Query 048767
Match_columns 1041
No_of_seqs 37 out of 39
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 22:47:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048767.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048767hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 97.8 4.9E-05 1.7E-09 93.8 10.6 39 701-739 1124-1162(1184)
2 1i84_S Smooth muscle myosin he 97.7 6.9E-05 2.4E-09 92.4 9.1 32 571-603 1148-1179(1184)
3 1c1g_A Tropomyosin; contractIl 97.5 0.085 2.9E-06 51.2 38.3 22 529-550 217-238 (284)
4 3na7_A HP0958; flagellar bioge 96.0 1.2 4.1E-05 46.4 22.7 64 491-555 3-66 (256)
5 3na7_A HP0958; flagellar bioge 94.6 5 0.00017 41.8 22.7 90 507-614 97-186 (256)
6 2dfs_A Myosin-5A; myosin-V, in 94.2 1 3.4E-05 56.1 18.0 92 503-618 987-1078(1080)
7 3vkg_A Dynein heavy chain, cyt 94.1 8.1 0.00028 53.3 27.2 28 223-251 1665-1692(3245)
8 3vkg_A Dynein heavy chain, cyt 91.6 24 0.00081 49.0 26.3 71 519-589 2033-2106(3245)
9 2dfs_A Myosin-5A; myosin-V, in 90.5 9.8 0.00033 47.6 19.9 30 503-532 1019-1048(1080)
10 2efr_A General control protein 89.6 18 0.00063 36.2 17.3 135 143-316 3-137 (155)
11 3oja_B Anopheles plasmodium-re 87.7 8.6 0.00029 43.3 15.4 70 458-530 463-532 (597)
12 2b9c_A Striated-muscle alpha t 76.1 26 0.00089 34.6 11.8 122 176-325 7-131 (147)
13 3oja_A Leucine-rich immune mol 75.4 48 0.0017 36.7 15.2 57 502-558 423-479 (487)
14 2v71_A Nuclear distribution pr 69.4 1.1E+02 0.0037 31.6 16.9 73 447-530 94-177 (189)
15 3oja_A Leucine-rich immune mol 65.0 1.2E+02 0.0039 33.7 15.3 55 659-720 429-483 (487)
16 3q8t_A Beclin-1; autophagy, AT 63.3 33 0.0011 31.6 8.9 63 675-737 7-69 (96)
17 3hnw_A Uncharacterized protein 59.0 59 0.002 31.7 10.3 59 504-562 72-130 (138)
18 2ocy_A RAB guanine nucleotide 57.9 1.6E+02 0.0053 29.7 13.2 132 64-227 11-142 (154)
19 2eqb_B RAB guanine nucleotide 55.7 1.3E+02 0.0043 28.4 11.3 65 130-197 30-94 (97)
20 3iyk_A VP5; icosahedral virus; 49.5 72 0.0025 37.3 10.4 96 47-153 83-221 (526)
21 3tnu_B Keratin, type II cytosk 46.8 1.6E+02 0.0056 27.8 11.0 122 241-381 6-128 (129)
22 2fxo_A Myosin heavy chain, car 46.7 2E+02 0.0067 27.4 16.5 39 504-542 80-118 (129)
23 3mq9_A Bone marrow stromal ant 43.0 94 0.0032 34.2 10.0 97 144-241 370-470 (471)
24 3nmd_A CGMP dependent protein 40.3 42 0.0014 30.1 5.4 48 297-344 18-65 (72)
25 3tnu_A Keratin, type I cytoske 37.3 2.3E+02 0.0079 26.9 10.4 34 347-381 97-130 (131)
26 2e7s_A RAB guanine nucleotide 36.9 60 0.0021 32.0 6.4 78 128-222 48-125 (135)
27 1kdx_A CBP; complex (transcrip 36.5 8.4 0.00029 35.0 0.4 36 38-77 19-56 (81)
28 3ghg_A Fibrinogen alpha chain; 31.8 2.1E+02 0.0071 33.8 10.6 10 925-934 455-464 (562)
29 1x8y_A Lamin A/C; structural p 31.3 2.5E+02 0.0087 25.1 9.1 53 321-382 30-82 (86)
30 1j1d_C Troponin I, TNI; THIN f 31.2 19 0.00065 35.4 1.9 58 42-99 45-105 (133)
31 3q8t_A Beclin-1; autophagy, AT 29.7 3.3E+02 0.011 25.0 13.2 40 517-556 14-53 (96)
32 3rfy_A Peptidyl-prolyl CIS-tra 28.9 1.7E+02 0.0059 32.8 9.2 123 42-179 12-147 (369)
33 3ghg_A Fibrinogen alpha chain; 26.9 7.5E+02 0.026 29.4 14.0 46 497-545 114-159 (562)
34 3hnw_A Uncharacterized protein 26.5 3.3E+02 0.011 26.5 9.6 12 423-434 35-46 (138)
35 1m1j_B Fibrinogen beta chain; 25.6 4E+02 0.014 30.9 11.5 54 242-295 100-160 (464)
36 3teq_A Stromal interaction mol 24.8 65 0.0022 30.5 4.1 42 159-200 22-78 (101)
37 1ytz_I Troponin I; muscle, THI 23.9 36 0.0012 35.0 2.5 54 42-96 43-99 (182)
38 3nmd_A CGMP dependent protein 23.8 1.2E+02 0.0041 27.2 5.4 36 265-300 35-70 (72)
39 2jee_A YIIU; FTSZ, septum, coi 21.9 4.6E+02 0.016 24.0 9.0 55 480-534 14-68 (81)
40 2qdq_A Talin-1; dimerisation d 21.8 82 0.0028 26.6 3.7 27 272-299 11-37 (50)
41 3ter_A Mammalian stromal inter 21.0 2.7E+02 0.0092 27.6 7.8 42 159-200 53-111 (136)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.80 E-value=4.9e-05 Score=93.78 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=0.0
Q ss_pred hhhhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 048767 701 EQVGIRKDIDMLVGLTKMLKEQREQIVKERDRFLNFVEK 739 (1041)
Q Consensus 701 e~~em~kdIeeL~~ls~KLk~QRE~~~~eRe~f~~~vEk 739 (1041)
+..++...+++......++..++..+..+...+-..|+.
