+.-...++.+...+
T Consensus 18 ~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 18 LEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp ------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555554444443 233333333333334444444444444443333333333343333333
No 98
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=63.49 E-value=2.8e+02 Score=31.97 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=11.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 048767 631 ESDMQNRQEELEKDLKEKERLFE 653 (1041)
Q Consensus 631 e~~~~~rqEE~E~~L~EREk~FE 653 (1041)
|..+-.+..+++..|..+.++.+
T Consensus 133 E~~lvq~I~~L~k~le~~~k~~e 155 (294)
T COG1340 133 ERELVQKIKELRKELEDAKKALE 155 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555554433
No 99
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=63.47 E-value=1.9e+02 Score=29.95 Aligned_cols=67 Identities=28% Similarity=0.452 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 048767 505 LKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEER 571 (1041)
Q Consensus 505 LKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~er 571 (1041)
|--+++.....++.+..+++.-+.+-..++.+-+.+...+..|.-|+..+..+|+.|.+.+.....+
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~k 95 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEK 95 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777888889999999999999999999999999999999999997777777666444333
No 100
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=61.58 E-value=1.9e+02 Score=31.86 Aligned_cols=91 Identities=18% Similarity=0.254 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---Hh
Q 048767 492 EEERAEYLRLQSELKEQIGKCRLQEE---MLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEK---EK 565 (1041)
Q Consensus 492 eeER~E~l~LqseLKeEId~~R~Qke---~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~---~~ 565 (1041)
..=..+|-.+-..|.++++.++.... ++.+|.+.|-+||..+..|--+|..=.-.|+...+....+|.+... .+
T Consensus 7 r~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~ 86 (230)
T PF10146_consen 7 RNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRL 86 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777776665543 3445666666666666666655555555555555544444433322 12
Q ss_pred hhHHHHhHHHHHHHHHH
Q 048767 566 LSEEERIKRDKQLAEDH 582 (1041)
Q Consensus 566 ~~E~erLK~Ek~~~~~~ 582 (1041)
+.|...||.+-+.++..
T Consensus 87 ~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 87 YEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 23444555554444443
No 101
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=57.83 E-value=4.1e+02 Score=32.09 Aligned_cols=67 Identities=22% Similarity=0.307 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhhhhcchhhe----eeccchhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048767 64 LAEKVSKLENELFEYQYNMGLLL----IEKKEWSSKYEELKQTFAEAKDALKREQAAHLIAITDVEKREEN 130 (1041)
Q Consensus 64 Lia~iskLE~ElydYQynMGLLL----iEkKEwtSk~eel~qa~~ea~~~lKREqaAhl~ALsEaeKREEn 130 (1041)
+-+-+..|...|++||+.-.-.+ ==++=-..+..-|+.-+...+..++++...+..+..++-+|--+
T Consensus 121 ~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~ 191 (511)
T PF09787_consen 121 LDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLK 191 (511)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 35566778888999943321111 00111123337778888888889999999988888887776533
No 102
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=56.16 E-value=5.5e+02 Score=33.04 Aligned_cols=145 Identities=23% Similarity=0.254 Sum_probs=73.6
Q ss_pred hHHHHhhhcchHHhhhhhhhhhHHHHHHHHHhHHHHHHhhhhhhhHHHhhh---HHHHHHHhhhhhhhhhhhhh----hh
Q 048767 193 AKVAEINRKSSEIERKSHELESRESALRMERASFIAEREAYEGTFSQQRED---LREWERKLQDGEERLVKGQR----IV 265 (1041)
Q Consensus 193 aklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~---L~EweKkLqe~eerL~~~qr----~L 265 (1041)
+.-+|+...-+++++|.+-.=---|+||++.-|++-|.-+. |.+ .- -.|.=..|+...+-|.+-|- +|
T Consensus 402 sl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~---l~~--DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iI 476 (961)
T KOG4673|consen 402 SLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAA---LLK--DELAEKDEIINQLMAEGEKLSKKQLAQSAII 476 (961)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh---hhh--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34456666666677776666666678888888887665442 111 11 12334556666666655541 22
Q ss_pred hhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhhhhhh-------hhHHHHHHhhhhhHHHHHHHHhhhhhhHHHHHHH
Q 048767 266 NQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKE-------DDINKRLANLITKEKEYDAARKSLEMKEEELRQL 338 (1041)
Q Consensus 266 NqREe~~~E~~~~l~~kekeLEe~qkkie~~~~~Lk~ke-------ddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~l 338 (1041)
..=--++.+++.++..+.+-+-.++.....-+..|..|+ ..|..--+.++..++.+.-.+...+.+|..++.+
T Consensus 477 kKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~ 556 (961)
T KOG4673|consen 477 KKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAE 556 (961)
T ss_pred HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 222223444454444444333333333333344443333 3344444555555555555555555555555555
Q ss_pred HHHH
Q 048767 339 EEKL 342 (1041)
Q Consensus 339 eEKL 342 (1041)
|..+
T Consensus 557 qat~ 560 (961)
T KOG4673|consen 557 QATN 560 (961)
T ss_pred HHhh
Confidence 4433
No 103
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=54.99 E-value=1.7e+02 Score=36.69 Aligned_cols=61 Identities=31% Similarity=0.342 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 048767 491 SEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKIS 555 (1041)
Q Consensus 491 teeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~ 555 (1041)
.+.|-+++.+.=.+||.+|++++.+-..+..+++ .+..-.+|-+.+|..-..|++++..=.
T Consensus 434 l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 434 LEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777777888888888888888887776 455666788888888888888776544
No 104
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=54.44 E-value=6.8e+02 Score=33.53 Aligned_cols=85 Identities=26% Similarity=0.316 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 457 KEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKE 536 (1041)
Q Consensus 457 keei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~E 536 (1041)
.+.+..+-.......+..++-.-+|......|.-..-|.+-+.-+-.+||+++-+|=-|-..+..=++.|.+.+-..|.|
T Consensus 466 ~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~E 545 (1195)
T KOG4643|consen 466 NEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEE 545 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34444444445555555555555566666666666666666777778899999999999999999999999999999988
Q ss_pred HHHhH
Q 048767 537 WEQLD 541 (1041)
Q Consensus 537 WE~LD 541 (1041)
-..|=
T Consensus 546 Na~Ll 550 (1195)
T KOG4643|consen 546 NAHLL 550 (1195)
T ss_pred HHHHH
Confidence 77764
No 105
>PF15462 Barttin: Bartter syndrome, infantile, with sensorineural deafness (Barttin)
Probab=53.02 E-value=33 Score=37.09 Aligned_cols=132 Identities=21% Similarity=0.190 Sum_probs=81.6
Q ss_pred ccccccccccCCcCCCCCCCCCccCCCCC-CcccCCCCCCCCCCCCCcccchHHHHHHHHHHhhccccccccccccCCCC
Q 048767 879 EVEADQHKQVDGQNNLNGKAPEVQENSQP-SDLNHGRQPRKRGRPRVSRTRSVKAVVQDAKAILGEGFELTESENLNGNA 957 (1041)
Q Consensus 879 e~e~~~~~s~~dqs~~ds~~~~~~edsq~-s~~k~gr~~~rr~k~~v~RtrSvkavv~daK~ilge~~~~~e~~~~n~~~ 957 (1041)
..++-++.|.-|-++|--|+....||.-| .....|+.+++-+.+|-+-.+.+.+-|+.|-.|...+
T Consensus 75 wEeaAYdQSLPdfshIQmKvmgysED~rplLap~~gq~q~~~sdgg~g~p~~~qawveaavvvHRgs------------- 141 (224)
T PF15462_consen 75 WEEAAYDQSLPDFSHIQMKVMGYSEDPRPLLAPEPGQPQPGASDGGEGGPRDAQAWVEAAVVVHRGS------------- 141 (224)
T ss_pred hhhhhhhcCCCchhhheeeeeeccCCCCcccCCCcCCCccccCCCCCCCCcchhhhhhheeeeecCC-------------
Confidence 45667888888999999999888888877 5577888888777777777789999998887776555
Q ss_pred CCchhhhhhcCCCCCccCCCCCccccccccccccccccccC---CCCCcccccCCcccCCccccccccCCCCCCCCcccc
Q 048767 958 DDSVQEAAESRGEPSLDDKGTSRNARKRNRAQSSQITTSEH---DVDDSEAQSGSVVVGQPRKRRQKVDPAEQTPVPTRY 1034 (1041)
Q Consensus 958 e~s~~~~~es~~~s~~~~k~~~~~~rKR~r~~~s~~~~se~---d~~dSE~~SdSvt~GgrrKRrq~v~p~~qtpg~~rY 1034 (1041)
++++|+-+.+. +++|--- -.+++.--.|=| |.+-|||.|-.-+.-.+.. .-+|. |-|-.-||
T Consensus 142 -------de~ege~~~tq---s~p~p~~-~pqg~APLASfqddlD~gSsegsSp~pSPp~~ee---p~~p~-~~p~a~r~ 206 (224)
T PF15462_consen 142 -------DEDEGERSPTQ---SRPGPPA-CPQGPAPLASFQDDLDMGSSEGSSPNPSPPEGEE---PHPPP-QEPWACRC 206 (224)
T ss_pred -------ccccCcccccc---CCCCCCC-CCCCCcccccchhhccccccCCCCCCCCCCcccC---CCCCC-CCcccccC
Confidence 34444444433 1111110 001111123334 4566888887444433222 12333 56667788
Q ss_pred ccCC
Q 048767 1035 NLRR 1038 (1041)
Q Consensus 1035 nLRr 1038 (1041)
.|-|
T Consensus 207 ~ld~ 210 (224)
T PF15462_consen 207 QLDR 210 (224)
T ss_pred Cccc
Confidence 7755
No 106
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=52.96 E-value=4e+02 Score=30.47 Aligned_cols=65 Identities=34% Similarity=0.392 Sum_probs=44.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------hhhhhhhhhhhcHHHHHHHhHHHHHH
Q 048767 658 RELSNINYLRDIARKEMEEMKLERLKLEKEKQEVDSHRK--------------HLEGEQVGIRKDIDMLVGLTKMLKEQ 722 (1041)
Q Consensus 658 ~EL~~In~lke~a~kE~E~v~lE~~rLekEr~Ei~~~ke--------------~le~e~~em~kdIeeL~~ls~KLk~Q 722 (1041)
.-|++=|.+=.....||+.|.--+.+|++|....-.-.+ .++.+..-+.+-|+.|.+|-+-|+.+
T Consensus 230 ~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 230 DTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 457788888899999999999999999999876554444 44444444444444444444444443
No 107
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=51.77 E-value=2.6e+02 Score=27.87 Aligned_cols=97 Identities=26% Similarity=0.359 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 457 KEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKE 536 (1041)
Q Consensus 457 keei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~E 536 (1041)
+..+..+...+..++..+..+-.....++++.+--=---.+-..-=..||++...++.+...|-.+++..+.....-+.-
T Consensus 16 ~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s 95 (132)
T PF07926_consen 16 KEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEAS 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666777777777777777777764311111111122234677778888888888888888888877777777
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 048767 537 WEQLDEKRAEVEKELKKISE 556 (1041)
Q Consensus 537 WE~LDEKR~el~KE~~~I~e 556 (1041)
|+ +-+..|.++...+..
T Consensus 96 w~---~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 96 WE---EQKEQLEKELSELEQ 112 (132)
T ss_pred HH---HHHHHHHHHHHHHHH
Confidence 76 345556555555443
No 108
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=51.74 E-value=8e+02 Score=33.56 Aligned_cols=41 Identities=32% Similarity=0.379 Sum_probs=29.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhh
Q 048767 395 AEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGR 435 (1041)
Q Consensus 395 vel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEk 435 (1041)
.+|+.+|-.....+++|+.+...|.-.|+.+..-+..++++
T Consensus 1710 ~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1710 DRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 35666666677777777777777777777777777776654
No 109
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=50.24 E-value=5.4e+02 Score=31.14 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 456 DKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEK 535 (1041)
Q Consensus 456 dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~ 535 (1041)
+...|...+..|+--++.+..........+.+|..+..|+.. +..+|-.+|..-+...++|-+.+..|+.+..+-|.
T Consensus 169 ~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk---~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~ 245 (420)
T COG4942 169 TLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKK---TLAQLNSELSADQKKLEELRANESRLKNEIASAEA 245 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333333344444444444444444445555556666665554 34677777777888888888888888888877765
Q ss_pred H
Q 048767 536 E 536 (1041)
Q Consensus 536 E 536 (1041)
+
T Consensus 246 ~ 246 (420)
T COG4942 246 A 246 (420)
T ss_pred H
Confidence 4
No 110
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=49.99 E-value=2.8e+02 Score=35.47 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=26.0
Q ss_pred hhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhhh
Q 048767 156 NAEIKFTADSKLAEANALVTSIEEKSLEVEVKLR 189 (1041)
Q Consensus 156 ~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL~ 189 (1041)
..+|+=.|...|...+..+..++....+.-.++.
