Query 048768
Match_columns 151
No_of_seqs 146 out of 1049
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 13:00:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02670 transferase, transfer 99.9 7.8E-25 1.7E-29 186.9 13.9 123 6-135 3-160 (472)
2 PLN02410 UDP-glucoronosyl/UDP- 99.9 1.3E-24 2.8E-29 184.8 13.1 116 8-133 6-153 (451)
3 PLN02863 UDP-glucoronosyl/UDP- 99.9 1.9E-24 4.2E-29 184.8 13.1 117 5-128 5-157 (477)
4 PLN02562 UDP-glycosyltransfera 99.9 2.9E-24 6.3E-29 182.5 13.1 119 9-134 6-152 (448)
5 PLN02152 indole-3-acetate beta 99.9 2.3E-24 4.9E-29 183.4 12.4 115 7-128 1-149 (455)
6 PLN02173 UDP-glucosyl transfer 99.9 3.5E-24 7.6E-29 182.0 12.2 107 10-125 6-144 (449)
7 PLN00164 glucosyltransferase; 99.9 6.9E-24 1.5E-28 181.5 12.4 121 7-130 1-155 (480)
8 PLN02534 UDP-glycosyltransfera 99.9 2.4E-23 5.2E-28 178.5 13.1 119 5-126 3-160 (491)
9 PLN02992 coniferyl-alcohol glu 99.9 2.5E-23 5.3E-28 178.0 12.0 116 8-130 4-149 (481)
10 PLN02555 limonoid glucosyltran 99.9 3.8E-23 8.3E-28 176.9 12.0 119 9-128 7-159 (480)
11 PLN02207 UDP-glycosyltransfera 99.9 5.9E-23 1.3E-27 175.2 12.7 121 7-130 1-160 (468)
12 PLN02554 UDP-glycosyltransfera 99.9 6.7E-23 1.5E-27 175.4 12.6 123 9-132 2-159 (481)
13 PLN03004 UDP-glycosyltransfera 99.9 8.4E-23 1.8E-27 173.7 12.1 120 7-129 1-156 (451)
14 PLN02210 UDP-glucosyl transfer 99.9 2.2E-22 4.8E-27 171.3 11.6 112 9-127 8-145 (456)
15 PLN00414 glycosyltransferase f 99.9 3.9E-22 8.4E-27 169.4 11.8 108 9-125 4-146 (446)
16 PLN02167 UDP-glycosyltransfera 99.9 1E-21 2.2E-26 167.9 12.5 120 7-129 1-162 (475)
17 PLN02448 UDP-glycosyltransfera 99.9 2.4E-21 5.2E-26 165.0 13.2 120 7-135 8-158 (459)
18 PLN03015 UDP-glucosyl transfer 99.9 2E-21 4.4E-26 165.8 12.4 121 7-130 1-153 (470)
19 PLN02764 glycosyltransferase f 99.9 1.6E-21 3.5E-26 165.7 11.7 112 8-125 4-147 (453)
20 PLN03007 UDP-glucosyltransfera 99.9 8E-21 1.7E-25 162.7 12.8 123 4-127 1-164 (482)
21 PLN02208 glycosyltransferase f 99.8 7.5E-21 1.6E-25 161.4 11.6 111 9-128 4-148 (442)
22 cd03784 GT1_Gtf_like This fami 99.0 1E-09 2.2E-14 90.9 6.0 96 11-118 2-137 (401)
23 TIGR01426 MGT glycosyltransfer 98.8 9.4E-09 2E-13 85.3 7.5 90 15-116 1-123 (392)
24 KOG1192 UDP-glucuronosyl and U 98.7 1E-08 2.2E-13 87.3 2.3 121 9-129 5-159 (496)
25 PF03033 Glyco_transf_28: Glyc 98.3 5.3E-06 1.2E-10 58.9 8.0 94 12-117 1-132 (139)
26 PF00201 UDPGT: UDP-glucoronos 97.1 0.00046 1E-08 59.0 4.0 108 11-130 2-145 (500)
27 COG1819 Glycosyl transferases, 96.5 0.0039 8.5E-08 52.8 4.9 44 10-53 2-47 (406)
28 PHA03392 egt ecdysteroid UDP-g 95.6 0.02 4.4E-07 49.8 5.1 35 10-44 21-58 (507)
29 PF13528 Glyco_trans_1_3: Glyc 95.4 0.11 2.4E-06 41.5 8.4 36 11-48 2-40 (318)
30 TIGR03590 PseG pseudaminic aci 91.7 0.25 5.4E-06 39.6 4.0 31 17-47 11-43 (279)
31 COG3980 spsG Spore coat polysa 91.5 0.21 4.6E-06 40.7 3.3 33 16-48 11-45 (318)
32 PRK02261 methylaspartate mutas 87.7 2.2 4.7E-05 30.8 5.9 47 7-53 1-49 (137)
33 PF13579 Glyco_trans_4_4: Glyc 84.5 1.5 3.2E-05 30.3 3.6 40 24-73 7-46 (160)
34 COG4671 Predicted glycosyl tra 82.3 3.8 8.2E-05 34.6 5.6 55 9-74 9-69 (400)
35 TIGR00661 MJ1255 conserved hyp 81.0 3.2 7E-05 33.5 4.8 32 13-45 4-37 (321)
36 PLN02871 UDP-sulfoquinovose:DA 80.0 4.9 0.00011 34.1 5.8 40 7-46 56-102 (465)
37 TIGR01133 murG undecaprenyldip 79.7 4.4 9.6E-05 32.4 5.2 35 11-45 2-38 (348)
38 PRK00726 murG undecaprenyldiph 78.1 5.7 0.00012 32.1 5.4 35 11-45 3-39 (357)
39 cd04955 GT1_like_6 This family 77.0 6.1 0.00013 31.3 5.2 28 19-46 13-43 (363)
40 KOG2941 Beta-1,4-mannosyltrans 75.8 10 0.00022 32.2 6.2 62 2-74 5-70 (444)
41 PF13439 Glyco_transf_4: Glyco 75.4 5.2 0.00011 28.0 4.0 24 24-47 18-41 (177)
42 PRK12446 undecaprenyldiphospho 75.1 8.1 0.00018 31.9 5.6 38 11-48 3-42 (352)
43 cd03785 GT1_MurG MurG is an N- 74.7 6.6 0.00014 31.4 4.9 34 12-45 2-37 (350)
44 KOG2585 Uncharacterized conser 74.1 6.5 0.00014 33.9 4.8 43 1-43 258-301 (453)
45 cd04962 GT1_like_5 This family 72.5 4.2 9.1E-05 32.5 3.2 34 12-45 3-39 (371)
46 cd03805 GT1_ALG2_like This fam 72.4 6.4 0.00014 31.9 4.3 32 14-45 6-40 (392)
47 cd03808 GT1_cap1E_like This fa 71.5 7.9 0.00017 29.8 4.5 37 12-48 2-40 (359)
48 cd03820 GT1_amsD_like This fam 71.2 8.4 0.00018 29.5 4.6 34 14-47 5-42 (348)
49 cd03816 GT1_ALG1_like This fam 70.7 6.1 0.00013 33.2 3.9 34 11-44 5-40 (415)
50 PF13477 Glyco_trans_4_2: Glyc 69.1 27 0.00058 23.9 6.5 50 12-73 2-51 (139)
51 cd02067 B12-binding B12 bindin 65.9 18 0.00039 24.7 4.9 42 11-52 1-44 (119)
52 cd03823 GT1_ExpE7_like This fa 64.9 13 0.00027 29.0 4.4 28 20-47 15-44 (359)
53 PRK10307 putative glycosyl tra 64.6 13 0.00028 30.7 4.7 22 24-45 21-42 (412)
54 cd01452 VWA_26S_proteasome_sub 64.3 41 0.00089 25.6 7.0 61 11-75 110-175 (187)
55 cd03817 GT1_UGDG_like This fam 64.2 12 0.00025 29.2 4.1 29 18-46 12-42 (374)
56 cd03818 GT1_ExpC_like This fam 63.7 14 0.00029 30.5 4.6 28 16-46 8-35 (396)
57 COG1484 DnaC DNA replication p 57.6 18 0.0004 28.6 4.2 45 11-55 107-153 (254)
58 cd04951 GT1_WbdM_like This fam 56.7 14 0.0003 29.2 3.4 29 16-44 7-38 (360)
59 cd03821 GT1_Bme6_like This fam 56.6 17 0.00037 28.2 3.9 28 20-47 14-43 (375)
60 COG2185 Sbm Methylmalonyl-CoA 55.9 20 0.00044 26.3 3.8 36 7-42 10-47 (143)
61 cd03800 GT1_Sucrose_synthase T 55.6 9 0.0002 30.8 2.2 23 24-46 27-49 (398)
62 cd03794 GT1_wbuB_like This fam 55.2 15 0.00033 28.6 3.4 28 20-47 14-43 (394)
63 cd03819 GT1_WavL_like This fam 54.8 18 0.00039 28.5 3.7 31 15-45 4-37 (355)
64 PF04127 DFP: DNA / pantothena 54.5 22 0.00047 27.0 3.9 31 15-45 23-53 (185)
65 COG0707 MurG UDP-N-acetylgluco 54.4 28 0.0006 29.2 4.9 54 12-75 3-59 (357)
66 cd03795 GT1_like_4 This family 54.2 27 0.00058 27.4 4.7 29 19-47 13-43 (357)
67 PRK14106 murD UDP-N-acetylmura 53.8 29 0.00063 29.2 5.1 35 7-44 3-37 (450)
68 PF09314 DUF1972: Domain of un 53.7 20 0.00043 27.3 3.6 79 21-116 17-102 (185)
69 cd03814 GT1_like_2 This family 53.7 15 0.00032 28.7 3.0 27 20-46 14-42 (364)
70 PRK07666 fabG 3-ketoacyl-(acyl 53.3 45 0.00099 25.0 5.7 38 5-44 3-40 (239)
71 COG0467 RAD55 RecA-superfamily 52.3 40 0.00087 26.3 5.3 104 11-117 25-135 (260)
72 cd03796 GT1_PIG-A_like This fa 52.3 19 0.0004 29.7 3.6 22 24-45 20-41 (398)
73 TIGR02964 xanthine_xdhC xanthi 51.0 35 0.00075 27.0 4.8 32 9-43 100-131 (246)
74 TIGR03449 mycothiol_MshA UDP-N 50.4 17 0.00036 29.8 3.0 23 24-46 26-48 (405)
75 cd02070 corrinoid_protein_B12- 50.1 52 0.0011 24.9 5.5 45 9-53 82-128 (201)
76 cd03802 GT1_AviGT4_like This f 49.9 24 0.00052 27.5 3.8 28 19-46 17-47 (335)
77 PRK08703 short chain dehydroge 49.7 45 0.00098 25.1 5.2 37 4-42 1-37 (239)
78 PRK12825 fabG 3-ketoacyl-(acyl 49.6 46 0.001 24.7 5.2 37 5-43 2-38 (249)
79 PRK11064 wecC UDP-N-acetyl-D-m 49.3 39 0.00085 28.7 5.1 33 8-43 2-34 (415)
80 COG1233 Phytoene dehydrogenase 48.5 33 0.00071 29.7 4.6 33 7-42 1-33 (487)
81 PF03853 YjeF_N: YjeF-related 48.3 56 0.0012 24.0 5.3 33 8-42 24-59 (169)
82 cd01635 Glycosyltransferase_GT 48.2 29 0.00063 24.9 3.7 24 19-42 12-37 (229)
83 PRK07326 short chain dehydroge 48.0 49 0.0011 24.7 5.1 36 6-43 3-38 (237)
84 PF12146 Hydrolase_4: Putative 48.0 40 0.00086 21.7 3.9 31 11-41 17-49 (79)
85 PF04244 DPRP: Deoxyribodipyri 47.9 25 0.00053 27.6 3.4 22 24-45 51-72 (224)
86 PLN02211 methyl indole-3-aceta 47.5 42 0.00091 26.4 4.8 42 2-43 10-53 (273)
87 cd03825 GT1_wcfI_like This fam 47.3 35 0.00076 26.8 4.3 36 11-46 2-41 (365)
88 PRK12746 short chain dehydroge 46.8 64 0.0014 24.4 5.6 37 4-42 1-37 (254)
89 cd02071 MM_CoA_mut_B12_BD meth 46.6 63 0.0014 22.3 5.1 43 11-53 1-45 (122)
90 TIGR02370 pyl_corrinoid methyl 46.5 75 0.0016 24.0 5.9 46 8-53 83-130 (197)
91 PF02780 Transketolase_C: Tran 46.0 54 0.0012 22.5 4.7 35 8-42 8-42 (124)
92 cd03811 GT1_WabH_like This fam 45.9 38 0.00083 25.8 4.3 29 19-47 11-41 (353)
93 PRK06194 hypothetical protein; 45.7 58 0.0013 25.2 5.3 38 4-43 1-38 (287)
94 PF00070 Pyr_redox: Pyridine n 45.5 39 0.00085 21.2 3.6 25 21-45 8-32 (80)
95 PTZ00318 NADH dehydrogenase-li 44.6 50 0.0011 27.8 5.1 39 5-46 6-44 (424)
96 KOG1209 1-Acyl dihydroxyaceton 43.9 36 0.00079 27.2 3.7 38 4-41 1-38 (289)
97 TIGR00421 ubiX_pad polyprenyl 43.3 49 0.0011 24.9 4.4 117 14-135 4-141 (181)
98 PRK12939 short chain dehydroge 43.1 75 0.0016 23.8 5.4 37 4-42 2-38 (250)
99 PF08444 Gly_acyl_tr_C: Aralky 42.7 32 0.0007 23.1 2.9 33 17-49 31-66 (89)
100 PRK05920 aromatic acid decarbo 42.6 1.6E+02 0.0034 22.8 10.7 125 11-135 5-159 (204)
101 PF02310 B12-binding: B12 bind 42.4 65 0.0014 21.6 4.6 41 11-51 2-44 (121)
102 PRK08305 spoVFB dipicolinate s 42.2 69 0.0015 24.6 5.0 124 9-138 5-156 (196)
103 PF13478 XdhC_C: XdhC Rossmann 42.2 22 0.00048 25.5 2.2 26 19-44 5-30 (136)
104 cd03798 GT1_wlbH_like This fam 42.2 50 0.0011 25.3 4.4 29 19-47 13-43 (377)
105 PRK07523 gluconate 5-dehydroge 41.9 75 0.0016 24.1 5.4 38 3-42 4-41 (255)
106 COG4229 Predicted enolase-phos 41.8 25 0.00055 27.2 2.5 44 101-150 114-157 (229)
107 PRK09135 pteridine reductase; 41.8 78 0.0017 23.6 5.4 34 7-42 4-37 (249)
108 PRK05335 tRNA (uracil-5-)-meth 40.9 50 0.0011 28.6 4.5 29 11-42 4-32 (436)
109 PRK05653 fabG 3-ketoacyl-(acyl 40.0 94 0.002 23.0 5.5 35 7-43 3-37 (246)
110 cd00861 ProRS_anticodon_short 39.8 85 0.0018 20.0 4.7 33 11-43 3-39 (94)
111 cd03801 GT1_YqgM_like This fam 39.4 57 0.0012 24.8 4.3 28 20-47 14-43 (374)
112 PRK06719 precorrin-2 dehydroge 39.3 61 0.0013 23.6 4.2 39 8-50 12-50 (157)
113 cd02069 methionine_synthase_B1 38.6 1.1E+02 0.0024 23.6 5.7 46 8-53 87-134 (213)
114 PF03721 UDPG_MGDP_dh_N: UDP-g 38.5 31 0.00068 25.9 2.6 25 19-43 7-31 (185)
115 PF01726 LexA_DNA_bind: LexA D 38.3 58 0.0012 20.3 3.4 35 93-136 23-57 (65)
116 PF00391 PEP-utilizers: PEP-ut 38.1 27 0.00059 22.4 2.0 22 92-113 39-60 (80)
117 PLN02946 cysteine-tRNA ligase 38.0 1.1E+02 0.0023 27.5 6.2 58 91-150 147-205 (557)
118 PRK00654 glgA glycogen synthas 37.9 38 0.00082 28.9 3.3 30 15-44 11-43 (466)
119 PRK09620 hypothetical protein; 37.8 56 0.0012 25.5 4.0 26 18-43 26-51 (229)
120 PRK07313 phosphopantothenoylcy 37.7 84 0.0018 23.6 4.9 118 11-135 3-145 (182)
121 PRK12935 acetoacetyl-CoA reduc 37.4 1.1E+02 0.0025 22.9 5.7 37 4-42 1-37 (247)
122 PRK13609 diacylglycerol glucos 37.2 66 0.0014 26.2 4.6 32 11-42 6-40 (380)
123 TIGR00715 precor6x_red precorr 37.2 1.8E+02 0.0038 23.2 6.9 24 24-47 12-35 (256)
124 COG1066 Sms Predicted ATP-depe 37.2 56 0.0012 28.4 4.1 38 12-50 96-135 (456)
125 PF12695 Abhydrolase_5: Alpha/ 36.6 90 0.0019 21.0 4.6 36 12-47 2-38 (145)
126 PRK08265 short chain dehydroge 36.1 1E+02 0.0022 23.6 5.3 37 4-42 1-37 (261)
127 PRK09361 radB DNA repair and r 35.9 96 0.0021 23.4 5.0 33 12-44 26-60 (225)
128 cd01124 KaiC KaiC is a circadi 35.8 1.3E+02 0.0027 21.7 5.5 41 12-52 2-44 (187)
129 PF13450 NAD_binding_8: NAD(P) 35.7 54 0.0012 20.3 3.0 20 24-43 8-27 (68)
130 PRK05973 replicative DNA helic 35.3 1E+02 0.0023 24.2 5.2 42 11-52 66-109 (237)
131 PRK08213 gluconate 5-dehydroge 35.1 1.1E+02 0.0023 23.3 5.2 39 3-43 6-44 (259)
132 PRK10751 molybdopterin-guanine 34.9 1.3E+02 0.0028 22.5 5.4 39 4-42 1-41 (173)
133 PF03796 DnaB_C: DnaB-like hel 34.8 1.3E+02 0.0028 23.3 5.7 40 11-50 21-63 (259)
134 PF08279 HTH_11: HTH domain; 34.8 50 0.0011 19.1 2.7 38 97-145 17-54 (55)
135 PRK08690 enoyl-(acyl carrier p 34.7 1.1E+02 0.0023 23.6 5.2 37 4-41 1-38 (261)
136 PRK13394 3-hydroxybutyrate deh 34.6 1.2E+02 0.0025 22.9 5.4 38 4-43 2-39 (262)
137 TIGR00521 coaBC_dfp phosphopan 34.6 1E+02 0.0022 26.2 5.3 38 6-43 182-233 (390)
138 PRK07236 hypothetical protein; 34.1 76 0.0017 26.1 4.5 35 4-42 1-36 (386)
139 PRK06124 gluconate 5-dehydroge 34.0 1.2E+02 0.0026 22.9 5.4 35 7-43 9-43 (256)
140 PF02441 Flavoprotein: Flavopr 33.8 82 0.0018 21.9 4.1 39 11-49 2-41 (129)
141 PF00289 CPSase_L_chain: Carba 33.7 29 0.00062 24.0 1.6 22 16-37 78-101 (110)
142 PRK05579 bifunctional phosphop 33.4 1E+02 0.0023 26.2 5.2 121 7-135 4-148 (399)
143 PRK06732 phosphopantothenate-- 32.8 94 0.002 24.1 4.6 32 12-43 17-48 (229)
144 PRK06398 aldose dehydrogenase; 32.6 1.3E+02 0.0028 23.1 5.3 37 4-42 1-37 (258)
145 PRK06500 short chain dehydroge 32.3 1.2E+02 0.0026 22.7 5.0 37 4-42 1-37 (249)
146 smart00851 MGS MGS-like domain 32.1 65 0.0014 20.9 3.1 26 24-51 2-27 (90)
147 PF14681 UPRTase: Uracil phosp 31.9 97 0.0021 23.6 4.5 54 9-72 121-181 (207)
148 PRK12936 3-ketoacyl-(acyl-carr 31.9 1.4E+02 0.0031 22.2 5.4 36 5-42 2-37 (245)
149 PF02142 MGS: MGS-like domain 31.9 49 0.0011 21.8 2.5 26 24-51 2-27 (95)
150 PF03807 F420_oxidored: NADP o 31.7 1.4E+02 0.003 19.0 4.7 26 19-44 6-34 (96)
151 PF13460 NAD_binding_10: NADH( 31.6 78 0.0017 22.6 3.8 26 19-44 6-31 (183)
152 PRK08264 short chain dehydroge 31.5 1.5E+02 0.0032 22.1 5.4 34 8-43 5-39 (238)
153 COG1058 CinA Predicted nucleot 31.4 1.6E+02 0.0035 23.6 5.7 69 24-111 23-92 (255)
154 PRK06997 enoyl-(acyl carrier p 31.1 1.3E+02 0.0028 23.2 5.2 36 5-41 2-38 (260)
155 cd00860 ThrRS_anticodon ThrRS 31.1 1.3E+02 0.0027 18.8 4.4 32 11-43 3-36 (91)
156 PRK12829 short chain dehydroge 31.1 81 0.0018 23.9 4.0 35 7-43 9-43 (264)
157 PRK09072 short chain dehydroge 30.9 1.3E+02 0.0029 22.9 5.2 33 9-43 5-37 (263)
158 PRK06179 short chain dehydroge 30.9 1.2E+02 0.0026 23.2 5.0 31 12-43 6-36 (270)
159 PRK12826 3-ketoacyl-(acyl-carr 30.9 1.4E+02 0.0031 22.2 5.3 25 19-43 14-38 (251)
160 PRK06249 2-dehydropantoate 2-r 30.3 1.2E+02 0.0026 24.4 5.0 36 7-45 3-38 (313)
161 cd03822 GT1_ecORF704_like This 30.2 85 0.0018 24.4 4.0 23 24-46 19-41 (366)
162 PRK06130 3-hydroxybutyryl-CoA 30.2 1.2E+02 0.0026 24.2 5.0 35 4-43 1-35 (311)
163 PRK07576 short chain dehydroge 30.0 1.4E+02 0.0031 22.9 5.2 35 6-42 6-40 (264)
164 COG1654 BirA Biotin operon rep 30.0 99 0.0021 20.2 3.6 45 91-146 15-59 (79)
165 PF03308 ArgK: ArgK protein; 29.6 44 0.00096 27.0 2.3 47 1-47 77-133 (266)
166 KOG3275 Zinc-binding protein o 29.2 1.1E+02 0.0024 21.8 3.9 40 1-41 42-100 (127)
167 PF12840 HTH_20: Helix-turn-he 29.0 1E+02 0.0022 18.4 3.4 30 98-137 27-56 (61)
168 COG1255 Uncharacterized protei 29.0 63 0.0014 23.1 2.7 20 24-43 25-44 (129)
169 PRK06935 2-deoxy-D-gluconate 3 28.9 2.4E+02 0.0051 21.4 6.3 26 19-44 23-48 (258)
170 PRK07774 short chain dehydroge 28.8 1.7E+02 0.0036 21.9 5.4 35 7-43 4-38 (250)
171 PRK05876 short chain dehydroge 28.6 1.6E+02 0.0034 23.0 5.3 37 4-42 1-37 (275)
172 PF03054 tRNA_Me_trans: tRNA m 28.6 89 0.0019 26.3 4.0 39 98-136 54-92 (356)
173 PRK05866 short chain dehydroge 28.3 1.8E+02 0.0038 23.0 5.6 24 19-42 48-71 (293)
174 TIGR00640 acid_CoA_mut_C methy 28.1 1.1E+02 0.0025 21.7 4.0 36 8-43 52-90 (132)
175 COG0537 Hit Diadenosine tetrap 27.5 1E+02 0.0022 22.0 3.7 22 2-23 28-49 (138)
176 PRK12742 oxidoreductase; Provi 27.3 1.8E+02 0.0039 21.5 5.3 36 5-42 2-37 (237)
177 PRK06182 short chain dehydroge 27.3 1.6E+02 0.0035 22.6 5.1 33 8-42 2-34 (273)
178 PRK12827 short chain dehydroge 27.2 1.8E+02 0.0038 21.6 5.2 34 7-42 4-37 (249)
179 PRK14099 glycogen synthase; Pr 27.0 1.4E+02 0.0029 25.9 5.0 38 7-44 1-46 (485)
180 PRK06077 fabG 3-ketoacyl-(acyl 26.8 2.2E+02 0.0049 21.2 5.8 34 7-42 4-37 (252)
181 PRK07067 sorbitol dehydrogenas 26.7 1.8E+02 0.004 21.9 5.3 24 19-42 14-37 (257)
182 PRK06371 translation initiatio 26.6 1.7E+02 0.0037 24.4 5.2 19 98-116 241-259 (329)
183 cd03812 GT1_CapH_like This fam 26.5 86 0.0019 24.6 3.5 34 14-47 5-41 (358)
184 TIGR00521 coaBC_dfp phosphopan 26.5 1.5E+02 0.0032 25.2 5.0 119 9-135 3-144 (390)
185 PRK02645 ppnK inorganic polyph 26.5 1.8E+02 0.0038 23.7 5.3 37 7-43 1-40 (305)
186 cd03807 GT1_WbnK_like This fam 26.3 1.4E+02 0.0031 22.8 4.7 29 18-46 10-40 (365)
187 PRK08589 short chain dehydroge 26.2 1.7E+02 0.0037 22.6 5.1 37 5-43 2-38 (272)
188 PRK09435 membrane ATPase/prote 26.1 92 0.002 25.9 3.6 45 3-47 106-160 (332)
189 PRK07231 fabG 3-ketoacyl-(acyl 25.9 1.8E+02 0.0039 21.7 5.1 26 18-43 12-37 (251)
190 PF01316 Arg_repressor: Argini 25.8 40 0.00086 21.5 1.1 19 25-43 23-41 (70)
191 COG4081 Uncharacterized protei 25.7 1.2E+02 0.0027 22.0 3.7 27 24-50 21-47 (148)
192 TIGR00137 gid_trmFO tRNA:m(5)U 25.5 78 0.0017 27.4 3.2 24 19-42 7-30 (433)
193 cd01120 RecA-like_NTPases RecA 25.2 2.3E+02 0.0049 19.2 5.3 40 11-50 1-42 (165)
194 cd03791 GT1_Glycogen_synthase_ 25.1 81 0.0018 26.5 3.2 22 24-45 22-43 (476)
195 PRK08939 primosomal protein Dn 24.9 1.2E+02 0.0027 24.6 4.1 44 10-53 157-202 (306)
196 TIGR03877 thermo_KaiC_1 KaiC d 24.8 2.1E+02 0.0046 21.9 5.3 42 11-52 23-66 (237)
197 PRK07577 short chain dehydroge 24.7 1.9E+02 0.0041 21.3 5.0 31 11-43 5-35 (234)
198 PLN02662 cinnamyl-alcohol dehy 24.6 1.1E+02 0.0023 24.2 3.7 26 18-43 11-36 (322)
199 cd05212 NAD_bind_m-THF_DH_Cycl 24.6 2E+02 0.0043 20.7 4.8 35 6-43 25-60 (140)
200 TIGR03385 CoA_CoA_reduc CoA-di 24.5 1.5E+02 0.0032 24.8 4.7 32 10-44 138-169 (427)
201 TIGR02700 flavo_MJ0208 archaeo 24.2 1.2E+02 0.0026 23.6 3.8 32 17-48 6-42 (234)
202 TIGR03087 stp1 sugar transfera 24.1 69 0.0015 26.3 2.6 30 15-45 8-40 (397)
203 PF04218 CENP-B_N: CENP-B N-te 24.1 50 0.0011 19.6 1.3 13 97-109 24-36 (53)
204 PRK07454 short chain dehydroge 24.0 2E+02 0.0044 21.4 5.0 31 12-43 8-38 (241)
205 TIGR02113 coaC_strep phosphopa 24.0 2E+02 0.0042 21.5 4.8 118 12-135 3-144 (177)
206 PRK06067 flagellar accessory p 24.0 2.7E+02 0.0059 21.1 5.8 42 11-52 27-70 (234)
207 PF01022 HTH_5: Bacterial regu 23.8 1.4E+02 0.0031 16.8 3.2 28 98-135 18-45 (47)
208 cd01079 NAD_bind_m-THF_DH NAD 23.8 1.7E+02 0.0037 22.6 4.5 33 6-41 59-92 (197)
209 COG3433 Aryl carrier domain [S 23.6 47 0.001 21.6 1.1 20 22-41 31-51 (74)
210 TIGR01007 eps_fam capsular exo 23.6 1.9E+02 0.0042 21.3 4.8 38 7-44 14-55 (204)
211 PRK13982 bifunctional SbtC-lik 23.6 2E+02 0.0043 25.3 5.3 118 9-135 70-212 (475)
212 cd03799 GT1_amsK_like This is 23.5 1.4E+02 0.003 23.3 4.1 28 18-45 10-38 (355)
213 PRK05562 precorrin-2 dehydroge 23.4 2.6E+02 0.0056 21.9 5.5 35 10-47 26-60 (223)
214 PRK10125 putative glycosyl tra 23.4 1.4E+02 0.003 25.1 4.3 28 16-43 11-38 (405)
215 PRK06029 3-octaprenyl-4-hydrox 23.4 1.8E+02 0.004 22.0 4.6 120 11-135 3-144 (185)
216 PRK06849 hypothetical protein; 23.1 1.8E+02 0.004 24.0 5.0 32 11-45 6-38 (389)
217 TIGR02472 sucr_P_syn_N sucrose 23.1 90 0.002 26.3 3.1 21 24-44 32-54 (439)
218 cd01421 IMPCH Inosine monophos 23.0 1.4E+02 0.0031 22.8 3.9 27 24-52 13-39 (187)
219 PRK07806 short chain dehydroge 22.7 2.4E+02 0.0052 21.1 5.2 35 6-42 3-37 (248)
220 PRK05557 fabG 3-ketoacyl-(acyl 22.7 2.5E+02 0.0053 20.7 5.2 25 19-43 13-37 (248)
221 PRK05565 fabG 3-ketoacyl-(acyl 22.7 2.3E+02 0.005 20.9 5.1 29 11-41 7-35 (247)
222 PRK06057 short chain dehydroge 22.6 2.2E+02 0.0047 21.5 5.0 36 6-43 4-39 (255)
223 PF06745 KaiC: KaiC; InterPro 22.4 2E+02 0.0044 21.6 4.7 43 11-53 21-66 (226)
224 PF09339 HTH_IclR: IclR helix- 22.4 1E+02 0.0023 17.7 2.5 28 98-135 21-48 (52)
225 PF08445 FR47: FR47-like prote 22.4 2.2E+02 0.0048 18.2 4.3 29 21-49 39-68 (86)
226 PF01591 6PF2K: 6-phosphofruct 22.4 1.9E+02 0.0042 22.5 4.6 41 9-49 12-54 (222)
227 PF01978 TrmB: Sugar-specific 22.4 95 0.0021 18.8 2.4 31 98-138 25-55 (68)
228 PLN02240 UDP-glucose 4-epimera 22.2 1.9E+02 0.0041 23.1 4.8 34 7-42 3-36 (352)
229 cd03809 GT1_mtfB_like This fam 22.1 1.3E+02 0.0027 23.4 3.7 23 24-46 21-43 (365)
230 KOG0023 Alcohol dehydrogenase, 22.1 2.3E+02 0.005 23.9 5.1 34 9-45 182-215 (360)
231 PRK08226 short chain dehydroge 22.0 2.7E+02 0.0059 21.0 5.4 37 5-43 2-38 (263)
232 TIGR02237 recomb_radB DNA repa 21.9 3.3E+02 0.0072 20.0 5.8 40 12-51 15-57 (209)
233 PF08323 Glyco_transf_5: Starc 21.9 1.1E+02 0.0024 23.8 3.2 30 16-45 11-43 (245)
234 PRK06914 short chain dehydroge 21.9 2.3E+02 0.005 21.7 5.1 25 19-43 11-35 (280)
235 KOG3199 Nicotinamide mononucle 21.9 1E+02 0.0022 24.3 2.9 35 4-38 1-43 (234)
236 TIGR02655 circ_KaiC circadian 21.9 2.3E+02 0.005 24.5 5.5 43 11-53 265-309 (484)
237 cd01122 GP4d_helicase GP4d_hel 21.8 2.6E+02 0.0057 21.6 5.4 40 11-50 32-74 (271)
238 PRK12921 2-dehydropantoate 2-r 21.6 1.8E+02 0.0039 22.9 4.5 27 19-45 7-33 (305)
239 PRK06180 short chain dehydroge 21.6 1.3E+02 0.0027 23.3 3.5 26 18-43 11-36 (277)
240 PRK06505 enoyl-(acyl carrier p 21.5 1.8E+02 0.0039 22.6 4.4 33 10-42 7-40 (271)
241 PRK12828 short chain dehydroge 21.5 2.4E+02 0.0051 20.7 4.9 25 19-43 15-39 (239)
242 PRK08416 7-alpha-hydroxysteroi 21.4 2.5E+02 0.0054 21.4 5.1 37 4-42 3-39 (260)
243 PRK07063 short chain dehydroge 21.4 2.7E+02 0.0058 21.1 5.3 36 5-42 3-38 (260)
244 PF00975 Thioesterase: Thioest 21.2 33 0.0007 25.6 0.1 30 12-41 68-97 (229)
245 PRK05808 3-hydroxybutyryl-CoA 21.2 2.1E+02 0.0045 22.5 4.7 30 11-43 5-34 (282)
246 COG0300 DltE Short-chain dehyd 21.2 95 0.0021 25.0 2.7 35 6-42 3-37 (265)
247 cd01076 NAD_bind_1_Glu_DH NAD( 21.1 2.7E+02 0.0059 21.6 5.2 35 6-43 28-62 (227)
248 smart00518 AP2Ec AP endonuclea 21.1 86 0.0019 24.4 2.5 23 94-116 85-107 (273)
249 PLN00016 RNA-binding protein; 21.0 1.5E+02 0.0034 24.3 4.1 34 11-44 54-89 (378)
250 PRK14619 NAD(P)H-dependent gly 20.9 2.8E+02 0.0062 22.2 5.5 31 11-44 6-36 (308)
251 cd00858 GlyRS_anticodon GlyRS 20.7 2.7E+02 0.0059 18.9 4.7 43 9-51 26-71 (121)
252 COG1158 Rho Transcription term 20.6 1.3E+02 0.0028 25.6 3.5 34 9-42 226-266 (422)
253 PRK07814 short chain dehydroge 20.6 2.8E+02 0.0061 21.1 5.3 38 4-43 5-42 (263)
254 COG1703 ArgK Putative periplas 20.4 1E+02 0.0022 25.7 2.7 46 2-47 100-155 (323)
255 TIGR02468 sucrsPsyn_pln sucros 20.4 1.1E+02 0.0024 29.6 3.3 26 21-46 196-225 (1050)
256 cd00984 DnaB_C DnaB helicase C 20.3 2.8E+02 0.0061 20.9 5.2 39 12-50 16-57 (242)
257 PRK05579 bifunctional phosphop 20.3 2.7E+02 0.0059 23.7 5.4 26 19-44 212-237 (399)
258 PRK14191 bifunctional 5,10-met 20.3 2.5E+02 0.0054 22.9 5.0 35 6-43 154-189 (285)
259 PF01266 DAO: FAD dependent ox 20.3 1.4E+02 0.0031 23.3 3.6 26 19-44 6-31 (358)
260 PF03446 NAD_binding_2: NAD bi 20.2 1.6E+02 0.0034 21.2 3.6 25 18-42 7-31 (163)
261 cd00738 HGTP_anticodon HGTP an 20.1 2.4E+02 0.0051 17.6 4.6 33 11-43 3-39 (94)
262 PRK06370 mercuric reductase; V 20.0 2.2E+02 0.0047 24.2 4.9 32 10-44 172-203 (463)
No 1
>PLN02670 transferase, transferring glycosyl groups
Probab=99.92 E-value=7.8e-25 Score=186.91 Aligned_cols=123 Identities=23% Similarity=0.350 Sum_probs=96.6
Q ss_pred CCCCCeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcC----CCCCCC
Q 048768 6 SVSYPYVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTIT----DRLPLN 79 (151)
Q Consensus 6 ~m~~~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp----d~lp~~ 79 (151)
.-+++|||++|||+|||+ ||+|||+|++||++|||++|+.|+.++.+..... .++|+++.+| ||+|++
T Consensus 3 ~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~------~~~i~~~~lp~p~~dglp~~ 76 (472)
T PLN02670 3 REEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQL------SSSITLVSFPLPSVPGLPSS 76 (472)
T ss_pred CCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccC------CCCeeEEECCCCccCCCCCC
Confidence 344579999999999999 9999999999999999999999987765321111 2359999998 678764
Q ss_pred CCcCccch-------h----------------h------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHHHHH
Q 048768 80 HPRISDKL-------H----------------E------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQII 130 (151)
Q Consensus 80 ~~~~~~~~-------~----------------~------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~ 130 (151)
... ..++ . + ++|+|++|+.+||+++|||+++||+++|++++++++.+.+.