T Consensus 1124 eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Iee 1162 (1184)
T 1i84_S 1124 HISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162 (1184)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444444444443333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.66 E-value=6.9e-05 Score=92.44 Aligned_cols=32 Identities=0% Similarity=0.094 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHhHHHHHHhhHh
Q 048767 571 RIKRDKQLAEDHIKREWEALEVAKESFKATMDH 603 (1041)
Q Consensus 571 rLK~Ek~~~~~~~krelE~L~~ekEsF~~~M~h 603 (1041)
.|..+...++..+. ++.......-+...+|+.
T Consensus 1148 ~L~~ele~L~~~Ie-el~~vn~aq~el~~~~e~ 1179 (1184)
T 1i84_S 1148 DLSEELEALKTELE-DTLDTTATQQELRGSDYK 1179 (1184)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHH-HHhhHHHHHHHHHhhhcc
Confidence 33344444444333 233333333344444443
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.49 E-value=0.085 Score=51.20 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 048767 529 QKENFEKEWEQLDEKRAEVEKE 550 (1041)
Q Consensus 529 eKekFE~EWE~LDEKR~el~KE 550 (1041)
....++.++..+......+...
T Consensus 217 ~~~~~~~~l~~l~~~~~~~~~~ 238 (284)
T 1c1g_A 217 KEDKYEEEIKVLSDKLKEAETR 238 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.00 E-value=1.2 Score=46.45 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 048767 491 SEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKIS 555 (1041)
Q Consensus 491 teeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~ 555 (1041)
|.+.=.-++.||. |=.+|+.++++...|-++.++|..+...+......+......+.++...+.
T Consensus 3 m~~~L~~L~~LQ~-lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e 66 (256)
T 3na7_A 3 SNTHLKQLIEISH-LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNE 66 (256)
T ss_dssp CHHHHHHHHHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445666664 445899999999999888888888888888777777666666666555443
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.65 E-value=5 Score=41.84 Aligned_cols=90 Identities=14% Similarity=0.114 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHh
Q 048767 507 EQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEERIKRDKQLAEDHIKRE 586 (1041)
Q Consensus 507 eEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~erLK~Ek~~~~~~~kre 586 (1041)
.||+....+...|..+.-++-...+..+.+++.+....+.++.++ +.++.+.++.-..+..+
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l------------------~~~~~~~~~~~~e~~~e 158 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA------------------LELESLVENEVKNIKET 158 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHH
Confidence 444444445555555555554444444444444444433333333 33445555666677778
Q ss_pred HHHHHHhHHHHHHhhHhhhhHHHHHHHH
Q 048767 587 WEALEVAKESFKATMDHEQSMITEKAES 614 (1041)
Q Consensus 587 lE~L~~ekEsF~~~M~hE~s~~~ek~q~ 614 (1041)
+..|.-.|+.|...|...=...+++|-.
T Consensus 159 ~~~l~~~r~~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 159 QQIIFKKKEDLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888888888988888666666666543
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.19 E-value=1 Score=56.10 Aligned_cols=92 Identities=15% Similarity=0.278 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 048767 503 SELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEERIKRDKQLAEDH 582 (1041)
Q Consensus 503 seLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le~~~~~E~erLK~Ek~~~~~~ 582 (1041)
..|.++|+..+.+-..+.+|-+.|++....... .|.+|-..|++ |-..|++..+++...
T Consensus 987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~------------------e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKE------------------QNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH------------------HHHHHHHHHHHHHHH
Confidence 455566666666666666666666554444432 33344444444 344455555555544
Q ss_pred HHHhHHHHHHhHHHHHHhhHhhhhHHHHHHHHHHHH
Q 048767 583 IKREWEALEVAKESFKATMDHEQSMITEKAESERRQ 618 (1041)
Q Consensus 583 ~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad 618 (1041)
+...-+.+. +.+-..|++++..+..-...||+.
