Query 048771
Match_columns 814
No_of_seqs 387 out of 1579
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 13:01:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 7E-66 1.5E-70 531.3 17.9 187 155-344 1-229 (229)
2 PF08670 MEKHLA: MEKHLA domain 100.0 1.6E-59 3.6E-64 455.7 16.8 148 667-814 1-148 (148)
3 KOG0483 Transcription factor H 99.7 6.5E-17 1.4E-21 164.7 8.3 104 13-124 49-152 (198)
4 smart00234 START in StAR and p 99.6 1.7E-14 3.8E-19 146.4 20.0 179 161-344 2-205 (206)
5 PF01852 START: START domain; 99.6 2.4E-14 5.2E-19 145.1 15.4 178 160-341 1-201 (206)
6 KOG0843 Transcription factor E 99.5 1.6E-14 3.5E-19 142.8 4.9 64 13-80 101-164 (197)
7 KOG0488 Transcription factor B 99.5 1.4E-14 3.1E-19 157.4 4.8 65 11-79 169-233 (309)
8 KOG0842 Transcription factor t 99.5 2.6E-14 5.6E-19 153.6 5.9 69 11-83 150-218 (307)
9 KOG0489 Transcription factor z 99.5 1.2E-14 2.6E-19 154.9 2.8 62 12-77 157-218 (261)
10 KOG0487 Transcription factor A 99.5 2.9E-14 6.3E-19 153.3 4.3 68 12-83 233-300 (308)
11 KOG0492 Transcription factor M 99.4 2.3E-13 5E-18 137.1 5.8 63 11-77 141-203 (246)
12 KOG0850 Transcription factor D 99.4 2.6E-13 5.7E-18 138.9 4.8 65 8-76 116-180 (245)
13 KOG0848 Transcription factor C 99.4 1.2E-13 2.7E-18 143.4 2.3 58 16-77 201-258 (317)
14 KOG0484 Transcription factor P 99.4 1.6E-13 3.6E-18 124.6 2.5 60 13-76 16-75 (125)
15 PF00046 Homeobox: Homeobox do 99.4 2.9E-13 6.2E-18 111.3 3.1 57 15-75 1-57 (57)
16 KOG0485 Transcription factor N 99.4 4.1E-13 8.8E-18 136.0 4.3 62 11-76 101-162 (268)
17 KOG0493 Transcription factor E 99.3 6.9E-13 1.5E-17 137.2 3.8 63 10-76 242-304 (342)
18 KOG0494 Transcription factor C 99.3 1.2E-12 2.6E-17 135.5 4.7 58 18-79 145-202 (332)
19 KOG2251 Homeobox transcription 99.3 2.4E-12 5.2E-17 131.4 4.8 65 10-78 33-97 (228)
20 COG5576 Homeodomain-containing 99.2 1.7E-11 3.8E-16 121.3 5.7 65 9-77 46-110 (156)
21 smart00389 HOX Homeodomain. DN 99.2 1.4E-11 3E-16 100.5 3.2 55 16-74 2-56 (56)
22 cd00086 homeodomain Homeodomai 99.2 2.1E-11 4.6E-16 100.0 3.7 56 16-75 2-57 (59)
23 TIGR01565 homeo_ZF_HD homeobox 99.1 8.3E-11 1.8E-15 98.1 5.2 52 15-70 2-57 (58)
24 KOG0847 Transcription factor, 99.1 4E-11 8.7E-16 121.7 2.2 64 12-79 165-228 (288)
25 KOG0486 Transcription factor P 99.1 8.6E-11 1.9E-15 125.0 4.6 64 13-80 111-174 (351)
26 KOG0844 Transcription factor E 99.1 5.7E-11 1.2E-15 125.5 2.4 58 15-76 182-239 (408)
27 KOG0491 Transcription factor B 99.0 3.2E-11 7E-16 117.9 -0.2 62 14-79 100-161 (194)
28 KOG3802 Transcription factor O 99.0 1.8E-10 3.8E-15 126.7 4.8 60 13-76 293-352 (398)
29 KOG4577 Transcription factor L 99.0 2.2E-10 4.8E-15 120.3 4.7 61 11-75 164-224 (383)
30 cd00177 START Lipid-binding ST 98.9 2.4E-08 5.2E-13 99.0 15.9 164 164-341 2-189 (193)
31 cd08868 START_STARD1_3_like Ch 98.9 6.8E-08 1.5E-12 99.5 18.8 175 158-346 6-208 (208)
32 cd08904 START_STARD6-like Lipi 98.9 3.3E-08 7.2E-13 102.3 16.1 150 159-318 4-180 (204)
33 cd08867 START_STARD4_5_6-like 98.8 3.1E-07 6.8E-12 94.5 18.2 171 158-341 3-202 (206)
34 cd08871 START_STARD10-like Lip 98.8 2.9E-07 6.2E-12 95.8 17.5 171 162-347 8-204 (222)
35 KOG0490 Transcription factor, 98.7 9.1E-09 2E-13 106.4 4.0 62 12-77 58-119 (235)
36 cd08905 START_STARD1-like Chol 98.6 1.6E-06 3.4E-11 89.9 18.0 173 159-344 7-207 (209)
37 cd08903 START_STARD5-like Lipi 98.6 3.2E-06 6.9E-11 87.6 18.1 170 159-341 4-202 (208)
38 PLN00188 enhanced disease resi 98.5 1.6E-06 3.5E-11 102.4 14.2 109 205-317 227-365 (719)
39 cd08906 START_STARD3-like Chol 98.4 1.4E-05 3E-10 83.1 18.5 171 158-341 6-203 (209)
40 KOG1168 Transcription factor A 98.4 1.5E-07 3.2E-12 99.5 3.7 63 11-77 306-368 (385)
41 KOG0849 Transcription factor P 98.3 2.4E-07 5.2E-12 103.2 3.5 60 13-76 175-234 (354)
42 cd08869 START_RhoGAP C-termina 98.3 1.2E-05 2.5E-10 82.7 14.6 146 163-319 4-173 (197)
43 cd08909 START_STARD13-like C-t 98.2 1.8E-05 3.8E-10 82.2 13.9 108 205-319 52-181 (205)
44 cd08902 START_STARD4-like Lipi 98.1 7.6E-05 1.7E-09 77.0 15.3 157 159-330 4-187 (202)
45 KOG0775 Transcription factor S 98.0 3.1E-06 6.6E-11 89.5 3.8 51 21-75 183-233 (304)
46 PF13426 PAS_9: PAS domain; PD 97.9 9.9E-05 2.1E-09 64.6 9.7 101 707-810 1-101 (104)
47 cd08908 START_STARD12-like C-t 97.7 0.00038 8.3E-09 72.4 13.0 147 161-319 10-180 (204)
48 cd08874 START_STARD9-like C-te 97.7 0.00038 8.3E-09 72.4 11.6 108 207-319 47-182 (205)
49 cd08910 START_STARD2-like Lipi 97.6 0.00089 1.9E-08 69.5 12.6 134 202-344 46-205 (207)
50 cd08907 START_STARD8-like C-te 97.4 0.0005 1.1E-08 71.2 9.0 149 161-319 10-181 (205)
51 KOG0774 Transcription factor P 97.4 9.4E-05 2E-09 77.9 2.9 58 14-75 188-248 (334)
52 cd08877 START_2 Uncharacterize 97.3 0.0087 1.9E-07 62.1 16.4 177 159-344 4-213 (215)
53 PF05920 Homeobox_KN: Homeobox 97.3 6.4E-05 1.4E-09 58.5 0.1 34 35-72 7-40 (40)
54 cd08872 START_STARD11-like Cer 97.2 0.005 1.1E-07 65.4 14.0 171 160-340 6-220 (235)
55 cd08873 START_STARD14_15-like 97.2 0.0026 5.7E-08 67.6 11.4 102 206-311 78-203 (235)
56 KOG0490 Transcription factor, 97.1 0.00039 8.5E-09 72.0 4.3 63 12-78 151-213 (235)
57 cd08876 START_1 Uncharacterize 97.1 0.0083 1.8E-07 60.8 13.1 127 205-341 41-191 (195)
58 cd08870 START_STARD2_7-like Li 97.0 0.044 9.5E-07 56.9 17.9 169 165-344 7-207 (209)
59 KOG2252 CCAAT displacement pro 97.0 0.00054 1.2E-08 78.9 3.9 58 13-74 419-476 (558)
60 PF00989 PAS: PAS fold; Inter 96.9 0.012 2.6E-07 52.3 11.2 108 699-809 2-111 (113)
61 cd08911 START_STARD7-like Lipi 96.8 0.018 4E-07 59.7 12.9 130 205-344 45-205 (207)
62 cd08913 START_STARD14-like Lip 96.7 0.014 3.1E-07 62.3 11.6 106 208-319 84-214 (240)
63 PF08448 PAS_4: PAS fold; Int 96.5 0.021 4.6E-07 50.4 9.8 104 705-812 3-106 (110)
64 cd08914 START_STARD15-like Lip 96.4 0.025 5.4E-07 60.2 10.9 113 205-324 78-215 (236)
65 PRK13557 histidine kinase; Pro 96.1 0.042 9.1E-07 62.8 11.8 112 697-809 29-142 (540)
66 cd08871 START_STARD10-like Lip 95.6 0.93 2E-05 47.3 18.4 65 374-459 13-79 (222)
67 KOG1146 Homeobox protein [Gene 94.9 0.018 3.9E-07 72.3 3.4 61 15-79 904-964 (1406)
68 PRK13559 hypothetical protein; 94.7 0.21 4.6E-06 54.8 11.0 113 697-810 42-156 (361)
69 cd08904 START_STARD6-like Lipi 94.5 2.2 4.7E-05 44.7 17.2 174 384-649 20-203 (204)
70 cd08869 START_RhoGAP C-termina 94.2 1.7 3.8E-05 44.8 15.7 131 384-568 17-152 (197)
71 TIGR00229 sensory_box PAS doma 93.8 0.98 2.1E-05 36.9 10.6 107 700-810 5-113 (124)
72 PRK11091 aerobic respiration c 93.0 0.56 1.2E-05 57.4 11.3 110 698-810 155-265 (779)
73 KOG0773 Transcription factor M 93.0 0.06 1.3E-06 59.9 2.7 58 14-75 239-299 (342)
74 cd08874 START_STARD9-like C-te 92.8 0.71 1.5E-05 48.3 10.0 56 383-459 19-76 (205)
75 cd08877 START_2 Uncharacterize 92.7 5.7 0.00012 41.3 16.7 72 365-459 4-77 (215)
76 cd08876 START_1 Uncharacterize 92.7 8.9 0.00019 38.8 17.7 60 380-459 10-72 (195)
77 PRK09413 IS2 repressor TnpA; R 92.7 0.19 4E-06 48.0 5.1 94 16-122 8-102 (121)
78 TIGR02938 nifL_nitrog nitrogen 92.1 0.61 1.3E-05 52.3 9.1 110 698-810 4-114 (494)
79 cd00130 PAS PAS domain; PAS mo 91.8 2.8 6.1E-05 32.1 10.2 98 707-808 2-100 (103)
80 cd00177 START Lipid-binding ST 91.5 4.2 9.1E-05 40.1 13.5 126 386-567 15-148 (193)
81 PF00170 bZIP_1: bZIP transcri 91.1 0.88 1.9E-05 38.6 7.0 46 69-114 18-63 (64)
82 PF11569 Homez: Homeodomain le 90.8 0.085 1.8E-06 44.2 0.4 42 25-70 9-50 (56)
83 cd08907 START_STARD8-like C-te 90.7 25 0.00054 37.1 19.4 58 383-459 24-81 (205)
84 smart00340 HALZ homeobox assoc 89.8 0.67 1.4E-05 36.6 4.5 33 77-113 2-34 (44)
85 PRK13558 bacterio-opsin activa 89.3 2.5 5.5E-05 50.8 11.5 105 705-810 156-261 (665)
86 PRK13560 hypothetical protein; 89.3 2.2 4.7E-05 51.6 11.0 109 700-810 206-316 (807)
87 TIGR02040 PpsR-CrtJ transcript 88.8 2.7 5.9E-05 47.9 10.8 84 699-784 134-218 (442)
88 cd08868 START_STARD1_3_like Ch 88.7 14 0.00029 38.3 14.9 131 384-569 22-161 (208)
89 TIGR02040 PpsR-CrtJ transcript 88.5 2.1 4.7E-05 48.8 9.7 94 700-798 254-349 (442)
90 PF13188 PAS_8: PAS domain; PD 88.4 0.57 1.2E-05 38.6 3.7 40 699-744 2-42 (64)
91 KOG4196 bZIP transcription fac 86.5 5.9 0.00013 38.7 9.7 39 18-72 21-59 (135)
92 cd08909 START_STARD13-like C-t 86.3 12 0.00026 39.3 12.8 129 386-568 27-160 (205)
93 smart00234 START in StAR and p 85.4 15 0.00033 37.3 12.9 106 427-569 43-158 (206)
94 cd08908 START_STARD12-like C-t 85.0 31 0.00067 36.3 15.1 54 387-459 28-81 (204)
95 KOG4005 Transcription factor X 84.8 2.7 5.8E-05 44.8 7.0 57 66-122 81-142 (292)
96 cd08906 START_STARD3-like Chol 84.4 22 0.00048 37.2 13.8 71 367-459 8-81 (209)
97 smart00338 BRLZ basic region l 84.2 4 8.6E-05 34.7 6.7 34 89-122 31-64 (65)
98 cd08913 START_STARD14-like Lip 83.5 16 0.00036 39.2 12.6 55 383-459 56-112 (240)
99 PRK11073 glnL nitrogen regulat 82.8 3.6 7.8E-05 44.7 7.5 91 700-796 10-100 (348)
100 PRK11359 cyclic-di-GMP phospho 82.4 7.7 0.00017 47.3 10.9 102 706-810 145-247 (799)
101 PRK09776 putative diguanylate 82.2 6.3 0.00014 49.9 10.4 109 697-808 282-392 (1092)
102 PF02183 HALZ: Homeobox associ 82.0 4.5 9.7E-05 32.6 5.8 41 82-122 3-43 (45)
103 PRK10060 RNase II stability mo 80.9 8.6 0.00019 46.8 10.5 87 700-788 113-201 (663)
104 PF08447 PAS_3: PAS fold; Int 79.9 10 0.00023 32.6 8.1 82 722-805 2-88 (91)
105 PF01852 START: START domain; 79.6 23 0.00049 35.9 11.6 148 368-567 2-156 (206)
106 cd08870 START_STARD2_7-like Li 79.1 25 0.00055 36.5 11.9 58 385-459 21-82 (209)
107 cd08873 START_STARD14_15-like 78.6 3.4 7.4E-05 44.3 5.4 55 383-459 52-108 (235)
108 cd08875 START_ArGLABRA2_like C 78.1 18 0.0004 38.7 10.6 163 364-567 3-180 (229)
109 KOG3623 Homeobox transcription 74.7 2 4.3E-05 51.9 2.5 48 26-77 568-615 (1007)
110 cd08911 START_STARD7-like Lipi 74.5 48 0.001 34.5 12.5 57 384-459 19-77 (207)
111 PRK11360 sensory histidine kin 73.1 27 0.0006 40.2 11.3 107 699-810 263-370 (607)
112 KOG4196 bZIP transcription fac 72.9 9.2 0.0002 37.4 6.1 29 94-122 77-105 (135)
113 PF07716 bZIP_2: Basic region 72.6 11 0.00023 31.1 5.7 18 103-120 30-47 (54)
114 cd08910 START_STARD2-like Lipi 72.5 7.8 0.00017 40.4 6.1 58 383-459 22-81 (207)
115 PRK00888 ftsB cell division pr 72.0 8 0.00017 36.4 5.4 45 61-105 16-62 (105)
116 PF04218 CENP-B_N: CENP-B N-te 71.3 3.6 7.7E-05 33.9 2.6 47 15-70 1-47 (53)
117 KOG3119 Basic region leucine z 71.0 8.4 0.00018 42.1 6.1 28 94-121 225-252 (269)
118 PRK09776 putative diguanylate 70.8 23 0.00049 45.0 10.8 107 700-810 538-650 (1092)
119 TIGR00219 mreC rod shape-deter 70.4 7.9 0.00017 42.5 5.8 35 89-123 71-109 (283)
120 cd08914 START_STARD15-like Lip 70.4 7.7 0.00017 41.7 5.5 55 383-459 53-109 (236)
121 PRK13922 rod shape-determining 66.9 15 0.00033 39.7 7.1 36 88-123 73-111 (276)