T Consensus 77 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~ 155 (472)
T PLN02670 77 AES-STDVPYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLM 155 (472)
T ss_pred ccc-ccccchhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhh
Confidence 321 1111 0 0 29999999999999999999999999999999998776665
Q ss_pred hcCCc
Q 048768 131 DAGEL 135 (151)
Q Consensus 131 ~~g~~ 135 (151)
++|.+
T Consensus 156 ~~~~~ 160 (472)
T PLN02670 156 EGGDL 160 (472)
T ss_pred hcccC
Confidence 55543
No 2
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.92 E-value=1.3e-24 Score=184.81 Aligned_cols=116 Identities=26% Similarity=0.347 Sum_probs=93.6
Q ss_pred CCCeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcCCCCCCCCCcCcc
Q 048768 8 SYPYVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTITDRLPLNHPRISD 85 (151)
Q Consensus 8 ~~~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd~lp~~~~~~~~ 85 (151)
+++|||+||||+|||+ ||+|||+|++||++|||++|+.|+.+. . .. .++|+|..+|+|+|++......
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~--~-----~~---~~~i~~~~ip~glp~~~~~~~~ 75 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP--S-----DD---FTDFQFVTIPESLPESDFKNLG 75 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc--c-----cC---CCCeEEEeCCCCCCcccccccC
Confidence 4579999999999999 999999999999999999999986321 1 11 2469999999999874211100
Q ss_pred --ch--------h--------h------------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHHHHHhcC
Q 048768 86 --KL--------H--------E------------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQIIDAG 133 (151)
Q Consensus 86 --~~--------~--------~------------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~~~g 133 (151)
.+ . + ++|+|++|+.+||+++|||+|+|||++|++++++++++.+.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~ 153 (451)
T PLN02410 76 PIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANN 153 (451)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhcc
Confidence 00 0 0 29999999999999999999999999999999999988876654
No 3
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.92 E-value=1.9e-24 Score=184.80 Aligned_cols=117 Identities=24% Similarity=0.328 Sum_probs=91.5
Q ss_pred CCCCCCeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcC----CCCCC
Q 048768 5 NSVSYPYVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTIT----DRLPL 78 (151)
Q Consensus 5 ~~m~~~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp----d~lp~ 78 (151)
++..++|||++|||+|||+ ||||||+|+++|++|||++|+.|++++.+... . .++|+++.+| +++|+
T Consensus 5 ~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~---~~~i~~~~lp~P~~~~lPd 77 (477)
T PLN02863 5 NKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----K---HPSIETLVLPFPSHPSIPS 77 (477)
T ss_pred ccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----c---CCCeeEEeCCCCCcCCCCC
Confidence 4556789999999999999 99999999999999999999999987654311 1 2457877654 25554
Q ss_pred CCCcC---ccc----hh---------------h--------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHHH
Q 048768 79 NHPRI---SDK----LH---------------E--------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQ 128 (151)
Q Consensus 79 ~~~~~---~~~----~~---------------~--------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~ 128 (151)
+.... ..+ +. + ++|+|++|+.+||+++|||+++|||++|+++++|++++.
T Consensus 78 G~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~ 157 (477)
T PLN02863 78 GVENVKDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWR 157 (477)
T ss_pred CCcChhhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhh
Confidence 43210 001 00 1 299999999999999999999999999999999998764
No 4
>PLN02562 UDP-glycosyltransferase
Probab=99.91 E-value=2.9e-24 Score=182.46 Aligned_cols=119 Identities=27% Similarity=0.389 Sum_probs=95.4
Q ss_pred CCeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcCCCCCCCCCcCccc
Q 048768 9 YPYVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTITDRLPLNHPRISDK 86 (151)
Q Consensus 9 ~~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd~lp~~~~~~~~~ 86 (151)
++|||++|||+|||+ ||+|||+|+++|++||+++|+.|++++.+... . .++|+|+.+|++++++.......
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~----~---~~~i~~v~lp~g~~~~~~~~~~~ 78 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD----P---KLGITFMSISDGQDDDPPRDFFS 78 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC----C---CCCEEEEECCCCCCCCccccHHH
Confidence 469999999999999 99999999999999999999999876654311 1 23699999998876432110000
Q ss_pred --------hh--------h----------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHHHHHhcCC
Q 048768 87 --------LH--------E----------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQIIDAGE 134 (151)
Q Consensus 87 --------~~--------~----------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~~~g~ 134 (151)
+. + ++|+|++|+.+||+++|||+|+|||++|+++++++++|.+...|.
T Consensus 79 l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~ 152 (448)
T PLN02562 79 IENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGL 152 (448)
T ss_pred HHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccc
Confidence 00 0 199999999999999999999999999999999999988766554
No 5
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.91 E-value=2.3e-24 Score=183.40 Aligned_cols=115 Identities=23% Similarity=0.338 Sum_probs=90.8
Q ss_pred CCCCeEEEEcCCChhHH--HHHHHHHHHh-CCCEEEEEeCCCc-hhHHhhhccccccccCCCCCceEEEcCCCCCCCCCc
Q 048768 7 VSYPYVLIWPLAALGHV--MLKLAELLCN-AGVKITFLNTEEF-HDRLIRHRSDVFSRCINLPGFQFKTITDRLPLNHPR 82 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi--~l~Lak~La~-~G~~VT~v~t~~~-~~~~~~~~~~~~~~~~~~~~i~~~~lpd~lp~~~~~ 82 (151)
|.++|||++|||+|||+ |+||||+|++ +|++|||++|+.| ++++.+.. .. .++|+|+.+|||+|++...
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~----~~---~~~i~~~~i~dglp~g~~~ 73 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNH----NN---VENLSFLTFSDGFDDGVIS 73 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccC----CC---CCCEEEEEcCCCCCCcccc
Confidence 67789999999999999 9999999996 7999999999976 33322210 11 2469999999998875311
Q ss_pred Cccchh-------------------h-----------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHHH
Q 048768 83 ISDKLH-------------------E-----------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQ 128 (151)
Q Consensus 83 ~~~~~~-------------------~-----------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~ 128 (151)
...++. + ++|+|++|+.+||+++|||+++|||++|++++++++++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~ 149 (455)
T PLN02152 74 NTDDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST 149 (455)
T ss_pred ccccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc
Confidence 111110 1 199999999999999999999999999999999988764
No 6
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.91 E-value=3.5e-24 Score=181.98 Aligned_cols=107 Identities=21% Similarity=0.299 Sum_probs=87.3
Q ss_pred CeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcCCCCCCCCCcCccch
Q 048768 10 PYVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTITDRLPLNHPRISDKL 87 (151)
Q Consensus 10 ~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd~lp~~~~~~~~~~ 87 (151)
+|||++|||+|||+ ||||||+|+++|++|||++|+.|.+++... . .++|+|+.+|||+|++......++
T Consensus 6 ~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~---~~~i~~~~ipdglp~~~~~~~~~~ 76 (449)
T PLN02173 6 GHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------P---SSPISIATISDGYDQGGFSSAGSV 76 (449)
T ss_pred cEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------C---CCCEEEEEcCCCCCCcccccccCH
Confidence 79999999999999 999999999999999999999988765321 0 236999999999987321111111
Q ss_pred h-------------------h-----------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHh
Q 048768 88 H-------------------E-----------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYC 125 (151)
Q Consensus 88 ~-------------------~-----------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~ 125 (151)
. + ++|+|++|+.+||+++|||+|+|||++|++++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~ 144 (449)
T PLN02173 77 PEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL 144 (449)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh
Confidence 0 1 199999999999999999999999999999877764
No 7
>PLN00164 glucosyltransferase; Provisional
Probab=99.91 E-value=6.9e-24 Score=181.54 Aligned_cols=121 Identities=17% Similarity=0.225 Sum_probs=91.1
Q ss_pred CCCCeEEEEcCCChhHH--HHHHHHHHHhCC----CEEEEEeCCCchh----HHhhhccccccccCCCCCceEEEcCCCC
Q 048768 7 VSYPYVLIWPLAALGHV--MLKLAELLCNAG----VKITFLNTEEFHD----RLIRHRSDVFSRCINLPGFQFKTITDRL 76 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi--~l~Lak~La~~G----~~VT~v~t~~~~~----~~~~~~~~~~~~~~~~~~i~~~~lpd~l 76 (151)
|.++|||++|||+|||+ ||+|||+|++|| ++|||++|+.+.. ++.+........ .++|+|+++|++.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~lp~~~ 77 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAAS---GLDIRFHHLPAVE 77 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccC---CCCEEEEECCCCC
Confidence 78999999999999999 999999999996 8999999987632 333221110011 2269999999764
Q ss_pred CCCCCcCccchh----------------h--------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHHHHH
Q 048768 77 PLNHPRISDKLH----------------E--------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQII 130 (151)
Q Consensus 77 p~~~~~~~~~~~----------------~--------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~ 130 (151)
++.......++. + ++|+|++|+.+||+++|||++.|||++|+++++++|+|.+.
T Consensus 78 ~p~~~e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 78 PPTDAAGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred CCCccccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 322111111100 1 29999999999999999999999999999999999998753
No 8
>PLN02534 UDP-glycosyltransferase
Probab=99.90 E-value=2.4e-23 Score=178.54 Aligned_cols=119 Identities=19% Similarity=0.268 Sum_probs=91.4
Q ss_pred CCCCC-CeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcC-----CCC
Q 048768 5 NSVSY-PYVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTIT-----DRL 76 (151)
Q Consensus 5 ~~m~~-~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp-----d~l 76 (151)
++|.+ +|||++|||+|||+ ||+|||+|++||++|||++|+.|+.++.+........ ...|+|+.+| ||+
T Consensus 3 ~~~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~---~~~i~~~~lp~p~~~dgl 79 (491)
T PLN02534 3 VSKAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARES---GLPIRLVQIPFPCKEVGL 79 (491)
T ss_pred cccCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhcccc---CCCeEEEEcCCCCccCCC
Confidence 45664 69999999999999 9999999999999999999999987665432210000 1249999998 688
Q ss_pred CCCCCcCc--c--chh-------------------h--------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHh
Q 048768 77 PLNHPRIS--D--KLH-------------------E--------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYC 125 (151)
Q Consensus 77 p~~~~~~~--~--~~~-------------------~--------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~ 125 (151)
|++..... . ++. + ++|+|++|+.+||+++|||+|+|||++|++++++++
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~ 159 (491)
T PLN02534 80 PIGCENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHN 159 (491)
T ss_pred CCCccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHH
Confidence 76532100 0 100 0 199999999999999999999999999999988765
Q ss_pred H
Q 048768 126 I 126 (151)
Q Consensus 126 ~ 126 (151)
+
T Consensus 160 ~ 160 (491)
T PLN02534 160 I 160 (491)
T ss_pred H
Confidence 4
No 9
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.90 E-value=2.5e-23 Score=178.03 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=90.8
Q ss_pred CCCeEEEEcCCChhHH--HHHHHHHHH-hCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcCC----CCCCCC
Q 048768 8 SYPYVLIWPLAALGHV--MLKLAELLC-NAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTITD----RLPLNH 80 (151)
Q Consensus 8 ~~~hvv~vP~p~~GHi--~l~Lak~La-~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd----~lp~~~ 80 (151)
.++|||++|||+|||+ |++|||+|+ ++|++|||++|+.|.+++.+.... .++|+++.+|+ ++|+..
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~-------~~~i~~~~lp~p~~~glp~~~ 76 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLN-------STGVDIVGLPSPDISGLVDPS 76 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcccc-------CCCceEEECCCccccCCCCCC
Confidence 4689999999999999 999999998 799999999999998765333111 23689999985 665221
Q ss_pred CcCccchh---------------h--------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHHHHH
Q 048768 81 PRISDKLH---------------E--------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQII 130 (151)
Q Consensus 81 ~~~~~~~~---------------~--------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~ 130 (151)
......+. + ++|+|++|+.+||+++|||+|+|||++|+++++++|+|.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 149 (481)
T PLN02992 77 AHVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLD 149 (481)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhc
Confidence 11100100 1 29999999999999999999999999999999999888653
No 10
>PLN02555 limonoid glucosyltransferase
Probab=99.89 E-value=3.8e-23 Score=176.88 Aligned_cols=119 Identities=25% Similarity=0.379 Sum_probs=90.7
Q ss_pred CCeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhhc--cccc-cccCCCCCceEEEcCCCCCCCCCcC
Q 048768 9 YPYVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRHR--SDVF-SRCINLPGFQFKTITDRLPLNHPRI 83 (151)
Q Consensus 9 ~~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~--~~~~-~~~~~~~~i~~~~lpd~lp~~~~~~ 83 (151)
++|||++|||+|||+ ||+|||+|++||++|||++|+.|+.++.+.. .+.. ... ....++|..+|||+|++....
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~-~~~~i~~~~~pdglp~~~~~~ 85 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPV-GDGFIRFEFFEDGWAEDDPRR 85 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccC-CCCeEEEeeCCCCCCCCcccc
Confidence 589999999999999 9999999999999999999999887664311 0000 000 012378888899887653211
Q ss_pred --ccchh----------------h-----------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHHH
Q 048768 84 --SDKLH----------------E-----------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQ 128 (151)
Q Consensus 84 --~~~~~----------------~-----------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~ 128 (151)
...+. + ++|+|++|+.+||+++|||+++|||++|++++++++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~ 159 (480)
T PLN02555 86 QDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYH 159 (480)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhh
Confidence 00000 0 199999999999999999999999999999999998853
No 11
>PLN02207 UDP-glycosyltransferase
Probab=99.89 E-value=5.9e-23 Score=175.22 Aligned_cols=121 Identities=18% Similarity=0.191 Sum_probs=90.5
Q ss_pred CCCCeEEEEcCCChhHH--HHHHHHHHHhCC--CEEEEEeCCCchh-HHhhhccccccccCCCCCceEEEcCCCCC--C-
Q 048768 7 VSYPYVLIWPLAALGHV--MLKLAELLCNAG--VKITFLNTEEFHD-RLIRHRSDVFSRCINLPGFQFKTITDRLP--L- 78 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi--~l~Lak~La~~G--~~VT~v~t~~~~~-~~~~~~~~~~~~~~~~~~i~~~~lpd~lp--~- 78 (151)
|+++|||++|||+|||+ |++|||+|+++| ++|||++|+.++. .+.+........ .++|+|+.+||+.+ +
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~---~~~i~~~~lp~~~~~~~~ 77 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASS---QPFVRFIDVPELEEKPTL 77 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCC---CCCeEEEEeCCCCCCCcc
Confidence 77899999999999999 999999999998 9999999998863 222111110011 34699999996432 1
Q ss_pred CCCcCcc--------ch-------h-----h-----------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHH
Q 048768 79 NHPRISD--------KL-------H-----E-----------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIP 127 (151)
Q Consensus 79 ~~~~~~~--------~~-------~-----~-----------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p 127 (151)
+...... .+ . + ++|+|++|+.+||+++|||+++|||++|++++++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~ 157 (468)
T PLN02207 78 GGTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLA 157 (468)
T ss_pred ccccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhh
Confidence 1100000 00 0 0 19999999999999999999999999999999999988
Q ss_pred HHH
Q 048768 128 QII 130 (151)
Q Consensus 128 ~l~ 130 (151)
.+.
T Consensus 158 ~~~ 160 (468)
T PLN02207 158 DRH 160 (468)
T ss_pred hcc
Confidence 654
No 12
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.89 E-value=6.7e-23 Score=175.45 Aligned_cols=123 Identities=19% Similarity=0.209 Sum_probs=91.4
Q ss_pred CCeEEEEcCCChhHH--HHHHHHHHHhCC--CEEEEEeCCCchhHHhh-hc-cccccccCCCCCceEEEcCCCCCCCCCc
Q 048768 9 YPYVLIWPLAALGHV--MLKLAELLCNAG--VKITFLNTEEFHDRLIR-HR-SDVFSRCINLPGFQFKTITDRLPLNHPR 82 (151)
Q Consensus 9 ~~hvv~vP~p~~GHi--~l~Lak~La~~G--~~VT~v~t~~~~~~~~~-~~-~~~~~~~~~~~~i~~~~lpd~lp~~~~~ 82 (151)
|.|||++|||+|||+ ||||||+|++|| ++|||++|+.|+.++.+ .. ...... ...++|+|+.+|++.+++...
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~~~~~~ 80 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSA-SSEDRLRYEVISAGDQPTTED 80 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhccc-CCCCCeEEEEcCCCCCCcccc
Confidence 579999999999999 999999999998 99999999998764321 10 010000 002369999999876432100
Q ss_pred C-c---------------cchh-h------------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHHHHHhc
Q 048768 83 I-S---------------DKLH-E------------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQIIDA 132 (151)
Q Consensus 83 ~-~---------------~~~~-~------------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~~~ 132 (151)
. . .++. + ++|+|++|+.+||+++|||+|+|||++|+++++++|+|.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~ 159 (481)
T PLN02554 81 PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDE 159 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhccc
Confidence 0 0 0000 0 2999999999999999999999999999999999999886543
No 13
>PLN03004 UDP-glycosyltransferase
Probab=99.89 E-value=8.4e-23 Score=173.65 Aligned_cols=120 Identities=17% Similarity=0.337 Sum_probs=88.4
Q ss_pred CCCCeEEEEcCCChhHH--HHHHHHHHHhCC----CEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcCCCCCC-C
Q 048768 7 VSYPYVLIWPLAALGHV--MLKLAELLCNAG----VKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTITDRLPL-N 79 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi--~l~Lak~La~~G----~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd~lp~-~ 79 (151)
|++.|||++|||+|||+ ||+|||+|++|| ++||+++|+.|...+.+........ .++|+|+.+|++.+. +
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~lp~~~~~~~ 77 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSS---FPSITFHHLPAVTPYSS 77 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCC---CCCeEEEEcCCCCCCCC
Confidence 77889999999999999 999999999998 5555567766654432211110011 346999999987642 2
Q ss_pred CCcCccc---hh----------------h----------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHHHH
Q 048768 80 HPRISDK---LH----------------E----------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQI 129 (151)
Q Consensus 80 ~~~~~~~---~~----------------~----------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l 129 (151)
......+ .. + ++|+|++|+.+||+++|||+|+|||++|+++++|+|+|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~ 156 (451)
T PLN03004 78 SSTSRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTI 156 (451)
T ss_pred ccccccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhc
Confidence 1111100 00 1 2999999999999999999999999999999999998864
No 14
>PLN02210 UDP-glucosyl transferase
Probab=99.88 E-value=2.2e-22 Score=171.30 Aligned_cols=112 Identities=27% Similarity=0.317 Sum_probs=89.7
Q ss_pred CCeEEEEcCCChhHH--HHHHHHH--HHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcCCCCCCCCCcCc
Q 048768 9 YPYVLIWPLAALGHV--MLKLAEL--LCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTITDRLPLNHPRIS 84 (151)
Q Consensus 9 ~~hvv~vP~p~~GHi--~l~Lak~--La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd~lp~~~~~~~ 84 (151)
++|||++|||+|||+ ||+|||+ |++||++|||++|+.|++++.+. .. . .+.+++..+|+|+|++.....
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~-~~---~---~~~~~~~~~~~glp~~~~~~~ 80 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTV-EK---P---RRPVDLVFFSDGLPKDDPRAP 80 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccc-cC---C---CCceEEEECCCCCCCCcccCH
Confidence 469999999999999 9999999 55899999999999998765321 11 1 245888888998887542211
Q ss_pred cchh------------h----------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHH
Q 048768 85 DKLH------------E----------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIP 127 (151)
Q Consensus 85 ~~~~------------~----------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p 127 (151)
..+. + ++|++++|+.+||+++|||+++||+++|++++++++++
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~ 145 (456)
T PLN02210 81 ETLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYY 145 (456)
T ss_pred HHHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhh
Confidence 1110 0 29999999999999999999999999999999998765
No 15
>PLN00414 glycosyltransferase family protein
Probab=99.88 E-value=3.9e-22 Score=169.43 Aligned_cols=108 Identities=20% Similarity=0.370 Sum_probs=85.5
Q ss_pred CCeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEc--C--CCCCCCCCc
Q 048768 9 YPYVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTI--T--DRLPLNHPR 82 (151)
Q Consensus 9 ~~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~l--p--d~lp~~~~~ 82 (151)
++|||++|||+|||+ |++|||+|+++|++|||++|+.++.++.+... . .++|+|+.+ | +|+|++..