T Consensus 1046 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1080)
T 2dfs_A 1046 IHDQAKEIT---ETMEKKLVEETKQLELDLNDERLR 1078 (1080)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444333 466666777766666666666654
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.07 E-value=8.1 Score=53.34 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=13.7
Q ss_pred HhHHHHHHhhhhhhhHHHhhhHHHHHHHh
Q 048767 223 RASFIAEREAYEGTFSQQREDLREWERKL 251 (1041)
Q Consensus 223 rlSf~~Erea~E~~i~~QRe~L~EweKkL 251 (1041)
..+|.+.++.+.=++++- =++.+|..-|
T Consensus 1665 LAa~i~~~~vfqi~i~k~-Y~~~~f~eDL 1692 (3245)
T 3vkg_A 1665 FVAWMNGLSIYTIKVNNN-YKSSDFDDDL 1692 (3245)
T ss_dssp HHHHHTTCEEECCC-----CCHHHHHHHH
T ss_pred HHHHHhCCeeEEEeeeCC-CCHHHHHHHH
Confidence 467777777776555542 2344444333
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.57 E-value=24 Score=48.99 Aligned_cols=71 Identities=13% Similarity=0.205 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHhHHHHHHHHHHHHHhHHH
Q 048767 519 LLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQT---EKLEKEKLSEEERIKRDKQLAEDHIKREWEA 589 (1041)
Q Consensus 519 L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eer---e~le~~~~~E~erLK~Ek~~~~~~~krelE~ 589 (1041)
+.++..+|....+....+++..-.+++.|+.++.....-= ++|-.=+.+|..|=...-..+..++..=.-.
T Consensus 2033 ~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2033 IVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHH
Confidence 3333344444444444444444444555555554433221 2233335577777777777776666554433
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.51 E-value=9.8 Score=47.55 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 503 SELKEQIGKCRLQEEMLLKEAEDLKQQKEN 532 (1041)
Q Consensus 503 seLKeEId~~R~Qke~L~kEae~Lk~eKek 532 (1041)
..|.+.|..+..+...|....|+|......
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555433333
No 10
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=89.56 E-value=18 Score=36.17 Aligned_cols=135 Identities=14% Similarity=0.201 Sum_probs=83.8
Q ss_pred HhHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhHHHHHHHH
Q 048767 143 LDLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRESALRME 222 (1041)
Q Consensus 143 adLEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRe 222 (1041)
..||.-|++. ++-|.. |..++.. ++.-+..+|.++.+|+++..+.---...+...|+.+++++..-...
T Consensus 3 ~~lE~qlkea-ae~ad~------KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqr 71 (155)
T 2efr_A 3 KQLEDKVEEL-LSKNYH------LENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQK 71 (155)
T ss_dssp HHHHHHHHHH-HHHHHH------HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhHH------HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 4577777777 555444 4446555 6666667788888888887766666666677777777665543211
Q ss_pred HhHHHHHHhhhhhhhHHHhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhhhh
Q 048767 223 RASFIAEREAYEGTFSQQREDLREWERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLMR 302 (1041)
Q Consensus 223 rlSf~~Erea~E~~i~~QRe~L~EweKkLqe~eerL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~~~~~Lk~ 302 (1041)
- +.++. .|-.++..|..=|-|+-...+.+.+.+++++.+.-.|...+...+.
T Consensus 72 E-------d~yEe---------------------qIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~ 123 (155)
T 2efr_A 72 E-------DKYEE---------------------EIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKA 123 (155)
T ss_dssp H-------HHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-------HHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11222 2222222233344555666666777777788777777777777777
Q ss_pred hhhhHHHHHHhhhh
Q 048767 303 KEDDINKRLANLIT 316 (1041)
Q Consensus 303 keddi~~rl~~L~~ 316 (1041)
-.++|...+..|+.
T Consensus 124 i~~eLd~tl~el~~ 137 (155)
T 2efr_A 124 ISEEMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777776665
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.71 E-value=8.6 Score=43.30 Aligned_cols=70 Identities=10% Similarity=0.134 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 458 EDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQK 530 (1041)
Q Consensus 458 eei~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eK 530 (1041)
.++..++.++....+.+.....+|....+.+.+..++..+. ...|++++.+.+.....+..+...++++.
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARS---SDNLNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCH---HHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 45555555555566666666666666666666554433222 24455555555554444444444444443
No 12
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=76.06 E-value=26 Score=34.58 Aligned_cols=122 Identities=24% Similarity=0.281 Sum_probs=74.9
Q ss_pred HHhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhHHHHHHHHHhHHHHHHhhhhhhhHHHhhhHHHHHHHhhhhh
Q 048767 176 SIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRESALRMERASFIAEREAYEGTFSQQREDLREWERKLQDGE 255 (1041)
Q Consensus 176 ~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqe~e 255 (1041)
-+++-+.-++.+|..|-.+|.+|.-...+.+|..+-+|.|...- +. ++.+.+
T Consensus 7 llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~d--------------eE--------------r~~~lE 58 (147)
T 2b9c_A 7 LVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKD--------------EE--------------KMEIQE 58 (147)
T ss_dssp ----CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH--------------HH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--------------HH--------------HHHHHH
Confidence 35566667788888888888888888888888888777776521 11 222223
Q ss_pred hhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhhhhhhhhH---HHHHHhhhhhHHHHHHHH
Q 048767 256 ERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKEDDI---NKRLANLITKEKEYDAAR 325 (1041)
Q Consensus 256 erL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~~~~~Lk~keddi---~~rl~~L~~kEke~~~~~ 325 (1041)
..|-+.+.+...=+.+.-+..+-+...+.+|+.+.-..+.+-...+..++.| .+.|.+|-..+..+..+.