122 PRK11359 cyclic-di-GMP phospho 66.2 25 0.00055 42.9 9.6 102 700-805 15-120 (799)
123 PF06005 DUF904: Protein of un 65.2 28 0.0006 30.8 7.0 33 89-121 23-55 (72)
124 KOG4571 Activating transcripti 65.1 15 0.00032 40.6 6.3 35 87-121 251-285 (294)
125 PF13596 PAS_10: PAS domain; P 64.9 23 0.00049 32.0 6.8 97 706-810 8-104 (106)
126 smart00338 BRLZ basic region l 62.8 43 0.00094 28.4 7.6 45 70-114 19-63 (65)
127 cd08903 START_STARD5-like Lipi 62.5 14 0.0003 38.6 5.5 56 384-459 20-79 (208)
128 TIGR03752 conj_TIGR03752 integ 61.7 35 0.00075 40.2 8.9 26 20-48 41-66 (472)
129 cd08902 START_STARD4-like Lipi 61.4 2.2E+02 0.0048 30.1 18.2 57 383-459 20-78 (202)
130 smart00091 PAS PAS domain. PAS 61.0 32 0.00069 24.0 5.8 50 706-757 10-59 (67)
131 KOG4005 Transcription factor X 59.2 21 0.00046 38.2 6.1 47 76-122 103-149 (292)
132 PF06005 DUF904: Protein of un 58.6 34 0.00074 30.3 6.4 44 78-121 19-62 (72)
133 PF00170 bZIP_1: bZIP transcri 58.5 49 0.0011 28.0 7.2 35 87-121 29-63 (64)
134 cd08864 SRPBCC_DUF3074 DUF3074 58.3 36 0.00077 35.8 7.7 77 237-319 101-184 (208)
135 COG3074 Uncharacterized protei 58.2 52 0.0011 29.1 7.2 42 81-122 22-63 (79)
136 PRK15422 septal ring assembly 57.6 33 0.00072 31.0 6.1 44 79-122 20-63 (79)
137 cd08905 START_STARD1-like Chol 56.2 2E+02 0.0042 30.1 12.7 73 365-459 6-81 (209)
138 cd08872 START_STARD11-like Cer 56.0 36 0.00079 36.4 7.4 63 379-459 19-84 (235)
139 KOG4343 bZIP transcription fac 55.2 17 0.00038 42.9 5.0 33 94-126 305-337 (655)
140 TIGR02966 phoR_proteo phosphat 55.2 37 0.0008 35.9 7.4 78 700-787 8-86 (333)
141 PF07407 Seadorna_VP6: Seadorn 54.4 17 0.00037 40.5 4.6 28 542-569 337-374 (420)
142 PRK13560 hypothetical protein; 54.0 91 0.002 37.8 11.3 107 700-810 334-461 (807)
143 PRK11006 phoR phosphate regulo 53.5 28 0.00061 39.5 6.5 49 698-748 98-147 (430)
144 PF06156 DUF972: Protein of un 53.4 38 0.00082 32.2 6.2 43 84-126 15-57 (107)
145 KOG4571 Activating transcripti 53.2 35 0.00076 37.7 6.7 43 70-112 241-283 (294)
146 PRK13169 DNA replication intia 52.0 41 0.00088 32.2 6.2 41 84-124 15-55 (110)
147 KOG2761 START domain-containin 51.7 73 0.0016 34.0 8.6 91 214-309 63-183 (219)
148 KOG4343 bZIP transcription fac 50.6 36 0.00078 40.4 6.6 44 74-117 299-342 (655)
149 COG4026 Uncharacterized protei 49.7 60 0.0013 34.7 7.5 48 78-125 143-190 (290)
150 PF02183 HALZ: Homeobox associ 49.7 56 0.0012 26.4 5.7 34 79-112 7-40 (45)
151 KOG3119 Basic region leucine z 48.5 38 0.00082 37.1 6.2 32 94-125 218-249 (269)
152 KOG0709 CREB/ATF family transc 48.4 40 0.00087 39.4 6.5 39 89-127 277-315 (472)
153 PRK10884 SH3 domain-containing 47.8 61 0.0013 34.2 7.4 39 84-122 132-170 (206)
154 PLN00188 enhanced disease resi 47.4 1E+02 0.0022 38.2 10.0 97 439-569 236-342 (719)
155 PF01166 TSC22: TSC-22/dip/bun 46.4 27 0.00059 29.8 3.6 32 91-122 14-45 (59)
156 PRK10820 DNA-binding transcrip 45.7 1E+02 0.0022 36.8 9.6 100 700-810 82-184 (520)
157 TIGR02894 DNA_bind_RsfA transc 45.0 56 0.0012 33.3 6.2 38 84-121 104-141 (161)
158 PF14197 Cep57_CLD_2: Centroso 42.0 98 0.0021 27.2 6.6 37 86-122 28-64 (69)
159 PRK10884 SH3 domain-containing 41.3 71 0.0015 33.7 6.7 36 89-124 130-165 (206)
160 PF07407 Seadorna_VP6: Seadorn 40.2 50 0.0011 37.1 5.4 26 78-103 33-58 (420)
161 PF15035 Rootletin: Ciliary ro 40.1 78 0.0017 32.8 6.6 46 77-122 74-119 (182)
162 PRK13729 conjugal transfer pil 40.0 76 0.0016 37.5 7.1 46 78-123 77-122 (475)
163 TIGR02449 conserved hypothetic 39.8 1E+02 0.0023 26.9 6.2 34 88-121 11-44 (65)
164 PF10226 DUF2216: Uncharacteri 38.0 1.1E+02 0.0024 32.1 7.1 32 68-100 47-78 (195)
165 COG1415 Uncharacterized conser 37.6 1.3E+02 0.0028 34.4 8.1 125 653-790 8-161 (373)
166 cd08867 START_STARD4_5_6-like 37.5 85 0.0018 32.4 6.5 140 367-567 9-159 (206)
167 KOG0288 WD40 repeat protein Ti 37.4 1E+02 0.0022 35.8 7.5 46 78-123 28-73 (459)
168 PF15058 Speriolin_N: Sperioli 35.9 56 0.0012 34.2 4.7 38 88-126 9-46 (200)
169 TIGR03752 conj_TIGR03752 integ 35.7 74 0.0016 37.6 6.2 24 77-100 73-96 (472)
170 COG2202 AtoS FOG: PAS/PAC doma 35.6 3.1E+02 0.0068 24.2 9.2 79 703-783 118-198 (232)
171 PF08172 CASP_C: CASP C termin 35.5 97 0.0021 33.7 6.7 48 78-125 87-134 (248)
172 PF07716 bZIP_2: Basic region 35.5 2.5E+02 0.0054 23.0 7.7 30 70-99 18-47 (54)
173 PF12808 Mto2_bdg: Micro-tubul 35.3 58 0.0012 27.3 3.8 37 88-124 12-48 (52)
174 PF06785 UPF0242: Uncharacteri 35.0 1E+02 0.0022 34.8 6.8 61 65-125 54-119 (401)
175 KOG3335 Predicted coiled-coil 34.9 95 0.0021 32.1 6.1 42 81-122 103-144 (181)
176 PF10224 DUF2205: Predicted co 34.8 1.6E+02 0.0034 26.8 6.8 46 79-124 18-63 (80)
177 TIGR02894 DNA_bind_RsfA transc 34.5 1.1E+02 0.0024 31.2 6.5 47 77-123 104-150 (161)
178 PF04977 DivIC: Septum formati 34.3 64 0.0014 27.8 4.3 9 97-105 37-45 (80)
179 PHA03155 hypothetical protein; 33.4 44 0.00095 32.2 3.2 24 100-123 10-33 (115)
180 PF05812 Herpes_BLRF2: Herpesv 32.7 44 0.00094 32.4 3.1 27 99-125 4-30 (118)
181 cd07821 PYR_PYL_RCAR_like Pyra 32.6 1.1E+02 0.0024 28.0 6.0 25 291-315 90-114 (140)
182 COG1792 MreC Cell shape-determ 32.5 89 0.0019 34.5 6.0 37 89-125 71-110 (284)
183 PHA03162 hypothetical protein; 31.9 46 0.00099 32.8 3.2 24 100-123 15-38 (135)
184 PF14662 CCDC155: Coiled-coil 31.4 1.2E+02 0.0027 31.8 6.3 43 81-123 78-120 (193)
185 PF07558 Shugoshin_N: Shugoshi 31.0 39 0.00086 27.3 2.2 38 84-121 7-44 (46)
186 KOG4403 Cell surface glycoprot 30.0 80 0.0017 36.7 5.1 15 63-77 229-246 (575)
187 cd08866 SRPBCC_11 Ligand-bindi 29.5 1.3E+02 0.0029 28.2 6.0 48 293-344 94-143 (144)
188 cd04769 HTH_MerR2 Helix-Turn-H 29.3 2E+02 0.0042 27.2 7.0 81 17-119 34-114 (116)
189 KOG1146 Homeobox protein [Gene 29.2 16 0.00035 47.4 -0.5 54 18-75 448-501 (1406)
190 PF09744 Jnk-SapK_ap_N: JNK_SA 29.1 3.1E+02 0.0068 27.9 8.7 28 94-121 85-112 (158)
191 PF08826 DMPK_coil: DMPK coile 29.0 3.6E+02 0.0078 23.3 7.7 18 96-113 37-54 (61)
192 KOG1962 B-cell receptor-associ 28.5 1.4E+02 0.0031 31.9 6.4 19 83-101 150-168 (216)
193 PF04967 HTH_10: HTH DNA bindi 28.3 50 0.0011 27.6 2.4 37 21-61 1-39 (53)
194 PF14197 Cep57_CLD_2: Centroso 28.0 2.4E+02 0.0051 24.8 6.6 38 86-123 21-58 (69)
195 PF12711 Kinesin-relat_1: Kine 27.9 1.2E+02 0.0025 28.1 4.8 43 83-126 23-65 (86)
196 TIGR02209 ftsL_broad cell divi 27.7 1.2E+02 0.0026 26.7 5.0 22 101-122 34-55 (85)
197 PRK00888 ftsB cell division pr 27.7 1.5E+02 0.0032 28.0 5.8 35 78-112 28-62 (105)
198 PF13815 Dzip-like_N: Iguana/D 27.2 1.9E+02 0.0041 27.7 6.5 40 82-121 78-117 (118)
199 KOG2391 Vacuolar sorting prote 27.2 1.8E+02 0.0039 33.0 7.1 40 74-113 222-261 (365)
200 PF06637 PV-1: PV-1 protein (P 27.1 4.5E+02 0.0098 30.5 10.2 28 95-122 353-380 (442)
201 PF03670 UPF0184: Uncharacteri 26.2 2.2E+02 0.0048 26.1 6.3 47 78-124 27-73 (83)
202 COG4467 Regulator of replicati 26.2 1.9E+02 0.0042 27.7 6.1 43 81-123 12-54 (114)
203 PF10604 Polyketide_cyc2: Poly 25.6 2.1E+02 0.0046 26.2 6.5 20 292-312 89-108 (139)
204 PRK14872 rod shape-determining 25.6 1.4E+02 0.0031 33.9 6.1 41 78-122 58-98 (337)
205 KOG1962 B-cell receptor-associ 25.4 1.2E+02 0.0026 32.4 5.2 29 94-122 182-210 (216)
206 PF04880 NUDE_C: NUDE protein, 25.4 1E+02 0.0022 31.7 4.5 38 80-121 3-40 (166)
207 TIGR02449 conserved hypothetic 25.3 2.7E+02 0.0058 24.4 6.4 42 81-122 11-52 (65)
208 PRK15422 septal ring assembly 24.6 2.8E+02 0.006 25.3 6.5 45 76-120 24-68 (79)
209 PF06156 DUF972: Protein of un 24.1 1.9E+02 0.0042 27.5 5.8 37 89-125 13-49 (107)
210 PF00424 REV: REV protein (ant 24.0 99 0.0022 28.8 3.7 36 26-79 14-49 (91)
211 PF10481 CENP-F_N: Cenp-F N-te 24.0 3.7E+02 0.008 29.9 8.5 22 105-126 109-130 (307)
212 PF07888 CALCOCO1: Calcium bin 23.5 2.1E+02 0.0046 34.5 7.3 47 77-123 150-196 (546)
213 PF05529 Bap31: B-cell recepto 23.4 1.9E+02 0.0042 29.6 6.2 33 91-123 154-186 (192)
214 COG3879 Uncharacterized protei 22.8 1.4E+02 0.0031 32.4 5.2 61 66-126 39-103 (247)
215 PF06785 UPF0242: Uncharacteri 22.8 1.9E+02 0.0042 32.8 6.3 46 77-122 99-151 (401)
216 PF05529 Bap31: B-cell recepto 22.8 2.1E+02 0.0046 29.3 6.4 38 84-121 154-191 (192)
217 PTZ00454 26S protease regulato 22.5 1.9E+02 0.004 33.5 6.5 37 89-125 27-63 (398)
218 cd06171 Sigma70_r4 Sigma70, re 22.3 50 0.0011 25.0 1.4 44 19-71 9-52 (55)
219 PRK11086 sensory histidine kin 22.2 4E+02 0.0087 30.7 9.3 91 705-810 229-322 (542)
220 PF07334 IFP_35_N: Interferon- 22.1 1.4E+02 0.003 26.9 4.2 26 95-120 4-29 (76)
221 cd04765 HTH_MlrA-like_sg2 Heli 22.1 65 0.0014 29.8 2.3 19 103-121 81-99 (99)
222 PF10883 DUF2681: Protein of u 22.0 1.5E+02 0.0033 27.3 4.5 33 86-123 32-64 (87)
223 PTZ00454 26S protease regulato 22.0 2.3E+02 0.005 32.7 7.1 41 80-120 25-65 (398)
224 COG3074 Uncharacterized protei 21.9 3.3E+02 0.007 24.3 6.2 42 78-119 26-67 (79)
225 PF04999 FtsL: Cell division p 21.9 1.6E+02 0.0035 26.8 4.8 31 95-125 39-69 (97)
226 PRK11546 zraP zinc resistance 21.9 2.4E+02 0.0052 28.3 6.2 22 15-36 38-59 (143)
227 PF11932 DUF3450: Protein of u 20.9 2.8E+02 0.006 29.8 7.1 47 78-124 50-96 (251)
228 cd07813 COQ10p_like Coenzyme Q 20.5 2.5E+02 0.0054 26.4 6.0 51 291-345 86-137 (138)
229 PF06210 DUF1003: Protein of u 20.3 3.2E+02 0.007 26.0 6.5 25 86-110 75-99 (108)
230 KOG4797 Transcriptional regula 20.2 1.8E+02 0.0039 27.9 4.7 31 89-119 65-95 (123)
231 PF10211 Ax_dynein_light: Axon 20.1 3.2E+02 0.007 28.3 7.1 21 103-123 168-188 (189)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=7e-66 Score=531.32 Aligned_cols=187 Identities=36% Similarity=0.587 Sum_probs=169.9
Q ss_pred ccchHHHHHHHHHHHHHHhcCCCcceeeCCCCCC---CCCccceeec------cCCCcceeeeeeeEEeechhHHHHHhc
Q 048771 155 PAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKP---GPDSVGIVAI------SHGCSGVAARACGLVGLEPTRVAEILK 225 (814)
Q Consensus 155 ~~~l~~lA~~Am~Ell~la~~~eplWi~~~g~k~---g~d~~~~~~~------~~~~~~eAsR~~glV~~~~~~LVe~lm 225 (814)
+++|++||++||+||++||++++|+|++++|+|+ ++|+++..+. ..||.+||||+||+|+||+.+|||+||
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~lm 80 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEILM 80 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCCccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHHh
Confidence 4689999999999999999999999999999987 7888754432 236999999999999999999999999
Q ss_pred CCCC--------------------------CCc------eeeeccccccCceeeEEEeecccCCCcEEEEEeeccCCCCC
Q 048771 226 DRPR--------------------------GSA------ILYALTTLAPARDFWLLRYTSVLEDGSLVVCERSLKNIQNG 273 (814)
Q Consensus 226 D~~~--------------------------~G~------~M~a~SpLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~ 273 (814)
|+++ +|+ +||+||||||+|||||||||||++||+|||||||+|+.+.