T Consensus 142 ~g~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~ 175 (782)
T PRK00409 142 EGEVKDSASEKLRGIRRQLRRKKSRIREKLESII 175 (782)
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888889999998888888777766655543
No 111
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=49.67 E-value=5.9e+02 Score=31.40 Aligned_cols=108 Identities=26% Similarity=0.319 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 456 DKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEK 535 (1041)
Q Consensus 456 dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~ 535 (1041)
+|.++.+.-..|+.+++.+... ..+-|.|--.||++||.=-..|++=.+.-+.|. |+|-+|=-
T Consensus 384 EKnd~~k~lqnLqe~la~tqk~-------------LqEsr~eKetLqlelkK~k~nyv~LQEry~~ei----QqKnksvs 446 (527)
T PF15066_consen 384 EKNDIEKTLQNLQEALANTQKH-------------LQESRNEKETLQLELKKIKANYVHLQERYMTEI----QQKNKSVS 446 (527)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH-------------HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHH----HHhhhHHH
Confidence 3444445555555555554443 345677778899999998888888888888887 68889988
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHH
Q 048767 536 EWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEERIKRDKQLAE 580 (1041)
Q Consensus 536 EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~erLK~Ek~~~~ 580 (1041)
.|=.+|-=--.-..|..++...|-.+++-.-+=-++||.||..-.
T Consensus 447 qclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~E 491 (527)
T PF15066_consen 447 QCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETRE 491 (527)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888665555667788888888888888888888988887643
No 112
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=49.16 E-value=2.4e+02 Score=33.19 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=10.4
Q ss_pred cHHHHHHHHHHHHHHHh
Q 048767 60 DVESLAEKVSKLENELF 76 (1041)
Q Consensus 60 D~~aLia~iskLE~Ely 76 (1041)
....|.+.+++|++++.
T Consensus 105 ~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 105 QLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566666777766653
No 113
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=48.85 E-value=2.7e+02 Score=30.78 Aligned_cols=114 Identities=22% Similarity=0.329 Sum_probs=41.2
Q ss_pred hhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhHHHHHHHHHhHHHHHHhhhhhhhHHHhhhHHHHHHHhhhhhhhhh
Q 048767 180 KSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRESALRMERASFIAEREAYEGTFSQQREDLREWERKLQDGEERLV 259 (1041)
Q Consensus 180 KslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqe~eerL~ 259 (1041)
++...+..+..|...|.+.-+.-..++-+++.++.--..|.+.+.-+..+...++.+...+-+.=...+.++.
T Consensus 13 rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~------- 85 (246)
T PF00769_consen 13 RLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR------- 85 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3333333344444444444444444444444444333344444444444444444433333322222233333
Q ss_pred hhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhh
Q 048767 260 KGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSL 300 (1041)
Q Consensus 260 ~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~~~~~L 300 (1041)
+.+..+.+-.+-....+....+.+.+|..++..+..++..|
T Consensus 86 e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 86 EAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332223222333333335555555555444444433
No 114
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=47.72 E-value=5.1e+02 Score=30.18 Aligned_cols=120 Identities=18% Similarity=0.288 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048767 463 EKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDE 542 (1041)
Q Consensus 463 lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDE 542 (1041)
|-..|+.-...|.+---+++.+.-+|.--..++.|+++ +...+=|+.+++|+.+|+..++ .+|+++.+.|.-
T Consensus 4 mtq~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr--~rVrq~V~hVqaqEreLLe~v~------~rYqR~y~ema~ 75 (324)
T PF12126_consen 4 MTQALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIR--ARVRQVVAHVQAQERELLEAVE------ARYQRDYEEMAG 75 (324)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 44556666666777778899999999999999999995 5677889999999999997765 578899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHhHHHHHHh
Q 048767 543 KRAEVEKELKKISEQTEKLEKEKLSEEERIKRDKQLAEDHIKREWEALEVA 593 (1041)
Q Consensus 543 KR~el~KE~~~I~eere~le~~~~~E~erLK~Ek~~~~~~~krelE~L~~e 593 (1041)
+--.|..=+.+|.-==--++++++.-.| +|-.+|...+..-|+.|+.+
T Consensus 76 ~L~~LeavLqRir~G~~LVekM~~YASD---QEVLdMh~FlreAL~rLrqe 123 (324)
T PF12126_consen 76 QLGRLEAVLQRIRTGGALVEKMKLYASD---QEVLDMHGFLREALERLRQE 123 (324)
T ss_pred HHhHHHHHHHHHHhHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHhhhh
Confidence 9999999888887666666666665544 57778888888888877754
No 115
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=46.89 E-value=3.3e+02 Score=29.05 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH
Q 048767 462 TEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAE 497 (1041)
Q Consensus 462 ~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E 497 (1041)
.++..++++...++.-...|...+..+...+..|.+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~ 101 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE 101 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344444444444444444444444444444444433
No 116
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=46.53 E-value=6.3e+02 Score=30.84 Aligned_cols=52 Identities=27% Similarity=0.289 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHHHHHHH
Q 048767 460 ILTEKAELEKIRDANEQQLLKIYEEKNQLRI-SEEERAEYLRLQSELKEQIGK 511 (1041)
Q Consensus 460 i~~lK~elEK~~a~~e~q~~qi~ee~e~Lki-teeER~E~l~LqseLKeEId~ 511 (1041)
|..|+++|+.++.-+..-.++..+...++.. -..-|.|..+||-+|+.|++.
T Consensus 255 i~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~er 307 (552)
T KOG2129|consen 255 IDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELER 307 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4444555555544443333333322222221 234477888899998888875
No 117
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=46.47 E-value=9.4e+02 Score=32.85 Aligned_cols=109 Identities=20% Similarity=0.277 Sum_probs=66.4
Q ss_pred hhhcchhheeeccchhhhHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHhh
Q 048767 78 YQYNMGLLLIEKKEWSSKYEELKQTF--AEAKDALKREQAAHLIAITDVEKREENLRKALGVEKQCVLDLEKALREMRSE 155 (1041)
Q Consensus 78 YQynMGLLLiEkKEwtSk~eel~qa~--~ea~~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E 155 (1041)
=-|.+|.|- .-|+ |+. +.+ ..|..... .--|++.+.|=.-|.-.+..=..=++.|+..+..+..+
T Consensus 712 G~~r~G~l~---G~~~-k~~---a~~IG~~aR~~~R------~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 712 GRFRLGVLR---GAWA-KPA---AEYIGAAARERAR------LRRIAELDARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred Cceeeeeee---cccC-Ccc---hhHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788775 7788 654 212 22333222 23355556666666767766667777788888888877
Q ss_pred hhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhc
Q 048767 156 NAEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRK 201 (1041)
Q Consensus 156 ~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk 201 (1041)
.+. |.++.-|..|+..+..+......+..++..|+..++.+-+.
T Consensus 779 ~~~--~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~ 822 (1353)
T TIGR02680 779 LAG--APSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAA 822 (1353)
T ss_pred HHh--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 643 66777788887777776665555555555555544444443
No 118
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=45.65 E-value=4.3e+02 Score=28.69 Aligned_cols=95 Identities=21% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHhhHhhhhHHHHHHHHHHHHHhhHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHH
Q 048767 596 SFKATMDHEQSMITEKAESERRQLLHDFELQKRKLESDMQNRQEELEKDLKEKERLFE--EEKERELSNINYLRDIARKE 673 (1041)
Q Consensus 596 sF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLe~~~~~rqEE~E~~L~EREk~FE--eek~~EL~~In~lke~a~kE 673 (1041)
+|+.+=.+++..-..++...-.+-...|+-.+.+|......+..+++..|-++++.+- ...-..|..|..+++-..+|
T Consensus 7 ~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~e 86 (206)
T PF14988_consen 7 EYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQERE 86 (206)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048767 674 MEEMKLERLKLEKEKQE 690 (1041)
Q Consensus 674 ~E~v~lE~~rLekEr~E 690 (1041)
|..+.-++.++..+-.+
T Consensus 87 I~~Le~e~~~~~~e~~~ 103 (206)
T PF14988_consen 87 IQTLEEELEKMRAEHAE 103 (206)
T ss_pred HHHHHHHHHHHHHHHHH
No 119
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=44.95 E-value=5e+02 Score=29.22 Aligned_cols=164 Identities=13% Similarity=0.163 Sum_probs=0.0
Q ss_pred hHHHHhhhhchhhHHHHhhhcchHHhhhhhh---------------------hhhHHHHHHHHHhHHHHHHhhhhhhhHH
Q 048767 181 SLEVEVKLRSVDAKVAEINRKSSEIERKSHE---------------------LESRESALRMERASFIAEREAYEGTFSQ 239 (1041)
Q Consensus 181 slEvE~KL~aAeaklAEa~Rk~s~aeRKL~e---------------------VEaRE~~LrRerlSf~~Erea~E~~i~~ 239 (1041)
....+.++..+.+.++-+......+..-+.. +.++...+......|.++...++..+..
T Consensus 76 ~~~~~~~l~~l~~~~~~l~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 155 (423)
T TIGR01843 76 ATDVEADAAELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQLELILAQIKQ 155 (423)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhHHHHHHHhhhhhhhhhhhhhhhhhh----------HHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhhhhhhhhHHH
Q 048767 240 QREDLREWERKLQDGEERLVKGQRIVNQR----------EEKANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKEDDINK 309 (1041)
Q Consensus 240 QRe~L~EweKkLqe~eerL~~~qr~LNqR----------Ee~~~E~~~~l~~kekeLEe~qkkie~~~~~Lk~keddi~~ 309 (1041)
-+..+..++..+...+..+...+..++.. ..........+...+.++..++..|......+...+.++..
T Consensus 156 ~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 235 (423)
T TIGR01843 156 LEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQ 235 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H-HHhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 048767 310 R-LANLITKEKEYDAARKSLEMKEEELRQLEEKLNA 344 (1041)
Q Consensus 310 r-l~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~a 344 (1041)
. ...+......+......+..-...|..++..|..
T Consensus 236 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 236 IEQTFREEVLEELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 120
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=44.23 E-value=1e+03 Score=32.67 Aligned_cols=84 Identities=25% Similarity=0.322 Sum_probs=57.7
Q ss_pred HhhHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048767 619 LLHDFELQKRKLESDMQNRQEELEKDLKEKERLFEEEKERELSNINYLRDIARKEMEEMKLERLKLEKEKQEVDSHRKHL 698 (1041)
Q Consensus 619 ~l~d~E~qkreLe~~~~~rqEE~E~~L~EREk~FEeek~~EL~~In~lke~a~kE~E~v~lE~~rLekEr~Ei~~~ke~l 698 (1041)
-+++--.++++|+..++.+ +|..+.+..+.+.......|+... ...++-++..|..+++-++..+..+
T Consensus 993 ~l~~~~~~er~l~dnl~~~------~l~~q~~e~~re~~~ld~Qi~~~~------~~~~~ee~~~L~~~~~~l~se~~~~ 1060 (1294)
T KOG0962|consen 993 KIRNQYQRERNLKDNLTLR------NLERKLKELERELSELDKQILEAD------IKSVKEERVKLEEEREKLSSEKNLL 1060 (1294)
T ss_pred HHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHhhhHhhHH
Confidence 3555556666666666543 233444444555555555554443 5567788899999999999999999
Q ss_pred hhhhhhhhhcHHHHHH
Q 048767 699 EGEQVGIRKDIDMLVG 714 (1041)
Q Consensus 699 e~e~~em~kdIeeL~~ 714 (1041)
-++..++..-|.-+..