T Consensus 59 ~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE 131 (147)
T 2b9c_A 59 IQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKN 131 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH
Confidence 3333444444444555566666667777777777777777777777777664 344555555555554444
No 13
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.42 E-value=48 Score=36.66 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 048767 502 QSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQT 558 (1041)
Q Consensus 502 qseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eer 558 (1041)
.+++-.|++..++.......+.+.|++++++-+++-+.+|..-++..-...+...+.
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 333334444444444444555555555555555555555555444444444444333
No 14
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=69.43 E-value=1.1e+02 Score=31.64 Aligned_cols=73 Identities=27% Similarity=0.244 Sum_probs=26.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 447 ETEKKQLLADKEDILTEKAELEKIRDANEQQ-----------LLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQ 515 (1041)
Q Consensus 447 e~ek~~L~~dkeei~~lK~elEK~~a~~e~q-----------~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Q 515 (1041)
+.+..+|...++.+....-+||-.-+.++.. ..+.+.+.++...+ +++|.+ =+.++..
T Consensus 94 q~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alL----------E~El~E-Ke~l~~~ 162 (189)
T 2v71_A 94 EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFL----------ESELDE-KESLLVS 162 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH-HHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----------HHHHHH-HHHHHHH
Confidence 3333444444444444444444444444444 44455555544444 444442 3344444
Q ss_pred HHHHHHHHHHHHHHH
Q 048767 516 EEMLLKEAEDLKQQK 530 (1041)
Q Consensus 516 ke~L~kEae~Lk~eK 530 (1041)
-.-|.-|+-||+++-
T Consensus 163 ~QRLkdE~rDLk~El 177 (189)
T 2v71_A 163 VQRLKDEARDLRQEL 177 (189)
T ss_dssp C--------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 445556666666654
No 15
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.96 E-value=1.2e+02 Score=33.67 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=25.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcHHHHHHHhHHHH
Q 048767 659 ELSNINYLRDIARKEMEEMKLERLKLEKEKQEVDSHRKHLEGEQVGIRKDIDMLVGLTKMLK 720 (1041)
Q Consensus 659 EL~~In~lke~a~kE~E~v~lE~~rLekEr~Ei~~~ke~le~e~~em~kdIeeL~~ls~KLk 720 (1041)
|.++++..-+....+.+++.-|..|++++-.+ ++.+..+++-..-.++++...|-
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 483 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGE-------ADLALASANATLQELVVREQNLA 483 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhh-------hhhhhHhcccHHHHHHHHHHHHH
Confidence 33334444444455555555444444444443 34444455544445554444443
No 16
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=63.29 E-value=33 Score=31.59 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 048767 675 EEMKLERLKLEKEKQEVDSHRKHLEGEQVGIRKDIDMLVGLTKMLKEQREQIVKERDRFLNFV 737 (1041)
Q Consensus 675 E~v~lE~~rLekEr~Ei~~~ke~le~e~~em~kdIeeL~~ls~KLk~QRE~~~~eRe~f~~~v 737 (1041)
+.+..++..|..|-..+...-+.++.+.+.+..+|..|..-+..|..+-+.|.++++.|..++
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql 69 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQ 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444555556666666666666667777777888888899999999999999999998886543
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=58.99 E-value=59 Score=31.74 Aligned_cols=59 Identities=25% Similarity=0.196 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 048767 504 ELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLE 562 (1041)
Q Consensus 504 eLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~eere~le 562 (1041)
+++++++.++.+...+.+|..+||.+....-..-+.+...-++|+++...+..+--.|+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777777776666666666655555555555555555444443
No 18
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.93 E-value=1.6e+02 Score=29.68 Aligned_cols=132 Identities=18% Similarity=0.260 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhhhhhcchhheeeccchhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHH
Q 048767 64 LAEKVSKLENELFEYQYNMGLLLIEKKEWSSKYEELKQTFAEAKDALKREQAAHLIAITDVEKREENLRKALGVEKQCVL 143 (1041)
Q Consensus 64 Lia~iskLE~ElydYQynMGLLLiEkKEwtSk~eel~qa~~ea~~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVa 143 (1041)
-|.+.+.||-+|..-.++.... +.=.+.|+.++.-+.... +-++.+..--.-|..+|.-|+.--.
T Consensus 11 Ain~qs~LeD~L~~~R~el~~~----~~ri~~lE~~r~~~~~l~-----------~~~~~~~~e~~~L~~~l~~E~~~R~ 75 (154)
T 2ocy_A 11 SVDKQSHLEEQLNKSLKTIASQ----KAAIENYNQLKEDYNTLK-----------RELSDRDDEVKRLREDIAKENELRT 75 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHTTHHHHHHHHHHH-----------THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-----------HHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4677888888888766664322 222233333333322211 2233344444446666666666666
Q ss_pred hHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhHHHHHHHHH
Q 048767 144 DLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRESALRMER 223 (1041)
Q Consensus 144 dLEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRer 223 (1041)
..|+.+..|..|.-+.- -|=+.+||-||+.+.... +.+-++...+...|.|.+.+=+.|+.+.