T Consensus 81 D~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~- 159 (229)
T cd08875 81 DVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT- 159 (229)
T ss_pred ChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc-
Confidence 9998 244 4567999999999999999999999999999999998763
Q ss_pred CCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHH-HHHH
Q 048771 274 PTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAAL-RQLR 344 (814)
Q Consensus 274 ~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~L-r~~e 344 (814)
.++.++|+||||+|||||||||+|||||||||||+|||++.+|.+||++++||+||||+||+++| ||||
T Consensus 160 --~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 --APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred --CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 33445789999999999999999999999999999999999999999999999999999999999 7997
No 2
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=100.00 E-value=1.6e-59 Score=455.66 Aligned_cols=148 Identities=39% Similarity=0.605 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCcccc
Q 048771 667 PEALTLARWICHSYRCYLGVDLLKSSSEGSESILKNLWHHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEK 746 (814)
Q Consensus 667 pe~~~l~~~i~~Sy~~~~G~~L~~~~~~~~~~~~~~L~~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~ 746 (814)
||++.|+++|++||+++||++|+++...+.++.+++||+||||||||++++||+|||||++||+||||+|+||++||||+
T Consensus 1 pe~~~~~~~l~~SY~~~~G~~L~~~~~~~~~~~~~~L~~ap~ailsh~~~~dP~f~yaN~aaL~l~e~~w~el~~lPsr~ 80 (148)
T PF08670_consen 1 PEALALAQLLLQSYRRWTGRDLLPSDDSSAEELAKALWHAPFAILSHGTKADPIFIYANQAALDLFETTWDELVGLPSRL 80 (148)
T ss_pred ChHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHcCCCEEEEcCCCCCCEEEehhHHHHHHhcCCHHHHhcCcHhh
Confidence 79999999999999999999999997777789999999999999999999999999999999999999999999999999
Q ss_pred ccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCcEEEceeEEeEeecCCCceEEEEEeccCcccC
Q 048771 747 IFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV 814 (814)
Q Consensus 747 sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~W~~l 814 (814)
||||++|+||+++|++|++|||+++|+||||||+||||+|++|+||||+|++|+++||||||.||+||
T Consensus 81 sae~~~r~er~~lL~~v~~qG~~~~y~GiRiss~Grrf~ie~a~vW~l~D~~g~~~GqAa~F~~W~~l 148 (148)
T PF08670_consen 81 SAEEPERKERQSLLAQVMQQGYIDNYSGIRISSTGRRFRIERATVWNLIDEDGNYCGQAAMFSNWSFL 148 (148)
T ss_pred ccChhhHHHHHHHHHHHHHhCCccCCCeEEEcCCCCeEEEeceEEEEEEcCCCCEEEEEEEEeeeEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
No 3
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.68 E-value=6.5e-17 Score=164.72 Aligned_cols=104 Identities=36% Similarity=0.518 Sum_probs=95.0
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHHHHHHHHhhHHHHHh
Q 048771 13 LDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAM 92 (814)
Q Consensus 13 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe~~~l~~~n~~l~~~ 92 (814)
..++++.|||.+|+..||..|+...+..+.+|.+||++| ||.+|||+|||||||||||.++.+.++ +.|+.+
T Consensus 49 ~~~~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~L----gL~pRQVavWFQNRRARwK~kqlE~d~----~~Lk~~ 120 (198)
T KOG0483|consen 49 KGKGKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKEL----GLQPRQVAVWFQNRRARWKTKQLEKDY----ESLKRQ 120 (198)
T ss_pred ccccccccccHHHHHHhHHhhccccccChHHHHHHHHhh----CCChhHHHHHHhhccccccchhhhhhH----HHHHHH
Confidence 456788899999999999999999999999999999999 999999999999999999998877544 468999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhhhccc
Q 048771 93 NKLLMEENDRLQKQVSQLVYENGYFRQHTQST 124 (814)
Q Consensus 93 n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~ 124 (814)
++.++.++++|+.+++.|+.|...++.+.++.
T Consensus 121 ~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~~ 152 (198)
T KOG0483|consen 121 LESLRSENDRLQSEVQELVAELSSLKREMQKS 152 (198)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhhhhccC
Confidence 99999999999999999999988888777764
No 4
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.63 E-value=1.7e-14 Score=146.42 Aligned_cols=179 Identities=33% Similarity=0.461 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeeccCCCcceeeeeeeEEeechhH-HHHHhcCCCC----------
Q 048771 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAISHGCSGVAARACGLVGLEPTR-VAEILKDRPR---------- 229 (814)
Q Consensus 161 lA~~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~~~~~~~~~eAsR~~glV~~~~~~-LVe~lmD~~~---------- 229 (814)
.|++++.|+++++...+..|....+++.|..++.... ..+..+.+-|+.++|...+.+ +.++|+|...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~ 80 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENGDEVRSILS-PGRSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK 80 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCcceEEEEcc-CCCCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc
Confidence 3778899999999999999999765455554443321 112456899999999999997 6678888754
Q ss_pred --------CCc-eeee----ccccccCceeeEEEeecccCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCcceEEee
Q 048771 230 --------GSA-ILYA----LTTLAPARDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRP 296 (814)
Q Consensus 230 --------~G~-~M~a----~SpLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~ 296 (814)
.++ ..|. |-+.++.|||.++|++++.++|.|+|+..|++.. ..|+...++|+..++||++|++
T Consensus 81 ~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~----~~p~~~~~VR~~~~~~~~~i~p 156 (206)
T smart00234 81 AETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHP----TSPPTSGYVRAENLPSGLLIEP 156 (206)
T ss_pred EEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCC----CCCCCCCceEEEEeceEEEEEE
Confidence 333 2232 3214677999999999999999999999999853 3344567899999999999999
Q ss_pred CCCCceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHHH-HHH
Q 048771 297 CEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALR-QLR 344 (814)
Q Consensus 297 ~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~Lr-~~e 344 (814)
+++|.|+|||+.|+|..-+..+.+.+.++.++.....+++.++++ +|+
T Consensus 157 ~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T smart00234 157 LGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHCA 205 (206)
T ss_pred CCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999977889999999999999999999995 675
No 5
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.58 E-value=2.4e-14 Score=145.05 Aligned_cols=178 Identities=30% Similarity=0.402 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeeccCCCcceeeeeeeEEeechhHHHHHhcCCC-C---------
Q 048771 160 SIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAISHGCSGVAARACGLVGLEPTRVAEILKDRP-R--------- 229 (814)
Q Consensus 160 ~lA~~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~~~~~~~~~eAsR~~glV~~~~~~LVe~lmD~~-~--------- 229 (814)
++|++++.+++++++.++..|....+.+++...+.....+.++.+..-|..++|...+.++++.|+|.+ +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~Wd~~~~~~~ 80 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDREQWDKMCVEAE 80 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGGGHHSTTEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhHhhcccchhhhe
Confidence 589999999999999999999886422333332332222223477889999999999999999999988 3
Q ss_pred ------CCc-eee--e----ccccccCceeeEEEeecccCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCcceEEee
Q 048771 230 ------GSA-ILY--A----LTTLAPARDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRP 296 (814)
Q Consensus 230 ------~G~-~M~--a----~SpLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~ 296 (814)
.++ ..| . ++|+.| |||.++|++++.++|.++|+..|++.....+. ...++|+..++||++|++
T Consensus 81 ~le~~~~~~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~---~~~~VR~~~~~s~~~i~~ 156 (206)
T PF01852_consen 81 VLEQIDEDTDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPN---SKGYVRAEILISGWVIRP 156 (206)
T ss_dssp EEEEEETTEEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT----TTSEEEEEESEEEEEEE
T ss_pred eeeecCCCCeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeecccccccc---ccCcceeeeeeEeEEEEE
Confidence 333 222 1 558888 99999999999999999999999986433221 457899999999999999
Q ss_pred CCCCceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHHH
Q 048771 297 CEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALR 341 (814)
Q Consensus 297 ~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~Lr 341 (814)
.++|.|+||+|-|+|..-+...-+++.++.+...-..+.+.+.|+
T Consensus 157 ~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~ 201 (206)
T PF01852_consen 157 LGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALK 201 (206)
T ss_dssp ETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999988899999999998888888888885
No 6
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.49 E-value=1.6e-14 Score=142.85 Aligned_cols=64 Identities=30% Similarity=0.480 Sum_probs=60.1
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHHHH
Q 048771 13 LDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 80 (814)
Q Consensus 13 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe~~ 80 (814)
+.||.||.||++|+..||..|+.|+|....+|++||+.| +|++.||||||||||+|.||.+.+.
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L----~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSL----SLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHc----CCChhHhhhhhhhhhHHHHHHHHHh
Confidence 567889999999999999999999999999999999999 9999999999999999999966553
No 7
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.49 E-value=1.4e-14 Score=157.38 Aligned_cols=65 Identities=23% Similarity=0.337 Sum_probs=60.3
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHHH
Q 048771 11 GSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 79 (814)
Q Consensus 11 ~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe~ 79 (814)
.+|.++.|+.||..|+..||+.|++.+|.+..+|.+||+.| ||+..|||+||||||+|||+..++
T Consensus 169 pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~L----gLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 169 PKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASL----GLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred CcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHc----CCchhhHHHHHhhhhHHHHHHHHh
Confidence 45667779999999999999999999999999999999999 999999999999999999996554
No 8
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.48 E-value=2.6e-14 Score=153.62 Aligned_cols=69 Identities=29% Similarity=0.504 Sum_probs=61.7
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHHHHHHH
Q 048771 11 GSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQ 83 (814)
Q Consensus 11 ~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe~~~l~ 83 (814)
..++||+|.-||..|+.+||+.|+.++|++..+|++||..| +|++.||||||||||-|.||++....++
T Consensus 150 ~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~L----rLT~TQVKIWFQNrRYK~KR~~~dk~~~ 218 (307)
T KOG0842|consen 150 KRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSL----RLTPTQVKIWFQNRRYKTKRQQKDKALE 218 (307)
T ss_pred cccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhc----CCCchheeeeeecchhhhhhhhhhhhhh
Confidence 34566778889999999999999999999999999999999 9999999999999999999966654444
No 9
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.48 E-value=1.2e-14 Score=154.93 Aligned_cols=62 Identities=29% Similarity=0.455 Sum_probs=58.7
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 12 SLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 12 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
++.||.|+.||..|+.+||+.|+.++|.+..+|.|||..| +|+++||||||||||+||||.+
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L----~LtErQIKIWFQNRRMK~Kk~~ 218 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHAL----NLTERQIKIWFQNRRMKWKKEN 218 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhc----chhHHHHHHHHHHHHHHHHHhh
Confidence 4568999999999999999999999999999999999999 9999999999999999999844
No 10
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.46 E-value=2.9e-14 Score=153.29 Aligned_cols=68 Identities=32% Similarity=0.468 Sum_probs=61.6
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHHHHHHH
Q 048771 12 SLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQ 83 (814)
Q Consensus 12 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe~~~l~ 83 (814)
+..+|||.-+|..|+.+||+.|..|.|.+..+|.+|++.| +|++|||||||||||.|+||...+.+++
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~l----NLTeRQVKIWFQNRRMK~KK~~re~r~~ 300 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTL----NLTERQVKIWFQNRRMKEKKVNRENRLK 300 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhc----ccchhheeeeehhhhhHHhhhhhhhhcc
Confidence 5567889999999999999999999999999999999999 9999999999999999999965544443
No 11
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.40 E-value=2.3e-13 Score=137.06 Aligned_cols=63 Identities=29% Similarity=0.449 Sum_probs=58.8
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 11 GSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 11 ~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
++.+++.|+.||.+|+..||+-|++.+|.+..+|.+++..| .|++.||||||||||+|.||-|
T Consensus 141 hk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL----~LTeTqVKIWFQNRRAKaKRlQ 203 (246)
T KOG0492|consen 141 HKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSL----ELTETQVKIWFQNRRAKAKRLQ 203 (246)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhh----hhhhhheehhhhhhhHHHHHHH
Confidence 45567889999999999999999999999999999999999 9999999999999999999844
No 12
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.38 E-value=2.6e-13 Score=138.91 Aligned_cols=65 Identities=26% Similarity=0.407 Sum_probs=60.4
Q ss_pred CCCCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhH
Q 048771 8 GKTGSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 76 (814)
Q Consensus 8 ~~~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krr 76 (814)
.++++|-++.||.|+.-|++.|.+.|+++.|.-..+|.+||..| ||+..||||||||||.|.||.