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~---~~~i~~~~i~lP~~dGLP~g~e- 75 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----F---PDSIVFEPLTLPPVDGLPFGAE- 75 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----C---CCceEEEEecCCCcCCCCCccc-
Confidence 579999999999999 99999999999999999999998876543211 0 235888655 4 68876532
Q ss_pred Cccch--------h-----------h----------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHh
Q 048768 83 ISDKL--------H-----------E----------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYC 125 (151)
Q Consensus 83 ~~~~~--------~-----------~----------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~ 125 (151)
...++ . + ++|+ ++|+.+||+++|||+++|||++|++++++++
T Consensus 76 ~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~ 146 (446)
T PLN00414 76 TASDLPNSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA 146 (446)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC
Confidence 11111 0 0 2995 8999999999999999999999999999987
No 16
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.87 E-value=1e-21 Score=167.94 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=86.5
Q ss_pred CCCCeEEEEcCCChhHH--HHHHHHHHHhCCC---EEEEEeCCCchh-HHhhhccccccccCCCCCceEEEcCCCC-CCC
Q 048768 7 VSYPYVLIWPLAALGHV--MLKLAELLCNAGV---KITFLNTEEFHD-RLIRHRSDVFSRCINLPGFQFKTITDRL-PLN 79 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi--~l~Lak~La~~G~---~VT~v~t~~~~~-~~~~~~~~~~~~~~~~~~i~~~~lpd~l-p~~ 79 (151)
|+++|||++|||+|||+ ||||||+|++||. .||+++|+.+.. ............ .++|+|+.||++. |++
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~---~~~i~~~~lp~~~~p~~ 77 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIAS---EPRIRLVTLPEVQDPPP 77 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccC---CCCeEEEECCCCCCCcc
Confidence 67899999999999999 9999999999993 578887765532 111111100011 3469999999754 221
Q ss_pred CC---cCcc-chh---------------------------h----hcccccchHHHHHHHhCCceEEEeccchHHHHHHH
Q 048768 80 HP---RISD-KLH---------------------------E----YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYY 124 (151)
Q Consensus 80 ~~---~~~~-~~~---------------------------~----l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~ 124 (151)
.. .... .+. . ++|+|++|+.+||+++|||+++|||++|+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~ 157 (475)
T PLN02167 78 MELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMK 157 (475)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 10 0000 000 0 19999999999999999999999999999999999
Q ss_pred hHHHH
Q 048768 125 CIPQI 129 (151)
Q Consensus 125 ~~p~l 129 (151)
++|..
T Consensus 158 ~~~~~ 162 (475)
T PLN02167 158 YLPER 162 (475)
T ss_pred HHHHh
Confidence 98864
No 17
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.86 E-value=2.4e-21 Score=164.97 Aligned_cols=120 Identities=23% Similarity=0.364 Sum_probs=96.8
Q ss_pred CCCCeEEEEcCCChhHH--HHHHHHHHHhC--CCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcCCCCCCCCCc
Q 048768 7 VSYPYVLIWPLAALGHV--MLKLAELLCNA--GVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTITDRLPLNHPR 82 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi--~l~Lak~La~~--G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd~lp~~~~~ 82 (151)
..++|||++|||+|||+ ||+||++|+++ |++|||++|+.+.+++.+... .++++|+.+|+++|++...
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~--------~~gi~fv~lp~~~p~~~~~ 79 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK--------PDNIRFATIPNVIPSELVR 79 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC--------CCCEEEEECCCCCCCcccc
Confidence 45689999999999999 99999999999 999999999999877654311 2369999999877654211
Q ss_pred Cccchh-------------------h--------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHHHHHhcCCc
Q 048768 83 ISDKLH-------------------E--------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQIIDAGEL 135 (151)
Q Consensus 83 ~~~~~~-------------------~--------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~~~g~~ 135 (151)
. .+.. + ++|++++|+.++|+++|||+|.||+++|++++.+++++.+.+.+..
T Consensus 80 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~ 158 (459)
T PLN02448 80 A-ADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHF 158 (459)
T ss_pred c-cCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCC
Confidence 1 1110 1 2999999999999999999999999999999999999877654443
No 18
>PLN03015 UDP-glucosyl transferase
Probab=99.86 E-value=2e-21 Score=165.80 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=89.3
Q ss_pred CCCCeEEEEcCCChhHH--HHHHHHHHHhC-CCEEEEEeCCCchhHHhhhc-cccccccCCCCCceEEEcCCCCCCCC-C
Q 048768 7 VSYPYVLIWPLAALGHV--MLKLAELLCNA-GVKITFLNTEEFHDRLIRHR-SDVFSRCINLPGFQFKTITDRLPLNH-P 81 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi--~l~Lak~La~~-G~~VT~v~t~~~~~~~~~~~-~~~~~~~~~~~~i~~~~lpd~lp~~~-~ 81 (151)
|.++|||++|||+|||+ |++|||+|+++ |++||+++|+.++.++.... ...... .++|+++.+|++..++. .
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~---~~~i~~~~lp~~~~~~l~~ 77 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAA---RTTCQITEIPSVDVDNLVE 77 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccC---CCceEEEECCCCccccCCC
Confidence 67889999999999999 99999999987 99999999998876542111 111000 12599999995322111 0
Q ss_pred ---cCccchh---------------h--------hcccccchHHHHHHHhCCc-eEEEeccchHHHHHHHhHHHHH
Q 048768 82 ---RISDKLH---------------E--------YWNGFMSFAIDVARVVGIS-IFYFRTIRACAFWAYYCIPQII 130 (151)
Q Consensus 82 ---~~~~~~~---------------~--------l~D~~~~w~~~vA~~lgIP-~v~f~t~~A~~~~~~~~~p~l~ 130 (151)
.....+. + ++|+|++|+.+||+++||| +++|++++|+.+++++|+|.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~ 153 (470)
T PLN03015 78 PDATIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLD 153 (470)
T ss_pred CCccHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhh
Confidence 0000010 1 2999999999999999999 6999999999999999998753
No 19
>PLN02764 glycosyltransferase family protein
Probab=99.86 E-value=1.6e-21 Score=165.75 Aligned_cols=112 Identities=23% Similarity=0.309 Sum_probs=86.2
Q ss_pred CCCeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcC--CCCCCCCCcC
Q 048768 8 SYPYVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTIT--DRLPLNHPRI 83 (151)
Q Consensus 8 ~~~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp--d~lp~~~~~~ 83 (151)
.++|||++|||+|||+ |++|||+|++||++|||++|+.|.+++.+. ... .. ...++++++| ||+|++....
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~-~~~-~~---~~~v~~~~~p~~~glp~g~e~~ 78 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL-NLF-PH---NIVFRSVTVPHVDGLPVGTETV 78 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc-ccC-CC---CceEEEEECCCcCCCCCccccc
Confidence 4689999999999999 999999999999999999999998765432 100 10 1237778888 7887653210
Q ss_pred ---ccc----hh---------------h------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHh
Q 048768 84 ---SDK----LH---------------E------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYC 125 (151)
Q Consensus 84 ---~~~----~~---------------~------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~ 125 (151)
..+ +. + ++|+ ++|+.+||+++|||+|.|||++|++++++++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~ 147 (453)
T PLN02764 79 SEIPVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV 147 (453)
T ss_pred ccCChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc
Confidence 000 10 0 1995 9999999999999999999999999999874
No 20
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.85 E-value=8e-21 Score=162.70 Aligned_cols=123 Identities=24% Similarity=0.302 Sum_probs=87.6
Q ss_pred CCCCCCCeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCC-CCceEEEcC---CCCC
Q 048768 4 RNSVSYPYVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINL-PGFQFKTIT---DRLP 77 (151)
Q Consensus 4 ~~~m~~~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~-~~i~~~~lp---d~lp 77 (151)
||+. ++|||++|||+|||+ ||+|||+|++||++|||++|+.+.+++.+............ .++....+| +++|
T Consensus 1 ~~~~-~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP 79 (482)
T PLN03007 1 MNHE-KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLP 79 (482)
T ss_pred CCCC-CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCC
Confidence 3444 479999999999999 99999999999999999999999876654321100000000 135555666 4676
Q ss_pred CCCCcC----------ccchh---------------h----------hcccccchHHHHHHHhCCceEEEeccchHHHHH
Q 048768 78 LNHPRI----------SDKLH---------------E----------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWA 122 (151)
Q Consensus 78 ~~~~~~----------~~~~~---------------~----------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~ 122 (151)
++.... ..++. + ++|++++|+.+||+++|||+|+|||++|+++++
T Consensus 80 ~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~ 159 (482)
T PLN03007 80 EGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCA 159 (482)
T ss_pred CCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHH
Confidence 542110 00100 0 199999999999999999999999999999988
Q ss_pred HHhHH
Q 048768 123 YYCIP 127 (151)
Q Consensus 123 ~~~~p 127 (151)
++++.
T Consensus 160 ~~~~~ 164 (482)
T PLN03007 160 SYCIR 164 (482)
T ss_pred HHHHH
Confidence 87654
No 21
>PLN02208 glycosyltransferase family protein
Probab=99.85 E-value=7.5e-21 Score=161.43 Aligned_cols=111 Identities=21% Similarity=0.342 Sum_probs=83.8
Q ss_pred CCeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEc--C--CCCCCCCCc
Q 048768 9 YPYVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTI--T--DRLPLNHPR 82 (151)
Q Consensus 9 ~~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~l--p--d~lp~~~~~ 82 (151)
++|||++|||+|||+ |++|||+|++||++|||++|+.+..++.+.. . . .+++++..+ | +++|++...
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~-a---~---~~~i~~~~l~~p~~dgLp~g~~~ 76 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN-L---F---PDSIVFHPLTIPPVNGLPAGAET 76 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc-C---C---CCceEEEEeCCCCccCCCCCccc
Confidence 579999999999999 9999999999999999999998877654321 1 0 124667655 3 577765321
Q ss_pred Cc---cchh---------------h----------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHHH
Q 048768 83 IS---DKLH---------------E----------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQ 128 (151)
Q Consensus 83 ~~---~~~~---------------~----------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~ 128 (151)
.. .++. + ++| +++|+.+||+++|||+++|||++|++++ ++|++.
T Consensus 77 ~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~ 148 (442)
T PLN02208 77 TSDIPISMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG 148 (442)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc
Confidence 10 0100 0 299 6899999999999999999999999875 777653
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.96 E-value=1e-09 Score=90.94 Aligned_cols=96 Identities=19% Similarity=0.152 Sum_probs=71.3
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcCCCCCCC--C-C----
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTITDRLPLN--H-P---- 81 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd~lp~~--~-~---- 81 (151)
||+++++|++||+ ++.+|+.|.++|++|||++++.....+.+ .+++|..+++..+.. . .
T Consensus 2 rIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~------------~G~~~~~~~~~~~~~~~~~~~~~~ 69 (401)
T cd03784 2 RVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA------------AGLEFVPVGGDPDELLASPERNAG 69 (401)
T ss_pred eEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH------------cCCceeeCCCCHHHHHhhhhhccc
Confidence 7999999999999 99999999999999999999876554432 257777777532210 0 0
Q ss_pred ------cCccchh-----------------------h--hcccccchHHHHHHHhCCceEEEeccchH
Q 048768 82 ------RISDKLH-----------------------E--YWNGFMSFAIDVARVVGISIFYFRTIRAC 118 (151)
Q Consensus 82 ------~~~~~~~-----------------------~--l~D~~~~w~~~vA~~lgIP~v~f~t~~A~ 118 (151)
....... + ++|.++.|+..+|+++|||.+.+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~ 137 (401)
T cd03784 70 LLLLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDT 137 (401)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCC
Confidence 0000000 0 19999999999999999999999987743
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.84 E-value=9.4e-09 Score=85.30 Aligned_cols=90 Identities=23% Similarity=0.292 Sum_probs=66.4
Q ss_pred EcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcCCCCCCC-CC-c----Cccc
Q 048768 15 WPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTITDRLPLN-HP-R----ISDK 86 (151)
Q Consensus 15 vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd~lp~~-~~-~----~~~~ 86 (151)
+.+|++||+ ++.||++|.++|++||+++++.+.+.+.+. ++.++.+|+..+.. .. . ...+
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~------------G~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA------------GAEFVLYGSALPPPDNPPENTEEEPID 68 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc------------CCEEEecCCcCccccccccccCcchHH
Confidence 468999999 999999999999999999998888765432 57787777543321 00 0 0000
Q ss_pred hh-----------------------h--hcccccchHHHHHHHhCCceEEEeccc
Q 048768 87 LH-----------------------E--YWNGFMSFAIDVARVVGISIFYFRTIR 116 (151)
Q Consensus 87 ~~-----------------------~--l~D~~~~w~~~vA~~lgIP~v~f~t~~ 116 (151)
.. + ++|.++.|+..+|+++|||++.+.+..
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 69 IIEKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhh
Confidence 00 1 189888999999999999999987543
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=98.66 E-value=1e-08 Score=87.28 Aligned_cols=121 Identities=24% Similarity=0.250 Sum_probs=81.2
Q ss_pred CCeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcCCCCCCCCCcC---
Q 048768 9 YPYVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTITDRLPLNHPRI--- 83 (151)
Q Consensus 9 ~~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd~lp~~~~~~--- 83 (151)
++|++++|+|++||+ ++++|++|+.+|++||++++..+.....................++...+++++.+....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 689999999999999 999999999999999999998877654321100000000011233333334444332100
Q ss_pred -c---cchh----------------------h--hcccccchHHHHHHHhC-CceEEEeccchHHHHHHHhHHHH
Q 048768 84 -S---DKLH----------------------E--YWNGFMSFAIDVARVVG-ISIFYFRTIRACAFWAYYCIPQI 129 (151)
Q Consensus 84 -~---~~~~----------------------~--l~D~~~~w~~~vA~~lg-IP~v~f~t~~A~~~~~~~~~p~l 129 (151)
. .... . ++|.|+.|...+|.+.+ |+..+|++.++...++....+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~ 159 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS 159 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc
Confidence 0 0000 0 18999999999998886 99999999999999888876654
No 25
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=98.28 E-value=5.3e-06 Score=58.93 Aligned_cols=94 Identities=27% Similarity=0.327 Sum_probs=63.5
Q ss_pred EEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcCCC--CCCCC-C-c---
Q 048768 12 VLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTITDR--LPLNH-P-R--- 82 (151)
Q Consensus 12 vv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd~--lp~~~-~-~--- 82 (151)
|++...+..||+ ++.|++.|.++|++|++.+.+...+.+.+ .+++|+.++.+ ++... . .
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~------------~Gl~~~~~~~~~~~~~~~~~~~~~~ 68 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA------------AGLEFVPIPGDSRLPRSLEPLANLR 68 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH------------TT-EEEESSSCGGGGHHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc------------cCceEEEecCCcCcCcccchhhhhh
Confidence 688899999999 99999999999999999988887766532 26899988754 11100 0 0
Q ss_pred Cccch----h-----------h--------------hcccccchHHHHHHHhCCceEEEeccch
Q 048768 83 ISDKL----H-----------E--------------YWNGFMSFAIDVARVVGISIFYFRTIRA 117 (151)
Q Consensus 83 ~~~~~----~-----------~--------------l~D~~~~w~~~vA~~lgIP~v~f~t~~A 117 (151)
..... . + +.+.....+.-+|+++|||.+.....+-
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 69 RLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred hHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 00000 0 0 0445556788999999999998776553
No 26
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.14 E-value=0.00046 Score=59.03 Aligned_cols=108 Identities=24% Similarity=0.280 Sum_probs=51.8
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcCCCCCCCCCc-Ccc--
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTITDRLPLNHPR-ISD-- 85 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd~lp~~~~~-~~~-- 85 (151)
+|+++|+ +.+|. |..+++.|++||++||++++..+. .+... . ...++++.++++.+..... ...
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS------K---PSNIRFETYPDPYPEEEFEEIFPEF 70 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T---------------S-CCEEEE-----TT------TTH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc------c---ccceeeEEEcCCcchHHHhhhhHHH
Confidence 5888985 78999 999999999999999999764321 11111 0 2357787777554332110 000
Q ss_pred ------------chh----------h---------hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHHHHH
Q 048768 86 ------------KLH----------E---------YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQII 130 (151)
Q Consensus 86 ------------~~~----------~---------l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~ 130 (151)
... + +.|....|..+-++--.+..-.|++++ ..++-++++|...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~-~~la~~l~iP~i~ 145 (500)
T PF00201_consen 71 ISKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCG-LALAHYLGIPVII 145 (500)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSH-HHHHHHHHHTHHH
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchh-HHHHHHhcCCeEE
Confidence 000 0 145555566666666677777787743 4566677777753
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=96.54 E-value=0.0039 Score=52.79 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=39.8
Q ss_pred CeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhh
Q 048768 10 PYVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRH 53 (151)
Q Consensus 10 ~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~ 53 (151)
.+|+++..|..||+ ++.||+.|..+|+.|+|.+++...+.+.+.
T Consensus 2 mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a 47 (406)
T COG1819 2 MKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA 47 (406)
T ss_pred ceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh
Confidence 46899999999999 999999999999999999999988877654
No 28
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=95.63 E-value=0.02 Score=49.83 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=30.6
Q ss_pred CeEEEE-cCCChhHH--HHHHHHHHHhCCCEEEEEeCC
Q 048768 10 PYVLIW-PLAALGHV--MLKLAELLCNAGVKITFLNTE 44 (151)
Q Consensus 10 ~hvv~v-P~p~~GHi--~l~Lak~La~~G~~VT~v~t~ 44 (151)
.+|+++ |.++..|. +-.+++.|++||+.||++++.
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~ 58 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPT 58 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 357755 99999999 999999999999999999664
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=95.43 E-value=0.11 Score=41.47 Aligned_cols=36 Identities=31% Similarity=0.519 Sum_probs=27.6
Q ss_pred eEEEEcC-CChhHH--HHHHHHHHHhCCCEEEEEeCCCchh
Q 048768 11 YVLIWPL-AALGHV--MLKLAELLCNAGVKITFLNTEEFHD 48 (151)
Q Consensus 11 hvv~vP~-p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~ 48 (151)
||++.-. -|.||+ ++.+++.| +|+.|++++.....+
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~ 40 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPE 40 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHH
Confidence 3444433 489999 99999999 699999998775543
No 30
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=91.69 E-value=0.25 Score=39.56 Aligned_cols=31 Identities=32% Similarity=0.379 Sum_probs=26.7
Q ss_pred CCChhHH--HHHHHHHHHhCCCEEEEEeCCCch
Q 048768 17 LAALGHV--MLKLAELLCNAGVKITFLNTEEFH 47 (151)
Q Consensus 17 ~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~ 47 (151)
--|.||+ ++.||+.|.++|+.|+|++.....
T Consensus 11 ~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~ 43 (279)
T TIGR03590 11 EIGLGHVMRCLTLARALHAQGAEVAFACKPLPG 43 (279)
T ss_pred cccccHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 3478999 999999999999999999876543
No 31
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=91.49 E-value=0.21 Score=40.73 Aligned_cols=33 Identities=30% Similarity=0.436 Sum_probs=28.6
Q ss_pred cCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchh
Q 048768 16 PLAALGHV--MLKLAELLCNAGVKITFLNTEEFHD 48 (151)
Q Consensus 16 P~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~ 48 (151)
+--|+||+ ++.||+.|..+|+.++|++.+.+..
T Consensus 11 ~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~ 45 (318)
T COG3980 11 LEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEA 45 (318)
T ss_pred cccCcchhhhHHHHHHHHHhcCceEEEecccchhh
Confidence 34688999 9999999999999999998877543
No 32
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=87.68 E-value=2.2 Score=30.79 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=37.2
Q ss_pred CCCCeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhh
Q 048768 7 VSYPYVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRH 53 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~ 53 (151)
|++++||+.-.++-+|- ..-++..|.++|++|+++-..-..+.+...
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~ 49 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDA 49 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 78899999999999999 555556667799999999776666655544
No 33
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=84.48 E-value=1.5 Score=30.29 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcC
Q 048768 24 MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTIT 73 (151)
Q Consensus 24 ~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp 73 (151)
+.+|++.|+++|++||+++......... . . ..+++++.+|
T Consensus 7 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~--~----~~~~~~~~~~ 46 (160)
T PF13579_consen 7 VRELARALAARGHEVTVVTPQPDPEDDE----E--E----EDGVRVHRLP 46 (160)
T ss_dssp HHHHHHHHHHTT-EEEEEEE---GGG-S----E--E----ETTEEEEEE-
T ss_pred HHHHHHHHHHCCCEEEEEecCCCCcccc----c--c----cCCceEEecc
Confidence 7899999999999999998654443211 0 1 2357777776
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=82.28 E-value=3.8 Score=34.64 Aligned_cols=55 Identities=24% Similarity=0.442 Sum_probs=40.8
Q ss_pred CCeEEEEc--CCChhHH--HHHHHHHHHhC--CCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcCC
Q 048768 9 YPYVLIWP--LAALGHV--MLKLAELLCNA--GVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTITD 74 (151)
Q Consensus 9 ~~hvv~vP--~p~~GHi--~l~Lak~La~~--G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd 74 (151)
.+.|+|+. ..|-||+ ++.+|..|.+. |+.|++++-......+. . ..+++++.||.
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~--------~---~~gVd~V~LPs 69 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP--------G---PAGVDFVKLPS 69 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC--------C---cccCceEecCc
Confidence 34788886 4788999 99999999986 99999997544332211 1 24789999984
No 35
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=81.04 E-value=3.2 Score=33.51 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=27.5
Q ss_pred EEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCC
Q 048768 13 LIWPLAALGHV--MLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 13 v~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~ 45 (151)
+.+--.|.||+ .+.++++|.+ |++|+++++..
T Consensus 4 ~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~ 37 (321)
T TIGR00661 4 YSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR 37 (321)
T ss_pred EEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC
Confidence 34556788999 9999999999 99999998776
No 36
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=79.97 E-value=4.9 Score=34.15 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=29.1
Q ss_pred CCCCeEEEE----cCCC--hhHH-HHHHHHHHHhCCCEEEEEeCCCc
Q 048768 7 VSYPYVLIW----PLAA--LGHV-MLKLAELLCNAGVKITFLNTEEF 46 (151)
Q Consensus 7 m~~~hvv~v----P~p~--~GHi-~l~Lak~La~~G~~VT~v~t~~~ 46 (151)
+++.+|+++ |++. -++. +.++++.|.++|++|+++++...
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~ 102 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEG 102 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 444577777 2222 2355 99999999999999999987543
No 37
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=79.75 E-value=4.4 Score=32.38 Aligned_cols=35 Identities=31% Similarity=0.446 Sum_probs=30.2
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCC
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~ 45 (151)
+|+++-.=..||+ .++|++.|.++|+.|++++.+.
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~ 38 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKR 38 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCC
Confidence 5788888888999 5799999999999999997643
No 38
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=78.06 E-value=5.7 Score=32.13 Aligned_cols=35 Identities=34% Similarity=0.399 Sum_probs=30.2
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCC
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~ 45 (151)
.|+++.--.-||. +++|++.|.++|+.|++++.+.
T Consensus 3 ~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~ 39 (357)
T PRK00726 3 KILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTAR 39 (357)
T ss_pred EEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 4777776667999 8999999999999999998755
No 39
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=77.03 E-value=6.1 Score=31.31 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=22.8
Q ss_pred ChhHH---HHHHHHHHHhCCCEEEEEeCCCc
Q 048768 19 ALGHV---MLKLAELLCNAGVKITFLNTEEF 46 (151)
Q Consensus 19 ~~GHi---~l~Lak~La~~G~~VT~v~t~~~ 46 (151)
..|-+ ..++++.|.++|++|++++....
T Consensus 13 ~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~ 43 (363)
T cd04955 13 KYGGFETFVEELAPRLVARGHEVTVYCRSPY 43 (363)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 33555 89999999999999999987543
No 40
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=75.78 E-value=10 Score=32.22 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=45.7
Q ss_pred CCCCCCCCCeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCC--chhHHhhhccccccccCCCCCceEEEcCC
Q 048768 2 RDRNSVSYPYVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEE--FHDRLIRHRSDVFSRCINLPGFQFKTITD 74 (151)
Q Consensus 2 ~~~~~m~~~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~--~~~~~~~~~~~~~~~~~~~~~i~~~~lpd 74 (151)
++++.-++.|++++-.---||- |--=|.-|+..|++|+++---. .++.+.. +|+|+++.+|.
T Consensus 5 ~~~~~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~-----------hprI~ih~m~~ 70 (444)
T KOG2941|consen 5 FYENKSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLN-----------HPRIRIHGMPN 70 (444)
T ss_pred hcccccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhc-----------CCceEEEeCCC
Confidence 4555666778888888888998 8888999999999999984322 3333321 57899998873
No 41
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=75.44 E-value=5.2 Score=27.99 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=19.5
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCch
Q 048768 24 MLKLAELLCNAGVKITFLNTEEFH 47 (151)
Q Consensus 24 ~l~Lak~La~~G~~VT~v~t~~~~ 47 (151)
+++|++.|+++|++||+++.....
T Consensus 18 ~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 18 VLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHTT-EEEEEESS-TT
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCc
Confidence 999999999999999999765443
No 42
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=75.10 E-value=8.1 Score=31.94 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=32.2
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchh
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHD 48 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~ 48 (151)
.|++.---.-||+ .+.+|+.|.++|++|+|+.++...+
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e 42 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIE 42 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccc
Confidence 4777777778999 9999999999999999998766543
No 43
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=74.73 E-value=6.6 Score=31.41 Aligned_cols=34 Identities=38% Similarity=0.504 Sum_probs=27.4
Q ss_pred EEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCC
Q 048768 12 VLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 12 vv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~ 45 (151)
|++.--=..||+ .+++++.|.++|++|++++...
T Consensus 2 ~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~ 37 (350)
T cd03785 2 ILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKR 37 (350)
T ss_pred EEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 444444556999 8899999999999999998754
No 44
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.08 E-value=6.5 Score=33.93 Aligned_cols=43 Identities=26% Similarity=0.195 Sum_probs=33.8
Q ss_pred CCCCCCCCCCeEEEEcCCCh-hHHHHHHHHHHHhCCCEEEEEeC
Q 048768 1 LRDRNSVSYPYVLIWPLAAL-GHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 1 ~~~~~~m~~~hvv~vP~p~~-GHi~l~Lak~La~~G~~VT~v~t 43 (151)
|+-++.++.|||+++.-|+- |=-.+-.||+|+.+|+.++++..
T Consensus 258 L~srn~~~~P~V~Ilcgpgnnggdg~v~gRHL~~~G~~~vi~~p 301 (453)
T KOG2585|consen 258 LMSRNSHQWPLVAILCGPGNNGGDGLVCGRHLAQHGYTPVIYYP 301 (453)
T ss_pred ccccccCCCceEEEEeCCCCccchhHHHHHHHHHcCceeEEEee
Confidence 46688999999999998875 22244499999999988887754
No 45
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=72.48 E-value=4.2 Score=32.52 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=26.0
Q ss_pred EEEEcCCChhHH---HHHHHHHHHhCCCEEEEEeCCC
Q 048768 12 VLIWPLAALGHV---MLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 12 vv~vP~p~~GHi---~l~Lak~La~~G~~VT~v~t~~ 45 (151)
|+++.+|..|=. ..++++.|.++|++|+++++..
T Consensus 3 i~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 3 IGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred eeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 455555544333 9999999999999999998754
No 46
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=72.44 E-value=6.4 Score=31.91 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=24.4
Q ss_pred EEcCCChh--HH-HHHHHHHHHhCCCEEEEEeCCC
Q 048768 14 IWPLAALG--HV-MLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 14 ~vP~p~~G--Hi-~l~Lak~La~~G~~VT~v~t~~ 45 (151)
+.|....| .- +.+||+.|+++|++||++++..
T Consensus 6 ~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~ 40 (392)
T cd03805 6 IHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHH 40 (392)
T ss_pred ECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 44554333 44 8999999999999999998743
No 47
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=71.47 E-value=7.9 Score=29.82 Aligned_cols=37 Identities=19% Similarity=0.089 Sum_probs=28.0
Q ss_pred EEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchh
Q 048768 12 VLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHD 48 (151)
Q Consensus 12 vv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~ 48 (151)
|+++.....|+. ..++++.|.++|++|+++++.....
T Consensus 2 Il~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~ 40 (359)
T cd03808 2 ILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDEL 40 (359)
T ss_pred eeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcc
Confidence 444444456666 9999999999999999998765543
No 48
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=71.19 E-value=8.4 Score=29.51 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=25.5
Q ss_pred EEcCCC-hhHH---HHHHHHHHHhCCCEEEEEeCCCch
Q 048768 14 IWPLAA-LGHV---MLKLAELLCNAGVKITFLNTEEFH 47 (151)
Q Consensus 14 ~vP~p~-~GHi---~l~Lak~La~~G~~VT~v~t~~~~ 47 (151)
+.+... .|.. ++++++.|.++|+.|+++++....
T Consensus 5 ~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (348)
T cd03820 5 VIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGE 42 (348)
T ss_pred EeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 334433 4555 889999999999999999876553
No 49
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=70.66 E-value=6.1 Score=33.16 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=26.4
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCC
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTE 44 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~ 44 (151)
.|.++-....|+- +..+|+.|+++|++||+++..