T Consensus 76 ~aE~~~~~ie~ElEeLT---asLFeEAN~MVa~ar~~~--------------~~~e~r~~~L~~ql~e~~~~l~~lq~ql 138 (154)
T 2ocy_A 76 KAEEEADKLNKEVEDLT---ASLFDEANNMVADARKEK--------------YAIEILNKRLTEQLREKDTLLDTLTLQL 138 (154)
T ss_dssp HHHTHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777765543 345889999998764443 3344555666666777777766666665
Q ss_pred hHHH
Q 048767 224 ASFI 227 (1041)
Q Consensus 224 lSf~ 227 (1041)
-.++
T Consensus 139 ~~LK 142 (154)
T 2ocy_A 139 KNLK 142 (154)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 19
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=55.66 E-value=1.3e+02 Score=28.41 Aligned_cols=65 Identities=18% Similarity=0.322 Sum_probs=40.6
Q ss_pred HHHHhhhhhHHHHHhHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHH
Q 048767 130 NLRKALGVEKQCVLDLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAE 197 (1041)
Q Consensus 130 nLkKALgvEKqCVadLEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAE 197 (1041)
-|...|.-|+.--...|..+..|..|.-+.- -|=+.+||.||+.+......+|.|...-.+-+++
T Consensus 30 ~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT---asLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 30 RLREDIAKENELRTKAEEEADKLNKEVEDLT---ASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555666666666655442 3457899999999977776666666555554443
No 20
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=49.49 E-value=72 Score=37.26 Aligned_cols=96 Identities=20% Similarity=0.357 Sum_probs=64.4
Q ss_pred CCCCCCCCCCccccHHHHHHHHHHHHHH------------------------HhhhhhcchhheeeccchhhhHHHHHHH
Q 048767 47 EPRTPQNGVGLADDVESLAEKVSKLENE------------------------LFEYQYNMGLLLIEKKEWSSKYEELKQT 102 (1041)
Q Consensus 47 ~~~~p~~~~~~~~D~~aLia~iskLE~E------------------------lydYQynMGLLLiEkKEwtSk~eel~qa 102 (1041)
+||-|++.|.. ++..+|..||.| +|.+..+.+-.-.+- ..+|+-|..|
T Consensus 83 ~~pDPLsPgE~-----~~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e---~~q~~~LekA 154 (526)
T 3iyk_A 83 EIPDPLSPGER-----GIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIED---EKQFDILNKA 154 (526)
T ss_pred CCCCCCCHhHH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH---HHHHHHHHHH
Confidence 46777877666 677777777765 778877776654422 2467888888
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH-------------------HHHHHhhhhhHHHHHhHHHHHHHHH
Q 048767 103 FAEAKDALKREQAAHLIAITDVEKRE-------------------ENLRKALGVEKQCVLDLEKALREMR 153 (1041)
Q Consensus 103 ~~ea~~~lKREqaAhl~ALsEaeKRE-------------------EnLkKALgvEKqCVadLEKAL~emr 153 (1041)
+.....+.+.|. ..|.-|+.|=.+| ++|++|+.+|++-. +|-|+.+|=
T Consensus 155 l~s~~~i~~~e~-~~l~~L~~AL~kE~~~Rt~dE~~mi~~yr~k~~aL~~aIe~Er~~~--~EEAIqe~~ 221 (526)
T 3iyk_A 155 VTSYNKILTEED-LQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGM--QEEAIQEIA 221 (526)
T ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHh
Confidence 888888777765 3455555555555 45677777777766 677776643
No 21
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=46.79 E-value=1.6e+02 Score=27.79 Aligned_cols=122 Identities=17% Similarity=0.306 Sum_probs=54.1
Q ss_pred hhhHHHHH-HHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhhhhhhhhHHHHHHhhhhhHH
Q 048767 241 REDLREWE-RKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKEDDINKRLANLITKEK 319 (1041)
Q Consensus 241 Re~L~Ewe-KkLqe~eerL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~~~~~Lk~keddi~~rl~~L~~kEk 319 (1041)
|.++-.|= .|+.+.+......-..|..=...|.+--+.+...+-+|+.++.....--.+|.+-+.... -
T Consensus 6 r~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~----------~ 75 (129)
T 3tnu_B 6 RTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE----------L 75 (129)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------H
Confidence 34444443 444444433333222333333345665566666666666555443333333322222111 1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHhHhhHHhhhhhhhHHHHHHhhchHH
Q 048767 320 EYDAARKSLEMKEEELRQLEEKLNAREKVEVEKLLDEHKASLDAKQREFDLEIDQKRKAFDD 381 (1041)
Q Consensus 320 e~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~de 381 (1041)
++......|...|.+|..+ +.+++..+.++..-|+.|. -++.||..-||.++-
T Consensus 76 ~l~~~q~~i~~lE~eL~~~--------r~e~~~ql~EYq~LlnvKl-~Ld~EIatYRkLLEg 128 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKA--------KQDMARLLREYQELMNTKL-ALDVEIATYRKLLEG 128 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHCc
Confidence 2233333444444444333 5778889999998888875 478899999998863
No 22
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=46.68 E-value=2e+02 Score=27.36 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048767 504 ELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDE 542 (1041)
Q Consensus 504 eLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDE 542 (1041)
+|-..|..+-.+.+........|-..|.+++.++..|-.