T Consensus 116 Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsL----GLTQTQVKIWFQNrRSK~KKl 180 (245)
T KOG0850|consen 116 NGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASL----GLTQTQVKIWFQNRRSKFKKL 180 (245)
T ss_pred CCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHh----CCchhHhhhhhhhhHHHHHHH
Confidence 34566677889999999999999999999999999999999999 999999999999999999983
No 13
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.38 E-value=1.2e-13 Score=143.39 Aligned_cols=58 Identities=31% Similarity=0.525 Sum_probs=54.3
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 16 GKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 16 rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
+-|..||..|+.+||+.|...+|..+.+|.|||..| +|++|||||||||||+|+||.+
T Consensus 201 KYRvVYTDhQRLELEKEfh~SryITirRKSELA~~L----gLsERQVKIWFQNRRAKERK~n 258 (317)
T KOG0848|consen 201 KYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATL----GLSERQVKIWFQNRRAKERKDN 258 (317)
T ss_pred ceeEEecchhhhhhhhhhccccceeeehhHHHHHhh----CccHhhhhHhhhhhhHHHHHHH
Confidence 346789999999999999999999999999999999 9999999999999999999843
No 14
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.37 E-value=1.6e-13 Score=124.64 Aligned_cols=60 Identities=25% Similarity=0.529 Sum_probs=56.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhH
Q 048771 13 LDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 76 (814)
Q Consensus 13 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krr 76 (814)
+.+|-|+.||..|+.+||+.|.+.+||+.-.|++||.++ .|++..|+|||||||+|.||+
T Consensus 16 KQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~ki----dLTEARVQVWFQNRRAKfRKQ 75 (125)
T KOG0484|consen 16 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKI----DLTEARVQVWFQNRRAKFRKQ 75 (125)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhh----hhhHHHHHHHHHhhHHHHHHH
Confidence 456778999999999999999999999999999999999 999999999999999999983
No 15
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.36 E-value=2.9e-13 Score=111.29 Aligned_cols=57 Identities=42% Similarity=0.735 Sum_probs=55.0
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 15 NGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 15 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
+++|++||.+|+..||..|..++||+..++..||.++ ||++.||++||||||.++|+
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l----~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKEL----GLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHH----TSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccc----cccccccccCHHHhHHHhCc
Confidence 4788999999999999999999999999999999999 99999999999999999986
No 16
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.35 E-value=4.1e-13 Score=136.01 Aligned_cols=62 Identities=27% Similarity=0.362 Sum_probs=57.9
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhH
Q 048771 11 GSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 76 (814)
Q Consensus 11 ~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krr 76 (814)
++.+||.|+.|+..|+-.||..|+...|.+..+|..||++| .|++.|||+||||||.|||++
T Consensus 101 ~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sL----qLTETQVKIWFQNRRnKwKRq 162 (268)
T KOG0485|consen 101 DDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASL----QLTETQVKIWFQNRRNKWKRQ 162 (268)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhh----hhhhhhhhhhhhhhhHHHHHH
Confidence 33566778999999999999999999999999999999999 999999999999999999984
No 17
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.32 E-value=6.9e-13 Score=137.24 Aligned_cols=63 Identities=30% Similarity=0.517 Sum_probs=59.2
Q ss_pred CCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhH
Q 048771 10 TGSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 76 (814)
Q Consensus 10 ~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krr 76 (814)
..+..||.|+.||.+|++.|+..|+++.|....+|++||.+| +|.+.|||+||||+|+|.||-
T Consensus 242 ~~~eeKRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~EL----gLNEsQIKIWFQNKRAKiKKs 304 (342)
T KOG0493|consen 242 SSKEEKRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQEL----GLNESQIKIWFQNKRAKIKKS 304 (342)
T ss_pred ccchhcCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh----CcCHHHhhHHhhhhhhhhhhc
Confidence 345668899999999999999999999999999999999999 999999999999999999983
No 18
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.31 E-value=1.2e-12 Score=135.45 Aligned_cols=58 Identities=29% Similarity=0.547 Sum_probs=54.9
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHHH
Q 048771 18 YVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 79 (814)
Q Consensus 18 r~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe~ 79 (814)
|+.||..|+++||+.|++.+||+...|+-||.++ .|++..|+|||||||+||||++..
T Consensus 145 RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~kt----elpEDRIqVWfQNRRAKWRk~Ek~ 202 (332)
T KOG0494|consen 145 RTIFTSYQLEELEKAFKEAHYPDVYAREMLADKT----ELPEDRIQVWFQNRRAKWRKTEKR 202 (332)
T ss_pred cchhhHHHHHHHHHHHhhccCccHHHHHHHhhhc----cCchhhhhHHhhhhhHHhhhhhhh
Confidence 7889999999999999999999999999999999 999999999999999999985543
No 19
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.28 E-value=2.4e-12 Score=131.42 Aligned_cols=65 Identities=25% Similarity=0.512 Sum_probs=60.8
Q ss_pred CCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHH
Q 048771 10 TGSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 78 (814)
Q Consensus 10 ~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe 78 (814)
..++.+|.||+||..|+++||..|.+..||+...|++||.+| +|++.+|+|||.|||+|+|+++.
T Consensus 33 ~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlkl----nLpeSrVqVWFKNRRAK~r~qq~ 97 (228)
T KOG2251|consen 33 GPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKL----NLPESRVQVWFKNRRAKCRRQQQ 97 (228)
T ss_pred cchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHh----CCchhhhhhhhccccchhhHhhh
Confidence 456778999999999999999999999999999999999999 99999999999999999998543
No 20
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.19 E-value=1.7e-11 Score=121.28 Aligned_cols=65 Identities=40% Similarity=0.609 Sum_probs=60.3
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 9 KTGSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 9 ~~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.+.+..+++|+|.|.+|+..|++.|+.||||+...|.+|+..| +|+++-|++||||||++.|+..
T Consensus 46 ~~s~~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~l----nm~~ksVqIWFQNkR~~~k~~~ 110 (156)
T COG5576 46 DGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLL----NMPPKSVQIWFQNKRAKEKKKR 110 (156)
T ss_pred cCCCcCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhc----CCChhhhhhhhchHHHHHHHhc
Confidence 3455778899999999999999999999999999999999999 9999999999999999999844
No 21
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.17 E-value=1.4e-11 Score=100.50 Aligned_cols=55 Identities=42% Similarity=0.732 Sum_probs=51.9
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHH
Q 048771 16 GKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 74 (814)
Q Consensus 16 rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~K 74 (814)
+.|++++.+|+..||..|..++||+..++.+||.++ ||+.+||+.||+|||++.|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~----~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKL----GLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH----CcCHHHHHHhHHHHhhccC
Confidence 556789999999999999999999999999999999 9999999999999998864
No 22
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.16 E-value=2.1e-11 Score=100.02 Aligned_cols=56 Identities=43% Similarity=0.791 Sum_probs=53.6
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 16 GKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 16 rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
+++..++.+|+..||..|..++||+..++.+||.++ ||+++||+.||+|||.+.|+
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~----~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKEL----GLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHhc
Confidence 567899999999999999999999999999999999 99999999999999999886
No 23
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.11 E-value=8.3e-11 Score=98.11 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=50.2
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCC----CCHHHHHHHHHhcCcccCCCccceeeccccch
Q 048771 15 NGKYVRYTPEQVEALERLYHECPK----PSSIRRQQLIRECPILSNIEPKQIKVWFQNRR 70 (814)
Q Consensus 15 ~rkr~r~T~~Ql~~LE~~F~~~~~----Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRR 70 (814)
+|.|+.||++|++.||.+|..++| |+...|.+||.++ ||++++|||||||-+
T Consensus 2 kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~l----gl~~~vvKVWfqN~k 57 (58)
T TIGR01565 2 KRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEI----GVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHh----CCCHHHeeeecccCC
Confidence 688999999999999999999999 9999999999999 999999999999964
No 24
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.07 E-value=4e-11 Score=121.74 Aligned_cols=64 Identities=31% Similarity=0.487 Sum_probs=58.3
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHHH
Q 048771 12 SLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 79 (814)
Q Consensus 12 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe~ 79 (814)
++++..|..|+..|+..||..|.+.+|+-...|.+||..+ |+.+.||||||||||+|||||...
T Consensus 165 G~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~l----gmteSqvkVWFQNRRTKWRKkhAa 228 (288)
T KOG0847|consen 165 GQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQEL----NMTESQVKVWFQNRRTKWRKKHAA 228 (288)
T ss_pred ccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccc----cccHHHHHHHHhcchhhhhhhhcc
Confidence 4455567789999999999999999999999999999999 999999999999999999997654
No 25
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.07 E-value=8.6e-11 Score=125.05 Aligned_cols=64 Identities=22% Similarity=0.477 Sum_probs=59.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHHHH
Q 048771 13 LDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 80 (814)
Q Consensus 13 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe~~ 80 (814)
+++|.|+.||.+|+++||..|+++.||+...|++||-.. +|++..|+|||.|||+||||++.+.
T Consensus 111 KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwt----NlTE~rvrvwfknrrakwrkrErN~ 174 (351)
T KOG0486|consen 111 KQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKRERNQ 174 (351)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhc----cccchhhhhhcccchhhhhhhhhhH
Confidence 456778899999999999999999999999999999999 9999999999999999999976553
No 26
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.05 E-value=5.7e-11 Score=125.45 Aligned_cols=58 Identities=34% Similarity=0.499 Sum_probs=55.0
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhH
Q 048771 15 NGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 76 (814)
Q Consensus 15 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krr 76 (814)
+|-|+.||.+||..||+.|-+..|.+..+|.+||..| ||++..|||||||||+|+||+
T Consensus 182 RRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaL----NLPEtTIKVWFQNRRMKDKRQ 239 (408)
T KOG0844|consen 182 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAAL----NLPETTIKVWFQNRRMKDKRQ 239 (408)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhh----CCCcceeehhhhhchhhhhhh
Confidence 4567899999999999999999999999999999999 999999999999999999983
No 27
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.04 E-value=3.2e-11 Score=117.94 Aligned_cols=62 Identities=26% Similarity=0.452 Sum_probs=57.3
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHHH
Q 048771 14 DNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 79 (814)
Q Consensus 14 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe~ 79 (814)
+++-|+.|+..|+..||+.|+..+|.+..+|.+||..| +|+++|||.||||||+|.||.+++
T Consensus 100 r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L----~LS~~QVKTWFQNrRMK~Kk~~r~ 161 (194)
T KOG0491|consen 100 RRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANAL----SLSETQVKTWFQNRRMKHKKQQRN 161 (194)
T ss_pred hhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHhc
Confidence 34568899999999999999999999999999999999 999999999999999999986554
No 28
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.02 E-value=1.8e-10 Score=126.68 Aligned_cols=60 Identities=28% Similarity=0.447 Sum_probs=57.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhH
Q 048771 13 LDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 76 (814)
Q Consensus 13 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krr 76 (814)
++||||+.++...+..||++|.+|++|+..++.+||.+| +|++..|+|||+|||.|+||.
T Consensus 293 RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L----~leKEVVRVWFCNRRQkeKR~ 352 (398)
T KOG3802|consen 293 RKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESL----QLEKEVVRVWFCNRRQKEKRI 352 (398)
T ss_pred cccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----ccccceEEEEeeccccccccC
Confidence 567889999999999999999999999999999999999 999999999999999999983
No 29
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.01 E-value=2.2e-10 Score=120.31 Aligned_cols=61 Identities=34% Similarity=0.632 Sum_probs=58.1
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 11 GSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 11 ~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
....||.|+.+|..|++.|+..|+..|+|-...|++|+.+. ||.-|.|+|||||||+|+|+
T Consensus 164 d~~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseT----GLDMRVVQVWFQNRRAKEKR 224 (383)
T KOG4577|consen 164 DASNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSET----GLDMRVVQVWFQNRRAKEKR 224 (383)
T ss_pred ccccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhcc----CcceeehhhhhhhhhHHHHh
Confidence 34568999999999999999999999999999999999999 99999999999999999998
No 30
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=98.94 E-value=2.4e-08 Score=99.00 Aligned_cols=164 Identities=25% Similarity=0.363 Sum_probs=119.2
Q ss_pred HHHHHHHHHhcCCCcceeeCCCCCCCCCccceeecc-CCCcceeeeeeeEEeechhHHHHHhcCCCC-------------
Q 048771 164 ETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAIS-HGCSGVAARACGLVGLEPTRVAEILKDRPR------------- 229 (814)
Q Consensus 164 ~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~~~~-~~~~~eAsR~~glV~~~~~~LVe~lmD~~~------------- 229 (814)
++..+++.+...+ ..|-..... .|-. ++-.. .+.....-|..+.|..++.++.++|+|.+.
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~-~~v~---vy~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~v 76 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEK-DGVK---IYTKPYEDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEV 76 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEEC-CcEE---EEEecCCCCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEE
Confidence 4667788887766 679775321 1211 12111 122347889999999999999999999654
Q ss_pred ----CC-c-e----eeeccccccCceeeEEEeecccCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCcceEEeeCCC
Q 048771 230 ----GS-A-I----LYALTTLAPARDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRPCEG 299 (814)
Q Consensus 230 ----~G-~-~----M~a~SpLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~n 299 (814)
++ . + +.+|.| +++|||.++|++.+.++|.++|+-.|+|.. ..|....++|++.+++|++|+++++
T Consensus 77 l~~~~~~~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~----~~p~~~~~vR~~~~~~~~~i~~~~~ 151 (193)
T cd00177 77 IEEIDEHTDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHD----SHPKEKGYVRAEIKLSGWIIEPLDP 151 (193)
T ss_pred EEEeCCCeEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCC----CCCCCCCcEEEEEEccEEEEEECCC
Confidence 22 2 2 233777 999999999999999999999999999863 2233347899999999999999999
Q ss_pred CceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHHH
Q 048771 300 GGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALR 341 (814)
Q Consensus 300 G~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~Lr 341 (814)
|.|+||++-|+|..-+ +| ..++++.+.-+...++..++
T Consensus 152 ~~~~vt~~~~~D~~g~-iP---~~~~~~~~~~~~~~~~~~~~ 189 (193)
T cd00177 152 GKTKVTYVLQVDPKGS-IP---KSLVNSAAKKQLASFLKDLR 189 (193)
T ss_pred CCEEEEEEEeeCCCCC-cc---HHHHHhhhhhccHHHHHHHH
Confidence 9999999999998865 33 35665555555555555554
No 31
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.92 E-value=6.8e-08 Score=99.47 Aligned_cols=175 Identities=22% Similarity=0.323 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeeccCCCcceeeeeeeEEeechhHHHHH-hcCCCC-------
Q 048771 158 LLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAISHGCSGVAARACGLVGLEPTRVAEI-LKDRPR------- 229 (814)
Q Consensus 158 l~~lA~~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~~~~~~~~~eAsR~~glV~~~~~~LVe~-lmD~~~------- 229 (814)
-..++++|++|++.+.. ++-|-.....+.|--.+.. .. .+ .+-.-|+.++|...+..+.+. ++|.+.
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~~~i~i~~r-~~-~~-~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~ 80 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTTWGDVVYSR-NV-PG-VGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNPT 80 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecCCCCEEEEE-Ec-CC-CceEEEEEEEEcCCHHHHHHHHHcCccccceecCc
Confidence 35788999999999954 5589764321112111111 11 12 335689999999999999764 556554
Q ss_pred ----------CCc--eeee---cc--ccccCceeeEEEeecccCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCcce
Q 048771 230 ----------GSA--ILYA---LT--TLAPARDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGY 292 (814)
Q Consensus 230 ----------~G~--~M~a---~S--pLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGc 292 (814)
+++ ..|. +. ++|..|||.++|+.++.+ |.++|+..|++. +..|+...++|+..+++|+
T Consensus 81 ~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h----~~~P~~~g~VR~~~~~~~~ 155 (208)
T cd08868 81 VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEH----PAMPPTKNYVRGENGPGCW 155 (208)
T ss_pred ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccC----CCCCCCCCeEEEeccccEE
Confidence 222 3343 32 589999999999999866 779999999863 2345556899999999999
Q ss_pred EEeeCCC--CceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHHH-HHHhh
Q 048771 293 LIRPCEG--GGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALR-QLRQM 346 (814)
Q Consensus 293 lIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~Lr-~~e~l 346 (814)
+|+++++ +.|+|||+-|+|..-+ +|. -++++.+.-+.-.++..|| +|+.|
T Consensus 156 ~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 156 ILRPLPNNPNKCNFTWLLNTDLKGW-LPQ---YLVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred EEEECCCCCCceEEEEEEEECCCCC-Ccc---eeeehhhHHHHHHHHHHHHHHHhhC
Confidence 9999987 6899999999998744 554 3577777778888999996 77653
No 32
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.91 E-value=3.3e-08 Score=102.27 Aligned_cols=150 Identities=21% Similarity=0.286 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeec-cCCCcceeeeeeeEEeechhHHHHHhcCCCC--------
Q 048771 159 LSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAI-SHGCSGVAARACGLVGLEPTRVAEILKDRPR-------- 229 (814)
Q Consensus 159 ~~lA~~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~~~-~~~~~~eAsR~~glV~~~~~~LVe~lmD~~~-------- 229 (814)
..++++|++|++++-. ..-.|-.- |.+.+ +.+... .+.+.+---|..|+|..++.+|+|.+-|.+.