T Consensus 5 ~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~ 40 (415)
T cd03816 5 RVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYL 40 (415)
T ss_pred EEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEec
Confidence 4555555555664 899999999999999999764
No 50
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=69.13 E-value=27 Score=23.88 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=32.3
Q ss_pred EEEEcCCChhHHHHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcC
Q 048768 12 VLIWPLAALGHVMLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTIT 73 (151)
Q Consensus 12 vv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp 73 (151)
|+++.--..+| .+++++.|.++|++|++++.......... ..++++..++
T Consensus 2 Il~i~~~~~~~-~~~~~~~L~~~g~~V~ii~~~~~~~~~~~-----------~~~i~~~~~~ 51 (139)
T PF13477_consen 2 ILLIGNTPSTF-IYNLAKELKKRGYDVHIITPRNDYEKYEI-----------IEGIKVIRLP 51 (139)
T ss_pred EEEEecCcHHH-HHHHHHHHHHCCCEEEEEEcCCCchhhhH-----------hCCeEEEEec
Confidence 44444444444 56889999999999999998444322110 2367777775
No 51
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=65.91 E-value=18 Score=24.66 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=31.5
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhh
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIR 52 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~ 52 (151)
+||+...|+-.|- .+-++..|.++|++|.++-.....+.+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~ 44 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVE 44 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 3788899999999 66667777789999988865555444433
No 52
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=64.89 E-value=13 Score=28.95 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=23.3
Q ss_pred hhHH--HHHHHHHHHhCCCEEEEEeCCCch
Q 048768 20 LGHV--MLKLAELLCNAGVKITFLNTEEFH 47 (151)
Q Consensus 20 ~GHi--~l~Lak~La~~G~~VT~v~t~~~~ 47 (151)
-|+- ..++++.|.++|+.|+++++....
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 44 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGEDP 44 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCCC
Confidence 4665 889999999999999999876544
No 53
>PRK10307 putative glycosyl transferase; Provisional
Probab=64.63 E-value=13 Score=30.72 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=20.2
Q ss_pred HHHHHHHHHhCCCEEEEEeCCC
Q 048768 24 MLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 24 ~l~Lak~La~~G~~VT~v~t~~ 45 (151)
+.+|++.|.++|++|++++++.
T Consensus 21 ~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 21 TGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred HHHHHHHHHHCCCeEEEEecCC
Confidence 8899999999999999999763
No 54
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=64.33 E-value=41 Score=25.57 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=41.4
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeC---CCchhHHhhhccccccccCCCCCceEEEcCCC
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNAGVKITFLNT---EEFHDRLIRHRSDVFSRCINLPGFQFKTITDR 75 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t---~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd~ 75 (151)
-|+++-.++.-|- ..+.+++|.+.|++|.++.- ..|.+++..-...... ..+=+|+.+|.|
T Consensus 110 ivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~----~~~s~~~~~~~~ 175 (187)
T cd01452 110 IVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNG----KDGSHLVSVPPG 175 (187)
T ss_pred EEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcC----CCCceEEEeCCC
Confidence 4888889988888 77999999999999999843 3455555433221100 123577888754
No 55
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=64.16 E-value=12 Score=29.22 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=23.7
Q ss_pred CChhHH--HHHHHHHHHhCCCEEEEEeCCCc
Q 048768 18 AALGHV--MLKLAELLCNAGVKITFLNTEEF 46 (151)
Q Consensus 18 p~~GHi--~l~Lak~La~~G~~VT~v~t~~~ 46 (151)
...|+- ..++++.|.++|+.|+++++...
T Consensus 12 ~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 12 QVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred CCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 345666 99999999999999999987544
No 56
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=63.73 E-value=14 Score=30.49 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=22.0
Q ss_pred cCCChhHHHHHHHHHHHhCCCEEEEEeCCCc
Q 048768 16 PLAALGHVMLKLAELLCNAGVKITFLNTEEF 46 (151)
Q Consensus 16 P~p~~GHi~l~Lak~La~~G~~VT~v~t~~~ 46 (151)
.||+| +-+||+.|+++|+.|++++....
T Consensus 8 ~~p~~---~~~la~~L~~~G~~v~~~~~~~~ 35 (396)
T cd03818 8 NFPGQ---FRHLAPALAAQGHEVVFLTEPNA 35 (396)
T ss_pred CCchh---HHHHHHHHHHCCCEEEEEecCCC
Confidence 45666 45689999999999999976544
No 57
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=57.62 E-value=18 Score=28.61 Aligned_cols=45 Identities=16% Similarity=0.386 Sum_probs=36.4
Q ss_pred eEEEEcCCChh--HHHHHHHHHHHhCCCEEEEEeCCCchhHHhhhcc
Q 048768 11 YVLIWPLAALG--HVMLKLAELLCNAGVKITFLNTEEFHDRLIRHRS 55 (151)
Q Consensus 11 hvv~vP~p~~G--Hi~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~ 55 (151)
-++++=-||-| |+...++..|+.+|++|+|++++.....+..+..
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHh
Confidence 47777777766 4489999999988999999999988888766543
No 58
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=56.67 E-value=14 Score=29.15 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=22.5
Q ss_pred cCCCh-hHH--HHHHHHHHHhCCCEEEEEeCC
Q 048768 16 PLAAL-GHV--MLKLAELLCNAGVKITFLNTE 44 (151)
Q Consensus 16 P~p~~-GHi--~l~Lak~La~~G~~VT~v~t~ 44 (151)
+..+. |+. .++|++.|.++|++|++++..
T Consensus 7 ~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~ 38 (360)
T cd04951 7 TGLGLGGAEKQVVDLADQFVAKGHQVAIISLT 38 (360)
T ss_pred cCCCCCCHHHHHHHHHHhcccCCceEEEEEEe
Confidence 43344 445 999999999999999999753
No 59
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=56.65 E-value=17 Score=28.20 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=23.0
Q ss_pred hhHH--HHHHHHHHHhCCCEEEEEeCCCch
Q 048768 20 LGHV--MLKLAELLCNAGVKITFLNTEEFH 47 (151)
Q Consensus 20 ~GHi--~l~Lak~La~~G~~VT~v~t~~~~ 47 (151)
-|+. ..++++.|.++|+.|+++++....
T Consensus 14 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (375)
T cd03821 14 GGPVRVVLNLSKALAKLGHEVTVATTDAGG 43 (375)
T ss_pred CCeehHHHHHHHHHHhcCCcEEEEecCCCC
Confidence 3555 999999999999999999876543
No 60
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=55.93 E-value=20 Score=26.26 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEe
Q 048768 7 VSYPYVLIWPLAALGHV--MLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~ 42 (151)
+.++.|++.+.-.-||= .=-+++.|.+.|+.|.+..
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g 47 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLG 47 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecC
Confidence 78899999999988999 6667788889999988763
No 61
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=55.60 E-value=9 Score=30.79 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCc
Q 048768 24 MLKLAELLCNAGVKITFLNTEEF 46 (151)
Q Consensus 24 ~l~Lak~La~~G~~VT~v~t~~~ 46 (151)
+.+|++.|+++|+.|+++++...
T Consensus 27 ~~~l~~~L~~~g~~V~v~~~~~~ 49 (398)
T cd03800 27 VLELARALARLGHEVDIFTRRID 49 (398)
T ss_pred HHHHHHHHhccCceEEEEEecCC
Confidence 99999999999999999986543
No 62
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=55.20 E-value=15 Score=28.56 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=23.7
Q ss_pred hhHH--HHHHHHHHHhCCCEEEEEeCCCch
Q 048768 20 LGHV--MLKLAELLCNAGVKITFLNTEEFH 47 (151)
Q Consensus 20 ~GHi--~l~Lak~La~~G~~VT~v~t~~~~ 47 (151)
.|+- +.++++.|+++|++|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPNY 43 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCCc
Confidence 4777 999999999999999999865443
No 63
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=54.75 E-value=18 Score=28.54 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=25.5
Q ss_pred EcCCChhHH---HHHHHHHHHhCCCEEEEEeCCC
Q 048768 15 WPLAALGHV---MLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 15 vP~p~~GHi---~l~Lak~La~~G~~VT~v~t~~ 45 (151)
+|....|-+ ..++|+.|.++|+.|++++...
T Consensus 4 ~~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~ 37 (355)
T cd03819 4 LPALESGGVERGTLELARALVERGHRSLVASAGG 37 (355)
T ss_pred chhhccCcHHHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 466666666 9999999999999999997644
No 64
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=54.48 E-value=22 Score=26.98 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=22.5
Q ss_pred EcCCChhHHHHHHHHHHHhCCCEEEEEeCCC
Q 048768 15 WPLAALGHVMLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 15 vP~p~~GHi~l~Lak~La~~G~~VT~v~t~~ 45 (151)
+-=+..|.+...||+.+..+|+.||++..+.
T Consensus 23 ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 23 ITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp EEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred ecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 3345678888899999999999999998774
No 65
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=54.35 E-value=28 Score=29.18 Aligned_cols=54 Identities=26% Similarity=0.359 Sum_probs=37.1
Q ss_pred EEEEcCCChhHH--HHHHHHHHHhCCC-EEEEEeCCCchhHHhhhccccccccCCCCCceEEEcCCC
Q 048768 12 VLIWPLAALGHV--MLKLAELLCNAGV-KITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTITDR 75 (151)
Q Consensus 12 vv~vP~p~~GHi--~l~Lak~La~~G~-~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd~ 75 (151)
+++.-.-.-||+ .+.+++.|.++|. +|.++-+....+..... ..++.++.++.+
T Consensus 3 ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~----------~~~~~~~~I~~~ 59 (357)
T COG0707 3 IVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK----------QYGIEFELIPSG 59 (357)
T ss_pred EEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc----------ccCceEEEEecc
Confidence 556666677999 9999999999999 56666565554332111 236788888743
No 66
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=54.25 E-value=27 Score=27.42 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=23.3
Q ss_pred ChhHH--HHHHHHHHHhCCCEEEEEeCCCch
Q 048768 19 ALGHV--MLKLAELLCNAGVKITFLNTEEFH 47 (151)
Q Consensus 19 ~~GHi--~l~Lak~La~~G~~VT~v~t~~~~ 47 (151)
.-|.- ..++++.|..+|++|+++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPEP 43 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 33555 889999999999999999876543
No 67
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.76 E-value=29 Score=29.25 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=27.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeCC
Q 048768 7 VSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNTE 44 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t~ 44 (151)
|+...|+++ |-|.+.+.+|+.|+++|+.||++...
T Consensus 3 ~~~k~v~ii---G~g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 3 LKGKKVLVV---GAGVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred cCCCEEEEE---CCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 445566666 56779449999999999999998654
No 68
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=53.75 E-value=20 Score=27.30 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=44.8
Q ss_pred hHH---HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcCCCCCCCCCcCccchhhh-cccccc
Q 048768 21 GHV---MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTITDRLPLNHPRISDKLHEY-WNGFMS 96 (151)
Q Consensus 21 GHi---~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd~lp~~~~~~~~~~~~l-~D~~~~ 96 (151)
|=+ .=+|+.+|+++|++||+.+...+...-.. . ..+++.+.+|. +..... ..+ +|+++.
T Consensus 17 GGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~-------~---y~gv~l~~i~~--~~~g~~-----~si~yd~~sl 79 (185)
T PF09314_consen 17 GGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEF-------E---YNGVRLVYIPA--PKNGSA-----ESIIYDFLSL 79 (185)
T ss_pred CcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCc-------c---cCCeEEEEeCC--CCCCch-----HHHHHHHHHH
Confidence 555 56789999999999999987555432111 1 35788888873 111100 012 777653
Q ss_pred -hHHHHHHH--hCCceEEEeccc
Q 048768 97 -FAIDVARV--VGISIFYFRTIR 116 (151)
Q Consensus 97 -w~~~vA~~--lgIP~v~f~t~~ 116 (151)
++....++ ..-+.+.....+
T Consensus 80 ~~al~~~~~~~~~~~ii~ilg~~ 102 (185)
T PF09314_consen 80 LHALRFIKQDKIKYDIILILGYG 102 (185)
T ss_pred HHHHHHHhhccccCCEEEEEcCC
Confidence 45545443 344545444444
No 69
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=53.67 E-value=15 Score=28.72 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.0
Q ss_pred hhHH--HHHHHHHHHhCCCEEEEEeCCCc
Q 048768 20 LGHV--MLKLAELLCNAGVKITFLNTEEF 46 (151)
Q Consensus 20 ~GHi--~l~Lak~La~~G~~VT~v~t~~~ 46 (151)
-|+. +.+|++.|.++|+.|+++++...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4666 99999999999999999987643
No 70
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.30 E-value=45 Score=25.02 Aligned_cols=38 Identities=24% Similarity=0.181 Sum_probs=26.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeCC
Q 048768 5 NSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNTE 44 (151)
Q Consensus 5 ~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t~ 44 (151)
.+|+..++++. -+-|-+...++++|+++|++|.++...
T Consensus 3 ~~~~~~~vlVt--G~sg~iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 3 QSLQGKNALIT--GAGRGIGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred ccCCCCEEEEE--cCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 34544455443 245666999999999999998887543
No 71
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=52.33 E-value=40 Score=26.32 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=61.0
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhhcccc---ccccCCCCCceEEEcCCCCCCCCCcCcc
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDV---FSRCINLPGFQFKTITDRLPLNHPRISD 85 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~---~~~~~~~~~i~~~~lpd~lp~~~~~~~~ 85 (151)
-+++.=.|+.|.. .+|++...+.+|..+-+++++.....+....... .+.......+.+. |..+........
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~---d~~~~~~~~~~~ 101 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAIL---DAFLSEKGLVSI 101 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHhhcCCEEEE---Eccccccccccc
Confidence 4677788999999 9999999999999999999998877665442100 0000000011221 111111000000
Q ss_pred ch--hhhcccccchHHHHHHHhCCceEEEeccch
Q 048768 86 KL--HEYWNGFMSFAIDVARVVGISIFYFRTIRA 117 (151)
Q Consensus 86 ~~--~~l~D~~~~w~~~vA~~lgIP~v~f~t~~A 117 (151)
.. ....+.+..+..+++++.+.-++++-..+.
T Consensus 102 ~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~ 135 (260)
T COG0467 102 VVGDPLDLEELLDRIREIVEKEGADRVVIDSITE 135 (260)
T ss_pred cccCCccHHHHHHHHHHHHHHhCCCEEEEeCCch
Confidence 00 001334667888888998888888877773
No 72
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=52.27 E-value=19 Score=29.73 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=20.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCCC
Q 048768 24 MLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 24 ~l~Lak~La~~G~~VT~v~t~~ 45 (151)
..+|++.|+++|++|+++++..
T Consensus 20 ~~~la~~L~~~G~~V~v~~~~~ 41 (398)
T cd03796 20 IYQLSQCLIKRGHKVVVITHAY 41 (398)
T ss_pred HHHHHHHHHHcCCeeEEEeccC
Confidence 9999999999999999998753
No 73
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=51.04 E-value=35 Score=26.99 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=25.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 9 YPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 9 ~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
++++++| +.||+...|++....-|++||++-.
T Consensus 100 ~~~L~If---GaG~va~~la~la~~lGf~V~v~D~ 131 (246)
T TIGR02964 100 APHVVLF---GAGHVGRALVRALAPLPCRVTWVDS 131 (246)
T ss_pred CCEEEEE---CCcHHHHHHHHHHhcCCCEEEEEeC
Confidence 3455554 6899988999999999999999853
No 74
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=50.43 E-value=17 Score=29.81 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCc
Q 048768 24 MLKLAELLCNAGVKITFLNTEEF 46 (151)
Q Consensus 24 ~l~Lak~La~~G~~VT~v~t~~~ 46 (151)
..+||+.|.++|++||++++...
T Consensus 26 v~~la~~L~~~G~~V~v~~~~~~ 48 (405)
T TIGR03449 26 ILETATELARRGIEVDIFTRATR 48 (405)
T ss_pred HHHHHHHHhhCCCEEEEEecccC
Confidence 99999999999999999987543
No 75
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=50.08 E-value=52 Score=24.87 Aligned_cols=45 Identities=18% Similarity=0.112 Sum_probs=33.4
Q ss_pred CCeEEEEcCCChhHH-HHHH-HHHHHhCCCEEEEEeCCCchhHHhhh
Q 048768 9 YPYVLIWPLAALGHV-MLKL-AELLCNAGVKITFLNTEEFHDRLIRH 53 (151)
Q Consensus 9 ~~hvv~vP~p~~GHi-~l~L-ak~La~~G~~VT~v~t~~~~~~~~~~ 53 (151)
+++||+...++-.|- -+.+ +..|..+|++|+++-..-..+.+.+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~ 128 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEA 128 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 568999999999999 4444 45556789999988766555555443
No 76
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=49.94 E-value=24 Score=27.52 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=22.7
Q ss_pred ChhHH---HHHHHHHHHhCCCEEEEEeCCCc
Q 048768 19 ALGHV---MLKLAELLCNAGVKITFLNTEEF 46 (151)
Q Consensus 19 ~~GHi---~l~Lak~La~~G~~VT~v~t~~~ 46 (151)
..|=. ..+|++.|.++|+.|++++....
T Consensus 17 ~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~ 47 (335)
T cd03802 17 AYGGTERVVAALTEGLVARGHEVTLFASGDS 47 (335)
T ss_pred ccCcHHHHHHHHHHHHHhcCceEEEEecCCC
Confidence 45444 89999999999999999986543
No 77
>PRK08703 short chain dehydrogenase; Provisional
Probab=49.70 E-value=45 Score=25.07 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=27.0
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 4 RNSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 4 ~~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
|+.|+..++++.- +-|=+..++++.|+++|.+|+++.
T Consensus 1 ~~~l~~k~vlItG--~sggiG~~la~~l~~~g~~V~~~~ 37 (239)
T PRK08703 1 MATLSDKTILVTG--ASQGLGEQVAKAYAAAGATVILVA 37 (239)
T ss_pred CCCCCCCEEEEEC--CCCcHHHHHHHHHHHcCCEEEEEe
Confidence 5667666666653 455557888999999999987774
No 78
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.60 E-value=46 Score=24.72 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=26.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 5 NSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 5 ~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
..|+...+++ .-+-|++..+++++|+++|++|+++..
T Consensus 2 ~~~~~~~vlI--tGasg~iG~~l~~~l~~~g~~v~~~~~ 38 (249)
T PRK12825 2 GSLMGRVALV--TGAARGLGRAIALRLARAGADVVVHYR 38 (249)
T ss_pred CCCCCCEEEE--eCCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 3444445555 335788899999999999999866543
No 79
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=49.33 E-value=39 Score=28.69 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=26.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 8 SYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 8 ~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
...+|.++ |.|++.+.+|..|+++|++|+.+..
T Consensus 2 ~~~kI~VI---GlG~~G~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 2 SFETISVI---GLGYIGLPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred CccEEEEE---CcchhhHHHHHHHHhCCCEEEEEeC
Confidence 33455544 8899988999999999999999865
No 80
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.55 E-value=33 Score=29.72 Aligned_cols=33 Identities=33% Similarity=0.394 Sum_probs=26.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 7 VSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
|+..+|++| +-||=-|--|..|+++|++|+++=
T Consensus 1 ~~~~dvvVI---GaG~~GL~aAa~LA~~G~~V~VlE 33 (487)
T COG1233 1 MPMYDVVVI---GAGLNGLAAAALLARAGLKVTVLE 33 (487)
T ss_pred CCCccEEEE---CCChhHHHHHHHHHhCCCEEEEEE
Confidence 445577776 578888888999999999999983
No 81
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=48.35 E-value=56 Score=24.01 Aligned_cols=33 Identities=33% Similarity=0.266 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCChhHH---HHHHHHHHHhCCCEEEEEe
Q 048768 8 SYPYVLIWPLAALGHV---MLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 8 ~~~hvv~vP~p~~GHi---~l~Lak~La~~G~~VT~v~ 42 (151)
+.+.|+++--+ |+- .+-+||.|+++|++|+++.
T Consensus 24 ~~~~v~il~G~--GnNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 24 KGPRVLILCGP--GNNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp TT-EEEEEE-S--SHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCeEEEEECC--CCChHHHHHHHHHHHHCCCeEEEEE
Confidence 34577777765 555 9999999999999999953
No 82
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=48.21 E-value=29 Score=24.93 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.4
Q ss_pred ChhHH--HHHHHHHHHhCCCEEEEEe
Q 048768 19 ALGHV--MLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 19 ~~GHi--~l~Lak~La~~G~~VT~v~ 42 (151)
.-|+- ...+++.|.++|+.|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 55777 9999999999999999998
No 83
>PRK07326 short chain dehydrogenase; Provisional
Probab=48.04 E-value=49 Score=24.68 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=26.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 6 SVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 6 ~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
.|.+..+++.- +-|.+...++++|+++|++|..+..
T Consensus 3 ~~~~~~ilItG--atg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 3 SLKGKVALITG--GSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CCCCCEEEEEC--CCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 34444555544 5788889999999999999887754
No 84
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=48.01 E-value=40 Score=21.67 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=24.1
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhCCCEEEEE
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNAGVKITFL 41 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v 41 (151)
-+|++-=-...|. .-++|+.|+++|+.|-..
T Consensus 17 ~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 17 AVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3455555556888 999999999999998765
No 85
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=47.95 E-value=25 Score=27.57 Aligned_cols=22 Identities=18% Similarity=0.504 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCCC
Q 048768 24 MLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 24 ~l~Lak~La~~G~~VT~v~t~~ 45 (151)
|-++|..|.++|++|+++..+.
T Consensus 51 MRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 51 MRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHhCCCEEEEEeCCC
Confidence 9999999999999999998773
No 86
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=47.48 E-value=42 Score=26.36 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=31.7
Q ss_pred CCCCC-CCCCeEEEEcCCChhHH-HHHHHHHHHhCCCEEEEEeC
Q 048768 2 RDRNS-VSYPYVLIWPLAALGHV-MLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 2 ~~~~~-m~~~hvv~vP~p~~GHi-~l~Lak~La~~G~~VT~v~t 43 (151)
+++++ -.++.||+++-.+.+.- .-.+++.|.++|++|..+--
T Consensus 10 ~~~~~~~~~p~vvliHG~~~~~~~w~~~~~~L~~~g~~vi~~dl 53 (273)
T PLN02211 10 TDMKPNRQPPHFVLIHGISGGSWCWYKIRCLMENSGYKVTCIDL 53 (273)
T ss_pred ccccccCCCCeEEEECCCCCCcCcHHHHHHHHHhCCCEEEEecc
Confidence 45555 33478999998777666 88889999999999888743
No 87
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=47.29 E-value=35 Score=26.84 Aligned_cols=36 Identities=31% Similarity=0.231 Sum_probs=26.8
Q ss_pred eEEEEcC-CC-hhHH--HHHHHHHHHhCCCEEEEEeCCCc
Q 048768 11 YVLIWPL-AA-LGHV--MLKLAELLCNAGVKITFLNTEEF 46 (151)
Q Consensus 11 hvv~vP~-p~-~GHi--~l~Lak~La~~G~~VT~v~t~~~ 46 (151)
+|+++.. +. .|+- ...+++.|.++|+.|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 3555543 34 4555 99999999999999999986654
No 88
>PRK12746 short chain dehydrogenase; Provisional
Probab=46.78 E-value=64 Score=24.38 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=27.0
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 4 RNSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 4 ~~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
|++|+...+++.- +.|-+..+++++|+++|.+|.++.
T Consensus 1 ~~~~~~~~ilItG--asg~iG~~la~~l~~~G~~v~i~~ 37 (254)
T PRK12746 1 MKNLDGKVALVTG--ASRGIGRAIAMRLANDGALVAIHY 37 (254)
T ss_pred CCCCCCCEEEEeC--CCchHHHHHHHHHHHCCCEEEEEc
Confidence 4456555555443 567779999999999999987764
No 89
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=46.63 E-value=63 Score=22.29 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=31.1
Q ss_pred eEEEEcCCChhHH-HHHHH-HHHHhCCCEEEEEeCCCchhHHhhh
Q 048768 11 YVLIWPLAALGHV-MLKLA-ELLCNAGVKITFLNTEEFHDRLIRH 53 (151)
Q Consensus 11 hvv~vP~p~~GHi-~l~La-k~La~~G~~VT~v~t~~~~~~~~~~ 53 (151)
+||+.-.++-.|- -+.+. ..|..+|++|.++-.....+.+...
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~ 45 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEA 45 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 4788889999999 55554 5555689999999776555554433
No 90
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=46.54 E-value=75 Score=24.04 Aligned_cols=46 Identities=13% Similarity=0.041 Sum_probs=34.7
Q ss_pred CCCeEEEEcCCChhHH-HHHHH-HHHHhCCCEEEEEeCCCchhHHhhh
Q 048768 8 SYPYVLIWPLAALGHV-MLKLA-ELLCNAGVKITFLNTEEFHDRLIRH 53 (151)
Q Consensus 8 ~~~hvv~vP~p~~GHi-~l~La-k~La~~G~~VT~v~t~~~~~~~~~~ 53 (151)
.+++||+...++-.|- -+.+. ..|-++|++|+++-..-..+.+.+.
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~ 130 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEK 130 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHH
Confidence 4578999999999999 44444 5555689999999776666665544
No 91
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=45.97 E-value=54 Score=22.49 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 8 SYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 8 ~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
+...++++.+-..-|..++.++.|.+.|++++++.
T Consensus 8 ~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~ 42 (124)
T PF02780_consen 8 EGADITIIAYGSMVEEALEAAEELEEEGIKAGVID 42 (124)
T ss_dssp SSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEe
Confidence 34567888765555559999999999999999974
No 92
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=45.88 E-value=38 Score=25.79 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=23.5
Q ss_pred ChhHH--HHHHHHHHHhCCCEEEEEeCCCch
Q 048768 19 ALGHV--MLKLAELLCNAGVKITFLNTEEFH 47 (151)
Q Consensus 19 ~~GHi--~l~Lak~La~~G~~VT~v~t~~~~ 47 (151)
.-|+. +.++++.|.+.|+.|++++.....
T Consensus 11 ~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~ 41 (353)
T cd03811 11 GGGAERVLLNLANGLDKRGYDVTLVVLRDEG 41 (353)
T ss_pred CCCcchhHHHHHHHHHhcCceEEEEEcCCCC
Confidence 45555 999999999999999999865443
No 93
>PRK06194 hypothetical protein; Provisional
Probab=45.70 E-value=58 Score=25.23 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=26.4
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 4 RNSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 4 ~~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
|.+|+...+++ .- +-|-+..+++++|+++|.+|+++..
T Consensus 1 m~~~~~k~vlV-tG-asggIG~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 1 MKDFAGKVAVI-TG-AASGFGLAFARIGAALGMKLVLADV 38 (287)
T ss_pred CcCCCCCEEEE-eC-CccHHHHHHHHHHHHCCCEEEEEeC
Confidence 45565545443 32 4466788999999999999887743
No 94
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=45.47 E-value=39 Score=21.18 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCCC
Q 048768 21 GHVMLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 21 GHi~l~Lak~La~~G~~VT~v~t~~ 45 (151)
|=+.+++|..|++.|.+||++....
T Consensus 8 G~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 8 GFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CHHHHHHHHHHHHhCcEEEEEeccc
Confidence 3347899999999999999996543
No 95
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=44.56 E-value=50 Score=27.81 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=27.7
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeCCCc
Q 048768 5 NSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNTEEF 46 (151)
Q Consensus 5 ~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t~~~ 46 (151)
+.|++.+||++= -||-.+..+++|...+++||++.....
T Consensus 6 ~~~~~~~vVIvG---gG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 6 ARLKKPNVVVLG---TGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred cCCCCCeEEEEC---CCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 456777888873 555545567888767899999965443
No 96
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.91 E-value=36 Score=27.19 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=32.2
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEE
Q 048768 4 RNSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFL 41 (151)
Q Consensus 4 ~~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v 41 (151)
++.|+.+.+|++.-=++|-|.-.||+++++.|+.|--.
T Consensus 1 ~e~~~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~At 38 (289)
T KOG1209|consen 1 SELQSQPKKVLITGCSSGGIGYALAKEFARNGYLVYAT 38 (289)
T ss_pred CCcccCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEE
Confidence 46788888899998899999778899999999997544
No 97
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=43.26 E-value=49 Score=24.88 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=69.1
Q ss_pred EEcCCChhHH-HHHHHHHHHhCCCEEEEEeCCCchhHHhhh--cc-ccccccCCCCCceEEEcCCCCCC----CCC----
Q 048768 14 IWPLAALGHV-MLKLAELLCNAGVKITFLNTEEFHDRLIRH--RS-DVFSRCINLPGFQFKTITDRLPL----NHP---- 81 (151)
Q Consensus 14 ~vP~p~~GHi-~l~Lak~La~~G~~VT~v~t~~~~~~~~~~--~~-~~~~~~~~~~~i~~~~lpd~lp~----~~~---- 81 (151)
+.=.-+.|-. ..++.++|.++|..|.++.|+.-.+-+... .. ..... . .-.+.. .++... +..