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555555555555555443
No 23
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.00 E-value=94 Score=34.20 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHHhhhh----hhhhhHHHHH
Q 048767 144 DLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKS----HELESRESAL 219 (1041)
Q Consensus 144 dLEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL----~eVEaRE~~L 219 (1041)
+.+.||.++...+..+ +..-.+-++|..-..-+++++.++...+..+++.-+-|||.--.+.-.| -.-++|-..|
T Consensus 370 t~eeal~~~~~~i~~~-l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (471)
T 3mq9_A 370 TVDEALKDAQTRITAA-RDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEEL 448 (471)
T ss_dssp CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666555433 2223445678888888999999999999999999999998754433332 2233343444
Q ss_pred HHHHhHHHHHHhhhhhhhHHHh
Q 048767 220 RMERASFIAEREAYEGTFSQQR 241 (1041)
Q Consensus 220 rRerlSf~~Erea~E~~i~~QR 241 (1041)
.-++..++.+.+..+++|..||
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 449 EGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444444444444443
No 24
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=40.29 E-value=42 Score=30.08 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=41.6
Q ss_pred hhhhhhhhhhHHHHHHhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 048767 297 NLSLMRKEDDINKRLANLITKEKEYDAARKSLEMKEEELRQLEEKLNA 344 (1041)
Q Consensus 297 ~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~a 344 (1041)
+.++...++.|..+.+.|..++.-+..++..|..|+.++..|+-.|..
T Consensus 18 mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 18 RGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999999999999999999988877654
No 25
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.31 E-value=2.3e+02 Score=26.92 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhHhhHHhhhhhhhHHHHHHhhchHH
Q 048767 347 KVEVEKLLDEHKASLDAKQREFDLEIDQKRKAFDD 381 (1041)
Q Consensus 347 ~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~de 381 (1041)
+.+++..+.+|..-|+.|. -++.||..-||.++-
T Consensus 97 r~em~~ql~EYq~Ll~vKl-~Ld~EIatYRkLLEG 130 (131)
T 3tnu_A 97 RCEMEQQNQEYKILLDVKT-RLEQEIATYRRLLEG 130 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHCc
Confidence 5678888999998888875 478999999998863
No 26
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.86 E-value=60 Score=32.04 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=42.5
Q ss_pred HHHHHHhhhhhHHHHHhHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHHhh
Q 048767 128 EENLRKALGVEKQCVLDLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIER 207 (1041)
Q Consensus 128 EEnLkKALgvEKqCVadLEKAL~emr~E~AEiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeR 207 (1041)
-..|..+|.-|+.--...|.....|..|.-+.- -|=+.+||.||+.+......+| ++...+.+
T Consensus 48 ~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LT---asLFeEAN~MVa~ar~~~~~~e--------------~r~~~L~~ 110 (135)
T 2e7s_A 48 VKRLREDIAKENELRTKAEEEADKLNKEVEDLT---ASLFDEANNLVADARMEKYAIE--------------ILNKRLTE 110 (135)
T ss_dssp HHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHH---HHHHHHHHHHHHHTTHHHHHHH--------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
Confidence 334555555555555555666666666655442 2457899999988755544444 44455555
Q ss_pred hhhhhhhHHHHHHHH
Q 048767 208 KSHELESRESALRME 222 (1041)
Q Consensus 208 KL~eVEaRE~~LrRe 222 (1041)
.|.|.+.+-+.|+-+
T Consensus 111 ql~e~e~ll~~lq~Q 125 (135)
T 2e7s_A 111 QLREKDMLLDTLTLQ 125 (135)
T ss_dssp TTTHHHHCC------
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554443
No 27
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=36.53 E-value=8.4 Score=35.02 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=24.1
Q ss_pred CCcccccccCCCCCC--CCCCccccHHHHHHHHHHHHHHHhh
Q 048767 38 KGKSIVAFTEPRTPQ--NGVGLADDVESLAEKVSKLENELFE 77 (1041)
Q Consensus 38 kGk~~~af~~~~~p~--~~~~~~~D~~aLia~iskLE~Elyd 77 (1041)
-+|-+-|+.|+|.|. +..-| .-|++|+.++|.++|+
T Consensus 19 v~Klv~aI~P~pdp~a~~d~rm----~~l~~yArkvE~~~ye 56 (81)
T 1kdx_A 19 VHKLVQAIFPTPDPAALKDRRM----ENLVAYAKKVEGDMYE 56 (81)
T ss_dssp HHHHHHHHSCCSSGGGGGSHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCChhhhhhHHH----HHHHHHHHHHHHHHHH
Confidence 355445556555563 33223 4699999999999996
No 28
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.83 E-value=2.1e+02 Score=33.82 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=0.0
Q ss_pred cccchHHHHH
Q 048767 925 SRTRSVKAVV 934 (1041)
Q Consensus 925 ~RtrSvkavv 934 (1041)
.|+--+|.||
T Consensus 455 G~kev~kEvv 464 (562)
T 3ghg_A 455 GHKEVTKEVV 464 (562)
T ss_dssp ----------
T ss_pred CCceeeEEee
Confidence 3444455554
No 29