T Consensus 1061 lg~~ke~e~~i~~~k~ 1076 (1294)
T KOG0962|consen 1061 LGEMKQYESQIKKLKQ 1076 (1294)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988887654
No 121
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=44.20 E-value=4.4e+02 Score=33.73 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhh
Q 048767 145 LEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEVKL 188 (1041)
Q Consensus 145 LEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL 188 (1041)
|+..+...=.+..+|+=.|...|...+.-+..++.+..+.-.++
T Consensus 126 l~~~i~~~id~~g~i~d~aS~~L~~ir~~~~~~~~~i~~~l~~~ 169 (771)
T TIGR01069 126 LENDIIACIDDDGKVKDGASEELDAIRESLKALEEEVVKRLHKI 169 (771)
T ss_pred HHHHHHHHhCCCCEECCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444333334567777777788887777777776666554443
No 122
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=44.07 E-value=3.6e+02 Score=33.28 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHH
Q 048767 332 EEELRQLEEKLNAREKVEVEKL 353 (1041)
Q Consensus 332 EkeLl~leEKL~aRE~~eIQkL 353 (1041)
=..|..+.++|+. ..++|+.|
T Consensus 493 SEHLasmNeqL~~-Q~eeI~~L 513 (518)
T PF10212_consen 493 SEHLASMNEQLAK-QREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHH-HHHHHHHH
Confidence 3455666666654 34666665
No 123
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=43.12 E-value=4.9e+02 Score=28.58 Aligned_cols=172 Identities=19% Similarity=0.297 Sum_probs=101.5
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 443 EKNLETEKKQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKE 522 (1041)
Q Consensus 443 EK~le~ek~~L~~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kE 522 (1041)
-++|..+...|...-+-+....+-|---...+..+..-+.++-+.-+..++|=.+ ||..+-.+=.+...|++.
T Consensus 17 n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEled-------Lk~~~~~lEE~~~~L~aq 89 (193)
T PF14662_consen 17 NQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELED-------LKTLAKSLEEENRSLLAQ 89 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333334444444444444444444444332 333344444566778888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHhHHHHHHhHHHHHHhhH
Q 048767 523 AEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEERIKRDKQLAEDHIKREWEALEVAKESFKATMD 602 (1041)
Q Consensus 523 ae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~erLK~Ek~~~~~~~krelE~L~~ekEsF~~~M~ 602 (1041)
+-.|..+...+.++|+.|-+....|.-+..-+... ...|-.++.+++.++- ..++|-+.|++|.+.--
T Consensus 90 ~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~-----------~~eL~~~~~~Lq~Ql~-~~e~l~~~~da~l~e~t 157 (193)
T PF14662_consen 90 ARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKR-----------SKELATEKATLQRQLC-EFESLICQRDAILSERT 157 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH-----------HHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 88888888888899988877777776666555532 2344456667766652 57999999999998776
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHhhhhhHhHH
Q 048767 603 HEQSMITEKAESERRQLLHDFELQKRKLESDM 634 (1041)
Q Consensus 603 hE~s~~~ek~q~Erad~l~d~E~qkreLe~~~ 634 (1041)
+--..+..-|. |-..+..++-+-+..||.-|
T Consensus 158 ~~i~eL~~~ie-Ey~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 158 QQIEELKKTIE-EYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 65555544333 44456666666677776655
No 124
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=42.88 E-value=3.8e+02 Score=27.31 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=27.1
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 487 QLRISEEERAEYLRLQSELKEQIGKCRLQEEMLL 520 (1041)
Q Consensus 487 ~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~ 520 (1041)
.++.++.|-.+|+.|=..|-.-|.+||.....|=
T Consensus 78 ~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG 111 (136)
T PF04871_consen 78 ARKEAQSELDDLLVLLGDLEEKRKKYKERLKELG 111 (136)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcC
Confidence 3345788899999999999999999988766553
No 125
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=42.87 E-value=6.8e+02 Score=30.75 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 404 IAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQLLADKEDILTEKAELEKIRDANEQQLLKI 481 (1041)
Q Consensus 404 l~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~aeEK~le~ek~~L~~dkeei~~lK~elEK~~a~~e~q~~qi 481 (1041)
+....+.++.++-.+..|-+.+...++.++|-.+.|.... ..-+.+|.+..+.........+.....|++|+..|
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq---~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ---DVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3456677777777788888888888888887777766443 45555555544544444444555555555555544
No 126
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=41.64 E-value=6.1e+02 Score=29.27 Aligned_cols=94 Identities=21% Similarity=0.292 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcHHHHHHHhHHHHHHH
Q 048767 644 DLKEKERLFEEEKERELSNINYLRDIARKEMEEMKLERLKLEKEKQEVDSHRKHLEGEQVGIRKDIDMLVGLTKMLKEQR 723 (1041)
Q Consensus 644 ~L~EREk~FEeek~~EL~~In~lke~a~kE~E~v~lE~~rLekEr~Ei~~~ke~le~e~~em~kdIeeL~~ls~KLk~QR 723 (1041)
..+.|-.+-..+.+.-|..++-....+=.+|.+..-++..|-.||.+...++= .+.+|+
T Consensus 38 ~~~~~~~~~~~~~~~~l~~n~e~q~~lw~~i~el~~~L~~l~~er~~~v~~ri---------------------~~~eqE 96 (289)
T PF05149_consen 38 AQRKRYAAQRKESEKFLQKNEEQQQELWREIQELERELQDLAEERREEVERRI---------------------EMREQE 96 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHH
Confidence 35667778888888999999999999999999999999999888887766543 344555
Q ss_pred HHHHHHHHHHHHHHHhhc-----------ccccchhhhhhhhHhhh
Q 048767 724 EQIVKERDRFLNFVEKQK-----------KCEHCAEITSEFVLSDL 758 (1041)
Q Consensus 724 E~~~~eRe~f~~~vEklK-----------~ckncg~~~~efvLsdL 758 (1041)
+.=..+=+.|+.|..+|+ -|.+||.++.+||..-.
T Consensus 97 ~~R~~~~~~Fl~~~~qh~q~L~~~~~n~~~~~~~~~~~~~~V~~~~ 142 (289)
T PF05149_consen 97 AKRRTAAEEFLQAASQHKQRLRRCEENCDRALSCAESLEEYVQEGC 142 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666655544 45788999888875443
No 127
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=41.38 E-value=5.5e+02 Score=28.71 Aligned_cols=11 Identities=27% Similarity=0.268 Sum_probs=5.0
Q ss_pred HHHHHhHHHHH
Q 048767 139 KQCVLDLEKAL 149 (1041)
Q Consensus 139 KqCVadLEKAL 149 (1041)
-+|.+-+++|+
T Consensus 39 ~e~~~A~~~A~ 49 (297)
T PF02841_consen 39 AENRAAVEKAV 49 (297)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 128
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=40.77 E-value=7.7e+02 Score=30.23 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 048767 502 QSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQ 557 (1041)
Q Consensus 502 qseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~ee 557 (1041)
...|.++|..+..+-..+...+......-..+..+|+.|.++..++.++...|.+.
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~ 405 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEM 405 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888888888888888888888899999999999999888888743
No 129
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=39.92 E-value=5.1e+02 Score=33.20 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 500 RLQSELKEQIGKCRLQEEMLLKEA 523 (1041)
Q Consensus 500 ~LqseLKeEId~~R~Qke~L~kEa 523 (1041)
.+..+..+-|...|.+-+.+.++.
T Consensus 565 ~a~~ea~~~~~~a~~~~~~~i~~l 588 (771)
T TIGR01069 565 ELEKEAQEALKALKKEVESIIREL 588 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555544443
No 130
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=39.39 E-value=8e+02 Score=30.02 Aligned_cols=137 Identities=20% Similarity=0.262 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------HH-HHHHHHHHhhhHHHHhHHHHHHHHHHHHHhH--
Q 048767 521 KEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKI----------SE-QTEKLEKEKLSEEERIKRDKQLAEDHIKREW-- 587 (1041)
Q Consensus 521 kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I----------~e-ere~le~~~~~E~erLK~Ek~~~~~~~krel-- 587 (1041)
+-+.-|.++-.-.-.|.|.+|-|+.-++.|-.++ ++ +-|-+..++..+.--|+.+|..+--.|.++-
T Consensus 50 ~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~keketla~~Ye~eee~ 129 (552)
T KOG2129|consen 50 ARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEKETLATVYEVEEEF 129 (552)
T ss_pred HHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccccccchhhhhhhhh
Confidence 3334444444334445555566666665543221 22 3345566888888899999988887777654
Q ss_pred ---------HHHHHhHHHHHHhhHhhhhHHH----HHHHHHHHHH---hhHHHHh---hhhhHhHHHHHHHHHHHHHHHH
Q 048767 588 ---------EALEVAKESFKATMDHEQSMIT----EKAESERRQL---LHDFELQ---KRKLESDMQNRQEELEKDLKEK 648 (1041)
Q Consensus 588 ---------E~L~~ekEsF~~~M~hE~s~~~----ek~q~Erad~---l~d~E~q---kreLe~~~~~rqEE~E~~L~ER 648 (1041)
..|+.++=.|....++|+--+. .||..--++- ...++-- .-+|||-++..||-+=+.|--|
T Consensus 130 lTn~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKr 209 (552)
T KOG2129|consen 130 LTNPLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKR 209 (552)
T ss_pred ccCchhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4566666677777776663332 2332222221 1222333 3468899999999999999999
Q ss_pred HHHHHHHHH
Q 048767 649 ERLFEEEKE 657 (1041)
Q Consensus 649 Ek~FEeek~ 657 (1041)
.-.++.++.
T Consensus 210 mdkLe~ekr 218 (552)
T KOG2129|consen 210 MDKLEQEKR 218 (552)
T ss_pred HHHHHHHHH
Confidence 988888875
No 131
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=38.86 E-value=1.1e+03 Score=31.32 Aligned_cols=59 Identities=12% Similarity=0.240 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHH---------hHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhh
Q 048767 122 TDVEKREENLRKALGVEKQCVL---------DLEKALREMRSENAEIKFTADSKLAEANALVTSIEEK 180 (1041)
Q Consensus 122 sEaeKREEnLkKALgvEKqCVa---------dLEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeK 180 (1041)
+...-|.+-|.+.+|++.-.-. .....+..++..+..+-..++..++....-+..+...
T Consensus 164 a~~~eR~~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l~~~~~ls~e~~~~l~~~~~~l~~~ 231 (1047)
T PRK10246 164 AKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLTDE 231 (1047)
T ss_pred CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHH
Confidence 3567889999999999986421 1334445555565555555555554444444333333
No 132
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=38.64 E-value=4.7e+02 Score=27.15 Aligned_cols=100 Identities=20% Similarity=0.235 Sum_probs=72.6
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHh
Q 048767 247 WERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKEDDINKRLANLITKEKEYDAARK 326 (1041)
Q Consensus 247 weKkLqe~eerL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~ 326 (1041)
|+++-....+-|-..++--.-=+.||..-.+.|...+..++.+..-.+.++..+-..++.|..=-..|..=+-+++.+.+
T Consensus 1 de~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 1 DEEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred CcHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777776655556677777777777777777777777777777766777766666666666778888888
Q ss_pred hhhhhHHHHHHHHHHHhhhh
Q 048767 327 SLEMKEEELRQLEEKLNARE 346 (1041)
Q Consensus 327 ~Le~KEkeLl~leEKL~aRE 346 (1041)
.-+.-.++|-..++++..=|
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777778877777776543
No 133
>KOG1296 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.28 E-value=12 Score=38.98 Aligned_cols=13 Identities=54% Similarity=0.989 Sum_probs=11.3
Q ss_pred CCCCCchhHHHhH
Q 048767 796 PASAGTISWLRKC 808 (1041)
Q Consensus 796 p~S~g~~SwlrKC 808 (1041)
|+|-|+-|++.||
T Consensus 55 pg~Rgta~~v~KC 67 (161)
T KOG1296|consen 55 PGSRGTASFVMKC 67 (161)
T ss_pred CCCcchhhHhhhh
Confidence 6777888999999
No 134
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=38.02 E-value=6.2e+02 Score=29.67 Aligned_cols=155 Identities=25% Similarity=0.339 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhHhhHHhhhhhhhH---HHHHHhhchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 048767 347 KVEVEKLLDEHKASLDAKQREFDL---EIDQKRKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEK 423 (1041)
Q Consensus 347 ~~eIQkLldeh~a~L~~Kk~eFEl---ElE~kRKs~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEk 423 (1041)
+-|+..+|---++.|.+--.+.-+ .|.+.++.++.-+.+--.-+.+-=.+|..-=+||+-||.-|+-++.-|-.+=+
T Consensus 204 ~lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr 283 (384)
T KOG0972|consen 204 KLEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFR 283 (384)
T ss_pred HHHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777766666555 45566777777766666777888889999899999999999999999999999
Q ss_pred hHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhcccHHHH------
Q 048767 424 DVESKLKDLNGREKTMKSEEKNLETEKKQLLADKEDILTEKAELEKIRDANEQ--QLLKIYEEKNQLRISEEER------ 495 (1041)
Q Consensus 424 dl~~K~k~LkEkEksL~aeEK~le~ek~~L~~dkeei~~lK~elEK~~a~~e~--q~~qi~ee~e~LkiteeER------ 495 (1041)
.+..-++.++++-+.+.-- .+.....|..=-.+|..+|.++|.-.+.+.+ =+.+|.++.-+|+ +|+
T Consensus 284 ~a~~~lse~~e~y~q~~~g---v~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk---~et~~mnv~ 357 (384)
T KOG0972|consen 284 RATDTLSELREKYKQASVG---VSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLK---EETQTMNVQ 357 (384)
T ss_pred HHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHH---HHHHhhhhh
Confidence 9999999999887766533 2444455555556666777776655544433 2456666555543 444
Q ss_pred ---HHHHHHHHHHHH
Q 048767 496 ---AEYLRLQSELKE 507 (1041)
Q Consensus 496 ---~E~l~LqseLKe 507 (1041)
.+|..||+.|+.