T Consensus 4 lgvtGsiaa~ka~~lir~L~~~g~~V~vv~T~~A~~fv~~e~~~~~~~l~~---~-~~~~~~-~~~~~~~i~~~s~~aD~ 78 (181)
T TIGR00421 4 VAMTGASGVIYGIRLLEVLKEAGVEVHLVISDWAKETIKYETDIDPGEVEE---L-ATKYYD-ADDFAAPIASGSFPFDG 78 (181)
T ss_pred EEEECHHHHHHHHHHHHHHHHCCCEEEEEECccHHHHHHHHHCCCHHHHHH---H-hhhhCC-CcccccccccCCchhCE
Confidence 3333455777 999999999999999999998766543221 00 00000 0 000000 000000 000
Q ss_pred ----cCccch-hh----hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHHHHHhcCCc
Q 048768 82 ----RISDKL-HE----YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQIIDAGEL 135 (151)
Q Consensus 82 ----~~~~~~-~~----l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~~~g~~ 135 (151)
+.+.+. .+ ++|-+.+-+.+++-+.+.|.+++-......-...-++-.|.+.|..
T Consensus 79 ~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ 141 (181)
T TIGR00421 79 MVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPRETPLNSIHLENMLRLSRMGAI 141 (181)
T ss_pred EEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeCCCcCCHHHHHHHHHHHHCCCE
Confidence 011111 12 3899988888888889999999887666666667778889998874
No 98
>PRK12939 short chain dehydrogenase; Provisional
Probab=43.09 E-value=75 Score=23.80 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=27.0
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 4 RNSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 4 ~~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
|..|+..++++.= +.|.+...++++|+++|++|..+.
T Consensus 2 ~~~~~~~~vlItG--a~g~iG~~la~~l~~~G~~v~~~~ 38 (250)
T PRK12939 2 ASNLAGKRALVTG--AARGLGAAFAEALAEAGATVAFND 38 (250)
T ss_pred CCCCCCCEEEEeC--CCChHHHHHHHHHHHcCCEEEEEe
Confidence 4556555555433 457778999999999999987774
No 99
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=42.68 E-value=32 Score=23.12 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=27.2
Q ss_pred CCChhHH---HHHHHHHHHhCCCEEEEEeCCCchhH
Q 048768 17 LAALGHV---MLKLAELLCNAGVKITFLNTEEFHDR 49 (151)
Q Consensus 17 ~p~~GHi---~l~Lak~La~~G~~VT~v~t~~~~~~ 49 (151)
+-++|.+ +..+++.|.++|+.+-.-+-+.|...
T Consensus 31 yR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~ 66 (89)
T PF08444_consen 31 YRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEAS 66 (89)
T ss_pred HhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHH
Confidence 4578888 99999999999999877777777654
No 100
>PRK05920 aromatic acid decarboxylase; Validated
Probab=42.64 E-value=1.6e+02 Score=22.76 Aligned_cols=125 Identities=11% Similarity=0.116 Sum_probs=68.7
Q ss_pred eEEEEcCCChhHH-HHHHHHHHHhCCCEEEEEeCCCchhHHhhhcccccc------c-cC------CCCCceEEEcCCC-
Q 048768 11 YVLIWPLAALGHV-MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFS------R-CI------NLPGFQFKTITDR- 75 (151)
Q Consensus 11 hvv~vP~p~~GHi-~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~------~-~~------~~~~i~~~~lpd~- 75 (151)
+|++-=.-+.|=. .+++.++|.+.|++|+++.|+.-.+-+......... . .+ ....+.+....|-
T Consensus 5 rIllgITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~~~~~~l~~~~v~~~~~~~~~~~~~~~hi~l~~~~d~~ 84 (204)
T PRK05920 5 RIVLAITGASGAIYGVRLLECLLAADYEVHLVISKAAQKVLATETGLKLPAVPDLAEAFLREQLGAAAGQLRVHGKDDWG 84 (204)
T ss_pred EEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHHHHHhCCCCCCCeeecchhhhhccccccCceeEccccccc
Confidence 4544433333334 999999999999999999998765433221110000 0 00 0011222211110
Q ss_pred CCCCCCcCccch-----------hh----hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHHHHHhcCCc
Q 048768 76 LPLNHPRISDKL-----------HE----YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQIIDAGEL 135 (151)
Q Consensus 76 lp~~~~~~~~~~-----------~~----l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~~~g~~ 135 (151)
-+........|. .+ +.|-+..-+.+++-+.+.|.+++-...-..-+..-++-.|.+.|..
T Consensus 85 a~~~sgs~~aD~~vVaPaTantlakiA~GiaD~ll~~~a~~~L~~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ 159 (204)
T PRK05920 85 APIASGSFRTDGMVIAPCSMGTLAAIAHGLSDNLIERAADVVLKERRKLILVPRETPLSLIHLENMLKLAEAGAI 159 (204)
T ss_pred CccccCccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHHHHHCCCE
Confidence 000000000111 12 3888888777777788999998876555555566788899998874
No 101
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=42.36 E-value=65 Score=21.58 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=31.7
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHh
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLI 51 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~ 51 (151)
++++...+...|- ...++..|.++|++|.++-.....+.+.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~ 44 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELV 44 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHH
Confidence 5788888888888 8888999999999999996554444443
No 102
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=42.24 E-value=69 Score=24.63 Aligned_cols=124 Identities=7% Similarity=-0.015 Sum_probs=68.1
Q ss_pred CCeEEEEcCCChhHH-H-HHHHHHHHhCCCEEEEEeCCCchhHHhh---------hccccccccCCCCCceEEEcCC-CC
Q 048768 9 YPYVLIWPLAALGHV-M-LKLAELLCNAGVKITFLNTEEFHDRLIR---------HRSDVFSRCINLPGFQFKTITD-RL 76 (151)
Q Consensus 9 ~~hvv~vP~p~~GHi-~-l~Lak~La~~G~~VT~v~t~~~~~~~~~---------~~~~~~~~~~~~~~i~~~~lpd-~l 76 (151)
..+|++-=.-+.|=+ . .++.++|.++|++|.++.|+.-.+-+.. .... ... .+ + +..+.+ ..
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~~~~~~~~~~~~~l~~-ls~---~~-v-~~~~~~~~~ 78 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTDTRFGKAEEWIKKIEE-ITG---NK-V-INTIVEAEP 78 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHhhhcCChHHHHHHHHH-HHC---CC-c-EEecCCCcc
Confidence 445555444444444 4 9999999999999999998865432211 0000 010 11 1 111111 00
Q ss_pred CCCCC--------cCccc-hhh----hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHHHHHh-cCC--ccCC
Q 048768 77 PLNHP--------RISDK-LHE----YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQIID-AGE--LPIR 138 (151)
Q Consensus 77 p~~~~--------~~~~~-~~~----l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~~-~g~--~~~~ 138 (151)
.++.. +.+.+ +.+ ++|-+..-+.+++=+.+.|.++.-..+..+..---++..|.+ .|+ +|+.
T Consensus 79 isls~~aD~mvIAPaSanTLAKiA~GiaDnll~~aa~a~lke~~PvvlaPAMN~~M~~~~~ni~~L~~~~g~~~i~~~ 156 (196)
T PRK08305 79 LGPKKLLDCMVIAPCTGNTMAKLANAITDSPVLMAAKATLRNQRPVVLAISTNDALGLNAKNLGRLLNTKNIYFVPFG 156 (196)
T ss_pred CccccccCEEEEEeCCHhHHHHHHccccCcHHHHHHHHHhcCCCCEEEEECCCHHHHhCHHHHHHHHhcCCEEEEecC
Confidence 00000 01111 112 388777767777767799999998888776554467777774 665 4554
No 103
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=42.20 E-value=22 Score=25.49 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=21.3
Q ss_pred ChhHHHHHHHHHHHhCCCEEEEEeCC
Q 048768 19 ALGHVMLKLAELLCNAGVKITFLNTE 44 (151)
Q Consensus 19 ~~GHi~l~Lak~La~~G~~VT~v~t~ 44 (151)
|.||+...+++....-|++||++-..
T Consensus 5 GaG~va~al~~la~~lg~~v~v~d~r 30 (136)
T PF13478_consen 5 GAGHVARALARLAALLGFRVTVVDPR 30 (136)
T ss_dssp S-STCHHHHHHHHHHCTEEEEEEES-
T ss_pred eCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 67999888888888899999999664
No 104
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=42.19 E-value=50 Score=25.32 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=24.2
Q ss_pred ChhHH--HHHHHHHHHhCCCEEEEEeCCCch
Q 048768 19 ALGHV--MLKLAELLCNAGVKITFLNTEEFH 47 (151)
Q Consensus 19 ~~GHi--~l~Lak~La~~G~~VT~v~t~~~~ 47 (151)
..|+- ..++++.|.+.|++|++++.....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 43 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWG 43 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCC
Confidence 35666 999999999999999999876544
No 105
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=41.92 E-value=75 Score=24.11 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=26.9
Q ss_pred CCCCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 3 DRNSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 3 ~~~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
|+.+++..++++.- +-|-+...++++|+++|++|.++.
T Consensus 4 ~~~~~~~k~vlItG--a~g~iG~~ia~~l~~~G~~V~~~~ 41 (255)
T PRK07523 4 NLFDLTGRRALVTG--SSQGIGYALAEGLAQAGAEVILNG 41 (255)
T ss_pred cccCCCCCEEEEEC--CcchHHHHHHHHHHHcCCEEEEEe
Confidence 34445555655543 456679999999999999987764
No 106
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=41.84 E-value=25 Score=27.24 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=27.1
Q ss_pred HHHHhCCceEEEeccchHHHHHHHhHHHHHhcCCccCCCCCCcccccccC
Q 048768 101 VARVVGISIFYFRTIRACAFWAYYCIPQIIDAGELPIRALNSKGFVSTKS 150 (151)
Q Consensus 101 vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~ 150 (151)
--+++|+|.|+|...|.-+.-+++-.. +.|.+- +--.||.|||+
T Consensus 114 ~wk~~g~~vyiYSSGSV~AQkL~Fghs---~agdL~---~lfsGyfDtti 157 (229)
T COG4229 114 RWKALGMRVYIYSSGSVKAQKLFFGHS---DAGDLN---SLFSGYFDTTI 157 (229)
T ss_pred HHHHcCCcEEEEcCCCchhHHHhhccc---ccccHH---hhhcceeeccc
Confidence 345789999999999876655543211 223221 22388888874
No 107
>PRK09135 pteridine reductase; Provisional
Probab=41.80 E-value=78 Score=23.61 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=25.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 7 VSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
|...++++.- +-|.+.-+++++|+++|++|..+.
T Consensus 4 ~~~~~vlItG--a~g~iG~~l~~~l~~~g~~v~~~~ 37 (249)
T PRK09135 4 DSAKVALITG--GARRIGAAIARTLHAAGYRVAIHY 37 (249)
T ss_pred CCCCEEEEeC--CCchHHHHHHHHHHHCCCEEEEEc
Confidence 4444555544 568888899999999999998775
No 108
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=40.86 E-value=50 Score=28.60 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=25.2
Q ss_pred eEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 11 YVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 11 hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
.|+++ |-||.-+++|..|+.+|++|+++.
T Consensus 4 dVvVI---GGGlAGleAAlaLAr~Gl~V~LiE 32 (436)
T PRK05335 4 PVNVI---GAGLAGSEAAWQLAKRGVPVELYE 32 (436)
T ss_pred cEEEE---CCCHHHHHHHHHHHhCCCcEEEEE
Confidence 46666 789998899999999999999996
No 109
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=39.97 E-value=94 Score=23.01 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=25.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 7 VSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
|+...+++.- +.|.+..++++.|+++|.+|+.+..
T Consensus 3 ~~~~~ilItG--asg~iG~~l~~~l~~~g~~v~~~~r 37 (246)
T PRK05653 3 LQGKTALVTG--ASRGIGRAIALRLAADGAKVVIYDS 37 (246)
T ss_pred CCCCEEEEEC--CCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4433455443 4688889999999999999877654
No 110
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=39.78 E-value=85 Score=19.96 Aligned_cols=33 Identities=27% Similarity=0.234 Sum_probs=25.9
Q ss_pred eEEEEcCCCh--hHH--HHHHHHHHHhCCCEEEEEeC
Q 048768 11 YVLIWPLAAL--GHV--MLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 11 hvv~vP~p~~--GHi--~l~Lak~La~~G~~VT~v~t 43 (151)
.|+++|.... .+. .+++++.|-+.|++|-+-..
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 5889998752 455 99999999999999987543
No 111
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=39.40 E-value=57 Score=24.85 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=23.2
Q ss_pred hhHH--HHHHHHHHHhCCCEEEEEeCCCch
Q 048768 20 LGHV--MLKLAELLCNAGVKITFLNTEEFH 47 (151)
Q Consensus 20 ~GHi--~l~Lak~La~~G~~VT~v~t~~~~ 47 (151)
-|+- +.++++.|.+.|+.|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~ 43 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGG 43 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCC
Confidence 4555 999999999999999999875443
No 112
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=39.34 E-value=61 Score=23.65 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeCCCchhHH
Q 048768 8 SYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNTEEFHDRL 50 (151)
Q Consensus 8 ~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t~~~~~~~ 50 (151)
+..+|+++ |-|.+..+.++.|.+.|.+||++. +...+.+
T Consensus 12 ~~~~vlVv---GGG~va~rka~~Ll~~ga~V~VIs-p~~~~~l 50 (157)
T PRK06719 12 HNKVVVII---GGGKIAYRKASGLKDTGAFVTVVS-PEICKEM 50 (157)
T ss_pred CCCEEEEE---CCCHHHHHHHHHHHhCCCEEEEEc-CccCHHH
Confidence 34466665 578888899999999999999995 4444443
No 113
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=38.61 E-value=1.1e+02 Score=23.58 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=34.3
Q ss_pred CCCeEEEEcCCChhHH-HHHHH-HHHHhCCCEEEEEeCCCchhHHhhh
Q 048768 8 SYPYVLIWPLAALGHV-MLKLA-ELLCNAGVKITFLNTEEFHDRLIRH 53 (151)
Q Consensus 8 ~~~hvv~vP~p~~GHi-~l~La-k~La~~G~~VT~v~t~~~~~~~~~~ 53 (151)
.+++|++...++-.|- -+.+. ..|..+|++|+++-..-..+.+...
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~ 134 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEA 134 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHH
Confidence 4578999999999999 55554 5555689999999766666555544
No 114
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=38.48 E-value=31 Score=25.90 Aligned_cols=25 Identities=32% Similarity=0.390 Sum_probs=20.4
Q ss_pred ChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 19 ALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 19 ~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
|.||+.+-+|..|+++|++|+-+-.
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~ 31 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDI 31 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeC
Confidence 8899999999999999999998844
No 115
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=38.34 E-value=58 Score=20.30 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=25.3
Q ss_pred cccchHHHHHHHhCCceEEEeccchHHHHHHHhHHHHHhcCCcc
Q 048768 93 GFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQIIDAGELP 136 (151)
Q Consensus 93 ~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~~~g~~~ 136 (151)
.+.+-..++|+.+|+. +.-++..|+-.|.++|++-
T Consensus 23 G~~Pt~rEIa~~~g~~---------S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 23 GYPPTVREIAEALGLK---------STSTVQRHLKALERKGYIR 57 (65)
T ss_dssp SS---HHHHHHHHTSS---------SHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHhCCC---------ChHHHHHHHHHHHHCcCcc
Confidence 3556678999999983 2345778899999999985
No 116
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=38.12 E-value=27 Score=22.43 Aligned_cols=22 Identities=32% Similarity=0.217 Sum_probs=16.3
Q ss_pred ccccchHHHHHHHhCCceEEEe
Q 048768 92 NGFMSFAIDVARVVGISIFYFR 113 (151)
Q Consensus 92 D~~~~w~~~vA~~lgIP~v~f~ 113 (151)
....+-+.-+|+++|||.++=.
T Consensus 39 Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 39 GGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp SSTTSHHHHHHHHTT-EEEEST
T ss_pred CCccchHHHHHHHcCCCEEEee
Confidence 3455678999999999998643
No 117
>PLN02946 cysteine-tRNA ligase
Probab=38.04 E-value=1.1e+02 Score=27.46 Aligned_cols=58 Identities=10% Similarity=-0.038 Sum_probs=36.3
Q ss_pred cccccchHHHHHHHhCC-ceEEEeccchHHHHHHHhHHHHHhcCCccCCCCCCcccccccC
Q 048768 91 WNGFMSFAIDVARVVGI-SIFYFRTIRACAFWAYYCIPQIIDAGELPIRALNSKGFVSTKS 150 (151)
Q Consensus 91 ~D~~~~w~~~vA~~lgI-P~v~f~t~~A~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~ 150 (151)
+|.+..--.+..+.||| +..++-..+-..-.+...+..|+++|+.=. .+.++|-|+++
T Consensus 147 a~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i~~Li~kG~aY~--~~g~VYFdv~~ 205 (557)
T PLN02946 147 SRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIKQILDNGCAYR--VDGDVYFSVDK 205 (557)
T ss_pred HHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHHHHHHHCCCEEE--ECCeEEEecCc
Confidence 33343334456678888 444445555555666677888999998742 23478888765
No 118
>PRK00654 glgA glycogen synthase; Provisional
Probab=37.89 E-value=38 Score=28.87 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=23.9
Q ss_pred EcCCChhHH---HHHHHHHHHhCCCEEEEEeCC
Q 048768 15 WPLAALGHV---MLKLAELLCNAGVKITFLNTE 44 (151)
Q Consensus 15 vP~p~~GHi---~l~Lak~La~~G~~VT~v~t~ 44 (151)
.|+.-.|=+ .-.|++.|+++|++|+++++.
T Consensus 11 ~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 11 APLIKTGGLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred ccCcccCcHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 455445555 889999999999999999864
No 119
>PRK09620 hypothetical protein; Provisional
Probab=37.82 E-value=56 Score=25.51 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.3
Q ss_pred CChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 18 AALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 18 p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
...|-+..++|+.|.++|+.||++..
T Consensus 26 ~SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 26 MAKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CCcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 45688889999999999999999864
No 120
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=37.70 E-value=84 Score=23.60 Aligned_cols=118 Identities=12% Similarity=0.091 Sum_probs=64.3
Q ss_pred eEEEEcCCChhHH-HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEE-cCC-CCC-CCCC-----
Q 048768 11 YVLIWPLAALGHV-MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKT-ITD-RLP-LNHP----- 81 (151)
Q Consensus 11 hvv~vP~p~~GHi-~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~-lpd-~lp-~~~~----- 81 (151)
+|++.=.-+.|=+ ..++.++|.++|++|.++.|+.-.+-+....-.. ..+-++.. ... ..+ ...+
T Consensus 3 ~Ill~vtGsiaa~~~~~li~~L~~~g~~V~vv~T~~A~~fi~~~~l~~------l~~~~v~~~~~~~~~~~~~~hi~l~~ 76 (182)
T PRK07313 3 NILLAVSGSIAAYKAADLTSQLTKRGYQVTVLMTKAATKFITPLTLQV------LSKNPVHLDVMDEHDPKLMNHIELAK 76 (182)
T ss_pred EEEEEEeChHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHcCHHHHHH------HhCCceEeccccccccCCcccccccc
Confidence 4666655556666 9999999999999999999876543322110000 01111110 000 000 0000
Q ss_pred --------cCccc-hhh----hcccccchHHHHHHHhCCceEEEeccchHH---HHHHHhHHHHHhcCCc
Q 048768 82 --------RISDK-LHE----YWNGFMSFAIDVARVVGISIFYFRTIRACA---FWAYYCIPQIIDAGEL 135 (151)
Q Consensus 82 --------~~~~~-~~~----l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~---~~~~~~~p~l~~~g~~ 135 (151)
+.+.+ +.+ +.|-+..-+. +|-+.+.|.+++-..+..+ -...-++-+|.+.|..
T Consensus 77 ~aD~~vIaPaTantlakiA~GiaDnllt~~~-~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ 145 (182)
T PRK07313 77 RADLFLVAPATANTIAKLAHGIADDLVTSVA-LALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQ 145 (182)
T ss_pred ccCEEEEeeCCHhHHHHHHccccCcHHHHHH-HHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCE
Confidence 00111 012 3888776333 6655599999887655432 3345678889999974
No 121
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=37.38 E-value=1.1e+02 Score=22.86 Aligned_cols=37 Identities=8% Similarity=0.031 Sum_probs=26.2
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 4 RNSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 4 ~~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
|.+|+..++++.- +-|-+...+|++|+++|.+|+++.
T Consensus 1 ~~~~~~~~~lItG--~s~~iG~~la~~l~~~g~~v~~~~ 37 (247)
T PRK12935 1 MVQLNGKVAIVTG--GAKGIGKAITVALAQEGAKVVINY 37 (247)
T ss_pred CCCCCCCEEEEEC--CCCHHHHHHHHHHHHcCCEEEEEc
Confidence 3445554555433 457778999999999999998654
No 122
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=37.21 E-value=66 Score=26.20 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=25.0
Q ss_pred eEEEEcC-CChhHH--HHHHHHHHHhCCCEEEEEe
Q 048768 11 YVLIWPL-AALGHV--MLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 11 hvv~vP~-p~~GHi--~l~Lak~La~~G~~VT~v~ 42 (151)
+|+++.. -+.||. ...|++.|.++|+.+.++.
T Consensus 6 rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~ 40 (380)
T PRK13609 6 KVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVC 40 (380)
T ss_pred eEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 5776665 455999 9999999999998766653
No 123
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=37.19 E-value=1.8e+02 Score=23.18 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCch
Q 048768 24 MLKLAELLCNAGVKITFLNTEEFH 47 (151)
Q Consensus 24 ~l~Lak~La~~G~~VT~v~t~~~~ 47 (151)
.-+++++|.++|++|+..+.....
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~ 35 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEG 35 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCc
Confidence 567888999999998887654443
No 124
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=37.18 E-value=56 Score=28.39 Aligned_cols=38 Identities=26% Similarity=0.460 Sum_probs=31.7
Q ss_pred EEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHH
Q 048768 12 VLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRL 50 (151)
Q Consensus 12 vv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~ 50 (151)
+++===|+-|-- +||++.+|+++| +|-|++.+....++
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qi 135 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQI 135 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHH
Confidence 444445888988 999999999999 99999999887664
No 125
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=36.62 E-value=90 Score=20.97 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=27.0
Q ss_pred EEEEcCCChhHH-HHHHHHHHHhCCCEEEEEeCCCch
Q 048768 12 VLIWPLAALGHV-MLKLAELLCNAGVKITFLNTEEFH 47 (151)
Q Consensus 12 vv~vP~p~~GHi-~l~Lak~La~~G~~VT~v~t~~~~ 47 (151)
||+++-.+..-- +..+++.|+++|+.|..+..+.+.
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~ 38 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYPGHG 38 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCTTST
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence 566666655544 889999999999999888655443
No 126
>PRK08265 short chain dehydrogenase; Provisional
Probab=36.15 E-value=1e+02 Score=23.62 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=25.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 4 RNSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 4 ~~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
|.+|+...+ +|.- +-|.+-.+++++|+++|.+|+++.
T Consensus 1 m~~~~~k~v-lItG-as~gIG~~ia~~l~~~G~~V~~~~ 37 (261)
T PRK08265 1 MIGLAGKVA-IVTG-GATLIGAAVARALVAAGARVAIVD 37 (261)
T ss_pred CCCCCCCEE-EEEC-CCChHHHHHHHHHHHCCCEEEEEe
Confidence 344554444 4433 446678999999999999988774
No 127
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=35.86 E-value=96 Score=23.41 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=29.6
Q ss_pred EEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCC
Q 048768 12 VLIWPLAALGHV--MLKLAELLCNAGVKITFLNTE 44 (151)
Q Consensus 12 vv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~ 44 (151)
+.+.--|+.|-. .++++...+..|.+|.|+.++
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 466777999998 999999999999999999998
No 128
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=35.77 E-value=1.3e+02 Score=21.66 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=33.2
Q ss_pred EEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhh
Q 048768 12 VLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIR 52 (151)
Q Consensus 12 vv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~ 52 (151)
+++.=-|+.|=. .++++...+..|.+|.|++++...+.+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIE 44 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHH
Confidence 455666788877 99999999999999999999887766543
No 129
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=35.74 E-value=54 Score=20.27 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCCCEEEEEeC
Q 048768 24 MLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 24 ~l~Lak~La~~G~~VT~v~t 43 (151)
-|..|..|+++|++||++=.
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~ 27 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEK 27 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEES
T ss_pred HHHHHHHHHHCCCcEEEEec
Confidence 56778999999999999943
No 130
>PRK05973 replicative DNA helicase; Provisional
Probab=35.27 E-value=1e+02 Score=24.24 Aligned_cols=42 Identities=21% Similarity=0.167 Sum_probs=35.3
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhh
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIR 52 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~ 52 (151)
=+++.--||.|=. ++|++...+.+|.+|.|++.+...+.+..
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~ 109 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRD 109 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHH
Confidence 3667777999999 99999999999999999999887765543
No 131
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=35.12 E-value=1.1e+02 Score=23.33 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=28.0
Q ss_pred CCCCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 3 DRNSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 3 ~~~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
|-.+++...+++.- +-|-+..+++++|+++|++|+.+..
T Consensus 6 ~~~~~~~k~ilItG--a~g~IG~~la~~l~~~G~~V~~~~r 44 (259)
T PRK08213 6 ELFDLSGKTALVTG--GSRGLGLQIAEALGEAGARVVLSAR 44 (259)
T ss_pred hhhCcCCCEEEEEC--CCchHHHHHHHHHHHcCCEEEEEeC
Confidence 33445555666653 5677788999999999999876643
No 132
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=34.93 E-value=1.3e+02 Score=22.55 Aligned_cols=39 Identities=23% Similarity=0.429 Sum_probs=32.2
Q ss_pred CCCCCCCeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEe
Q 048768 4 RNSVSYPYVLIWPLAALGHV--MLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 4 ~~~m~~~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~ 42 (151)
|+.|..+-+.++=+.+.|=. +-.+.++|..+|++|-.+-
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik 41 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEE
Confidence 67777777788888999999 7888899999998887663
No 133
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=34.85 E-value=1.3e+02 Score=23.34 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=32.8
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhC-CCEEEEEeCCCchhHH
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNA-GVKITFLNTEEFHDRL 50 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~-G~~VT~v~t~~~~~~~ 50 (151)
=+++--.|+.|-. ++++|..++.+ |..|-|++.+-...++
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l 63 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEEL 63 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHH
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHH
Confidence 3677788999999 99999999987 6999999998766543
No 134
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=34.76 E-value=50 Score=19.12 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=26.0
Q ss_pred hHHHHHHHhCCceEEEeccchHHHHHHHhHHHHHhcCCccCCCCCCccc
Q 048768 97 FAIDVARVVGISIFYFRTIRACAFWAYYCIPQIIDAGELPIRALNSKGF 145 (151)
Q Consensus 97 w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~~~g~~~~~~~~~~~~ 145 (151)
-+.++|++|||- --.+.-++-.|.+.| ++....+.+||
T Consensus 17 t~~eLa~~l~vS----------~rTi~~~i~~L~~~~-~~I~~~~~~GY 54 (55)
T PF08279_consen 17 TAKELAEELGVS----------RRTIRRDIKELREWG-IPIESKRGKGY 54 (55)
T ss_dssp EHHHHHHHCTS-----------HHHHHHHHHHHHHTT--EEEEETTTEE
T ss_pred CHHHHHHHhCCC----------HHHHHHHHHHHHHCC-CeEEeeCCCCc
Confidence 478899999773 345777888888888 55555555676
No 135
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.66 E-value=1.1e+02 Score=23.64 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=26.0
Q ss_pred CCCCCCCeEEEEcCC-ChhHHHHHHHHHHHhCCCEEEEE
Q 048768 4 RNSVSYPYVLIWPLA-ALGHVMLKLAELLCNAGVKITFL 41 (151)
Q Consensus 4 ~~~m~~~hvv~vP~p-~~GHi~l~Lak~La~~G~~VT~v 41 (151)
|..|+.. +++|.-. +-+-|-..+|++|+++|.+|.+.
T Consensus 1 ~~~~~~k-~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~ 38 (261)
T PRK08690 1 MGFLQGK-KILITGMISERSIAYGIAKACREQGAELAFT 38 (261)
T ss_pred CCccCCc-EEEEECCCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 4456544 4555554 34567889999999999998775
No 136
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=34.64 E-value=1.2e+02 Score=22.93 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=26.4
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 4 RNSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 4 ~~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
|..|+...+++. -+.|.+..+++++|+++|.+|.++..
T Consensus 2 ~~~~~~~~vlIt--Gasg~iG~~la~~l~~~G~~v~~~~r 39 (262)
T PRK13394 2 MSNLNGKTAVVT--GAASGIGKEIALELARAGAAVAIADL 39 (262)
T ss_pred cccCCCCEEEEE--CCCChHHHHHHHHHHHCCCeEEEEeC
Confidence 444554444433 34578888999999999999877643
No 137
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=34.57 E-value=1e+02 Score=26.23 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=29.9
Q ss_pred CCCCCeEEEEcCC--------------ChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 6 SVSYPYVLIWPLA--------------ALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 6 ~m~~~hvv~vP~p--------------~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
+++..+|++-.-| ..|.+...+|+.|..+|.+|+++..
