BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048770
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BJ7|A Chain A, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ7|B Chain B, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ7|C Chain C, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ7|D Chain D, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ8|A Chain A, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ8|B Chain B, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ8|C Chain C, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ8|D Chain D, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
Length = 171
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 117 ASEMSKTNFAESKGSIVGFVHFRFCLEEDV-PVLYVYELQLESRVQGKGLGKFLMQLIEL 175
+E+ K ++ SIVGF + F + + +LY+ + + S +G G+G +++ +
Sbjct: 56 VAEVPKEHWTPEGHSIVGFAMYYFTYDPWIGKLLYLEDFFVMSDYRGFGIGSEILKNLSQ 115
Query: 176 IARKNRMGAVVLTVQKANLLAMNFY 200
+A K R ++ V + N ++NFY
Sbjct: 116 VAMKCRCSSMHFLVAEWNEPSINFY 140
>pdb|2B3U|A Chain A, Human Spermine Spermidine Acetyltransferase K26r Mutant
pdb|2B3U|B Chain B, Human Spermine Spermidine Acetyltransferase K26r Mutant
pdb|2B3V|A Chain A, Spermine Spermidine Acetyltransferase In Complex With
Acetylcoa, K26r Mutant
pdb|2B4B|A Chain A, Ssat+coa+be-3-3-3, K6r Mutant
pdb|2B4B|B Chain B, Ssat+coa+be-3-3-3, K6r Mutant
pdb|2B58|A Chain A, Ssat With Coa_sp, Spermine Disordered, K26r Mutant
Length = 171
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 118 SEMSKTNFAESKGSIVGFVHFRFCLEEDV-PVLYVYELQLESRVQGKGLGKFLMQLIELI 176
+E+ K ++ SIVGF + F + + +LY+ + + S +G G+G +++ + +
Sbjct: 57 AEVPKEHWTPEGHSIVGFAXYYFTYDPWIGKLLYLEDFFVXSDYRGFGIGSEILKNLSQV 116
Query: 177 ARKNRMGAVVLTVQKANLLAMNFY 200
A + R + V + N ++NFY
Sbjct: 117 AXRCRCSSXHFLVAEWNEPSINFY 140
>pdb|2B4D|A Chain A, Ssat+coa+sp- Sp Disordered
pdb|2B5G|A Chain A, Wild Type Ssat- 1.7a Structure
Length = 171
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 118 SEMSKTNFAESKGSIVGFVHFRFCLEEDV-PVLYVYELQLESRVQGKGLGKFLMQLIELI 176
+E+ K ++ SIVGF + F + + +LY+ + + S +G G+G +++ + +
Sbjct: 57 AEVPKEHWTPEGHSIVGFAXYYFTYDPWIGKLLYLEDFFVXSDYRGFGIGSEILKNLSQV 116
Query: 177 ARKNRMGAVVLTVQKANLLAMNFY 200
A + R + V + N ++NFY
Sbjct: 117 AXRCRCSSXHFLVAEWNEPSINFY 140
>pdb|2B4D|B Chain B, Ssat+coa+sp- Sp Disordered
pdb|2B5G|B Chain B, Wild Type Ssat- 1.7a Structure
Length = 171
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 118 SEMSKTNFAESKGSIVGFVHFRFCLEEDV-PVLYVYELQLESRVQGKGLGKFLMQLIELI 176
+E+ K ++ SIVGF + F + + +LY+ + + S +G G+G +++ + +
Sbjct: 57 AEVPKEHWTPEGHSIVGFAXYYFTYDPWIGKLLYLEDFFVXSDYRGFGIGSEILKNLSQV 116
Query: 177 ARKNRMGAVVLTVQKANLLAMNFY 200
A + R + V + N ++NFY
Sbjct: 117 AXRCRCSSXHFLVAEWNEPSINFY 140
>pdb|2JEV|A Chain A, Crystal Structure Of Human Spermine,Spermidine
Acetyltransferase In Complex With A Bisubstrate Analog
(N1- Acetylspermine-S-Coa).