T Consensus 358 igv~ehs~lq~~l~~ 372 (384)
T KOG0972|consen 358 IGVFEHSILQTYLRD 372 (384)
T ss_pred eehhhHHHHHHHHHH
Confidence 367788888876
No 135
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=37.96 E-value=6.3e+02 Score=28.41 Aligned_cols=111 Identities=14% Similarity=0.238 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHhHHHHHHHHHHHHH
Q 048767 507 EQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISE-QTEKLEKEKLSEEERIKRDKQLAEDHIKR 585 (1041)
Q Consensus 507 eEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~e-ere~le~~~~~E~erLK~Ek~~~~~~~kr 585 (1041)
+||+++-.|-.++.+....+.+....||++=+.|--+-++-++...+.+. .+..|-..++.+-++++.+ +....+.+
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~td--e~k~~~~~ 120 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTD--ELKNIAQN 120 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHH
Confidence 58999999999999999999999999999998888887777777776654 3455777777777777555 55556666
Q ss_pred hHHHHHHhHHHHHHhhHhhhhHHHHHHHHHHHHHhhHH
Q 048767 586 EWEALEVAKESFKATMDHEQSMITEKAESERRQLLHDF 623 (1041)
Q Consensus 586 elE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~ 623 (1041)
+.-.++ .+-..|-+|.-.--++-++--..|..+|
T Consensus 121 ei~k~r----~e~~~ml~evK~~~E~y~k~~k~~~~gi 154 (230)
T PF03904_consen 121 EIKKVR----EENKSMLQEVKQSHEKYQKRQKSMYKGI 154 (230)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 655554 4555565555555555555555555444
No 136
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=37.88 E-value=9.8e+02 Score=30.61 Aligned_cols=88 Identities=22% Similarity=0.376 Sum_probs=50.3
Q ss_pred HHHHHHhHHHhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhh----hhHH--HHHHHHHHhHh
Q 048767 286 LEEAQEKIDATNLSLMRKEDDINKRLANLITKEKEYDAARKSLEMKEEELRQLEEKLNA----REKV--EVEKLLDEHKA 359 (1041)
Q Consensus 286 LEe~qkkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~a----RE~~--eIQkLldeh~a 359 (1041)
||..=++|.......+..|.++...|..|+.-|. ..+..|.-.-++--.||-||.. |+++ -|+.| .-.=+
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er---~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~L-EkrL~ 498 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNER---SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQL-EKRLA 498 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 5544556777777778888999999988888776 3445555544444455555543 3322 22221 11112
Q ss_pred hHHhhhhhhhHHHHHHhh
Q 048767 360 SLDAKQREFDLEIDQKRK 377 (1041)
Q Consensus 360 ~L~~Kk~eFElElE~kRK 377 (1041)
.....+..+|.+|...||
T Consensus 499 eE~~~R~~lEkQL~eErk 516 (697)
T PF09726_consen 499 EERRQRASLEKQLQEERK 516 (697)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 223345667777766665
No 137
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.23 E-value=4.9e+02 Score=27.77 Aligned_cols=42 Identities=31% Similarity=0.314 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Q 048767 457 KEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYL 499 (1041)
Q Consensus 457 keei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l 499 (1041)
+..+..++.+++.+...+..-...|..+...-..+ ++|..++
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l 109 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELL 109 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHH
Confidence 34444555555555555555555555554444444 4555444
No 138
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=37.17 E-value=3.4e+02 Score=28.53 Aligned_cols=76 Identities=24% Similarity=0.311 Sum_probs=21.2
Q ss_pred hhhhhhhHHHhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhhhhhhhh
Q 048767 231 EAYEGTFSQQREDLREWERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKEDD 306 (1041)
Q Consensus 231 ea~E~~i~~QRe~L~EweKkLqe~eerL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~~~~~Lk~kedd 306 (1041)
.+.+..+...|++|.+-.|.--+...+|...-.-|...+..+.+....+...+.++..++.+|..-...|+++...
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~ 145 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKA 145 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777888888888888888888888888887877777777777777777777777776666666666555544
No 139
>PF14992 TMCO5: TMCO5 family
Probab=37.14 E-value=7.1e+02 Score=28.73 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=35.2
Q ss_pred hhHHHHHHhhchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Q 048767 368 FDLEIDQKRKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDL 432 (1041)
Q Consensus 368 FElElE~kRKs~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~L 432 (1041)
++-|+....-.+++. +-.-.-.+.+|.++...|..-++-|..=+-.+..+.+..+.++.+...+
T Consensus 37 Le~Eit~~~~~~~~~-e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~ 100 (280)
T PF14992_consen 37 LEREITKMDHIADRS-EEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNV 100 (280)
T ss_pred HHHHHHHHccccCch-hHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCC
Confidence 344554444444433 1122223667777777766555555444444445577777777766664
No 140
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.04 E-value=5.9e+02 Score=27.77 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 048767 502 QSELKEQIGKCRLQEEMLLKEAEDLKQQK-------ENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEE 569 (1041)
Q Consensus 502 qseLKeEId~~R~Qke~L~kEae~Lk~eK-------ekFE~EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~ 569 (1041)
..+.-+.|+.+-.++..|..+.+.|..|. ...++-=..+....+.|+.....|..-+..+.-++..-.
T Consensus 37 ~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~ 111 (251)
T PF11932_consen 37 AQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMI 111 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443 333343444444444444444444444444444443333
No 141
>PLN03188 kinesin-12 family protein; Provisional
Probab=36.30 E-value=1e+03 Score=32.67 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhhHHHHHhHHHHHH
Q 048767 125 EKREENLRKALGVEKQCVLDLEKALR 150 (1041)
Q Consensus 125 eKREEnLkKALgvEKqCVadLEKAL~ 150 (1041)
+-+-|.|+--|..||.|...|.-||+
T Consensus 1078 r~l~Ekl~~EL~~eK~c~eel~~a~q 1103 (1320)
T PLN03188 1078 RALAEKQKHELDTEKRCAEELKEAMQ 1103 (1320)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34567899999999999999999996
No 142
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.23 E-value=3.3e+02 Score=27.87 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 048767 458 EDILTEKAELEKIRDA 473 (1041)
Q Consensus 458 eei~~lK~elEK~~a~ 473 (1041)
+++..|..+|..++..
T Consensus 72 eel~~ld~ei~~L~~e 87 (169)
T PF07106_consen 72 EELAELDAEIKELREE 87 (169)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3344444444433333
No 143
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=35.99 E-value=3e+02 Score=30.52 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHH
Q 048767 520 LKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEERIKRDKQLAEDHIKR 585 (1041)
Q Consensus 520 ~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~erLK~Ek~~~~~~~kr 585 (1041)
.++.+.|+.+-++=..+-+-.+.+...|.|..+.+. +|.|||..+-..+++++..
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~-----------~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ-----------DEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHHHhc
Confidence 344445555555555666667777777777777776 8999999999999998864
No 144
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=35.77 E-value=12 Score=46.10 Aligned_cols=78 Identities=22% Similarity=0.286 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 048767 398 NHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQLLADKEDILTEKAELEKIRDANEQ 476 (1041)
Q Consensus 398 ~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~aeEK~le~ek~~L~~dkeei~~lK~elEK~~a~~e~ 476 (1041)
.|.=+++.+.|..+++=-.+|.+. .+|..+++.|.+.=..+.----.||.+....-.-+..+..|+..|..+...+.+
T Consensus 304 R~~a~r~~klE~~ve~YKkKLed~-~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~ 381 (713)
T PF05622_consen 304 REKADRADKLENEVEKYKKKLEDL-EDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSE 381 (713)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544444443 245555555555443333222233333333333334444444444444333333
No 145
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=35.68 E-value=5.6e+02 Score=32.30 Aligned_cols=41 Identities=27% Similarity=0.356 Sum_probs=22.1
Q ss_pred hcchhhhHHHHHHHHHHhhhhHHH----Hhhhhc----hhhHHHHhhhc
Q 048767 161 FTADSKLAEANALVTSIEEKSLEV----EVKLRS----VDAKVAEINRK 201 (1041)
Q Consensus 161 ~tsesKLaEA~aLv~~~eeKslEv----E~KL~a----AeaklAEa~Rk 201 (1041)
+-.|.||++-.-|.+++.--.-++ |.--|| |+++||-+-|-
T Consensus 248 vgpDrklaeeedlfdSahpeegDlDlasestAhaqsskadsllavvKRe 296 (940)
T KOG4661|consen 248 VGPDRKLAEEEDLFDSAHPEEGDLDLASESTAHAQSSKADSLLAVVKRE 296 (940)
T ss_pred cCcccchhhccccccccCCcccccccccccchhcccccchhhhhhhhcC
Confidence 334667777766666664333222 222333 56666666554
No 146
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=35.65 E-value=7.3e+02 Score=31.89 Aligned_cols=60 Identities=30% Similarity=0.333 Sum_probs=35.3
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHhHhhHHhhhhhhhHHHHHHh
Q 048767 317 KEKEYDAARKSLEMKEEELRQLEEKLNAREKVEVEKLLDEHKASLDAKQREFDLEIDQKR 376 (1041)
Q Consensus 317 kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kR 376 (1041)
+..++......++....+|....++|..+....++++..+.+.+|..-+.+.+.=+...|
T Consensus 535 ~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 535 KAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555566666666666666677777777766666666655554443333
No 147
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=35.60 E-value=1.1e+03 Score=30.61 Aligned_cols=89 Identities=22% Similarity=0.361 Sum_probs=58.9
Q ss_pred hhhhhhhhhh---hhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHhhhhhhH
Q 048767 256 ERLVKGQRIV---NQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKEDDINKRLANLITKEKEYDAARKSLEMKE 332 (1041)
Q Consensus 256 erL~~~qr~L---NqREe~~~E~~~~l~~kekeLEe~qkkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KE 332 (1041)
.+|-+.+-+| ..||.++.|.+..+.+...-||.-.+.++.--.. .+.+|..|...++.+|.-+-..+..+-..|
T Consensus 481 k~~~~a~gvldaaaarErrAsE~eas~r~R~~ALEara~ALeERAr~---~e~~L~~Re~a~a~Re~TLAahEaa~AE~E 557 (828)
T PF04094_consen 481 KRVDDARGVLDAAAARERRASEAEASLRAREEALEARAKALEERARA---AERSLEERERAAAQREATLAAHEAAAAEEE 557 (828)
T ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4566677777 5799999999999999999999888877654322 234555555555555555555555555555
Q ss_pred HHHHHHHHHHhhhhH
Q 048767 333 EELRQLEEKLNAREK 347 (1041)
Q Consensus 333 keLl~leEKL~aRE~ 347 (1041)
..|...++-++.|++
T Consensus 558 ~aLRLREeA~aER~~ 572 (828)
T PF04094_consen 558 SALRLREEALAERDR 572 (828)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666555554
No 148
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.33 E-value=1.3e+03 Score=31.46 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=92.2
Q ss_pred HhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhHHHH----HHHHHhHHHHHHhhhhhhhHHHhhhHHHHHHHhh
Q 048767 177 IEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRESA----LRMERASFIAEREAYEGTFSQQREDLREWERKLQ 252 (1041)
Q Consensus 177 ~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~----LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLq 252 (1041)
+++..-.+..+...++.....+++......-...+++-.... |-....+|.-+-++.-+.+.+-...|-.|.+.+.