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g 233 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITG 233 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCC
Confidence 3566677666655 5688888899999999999999864
No 138
>PRK07236 hypothetical protein; Provisional
Probab=34.07 E-value=76 Score=26.07 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=27.5
Q ss_pred CCCCCCCeEEEEcCCChhHH-HHHHHHHHHhCCCEEEEEe
Q 048768 4 RNSVSYPYVLIWPLAALGHV-MLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 4 ~~~m~~~hvv~vP~p~~GHi-~l~Lak~La~~G~~VT~v~ 42 (151)
|-.|+..+|+++= -| + -+.+|..|+++|++||++-
T Consensus 1 ~~~~~~~~ViIVG---aG-~aGl~~A~~L~~~G~~v~v~E 36 (386)
T PRK07236 1 MTHMSGPRAVVIG---GS-LGGLFAALLLRRAGWDVDVFE 36 (386)
T ss_pred CCCCCCCeEEEEC---CC-HHHHHHHHHHHhCCCCEEEEe
Confidence 4567778888874 33 5 7888999999999999984
No 139
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=34.02 E-value=1.2e+02 Score=22.91 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=25.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 7 VSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
++...+++. -+-|.+...++++|+++|++|.++..
T Consensus 9 ~~~k~ilIt--Gas~~IG~~la~~l~~~G~~v~~~~r 43 (256)
T PRK06124 9 LAGQVALVT--GSARGLGFEIARALAGAGAHVLVNGR 43 (256)
T ss_pred CCCCEEEEE--CCCchHHHHHHHHHHHcCCeEEEEeC
Confidence 333445443 36788888999999999999888744
No 140
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=33.78 E-value=82 Score=21.87 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=27.1
Q ss_pred eEEEEcCCChhHH-HHHHHHHHHhCCCEEEEEeCCCchhH
Q 048768 11 YVLIWPLAALGHV-MLKLAELLCNAGVKITFLNTEEFHDR 49 (151)
Q Consensus 11 hvv~vP~p~~GHi-~l~Lak~La~~G~~VT~v~t~~~~~~ 49 (151)
+|++.=.-+.+=. ..++.++|.++|++|.++.|+.-.+-
T Consensus 2 ~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~S~~A~~~ 41 (129)
T PF02441_consen 2 RILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVLSPSAERF 41 (129)
T ss_dssp EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEESHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHhhCCCEEEEEECCcHHHH
Confidence 3444433333333 89999999999999999998766543
No 141
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=33.70 E-value=29 Score=23.99 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=18.2
Q ss_pred cCCChhHH--HHHHHHHHHhCCCE
Q 048768 16 PLAALGHV--MLKLAELLCNAGVK 37 (151)
Q Consensus 16 P~p~~GHi--~l~Lak~La~~G~~ 37 (151)
-+|++|++ -.+|++++.+.|+.
T Consensus 78 i~pGyg~lse~~~fa~~~~~~gi~ 101 (110)
T PF00289_consen 78 IHPGYGFLSENAEFAEACEDAGII 101 (110)
T ss_dssp EESTSSTTTTHHHHHHHHHHTT-E
T ss_pred cccccchhHHHHHHHHHHHHCCCE
Confidence 36899999 99999999988753
No 142
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=33.36 E-value=1e+02 Score=26.18 Aligned_cols=121 Identities=10% Similarity=0.052 Sum_probs=65.5
Q ss_pred CCCCeEEEEcCCChhHH-HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcCCC-CCCCC-Cc-
Q 048768 7 VSYPYVLIWPLAALGHV-MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTITDR-LPLNH-PR- 82 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi-~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd~-lp~~~-~~- 82 (151)
|++.+|++.=.-+.|=. ..++.++|.+.|++|.++.|+.-.+-+....-..... .+ + +...-+. .+... +-
T Consensus 4 l~~k~IllgvTGsiaa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~~l~~l~~---~~-V-~~~~~~~~~~~~~~hi~ 78 (399)
T PRK05579 4 LAGKRIVLGVSGGIAAYKALELVRRLRKAGADVRVVMTEAAKKFVTPLTFQALSG---NP-V-STDLWDPAAEAAMGHIE 78 (399)
T ss_pred CCCCeEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhHHHHHHhhC---Cc-e-EccccccccCCCcchhh
Confidence 44557776655555555 9999999999999999999986554332211011010 00 1 1110000 00000 00
Q ss_pred --Cccch-----------hh----hcccccchHHHHHHHhCCceEEEeccchHHH---HHHHhHHHHHhcCCc
Q 048768 83 --ISDKL-----------HE----YWNGFMSFAIDVARVVGISIFYFRTIRACAF---WAYYCIPQIIDAGEL 135 (151)
Q Consensus 83 --~~~~~-----------~~----l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~---~~~~~~p~l~~~g~~ 135 (151)
...|. .+ ++|-+.+-+ +...+.|.+++-..+-.+. +..-++-.|.+.|..
T Consensus 79 l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~---~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ 148 (399)
T PRK05579 79 LAKWADLVLIAPATADLIAKLAHGIADDLLTTT---LLATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVE 148 (399)
T ss_pred cccccCEEEEeeCCHHHHHHHHcccCCcHHHHH---HHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCE
Confidence 00111 12 377775543 3344999999886664433 356678889998875
No 143
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=32.75 E-value=94 Score=24.10 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=26.6
Q ss_pred EEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 12 VLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 12 vv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
|=++-=++.|-+..+||++|+++|++||++..
T Consensus 17 VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 17 VRGITNHSTGQLGKIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred ceeecCccchHHHHHHHHHHHhCCCEEEEEEC
Confidence 44566677888888999999999999999863
No 144
>PRK06398 aldose dehydrogenase; Validated
Probab=32.61 E-value=1.3e+02 Score=23.09 Aligned_cols=37 Identities=5% Similarity=-0.012 Sum_probs=25.5
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 4 RNSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 4 ~~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
|.+|+...+++. - +-|-+..++|++|+++|++|.++.
T Consensus 1 ~~~l~gk~vlIt-G-as~gIG~~ia~~l~~~G~~Vi~~~ 37 (258)
T PRK06398 1 DLGLKDKVAIVT-G-GSQGIGKAVVNRLKEEGSNVINFD 37 (258)
T ss_pred CCCCCCCEEEEE-C-CCchHHHHHHHHHHHCCCeEEEEe
Confidence 345554444443 2 456668899999999999988764
No 145
>PRK06500 short chain dehydrogenase; Provisional
Probab=32.29 E-value=1.2e+02 Score=22.71 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=25.4
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 4 RNSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 4 ~~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
|.+|+..++++ .-+-|-+-..++++|+++|.+|.++.
T Consensus 1 m~~~~~k~vlI--tGasg~iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK06500 1 MSRLQGKTALI--TGGTSGIGLETARQFLAEGARVAITG 37 (249)
T ss_pred CCCCCCCEEEE--eCCCchHHHHHHHHHHHCCCEEEEec
Confidence 34555544444 33456778889999999999987664
No 146
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=32.10 E-value=65 Score=20.87 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhHHh
Q 048768 24 MLKLAELLCNAGVKITFLNTEEFHDRLI 51 (151)
Q Consensus 24 ~l~Lak~La~~G~~VT~v~t~~~~~~~~ 51 (151)
++++++.|.+.|+++ +.|+...+.+.
T Consensus 2 ~~~~~~~l~~lG~~i--~AT~gTa~~L~ 27 (90)
T smart00851 2 LVELAKRLAELGFEL--VATGGTAKFLR 27 (90)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHH
Confidence 468899999999886 56666665543
No 147
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=31.92 E-value=97 Score=23.65 Aligned_cols=54 Identities=26% Similarity=0.421 Sum_probs=36.4
Q ss_pred CCeEEEE-cCCChhHHHHHHHHHHHhCCC---EEEEE---eCCCchhHHhhhccccccccCCCCCceEEEc
Q 048768 9 YPYVLIW-PLAALGHVMLKLAELLCNAGV---KITFL---NTEEFHDRLIRHRSDVFSRCINLPGFQFKTI 72 (151)
Q Consensus 9 ~~hvv~v-P~p~~GHi~l~Lak~La~~G~---~VT~v---~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 72 (151)
..+|+++ |.-+-|.-++...+.|.++|. +|+++ .++.-.+++.+. +|++++.+.
T Consensus 121 ~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ias~~Gl~~l~~~----------~P~v~I~ta 181 (207)
T PF14681_consen 121 NRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSVIASPEGLERLLKA----------FPDVRIYTA 181 (207)
T ss_dssp TSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEEEEEHHHHHHHHHH----------STTSEEEEE
T ss_pred CCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEEEecHHHHHHHHHh----------CCCeEEEEE
Confidence 3466666 889999998888889999886 45554 444444444332 677887654
No 148
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=31.87 E-value=1.4e+02 Score=22.15 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=24.8
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 5 NSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 5 ~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
.+|+..++++. -+-|.+..+++++|+++|..|+...
T Consensus 2 ~~~~~~~vlIt--Ga~g~iG~~la~~l~~~g~~v~~~~ 37 (245)
T PRK12936 2 FDLSGRKALVT--GASGGIGEEIARLLHAQGAIVGLHG 37 (245)
T ss_pred cCCCCCEEEEE--CCCChHHHHHHHHHHHCCCEEEEEc
Confidence 34555555544 2346668899999999999877653
No 149
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=31.85 E-value=49 Score=21.78 Aligned_cols=26 Identities=27% Similarity=0.301 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhHHh
Q 048768 24 MLKLAELLCNAGVKITFLNTEEFHDRLI 51 (151)
Q Consensus 24 ~l~Lak~La~~G~~VT~v~t~~~~~~~~ 51 (151)
++++||+|.+.|++ ++.|+...+.+.
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~ 27 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLK 27 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHH
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHH
Confidence 57899999999965 677777776654
No 150
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=31.73 E-value=1.4e+02 Score=19.01 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=22.0
Q ss_pred ChhHHHHHHHHHHHhCC---CEEEEEeCC
Q 048768 19 ALGHVMLKLAELLCNAG---VKITFLNTE 44 (151)
Q Consensus 19 ~~GHi~l~Lak~La~~G---~~VT~v~t~ 44 (151)
|.|++...|++.|.++| .+|++++..
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r 34 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSR 34 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEES
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccC
Confidence 78999888899999999 999987543
No 151
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=31.61 E-value=78 Score=22.64 Aligned_cols=26 Identities=35% Similarity=0.309 Sum_probs=22.3
Q ss_pred ChhHHHHHHHHHHHhCCCEEEEEeCC
Q 048768 19 ALGHVMLKLAELLCNAGVKITFLNTE 44 (151)
Q Consensus 19 ~~GHi~l~Lak~La~~G~~VT~v~t~ 44 (151)
+-|++.-.++++|.++|++|+.++-.
T Consensus 6 atG~vG~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 6 ATGFVGRALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp TTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCChHHHHHHHHHHHCCCEEEEEecC
Confidence 56888778999999999999999754
No 152
>PRK08264 short chain dehydrogenase; Validated
Probab=31.47 E-value=1.5e+02 Score=22.07 Aligned_cols=34 Identities=21% Similarity=0.067 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHHhCCC-EEEEEeC
Q 048768 8 SYPYVLIWPLAALGHVMLKLAELLCNAGV-KITFLNT 43 (151)
Q Consensus 8 ~~~hvv~vP~p~~GHi~l~Lak~La~~G~-~VT~v~t 43 (151)
+...+++.= +.|.+..++|++|+++|. +|..+..
T Consensus 5 ~~~~vlItG--gsg~iG~~la~~l~~~G~~~V~~~~r 39 (238)
T PRK08264 5 KGKVVLVTG--ANRGIGRAFVEQLLARGAAKVYAAAR 39 (238)
T ss_pred CCCEEEEEC--CCchHHHHHHHHHHHCCcccEEEEec
Confidence 333444432 578889999999999998 8877754
No 153
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=31.37 E-value=1.6e+02 Score=23.62 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=43.0
Q ss_pred HHHHHHHHHhCCCEEEEEeC-CCchhHHhhhccccccccCCCCCceEEEcCCCCCCCCCcCccchhhhcccccchHHHHH
Q 048768 24 MLKLAELLCNAGVKITFLNT-EEFHDRLIRHRSDVFSRCINLPGFQFKTITDRLPLNHPRISDKLHEYWNGFMSFAIDVA 102 (151)
Q Consensus 24 ~l~Lak~La~~G~~VT~v~t-~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd~lp~~~~~~~~~~~~l~D~~~~w~~~vA 102 (151)
.-.||++|.++|++|-.+++ +.+..++.+..... ....+++-+.-|+.+...+-+ ..-+|
T Consensus 23 a~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a------~~r~D~vI~tGGLGPT~DDiT-------------~e~vA 83 (255)
T COG1058 23 AAFLADELTELGVDLARITTVGDNPDRIVEALREA------SERADVVITTGGLGPTHDDLT-------------AEAVA 83 (255)
T ss_pred HHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHH------HhCCCEEEECCCcCCCccHhH-------------HHHHH
Confidence 56789999999999988855 56666666553311 112566666666654321111 45677
Q ss_pred HHhCCceEE
Q 048768 103 RVVGISIFY 111 (151)
Q Consensus 103 ~~lgIP~v~ 111 (151)
+-||.|.+.
T Consensus 84 ka~g~~lv~ 92 (255)
T COG1058 84 KALGRPLVL 92 (255)
T ss_pred HHhCCCccc
Confidence 777777664
No 154
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.15 E-value=1.3e+02 Score=23.18 Aligned_cols=36 Identities=8% Similarity=0.082 Sum_probs=25.4
Q ss_pred CCCCCCeEEEEcCC-ChhHHHHHHHHHHHhCCCEEEEE
Q 048768 5 NSVSYPYVLIWPLA-ALGHVMLKLAELLCNAGVKITFL 41 (151)
Q Consensus 5 ~~m~~~hvv~vP~p-~~GHi~l~Lak~La~~G~~VT~v 41 (151)
.+|+.. +++|.-. +-+-|-..+|++|+++|.+|.++
T Consensus 2 ~~l~~k-~vlItGas~~~GIG~a~a~~l~~~G~~v~~~ 38 (260)
T PRK06997 2 GFLAGK-RILITGLLSNRSIAYGIAKACKREGAELAFT 38 (260)
T ss_pred CccCCc-EEEEeCCCCCCcHHHHHHHHHHHCCCeEEEE
Confidence 345543 4555554 35567889999999999998775
No 155
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=31.13 E-value=1.3e+02 Score=18.84 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=25.0
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeC
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t 43 (151)
.|+++|+ ..++. .+++++.|-+.|++|.+-..
T Consensus 3 ~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~~ 36 (91)
T cd00860 3 QVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDLR 36 (91)
T ss_pred EEEEEee-CchHHHHHHHHHHHHHHCCCEEEEECC
Confidence 5677775 45677 99999999999999987543
No 156
>PRK12829 short chain dehydrogenase; Provisional
Probab=31.09 E-value=81 Score=23.88 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=25.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 7 VSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
|+..++++. -+.|.+...++++|+++|++|+.+.-
T Consensus 9 ~~~~~vlIt--Ga~g~iG~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 9 LDGLRVLVT--GGASGIGRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred cCCCEEEEe--CCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 444455544 23477788999999999999877754
No 157
>PRK09072 short chain dehydrogenase; Provisional
Probab=30.95 E-value=1.3e+02 Score=22.89 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=24.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 9 YPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 9 ~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
...+++. -+-|.+..+++++|+++|.+|+++..
T Consensus 5 ~~~vlIt--G~s~~iG~~ia~~l~~~G~~V~~~~r 37 (263)
T PRK09072 5 DKRVLLT--GASGGIGQALAEALAAAGARLLLVGR 37 (263)
T ss_pred CCEEEEE--CCCchHHHHHHHHHHHCCCEEEEEEC
Confidence 3344443 45577889999999999999888754
No 158
>PRK06179 short chain dehydrogenase; Provisional
Probab=30.90 E-value=1.2e+02 Score=23.15 Aligned_cols=31 Identities=23% Similarity=0.083 Sum_probs=23.3
Q ss_pred EEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 12 VLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 12 vv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
.++|.- +-|-+..+++++|+++|.+|+.+.-
T Consensus 6 ~vlVtG-asg~iG~~~a~~l~~~g~~V~~~~r 36 (270)
T PRK06179 6 VALVTG-ASSGIGRATAEKLARAGYRVFGTSR 36 (270)
T ss_pred EEEEec-CCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 344443 4577788999999999999887753
No 159
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=30.89 E-value=1.4e+02 Score=22.15 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=21.0
Q ss_pred ChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 19 ALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 19 ~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
+-|.+...+++.|+++|.+|+.+..
T Consensus 14 asg~iG~~l~~~l~~~g~~V~~~~r 38 (251)
T PRK12826 14 AARGIGRAIAVRLAADGAEVIVVDI 38 (251)
T ss_pred CCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 4678889999999999999877754
No 160
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=30.29 E-value=1.2e+02 Score=24.38 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=26.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeCCC
Q 048768 7 VSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t~~ 45 (151)
|++.+|.++ |-|=+..-+|.+|++.|+.||++.-..
T Consensus 3 ~~~m~I~Ii---G~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGII---GTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEE---CCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 334467777 677775667888999999999997543
No 161
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=30.19 E-value=85 Score=24.40 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=20.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCc
Q 048768 24 MLKLAELLCNAGVKITFLNTEEF 46 (151)
Q Consensus 24 ~l~Lak~La~~G~~VT~v~t~~~ 46 (151)
..+|++.|+++|+.|+++.....
T Consensus 19 ~~~l~~~L~~~g~~v~v~~~~~~ 41 (366)
T cd03822 19 TTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred HHHHHHHhhhcCCeEEEEEeecc
Confidence 99999999999999999976543
No 162
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.15 E-value=1.2e+02 Score=24.18 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=26.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 4 RNSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 4 ~~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
|++++ +|.++ |.|.+...+|..|+..|++|+++..
T Consensus 1 ~~~~~--~I~vI---GaG~mG~~iA~~l~~~g~~V~~~d~ 35 (311)
T PRK06130 1 MNPIQ--NLAII---GAGTMGSGIAALFARKGLQVVLIDV 35 (311)
T ss_pred CCCcc--EEEEE---CCCHHHHHHHHHHHhCCCeEEEEEC
Confidence 44554 35554 7899978888899999999999864
No 163
>PRK07576 short chain dehydrogenase; Provisional
Probab=29.97 E-value=1.4e+02 Score=22.91 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=26.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 6 SVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 6 ~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
+++..++++. -+-|.+..+++++|+++|++|..+.
T Consensus 6 ~~~~k~ilIt--GasggIG~~la~~l~~~G~~V~~~~ 40 (264)
T PRK07576 6 DFAGKNVVVV--GGTSGINLGIAQAFARAGANVAVAS 40 (264)
T ss_pred cCCCCEEEEE--CCCchHHHHHHHHHHHCCCEEEEEe
Confidence 3444566655 3577788999999999999987774
No 164
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=29.96 E-value=99 Score=20.22 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=31.6
Q ss_pred cccccchHHHHHHHhCCceEEEeccchHHHHHHHhHHHHHhcCCccCCCCCCcccc
Q 048768 91 WNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQIIDAGELPIRALNSKGFV 146 (151)
Q Consensus 91 ~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~~~g~~~~~~~~~~~~~ 146 (151)
.|.-.....++|++||+-+ .+++-|+..|.+.|+--.. ...+||.
T Consensus 15 ~~~~~~SGe~La~~LgiSR----------taVwK~Iq~Lr~~G~~I~s-~~~kGY~ 59 (79)
T COG1654 15 LTGNFVSGEKLAEELGISR----------TAVWKHIQQLREEGVDIES-VRGKGYL 59 (79)
T ss_pred cCCCcccHHHHHHHHCccH----------HHHHHHHHHHHHhCCceEe-cCCCcee
Confidence 3444455899999998755 5788999999999975332 2235664
No 165
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=29.62 E-value=44 Score=27.02 Aligned_cols=47 Identities=28% Similarity=0.347 Sum_probs=31.4
Q ss_pred CCCCCCCC----CCeEEEEcCCChhHH------HHHHHHHHHhCCCEEEEEeCCCch
Q 048768 1 LRDRNSVS----YPYVLIWPLAALGHV------MLKLAELLCNAGVKITFLNTEEFH 47 (151)
Q Consensus 1 ~~~~~~m~----~~hvv~vP~p~~GHi------~l~Lak~La~~G~~VT~v~t~~~~ 47 (151)
|-||.+|+ .+.|.+=|.|..||+ .-+..+.|-+.|+++.++-|-.--
T Consensus 77 LGDRiRM~~~~~d~~vfIRS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvG 133 (266)
T PF03308_consen 77 LGDRIRMQELSRDPGVFIRSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVG 133 (266)
T ss_dssp S--GGGCHHHHTSTTEEEEEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSS
T ss_pred cccHHHhcCcCCCCCEEEeecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 45888887 367999999999999 455566666789999999765543
No 166
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=29.21 E-value=1.1e+02 Score=21.79 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=27.4
Q ss_pred CCCCCCCCCCeEEEEcCCC--------------hhHHHHHHHHHHHh-----CCCEEEEE
Q 048768 1 LRDRNSVSYPYVLIWPLAA--------------LGHVMLKLAELLCN-----AGVKITFL 41 (151)
Q Consensus 1 ~~~~~~m~~~hvv~vP~p~--------------~GHi~l~Lak~La~-----~G~~VT~v 41 (151)
++|..+..+.|++++|=-= -|| .|..+|++++ +|++|..=
T Consensus 42 F~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~-ll~~~k~vak~~Gl~~gYrvv~N 100 (127)
T KOG3275|consen 42 FHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGH-LLPVAKKVAKALGLEDGYRVVQN 100 (127)
T ss_pred EEecCCCCCceEEEeecccccchhhcccCCHHHHHH-HHHHHHHHHHHhCcccceeEEEc
Confidence 3788999999999999532 122 5666777765 56776543
No 167
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=29.01 E-value=1e+02 Score=18.39 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=23.8
Q ss_pred HHHHHHHhCCceEEEeccchHHHHHHHhHHHHHhcCCccC
Q 048768 98 AIDVARVVGISIFYFRTIRACAFWAYYCIPQIIDAGELPI 137 (151)
Q Consensus 98 ~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~~~g~~~~ 137 (151)
+.++|+++|+|. -.+++|+..|.+.|.+-.
T Consensus 27 ~~ela~~l~~~~----------~t~s~hL~~L~~aGli~~ 56 (61)
T PF12840_consen 27 VSELAEELGISQ----------STVSYHLKKLEEAGLIEV 56 (61)
T ss_dssp HHHHHHHHTS-H----------HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHCCCH----------HHHHHHHHHHHHCCCeEE
Confidence 789999998663 347899999999998853
No 168
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.96 E-value=63 Score=23.09 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCEEEEEeC
Q 048768 24 MLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 24 ~l~Lak~La~~G~~VT~v~t 43 (151)
.+..|++|+++|+.|+.+-.
T Consensus 25 ~~~VA~~L~e~g~dv~atDI 44 (129)
T COG1255 25 FLDVAKRLAERGFDVLATDI 44 (129)
T ss_pred HHHHHHHHHHcCCcEEEEec
Confidence 78899999999999887643
No 169
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=28.92 E-value=2.4e+02 Score=21.40 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=21.3
Q ss_pred ChhHHHHHHHHHHHhCCCEEEEEeCC
Q 048768 19 ALGHVMLKLAELLCNAGVKITFLNTE 44 (151)
Q Consensus 19 ~~GHi~l~Lak~La~~G~~VT~v~t~ 44 (151)
+-|.+...++++|+++|++|.++...
T Consensus 23 as~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 23 GNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 35667899999999999999887554
No 170
>PRK07774 short chain dehydrogenase; Provisional
Probab=28.79 E-value=1.7e+02 Score=21.93 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=25.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 7 VSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
++...+++.- +.|-+..++++.|+++|.+|..+..
T Consensus 4 ~~~k~vlItG--asg~iG~~la~~l~~~g~~vi~~~r 38 (250)
T PRK07774 4 FDDKVAIVTG--AAGGIGQAYAEALAREGASVVVADI 38 (250)
T ss_pred cCCCEEEEEC--CCchHHHHHHHHHHHCCCEEEEEeC
Confidence 4444555543 5577788999999999999887754
No 171
>PRK05876 short chain dehydrogenase; Provisional
Probab=28.61 E-value=1.6e+02 Score=22.96 Aligned_cols=37 Identities=5% Similarity=0.020 Sum_probs=25.2
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 4 RNSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 4 ~~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
|..|+...+ +|-- +-|.+..++|++|+++|.+|.++.
T Consensus 1 ~~~~~~k~v-lVTG-as~gIG~ala~~La~~G~~Vv~~~ 37 (275)
T PRK05876 1 MDGFPGRGA-VITG-GASGIGLATGTEFARRGARVVLGD 37 (275)
T ss_pred CCCcCCCEE-EEeC-CCchHHHHHHHHHHHCCCEEEEEe
Confidence 345555444 4433 346678899999999999987653
No 172
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=28.58 E-value=89 Score=26.26 Aligned_cols=39 Identities=18% Similarity=0.046 Sum_probs=27.8
Q ss_pred HHHHHHHhCCceEEEeccchHHHHHHHhHHHHHhcCCcc
Q 048768 98 AIDVARVVGISIFYFRTIRACAFWAYYCIPQIIDAGELP 136 (151)
Q Consensus 98 ~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~~~g~~~ 136 (151)
+..||++||||.++..-...+.--++.++-.-..+|.-|
T Consensus 54 a~~va~~LgIp~~v~d~~~~f~~~Vi~~f~~~Y~~G~TP 92 (356)
T PF03054_consen 54 ARRVAEKLGIPHYVVDLREEFWEEVIEPFLDEYRKGRTP 92 (356)
T ss_dssp HHHHHHHHT--EEEEETHHHHHHHTHHHHHHHHHTT---
T ss_pred HHHHHHhcCCCEEEEChHHHHHHHHHHHHHHHHhcCCCC
Confidence 889999999999999998888777776665556677655
No 173
>PRK05866 short chain dehydrogenase; Provisional
Probab=28.26 E-value=1.8e+02 Score=22.99 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=20.2
Q ss_pred ChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 19 ALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 19 ~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
+-|.+..++|++|+++|++|.++.
T Consensus 48 asggIG~~la~~La~~G~~Vi~~~ 71 (293)
T PRK05866 48 ASSGIGEAAAEQFARRGATVVAVA 71 (293)
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEE
Confidence 457778999999999999987764
No 174
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=28.14 E-value=1.1e+02 Score=21.65 Aligned_cols=36 Identities=22% Similarity=0.089 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCChhHH--HHHHHHHHHhCCC-EEEEEeC
Q 048768 8 SYPYVLIWPLAALGHV--MLKLAELLCNAGV-KITFLNT 43 (151)
Q Consensus 8 ~~~hvv~vP~p~~GHi--~l~Lak~La~~G~-~VT~v~t 43 (151)
.+++++.+.....+|. +-++.++|.++|. ++.++.-
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 3678999999999999 8899999998886 5666654
No 175
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=27.51 E-value=1e+02 Score=22.04 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=17.6
Q ss_pred CCCCCCCCCeEEEEcCCChhHH
Q 048768 2 RDRNSVSYPYVLIWPLAALGHV 23 (151)
Q Consensus 2 ~~~~~m~~~hvv~vP~p~~GHi 23 (151)
.|..+....|++++|-.-...+
T Consensus 28 ld~~P~~~gH~LviPk~h~~~l 49 (138)
T COG0537 28 LDIYPAAPGHTLVIPKRHVSDL 49 (138)
T ss_pred ecCCCCCCCeEEEEeccchhhh
Confidence 5778888999999999655555
No 176
>PRK12742 oxidoreductase; Provisional
Probab=27.32 E-value=1.8e+02 Score=21.52 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=24.6
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 5 NSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 5 ~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
.+|+...+++. -+-|-+..+++++|+++|.+|.++.
T Consensus 2 ~~~~~k~vlIt--GasggIG~~~a~~l~~~G~~v~~~~ 37 (237)
T PRK12742 2 GAFTGKKVLVL--GGSRGIGAAIVRRFVTDGANVRFTY 37 (237)
T ss_pred CCCCCCEEEEE--CCCChHHHHHHHHHHHCCCEEEEec
Confidence 34544444443 3456668889999999999987653
No 177
>PRK06182 short chain dehydrogenase; Validated
Probab=27.31 E-value=1.6e+02 Score=22.57 Aligned_cols=33 Identities=15% Similarity=-0.015 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 8 SYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 8 ~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
+...+++.- +-|.+..+++++|+++|++|..+.
T Consensus 2 ~~k~vlItG--asggiG~~la~~l~~~G~~V~~~~ 34 (273)
T PRK06182 2 QKKVALVTG--ASSGIGKATARRLAAQGYTVYGAA 34 (273)
T ss_pred CCCEEEEEC--CCChHHHHHHHHHHHCCCEEEEEe
Confidence 334444432 456678899999999999988764
No 178
>PRK12827 short chain dehydrogenase; Provisional
Probab=27.16 E-value=1.8e+02 Score=21.64 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=24.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 7 VSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
++...+++. -+.|.+..++|++|+++|++|+++.