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~gWk~~---k~~~~-~~v~~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~ 78 (204)
T cd08904 4 KKIAQETSQEVLGYSR-DTSGWKVV---KTSKK-ITVSWKPSRKYHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSL 78 (204)
T ss_pred HHHHHHHHHHHHhhhh-cccCCeEE---ecCCc-eEEEEEEcCCCCceEEEEEEEecCCHHHHHHHHhccchhhhhcccc
Confidence 5789999999999976 55788663 22321 222222 2344556789999999999999999988765
Q ss_pred ---------CC-c-eeee-----ccccccCceeeEEEeecccCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCcceE
Q 048771 230 ---------GS-A-ILYA-----LTTLAPARDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYL 293 (814)
Q Consensus 230 ---------~G-~-~M~a-----~SpLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGcl 293 (814)
++ | .+|. +-++|-+|||..+||.++.++|.++|+..|++. +..|+...++|++..|+||+
T Consensus 79 ~~~~iie~Id~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~H----p~~Pp~~g~VRa~n~~~G~~ 154 (204)
T cd08904 79 QVYKMLQRIDSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEY----PQCPPSSNYIRGYNHPCGYV 154 (204)
T ss_pred cceeeEEEeCCCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEeccc----CCCCCCCCcEEEeeeccEEE
Confidence 11 2 3453 346899999999999999999999999999863 44666778999999999999
Q ss_pred EeeCCCC--ceEEEEEEeeeccCCCcC
Q 048771 294 IRPCEGG--GSIIHIVDHMDLEPWSVP 318 (814)
Q Consensus 294 Iq~~~nG--~skVtwVeH~e~d~~~v~ 318 (814)
|+|.+++ +|++||+-++|+.-+ +|
T Consensus 155 i~pl~~~p~~t~l~~~~~~DlkG~-lP 180 (204)
T cd08904 155 CSPLPENPAYSKLVMFVQPELRGN-LS 180 (204)
T ss_pred EEECCCCCCceEEEEEEEeCCCCC-CC
Confidence 9999874 899999999877633 44
No 33
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.78 E-value=3.1e-07 Score=94.47 Aligned_cols=171 Identities=23% Similarity=0.273 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeecc-CCCcceeeeeeeEEeechhHHHHHhcC--CCC-----
Q 048771 158 LLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAIS-HGCSGVAARACGLVGLEPTRVAEILKD--RPR----- 229 (814)
Q Consensus 158 l~~lA~~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~~~~-~~~~~eAsR~~glV~~~~~~LVe~lmD--~~~----- 229 (814)
+-.++++|.+|++.... .+..|-.... +.| +.+.... ..+.+-.-|..|.+...+.++++.|+| ...
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~W~~~~~-~~~---i~v~~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd 77 (206)
T cd08867 3 FKVIAEKLANEALQYIN-DTDGWKVLKT-VKN---ITVSWKPSTEFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWD 77 (206)
T ss_pred HHHHHHHHHHHHHHHhc-CcCCcEEEEc-CCC---cEEEEecCCCCCCEEEEEEEEEcCCHHHHHHHHHhcCcccccccc
Confidence 35789999999999976 4478977532 122 2222111 122223469999999999999999999 332
Q ss_pred ------------C-Cc-eeee--c---cccccCceeeEEEeecccCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCc
Q 048771 230 ------------G-SA-ILYA--L---TTLAPARDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPS 290 (814)
Q Consensus 230 ------------~-G~-~M~a--~---SpLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPS 290 (814)
+ .+ .+|. | .++|.+|||..+||.++.++|.++|+-.|++.- ..|+...++|+...++
T Consensus 78 ~~~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp----~~p~~~~~VR~~~~~~ 153 (206)
T cd08867 78 KSLKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIP----ERPPTPGFVRGYNHPC 153 (206)
T ss_pred ccccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCC----CCCCCCCcEEEEeecC
Confidence 1 22 3444 3 347999999999999999999999999998742 3455668999999999
Q ss_pred ceEEeeCC--CCceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHHH
Q 048771 291 GYLIRPCE--GGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALR 341 (814)
Q Consensus 291 GclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~Lr 341 (814)
|++|++.+ ++.|+|||+-|+|..- .+| +-++++.++=+.--|+..||
T Consensus 154 g~~i~p~~~~~~~t~~~~~~~~DpkG-~iP---~~lvn~~~~~~~~~~~~~lr 202 (206)
T cd08867 154 GYFCSPLKGSPDKSFLVLYVQTDLRG-MIP---QSLVESAMPSNLVNFYTDLV 202 (206)
T ss_pred EEEEEECCCCCCceEEEEEEEeccCC-CCc---HHHHHhhhhhhHHHHHHHHH
Confidence 99999986 5789999999999863 455 35676666666667777775
No 34
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=98.76 E-value=2.9e-07 Score=95.82 Aligned_cols=171 Identities=23% Similarity=0.301 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeec-cCCCcceeeeeeeEE-eechhHHHHHhcCCCC----------
Q 048771 162 AEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAI-SHGCSGVAARACGLV-GLEPTRVAEILKDRPR---------- 229 (814)
Q Consensus 162 A~~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~~~-~~~~~~eAsR~~glV-~~~~~~LVe~lmD~~~---------- 229 (814)
-++.+++|+.++..+ .-|-.... +.| +.++-. ..+...-.-|..+.+ ...+..+.+.|+|.+.
T Consensus 8 ~~~~~~~~~~~~~~~-~~W~~~~~-~~g---i~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e 82 (222)
T cd08871 8 TDADFEEFKKLCDST-DGWKLKYN-KNN---VKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIE 82 (222)
T ss_pred CHHHHHHHHHHhcCC-CCcEEEEc-CCC---eEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhce
Confidence 368899999999654 47976532 122 222211 123333567887875 5788999999999754
Q ss_pred --------CCc-eee----eccccccCceeeEEEeecccCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCcceEEee
Q 048771 230 --------GSA-ILY----ALTTLAPARDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRP 296 (814)
Q Consensus 230 --------~G~-~M~----a~SpLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~ 296 (814)
.++ .+| +|-| |..|||.++|..+..+ |..+|+..|++.. ..|....++|.....+|++|++
T Consensus 83 ~~~ie~~d~~~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~----~~P~~~g~VR~~~~~~g~~i~p 156 (222)
T cd08871 83 SFDICQLNPNNDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKHK----KYPPRKGFVRAISLLTGYLIRP 156 (222)
T ss_pred eEEEEEcCCCCEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccCC----CCCCCCCeEEeEEEccEEEEEE
Confidence 222 223 3666 8999999999998776 8889999998742 3445568899999999999999
Q ss_pred CCCCceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHHH-HHHhhc
Q 048771 297 CEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALR-QLRQMA 347 (814)
Q Consensus 297 ~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~Lr-~~e~la 347 (814)
.+++.|+|||+-|++..-+ +|. -+++....-+.-.++..|| .|+...
T Consensus 157 ~~~~~t~vt~~~~~Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~ 204 (222)
T cd08871 157 TGPKGCTLTYVTQNDPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYP 204 (222)
T ss_pred CCCCCEEEEEEEecCCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999998765 554 4666666667778888886 677654
No 35
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.70 E-value=9.1e-09 Score=106.45 Aligned_cols=62 Identities=24% Similarity=0.416 Sum_probs=57.9
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 12 SLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 12 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.+.++.|+.|+..|+++||+.|+..+||+...|+.||..+ ++++..|++||||||+||++++
T Consensus 58 ~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~----~~~e~rVqvwFqnrrak~r~~~ 119 (235)
T KOG0490|consen 58 FSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLL----TGDEFRVQVWFQNRRAKDRKEE 119 (235)
T ss_pred ccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcC----CCCeeeeehhhhhhcHhhhhhh
Confidence 3567889999999999999999999999999999999999 9999999999999999999844
No 36
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.63 E-value=1.6e-06 Score=89.92 Aligned_cols=173 Identities=21% Similarity=0.248 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeeccCCCcceeeeeeeEEeechhHHHHHhc-CCCC--------
Q 048771 159 LSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAISHGCSGVAARACGLVGLEPTRVAEILK-DRPR-------- 229 (814)
Q Consensus 159 ~~lA~~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~~~~~~~~~eAsR~~glV~~~~~~LVe~lm-D~~~-------- 229 (814)
..++++|++|++++.+ .+..|-.....+.| +.++.......+-+-|.-++|..++.+|++.|. |.+.
T Consensus 7 ~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~g---i~v~s~~~~~~~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~ 82 (209)
T cd08905 7 IKQGEEALQKSLSILQ-DQEGWKTEIVAENG---DKVLSKVVPDIGKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNV 82 (209)
T ss_pred HHHHHHHHHHHHHHhc-cccCCEEEEecCCC---CEEEEEEcCCCCcEEEEEEEecCCHHHHHHHHHhchhhhceecccc
Confidence 5789999999999985 66689764111222 222221111223678899999999999995555 5443
Q ss_pred ---------CC-c-eee---eccc--cccCceeeEEEeecccCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCcceE
Q 048771 230 ---------GS-A-ILY---ALTT--LAPARDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYL 293 (814)
Q Consensus 230 ---------~G-~-~M~---a~Sp--Lvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGcl 293 (814)
+. + .+| +|.| +|..|||-.+|+.++.+++. +++..|.+. +..|+...++|++..++|++
T Consensus 83 ~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~~~----~~~P~~~~~VR~~~~~~~w~ 157 (209)
T cd08905 83 KEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMATHF----GLMPEQKGFIRAENGPTCIV 157 (209)
T ss_pred hHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcE-EEEEEeecC----CCCCCCCCeEEEEeeccEEE
Confidence 11 1 234 3554 79999999999999886554 566677553 33455668999999999999
Q ss_pred EeeCCC--CceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHHH-HHH
Q 048771 294 IRPCEG--GGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALR-QLR 344 (814)
Q Consensus 294 Iq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~Lr-~~e 344 (814)
|+++++ |.|+|+|+-|+|..-+ +|. .|+++.++=+.--++..|| +++
T Consensus 158 l~p~~~~~~~t~v~~~~~~DpkG~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 158 LRPLAGDPSKTKLTWLLSIDLKGW-LPK---SIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred EEECCCCCCceEEEEEEeecCCCC-CCH---HHHHHHhHHhHHHHHHHHHHHHh
Confidence 999988 9999999999997755 664 5777666666777777775 443
No 37
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.56 E-value=3.2e-06 Score=87.63 Aligned_cols=170 Identities=19% Similarity=0.239 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeec-cCCCcceeeeeeeEEeechhHHHHHhcCCCC--------
Q 048771 159 LSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAI-SHGCSGVAARACGLVGLEPTRVAEILKDRPR-------- 229 (814)
Q Consensus 159 ~~lA~~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~~~-~~~~~~eAsR~~glV~~~~~~LVe~lmD~~~-------- 229 (814)
.+++++|+++++.+-+ .+..|-..... .| +.++.. .....+-.-|.-|+|..++.+|++.|+|...
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~~W~~~~~~-~~---i~v~~~~~~~~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~ 78 (208)
T cd08903 4 AELAESVADKMLLYRR-DESGWKTCRRT-NE---VAVSWRPSAEFAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQ 78 (208)
T ss_pred HHHHHHHHHHHHhhhc-cccCCEEEEcC-CC---EEEEeeecCCCCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhh
Confidence 5789999999999874 66789764221 12 222211 0122222379999999999999999997742
Q ss_pred -----------CCc--eeee--ccc---cccCceeeEEEeecccCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCcc
Q 048771 230 -----------GSA--ILYA--LTT---LAPARDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSG 291 (814)
Q Consensus 230 -----------~G~--~M~a--~Sp---Lvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSG 291 (814)
++. ..|. |.| +|.+|||..+|+.++.++|.++|.-.|... +..|+...++|++..|+|
T Consensus 79 ~~~~~~vle~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h----~~~P~~~~~VR~~~~~~g 154 (208)
T cd08903 79 NVKDFEVVEAISDDVSVCRTVTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEH----PLCPPQAGFVRGFNHPCG 154 (208)
T ss_pred ccccEEEEEEecCCEEEEEEecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccC----CCCCCCCCeEEEeeeccE
Confidence 222 2333 544 699999999999999999998877777653 345666789999999999
Q ss_pred eEEeeCCC--CceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHHH
Q 048771 292 YLIRPCEG--GGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALR 341 (814)
Q Consensus 292 clIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~Lr 341 (814)
++|.+.++ +.|+|+|+-|+|.. ..+|. .++++.++=+..-++..||
T Consensus 155 ~~~~~~~~~~~~t~v~~~~~~Dpk-G~iP~---~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 155 CFCEPVPGEPDKTQLVSFFQTDLS-GYLPQ---TVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred EEEEECCCCCCceEEEEEEEeccC-CCcCH---HHHHHHhhHHHHHHHHHHH
Confidence 99999964 58999999888874 35663 5665544444555566664
No 38
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.46 E-value=1.6e-06 Score=102.40 Aligned_cols=109 Identities=28% Similarity=0.428 Sum_probs=91.7
Q ss_pred eeeeeeeEEeechhHHHHHhcCCCC------------------CCc--eeee------ccccccCceeeEEEeecccCCC
Q 048771 205 VAARACGLVGLEPTRVAEILKDRPR------------------GSA--ILYA------LTTLAPARDFWLLRYTSVLEDG 258 (814)
Q Consensus 205 eAsR~~glV~~~~~~LVe~lmD~~~------------------~G~--~M~a------~SpLvp~Re~~fLRyckq~~~G 258 (814)
-+=|+.|+|...+.+|.|.+|+.+. .|. .+|. +...+-+|||+++||-+..+||
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDG 306 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDG 306 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCC
Confidence 5778999999999999999997763 222 4443 3367888999999999999999
Q ss_pred cEEEEEeeccCCCCCCCCCCCCCccceeecCcceEEeeCC--C--CceEEEEEEeeeccCCCc
Q 048771 259 SLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRPCE--G--GGSIIHIVDHMDLEPWSV 317 (814)
Q Consensus 259 ~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~--n--G~skVtwVeH~e~d~~~v 317 (814)
+++|+=+|+.. +.-|+...|+|++..|+||+|.|++ + -.|.|+|+-|+++.-|..
T Consensus 307 sYvil~~Sv~H----p~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 307 SYVVLFRSREH----ENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred cEEEeeeeeec----CCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 99999999874 4455677899999999999999964 3 379999999999999975
No 39
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.42 E-value=1.4e-05 Score=83.14 Aligned_cols=171 Identities=17% Similarity=0.200 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeeccCCCcceeeeeeeEEeechhHHH-HHhcCCCC-------
Q 048771 158 LLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAISHGCSGVAARACGLVGLEPTRVA-EILKDRPR------- 229 (814)
Q Consensus 158 l~~lA~~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~~~~~~~~~eAsR~~glV~~~~~~LV-e~lmD~~~------- 229 (814)
....+++||+++.++... +..|.-....|.| +.++-......+-+=|.-++|...+..|. +.|.|.+.
