Query 048767
Match_columns 1041
No_of_seqs 37 out of 39
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 22:47:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048767.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048767hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ap3a1 a.24.27.1 (A:12-196) H 77.3 18 0.0013 30.1 16.2 9 475-483 171-179 (185)
2 d1f5na1 a.114.1.1 (A:284-583) 37.8 1.5E+02 0.011 27.3 20.0 10 532-541 180-189 (300)
3 d1f5na1 a.114.1.1 (A:284-583) 31.9 1.9E+02 0.014 26.7 20.9 12 352-363 69-80 (300)
4 d1zu2a1 a.118.8.1 (A:1-145) Mi 19.8 49 0.0036 28.5 4.6 45 66-110 65-109 (145)
5 d1k4ta1 a.2.8.1 (A:641-712) Eu 12.7 3.5E+02 0.026 22.3 8.2 47 436-482 1-52 (72)
6 d1sb0a_ a.12.1.1 (A:) Kix doma 12.4 25 0.0019 30.3 0.5 16 62-77 41-56 (87)
7 d1nkpa_ a.38.1.1 (A:) Myc prot 11.1 1.6E+02 0.012 23.9 5.3 43 701-743 43-88 (88)
8 d1qvra2 c.37.1.20 (A:149-535) 9.2 2.7E+02 0.02 28.3 7.3 93 445-537 257-363 (387)
9 d1pfta_ g.41.3.1 (A:) Transcri 8.9 20 0.0015 27.7 -1.3 13 742-754 26-38 (50)
10 d1bjta_ e.11.1.1 (A:) DNA topo 8.2 2.3E+02 0.017 31.5 6.7 41 506-546 708-757 (760)
No 1
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=77.32 E-value=18 Score=30.06 Aligned_cols=9 Identities=22% Similarity=0.250 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 048767 475 EQQLLKIYE 483 (1041)
Q Consensus 475 e~q~~qi~e 483 (1041)
.....++..
T Consensus 171 ~~~~~~~~~ 179 (185)
T d2ap3a1 171 TKVLNKVQK 179 (185)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 2
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.75 E-value=1.5e+02 Score=27.33 Aligned_cols=10 Identities=20% Similarity=0.312 Sum_probs=4.5
Q ss_pred HHHHHHHHhH
Q 048767 532 NFEKEWEQLD 541 (1041)
Q Consensus 532 kFE~EWE~LD 541 (1041)
.|...|+.+.
T Consensus 180 ~~~~~~~~~~ 189 (300)
T d1f5na1 180 TYLKSKESMT 189 (300)
T ss_dssp HHHHHTHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 3
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.86 E-value=1.9e+02 Score=26.65 Aligned_cols=12 Identities=42% Similarity=0.518 Sum_probs=5.2
Q ss_pred HHHHHhHhhHHh
Q 048767 352 KLLDEHKASLDA 363 (1041)
Q Consensus 352 kLldeh~a~L~~ 363 (1041)
.|.+.|..++..
T Consensus 69 el~~~h~~~~~~ 80 (300)
T d1f5na1 69 ELLDLHRDSERE 80 (300)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 4
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=19.79 E-value=49 Score=28.47 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhhhcchhheeeccchhhhHHHHHHHHHHHHHHH
Q 048767 66 EKVSKLENELFEYQYNMGLLLIEKKEWSSKYEELKQTFAEAKDAL 110 (1041)
Q Consensus 66 a~iskLE~ElydYQynMGLLLiEkKEwtSk~eel~qa~~ea~~~l 110 (1041)
.++.+|.-.-++.-||||.++.+...+..........+..|..++
T Consensus 65 ~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~ 109 (145)
T d1zu2a1 65 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFF 109 (145)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhh
Confidence 455566667788889999999998887766666555555555544
No 5
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.71 E-value=3.5e+02 Score=22.26 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=34.8
Q ss_pred hhhhhhHHhhhHHHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 048767 436 EKTMKSEEKNLETEKKQLLADKEDILTEKAELE-----KIRDANEQQLLKIY 482 (1041)
Q Consensus 436 EksL~aeEK~le~ek~~L~~dkeei~~lK~elE-----K~~a~~e~q~~qi~ 482 (1041)
|+||......|...+.+|..-+.++..++.+.- +++..++..+.++.