T Consensus 4 ~~~~~ilIt--Gasg~iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 4 LDSRRVLIT--GGSGGLGRAIAVRLAADGADVIVLD 37 (249)
T ss_pred cCCCEEEEE--CCCChHHHHHHHHHHHCCCeEEEEc
Confidence 333344443 2456778899999999999988764
No 179
>PRK14099 glycogen synthase; Provisional
Probab=26.95 E-value=1.4e+02 Score=25.90 Aligned_cols=38 Identities=26% Similarity=0.227 Sum_probs=29.1
Q ss_pred CCCCeEEEE-----cCCChhHH---HHHHHHHHHhCCCEEEEEeCC
Q 048768 7 VSYPYVLIW-----PLAALGHV---MLKLAELLCNAGVKITFLNTE 44 (151)
Q Consensus 7 m~~~hvv~v-----P~p~~GHi---~l~Lak~La~~G~~VT~v~t~ 44 (151)
|.+.+||++ ||.=.|=+ +=.|.+.|+++|++|.++.+-
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 444566665 66656666 889999999999999998774
No 180
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.76 E-value=2.2e+02 Score=21.19 Aligned_cols=34 Identities=12% Similarity=0.019 Sum_probs=24.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 7 VSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
|+...+++.- +-|.+...++++|+++|++|.+..
T Consensus 4 ~~~~~vlitG--asg~iG~~l~~~l~~~g~~v~~~~ 37 (252)
T PRK06077 4 LKDKVVVVTG--SGRGIGRAIAVRLAKEGSLVVVNA 37 (252)
T ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHCCCEEEEEe
Confidence 3444454443 567778999999999999987654
No 181
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=26.72 E-value=1.8e+02 Score=21.93 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.2
Q ss_pred ChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 19 ALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 19 ~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
+-|-+..++|++|+++|.+|..+.
T Consensus 14 as~~iG~~ia~~l~~~G~~v~~~~ 37 (257)
T PRK07067 14 AASGIGEAVAERYLAEGARVVIAD 37 (257)
T ss_pred CCchHHHHHHHHHHHcCCEEEEEc
Confidence 456778999999999999987774
No 182
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=26.56 E-value=1.7e+02 Score=24.39 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=15.8
Q ss_pred HHHHHHHhCCceEEEeccc
Q 048768 98 AIDVARVVGISIFYFRTIR 116 (151)
Q Consensus 98 ~~~vA~~lgIP~v~f~t~~ 116 (151)
..-+|+++|||.|+..+++
T Consensus 241 lAl~Ak~~~VPfyV~a~~~ 259 (329)
T PRK06371 241 KAVLAKVNGIPFYVAAPGS 259 (329)
T ss_pred HHHHHHHcCCCEEEecccc
Confidence 5677899999999988754
No 183
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=26.53 E-value=86 Score=24.59 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=25.1
Q ss_pred EEcCC-ChhHH--HHHHHHHHHhCCCEEEEEeCCCch
Q 048768 14 IWPLA-ALGHV--MLKLAELLCNAGVKITFLNTEEFH 47 (151)
Q Consensus 14 ~vP~p-~~GHi--~l~Lak~La~~G~~VT~v~t~~~~ 47 (151)
+.+.. .-|.- ..++++.|.++|+.|++++.....
T Consensus 5 ~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~ 41 (358)
T cd03812 5 IVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEE 41 (358)
T ss_pred EeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCC
Confidence 34443 34555 889999999999999999875443
No 184
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=26.47 E-value=1.5e+02 Score=25.20 Aligned_cols=119 Identities=12% Similarity=0.121 Sum_probs=64.3
Q ss_pred CCeEEEEcCCChhHH-HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcCCCCCCCC-C-----
Q 048768 9 YPYVLIWPLAALGHV-MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTITDRLPLNH-P----- 81 (151)
Q Consensus 9 ~~hvv~vP~p~~GHi-~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd~lp~~~-~----- 81 (151)
..+|++.=.-+.|=. .+++.+.|.+.|+.|.++.|+.-.+-+....-..... .+ + +..+-+...... +
T Consensus 3 ~k~IllgiTGSiaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~~l~~~~~---~~-v-~~~~~~~~~~~~~hi~l~~ 77 (390)
T TIGR00521 3 NKKILLGVTGGIAAYKTVELVRELVRQGAEVKVIMTEAAKKFITPLTLEALSG---HK-V-VTELWGPIEHNALHIDLAK 77 (390)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHHHHHHHHhhC---Cc-e-eehhccccccccchhhccc
Confidence 346665544444444 9999999999999999999876554332110000000 11 1 111110000000 0
Q ss_pred --------cCccc-hhh----hcccccchHHHHHHHhCCceEEEeccchHHH---HHHHhHHHHHhcCCc
Q 048768 82 --------RISDK-LHE----YWNGFMSFAIDVARVVGISIFYFRTIRACAF---WAYYCIPQIIDAGEL 135 (151)
Q Consensus 82 --------~~~~~-~~~----l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~---~~~~~~p~l~~~g~~ 135 (151)
+.+.+ +.+ ++|-+.+-+..++. .|.++.-..+-.++ ...-++-.|.+.|..
T Consensus 78 ~aD~~vVaPaTanTlaKiA~GiaDnLlt~~~~~~~---~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~ 144 (390)
T TIGR00521 78 WADLILIAPATANTISKIAHGIADDLVSTTALAAS---APIILAPAMNENMYNNPAVQENIKRLKDDGYI 144 (390)
T ss_pred ccCEEEEecCCHHHHHHHHcccCCcHHHHHHHHhC---CCEEEEeCCChhhcCCHHHHHHHHHHHHCCcE
Confidence 00111 112 38888776666655 78877776555544 556788889988874
No 185
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.45 E-value=1.8e+02 Score=23.74 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=28.6
Q ss_pred CCCCeEEEEcCCChhHH---HHHHHHHHHhCCCEEEEEeC
Q 048768 7 VSYPYVLIWPLAALGHV---MLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi---~l~Lak~La~~G~~VT~v~t 43 (151)
|+..+++++.-|..++. .-++.+.|.++|+.+.+..+
T Consensus 1 ~~~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~ 40 (305)
T PRK02645 1 MQLKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPS 40 (305)
T ss_pred CCcCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 55567888888877776 66777778889999888654
No 186
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=26.33 E-value=1.4e+02 Score=22.75 Aligned_cols=29 Identities=10% Similarity=0.083 Sum_probs=23.3
Q ss_pred CChhHH--HHHHHHHHHhCCCEEEEEeCCCc
Q 048768 18 AALGHV--MLKLAELLCNAGVKITFLNTEEF 46 (151)
Q Consensus 18 p~~GHi--~l~Lak~La~~G~~VT~v~t~~~ 46 (151)
..-|.- ..+|++.|.+.|+.+.+++....
T Consensus 10 ~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~ 40 (365)
T cd03807 10 DVGGAERMLVRLLKGLDRDRFEHVVISLTDR 40 (365)
T ss_pred cCccHHHHHHHHHHHhhhccceEEEEecCcc
Confidence 335666 89999999999999999876543
No 187
>PRK08589 short chain dehydrogenase; Validated
Probab=26.16 E-value=1.7e+02 Score=22.58 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=25.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 5 NSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 5 ~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
..|+...+++ . -+-|.|-..+|++|+++|.+|.++.-
T Consensus 2 ~~l~~k~vlI-t-Gas~gIG~aia~~l~~~G~~vi~~~r 38 (272)
T PRK08589 2 KRLENKVAVI-T-GASTGIGQASAIALAQEGAYVLAVDI 38 (272)
T ss_pred CCCCCCEEEE-E-CCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 3455444444 2 33456688999999999999988754
No 188
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=26.13 E-value=92 Score=25.88 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=34.5
Q ss_pred CCCCCC----CCeEEEEcCCChhHH------HHHHHHHHHhCCCEEEEEeCCCch
Q 048768 3 DRNSVS----YPYVLIWPLAALGHV------MLKLAELLCNAGVKITFLNTEEFH 47 (151)
Q Consensus 3 ~~~~m~----~~hvv~vP~p~~GHi------~l~Lak~La~~G~~VT~v~t~~~~ 47 (151)
|+.+|+ .+++++.+.++.||. ..+..+.+...|+.+.++-|....
T Consensus 106 d~~r~~~~~~~~~~~~r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~ 160 (332)
T PRK09435 106 DKTRMERLSRHPNAFIRPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVG 160 (332)
T ss_pred hHhHHHhhcCCCCeEEEecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCc
Confidence 666665 357899999999999 355556666789999999776655
No 189
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.89 E-value=1.8e+02 Score=21.67 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=21.2
Q ss_pred CChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 18 AALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 18 p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
-+-|.+..++++.|+++|++|+.+..
T Consensus 12 Gasg~iG~~l~~~l~~~G~~V~~~~r 37 (251)
T PRK07231 12 GASSGIGEGIARRFAAEGARVVVTDR 37 (251)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 44577788999999999999887754
No 190
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=25.82 E-value=40 Score=21.54 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=12.2
Q ss_pred HHHHHHHHhCCCEEEEEeC
Q 048768 25 LKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 25 l~Lak~La~~G~~VT~v~t 43 (151)
=+|...|..+|+.||=.|.
T Consensus 23 ~eL~~~L~~~Gi~vTQaTi 41 (70)
T PF01316_consen 23 EELVELLEEEGIEVTQATI 41 (70)
T ss_dssp HHHHHHHHHTT-T--HHHH
T ss_pred HHHHHHHHHcCCCcchhHH
Confidence 4788999999999765443
No 191
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.75 E-value=1.2e+02 Score=22.03 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhHH
Q 048768 24 MLKLAELLCNAGVKITFLNTEEFHDRL 50 (151)
Q Consensus 24 ~l~Lak~La~~G~~VT~v~t~~~~~~~ 50 (151)
.+-++.+|-.+||+||+..|+.-.+.+
T Consensus 21 aiYls~klkkkgf~v~VaateAa~kLl 47 (148)
T COG4081 21 AIYLSHKLKKKGFDVTVAATEAALKLL 47 (148)
T ss_pred HHHHHHHhhccCccEEEecCHhhheee
Confidence 888999999999999999887655443
No 192
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=25.45 E-value=78 Score=27.37 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=22.1
Q ss_pred ChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 19 ALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 19 ~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
|-||..++.|..|+++|++|+++.
T Consensus 7 GgGlAGleaA~~LAr~G~~V~LiE 30 (433)
T TIGR00137 7 GGGLAGSEAAWQLAQAGVPVILYE 30 (433)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEe
Confidence 678998999999999999999996
No 193
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=25.16 E-value=2.3e+02 Score=19.25 Aligned_cols=40 Identities=25% Similarity=0.428 Sum_probs=32.1
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHH
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRL 50 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~ 50 (151)
+++++--|+.|-. ..+++..++.+|..|.++..+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~ 42 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEEL 42 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHH
Confidence 3566777899998 888999999999999999887665543
No 194
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=25.11 E-value=81 Score=26.52 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCCC
Q 048768 24 MLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 24 ~l~Lak~La~~G~~VT~v~t~~ 45 (151)
.-.|++.|+++|++|+++++..
T Consensus 22 ~~~L~~aL~~~G~~V~Vi~p~y 43 (476)
T cd03791 22 VGALPKALAKLGHDVRVIMPKY 43 (476)
T ss_pred HHHHHHHHHHCCCeEEEEecCC
Confidence 7789999999999999998643
No 195
>PRK08939 primosomal protein DnaI; Reviewed
Probab=24.88 E-value=1.2e+02 Score=24.64 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=34.9
Q ss_pred CeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhh
Q 048768 10 PYVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRH 53 (151)
Q Consensus 10 ~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~ 53 (151)
..+++.--+|-|=. +..+|+.|+.+|.+|+|++.+.....+..+
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~ 202 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNS 202 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHH
Confidence 35778877788766 888999999999999999888766665543
No 196
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=24.85 E-value=2.1e+02 Score=21.92 Aligned_cols=42 Identities=17% Similarity=0.039 Sum_probs=34.5
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhh
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIR 52 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~ 52 (151)
-+++.--|+.|-. .+|++..-+.+|.++.|++++...+++..
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRR 66 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHH
Confidence 3667777999999 88998887789999999999987766544
No 197
>PRK07577 short chain dehydrogenase; Provisional
Probab=24.65 E-value=1.9e+02 Score=21.35 Aligned_cols=31 Identities=26% Similarity=0.220 Sum_probs=22.4
Q ss_pred eEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 11 YVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 11 hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
++++. -+.|-+..+++++|+++|.+|..+..
T Consensus 5 ~vlIt--G~s~~iG~~ia~~l~~~G~~v~~~~r 35 (234)
T PRK07577 5 TVLVT--GATKGIGLALSLRLANLGHQVIGIAR 35 (234)
T ss_pred EEEEE--CCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 44443 34455688889999999999887743
No 198
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=24.65 E-value=1.1e+02 Score=24.16 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=21.7
Q ss_pred CChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 18 AALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 18 p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
-+-|++.-+++++|.++|++|+.+..
T Consensus 11 GatGfIG~~l~~~L~~~g~~V~~~~r 36 (322)
T PLN02662 11 GASGYIASWLVKLLLQRGYTVKATVR 36 (322)
T ss_pred CChHHHHHHHHHHHHHCCCEEEEEEc
Confidence 34688888899999999999987754
No 199
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=24.58 E-value=2e+02 Score=20.66 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=28.8
Q ss_pred CCCCCeEEEEcCCChhHH-HHHHHHHHHhCCCEEEEEeC
Q 048768 6 SVSYPYVLIWPLAALGHV-MLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 6 ~m~~~hvv~vP~p~~GHi-~l~Lak~La~~G~~VT~v~t 43 (151)
+.+..+|+++ +++.. ...|+.+|.++|.+||.+..
T Consensus 25 ~~~gk~v~Vv---Grs~~vG~pla~lL~~~gatV~~~~~ 60 (140)
T cd05212 25 RLDGKKVLVV---GRSGIVGAPLQCLLQRDGATVYSCDW 60 (140)
T ss_pred CCCCCEEEEE---CCCchHHHHHHHHHHHCCCEEEEeCC
Confidence 4556688876 57888 99999999999999999964
No 200
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=24.52 E-value=1.5e+02 Score=24.76 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=26.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeCC
Q 048768 10 PYVLIWPLAALGHVMLKLAELLCNAGVKITFLNTE 44 (151)
Q Consensus 10 ~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t~ 44 (151)
.+|+++ +-|-+.+++|..|.++|.+||++...
T Consensus 138 ~~vvVi---GgG~~g~e~A~~l~~~g~~Vtli~~~ 169 (427)
T TIGR03385 138 ENVVII---GGGYIGIEMAEALRERGKNVTLIHRS 169 (427)
T ss_pred CeEEEE---CCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 478887 66766889999999999999998643
No 201
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=24.16 E-value=1.2e+02 Score=23.57 Aligned_cols=32 Identities=9% Similarity=0.271 Sum_probs=24.8
Q ss_pred CCChhHH---HHHHHHHHHhC--CCEEEEEeCCCchh
Q 048768 17 LAALGHV---MLKLAELLCNA--GVKITFLNTEEFHD 48 (151)
Q Consensus 17 ~p~~GHi---~l~Lak~La~~--G~~VT~v~t~~~~~ 48 (151)
..|.|+. .+++.++|.++ |+.|.++.|+.-.+
T Consensus 6 itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~ 42 (234)
T TIGR02700 6 ITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEE 42 (234)
T ss_pred EeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHh
Confidence 3444444 89999999998 99999998876443
No 202
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=24.10 E-value=69 Score=26.32 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=23.2
Q ss_pred EcCCCh-hHH--HHHHHHHHHhCCCEEEEEeCCC
Q 048768 15 WPLAAL-GHV--MLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 15 vP~p~~-GHi--~l~Lak~La~~G~~VT~v~t~~ 45 (151)
+|||.- |.- +.++.+.|+++ ++||+++-..
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 577665 555 99999999776 7999987543
No 203
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=24.06 E-value=50 Score=19.61 Aligned_cols=13 Identities=38% Similarity=0.437 Sum_probs=8.8
Q ss_pred hHHHHHHHhCCce
Q 048768 97 FAIDVARVVGISI 109 (151)
Q Consensus 97 w~~~vA~~lgIP~ 109 (151)
--.+||++|||+.
T Consensus 24 s~~~ia~~fgv~~ 36 (53)
T PF04218_consen 24 SKRDIAREFGVSR 36 (53)
T ss_dssp -HHHHHHHHT--C
T ss_pred CHHHHHHHhCCCH
Confidence 4689999999985
No 204
>PRK07454 short chain dehydrogenase; Provisional
Probab=23.99 E-value=2e+02 Score=21.41 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=23.2
Q ss_pred EEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 12 VLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 12 vv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
.++|. -+-|.+...++++|+++|.+|+++.-
T Consensus 8 ~vlIt-G~sg~iG~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 8 RALIT-GASSGIGKATALAFAKAGWDLALVAR 38 (241)
T ss_pred EEEEe-CCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 34443 24566799999999999999888754
No 205
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=23.97 E-value=2e+02 Score=21.52 Aligned_cols=118 Identities=13% Similarity=0.081 Sum_probs=60.0
Q ss_pred EEEEcCCChhHH-HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEEEcCC-CCCCC-CCcC---cc
Q 048768 12 VLIWPLAALGHV-MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFKTITD-RLPLN-HPRI---SD 85 (151)
Q Consensus 12 vv~vP~p~~GHi-~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lpd-~lp~~-~~~~---~~ 85 (151)
|++.=.-+.|=+ ..++.++|.++|++|.++.|+.-.+-+....-..... . .+ +..+.+ .-+.. .+.. ..
T Consensus 3 I~lgvtGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~~~~l~~l~~---~-~v-~~~~~~~~~~~~~~hi~l~~~a 77 (177)
T TIGR02113 3 ILLAVTGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFITPLTLQVLSK---N-PV-HLDVMDEHDPKVINHIELAKKA 77 (177)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhccHhhHHHHhC---C-Ce-EeeccccccCCCcccceechhh
Confidence 333333344444 8899999999999999998876443322110000000 0 01 011111 00000 0000 01
Q ss_pred chh-----------h----hcccccchHHHHHHHhCCceEEEeccchHHH---HHHHhHHHHHhcCCc
Q 048768 86 KLH-----------E----YWNGFMSFAIDVARVVGISIFYFRTIRACAF---WAYYCIPQIIDAGEL 135 (151)
Q Consensus 86 ~~~-----------~----l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~---~~~~~~p~l~~~g~~ 135 (151)
|.. + +.|-+.+-+.. |-+.+.|.+++-..+-.+. +.--++..|.+.|..
T Consensus 78 D~~vVaPaSanTlakiA~GiaDnLlt~~a~-a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~ 144 (177)
T TIGR02113 78 DLFLVAPASANTIAHLAHGFADNIVTSVAL-ALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQ 144 (177)
T ss_pred CEEEEEeCCHHHHHHHHcCcCCcHHHHHHH-HcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCE
Confidence 110 2 37777653333 3334889998876665543 555688889999974
No 206
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=23.97 E-value=2.7e+02 Score=21.06 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=33.8
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhh
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIR 52 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~ 52 (151)
-+++.--|+.|-. ..+++...+.+|.++.|++++...+.+.+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~ 70 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLK 70 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHH
Confidence 3566677889988 88988888889999999999887765544
No 207
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=23.85 E-value=1.4e+02 Score=16.79 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=21.5
Q ss_pred HHHHHHHhCCceEEEeccchHHHHHHHhHHHHHhcCCc
Q 048768 98 AIDVARVVGISIFYFRTIRACAFWAYYCIPQIIDAGEL 135 (151)
Q Consensus 98 ~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~~~g~~ 135 (151)
..++|+++|++. -.+..|+..|.+.|++
T Consensus 18 ~~el~~~l~~s~----------~~vs~hL~~L~~~glV 45 (47)
T PF01022_consen 18 VSELAEELGLSQ----------STVSHHLKKLREAGLV 45 (47)
T ss_dssp HHHHHHHHTS-H----------HHHHHHHHHHHHTTSE
T ss_pred hhhHHHhccccc----------hHHHHHHHHHHHCcCe
Confidence 678899998764 3467889999999876
No 208
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=23.80 E-value=1.7e+02 Score=22.58 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=27.3
Q ss_pred CCCCCeEEEEcCCChhHH-HHHHHHHHHhCCCEEEEE
Q 048768 6 SVSYPYVLIWPLAALGHV-MLKLAELLCNAGVKITFL 41 (151)
Q Consensus 6 ~m~~~hvv~vP~p~~GHi-~l~Lak~La~~G~~VT~v 41 (151)
+.+..+++++ ++|.+ -..||..|..+|.+||++
T Consensus 59 ~l~GK~vvVI---GrS~iVGkPla~lL~~~~AtVti~ 92 (197)
T cd01079 59 RLYGKTITII---NRSEVVGRPLAALLANDGARVYSV 92 (197)
T ss_pred CCCCCEEEEE---CCCccchHHHHHHHHHCCCEEEEE
Confidence 4556677777 47788 888999999999999988
No 209
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.63 E-value=47 Score=21.58 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=18.0
Q ss_pred HH-HHHHHHHHHhCCCEEEEE
Q 048768 22 HV-MLKLAELLCNAGVKITFL 41 (151)
Q Consensus 22 Hi-~l~Lak~La~~G~~VT~v 41 (151)
-| ||.|..++-++|..|+|.
T Consensus 31 SiR~M~L~~~wR~~G~~i~F~ 51 (74)
T COG3433 31 SIRMMALLERWRKRGADIDFA 51 (74)
T ss_pred HHHHHHHHHHHHHcCCcccHH
Confidence 35 999999999999999997
No 210
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=23.59 E-value=1.9e+02 Score=21.32 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=27.5
Q ss_pred CCCCeEEEEcC--CChhHH--HHHHHHHHHhCCCEEEEEeCC
Q 048768 7 VSYPYVLIWPL--AALGHV--MLKLAELLCNAGVKITFLNTE 44 (151)
Q Consensus 7 m~~~hvv~vP~--p~~GHi--~l~Lak~La~~G~~VT~v~t~ 44 (151)
+++.++++|-. .+.|=. ...||..|+++|.+|-++-..
T Consensus 14 ~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 14 GAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred cCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 33455555544 455666 999999999999999888443
No 211
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=23.56 E-value=2e+02 Score=25.25 Aligned_cols=118 Identities=12% Similarity=0.079 Sum_probs=65.9
Q ss_pred CCeEEEEcCCChhHH-HHHHHHHHHhCCCEEEEEeCCCchhHHhhhccccccccCCCCCceEE-EcCCC---CCCCCC--
Q 048768 9 YPYVLIWPLAALGHV-MLKLAELLCNAGVKITFLNTEEFHDRLIRHRSDVFSRCINLPGFQFK-TITDR---LPLNHP-- 81 (151)
Q Consensus 9 ~~hvv~vP~p~~GHi-~l~Lak~La~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~i~~~-~lpd~---lp~~~~-- 81 (151)
..+|++.=.-+.+=. ..++.++|.++|+.|.++.|+.-.+-+....... ..+-++. .+.+. ...+..
T Consensus 70 ~k~IllgVtGsIAayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~~~~~------ls~~~V~~d~~~~~~~~~~~Hi~l 143 (475)
T PRK13982 70 SKRVTLIIGGGIAAYKALDLIRRLKERGAHVRCVLTKAAQQFVTPLTASA------LSGQRVYTDLFDPESEFDAGHIRL 143 (475)
T ss_pred CCEEEEEEccHHHHHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHHHHHH------hcCCceEecCCCcccccCccchhh
Confidence 456776655444444 9999999999999999999987554332211000 0111111 11110 000000
Q ss_pred ----------cCccch-hh----hcccccchHHHHHHHhCCceEEEeccchHH---HHHHHhHHHHHhcCCc
Q 048768 82 ----------RISDKL-HE----YWNGFMSFAIDVARVVGISIFYFRTIRACA---FWAYYCIPQIIDAGEL 135 (151)
Q Consensus 82 ----------~~~~~~-~~----l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~---~~~~~~~p~l~~~g~~ 135 (151)
+.+.+. .+ +.|-+. ..++-..+.|.++.-..+..+ -+..-++-.|.+.|..
T Consensus 144 a~~aD~~vVAPATANTIAKiA~GiADnLl---t~v~La~~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~ 212 (475)
T PRK13982 144 ARDCDLIVVAPATADLMAKMANGLADDLA---SAILLAANRPILLAPAMNPLMWNNPATRRNVAQLKRDGVH 212 (475)
T ss_pred hhhcCEEEEeeCCHHHHHHHHccccCcHH---HHHHHhcCCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCE
Confidence 001010 02 267664 444455689999988887773 3455788889999974
No 212
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=23.48 E-value=1.4e+02 Score=23.26 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=22.1
Q ss_pred CChhHH-HHHHHHHHHhCCCEEEEEeCCC
Q 048768 18 AALGHV-MLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 18 p~~GHi-~l~Lak~La~~G~~VT~v~t~~ 45 (151)
|..+-. ..++++.|.++|++|++++...
T Consensus 10 ~~~~~~~~~~~~~~L~~~g~~v~v~~~~~ 38 (355)
T cd03799 10 PRLSETFILREILALEAAGHEVEIFSLRP 38 (355)
T ss_pred CCcchHHHHHHHHHHHhCCCeEEEEEecC
Confidence 333445 8899999999999999997543
No 213
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=23.45 E-value=2.6e+02 Score=21.87 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=27.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeCCCch
Q 048768 10 PYVLIWPLAALGHVMLKLAELLCNAGVKITFLNTEEFH 47 (151)
Q Consensus 10 ~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t~~~~ 47 (151)
.+||+| |-|.+..+=++.|...|.+||++.++...
T Consensus 26 ~~VLVV---GGG~VA~RK~~~Ll~~gA~VtVVap~i~~ 60 (223)
T PRK05562 26 IKVLII---GGGKAAFIKGKTFLKKGCYVYILSKKFSK 60 (223)
T ss_pred CEEEEE---CCCHHHHHHHHHHHhCCCEEEEEcCCCCH
Confidence 356665 57888777778888999999999877654
No 214
>PRK10125 putative glycosyl transferase; Provisional
Probab=23.42 E-value=1.4e+02 Score=25.06 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=22.7
Q ss_pred cCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 16 PLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 16 P~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
-+-+-|+++++|++.|.++|+.+-++..
T Consensus 11 ~~GGaeri~~~L~~~l~~~G~~~~i~~~ 38 (405)
T PRK10125 11 AEGGAAGVALDLHQRALQQGLASHFVYG 38 (405)
T ss_pred cCCchhHHHHHHHHHHHhcCCeEEEEEe
Confidence 3445567799999999999999988754
No 215
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=23.40 E-value=1.8e+02 Score=21.96 Aligned_cols=120 Identities=11% Similarity=0.120 Sum_probs=69.8
Q ss_pred eEEEEcCCChhHH-HHHHHHHHHh-CCCEEEEEeCCCchhHHhhhcc-c--cccccCCCCCceEEEcCCCCC----CC--
Q 048768 11 YVLIWPLAALGHV-MLKLAELLCN-AGVKITFLNTEEFHDRLIRHRS-D--VFSRCINLPGFQFKTITDRLP----LN-- 79 (151)
Q Consensus 11 hvv~vP~p~~GHi-~l~Lak~La~-~G~~VT~v~t~~~~~~~~~~~~-~--~~~~~~~~~~i~~~~lpd~lp----~~-- 79 (151)
+|++.=.-+.|-+ ..++.++|.+ .|++|.++.|+.-.+-+..... . .... ..+ ++.. ++... .+
T Consensus 3 ~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~~~~~~~~~~~~---l~~-~v~~-~~~~~~~i~~~s~ 77 (185)
T PRK06029 3 RLIVGISGASGAIYGVRLLQVLRDVGEIETHLVISQAARQTLAHETDFSLRDVQA---LAD-VVHD-VRDIGASIASGSF 77 (185)
T ss_pred EEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHHHHCCChhhHHH---hcC-cccC-hhhcccChhhcCc
Confidence 4555555556666 9999999999 4999999999766544332100 0 0000 000 0000 00000 00
Q ss_pred CC------cCccch-hh----hcccccchHHHHHHHhCCceEEEeccchHHHHHHHhHHHHHhcCCc
Q 048768 80 HP------RISDKL-HE----YWNGFMSFAIDVARVVGISIFYFRTIRACAFWAYYCIPQIIDAGEL 135 (151)
Q Consensus 80 ~~------~~~~~~-~~----l~D~~~~w~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~~~g~~ 135 (151)
.. +.+.+. .+ ++|-+.+-+.+++-+.+.|.+++-...-..-...-++-.|.+.|..