T Consensus 417 leke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n 496 (1293)
T KOG0996|consen 417 LEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVN 496 (1293)
T ss_pred HHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333333444445555555555555554444444444444333 4445677777777777888888888888888887
Q ss_pred hhhhhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHhhhhhhH
Q 048767 253 DGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKEDDINKRLANLITKEKEYDAARKSLEMKE 332 (1041)
Q Consensus 253 e~eerL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KE 332 (1041)
+....+--.+.-|.-=..+.+. -.+.+++++++|......+.+..+.|+.-...|.....++......|...=
T Consensus 497 ~~~~e~~vaesel~~L~~~~~~-------~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~ 569 (1293)
T KOG0996|consen 497 EARSELDVAESELDILLSRHET-------GLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLR 569 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH
Confidence 7666655554333222222111 456788889999888888888887777766666666555555555555533
Q ss_pred HHHH
Q 048767 333 EELR 336 (1041)
Q Consensus 333 keLl 336 (1041)
++..
T Consensus 570 ~e~~ 573 (1293)
T KOG0996|consen 570 KEER 573 (1293)
T ss_pred HHHH
Confidence 3333
No 149
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=34.26 E-value=4.3e+02 Score=35.15 Aligned_cols=89 Identities=19% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 048767 476 QQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKIS 555 (1041)
Q Consensus 476 ~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~ 555 (1041)
+.+.+...++..++--..|+....+++.+.++.++.=|.+. .++-+.++++.|+|+ .-|+.+++|. ...
T Consensus 438 ~r~e~e~~er~~~er~~~E~er~er~e~e~~er~Erer~er------~erer~Erer~erEr----~erer~erer-~~r 506 (1021)
T PTZ00266 438 ARIEKENAHRKALEMKILEKKRIERLEREERERLERERMER------IERERLERERLERER----LERDRLERDR-LDR 506 (1021)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH----HHHHHHHHHH-HHH
Q ss_pred HHHHHHHHHhhhHHHHhHHHHHH
Q 048767 556 EQTEKLEKEKLSEEERIKRDKQL 578 (1041)
Q Consensus 556 eere~le~~~~~E~erLK~Ek~~ 578 (1041)
.|||.++++ |++++..++.+
T Consensus 507 ~e~er~~r~---e~e~~e~~rr~ 526 (1021)
T PTZ00266 507 LERERVDRL---ERDRLEKARRN 526 (1021)
T ss_pred HHHHHHHHH---HHHHHHHHHhh
No 150
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=33.53 E-value=6.1e+02 Score=27.03 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=21.7
Q ss_pred cCCcccccccCCCCCCCCCCcc-------ccHHHHHHHHHHHHHHHhhhhhc
Q 048767 37 GKGKSIVAFTEPRTPQNGVGLA-------DDVESLAEKVSKLENELFEYQYN 81 (1041)
Q Consensus 37 ~kGk~~~af~~~~~p~~~~~~~-------~D~~aLia~iskLE~ElydYQyn 81 (1041)
+|+| +.=+++|||++...+. -=+..+.+--+.|=.|+.-++|.
T Consensus 8 AKSK--~~rv~~~p~~~~~E~~el~~~~~~Yr~~m~alR~~f~ee~~~~~~~ 57 (170)
T PF14943_consen 8 AKSK--MFRVPEPPPVDPEEVKELKRRYNNYRTQMRALRSEFREEVLRKKYE 57 (170)
T ss_pred cccc--ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555 4557777887665442 01113333333444566666664
No 151
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=33.39 E-value=8.7e+02 Score=28.66 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=21.0
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcc
Q 048767 164 DSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKS 202 (1041)
Q Consensus 164 esKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~ 202 (1041)
+.+-..+.+...-++....+++.+|..|+..+..--+++
T Consensus 153 ~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 153 GSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444444555555555566666666666665554333
No 152
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.38 E-value=6.4e+02 Score=27.11 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=18.3
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhh
Q 048767 391 EKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREK 437 (1041)
Q Consensus 391 e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEk 437 (1041)
.+...++.+....+..-.+.++.....+..+...+...-..|..+..
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444333333333333333333333333
No 153
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=33.20 E-value=96 Score=33.80 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=29.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 048767 655 EKERELSNINYLRDIARKEMEEMKLERLKLEKEKQEVDSHRKHLEGE 701 (1041)
Q Consensus 655 ek~~EL~~In~lke~a~kE~E~v~lE~~rLekEr~Ei~~~ke~le~e 701 (1041)
+-.+++..+-+.-..+.++|.++..|.+.|+.||+.+..+|+....+
T Consensus 35 ~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~ 81 (228)
T PRK06800 35 EIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEH 81 (228)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555566667777777777777777777776666655433
No 154
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=32.53 E-value=50 Score=43.75 Aligned_cols=21 Identities=5% Similarity=0.101 Sum_probs=16.0
Q ss_pred HHHHHhHHHHHHHHHhhhhhh
Q 048767 139 KQCVLDLEKALREMRSENAEI 159 (1041)
Q Consensus 139 KqCVadLEKAL~emr~E~AEi 159 (1041)
-.|+|....-+..+|+-+.-.
T Consensus 339 ~~e~a~fc~~vkklr~r~~~~ 359 (1639)
T KOG0905|consen 339 NEELAAFCHMVKKLRKRYPIR 359 (1639)
T ss_pred chhHHHHHHHHHHHHhcCccc
Confidence 578888888888888766433
No 155
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=32.47 E-value=1e+03 Score=29.08 Aligned_cols=146 Identities=18% Similarity=0.277 Sum_probs=84.3
Q ss_pred HHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHh-hhhch-hhHHHHhhhcchHHhhhhhhhhhHHHHH-----
Q 048767 147 KALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEV-KLRSV-DAKVAEINRKSSEIERKSHELESRESAL----- 219 (1041)
Q Consensus 147 KAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~-KL~aA-eaklAEa~Rk~s~aeRKL~eVEaRE~~L----- 219 (1041)
..|+.||.+.|-++-++.+-.++-..-|.++-.|...+=. =+-++ +|--|=++.-++.+......+-++=|+|
T Consensus 155 ~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE 234 (426)
T smart00806 155 AELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIE 234 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888877777777777777777777665522 01110 1111222222222222222222222222
Q ss_pred --H------------HHHhHHHHHHhhhhhhhHHHhhhHH----HHHHHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHHH
Q 048767 220 --R------------MERASFIAEREAYEGTFSQQREDLR----EWERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQ 281 (1041)
Q Consensus 220 --r------------RerlSf~~Erea~E~~i~~QRe~L~----EweKkLqe~eerL~~~qr~LNqREe~~~E~~~~l~~ 281 (1041)
| ++.-+...|..+..+.+.+-.+.+. -|.|.-...=+.+|+.|.-||.-|+-+..
T Consensus 235 ~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~D------- 307 (426)
T smart00806 235 ALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIAD------- 307 (426)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 2 2334455566666666666555555 46666666667999999999999996655
Q ss_pred hHHhHHHHHHhHHHhhhh
Q 048767 282 KEKDLEEAQEKIDATNLS 299 (1041)
Q Consensus 282 kekeLEe~qkkie~~~~~ 299 (1041)
.+.+|+.+......-...
T Consensus 308 L~dDL~ka~eTf~lVeq~ 325 (426)
T smart00806 308 LKEDLEKAEETFDLVEQC 325 (426)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777665555444333
No 156
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=31.95 E-value=1.1e+03 Score=29.34 Aligned_cols=54 Identities=22% Similarity=0.315 Sum_probs=23.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHhHhhHHhhhhhhhHHHHHHhhchH
Q 048767 322 DAARKSLEMKEEELRQLEEKLNAREKVEVEKLLDEHKASLDAKQREFDLEIDQKRKAFD 380 (1041)
Q Consensus 322 ~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~d 380 (1041)
..++..++.-+..+..++..+..- . .-+.+....|..++...+.++...++.+-
T Consensus 233 ~~l~~ele~a~~~l~~l~~~~~~~-G----G~~~~~r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 233 AHLRNELEEAQRSLESLEKKFRSE-G----GDLFEEREQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-c----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444331 1 11222344555555555555555555443
No 157
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.89 E-value=1.1e+03 Score=29.61 Aligned_cols=60 Identities=32% Similarity=0.458 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 504 ELKEQIGKCRLQEEMLLKEAEDLKQQKEN--F-EKEWEQLDEKRAEVEKELKKISEQTEKLEK 563 (1041)
Q Consensus 504 eLKeEId~~R~Qke~L~kEae~Lk~eKek--F-E~EWE~LDEKR~el~KE~~~I~eere~le~ 563 (1041)
.|+.||+..=.+-+.|.++.|+||.+.++ | -.+.+.+--=|.+|.+++.+|.-++..+.+
T Consensus 298 ~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 298 MLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555544322 1 123333333444455555555544444433
No 158
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=31.49 E-value=9.8e+02 Score=28.70 Aligned_cols=28 Identities=36% Similarity=0.378 Sum_probs=14.4
Q ss_pred HHHHHHHHHH-HhhhhhHHHHHhhhhhhh
Q 048767 409 MALEKRLEKC-KDKEKDVESKLKDLNGRE 436 (1041)
Q Consensus 409 qaLe~k~~~l-keKEkdl~~K~k~LkEkE 436 (1041)
.|++++.++| ++.|.|-+.+...-++=+
T Consensus 110 aAaE~khrKli~dLE~dRe~haqdaaeGD 138 (561)
T KOG1103|consen 110 AAAEKKHRKLIKDLEADREAHAQDAAEGD 138 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4555555553 455555555555544443
No 159
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=31.37 E-value=3.2e+02 Score=26.25 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=27.9
Q ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 481 IYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENF 533 (1041)
Q Consensus 481 i~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekF 533 (1041)
|.++.+-+...+=|=.|+----..|.++++.+++....|..|.+.||++...|
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344555666666666666666666666666554
No 160
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=30.93 E-value=9.2e+02 Score=28.23 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=35.8
Q ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 048767 708 DIDMLVGLTKMLKEQREQIVKERDRFLNFVEKQKKCEHC 746 (1041)
Q Consensus 708 dIeeL~~ls~KLk~QRE~~~~eRe~f~~~vEklK~cknc 746 (1041)
|||.|-+=.+-|+.+=.++..|++=...-|-+||+-=.|
T Consensus 190 DIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 190 DIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999875554
No 161
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.62 E-value=5.9e+02 Score=28.79 Aligned_cols=69 Identities=20% Similarity=0.295 Sum_probs=42.7
Q ss_pred hHHHHHHhHHhHHHHHHhHHHhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 048767 275 KEKIFKQKEKDLEEAQEKIDATNLSLMRKEDDINKRLANLITKEKEYDAARKSLEMKEEELRQLEEKLN 343 (1041)
Q Consensus 275 ~~~~l~~kekeLEe~qkkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~ 343 (1041)
..+-+.++.++++.+.+.+..+...+++.-.=+..+-+....=|.++-.+++.|+.-+..+..+.+++.
T Consensus 49 far~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 49 FARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555666677766666655555554444444444455555566777777777777777777777665
No 162
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=30.45 E-value=7.9e+02 Score=27.28 Aligned_cols=155 Identities=24% Similarity=0.314 Sum_probs=90.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHhhhhhhhhc-chhhhHHH
Q 048767 92 WSSKYEELKQTFAEAKDALKREQAAHLIAITDVEKREENLRKALGVEKQCVLDLEKALREMRSENAEIKFT-ADSKLAEA 170 (1041)
Q Consensus 92 wtSk~eel~qa~~ea~~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AEiK~t-sesKLaEA 170 (1041)
|.-|.++|++||+.-+.++ +|||. .|+.--+.||+-|..||.--..-..+ +.+.--.|
T Consensus 1 Yvekv~~LQ~AL~~LQaa~--------------ekRE~-------lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~ 59 (205)
T PF12240_consen 1 YVEKVERLQQALAQLQAAC--------------EKREQ-------LERRLRTRLERELESLRAQQRQGNSSGSSSPSNNA 59 (205)
T ss_pred ChhHHHHHHHHHHHHHHHH--------------HHHHH-------HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcH
Confidence 3567899999999887632 34443 35556678999999998876554321 11111345
Q ss_pred HHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhHHHH--------HHHHH-hHHHHHHhhhhhhhHHHh
Q 048767 171 NALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRESA--------LRMER-ASFIAEREAYEGTFSQQR 241 (1041)
Q Consensus 171 ~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~--------LrRer-lSf~~Erea~E~~i~~QR 241 (1041)
..|... +-|-|.++.+.+|-.+--..++ |.+.--|+-+ -.|.. +.-.+.+..+..-| +.-
T Consensus 60 ~~L~~~----LrEkEErILaLEad~~kWEqkY------LEEs~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~-r~~ 128 (205)
T PF12240_consen 60 SNLKEL----LREKEERILALEADMTKWEQKY------LEESAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSL-REE 128 (205)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccc-cch
Confidence 555554 4455778887776666555443 2222222222 22344 33345555554444 455
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHHHhHHh
Q 048767 242 EDLREWERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKD 285 (1041)
Q Consensus 242 e~L~EweKkLqe~eerL~~~qr~LNqREe~~~E~~~~l~~keke 285 (1041)
++|---.++.++.|.||-.+- -.|.|.|.+++..++.