pdb|2JEV|B Chain B, Crystal Structure Of Human Spermine,Spermidine
Acetyltransferase In Complex With A Bisubstrate Analog
(N1- Acetylspermine-S-Coa)
Length = 174
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 117 ASEMSKTNFAESKGSIVGFVHFRFCLEEDV-PVLYVYELQLESRVQGKGLGKFLMQLIEL 175
+E+ K ++ SIVGF + F + + +LY+ + + S +G G+G +++ +
Sbjct: 59 VAEVPKEHWTPEGHSIVGFAMYYFTYDPWIGKLLYLEDFFVMSDYRGFGIGSEILKNLSQ 118
Query: 176 IARKNRMGAVVLTVQKANLLAMNFY 200
+A + R ++ V + N ++NFY
Sbjct: 119 VAMRCRCSSMHFLVAEWNEPSINFY 143
>pdb|2FXF|A Chain A, Human SpermidineSPERMINE N1-Acetyltransferase
pdb|2FXF|B Chain B, Human SpermidineSPERMINE N1-Acetyltransferase
Length = 170
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 117 ASEMSKTNFAESKGSIVGFVHFRFCLEEDV-PVLYVYELQLESRVQGKGLGKFLMQLIEL 175
+E+ K ++ SIVGF + F + + +LY+ + + S +G G+G +++ +
Sbjct: 55 VAEVPKEHWTPEGHSIVGFAMYYFTYDPWIGKLLYLEDFFVMSDYRGFGIGSEILKNLSQ 114
Query: 176 IARKNRMGAVVLTVQKANLLAMNFY 200
+A + R ++ V + N ++NFY
Sbjct: 115 VAMRCRCSSMHFLVAEWNEPSINFY 139
>pdb|2F5I|A Chain A, X-Ray Structure Of SpermidineSPERMINE N1-Acetyltransferase
(Sat) From Homo Sapiens
pdb|2F5I|B Chain B, X-Ray Structure Of SpermidineSPERMINE N1-Acetyltransferase
(Sat) From Homo Sapiens
pdb|2G3T|A Chain A, Crsytal Structure Of Human SpermidineSPERMINE N1-
Acetyltransferase (Hssat)
pdb|2G3T|B Chain B, Crsytal Structure Of Human SpermidineSPERMINE N1-
Acetyltransferase (Hssat)
Length = 179
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 117 ASEMSKTNFAESKGSIVGFVHFRFCLEEDV-PVLYVYELQLESRVQGKGLGKFLMQLIEL 175
+E+ K ++ SIVGF + F + + +LY+ + + S +G G+G +++ +
Sbjct: 56 VAEVPKEHWTPEGHSIVGFAMYYFTYDPWIGKLLYLEDFFVMSDYRGFGIGSEILKNLSQ 115
Query: 176 IARKNRMGAVVLTVQKANLLAMNFY 200
+A + R ++ V + N ++NFY
Sbjct: 116 VAMRCRCSSMHFLVAEWNEPSINFY 140
>pdb|1WWZ|A Chain A, Crystal Structure Of Ph1933 From Pyrococcus Horikoshii Ot3
pdb|1WWZ|B Chain B, Crystal Structure Of Ph1933 From Pyrococcus Horikoshii Ot3
Length = 159
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 18/81 (22%)
Query: 121 SKTNFAESKGSIVGFVHFRFCLEEDVPVLYVYELQLESRVQGKGLG-KFLMQLIELIARK 179
K F++ +G IVG +H E ++ + QGKG+G K L+ ++ + +
Sbjct: 73 DKDWFSKYEGRIVGAIH---------------EFVVDKKFQGKGIGRKLLITCLDFLGKY 117
Query: 180 NRMGAVVLTVQKANLLAMNFY 200
N + L V + N AMN Y
Sbjct: 118 ND--TIELWVGEKNYGAMNLY 136
>pdb|3RQ0|A Chain A, The Crystal Structure Of A Glycosyl Hydrolases (Gh) Family
Protein 16 From Mycobacterium Smegmatis Str. Mc2 155
Length = 269
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 100 SEARYIFARELDAPSASASEMSKTNFAESKGSI 132
+ A Y+FA E D P+ SA +K A+++ +I
Sbjct: 37 TAASYVFADEFDGPAGSAPSAAKWTIAKARETI 69
>pdb|1VKC|A Chain A, Putative Acetyl Transferase From Pyrococcus Furiosus
pdb|1VKC|B Chain B, Putative Acetyl Transferase From Pyrococcus Furiosus
Length = 158
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 137 HFRFCLEED----VPVLYVYELQLESRVQGKGLGKFLMQLIELIARKNRMGAVVLTVQKA 192
H C+ D V + Y+Y++++ +G G+G L++ E A++ +VL V+
Sbjct: 76 HVWICITLDTVDYVKIAYIYDIEVVKWARGLGIGSALLRKAEEWAKERGAKKIVLRVEID 135
Query: 193 N 193
N
Sbjct: 136 N 136
>pdb|2GDU|A Chain A, E232q Mutant Of Sucrose Phosphorylase From Bifidobacterium
Adolescentis In Complex With Sucrose
pdb|2GDU|B Chain B, E232q Mutant Of Sucrose Phosphorylase From Bifidobacterium
Adolescentis In Complex With Sucrose
Length = 504
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 200 YLSKLRYVVSSISPSRVDPFTGVEKSYEILCKVFD 234
+ K R V S +P +VD T +K +E L +FD
Sbjct: 145 FAGKTRLVWVSFTPQQVDIDTDSDKGWEYLMSIFD 179
>pdb|1R7A|A Chain A, Sucrose Phosphorylase From Bifidobacterium Adolescentis
pdb|1R7A|B Chain B, Sucrose Phosphorylase From Bifidobacterium Adolescentis