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~~M~~~p~~~~Nl~~L~~~G~~ 144 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVRETPLHLGHLRNMTKLAEMGAI 144 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEeccccCCHHHHHHHHHHHHCcCE
Confidence 00 001111 12 3899988888888888999998876544445566788889999974
No 216
>PRK06849 hypothetical protein; Provisional
Probab=23.14 E-value=1.8e+02 Score=24.00 Aligned_cols=32 Identities=31% Similarity=0.356 Sum_probs=25.5
Q ss_pred eEEEEcCCChhHH-HHHHHHHHHhCCCEEEEEeCCC
Q 048768 11 YVLIWPLAALGHV-MLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 11 hvv~vP~p~~GHi-~l~Lak~La~~G~~VT~v~t~~ 45 (151)
.|++. +-++- .+++++.|.+.|++|..+.+..
T Consensus 6 ~VLI~---G~~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 6 TVLIT---GARAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred EEEEe---CCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45555 46666 9999999999999999986654
No 217
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=23.07 E-value=90 Score=26.26 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCC--EEEEEeCC
Q 048768 24 MLKLAELLCNAGV--KITFLNTE 44 (151)
Q Consensus 24 ~l~Lak~La~~G~--~VT~v~t~ 44 (151)
+.+||+.|+++|+ .|+++|..
T Consensus 32 v~~La~~L~~~G~~~~V~v~t~~ 54 (439)
T TIGR02472 32 VLELARALARRSEVEQVDLVTRL 54 (439)
T ss_pred HHHHHHHHHhCCCCcEEEEEecc
Confidence 8999999999986 89999853
No 218
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=23.00 E-value=1.4e+02 Score=22.80 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhHHhh
Q 048768 24 MLKLAELLCNAGVKITFLNTEEFHDRLIR 52 (151)
Q Consensus 24 ~l~Lak~La~~G~~VT~v~t~~~~~~~~~ 52 (151)
..++|+.|.+.|+++ +.|+...+.+..
T Consensus 13 l~~lAk~L~~lGf~I--~AT~GTAk~L~e 39 (187)
T cd01421 13 LVEFAKELVELGVEI--LSTGGTAKFLKE 39 (187)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHHH
Confidence 678999999999986 577777766543
No 219
>PRK07806 short chain dehydrogenase; Provisional
Probab=22.74 E-value=2.4e+02 Score=21.07 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=24.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 6 SVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 6 ~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
+|+...+++. -+.|-+...++++|+++|++|+.+.
T Consensus 3 ~~~~k~vlIt--GasggiG~~l~~~l~~~G~~V~~~~ 37 (248)
T PRK07806 3 DLPGKTALVT--GSSRGIGADTAKILAGAGAHVVVNY 37 (248)
T ss_pred CCCCcEEEEE--CCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 4544444443 3456678888999999999988764
No 220
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=22.73 E-value=2.5e+02 Score=20.71 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.0
Q ss_pred ChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 19 ALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 19 ~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
+-|.+..++++.|+++|++|+++..
T Consensus 13 ~sg~iG~~l~~~l~~~G~~v~~~~~ 37 (248)
T PRK05557 13 ASRGIGRAIAERLAAQGANVVINYA 37 (248)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEeC
Confidence 5677899999999999999977654
No 221
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.68 E-value=2.3e+02 Score=20.93 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=22.7
Q ss_pred eEEEEcCCChhHHHHHHHHHHHhCCCEEEEE
Q 048768 11 YVLIWPLAALGHVMLKLAELLCNAGVKITFL 41 (151)
Q Consensus 11 hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v 41 (151)
++++.- +.|.+..+++++|+++|++|.++
T Consensus 7 ~ilI~G--asg~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 7 VAIVTG--ASGGIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred EEEEeC--CCcHHHHHHHHHHHHCCCEEEEE
Confidence 455543 45788899999999999998877
No 222
>PRK06057 short chain dehydrogenase; Provisional
Probab=22.61 E-value=2.2e+02 Score=21.53 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=25.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 6 SVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 6 ~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
.|+...|++. -+-|.+...++++|+++|++|.++..
T Consensus 4 ~~~~~~vlIt--GasggIG~~~a~~l~~~G~~v~~~~r 39 (255)
T PRK06057 4 RLAGRVAVIT--GGGSGIGLATARRLAAEGATVVVGDI 39 (255)
T ss_pred cCCCCEEEEE--CCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 4555444442 33577788999999999999887743
No 223
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=22.42 E-value=2e+02 Score=21.60 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=32.7
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhC-CCEEEEEeCCCchhHHhhh
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNA-GVKITFLNTEEFHDRLIRH 53 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~-G~~VT~v~t~~~~~~~~~~ 53 (151)
-+++.=-|+.|=. .+|++..-+.+ |-+|.|++++...+.+.+.
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~ 66 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIEN 66 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHH
Confidence 3666777899988 89999888888 9999999999888766544
No 224
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=22.41 E-value=1e+02 Score=17.72 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=21.0
Q ss_pred HHHHHHHhCCceEEEeccchHHHHHHHhHHHHHhcCCc
Q 048768 98 AIDVARVVGISIFYFRTIRACAFWAYYCIPQIIDAGEL 135 (151)
Q Consensus 98 ~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~~~g~~ 135 (151)
..++|+++|+|.- .++-.+..|.+.|++
T Consensus 21 ~~eia~~~gl~~s----------tv~r~L~tL~~~g~v 48 (52)
T PF09339_consen 21 LSEIARALGLPKS----------TVHRLLQTLVEEGYV 48 (52)
T ss_dssp HHHHHHHHTS-HH----------HHHHHHHHHHHTTSE
T ss_pred HHHHHHHHCcCHH----------HHHHHHHHHHHCcCe
Confidence 7899999999863 355667788888876
No 225
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=22.40 E-value=2.2e+02 Score=18.22 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=21.9
Q ss_pred hHH-HHHHHHHHHhCCCEEEEEeCCCchhH
Q 048768 21 GHV-MLKLAELLCNAGVKITFLNTEEFHDR 49 (151)
Q Consensus 21 GHi-~l~Lak~La~~G~~VT~v~t~~~~~~ 49 (151)
|-. ...+++++.++|...+..+...|...
T Consensus 39 g~~lv~~l~~~~~~~g~~~~l~v~~~N~~s 68 (86)
T PF08445_consen 39 GSALVAALARELLERGKTPFLYVDADNEAS 68 (86)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEETT-HHH
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEECCCHHH
Confidence 444 77889999999999888877777643
No 226
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=22.39 E-value=1.9e+02 Score=22.53 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=31.6
Q ss_pred CCeEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhH
Q 048768 9 YPYVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDR 49 (151)
Q Consensus 9 ~~hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~ 49 (151)
+.=|+||=.||.|=. .-+|++.|-..|++.-+++.....++
T Consensus 12 kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~ 54 (222)
T PF01591_consen 12 KLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRK 54 (222)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceec
Confidence 345899999999988 99999999999999999976544433
No 227
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=22.36 E-value=95 Score=18.84 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=24.8
Q ss_pred HHHHHHHhCCceEEEeccchHHHHHHHhHHHHHhcCCccCC
Q 048768 98 AIDVARVVGISIFYFRTIRACAFWAYYCIPQIIDAGELPIR 138 (151)
Q Consensus 98 ~~~vA~~lgIP~v~f~t~~A~~~~~~~~~p~l~~~g~~~~~ 138 (151)
+.++|+++|+|. -.++-.+..|.++|.+-..
T Consensus 25 ~~eIa~~l~i~~----------~~v~~~L~~L~~~GlV~~~ 55 (68)
T PF01978_consen 25 AEEIAEELGISR----------STVYRALKSLEEKGLVERE 55 (68)
T ss_dssp HHHHHHHHTSSH----------HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCcCH----------HHHHHHHHHHHHCCCEEEE
Confidence 678999999986 3467778899999998543
No 228
>PLN02240 UDP-glucose 4-epimerase
Probab=22.16 E-value=1.9e+02 Score=23.06 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=25.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 7 VSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 7 m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
|....|++. -+-|.+..+++++|+++|++|+.+.
T Consensus 3 ~~~~~vlIt--GatG~iG~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVT--GGAGYIGSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCCEEEEE--CCCChHHHHHHHHHHHCCCEEEEEe
Confidence 444455553 3567888889999999999998885
No 229
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=22.11 E-value=1.3e+02 Score=23.37 Aligned_cols=23 Identities=13% Similarity=-0.037 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCc
Q 048768 24 MLKLAELLCNAGVKITFLNTEEF 46 (151)
Q Consensus 24 ~l~Lak~La~~G~~VT~v~t~~~ 46 (151)
+.+|++.|.++|..|++++....
T Consensus 21 ~~~l~~~L~~~~~~v~~~~~~~~ 43 (365)
T cd03809 21 ARELLRALLKLDPEEVLLLLPGA 43 (365)
T ss_pred HHHHHHHHHhcCCceEEEEecCc
Confidence 99999999999999999976543
No 230
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.09 E-value=2.3e+02 Score=23.92 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=27.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeCCC
Q 048768 9 YPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 9 ~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t~~ 45 (151)
..|+.++=.-+-||+.+|+||. -|.+||.+.+..
T Consensus 182 G~~vgI~GlGGLGh~aVq~AKA---MG~rV~vis~~~ 215 (360)
T KOG0023|consen 182 GKWVGIVGLGGLGHMAVQYAKA---MGMRVTVISTSS 215 (360)
T ss_pred CcEEEEecCcccchHHHHHHHH---hCcEEEEEeCCc
Confidence 3478888888899999999885 477899997764
No 231
>PRK08226 short chain dehydrogenase; Provisional
Probab=22.04 E-value=2.7e+02 Score=21.03 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=25.0
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 5 NSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 5 ~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
.+|+...++ |.- +-|-+...++++|+++|.+|.++..
T Consensus 2 ~~~~~~~~l-ItG-~s~giG~~la~~l~~~G~~Vv~~~r 38 (263)
T PRK08226 2 GKLTGKTAL-ITG-ALQGIGEGIARVFARHGANLILLDI 38 (263)
T ss_pred CCCCCCEEE-EeC-CCChHHHHHHHHHHHCCCEEEEecC
Confidence 345544443 332 3466688899999999999887754
No 232
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=21.94 E-value=3.3e+02 Score=20.03 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=31.8
Q ss_pred EEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCC-chhHHh
Q 048768 12 VLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEE-FHDRLI 51 (151)
Q Consensus 12 vv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~-~~~~~~ 51 (151)
+.+.=-|+.|=. .++++...+.+|.++.|+.++. ...++.
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~ 57 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFK 57 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHH
Confidence 456667888988 8999999999999999999985 444443
No 233
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=21.91 E-value=1.1e+02 Score=23.83 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=21.2
Q ss_pred cCCChhHH---HHHHHHHHHhCCCEEEEEeCCC
Q 048768 16 PLAALGHV---MLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 16 P~p~~GHi---~l~Lak~La~~G~~VT~v~t~~ 45 (151)
||.-.|=+ .-.|+|.|+++|++|+++++..
T Consensus 11 P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 11 PFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp TTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred cccccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 33334445 7789999999999999998755
No 234
>PRK06914 short chain dehydrogenase; Provisional
Probab=21.88 E-value=2.3e+02 Score=21.71 Aligned_cols=25 Identities=16% Similarity=-0.047 Sum_probs=20.7
Q ss_pred ChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 19 ALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 19 ~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
+.|-+...++++|+++|++|..+..
T Consensus 11 asg~iG~~la~~l~~~G~~V~~~~r 35 (280)
T PRK06914 11 ASSGFGLLTTLELAKKGYLVIATMR 35 (280)
T ss_pred CCchHHHHHHHHHHhCCCEEEEEeC
Confidence 5667788999999999999988753
No 235
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=21.87 E-value=1e+02 Score=24.29 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=24.2
Q ss_pred CCCCCCCeEEEE-----cCCChhHH-HHHHHHHHHh-C-CCEE
Q 048768 4 RNSVSYPYVLIW-----PLAALGHV-MLKLAELLCN-A-GVKI 38 (151)
Q Consensus 4 ~~~m~~~hvv~v-----P~p~~GHi-~l~Lak~La~-~-G~~V 38 (151)
|+.|++..|+++ .-+-++|+ |+++||--.+ . |++|
T Consensus 1 ~~~~~~~~v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~V 43 (234)
T KOG3199|consen 1 MEDSEKTPVVLLACGSFNPITNLHLRMFELAKDYLNETGRYRV 43 (234)
T ss_pred CCCcccceEEEEEecccCchhHHHHHHHHHHHHHHhccCCeEE
Confidence 455666666664 44778999 9999988773 3 4554
No 236
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=21.87 E-value=2.3e+02 Score=24.53 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=37.1
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhCCCEEEEEeCCCchhHHhhh
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNAGVKITFLNTEEFHDRLIRH 53 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~G~~VT~v~t~~~~~~~~~~ 53 (151)
-+++.--|+-|=. .+|++...+.+|.++.|++.+...+++...
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 3677778999999 999999999999999999999888776544
No 237
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=21.84 E-value=2.6e+02 Score=21.55 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=32.5
Q ss_pred eEEEEcCCChhHH--HHHHHHHHHhC-CCEEEEEeCCCchhHH
Q 048768 11 YVLIWPLAALGHV--MLKLAELLCNA-GVKITFLNTEEFHDRL 50 (151)
Q Consensus 11 hvv~vP~p~~GHi--~l~Lak~La~~-G~~VT~v~t~~~~~~~ 50 (151)
-+++.--|+.|=. +++++..++.. |.+|-|++.+.....+
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~ 74 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRT 74 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHH
Confidence 4666777899988 99999999877 9999999998765443
No 238
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=21.60 E-value=1.8e+02 Score=22.85 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=21.6
Q ss_pred ChhHHHHHHHHHHHhCCCEEEEEeCCC
Q 048768 19 ALGHVMLKLAELLCNAGVKITFLNTEE 45 (151)
Q Consensus 19 ~~GHi~l~Lak~La~~G~~VT~v~t~~ 45 (151)
|-|-+..-+|..|++.|++|+++..+.
T Consensus 7 G~G~iG~~~a~~L~~~g~~V~~~~r~~ 33 (305)
T PRK12921 7 GAGAVGGTFGGRLLEAGRDVTFLVRPK 33 (305)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecHH
Confidence 667776678888999999999997633
No 239
>PRK06180 short chain dehydrogenase; Provisional
Probab=21.60 E-value=1.3e+02 Score=23.35 Aligned_cols=26 Identities=15% Similarity=-0.006 Sum_probs=21.6
Q ss_pred CChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 18 AALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 18 p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
-+.|.+..+++++|+++|.+|..+..
T Consensus 11 GasggiG~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 11 GVSSGFGRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred cCCChHHHHHHHHHHhCcCEEEEEeC
Confidence 34678888999999999999888754
No 240
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.51 E-value=1.8e+02 Score=22.61 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=25.3
Q ss_pred CeEEEEcCCChhH-HHHHHHHHHHhCCCEEEEEe
Q 048768 10 PYVLIWPLAALGH-VMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 10 ~hvv~vP~p~~GH-i~l~Lak~La~~G~~VT~v~ 42 (151)
-++++|.-.+.++ |-..+|++|+++|.+|.++.
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~ 40 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTY 40 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEec
Confidence 3577777766533 48899999999999998763
No 241
>PRK12828 short chain dehydrogenase; Provisional
Probab=21.46 E-value=2.4e+02 Score=20.71 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=20.5
Q ss_pred ChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 19 ALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 19 ~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
+-|.+...++++|+++|++|..+..
T Consensus 15 atg~iG~~la~~l~~~G~~v~~~~r 39 (239)
T PRK12828 15 GFGGLGRATAAWLAARGARVALIGR 39 (239)
T ss_pred CCCcHhHHHHHHHHHCCCeEEEEeC
Confidence 4578888999999999999877653
No 242
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=21.41 E-value=2.5e+02 Score=21.36 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=24.7
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 4 RNSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 4 ~~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
+.+|+...++ |- -+-|-|..++|++|+++|.+|+++.
T Consensus 3 ~~~l~~k~vl-It-Gas~gIG~~ia~~l~~~G~~v~~~~ 39 (260)
T PRK08416 3 SNEMKGKTLV-IS-GGTRGIGKAIVYEFAQSGVNIAFTY 39 (260)
T ss_pred ccccCCCEEE-Ee-CCCchHHHHHHHHHHHCCCEEEEEc
Confidence 3455544443 33 2335558899999999999987763
No 243
>PRK07063 short chain dehydrogenase; Provisional
Probab=21.36 E-value=2.7e+02 Score=21.07 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=24.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 5 NSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 5 ~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
+.++...++ |.- +.|-+..+++++|+++|.+|.++.
T Consensus 3 ~~l~~k~vl-VtG-as~gIG~~~a~~l~~~G~~vv~~~ 38 (260)
T PRK07063 3 NRLAGKVAL-VTG-AAQGIGAAIARAFAREGAAVALAD 38 (260)
T ss_pred cccCCCEEE-EEC-CCchHHHHHHHHHHHCCCEEEEEe
Confidence 345444444 433 345568899999999999987764
No 244
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=21.19 E-value=33 Score=25.59 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=21.4
Q ss_pred EEEEcCCChhHHHHHHHHHHHhCCCEEEEE
Q 048768 12 VLIWPLAALGHVMLKLAELLCNAGVKITFL 41 (151)
Q Consensus 12 vv~vP~p~~GHi~l~Lak~La~~G~~VT~v 41 (151)
++++=+-.-|.+.+++|++|.++|..|..+
T Consensus 68 ~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l 97 (229)
T PF00975_consen 68 YVLAGWSFGGILAFEMARQLEEAGEEVSRL 97 (229)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHTT-SESEE
T ss_pred eeehccCccHHHHHHHHHHHHHhhhccCce
Confidence 555555555666999999999999876433
No 245
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.17 E-value=2.1e+02 Score=22.55 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=23.9
Q ss_pred eEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 11 YVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 11 hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
+|.++ |.|.+...+|..|+.+|++|+++-.
T Consensus 5 kI~VI---G~G~mG~~ia~~la~~g~~V~~~d~ 34 (282)
T PRK05808 5 KIGVI---GAGTMGNGIAQVCAVAGYDVVMVDI 34 (282)
T ss_pred EEEEE---ccCHHHHHHHHHHHHCCCceEEEeC
Confidence 45554 7899988888999999999998843
No 246
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=21.16 E-value=95 Score=25.03 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=23.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 6 SVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 6 ~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
.|.+.++|+ .- |.|=|..++|++|+++|+++.++.
T Consensus 3 ~~~~~~~lI-TG-ASsGIG~~~A~~lA~~g~~liLva 37 (265)
T COG0300 3 PMKGKTALI-TG-ASSGIGAELAKQLARRGYNLILVA 37 (265)
T ss_pred CCCCcEEEE-EC-CCchHHHHHHHHHHHCCCEEEEEe
Confidence 344444433 33 334467899999999999988885
No 247
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=21.11 E-value=2.7e+02 Score=21.57 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=27.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 6 SVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 6 ~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
++...+|++. +.|++...+++.|.++|.+|+-++-
T Consensus 28 ~l~~~~v~I~---G~G~VG~~~a~~L~~~g~~vv~v~D 62 (227)
T cd01076 28 GLAGARVAIQ---GFGNVGSHAARFLHEAGAKVVAVSD 62 (227)
T ss_pred CccCCEEEEE---CCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 3555677776 5699988889999999999986643
No 248
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=21.09 E-value=86 Score=24.38 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=19.6
Q ss_pred ccchHHHHHHHhCCceEEEeccc
Q 048768 94 FMSFAIDVARVVGISIFYFRTIR 116 (151)
Q Consensus 94 ~~~w~~~vA~~lgIP~v~f~t~~ 116 (151)
.+-++.++|+++|.+.+++++..
T Consensus 85 ~l~~~i~~A~~lGa~~vv~h~g~ 107 (273)
T smart00518 85 RLIDEIKRCEELGIKALVFHPGS 107 (273)
T ss_pred HHHHHHHHHHHcCCCEEEEcccc
Confidence 35578999999999999998864
No 249
>PLN00016 RNA-binding protein; Provisional
Probab=21.01 E-value=1.5e+02 Score=24.27 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=26.0
Q ss_pred eEEEE--cCCChhHHHHHHHHHHHhCCCEEEEEeCC
Q 048768 11 YVLIW--PLAALGHVMLKLAELLCNAGVKITFLNTE 44 (151)
Q Consensus 11 hvv~v--P~p~~GHi~l~Lak~La~~G~~VT~v~t~ 44 (151)
.|+++ -+-+.|-+.-+|+++|.++|+.|+.++-.
T Consensus 54 ~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 54 KVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred eEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 46665 12456777889999999999999998754
No 250
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=20.87 E-value=2.8e+02 Score=22.16 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=25.0
Q ss_pred eEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeCC
Q 048768 11 YVLIWPLAALGHVMLKLAELLCNAGVKITFLNTE 44 (151)
Q Consensus 11 hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t~ 44 (151)
+|.++ |.|.+...+|+.|+..|+.|++....
T Consensus 6 ~I~ii---G~G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 6 TIAIL---GAGAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred EEEEE---CccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45554 78888888999999999999988653
No 251
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.71 E-value=2.7e+02 Score=18.93 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=28.4
Q ss_pred CCeEEEEcCC--ChhHH-HHHHHHHHHhCCCEEEEEeCCCchhHHh
Q 048768 9 YPYVLIWPLA--ALGHV-MLKLAELLCNAGVKITFLNTEEFHDRLI 51 (151)
Q Consensus 9 ~~hvv~vP~p--~~GHi-~l~Lak~La~~G~~VT~v~t~~~~~~~~ 51 (151)
...|+++|.. -...- .+++++.|-+.|++|.+-...+..+++.
T Consensus 26 p~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~~sl~kqlk 71 (121)
T cd00858 26 PIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDSGSIGRRYA 71 (121)
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHH
Confidence 4467888875 23333 8999999999999988854333333443
No 252
>COG1158 Rho Transcription termination factor [Transcription]
Probab=20.65 E-value=1.3e+02 Score=25.65 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=27.8
Q ss_pred CCeEEEEcC--CChhHH-----HHHHHHHHHhCCCEEEEEe
Q 048768 9 YPYVLIWPL--AALGHV-----MLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 9 ~~hvv~vP~--p~~GHi-----~l~Lak~La~~G~~VT~v~ 42 (151)
+..|+.=.| |+.-|+ .++-||+|+++|-+|.++.
T Consensus 226 ~geViaSTFDepp~~HvqVAE~viEkAKRlVE~~kDVVILL 266 (422)
T COG1158 226 KGEVVASTFDEPPSRHVQVAEMVIEKAKRLVEHGKDVVILL 266 (422)
T ss_pred cceEEeecCCCcchhhHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 356666666 889999 7888999999999988874
No 253
>PRK07814 short chain dehydrogenase; Provisional
Probab=20.64 E-value=2.8e+02 Score=21.10 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=25.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeC
Q 048768 4 RNSVSYPYVLIWPLAALGHVMLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 4 ~~~m~~~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t 43 (151)
+..|+...+++. - +-|-+..++++.|+++|++|..+..
T Consensus 5 ~~~~~~~~vlIt-G-asggIG~~~a~~l~~~G~~Vi~~~r 42 (263)
T PRK07814 5 RFRLDDQVAVVT-G-AGRGLGAAIALAFAEAGADVLIAAR 42 (263)
T ss_pred cccCCCCEEEEE-C-CCChHHHHHHHHHHHCCCEEEEEeC
Confidence 334554444433 3 4566788999999999999877654
No 254
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=20.45 E-value=1e+02 Score=25.70 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=35.7
Q ss_pred CCCCCCCC----CeEEEEcCCChhHH------HHHHHHHHHhCCCEEEEEeCCCch
Q 048768 2 RDRNSVSY----PYVLIWPLAALGHV------MLKLAELLCNAGVKITFLNTEEFH 47 (151)
Q Consensus 2 ~~~~~m~~----~hvv~vP~p~~GHi------~l~Lak~La~~G~~VT~v~t~~~~ 47 (151)
-||-+|+. +-+.+=|.|..|+. ..+.-+.|-+.|+++.++-|-.--
T Consensus 100 GDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvG 155 (323)
T COG1703 100 GDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVG 155 (323)
T ss_pred ccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCC
Confidence 46666664 45999999999999 666667777899999999776544
No 255
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=20.44 E-value=1.1e+02 Score=29.62 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=21.3
Q ss_pred hHH--HHHHHHHHHhCC--CEEEEEeCCCc
Q 048768 21 GHV--MLKLAELLCNAG--VKITFLNTEEF 46 (151)
Q Consensus 21 GHi--~l~Lak~La~~G--~~VT~v~t~~~ 46 (151)
|+. .++||+.|+++| ++|+++|-...
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~~~ 225 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQVS 225 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCCcC
Confidence 466 899999999997 79999976443
No 256
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=20.31 E-value=2.8e+02 Score=20.87 Aligned_cols=39 Identities=23% Similarity=0.443 Sum_probs=31.8
Q ss_pred EEEEcCCChhHH--HHHHHHHHHhC-CCEEEEEeCCCchhHH
Q 048768 12 VLIWPLAALGHV--MLKLAELLCNA-GVKITFLNTEEFHDRL 50 (151)
Q Consensus 12 vv~vP~p~~GHi--~l~Lak~La~~-G~~VT~v~t~~~~~~~ 50 (151)
+++.-.|+.|=. +++++..++.+ |.+|.|++.+.....+
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~ 57 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQL 57 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHH
Confidence 556667888888 89999999887 9999999988766543
No 257
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=20.30 E-value=2.7e+02 Score=23.66 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=22.3
Q ss_pred ChhHHHHHHHHHHHhCCCEEEEEeCC
Q 048768 19 ALGHVMLKLAELLCNAGVKITFLNTE 44 (151)
Q Consensus 19 ~~GHi~l~Lak~La~~G~~VT~v~t~ 44 (151)
+.|-+...+|++|+++|.+|+++..+
T Consensus 212 SSG~~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 212 SSGKMGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred CcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 47778889999999999999998644
No 258
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.26 E-value=2.5e+02 Score=22.91 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=28.2
Q ss_pred CCCCCeEEEEcCCChhHH-HHHHHHHHHhCCCEEEEEeC
Q 048768 6 SVSYPYVLIWPLAALGHV-MLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 6 ~m~~~hvv~vP~p~~GHi-~l~Lak~La~~G~~VT~v~t 43 (151)
+.+..+|+++ +.|.+ -..+|..|..+|..||++.+
T Consensus 154 ~l~Gk~vvVv---Grs~~VG~Pla~lL~~~gAtVtv~hs 189 (285)
T PRK14191 154 EIKGKDVVII---GASNIVGKPLAMLMLNAGASVSVCHI 189 (285)
T ss_pred CCCCCEEEEE---CCCchhHHHHHHHHHHCCCEEEEEeC
Confidence 3445677777 57878 99999999999999999854
No 259
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=20.25 E-value=1.4e+02 Score=23.29 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=20.4
Q ss_pred ChhHHHHHHHHHHHhCCCEEEEEeCC
Q 048768 19 ALGHVMLKLAELLCNAGVKITFLNTE 44 (151)
Q Consensus 19 ~~GHi~l~Lak~La~~G~~VT~v~t~ 44 (151)
+-|..-+-.|..|+++|.+||++--.
T Consensus 6 GaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 6 GAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp CTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 44656677888899999999999544
No 260
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=20.18 E-value=1.6e+02 Score=21.19 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=19.6
Q ss_pred CChhHHHHHHHHHHHhCCCEEEEEe
Q 048768 18 AALGHVMLKLAELLCNAGVKITFLN 42 (151)
Q Consensus 18 p~~GHi~l~Lak~La~~G~~VT~v~ 42 (151)
-+.|.+-..+|++|+++|++|+...
T Consensus 7 IGlG~mG~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 7 IGLGNMGSAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp E--SHHHHHHHHHHHHTTTEEEEEE
T ss_pred EchHHHHHHHHHHHHhcCCeEEeec
Confidence 3557677788999999999999886
No 261
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=20.07 E-value=2.4e+02 Score=17.59 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=24.1
Q ss_pred eEEEEcCCC---hhHH-HHHHHHHHHhCCCEEEEEeC
Q 048768 11 YVLIWPLAA---LGHV-MLKLAELLCNAGVKITFLNT 43 (151)
Q Consensus 11 hvv~vP~p~---~GHi-~l~Lak~La~~G~~VT~v~t 43 (151)
+|+++|..- ...- .+++++.|-..|+.|.+-..
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~ 39 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDR 39 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCC
Confidence 578888654 3333 88999999999998887543
No 262
>PRK06370 mercuric reductase; Validated
Probab=20.02 E-value=2.2e+02 Score=24.15 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=26.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHHHhCCCEEEEEeCC
Q 048768 10 PYVLIWPLAALGHVMLKLAELLCNAGVKITFLNTE 44 (151)
Q Consensus 10 ~hvv~vP~p~~GHi~l~Lak~La~~G~~VT~v~t~ 44 (151)
.+|+++ +-|.+.+++|..|++.|.+||++...
T Consensus 172 ~~vvVI---GgG~~g~E~A~~l~~~G~~Vtli~~~ 203 (463)
T PRK06370 172 EHLVII---GGGYIGLEFAQMFRRFGSEVTVIERG 203 (463)
T ss_pred CEEEEE---CCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence 367776 67877999999999999999999643
Done!