T Consensus 129 eel~~a~~K~qemE~RIK~Lh-------aqI~EKDAmIkVLQqr 165 (205)
T PF12240_consen 129 EELHMANRKCQEMENRIKALH-------AQIAEKDAMIKVLQQR 165 (205)
T ss_pred HHHHHhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Confidence 666666777788888765543 4556666677666554
No 163
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=30.40 E-value=7.1e+02 Score=26.75 Aligned_cols=40 Identities=15% Similarity=0.339 Sum_probs=15.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhh
Q 048767 394 EAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLN 433 (1041)
Q Consensus 394 Evel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~Lk 433 (1041)
+..+......+......++...+.+.+....+..+-..|.
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444444433
No 164
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=30.29 E-value=7.8e+02 Score=27.17 Aligned_cols=104 Identities=19% Similarity=0.275 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------HHHHHHHHHHHHHHHHhhhHHHHhHHHH
Q 048767 505 LKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVE--------KELKKISEQTEKLEKEKLSEEERIKRDK 576 (1041)
Q Consensus 505 LKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~--------KE~~~I~eere~le~~~~~E~erLK~Ek 576 (1041)
+...++++..++....+.++ .=|.+|+..+-.++.=+..++ +|+..+. .=-++.+..-
T Consensus 105 ~e~~~ek~~K~~~~~~k~~~---ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~K~~-----------~Kl~K~~~~~ 170 (240)
T cd07672 105 IELIMDAIHKQRAMQFKKTM---ESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQEKLF-----------AKLAQSKQNA 170 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHH-----------HHHHHHHHHH
Confidence 35567777767766666555 456678877765444333222 2222221 2235566677
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHHhhHhhhhHHHHHHHHHHHHHhhHH
Q 048767 577 QLAEDHIKREWEALEVAKESFKATMDHEQSMITEKAESERRQLLHDF 623 (1041)
Q Consensus 577 ~~~~~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~ 623 (1041)
...++.|+.-+..|..-+..|+..|. .--..|..+.-||-+|+++.
T Consensus 171 ~k~~~~Y~~~v~~l~~~~~~w~~~~~-~~c~~fq~lEeeRi~f~k~~ 216 (240)
T cd07672 171 EDADRLYMQNISVLDKIREDWQKEHV-KACEFFEKQECERINFFRNA 216 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999 55556667788899888764
No 165
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.53 E-value=4.3e+02 Score=30.95 Aligned_cols=52 Identities=25% Similarity=0.403 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHhhHHHHHHHHH
Q 048767 411 LEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQLLADKEDILTEKA 465 (1041)
Q Consensus 411 Le~k~~~lkeKEkdl~~K~k~LkEkEksL~aeEK~le~ek~~L~~dkeei~~lK~ 465 (1041)
+..+-..|++.|++|-+|+.-||.-- .-+.++|+..+.+|..|.-.+..-|+
T Consensus 350 vkekE~elke~Ekel~~kf~~lkr~h---~eEk~kle~~rr~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 350 VKEKEAELKEAEKELHEKFDRLKRLH---QEEKKKLEEKRKQLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777778888777776432 23445677777777777666655444
No 166
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=29.45 E-value=4.6e+02 Score=24.22 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=21.2
Q ss_pred HHHhhHhhhhHHHHHHHHHHHHHhhHHHHhhhhhHhHHHHHHHHHHHH
Q 048767 597 FKATMDHEQSMITEKAESERRQLLHDFELQKRKLESDMQNRQEELEKD 644 (1041)
Q Consensus 597 F~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLe~~~~~rqEE~E~~ 644 (1041)
+.+.+..+=..+...+...+..|+..|+-........|......++..
T Consensus 40 ~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~ 87 (127)
T smart00502 40 VEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQK 87 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444455555555444444444444444444443
No 167
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=29.33 E-value=4e+02 Score=32.97 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 458 EDILTEKAELEKIRDANEQQLLKIY 482 (1041)
Q Consensus 458 eei~~lK~elEK~~a~~e~q~~qi~ 482 (1041)
.+|...+.++.+++.++.+-+.+|.
T Consensus 212 ~~i~~~~~e~d~lk~e~~~~~~~i~ 236 (555)
T TIGR03545 212 LELQKIKEEFDKLKKEGKADKQKIK 236 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544
No 168
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=28.40 E-value=7.2e+02 Score=26.19 Aligned_cols=78 Identities=21% Similarity=0.372 Sum_probs=39.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhhhhHHhhhHHH-HHHHHhhHHHHHHHHHHHHHHHHH
Q 048767 396 EINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETE-KKQLLADKEDILTEKAELEKIRDA 473 (1041)
Q Consensus 396 el~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkEksL~aeEK~le~e-k~~L~~dkeei~~lK~elEK~~a~ 473 (1041)
.+...|+..-...++|..+...|.+--+-|..+++.+...-..|...+-+|-.+ ...-..+++-|.+++.-+++.+..
T Consensus 79 ~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k~~ 157 (158)
T PF09744_consen 79 ELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQKDE 157 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444455555555555555555555555554444333333222222211 222245666777888888877654
No 169
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=28.00 E-value=1.2e+03 Score=28.80 Aligned_cols=42 Identities=26% Similarity=0.330 Sum_probs=35.6
Q ss_pred hhhhhhhhHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 048767 434 GREKTMKSEEKNLETEKKQLLADKEDILTEKAELEKIRDANE 475 (1041)
Q Consensus 434 EkEksL~aeEK~le~ek~~L~~dkeei~~lK~elEK~~a~~e 475 (1041)
+-+++|+....-|..-+++|+.-+.+-..|.+++.|+++..-
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv 428 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYV 428 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHH
Confidence 346778888888888899999999999999999999998754
No 170
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=27.65 E-value=1.8e+02 Score=26.78 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhHhhhhhhhh
Q 048767 696 KHLEGEQVGIRKDIDMLVGLTKMLKEQREQIVKERDRFLNFVEKQKKCEHCAEITSEFVLSDLVQEIV 763 (1041)
Q Consensus 696 e~le~e~~em~kdIeeL~~ls~KLk~QRE~~~~eRe~f~~~vEklK~ckncg~~~~efvLsdLq~d~e 763 (1041)
..|+.+.+.++.+.|.|.....+...--..+..||+.|+.++-- .|..|..+.++ +..|+.+++
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~--a~~e~~~Lk~E--~e~L~~el~ 64 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD--AYEENNKLKEE--NEALRKELE 64 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH--HHHHHHHHH
No 171
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=27.34 E-value=1.1e+03 Score=27.77 Aligned_cols=151 Identities=25% Similarity=0.311 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----HHHHHHHHHhhhHHHHhHHHHH
Q 048767 503 SELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKIS-----EQTEKLEKEKLSEEERIKRDKQ 577 (1041)
Q Consensus 503 seLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~-----eere~le~~~~~E~erLK~Ek~ 577 (1041)
..|=+-+-.+|.+-.-|..|.+.|++...--..+--+|-++-+..+-....+. .+|+.+=..+ +.++..-
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qL----Ek~~~q~- 142 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQL----EKLREQI- 142 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHH----HHHHHHH-
Confidence 33444445555555555555555555554444444455444443332222111 3333333222 2222221
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHhhHhhhhHHHHHH---HHHHHHHhhHHHHhhhhhHh-HHHHHHHHHHHHHHHHHHHHH
Q 048767 578 LAEDHIKREWEALEVAKESFKATMDHEQSMITEKA---ESERRQLLHDFELQKRKLES-DMQNRQEELEKDLKEKERLFE 653 (1041)
Q Consensus 578 ~~~~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~---q~Erad~l~d~E~qkreLe~-~~~~rqEE~E~~L~EREk~FE 653 (1041)
.++.+++-++--++++++ -||+..-.|+ ..|-+.+|.+=+..--+++. .|+| +||++|-+..+
T Consensus 143 ---~qLe~d~qs~lDEkeEl~----~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~EN------RyL~erl~q~q 209 (319)
T PF09789_consen 143 ---EQLERDLQSLLDEKEELV----TERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMEN------RYLKERLKQLQ 209 (319)
T ss_pred ---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH------HHHHHHHHHHH
Confidence 233444444444444432 2444444433 34445555443332222222 1233 69999999999
Q ss_pred HHHHHHhhhhHHHHHHHH
Q 048767 654 EEKERELSNINYLRDIAR 671 (1041)
Q Consensus 654 eek~~EL~~In~lke~a~ 671 (1041)
+|+.--..+||-.|.++.
T Consensus 210 eE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 210 EEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998887765
No 172
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.09 E-value=8.3e+02 Score=26.47 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHhhHhhhhHHHHHHHHHHHHHhhHH
Q 048767 575 DKQLAEDHIKREWEALEVAKESFKATMDHEQSMITEKAESERRQLLHDF 623 (1041)
Q Consensus 575 Ek~~~~~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~ 623 (1041)
.-...++.|+.-++.|..-+..|+..|.. =-..|..+..+|-+|++++
T Consensus 168 ~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~-~~~~~Q~lEe~Ri~~lk~~ 215 (239)
T cd07647 168 SAEEADSAYKSSIGCLEDARVEWESEHAT-ACQVFQNMEEERIKFLRNA 215 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34557889999999999999999999985 3444566667777777664
No 173
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.71 E-value=9.4e+02 Score=26.96 Aligned_cols=71 Identities=24% Similarity=0.318 Sum_probs=56.5
Q ss_pred hHHHhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhhhhhhhhHHHHHHhh
Q 048767 237 FSQQREDLREWERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKEDDINKRLANL 314 (1041)
Q Consensus 237 i~~QRe~L~EweKkLqe~eerL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~~~~~Lk~keddi~~rl~~L 314 (1041)
..-||.-|-.=-..|...-+||.+++|+.+.=|. +=...=.+|-.-...|+.++..|.+-.+++..-...|
T Consensus 116 ~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETEq-------IG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL 186 (220)
T KOG1666|consen 116 SADQRARLLQNTERLERSTDRLKDSQRIALETEQ-------IGSEILEDLHGQREQLERARERLRETDANLGKSRKIL 186 (220)
T ss_pred chhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHH
Confidence 6789999999999999999999999998765544 4444556777778889999999999888877654433
No 174
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=26.51 E-value=22 Score=44.00 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=0.0
Q ss_pred hhhcchhheeeccchhhhHHHHHH
Q 048767 78 YQYNMGLLLIEKKEWSSKYEELKQ 101 (1041)
Q Consensus 78 YQynMGLLLiEkKEwtSk~eel~q 101 (1041)
+..+++-++-|+-.+...+.++..
T Consensus 177 ~~~~l~~~~~e~d~l~q~~~el~~ 200 (713)
T PF05622_consen 177 MYEELSRLVAERDELAQRCHELEK 200 (713)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666555543
No 175
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=26.34 E-value=5.9e+02 Score=24.52 Aligned_cols=58 Identities=24% Similarity=0.483 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 048767 498 YLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTE 559 (1041)
Q Consensus 498 ~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere 559 (1041)
|..|+++.++=||.+ ..|.-|+++||.+......|=..+-.-|..|..+...+..++-
T Consensus 6 leqLE~KIqqAvdtI----~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 6 FEKLEAKVQQAIDTI----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 456788888888876 5677888888876666666555555555555555544444443
No 176
>PF14443 DBC1: DBC1
Probab=25.73 E-value=60 Score=33.12 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=32.6
Q ss_pred ccCCcccccccCCCCC-CCCCCccccHHHHHHHHHHHHHH
Q 048767 36 TGKGKSIVAFTEPRTP-QNGVGLADDVESLAEKVSKLENE 74 (1041)
Q Consensus 36 ~~kGk~~~af~~~~~p-~~~~~~~~D~~aLia~iskLE~E 74 (1041)
+.+||.|+|.+-|=-| +||+|-..|..+||.-.-+-=++
T Consensus 13 ~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~ 52 (126)
T PF14443_consen 13 GKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKA 52 (126)
T ss_pred eecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHH
Confidence 3588999999988777 79999999999999877765554
No 177
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=25.60 E-value=1.6e+03 Score=29.35 Aligned_cols=59 Identities=19% Similarity=0.331 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH--HHHHHHhhhhhHHHHHhhhhhhhh
Q 048767 379 FDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEK--RLEKCKDKEKDVESKLKDLNGREK 437 (1041)
Q Consensus 379 ~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~--k~~~lkeKEkdl~~K~k~LkEkEk 437 (1041)
++++|.+|..+|-+-|--+...-+.+.--|..|-. +++++-+.|-.|..+.+++---+.