T Consensus 1 eKsMenLq~KI~~Kk~qi~~a~~e~K~ak~d~k~~~~~k~k~~~ekKkK~le 52 (72)
T d1k4ta1 1 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQ 52 (72)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 578888888888888888888888888887775 55555555544444
No 6
>d1sb0a_ a.12.1.1 (A:) Kix domain of CBP (creb binding protein) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.44 E-value=25 Score=30.31 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 048767 62 ESLAEKVSKLENELFE 77 (1041)
Q Consensus 62 ~aLia~iskLE~Elyd 77 (1041)
.-|++|+-+.|.++|+
T Consensus 41 ~~L~~YarkvE~~~ye 56 (87)
T d1sb0a_ 41 ENLVAYAKKVEGDMYE 56 (87)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5899999999999995
No 7
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.05 E-value=1.6e+02 Score=23.85 Aligned_cols=43 Identities=16% Similarity=0.341 Sum_probs=28.2
Q ss_pred hhhhhhhcHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 048767 701 EQVGIRKDIDMLVGLT---KMLKEQREQIVKERDRFLNFVEKQKKC 743 (1041)
Q Consensus 701 e~~em~kdIeeL~~ls---~KLk~QRE~~~~eRe~f~~~vEklK~c 743 (1041)
-+.-+..-|+-+..|. ..|....+.+......+...+.+|.+|
T Consensus 43 K~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~gc 88 (88)
T d1nkpa_ 43 KVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGGC 88 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445555555554444 455556667777777888888888888
No 8
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=9.21 E-value=2.7e+02 Score=28.31 Aligned_cols=93 Identities=27% Similarity=0.321 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 048767 445 NLETEKKQLLADKEDILTEKA-ELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQE------- 516 (1041)
Q Consensus 445 ~le~ek~~L~~dkeei~~lK~-elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEId~~R~Qk------- 516 (1041)
.++.+..+|..+++.+.+-+. +....+..++.++..+.+...+|...-..-...+.-..+||++|+.+|.+.
T Consensus 257 ~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A~r~g 336 (387)
T d1qvra2 257 ALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQY 336 (387)
T ss_dssp HHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHH
Q 048767 517 ------EMLLKEAEDLKQQKENFEKEW 537 (1041)
Q Consensus 517 ------e~L~kEae~Lk~eKekFE~EW 537 (1041)
+..-.+.-.|+.+...+..+|
T Consensus 337 d~e~AaeL~y~~ip~le~el~~l~~~~ 363 (387)
T d1qvra2 337 DLNRAAELRYGELPKLEAEVEALSEKL 363 (387)
T ss_dssp CHHHHHHHHTTHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHhhchHHHHHHHHHHHHHHh
No 9
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=8.88 E-value=20 Score=27.69 Aligned_cols=13 Identities=23% Similarity=0.667 Sum_probs=10.0
Q ss_pred ccccchhhhhhhh
Q 048767 742 KCEHCAEITSEFV 754 (1041)
Q Consensus 742 ~ckncg~~~~efv 754 (1041)
.|.+||.|+.+.+
T Consensus 26 vC~~CG~Viee~~ 38 (50)
T d1pfta_ 26 VCAKCGYVIEENI 38 (50)
T ss_dssp EESSSCCBCCCCC
T ss_pred ecccCCcEecccc
Confidence 6899998876654
No 10
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.21 E-value=2.3e+02 Score=31.53 Aligned_cols=41 Identities=27% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhHHHHHH
Q 048767 506 KEQIGKCRLQEEMLLKEAEDL---------KQQKENFEKEWEQLDEKRAE 546 (1041)
Q Consensus 506 KeEId~~R~Qke~L~kEae~L---------k~eKekFE~EWE~LDEKR~e 546 (1041)
+++|+++..+...|.+|.+.| +.+...|+++|...++++++
T Consensus 708 ~eei~kL~~E~~~l~~Ei~~L~~~t~~~lW~~DL~~l~~~y~k~~~~~~e 757 (760)
T d1bjta_ 708 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAE 757 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Done!