Length = 504
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 200 YLSKLRYVVSSISPSRVDPFTGVEKSYEILCKVFD 234
+ K R V S +P +VD T +K +E L +FD
Sbjct: 145 FAGKTRLVWVSFTPQQVDIDTDSDKGWEYLMSIFD 179
>pdb|2GDV|A Chain A, Sucrose Phosphorylase From Bifidobacterium Adolescentis
Reacted With Sucrose
pdb|2GDV|B Chain B, Sucrose Phosphorylase From Bifidobacterium Adolescentis
Reacted With Sucrose
Length = 504
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 200 YLSKLRYVVSSISPSRVDPFTGVEKSYEILCKVFD 234
+ K R V S +P +VD T +K +E L +FD
Sbjct: 145 FAGKTRLVWVSFTPQQVDIDTDSDKGWEYLMSIFD 179
>pdb|2OS8|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 157
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 30 SAHKDHLTAFPSFRQYERNGLSV----HLESGCGDKLSSAEKQYILNL--LKANMEG 80
+ D++ AF +F + + +S H+ SG G++LS E I+NL L+ ++EG
Sbjct: 82 GTYADYMEAFKTFDREGQGFISGAELRHVLSGLGERLSDEEVDEIINLTDLQEDLEG 138
>pdb|3PN7|C Chain C, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|F Chain F, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|C Chain C, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|F Chain F, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TUY|C Chain C, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
pdb|3TUY|F Chain F, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
Length = 156
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 30 SAHKDHLTAFPSFRQYERNGLSV----HLESGCGDKLSSAEKQYILNL--LKANMEG 80
+ D++ AF +F + + +S H+ SG G++LS E I+NL L+ ++EG
Sbjct: 81 GTYADYMEAFKTFDREGQGFISGAELRHVLSGLGERLSDEEVDEIINLTDLQEDLEG 137
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 158 SRVQGKGLGKFLMQLIELIARKNRMGAVV-LTVQKANLLA---MNFYLSKLRYVVSSISP 213
+R++ + + +L + ++G + Q+A +L MN L K Y+ +
Sbjct: 654 NRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYI--KVEV 711
Query: 214 SRVDPFTGVEKSYEILCKVFDNESKAL 240
+ VD F G EK Y IL V NE +A+
Sbjct: 712 ASVDAFQGREKDYIILSCVRANEQQAI 738
>pdb|2EC6|C Chain C, Placopecten Striated Muscle Myosin Ii
Length = 156
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 34 DHLTAFPSFRQYERNGLSV----HLESGCGDKLSSAEKQYILNL--LKANMEG 80
D++ AF +F + + +S H+ SG G++LS E I+NL L+ ++EG
Sbjct: 85 DYMEAFKTFDREGQGFISGAELRHVLSGLGERLSDEEVDEIINLTDLQEDLEG 137
>pdb|4F6A|A Chain A, High-Resolution X-Ray Structure Of The Tetramutant Of
Bh1408 Protein From Bacillus Halodurans, Northeast
Structural Genomics Consortium (Nesg) Target Bhr182
pdb|4F6A|B Chain B, High-Resolution X-Ray Structure Of The Tetramutant Of
Bh1408 Protein From Bacillus Halodurans, Northeast
Structural Genomics Consortium (Nesg) Target Bhr182
Length = 156
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 148 VLYVYELQLESRVQGKGLGKFLMQLIELIARKNRMGAVVLTVQKANLLAMNFYLS 202
+Y+ +L ++ +G G+G+ + + I + +++ A+ L V N A FY S
Sbjct: 88 TVYISDLCVDETRRGGGIGRLIFEAIISYGKAHQVDAIELDVYDFNERAKRFYHS 142
>pdb|4E0A|A Chain A, Crystal Structure Of The Mutant F44r Bh1408 Protein From
Bacillus Halodurans, Northeast Structural Genomics
Consortium (Nesg) Target Bhr182
pdb|4E0A|B Chain B, Crystal Structure Of The Mutant F44r Bh1408 Protein From
Bacillus Halodurans, Northeast Structural Genomics
Consortium (Nesg) Target Bhr182
Length = 164
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 148 VLYVYELQLESRVQGKGLGKFLMQLIELIARKNRMGAVVLTVQKANLLAMNFYLS 202
+Y+ +L ++ +G G+G+ + + I + +++ A+ L V N A FY S
Sbjct: 88 TVYISDLCVDETRRGGGIGRLIFEAIISYGKAHQVDAIELDVYDFNDRAKAFYHS 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,943,699
Number of Sequences: 62578
Number of extensions: 222461
Number of successful extensions: 627
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 22
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)