T Consensus 96 lE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee 156 (916)
T KOG0249|consen 96 LENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEE 156 (916)
T ss_pred HHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34555555555555554444444444433433332 266777777777777776654433
No 178
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.17 E-value=1.5e+03 Score=28.72 Aligned_cols=88 Identities=30% Similarity=0.325 Sum_probs=55.7
Q ss_pred hHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 441 SEEKNLETEKKQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLL 520 (1041)
Q Consensus 441 aeEK~le~ek~~L~~dkeei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~ 520 (1041)
..++.|+.-+..+..--++++.++...-.++..++.| .|+-++=.....=--+|+++++++-.+...|+
T Consensus 291 ~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-----------~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~ 359 (581)
T KOG0995|consen 291 HMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ-----------GISGEDVERMNLERNKLKRELNKIQSELDRLS 359 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555444444444444 44555544444445678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 048767 521 KEAEDLKQQKENFEKEWEQ 539 (1041)
Q Consensus 521 kEae~Lk~eKekFE~EWE~ 539 (1041)
+++=+++-+-+.|=++-+.
T Consensus 360 k~vw~~~l~~~~~f~~le~ 378 (581)
T KOG0995|consen 360 KEVWELKLEIEDFFKELEK 378 (581)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 9999999888888665443
No 179
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=24.93 E-value=1.1e+02 Score=37.82 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=15.2
Q ss_pred HhhhhhcchhheeeccchhhhHHHHHH
Q 048767 75 LFEYQYNMGLLLIEKKEWSSKYEELKQ 101 (1041)
Q Consensus 75 lydYQynMGLLLiEkKEwtSk~eel~q 101 (1041)
||-|.|-|.-|-=|=.-+.-.|.-+++
T Consensus 215 ~f~~~hp~~~l~kemdilkney~kvk~ 241 (782)
T PF07218_consen 215 LFAYKHPMEKLTKEMDILKNEYIKVKE 241 (782)
T ss_pred hhhccChHHHHHHHHHHHhhhhHHHHH
Confidence 455888887665444444444544444
No 180
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=24.89 E-value=8.9e+02 Score=26.08 Aligned_cols=85 Identities=19% Similarity=0.310 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhHHHHHHHHH
Q 048767 144 DLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRESALRMER 223 (1041)
Q Consensus 144 dLEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRer 223 (1041)
.=|+|+.+|..=|-.| ...=.+||.++.+...+.-.+....+-.++++..-...+---|+..+.--..|++..
T Consensus 6 ~He~af~~iK~YYndI-------T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L 78 (201)
T PF13851_consen 6 NHEKAFQEIKNYYNDI-------TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQL 78 (201)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3478888887777555 234568999999999999999989999999998888888888888888888888888
Q ss_pred hHHHHHHhhhhh
Q 048767 224 ASFIAEREAYEG 235 (1041)
Q Consensus 224 lSf~~Erea~E~ 235 (1041)
-.|..+.-++..
T Consensus 79 ~~y~kdK~~L~~ 90 (201)
T PF13851_consen 79 KNYEKDKQSLQN 90 (201)
T ss_pred HHHHHHHHHHHH
Confidence 877776665433
No 181
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=24.58 E-value=7.7e+02 Score=26.52 Aligned_cols=102 Identities=21% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHhhhhhhh---hcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhH
Q 048767 139 KQCVLDLEKALREMRSENAEIK---FTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESR 215 (1041)
Q Consensus 139 KqCVadLEKAL~emr~E~AEiK---~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaR 215 (1041)
.|++.+++.+|.++|...|.+. -..+.++.++...+...+.+-.-+=.+=.-.=|+.|=.
T Consensus 30 ~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~----------------- 92 (219)
T TIGR02977 30 RLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALI----------------- 92 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-----------------
Q ss_pred HHHHHHHHhHHHHHHhhhhhhhHHHhhhHHHHHHHhhhhhhhhhhhhh
Q 048767 216 ESALRMERASFIAEREAYEGTFSQQREDLREWERKLQDGEERLVKGQR 263 (1041)
Q Consensus 216 E~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqe~eerL~~~qr 263 (1041)
++.+|......++.++..++..+..-...|.+.+..|.+.+.
T Consensus 93 ------~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~ 134 (219)
T TIGR02977 93 ------EKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARA 134 (219)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 182
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=23.98 E-value=1.4e+03 Score=27.91 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=33.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 048767 489 RISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKEL 551 (1041)
Q Consensus 489 kiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~ 551 (1041)
.++.++=....||..-+-.=.-..+.+...|.+..-.|...+...+.|=..|+....+...+.
T Consensus 136 l~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~ 198 (420)
T COG4942 136 LVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQ 198 (420)
T ss_pred hcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444444433332222333445566666777777777777777666665555544433
No 183
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.96 E-value=4.6e+02 Score=28.52 Aligned_cols=54 Identities=30% Similarity=0.280 Sum_probs=37.7
Q ss_pred hhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhhhhhhhhHHH
Q 048767 256 ERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKEDDINK 309 (1041)
Q Consensus 256 erL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~~~~~Lk~keddi~~ 309 (1041)
++..+.|..+++++..+++-.....+..++|+.++.+++.....+....+++..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666777777767777777888888888888777777666665543
No 184
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=23.84 E-value=1.2e+03 Score=27.06 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=36.1
Q ss_pred hhhcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchH
Q 048767 159 IKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSE 204 (1041)
Q Consensus 159 iK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~ 204 (1041)
+....+-|...+..-..-+++..-++..+|.+|+..+..--+++.-
T Consensus 158 ~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 158 IDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4555677778888888888888888899999998888887766544
No 185
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=23.84 E-value=93 Score=39.86 Aligned_cols=46 Identities=24% Similarity=0.193 Sum_probs=22.4
Q ss_pred hhhHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHhhHHHHHHHHHHH
Q 048767 422 EKDVESKLKDLNGREKTMKSEEKNLETEKKQLLADKEDILTEKAEL 467 (1041)
Q Consensus 422 Ekdl~~K~k~LkEkEksL~aeEK~le~ek~~L~~dkeei~~lK~el 467 (1041)
|+.+-..++.-.+-+-..+|..=+...-++.++.=...|.++.-++
T Consensus 872 e~kypd~l~F~ddl~hv~kaSrvnad~ikK~~~~m~~~ik~Le~dl 917 (1102)
T KOG1924|consen 872 EEKYPDILKFPDDLEHVEKASRVNADEIKKNLQQMENQIKKLERDL 917 (1102)
T ss_pred HHhChhhhcchhhHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555565555555555555444444444444444444444333
No 186
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=23.67 E-value=1.7e+03 Score=28.99 Aligned_cols=187 Identities=21% Similarity=0.222 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcchhheeeccchhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhh--
Q 048767 60 DVESLAEKVSKLENELFEYQYNMGLLLIEKKEWSSKYEELKQTFAEAKDALKREQAAHLIAITDVEKREENLRKALGV-- 137 (1041)
Q Consensus 60 D~~aLia~iskLE~ElydYQynMGLLLiEkKEwtSk~eel~qa~~ea~~~lKREqaAhl~ALsEaeKREEnLkKALgv-- 137 (1041)
+..+.+.+|+.|-..|...=|----||-.+..|.-+++++..+++.. -.|-..|.++.---..++..+.-
T Consensus 503 eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwI--------ls~~~SLqDv~s~~sEIK~~f~~~s 574 (769)
T PF05911_consen 503 ELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWI--------LSNCFSLQDVSSMRSEIKKNFDGDS 574 (769)
T ss_pred cHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH--------HHccchHHHHHHHHHHHHHhhhhcc
Q ss_pred ------------hHHHHHhHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHH
Q 048767 138 ------------EKQCVLDLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEI 205 (1041)
Q Consensus 138 ------------EKqCVadLEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~a 205 (1041)
...|...|+.=|..|.. .|..-+..|+.++.-+....-++.|+|.+|....+.|+-++-..+.+
T Consensus 575 s~e~E~~~~dea~~~~~~el~eelE~le~----eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~ 650 (769)
T PF05911_consen 575 SSEAEINSEDEADTSEKKELEEELEKLES----EKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLA 650 (769)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hh-------hhhhhhhHHHHHHHHHhHHHHHHhhhhhhhHHHhhhHHHHHHHhhhhhhhh
Q 048767 206 ER-------KSHELESRESALRMERASFIAEREAYEGTFSQQREDLREWERKLQDGEERL 258 (1041)
Q Consensus 206 eR-------KL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqe~eerL 258 (1041)
+- +...++.|=..+.-+......-..++|.+|...|..-.|-.-+-++.++.|
T Consensus 651 E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el 710 (769)
T PF05911_consen 651 ETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEEL 710 (769)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
No 187
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=23.50 E-value=1e+02 Score=37.21 Aligned_cols=11 Identities=9% Similarity=0.135 Sum_probs=5.8
Q ss_pred ccHHHHHHHHH
Q 048767 59 DDVESLAEKVS 69 (1041)
Q Consensus 59 ~D~~aLia~is 69 (1041)
-++-||.|-|.
T Consensus 262 ~~~~AlFaqlN 272 (480)
T KOG2675|consen 262 GGRGALFAQLN 272 (480)
T ss_pred ccHHHHHHHHh
Confidence 34456666543
No 188
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=23.08 E-value=2.3e+02 Score=28.27 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=17.3
Q ss_pred HHhHHHHHHHHHhhhhhhhhcc
Q 048767 142 VLDLEKALREMRSENAEIKFTA 163 (1041)
Q Consensus 142 VadLEKAL~emr~E~AEiK~ts 163 (1041)
|+-|++||.++++.|..-...+
T Consensus 45 v~GLe~AL~~v~~~Ctd~~l~~ 66 (115)
T PF06476_consen 45 VAGLEKALEEVKAHCTDEGLKA 66 (115)
T ss_pred HHHHHHHHHHHHhhcCCchhhH
Confidence 6779999999999996655433
No 189
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=22.97 E-value=3.1e+02 Score=30.54 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=13.0
Q ss_pred HHHhhcccccchhhhh
Q 048767 736 FVEKQKKCEHCAEITS 751 (1041)
Q Consensus 736 ~vEklK~ckncg~~~~ 751 (1041)
+-.++.+|.-||.+++
T Consensus 186 ~~qkl~VCeVCGA~Ls 201 (254)
T PF03194_consen 186 QQQKLEVCEVCGAFLS 201 (254)
T ss_pred cccCccchhhhhhHHh
Confidence 4467899999999864
No 190
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=22.86 E-value=1.1e+03 Score=26.20 Aligned_cols=29 Identities=28% Similarity=0.532 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 505 LKEQIGKCRLQEEMLLKEAEDLKQQKENFEKE 536 (1041)
Q Consensus 505 LKeEId~~R~Qke~L~kEae~Lk~eKekFE~E 536 (1041)
|..+++.+|+ +|..|......+...|+.|
T Consensus 136 l~~e~erL~a---eL~~er~~~e~q~~~Fe~E 164 (202)
T PF06818_consen 136 LRREVERLRA---ELQRERQRREEQRSSFEQE 164 (202)
T ss_pred HHHHHHHHHH---HHHHHHHhHHHHHHHHHHH
Confidence 5555555554 3445555555566677665
No 191
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.42 E-value=5.4e+02 Score=26.86 Aligned_cols=36 Identities=39% Similarity=0.487 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 502 QSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEW 537 (1041)
Q Consensus 502 qseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EW 537 (1041)
..++++||+++..+-....+|++.||.|-+.+.+|.