T Consensus 6 ~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~g---i~V~s~~~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~ 81 (209)
T cd08906 6 YVRQGKEALAVVEQILAQ-EENWKFEKNNDNG---DTVYTLEVPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKT 81 (209)
T ss_pred HHHHHHHHHHHHHHHhhc-ccCCEEEEecCCC---CEEEEeccCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCcc
Confidence 356789999999999764 4579742111223 22221111112244488888999999995 68888886
Q ss_pred ----------CCc--eeee---ccc--cccCceeeEEEeecccCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCcce
Q 048771 230 ----------GSA--ILYA---LTT--LAPARDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGY 292 (814)
Q Consensus 230 ----------~G~--~M~a---~Sp--Lvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGc 292 (814)
+.+ ..|. |.+ .|..|||-.+|+.++.++| ++++..|++.. ..|+...++|.+..++|+
T Consensus 82 ~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~----~~P~~~~~VR~~~~~~G~ 156 (209)
T cd08906 82 VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHS----HKPPLSKYVRGENGPGGF 156 (209)
T ss_pred chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEecC----CCCCCCCeEEEeeeccEE
Confidence 111 3453 333 6899999999999998888 67788888742 355666899999999999
Q ss_pred EEeeC--CCCceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHHH
Q 048771 293 LIRPC--EGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALR 341 (814)
Q Consensus 293 lIq~~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~Lr 341 (814)
+|++. .+|.|+|||+-|+|..- .+|. .+++..++=+.--++..||
T Consensus 157 ~i~~~~~~~~~t~vt~~~~~Dp~G-~lP~---~lvN~~~~~~~~~~~~~LR 203 (209)
T cd08906 157 VVLKSASNPSVCTFIWILNTDLKG-RLPR---YLIHQSLAATMFEFASHLR 203 (209)
T ss_pred EEEECCCCCCceEEEEEEecCCCC-CCCH---HHHHHHHHHHHHHHHHHHH
Confidence 99985 57799999999998764 4654 5776666655556666665
No 40
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.41 E-value=1.5e-07 Score=99.52 Aligned_cols=63 Identities=22% Similarity=0.450 Sum_probs=58.8
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 11 GSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 11 ~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
++.+||||+.+.......||.+|..+|.|+.+....+|.+| .|.+..|+|||+|.|.|.||.+
T Consensus 306 ~~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekL----DLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 306 GGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKL----DLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred ccccccccccccCcccccHHHHhccCCCCchhHHHHHHHhh----hhhhceEEEEeeccHHHHHHhh
Confidence 45678999999999999999999999999999999999999 9999999999999999999844
No 41
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.35 E-value=2.4e-07 Score=103.23 Aligned_cols=60 Identities=30% Similarity=0.631 Sum_probs=56.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhH
Q 048771 13 LDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 76 (814)
Q Consensus 13 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krr 76 (814)
+.+|+|+.|++.|+..||+.|+.++||+...|++||.+. ++++..|.+||+|||+|++|.
T Consensus 175 ~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i----~l~e~riqvwf~nrra~~rr~ 234 (354)
T KOG0849|consen 175 GGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKET----GLPEPRVQVWFQNRRAKWRRQ 234 (354)
T ss_pred cccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhc----cCCchHHHHHHhhhhhhhhhc
Confidence 445678999999999999999999999999999999999 999999999999999999983
No 42
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.31 E-value=1.2e-05 Score=82.71 Aligned_cols=146 Identities=27% Similarity=0.412 Sum_probs=107.6
Q ss_pred HHHHHHHHHHhcCCCcceeeCCCCCCCCCcccee--eccCCCcceeeeeeeEEeechhHHHHHhcCCCC-----------
Q 048771 163 EETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIV--AISHGCSGVAARACGLVGLEPTRVAEILKDRPR----------- 229 (814)
Q Consensus 163 ~~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~--~~~~~~~~eAsR~~glV~~~~~~LVe~lmD~~~----------- 229 (814)
+.+.++||+-+...+.-|.-... +.| +.+. ....++...+=|..++|...+.++++.++|...
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~-~~g---i~I~~k~~~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~Wd~~~~~~~v 79 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSS-SDH---VELAFKKVDDGHPLRLWRASTEVEAPPEEVLQRILRERHLWDDDLLQWKV 79 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEec-CCc---EEEEEEeCCCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhccchhhheEEE
Confidence 56788999999977899976532 122 2222 222334556779999999999999998988654
Q ss_pred ----CC-c-eeee----ccccccCceeeEEEeecc-cCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCcceEEeeCC
Q 048771 230 ----GS-A-ILYA----LTTLAPARDFWLLRYTSV-LEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRPCE 298 (814)
Q Consensus 230 ----~G-~-~M~a----~SpLvp~Re~~fLRyckq-~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~ 298 (814)
+. + ..|. |-| +++|||..+|+++. .++|..+|.=.|++... ..|+ .++|++.+++|++|+|.+
T Consensus 80 ie~id~~~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~---~~p~--g~VR~~~~~~g~~i~p~~ 153 (197)
T cd08869 80 VETLDEDTEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTE---PVPL--GGVRAVVLASRYLIEPCG 153 (197)
T ss_pred EEEecCCcEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCC---CCCC--CCEEEEEEeeeEEEEECC
Confidence 22 2 2332 445 69999999999874 78889999999986321 1222 789999999999999999
Q ss_pred CCceEEEEEEeeeccCCCcCc
Q 048771 299 GGGSIIHIVDHMDLEPWSVPE 319 (814)
Q Consensus 299 nG~skVtwVeH~e~d~~~v~~ 319 (814)
+|.|+||++-|+|.- ..+|.
T Consensus 154 ~~~t~vty~~~~Dp~-G~iP~ 173 (197)
T cd08869 154 SGKSRVTHICRVDLR-GRSPE 173 (197)
T ss_pred CCCeEEEEEEEECCC-CCCCc
Confidence 999999999999874 34564
No 43
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.23 E-value=1.8e-05 Score=82.23 Aligned_cols=108 Identities=28% Similarity=0.372 Sum_probs=81.6
Q ss_pred eeeeeeeEEeechhHHHHHhcCCCC---------------CC-c-----eeeeccccccCceeeEEEeecc-cCCCcEEE
Q 048771 205 VAARACGLVGLEPTRVAEILKDRPR---------------GS-A-----ILYALTTLAPARDFWLLRYTSV-LEDGSLVV 262 (814)
Q Consensus 205 eAsR~~glV~~~~~~LVe~lmD~~~---------------~G-~-----~M~a~SpLvp~Re~~fLRyckq-~~~G~waV 262 (814)
-.-|....|.-.+..++..+++... ++ + .+..|-|+ |.|||+.+|+-++ +++|..+|
T Consensus 52 k~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~~~P~-~~RD~v~~R~w~~~~~~G~~vi 130 (205)
T cd08909 52 RLWKVSVEVEAPPSVVLNRVLRERHLWDEDFLQWKVVETLDKQTEVYQYVLNCMAPH-PSRDFVVLRSWRTDLPKGACSL 130 (205)
T ss_pred EEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcceeEEEEEeCCCcEEEEEEeecCCCC-CCCEEEEEEEEEEeCCCCcEEE
Confidence 5677777777778887666655222 33 3 12225564 9999999999764 57999999
Q ss_pred EEeeccCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCcCc
Q 048771 263 CERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE 319 (814)
Q Consensus 263 vDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~ 319 (814)
+..|++... .|+ ..++|+..+-+|++|+|+++|.|+||++-|+|..-+ +|.
T Consensus 131 ~~~Sv~H~~----~p~-~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~-~P~ 181 (205)
T cd08909 131 VSVSVEHEE----APL-LGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH-SPE 181 (205)
T ss_pred EEecCCCCc----CCC-CCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC-ChH
Confidence 999999643 223 378999999999999999999999999999987533 454
No 44
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.11 E-value=7.6e-05 Score=77.03 Aligned_cols=157 Identities=22% Similarity=0.329 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCc-cceeeccCCCcceeeeeeeEEeechhHHHHHhcCCCC--------
Q 048771 159 LSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDS-VGIVAISHGCSGVAARACGLVGLEPTRVAEILKDRPR-------- 229 (814)
Q Consensus 159 ~~lA~~Am~Ell~la~~~eplWi~~~g~k~g~d~-~~~~~~~~~~~~eAsR~~glV~~~~~~LVe~lmD~~~-------- 229 (814)
..+|.+.-+++++--+.++-.|-.-.. +.+. +-..| +.-+.|---|.-|+|.-.+..|++.+-+.+.
T Consensus 4 ~~~~~~~~~~~~~y~~~~~~~Wkl~k~---~~~~~v~~k~-~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v 79 (202)
T cd08902 4 ASKTTKLQNTLIQYHSILEEEWRVAKK---SKDVTVWRKP-SEEFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLM 79 (202)
T ss_pred HHHHHHHHHHHHHhccccccCcEEEEe---CCCEEEEEec-CCcCCCceEEEEEEecCCHHHHHHHHhcccchhcccchh
Confidence 567777778888876668999966321 1111 11111 1234455678889999999999999988552
Q ss_pred ----------CCc-ee-ee----ccccccCceeeEEEeecccCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCcceE
Q 048771 230 ----------GSA-IL-YA----LTTLAPARDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYL 293 (814)
Q Consensus 230 ----------~G~-~M-~a----~SpLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGcl 293 (814)
..| .+ |+ +-++|-+|||.-+||+++.++|. ..|=||++.- .+|+ .++|++..|+||+
T Consensus 80 ~~~~Iie~Id~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~----~~pp--g~VRgen~p~g~i 152 (202)
T cd08902 80 TSMDIIEEFEENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYE----EARP--NFVRGFNHPCGWF 152 (202)
T ss_pred hheeHhhhhcCCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCC----CCCC--CeEeecccccEEE
Confidence 222 33 44 67799999999999999999998 7777887742 2233 8999999999999
Q ss_pred EeeCCCC--ceEEEEEEeeeccCCCcCccchhhhchhHH
Q 048771 294 IRPCEGG--GSIIHIVDHMDLEPWSVPEVLRPLYESSTV 330 (814)
Q Consensus 294 Iq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~Sg~a 330 (814)
+.|.+|| .|+.||+-++|+.-+ +| +-++++.++
T Consensus 153 ~~Pl~~~p~k~~~t~~lq~DLkG~-LP---qsiIdq~~~ 187 (202)
T cd08902 153 CVPLKDNPSHSLLTGYIQTDLRGM-LP---QSAVDTAMA 187 (202)
T ss_pred EEECCCCCCceEEEEEEEecCCCC-cc---HHHHHHHhh
Confidence 9999998 677889999887744 44 345544433
No 45
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.04 E-value=3.1e-06 Score=89.51 Aligned_cols=51 Identities=25% Similarity=0.546 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 21 YTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 21 ~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
|-..-+..|..+|..++||++.++.+||+.. ||+..||-.||+|||.|+|.
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aT----gLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEAT----GLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHh----CCchhhhhhhhhhhhhhhhh
Confidence 4455677999999999999999999999999 99999999999999999983
No 46
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=97.87 E-value=9.9e-05 Score=64.57 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=83.4
Q ss_pred CCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCcEEE
Q 048771 707 TDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPVSY 786 (814)
Q Consensus 707 p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i 786 (814)
|++|+.++. |=.++|+|.+++++|+++-+++.+.+...-..+..+.+..+.+.++.++|-...+.-.-..+.|+.+++
T Consensus 1 p~~i~i~d~--~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~ 78 (104)
T PF13426_consen 1 PDGIFILDP--DGRILYVNPAFERLFGYSREELIGKSISDFFPEEDRPEFEEQIERALEEGGSWSGEVRLRRKDGETFWV 78 (104)
T ss_dssp -SEEEEEET--TSBEEEE-HHHHHHHTS-HHHHTTSBGGGGCSTTSCHHHHHHHHHHHHHTSSEEEEEEEEETTSEEEEE
T ss_pred CEEEEEECC--cCcEEehhHHHHHHHCcCHHHHcCCCcccccCcccchhhHHHHHHHHhcCCceeEEEEEEcCCCCEEEE
Confidence 677777777 578999999999999999999999999888877777777788888888777677777777899999888
Q ss_pred ceeEEeEeecCCCceEEEEEeccC
Q 048771 787 ERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 787 ~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
...+-.+.|++|+..|..++|.|
T Consensus 79 -~~~~~~i~~~~g~~~~~i~~~~D 101 (104)
T PF13426_consen 79 -EVSASPIRDEDGEITGIIGIFRD 101 (104)
T ss_dssp -EEEEEEEEETTSSEEEEEEEEEE
T ss_pred -EEEEEEEECCCCCEEEEEEEEEE
Confidence 66888999999999998888765
No 47
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=97.73 E-value=0.00038 Score=72.36 Aligned_cols=147 Identities=24% Similarity=0.337 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeec--cCCCcceeeeeeeEEeechhHHHHHhcCCCC---------
Q 048771 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAI--SHGCSGVAARACGLVGLEPTRVAEILKDRPR--------- 229 (814)
Q Consensus 161 lA~~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~~~--~~~~~~eAsR~~glV~~~~~~LVe~lmD~~~--------- 229 (814)
.-++.+++|++.|..--=-|+... .++...+..+ +.+..--.-|....+.-.+.+++..|+|...
T Consensus 10 ~~~~~~~~l~~e~~~k~k~w~~~~----~~~~~el~~~k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~Wd~~~~e~ 85 (204)
T cd08908 10 FLQDCVDGLFKEVKEKFKGWVSYS----TSEQAELSYKKVSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHLWDVDLLDS 85 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccC----CCCcEEEEEeccCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHHHHHHhhhe
Confidence 345677777777764444565532 1222222111 1223335668888888889999988888743
Q ss_pred ------CCc--ee----eeccccccCceeeEEEeec-ccCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCcceEEee
Q 048771 230 ------GSA--IL----YALTTLAPARDFWLLRYTS-VLEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRP 296 (814)
Q Consensus 230 ------~G~--~M----~a~SpLvp~Re~~fLRyck-q~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~ 296 (814)
+.. .. -+|-| +|.|||.++|-.+ +.++|..+|+-.|++... .|. .++|++.+-+|++|+|
T Consensus 86 ~vIe~ld~~~~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~----~P~--~~VR~~~~~~~w~i~P 158 (204)
T cd08908 86 KVIEILDSQTEIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDR----APV--AGVRVNVLLSRYLIEP 158 (204)
T ss_pred EeeEecCCCceEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCccc----CCc--CceEEEEEeeEEEEEE
Confidence 222 22 23777 7999999997765 589999999999988532 232 2689999999999999
Q ss_pred CCCCceEEEEEEeeeccCCCcCc
Q 048771 297 CEGGGSIIHIVDHMDLEPWSVPE 319 (814)
Q Consensus 297 ~~nG~skVtwVeH~e~d~~~v~~ 319 (814)
+++|.|+||.+-|+|-- ..+|.
T Consensus 159 ~g~g~t~vtyi~~~DPg-G~iP~ 180 (204)
T cd08908 159 CGSGKSKLTYMCRIDLR-GHMPE 180 (204)
T ss_pred CCCCcEEEEEEEEeCCC-CCCcH
Confidence 99999999999999754 24554
No 48
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.66 E-value=0.00038 Score=72.41 Aligned_cols=108 Identities=24% Similarity=0.340 Sum_probs=80.6
Q ss_pred eeeeeEEeechhHHHHHhcCCCC-----------------CCc--eeee--cccc-c--cCceeeEEEeecccCCCcEEE
Q 048771 207 ARACGLVGLEPTRVAEILKDRPR-----------------GSA--ILYA--LTTL-A--PARDFWLLRYTSVLEDGSLVV 262 (814)
Q Consensus 207 sR~~glV~~~~~~LVe~lmD~~~-----------------~G~--~M~a--~SpL-v--p~Re~~fLRyckq~~~G~waV 262 (814)
-|.-+.|...+.+|.+.|.|... +.. ..|. ++|+ + +.|||..+|-....+++.. |
T Consensus 47 ~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~v-i 125 (205)
T cd08874 47 FLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELSV-V 125 (205)
T ss_pred EEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcEE-E
Confidence 34456888999999999999987 111 3444 5554 4 8999999995555555544 6
Q ss_pred EEeeccCCCCCCCCCCCC-CccceeecCcceEEeeC---CCCceEEEEEEeeeccCCCcCc
Q 048771 263 CERSLKNIQNGPTMPPVQ-HFVRAEMLPSGYLIRPC---EGGGSIIHIVDHMDLEPWSVPE 319 (814)
Q Consensus 263 vDvSld~~~~~~~~~~~~-~~~r~~rlPSGclIq~~---~nG~skVtwVeH~e~d~~~v~~ 319 (814)
.=.|++. +..|+.. .++|.+.+++|++|+|+ ++|.|+||.+-|+|.--..+|.
