BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048768
         (151 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2-
          Insights Into The Structural Basis Of A Multifunctional
          (Iso) Flavonoid Glycosyltransferase
          Length = 482

 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 12/73 (16%)

Query: 10 PYVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRHRS----DVFSRCIN 63
          P+V++ P    GH+  + KLA+LL   G  ITF+NTE  H RL++ R     D F+    
Sbjct: 9  PHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFT---- 64

Query: 64 LPGFQFKTITDRL 76
             F F++I D L
Sbjct: 65 --DFNFESIPDGL 75


>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
          Deinococcus Radiodurans
 pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
          Deinococcus Radiodurans
 pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
          Deinococcus Radiodurans
 pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
          Deinococcus Radiodurans
          Length = 430

 Score = 30.0 bits (66), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 11/57 (19%), Positives = 29/57 (50%)

Query: 17 LAALGHVMLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTIT 73
          +A +GH   ++ E +     ++ F++  +F   ++   +   +R + LP F+F  ++
Sbjct: 40 VANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVS 96


>pdb|2GWL|A Chain A, Crystal Structure Of The Salmonella Spvb Atr Domain In
           Complex With Nadh
          Length = 200

 Score = 27.3 bits (59), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 44  EEFHDRLIRHRSDVFSRCINLPGFQFKTITDRLPLNHPRISDKLHEYW--------NGFM 95
           EEF + +  + +D+     +LP    + +   L L+ P +SD L EY           FM
Sbjct: 50  EEFKNAMSVYINDIAEGLSSLPETDHRVVYRGLKLDKPALSDVLKEYTTIGNIIIDKAFM 109

Query: 96  SFAIDVA 102
           S + D A
Sbjct: 110 STSPDKA 116


>pdb|2GWM|A Chain A, Crystal Structure Of The Salmonella Spvb Atr Domain
          Length = 200

 Score = 27.3 bits (59), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 44  EEFHDRLIRHRSDVFSRCINLPGFQFKTITDRLPLNHPRISDKLHEYW--------NGFM 95
           EEF + +  + +D+     +LP    + +   L L+ P +SD L EY           FM
Sbjct: 51  EEFKNAMSVYINDIAEGLSSLPETDHRVVYRGLKLDKPALSDVLKEYTTIGNIIIDKAFM 110

Query: 96  SFAIDVA 102
           S + D A
Sbjct: 111 STSPDKA 117


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.143    0.460 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,278,039
Number of Sequences: 62578
Number of extensions: 153464
Number of successful extensions: 351
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 4
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)