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=31.33 E-value=2.5e+02 Score=25.14 Aligned_cols=53 Identities=32% Similarity=0.530 Sum_probs=37.3
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHhHhhHHhhhhhhhHHHHHHhhchHHH
Q 048767 321 YDAARKSLEMKEEELRQLEEKLNAREKVEVEKLLDEHKASLDAKQREFDLEIDQKRKAFDDD 382 (1041)
Q Consensus 321 ~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~dee 382 (1041)
+......+...|.+|..+ +.+++..+.++..-|+.|. -+|+||..-|+.++-+
T Consensus 30 l~~~q~~i~~lE~el~~~--------r~e~~~ql~EYq~LlnvK~-~Le~EIatYRkLLEGE 82 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEM--------RARMQQQLDEYQELLDIKL-ALDMEIHAYRKLLEGE 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHcCC
Confidence 334444444445555443 5678888999999898875 4789999999998754
No 30
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=31.18 E-value=19 Score=35.36 Aligned_cols=58 Identities=19% Similarity=0.328 Sum_probs=36.4
Q ss_pred cccccCCCCCCCCCCcc--ccHH-HHHHHHHHHHHHHhhhhhcchhheeeccchhhhHHHH
Q 048767 42 IVAFTEPRTPQNGVGLA--DDVE-SLAEKVSKLENELFEYQYNMGLLLIEKKEWSSKYEEL 99 (1041)
Q Consensus 42 ~~af~~~~~p~~~~~~~--~D~~-aLia~iskLE~ElydYQynMGLLLiEkKEwtSk~eel 99 (1041)
|+|.--||++++|-|.+ ++.. -|.++|..||.|=||+.|-+.---.|=++++.+...|
T Consensus 45 iLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl 105 (133)
T 1j1d_C 45 ALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (133)
T ss_dssp HHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHH
Confidence 34544455556665543 3332 5789999999999999998765444444444444444
No 31
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=29.67 E-value=3.3e+02 Score=24.98 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 048767 517 EMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISE 556 (1041)
Q Consensus 517 e~L~kEae~Lk~eKekFE~EWE~LDEKR~el~KE~~~I~e 556 (1041)
..|..|-..|-++...-|+|.+.||.=.+.++.|+.....
T Consensus 14 ~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 14 KELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 3344455555555555555556666555555555555543
No 32
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=28.86 E-value=1.7e+02 Score=32.78 Aligned_cols=123 Identities=19% Similarity=0.228 Sum_probs=77.8
Q ss_pred cccccCCCCC----CCCCCccccHHHHHHHH--------HHHHHHHhhhhhcchhheeeccchhhhHHHHHHHHHHHHHH
Q 048767 42 IVAFTEPRTP----QNGVGLADDVESLAEKV--------SKLENELFEYQYNMGLLLIEKKEWSSKYEELKQTFAEAKDA 109 (1041)
Q Consensus 42 ~~af~~~~~p----~~~~~~~~D~~aLia~i--------skLE~ElydYQynMGLLLiEkKEwtSk~eel~qa~~ea~~~ 109 (1041)
|+-|+.|+.| +..||-.+|..||+-|. -++..-|=|-.|.+ =+=-+|-|.+.-.-+++ |..+
T Consensus 12 ~~~~~~~~~~~~~~l~~g~~~~~~~a~lr~alp~~~~~~~~~q~~le~~~~~l--r~~~~k~~~~~~~~~~~----~~~~ 85 (369)
T 3rfy_A 12 ILLVANPVIPDVSVLISGPPIKDPEALLRYALPIDNKAIREVQKPLEDITDSL--KIAGVKALDSVERNVRQ----ASRT 85 (369)
T ss_dssp EEEEECTTSCSCCEEEESTTSCCHHHHHHHHSCCCCHHHHHHHHHHHTHHHHT--TSCSTTTHHHHHHHHHH----HHHH
T ss_pred EEEEecccCchhhccCCCCCCCCHHHHHhhhcCCCChhHHHHHHHHHHHHHHh--ccccCCCchHHHHHHHH----HHHH
Confidence 4777777777 46677789999988764 44444444444443 12245888876555554 6778
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHhhhhh-hhhcchhhhHHHHHHHHHHhh
Q 048767 110 LKREQAAHLIAITDVEKREENLRKALGVEKQCVLDLEKALREMRSENAE-IKFTADSKLAEANALVTSIEE 179 (1041)
Q Consensus 110 lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AE-iK~tsesKLaEA~aLv~~~ee 179 (1041)
|.+.+++-|.++.+..|-. | .+-++.|.-.|.+|+.-... -|-.-..+.++|...|..+++
T Consensus 86 ~~~~~~~il~~v~~~~~~~-------~--~~~~~~l~~~l~~l~~~~~~~d~~~~~~~~~~~l~~v~~le~ 147 (369)
T 3rfy_A 86 LQQGKSIIVAGFAESKKDH-------G--NEMIEKLEAGMQDMLKIVEDRKRDAVAPKQKEILKYVGGIEE 147 (369)
T ss_dssp HSCHHHHHTTTCCGGGHHH-------H--HHHHHHHHHHHHHHHCCCSSCCCSSSGGGHHHHHHHHHHHHH
T ss_pred HhhCHHHHHhhcChhhHHH-------H--HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998865433 1 22467777778777763221 122333456667777766664
No 33
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.90 E-value=7.5e+02 Score=29.36 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 048767 497 EYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRA 545 (1041)
Q Consensus 497 E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE~EWE~LDEKR~ 545 (1041)
||-+=..-||++|+..=.+...|..=++++..+.+|.|.. ||-|..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvD---Idiqir 159 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVD---IDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 4444455566666666677788888888899999998874 665554
No 34
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.48 E-value=3.3e+02 Score=26.51 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=5.9
Q ss_pred hhHHHHHhhhhh
Q 048767 423 KDVESKLKDLNG 434 (1041)
Q Consensus 423 kdl~~K~k~LkE 434 (1041)
..|+.|...++.