T Consensus 126 ~~~SV~~----~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~ 182 (205)
T cd08874 126 ACQSVYD----KSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPA 182 (205)
T ss_pred EEEeccc----ccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCH
Confidence 6677664 3344444 78999999999999999 9999999999999976455664
No 49
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=97.55 E-value=0.00089 Score=69.53 Aligned_cols=134 Identities=15% Similarity=0.196 Sum_probs=100.3
Q ss_pred CcceeeeeeeEEe-echhHHHHHhcCCCC----------------CCc-eee----eccccccCceeeEEEeec-ccCCC
Q 048771 202 CSGVAARACGLVG-LEPTRVAEILKDRPR----------------GSA-ILY----ALTTLAPARDFWLLRYTS-VLEDG 258 (814)
Q Consensus 202 ~~~eAsR~~glV~-~~~~~LVe~lmD~~~----------------~G~-~M~----a~SpLvp~Re~~fLRyck-q~~~G 258 (814)
.....=|+.+.+. ..+..|.++|+|.+. .|+ ..| .|-| +..||+.++|-.. ...+|
T Consensus 46 s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~~~~~~~~i~y~~~k~PwP-vs~RD~V~~r~~~~~~~~~ 124 (207)
T cd08910 46 SGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKELYEKECDGETVIYWEVKYPFP-LSNRDYVYIRQRRDLDVEG 124 (207)
T ss_pred CCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHhheeecCCCCEEEEEEEEcCCC-CCCceEEEEEEeccccCCC
Confidence 3345678888888 799999999999775 233 233 3777 9999999996444 33344
Q ss_pred --cEEEEEeeccCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHH
Q 048771 259 --SLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTT 336 (814)
Q Consensus 259 --~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w 336 (814)
.|+|+..|.+. |..|....++|....-+|++|++..++.|+|+++-|.+-. ..+|. -+++.-...+...+
T Consensus 125 ~~~~iv~~~s~~~----p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPg-G~IP~---wlvN~~~~~~~~~~ 196 (207)
T cd08910 125 RKIWVILARSTSL----PQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GMIPS---WLINWAAKNGVPNF 196 (207)
T ss_pred CeEEEEEecCCCC----CCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCC-CcchH---HHHHHHHHHhhHHH
Confidence 68888888763 3345556899999999999999998899999999999853 35664 46666667788888
Q ss_pred HHHHH-HHH
Q 048771 337 MAALR-QLR 344 (814)
Q Consensus 337 ~~~Lr-~~e 344 (814)
+..|| .|.
T Consensus 197 l~~l~ka~~ 205 (207)
T cd08910 197 LKDMQKACQ 205 (207)
T ss_pred HHHHHHHHh
Confidence 88886 564
No 50
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.44 E-value=0.0005 Score=71.25 Aligned_cols=149 Identities=25% Similarity=0.352 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeec--cCCCcceeeeeeeEEe-echhHHHHHhcCCCC--------
Q 048771 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAI--SHGCSGVAARACGLVG-LEPTRVAEILKDRPR-------- 229 (814)
Q Consensus 161 lA~~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~~~--~~~~~~eAsR~~glV~-~~~~~LVe~lmD~~~-------- 229 (814)
.-++.+++|++.++...=-|+...+ ++.+.+... +.+..---=|.+.-|. ..+.-|-++|.|+..
T Consensus 10 ~l~~~~~~~lre~~ek~kgW~~~~~----~~~vev~~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~WD~~m~e~ 85 (205)
T cd08907 10 YLEDNVQCLLREASERFKGWHSAPG----PDNTELACKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLRERHLWDEDLLHS 85 (205)
T ss_pred HHHHHHHHHHHHhhhccCCceeecC----CCCcEEEEEeCCCCCceEEEEEEEEecCCCHHHHHHHhhchhhhhHHHHhh
Confidence 4567788999999877778987532 222211111 1111111112222222 244556678888665
Q ss_pred ------C-Cce--eee--ccccccCceeeEEEeec-ccCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCcceEEeeC
Q 048771 230 ------G-SAI--LYA--LTTLAPARDFWLLRYTS-VLEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRPC 297 (814)
Q Consensus 230 ------~-G~~--M~a--~SpLvp~Re~~fLRyck-q~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~ 297 (814)
+ -+. =|+ -.+.+|+|||.+||.-+ .+..|.-+|+.+|++... .++... +|+--+=|||||+++
T Consensus 86 ~~Ie~Ld~n~dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~----~pp~~g-VRa~~l~sgYlIep~ 160 (205)
T cd08907 86 QVIEALENNTEVYHYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDN----PQLEAG-VRAVLLTSQYLIEPC 160 (205)
T ss_pred hhheeecCCCEEEEEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCc----CCCCCC-eEEEEEeccEEEEEC
Confidence 1 111 144 23568999999999875 477889999999998643 233334 999999999999999
Q ss_pred CCCceEEEEEEeeeccCCCcCc
Q 048771 298 EGGGSIIHIVDHMDLEPWSVPE 319 (814)
Q Consensus 298 ~nG~skVtwVeH~e~d~~~v~~ 319 (814)
+.|.|+||-+-|++..-+ .|+
T Consensus 161 g~g~s~ltyi~rvD~rG~-~P~ 181 (205)
T cd08907 161 GMGRSRLTHICRADLRGR-SPD 181 (205)
T ss_pred CCCCeEEEEEEEeCCCCC-CcH
Confidence 999999999999987544 444
No 51
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.39 E-value=9.4e-05 Score=77.86 Aligned_cols=58 Identities=29% Similarity=0.574 Sum_probs=53.9
Q ss_pred CCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 14 DNGKYVRYTPEQVEALERLYHE---CPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 14 ~~rkr~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
.+|||..|+..-.++|..+|.. +|||+...+++||+++ |++..||-.||.|+|-+.||
T Consensus 188 arRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqC----nItvsQvsnwfgnkrIrykK 248 (334)
T KOG0774|consen 188 ARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQC----NITVSQVSNWFGNKRIRYKK 248 (334)
T ss_pred HHHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHc----Cceehhhccccccceeehhh
Confidence 3578889999999999999965 6999999999999999 99999999999999999987
No 52
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.31 E-value=0.0087 Score=62.15 Aligned_cols=177 Identities=16% Similarity=0.177 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeec-cCCCcceeeeeeeEEeechhHHHHHhcCCCC--------
Q 048771 159 LSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAI-SHGCSGVAARACGLVGLEPTRVAEILKDRPR-------- 229 (814)
Q Consensus 159 ~~lA~~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~~~-~~~~~~eAsR~~glV~~~~~~LVe~lmD~~~-------- 229 (814)
++-+...|.|+++.-+. +.-|...... .| +.++-. ..+....+-|.-|++..++..+.++|.|.+.
T Consensus 4 ~~~~~~~~~~~~~~l~~-~~~W~~~~~~-~~---i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~ 78 (215)
T cd08877 4 IRQEATIMQENLKDLDE-SDGWTLQKES-EG---IRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFC 78 (215)
T ss_pred HHHHHHHHHHHHhcccC-CCCcEEeccC-CC---eEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccc
Confidence 44455678888877664 6679875321 12 222211 1122246789999999999999999999876
Q ss_pred ---------CCc--eee----eccccccCceeeEE-Eeeccc-CCCcEEEEEeeccCCCC-----CCCCCCCC-Ccccee
Q 048771 230 ---------GSA--ILY----ALTTLAPARDFWLL-RYTSVL-EDGSLVVCERSLKNIQN-----GPTMPPVQ-HFVRAE 286 (814)
Q Consensus 230 ---------~G~--~M~----a~SpLvp~Re~~fL-Ryckq~-~~G~waVvDvSld~~~~-----~~~~~~~~-~~~r~~ 286 (814)
+-+ ..| +|-| +..||+.+. +.+..+ ++|..+|+=.|++.... ....|... .++|.+
T Consensus 79 ~~~~~l~~~~~~~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~ 157 (215)
T cd08877 79 IRSKKVKQLGRADKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRI 157 (215)
T ss_pred eeeEEEeecCCceEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEE
Confidence 111 112 2555 888999975 556667 99999999999985321 11134444 789999
Q ss_pred ecCcceEEeeCCCCceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHHH-HHH
Q 048771 287 MLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALR-QLR 344 (814)
Q Consensus 287 rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~Lr-~~e 344 (814)
...+|++|+++++|.|+|+++-|++-.-+-||. -|++...--.....+..|| .|+
T Consensus 158 ~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~---~liN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 158 IKYYGFVITPISPTKCYLRFVANVDPKMSLVPK---SLLNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred EecceEEEEEcCCCCeEEEEEEEcCCCcccCCH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999997633232775 4454444445555556664 444
No 53
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.28 E-value=6.4e-05 Score=58.52 Aligned_cols=34 Identities=35% Similarity=0.637 Sum_probs=28.8
Q ss_pred cCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhH
Q 048771 35 ECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCR 72 (814)
Q Consensus 35 ~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK 72 (814)
.+|||+..++.+|+++. ||+.+||..||-|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~t----gls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQT----GLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHH----TS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHhHcc
Confidence 46999999999999999 99999999999999865
No 54
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.25 E-value=0.005 Score=65.38 Aligned_cols=171 Identities=16% Similarity=0.179 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHhcC--CCcceeeCCCCCCCCCccceeeccCCCcceeeeeeeEEe-echhHHHHHhcCCCC-------
Q 048771 160 SIAEETLTEFLSKATG--TAVEWVQMPGMKPGPDSVGIVAISHGCSGVAARACGLVG-LEPTRVAEILKDRPR------- 229 (814)
Q Consensus 160 ~lA~~Am~Ell~la~~--~eplWi~~~g~k~g~d~~~~~~~~~~~~~eAsR~~glV~-~~~~~LVe~lmD~~~------- 229 (814)
..-++-.+|.+++|.. ++..|--... +.|--++.......+.....=|+.++|. ..+..+.+.|.|.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~W~l~~~-~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~ 84 (235)
T cd08872 6 PEVDEKVQEQLTYALEDVGADGWQLFAE-EGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETT 84 (235)
T ss_pred HHHHHHHHHHHHHHHccCCCCCCEEEEe-CCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhh
Confidence 3446678899999985 4557865421 1111111100000122223578888888 889999999999986
Q ss_pred ----------C-Cc-eeee----ccccccCceeeEEEeecccCC-------CcEEEEEeeccCCCCCCCCCCCCCcccee
Q 048771 230 ----------G-SA-ILYA----LTTLAPARDFWLLRYTSVLED-------GSLVVCERSLKNIQNGPTMPPVQHFVRAE 286 (814)
Q Consensus 230 ----------~-G~-~M~a----~SpLvp~Re~~fLRyckq~~~-------G~waVvDvSld~~~~~~~~~~~~~~~r~~ 286 (814)
+ .+ ..|. |-| +..|||.++|+.++.++ +.|+||..|++. +..|+...++|++
T Consensus 85 ~~~~~vie~l~~~~~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h----~~~P~~~g~VRv~ 159 (235)
T cd08872 85 LENFHVVETLSQDTLIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDH----DSAPLNNKCVRAK 159 (235)
T ss_pred hheeEEEEecCCCCEEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccC----ccCCCCCCeEEEE
Confidence 1 22 2333 777 68999999999998776 789999999874 3345555788887
Q ss_pred e---cCcceEEeeC--------CCCceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHH
Q 048771 287 M---LPSGYLIRPC--------EGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAAL 340 (814)
Q Consensus 287 r---lPSGclIq~~--------~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~L 340 (814)
. +=.|.+|.+= +||.|+||++-|++---+ +|. .+++.....++-.++.-|
T Consensus 160 ~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~-iP~---wvvn~~~k~~~P~~l~~~ 220 (235)
T cd08872 160 LTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGW-APA---SVLRAVYKREYPKFLKRF 220 (235)
T ss_pred EEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCC-ccH---HHHHHHHHhhchHHHHHH
Confidence 5 2334333331 588999999999975433 443 344444444444555544
No 55
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.21 E-value=0.0026 Score=67.56 Aligned_cols=102 Identities=21% Similarity=0.228 Sum_probs=79.7
Q ss_pred eeeeeeEEeechhHHHHHhcCCCC-----------------CCc--eeee--ccc-cccCceeeEEEeeccc-CC-CcEE
Q 048771 206 AARACGLVGLEPTRVAEILKDRPR-----------------GSA--ILYA--LTT-LAPARDFWLLRYTSVL-ED-GSLV 261 (814)
Q Consensus 206 AsR~~glV~~~~~~LVe~lmD~~~-----------------~G~--~M~a--~Sp-Lvp~Re~~fLRyckq~-~~-G~wa 261 (814)
+-|.-+.|...+.+|.+.|.|.+. +.. ..|. ++| -+.+|||-++|+.++. ++ +..+
T Consensus 78 ~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~~~~ 157 (235)
T cd08873 78 SFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSLTSEKPNDFVLLVSRRKPATDGDPYK 157 (235)
T ss_pred EEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcCCCCCCCCceEEEEEEEEeccCCCCeEE
Confidence 446666689999999999999987 111 3444 454 3889999999999984 44 3377
Q ss_pred EEEeeccCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeee
Q 048771 262 VCERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMD 311 (814)
Q Consensus 262 VvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e 311 (814)
|.=.|+.. +..|+...|+|++.+=+|++|++.++|.|+||.+-|+|
T Consensus 158 I~~~SV~h----~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 158 VAFRSVTL----PRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred EEEeeeec----ccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 77777652 23455668999999999999999999999999999986
No 56
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.14 E-value=0.00039 Score=72.04 Aligned_cols=63 Identities=33% Similarity=0.610 Sum_probs=57.6
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHH
Q 048771 12 SLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 78 (814)
Q Consensus 12 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe 78 (814)
.+.++.++.++..|+..++..|...++|+...+.+|+..+ |++++.+++||||+|++.|+.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~----~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 151 KKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEET----GLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred cccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhc----CCChhhhhhhcccHHHHHHhhcc
Confidence 4556778899999999999999999999999999999999 99999999999999999998543
No 57
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.07 E-value=0.0083 Score=60.77 Aligned_cols=127 Identities=19% Similarity=0.221 Sum_probs=88.4
Q ss_pred eeeeeeeEEeechhHHHHHhcCCCC-----------------CC-c-eeee----ccccccCceeeEEEeecc-cCCCcE
Q 048771 205 VAARACGLVGLEPTRVAEILKDRPR-----------------GS-A-ILYA----LTTLAPARDFWLLRYTSV-LEDGSL 260 (814)
Q Consensus 205 eAsR~~glV~~~~~~LVe~lmD~~~-----------------~G-~-~M~a----~SpLvp~Re~~fLRyckq-~~~G~w 260 (814)
-.-|.+++|...+.++.+++.|.+. +. . .+|. |=| |..|||.+.|.... .++|..