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345677777777777778899999999999988875
No 192
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=21.98 E-value=1.3e+03 Score=26.74 Aligned_cols=142 Identities=18% Similarity=0.217 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048767 461 LTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQL 540 (1041)
Q Consensus 461 ~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~L 540 (1041)
.....+++..++.-+++..-+.+..+.-..+..-.+++.+--++=+-+-...+.+...-+.|.--+++|-.+..-|=+.+
T Consensus 78 ~~~q~~~e~~rv~~EE~Rkt~~~q~q~~~q~aqY~D~LaRkR~~~e~~~qr~~n~e~lk~QEes~~rqE~~Rr~Te~~i~ 157 (276)
T PF12037_consen 78 AQAQAEIERQRVEAEERRKTLQQQTQQKQQRAQYEDELARKRYQDELEQQRRRNEELLKMQEESVIRQEQMRRATEEQIL 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677888888888888888877777777777777766665444444555555555666667888888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHhHHHHHHhHHHHHHhhHhhhhHHHHHHHHH
Q 048767 541 DEKRAEVEKELKKISEQTEKLEKEKLSEEERIKRDKQLAEDHIKREWEALEVAKESFKATMDHEQSMITEKAESE 615 (1041)
Q Consensus 541 DEKR~el~KE~~~I~eere~le~~~~~E~erLK~Ek~~~~~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~E 615 (1041)
-.++..+..|++-= + .++..++ ....+.-++.+-++.-+-++....++..+|.-|.+-|+.=
T Consensus 158 ~~r~~t~~~eaeL~---~-------e~~~~k~---~AEa~gra~~eReN~Di~l~~l~~ka~e~R~t~lesI~t~ 219 (276)
T PF12037_consen 158 AQRRQTEEEEAELR---R-------ETERAKA---EAEAEGRAKEERENEDINLEQLRLKAEEERETVLESINTT 219 (276)
T ss_pred HHHHHhHHHHHHHH---H-------HHHHHHH---HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444443210 0 1111111 1222333333333333444556777777777777766543
No 193
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=21.65 E-value=2.2e+02 Score=26.23 Aligned_cols=53 Identities=19% Similarity=0.307 Sum_probs=45.1
Q ss_pred HHHHHhHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhhhch
Q 048767 139 KQCVLDLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSV 191 (1041)
Q Consensus 139 KqCVadLEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aA 191 (1041)
+.++..+.+.+..|+.+...+.--...-+..+|.+.+++..|...+..=..++
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v 77 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAV 77 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 67889999999999999999998888899999999998888887776555444
No 194
>PF14998 Ripply: Transcription Regulator
Probab=21.49 E-value=80 Score=30.53 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=33.0
Q ss_pred cCCCCccCCCCC-CCCCC-CCCCCCCCCCcccCCcccccccCCCCCCCCCCccccHHHHHHHHHHHHHHHhhhhhcchhh
Q 048767 8 ALSGWSLTPRGE-KNGTG-SVSNPTTVDGLTGKGKSIVAFTEPRTPQNGVGLADDVESLAEKVSKLENELFEYQYNMGLL 85 (1041)
Q Consensus 8 ~w~gws~tp~~~-~~g~~-~~~~~~~g~~~~~kGk~~~af~~~~~p~~~~~~~~D~~aLia~iskLE~ElydYQynMGLL 85 (1041)
.|--|..||+.. ....+ ....|++++.+...|+. ..|--|+-= +.- =+--|||-|+.|--
T Consensus 2 ~WRPW~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~-~~FqHPVRL---------------~wP--kSk~~dYLy~~gE~ 63 (87)
T PF14998_consen 2 LWRPWLSTPGDAERQRTRPRDLEPGGDGSAEGSKGL-SGFQHPVRL---------------YWP--KSKCYDYLYSEGEK 63 (87)
T ss_pred CcCCCCCCCCccccccCCCCCccCCCCcccccCCcc-cccCCceEe---------------ecc--chHHHHHHHHHHHH
Confidence 588998877755 22222 22333333344344554 556543321 111 13469999999966
Q ss_pred ee
Q 048767 86 LI 87 (1041)
Q Consensus 86 Li 87 (1041)
|+
T Consensus 64 lL 65 (87)
T PF14998_consen 64 LL 65 (87)
T ss_pred HH
Confidence 54
No 195
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=21.38 E-value=2e+03 Score=28.79 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=48.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHhHHHHHHhHHHHHHhhHhhhhHHHHHHHHHHHH
Q 048767 539 QLDEKRAEVEKELKKISEQTEKLEKEKLSEEERIKRDKQLAEDHIKREWEALEVAKESFKATMDHEQSMITEKAESERRQ 618 (1041)
Q Consensus 539 ~LDEKR~el~KE~~~I~eere~le~~~~~E~erLK~Ek~~~~~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad 618 (1041)
+|--|.++|-|..+...+|..+|.+.++.=...|+. .+.+|.-+...|+++=++-+.+|++=+. .-...|...
T Consensus 452 ~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~----~kq~~d~e~~rik~ev~eal~~~k~~q~---kLe~sekEN 524 (861)
T PF15254_consen 452 LLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLE----NKQQFDIETTRIKIEVEEALVNVKSLQF---KLEASEKEN 524 (861)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhh
Confidence 334444445444444444545554444333333332 3445666667777887888888875443 334466667
Q ss_pred HhhHHHHhhhhhH
Q 048767 619 LLHDFELQKRKLE 631 (1041)
Q Consensus 619 ~l~d~E~qkreLe 631 (1041)
++..|.++-|+-|
T Consensus 525 ~iL~itlrQrDaE 537 (861)
T PF15254_consen 525 QILGITLRQRDAE 537 (861)
T ss_pred hHhhhHHHHHHHH
Confidence 7777777666544
No 196
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=21.06 E-value=1.5e+03 Score=27.44 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhhhhhh
Q 048767 683 KLEKEKQEVDSHRKHLE 699 (1041)
Q Consensus 683 rLekEr~Ei~~~ke~le 699 (1041)
.|-.||.-+...-+++.
T Consensus 410 ~l~~ek~al~lqlErl~ 426 (511)
T PF09787_consen 410 SLGSEKNALRLQLERLE 426 (511)
T ss_pred HHHhhhhhccccHHHHH
Confidence 55556666665555554
No 197
>KOG2350 consensus Zn-finger protein joined to JAZF1 (predicted suppressor) [General function prediction only]
Probab=21.03 E-value=67 Score=35.08 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=46.6
Q ss_pred HhhhhhhhhccCCCCChhhhhhhccccCCCCCCcccccC-CCCCCCCchhHHHhHhhhhhccCCCCCcchhh
Q 048767 755 LSDLVQEIVKSEVPPLPRVANDYVNEKKNSEMSPDVLAS-GSPASAGTISWLRKCTSKIFKLSPSKKDENTV 825 (1041)
Q Consensus 755 LsdLq~d~e~~~~~~~~~~~d~~~~~~~~~~~sp~~~~~-~sp~S~g~~SwlrKCtskIFk~SP~Kk~e~~~ 825 (1041)
+++-+|-...++..+.-+.-+.|-+++++....||.+-. .+|++.+|+-=+-+||.++|.-+-.-+++.+.
T Consensus 15 ~~~~hp~~a~~~~~~~~~~d~~~~g~p~~~~~~pg~s~~~~~~~~~~p~t~i~~~~p~~~att~k~~aersd 86 (221)
T KOG2350|consen 15 NYVYHPKGARIDVSINECYDGSYAGNPQDIHRQPGFAFSRNGPVKRTPITHILVCRPKRTATTMKEFAERSD 86 (221)
T ss_pred eeecccccccccCCCCCcccccccCCcccccCCCCCCcccCCCCCCCcchhhhccchHhhhhcccccccccc
Confidence 666665444444433334444455566666666765443 38888889999999999999887766666654
No 198
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=21.03 E-value=8.2e+02 Score=24.75 Aligned_cols=96 Identities=26% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcchhheeeccchhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHH
Q 048767 61 VESLAEKVSKLENELFEYQYNMGLLLIEKKEWSSKYEELKQTFAEAKDALKREQAAHLIAITDVEKREENLRKALGVEKQ 140 (1041)
Q Consensus 61 ~~aLia~iskLE~ElydYQynMGLLLiEkKEwtSk~eel~qa~~ea~~~lKREqaAhl~ALsEaeKREEnLkKALgvEKq 140 (1041)
+..+-..++.|+.+|=+|-+.-|.|+=+|.++.+-...|++ ..++---.+++.+..=..+++.|.-+|+
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~-----------q~~s~~qr~~eLqaki~ea~~~le~eK~ 79 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQA-----------QNASRNQRIAELQAKIDEARRNLEDEKQ 79 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHhhhhhhhhcchhhhHHHH
Q 048767 141 CVLDLEKALREMRSENAEIKFTADSKLAEAN 171 (1041)
Q Consensus 141 CVadLEKAL~emr~E~AEiK~tsesKLaEA~ 171 (1041)
.-.+|+--|-..+. .|.-.+-||+||.
T Consensus 80 ak~~l~~r~~k~~~----dka~lel~l~e~~ 106 (107)
T PF09304_consen 80 AKLELESRLLKAQK----DKAILELKLAEAK 106 (107)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----hhhHHHHHHHhhc
No 199
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=20.83 E-value=7.9e+02 Score=23.95 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHH
Q 048767 145 LEKALREMRSENAEIKFTADSKLAEANALVTSI 177 (1041)
Q Consensus 145 LEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~ 177 (1041)
-++|+.+|+.+++.++..+.-|+..|-.||.++
T Consensus 67 k~~a~~elk~eia~L~~~a~~k~~~av~~~~~~ 99 (103)
T PRK08404 67 AKKILEEGEKEIEELKVKAEENFETAVSEAIKL 99 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999998764
No 200
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.66 E-value=9.8e+02 Score=28.21 Aligned_cols=65 Identities=20% Similarity=0.371 Sum_probs=43.4
Q ss_pred HHHHhhchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhh
Q 048767 372 IDQKRKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGRE 436 (1041)
Q Consensus 372 lE~kRKs~deel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LkEkE 436 (1041)
|.+-++++...+..-..-+.+--.+|..-=++|..||.-|+.+++-+-..=.....+++.++++=
T Consensus 225 m~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y 289 (359)
T PF10498_consen 225 MKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKY 289 (359)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666777788888888888888888888877766555555555544443
No 201
>PF02172 KIX: KIX domain; InterPro: IPR003101 The nuclear factor CREB activates transcription of target genes in part through direct interactions with the KIX domain of the coactivator CBP in a phosphorylation-dependent manner []. This provides a model for activator:coactivator interactions. The KIX domain of CBP also binds to transactivation domains of other nuclear factors including Myb and Jun.; GO: 0003712 transcription cofactor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2KWF_A 1KDX_A 2LQH_A 2LQI_A 1SB0_A 2AGH_B.
Probab=20.52 E-value=48 Score=31.35 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=23.1
Q ss_pred CCcccccccCCCCC--CCCCCccccHHHHHHHHHHHHHHHhh
Q 048767 38 KGKSIVAFTEPRTP--QNGVGLADDVESLAEKVSKLENELFE 77 (1041)
Q Consensus 38 kGk~~~af~~~~~p--~~~~~~~~D~~aLia~iskLE~Elyd 77 (1041)
-||-+-|+.|+|-| .+.+-| ..|++|.-++|.++|+
T Consensus 19 V~KLv~aI~P~pdp~a~~d~rm----~~l~~yarkvE~~~fe 56 (81)
T PF02172_consen 19 VHKLVQAIFPTPDPNAMNDPRM----KNLIEYARKVEKDMFE 56 (81)
T ss_dssp HHHHHHHHS-SSSCCCCCSHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCChhhhhhHHH----HHHHHHHHHHHHHHHH
Confidence 35554455544434 333333 5799999999999995
No 202
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=20.32 E-value=1.4e+03 Score=26.55 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=35.9
Q ss_pred hhhhhhhhhHHHHHHHHHhHHHHHHhhhhhhhHHHhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHHHhHHh
Q 048767 206 ERKSHELESRESALRMERASFIAEREAYEGTFSQQREDLREWERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKD 285 (1041)
Q Consensus 206 eRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqe~eerL~~~qr~LNqREe~~~E~~~~l~~keke 285 (1041)
+-.|.+++.|-.+|.-+---+.+|.++....+..||-.. -+..-+.+.-|.....+..|--++|-+ |.|..-+
T Consensus 51 esqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~---y~q~s~Leddlsqt~aikeql~kyiRe----LEQaNDd 123 (333)
T KOG1853|consen 51 ESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQF---YQQESQLEDDLSQTHAIKEQLRKYIRE----LEQANDD 123 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccH
Confidence 334555555555555555555555555544444444211 111222234444455555444444433 3444445
Q ss_pred HHHHHH
Q 048767 286 LEEAQE 291 (1041)
Q Consensus 286 LEe~qk 291 (1041)
||-++.
T Consensus 124 LErakR 129 (333)
T KOG1853|consen 124 LERAKR 129 (333)
T ss_pred HHHhhh
Confidence 554444
No 203
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.18 E-value=1.1e+03 Score=25.84 Aligned_cols=7 Identities=0% Similarity=0.306 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 048767 463 EKAELEK 469 (1041)
Q Consensus 463 lK~elEK 469 (1041)
++.+++.
T Consensus 151 ~~~~~~~ 157 (206)
T PRK10884 151 AQKKVDA 157 (206)
T ss_pred HHHHHHH
Confidence 3333333
Done!