T Consensus 35 ~~vd~km~ei~~ 46 (138)
T 3hnw_A 35 SYINNKITEFNK 46 (138)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 345555555553
No 35
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=25.62 E-value=4e+02 Score=30.86 Aligned_cols=54 Identities=9% Similarity=0.155 Sum_probs=39.4
Q ss_pred hhHHHHHHHhhhhhhhhh-------hhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHH
Q 048767 242 EDLREWERKLQDGEERLV-------KGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDA 295 (1041)
Q Consensus 242 e~L~EweKkLqe~eerL~-------~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~ 295 (1041)
.+|++.+..|++..+.-. ..|..+++++..+.++...++.....||..+..|..
T Consensus 100 ~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~ 160 (464)
T 1m1j_B 100 PVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKD 160 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 445555666655554333 467778999999999999999899999988887753
No 36
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=24.79 E-value=65 Score=30.51 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=34.7
Q ss_pred hhhcchhhhHHHHHHHHHHhhh---------------hHHHHhhhhchhhHHHHhhh
Q 048767 159 IKFTADSKLAEANALVTSIEEK---------------SLEVEVKLRSVDAKVAEINR 200 (1041)
Q Consensus 159 iK~tsesKLaEA~aLv~~~eeK---------------slEvE~KL~aAeaklAEa~R 200 (1041)
-|..++.+|..|..-++.+.+| +++|+.++++|...+.++.+
T Consensus 22 kk~~aekql~~A~e~~eKl~KKrsS~~gs~~~ahs~slD~vD~~Il~Ak~aL~evt~ 78 (101)
T 3teq_A 22 KKQNAEKQLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEATA 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTCGGGGGTTCHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHhhhchheeeehhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999999 46788888888888887765
No 37
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=23.93 E-value=36 Score=35.00 Aligned_cols=54 Identities=17% Similarity=0.285 Sum_probs=35.0
Q ss_pred cccccCCCCCCCCCCcc--ccHH-HHHHHHHHHHHHHhhhhhcchhheeeccchhhhH
Q 048767 42 IVAFTEPRTPQNGVGLA--DDVE-SLAEKVSKLENELFEYQYNMGLLLIEKKEWSSKY 96 (1041)
Q Consensus 42 ~~af~~~~~p~~~~~~~--~D~~-aLia~iskLE~ElydYQynMGLLLiEkKEwtSk~ 96 (1041)
|+|---||++++| |.+ ++.. -|.++|..||.|-||+.|-+.--=.|=.+++.+.
T Consensus 43 iLaER~kPLnid~-se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV 99 (182)
T 1ytz_I 43 YLAEHSPPLSLPG-SMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKL 99 (182)
T ss_dssp HHHHHSCCCCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHhCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHH
Confidence 3454446666787 765 2222 6788999999999999998765433333333333
No 38
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.77 E-value=1.2e+02 Score=27.21 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=26.9
Q ss_pred hhhhHHhhhhhHHHHHHhHHhHHHHHHhHHHhhhhh
Q 048767 265 VNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSL 300 (1041)
Q Consensus 265 LNqREe~~~E~~~~l~~kekeLEe~qkkie~~~~~L 300 (1041)
|.++++.|.+-+..+..|+.++-+++..+|.-.+++
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 567777777777777778888888888777766554
No 39
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.93 E-value=4.6e+02 Score=23.96 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=26.2
Q ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048767 480 KIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFE 534 (1041)
Q Consensus 480 qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qke~L~kEae~Lk~eKekFE 534 (1041)
+|.++.+.+..++-|=.|+-.--..|.++.+..|.....|..|...|+++...|.
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3334444433334444444433444555555555555555555555555555443
No 40
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=21.78 E-value=82 Score=26.63 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=20.2
Q ss_pred hhhhHHHHHHhHHhHHHHHHhHHHhhhh
Q 048767 272 ANEKEKIFKQKEKDLEEAQEKIDATNLS 299 (1041)
Q Consensus 272 ~~E~~~~l~~kekeLEe~qkkie~~~~~ 299 (1041)
|+....+|+ +|++||+|+++|-..+..
T Consensus 11 i~Aqe~iLr-~ErELEeAr~~La~iR~~ 37 (50)
T 2qdq_A 11 IAAQEEMLR-KERELEEARKKLAQIRQQ 37 (50)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 344445776 999999999998877654
No 41
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=20.98 E-value=2.7e+02 Score=27.61 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=35.0
Q ss_pred hhhcchhhhHHHHHHHHHHhhh-----------------hHHHHhhhhchhhHHHHhhh
Q 048767 159 IKFTADSKLAEANALVTSIEEK-----------------SLEVEVKLRSVDAKVAEINR 200 (1041)
Q Consensus 159 iK~tsesKLaEA~aLv~~~eeK-----------------slEvE~KL~aAeaklAEa~R 200 (1041)
-|-.++.+|..|...++.+.+| +.+|+.++++|...+.++.+
T Consensus 53 kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs~~sslD~vD~~Il~Ak~aL~evt~ 111 (136)
T 3ter_A 53 QRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATGAASTSDQVDSKIFALKSRMEKIHT 111 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC------CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhchheeeeeecCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999 36788888888888887765
Done!