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~p-vs~Rdfv~~~~~~~~~~~~~~ 119 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWP-VKDRDMVLRSTTEQDADDGSV 119 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccc-cCCceEEEEEEEEEcCCCCEE
Confidence 4568999999999999999999887 22 2 2222 323 77899998764433 336777
Q ss_pred EEEEeeccCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHH
Q 048771 261 VVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAAL 340 (814)
Q Consensus 261 aVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~L 340 (814)
+|.=.|.+.. .|....++|++.+.+|+.|++.++|.|+|+++-|++..-+ +|. .+++.-..=+...++.+|
T Consensus 120 ~i~~~s~~~~-----~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~-iP~---~lv~~~~~~~~~~~l~~l 190 (195)
T cd08876 120 TITLEAAPEA-----LPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS-IPG---WLANAFAKDAPYNTLENL 190 (195)
T ss_pred EEEeecCCcc-----CCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC-CCH---HHHHHHHHHHHHHHHHHH
Confidence 6666665532 1223478899999999999999999999999999998743 443 333333333455666777
Q ss_pred H
Q 048771 341 R 341 (814)
Q Consensus 341 r 341 (814)
+
T Consensus 191 ~ 191 (195)
T cd08876 191 R 191 (195)
T ss_pred H
Confidence 4
No 58
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.01 E-value=0.044 Score=56.88 Aligned_cols=169 Identities=19% Similarity=0.233 Sum_probs=119.9
Q ss_pred HHHHHHHHhcCCC--cceeeCCCCCCCCCc-cceeecc-CCCcceeeeeeeEE-eechhHHHHHhcCCCC----------
Q 048771 165 TLTEFLSKATGTA--VEWVQMPGMKPGPDS-VGIVAIS-HGCSGVAARACGLV-GLEPTRVAEILKDRPR---------- 229 (814)
Q Consensus 165 Am~Ell~la~~~e--plWi~~~g~k~g~d~-~~~~~~~-~~~~~eAsR~~glV-~~~~~~LVe~lmD~~~---------- 229 (814)
=+.||+...+... ..|-.... |.|+.+ +.+.-.. .+...-.=|..+++ .+.+..|.+.|+|.+.
T Consensus 7 d~~~~~~~~~~~~~~~~W~~~~~-k~~~~~~i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~ 85 (209)
T cd08870 7 DLRDLVQELQEGAEGQAWQQVMD-KSTPDMSYQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIE 85 (209)
T ss_pred HHHHHHHHhcCcCCCCcceEhhh-ccCCCceEEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheee
Confidence 3556666655442 57987643 234222 3222111 22334567889988 5799999999999875
Q ss_pred --------C-Cc-eeee----ccccccCceeeEEEeecccCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCcceEEe
Q 048771 230 --------G-SA-ILYA----LTTLAPARDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIR 295 (814)
Q Consensus 230 --------~-G~-~M~a----~SpLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq 295 (814)
. |+ .+|- |-|+ -.||+-+.|-..+..+|..+|+=.|++. +..|.. .++|.+..=||++|+
T Consensus 86 ~~~le~~~~~~~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~i~~~sv~~----~~~P~~-~~vRv~~~~~~~~i~ 159 (209)
T cd08870 86 HETLEEDEKSGTEIVRWVKKFPFPL-SDREYVIARRLWESDDRSYVCVTKGVPY----PSVPRS-GRKRVDDYESSLVIR 159 (209)
T ss_pred EEEEEecCCCCcEEEEEEEECCCcC-CCceEEEEEEEEEcCCCEEEEEEeCCcC----CCCCCC-CcEEEEEEEeEEEEE
Confidence 2 44 3333 5555 9999999987777778998888888774 233444 789999999999999
Q ss_pred eC--CCCceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHHH-HHH
Q 048771 296 PC--EGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALR-QLR 344 (814)
Q Consensus 296 ~~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~Lr-~~e 344 (814)
+. .+|.|+|+++-|.+- ...+|. -|++.....|...++..|| .|+
T Consensus 160 p~~~~~~~t~~~~~~~~dp-~G~IP~---wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 160 AVKGDGQGSACEVTYFHNP-DGGIPR---ELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred EecCCCCceEEEEEEEECC-CCCCCH---HHHHHHHHhhhHHHHHHHHHHHh
Confidence 99 789999999999973 335775 6788888889999999996 664
No 59
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=96.99 E-value=0.00054 Score=78.94 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=54.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHH
Q 048771 13 LDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 74 (814)
Q Consensus 13 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~K 74 (814)
..||.|..||..|...|..+|+++++|+....+.|+.+| ||....|..||-|-|.|.+
T Consensus 419 ~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL----~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 419 QTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQL----NLELSTVINFFMNARRRSL 476 (558)
T ss_pred cCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCcHHHHHHHHHhhhhhcc
Confidence 457789999999999999999999999999999999999 9999999999999888764
No 60
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=96.92 E-value=0.012 Score=52.26 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=80.3
Q ss_pred HHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEE
Q 048771 699 ILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICL 777 (814)
Q Consensus 699 ~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 777 (814)
.++.+.+ .|.+|+.-+ .+=.++|.|+++.+||+++-+++.+-+.---..+.++.+....+.+...++--....-+++
T Consensus 2 ~~~~i~~~~~~~i~~~d--~~g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (113)
T PF00989_consen 2 RYRAILENSPDGIFVID--EDGRILYVNQAAEELLGYSREELIGKSLFDLIHPEDRRELRERLRQALSQGESGESFEVRF 79 (113)
T ss_dssp HHHHHHHCSSSEEEEEE--TTSBEEEECHHHHHHHSS-HHHHTTSBGGGGCSGGGHHHHHHHHHHHHHHCCHECEEEEEE
T ss_pred HHHHHHhcCCceEEEEe--CcCeEEEECHHHHHHHccCHHHHcCCcHHHhcCchhhHHHHHHHHHHHHcCCCceeEEEEE
Confidence 3555554 899988888 6779999999999999999999999888877777766677777777777766554444555
Q ss_pred cC-CCCcEEEceeEEeEeecCCCceEEEEEecc
Q 048771 778 SS-MGRPVSYERAVAWKVLNEEETAHCICFMFI 809 (814)
Q Consensus 778 ss-~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~ 809 (814)
.. .|+.++++ ..+=.+.|.+|+..|.-.+|.
T Consensus 80 ~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 111 (113)
T PF00989_consen 80 RLRDGRPRWVE-VRASPVRDEDGQIIGILVIFR 111 (113)
T ss_dssp EETTSCEEEEE-EEEEEEEETTEEEEEEEEEEE
T ss_pred EecCCcEEEEE-EEEEEEEeCCCCEEEEEEEEE
Confidence 55 88888874 344455778888877766664
No 61
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=96.78 E-value=0.018 Score=59.74 Aligned_cols=130 Identities=18% Similarity=0.230 Sum_probs=93.6
Q ss_pred eeeeeeeEE-eechhHHHHHhcCCCC------------------C-Cc-eeee----ccccccCceeeEEEeeccc-CCC
Q 048771 205 VAARACGLV-GLEPTRVAEILKDRPR------------------G-SA-ILYA----LTTLAPARDFWLLRYTSVL-EDG 258 (814)
Q Consensus 205 eAsR~~glV-~~~~~~LVe~lmD~~~------------------~-G~-~M~a----~SpLvp~Re~~fLRyckq~-~~G 258 (814)
..=|+.+++ ...+..+++.|+|.+. . ++ .+|- |-|+ -.||+.+.|-..+. ++|
T Consensus 45 ~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~ 123 (207)
T cd08911 45 YEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPF-ANRDYVYVRRYIIDEENK 123 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCC-CCccEEEEEEEEEcCCCC
Confidence 456886655 7899999999999986 1 33 3333 7675 99999998876655 456
Q ss_pred cEEEEEeeccCCCCCCCCCCCCCccceeecCcceEEeeCC---CCceEEEEEEeeeccCC-CcCccchhhhchhHHHHHH
Q 048771 259 SLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRPCE---GGGSIIHIVDHMDLEPW-SVPEVLRPLYESSTVLAQK 334 (814)
Q Consensus 259 ~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~---nG~skVtwVeH~e~d~~-~v~~l~rpl~~Sg~afgar 334 (814)
.++|+-.|++. +..|....++|.....||++|++.. +++|+|+++-|. |+. .+|. -+++.-..-+.-
T Consensus 124 ~~~i~~~sv~h----p~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~---~lvN~~~~~~~~ 194 (207)
T cd08911 124 LIVIVSKAVQH----PSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPS---YITSWVAMSGMP 194 (207)
T ss_pred EEEEEEecCCC----CCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCH---HHHHHHHHhhcc
Confidence 77888888874 2334455789999999999999994 678999988885 655 4774 345555555666
Q ss_pred HHHHHHH-HHH
Q 048771 335 TTMAALR-QLR 344 (814)
Q Consensus 335 ~w~~~Lr-~~e 344 (814)
.|+.-|+ -|.
T Consensus 195 ~~l~~l~~a~~ 205 (207)
T cd08911 195 DFLERLRNAAL 205 (207)
T ss_pred HHHHHHHHHHh
Confidence 6777664 443
No 62
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.70 E-value=0.014 Score=62.27 Aligned_cols=106 Identities=23% Similarity=0.347 Sum_probs=80.5
Q ss_pred eeeeEEeechhHHHHHhcCCCC-----------------CCc-eeee---ccc--cccCceeeEEEeeccc-CCC-cEEE
Q 048771 208 RACGLVGLEPTRVAEILKDRPR-----------------GSA-ILYA---LTT--LAPARDFWLLRYTSVL-EDG-SLVV 262 (814)
Q Consensus 208 R~~glV~~~~~~LVe~lmD~~~-----------------~G~-~M~a---~Sp--Lvp~Re~~fLRyckq~-~~G-~waV 262 (814)
|.-++|...+..|.+.|.|.+. +.. ..|- +.+ -+..|||-.++...+. ++| .++|
T Consensus 84 K~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii 163 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDAIYHVTSPSLSGHGKPQDFVILASRRKPCDNGDPYVI 163 (240)
T ss_pred EEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCcEEEEEecCCCCCCCCCCeEEEEEEEEeccCCCccEEE
Confidence 6667999999999999999987 111 2232 333 6899999999888654 344 4666
Q ss_pred EEeeccCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCcCc
Q 048771 263 CERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE 319 (814)
Q Consensus 263 vDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~ 319 (814)
+=.|+.. |..|+...++|.+.+..|++|++.++|.|+||++-|++ +..+|.
T Consensus 164 ~~~sv~~----P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~LP~ 214 (240)
T cd08913 164 ALRSVTL----PTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVLPY 214 (240)
T ss_pred EEEEeec----CCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--CccccH
Confidence 6666552 33566678999999999999999999999999999998 335665
No 63
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=96.52 E-value=0.021 Score=50.36 Aligned_cols=104 Identities=13% Similarity=0.188 Sum_probs=81.9
Q ss_pred cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCcE
Q 048771 705 HHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPV 784 (814)
Q Consensus 705 ~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf 784 (814)
+.|++|+.-+ +|=.++|+|+++.++|..+-.++++.+...-..+..+++....+.++.+.|-.....-+... .|+..
T Consensus 3 ~~p~~i~v~D--~~~~i~~~N~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (110)
T PF08448_consen 3 SSPDGIFVID--PDGRIVYANQAAAELFGVSPEELIGRSLFDLLPPEDREEFQAALRRALAGGEPVFFEEILLR-DGEER 79 (110)
T ss_dssp HCSSEEEEEE--TTSBEEEE-HHHHHHHTSTHHHHTTSBHHHHSCCGCHHHHHHHHHHHHHHTSEEEEEEEECT-TSCEE
T ss_pred CCCceeEEEC--CCCEEEEEHHHHHHHhCCCHHHHhhccchhccccchhhhhHHHHHHhhccCceEEEEEEEee-cCCcE
Confidence 4677777774 47789999999999999999999999999877778999999999999999876554433333 56665
Q ss_pred EEceeEEeEeecCCCceEEEEEeccCcc
Q 048771 785 SYERAVAWKVLNEEETAHCICFMFINWS 812 (814)
Q Consensus 785 ~i~~a~vW~l~d~~g~~~gqAa~F~~W~ 812 (814)
++ +..+=-+.|++|...|..+++.|-+
T Consensus 80 ~~-~~~~~Pi~~~~g~~~g~~~~~~DiT 106 (110)
T PF08448_consen 80 WF-EVSISPIFDEDGEVVGVLVIIRDIT 106 (110)
T ss_dssp EE-EEEEEEEECTTTCEEEEEEEEEEEC
T ss_pred EE-EEEEEEeEcCCCCEEEEEEEEEECc
Confidence 55 4566667799999999988876643
No 64
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.38 E-value=0.025 Score=60.25 Aligned_cols=113 Identities=19% Similarity=0.331 Sum_probs=85.5
Q ss_pred eeeeeeeEEeechhHHHHHhcCCCC-----------------CCc-eeee----cc-ccccCceeeEEEeecccC-CCc-
Q 048771 205 VAARACGLVGLEPTRVAEILKDRPR-----------------GSA-ILYA----LT-TLAPARDFWLLRYTSVLE-DGS- 259 (814)
Q Consensus 205 eAsR~~glV~~~~~~LVe~lmD~~~-----------------~G~-~M~a----~S-pLvp~Re~~fLRyckq~~-~G~- 259 (814)
-+-|.-..|...+.+|.+.|.|.+. +.+ ..|- |- |+ ..|||-++|=..+.. +|.
T Consensus 78 l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~vY~~~~pPw~Pv-k~RD~V~~~s~~~~~~dg~~ 156 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQIYHITCPIVNND-KPKDLVVLVSRRKPLKDGNT 156 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcCEEEEecCCCCCC-CCceEEEEEEEEecCCCCCE
Confidence 3556677889999999999999997 211 2232 22 44 899999987766555 886
Q ss_pred EEEEEeeccCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCcCccchhh
Q 048771 260 LVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPL 324 (814)
Q Consensus 260 waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl 324 (814)
++|.=.|+.. +..|+...++|.+.+=+|++|++.++|.|+||.+-|+| +..+|...-.+
T Consensus 157 ~~I~~~SVp~----~~~Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~~~~n~ 215 (236)
T cd08914 157 YVVAVKSVIL----PSVPPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPYFAGNL 215 (236)
T ss_pred EEEEEeeccc----ccCCCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--CccchheEEec
Confidence 8888888764 34556678999999999999999999999999999995 46666544333
No 65
>PRK13557 histidine kinase; Provisional
Probab=96.09 E-value=0.042 Score=62.82 Aligned_cols=112 Identities=12% Similarity=-0.001 Sum_probs=79.7
Q ss_pred HHHHHHHhc-CCCeEeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCe
Q 048771 697 ESILKNLWH-HTDAVMCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGG 774 (814)
Q Consensus 697 ~~~~~~L~~-~p~avl~h~~~-~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 774 (814)
...+..+.+ .|.+|+-.+.. .|-.+.|+|+++.++|+|+.+|+.+.+...-..+...++....+.++...|-.....-
T Consensus 29 ~~~~~~~~~~~~~~i~v~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (540)
T PRK13557 29 SDIFFAAVETTRMPMIVTDPNQPDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQGPETDRATVAEVRDAIAERREIATEI 108 (540)
T ss_pred hHHHHHHHHhCcCcEEEEcCCCCCCCEEEEcHHHHHHhCCCHHHhcCCChHhhcCCCCCHHHHHHHHHHHHcCCCceEEE
Confidence 344555544 78887777653 4778999999999999999999999998766655554555555555555554333333
Q ss_pred eEEcCCCCcEEEceeEEeEeecCCCceEEEEEecc
Q 048771 775 ICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFI 809 (814)
Q Consensus 775 vRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~ 809 (814)
.+..+.|+.+++. ..+-.+.|.+|...|...+..
T Consensus 109 ~~~~~~G~~~~~~-~~~~~i~~~~g~~~~~~~~~~ 142 (540)
T PRK13557 109 LNYRKDGSSFWNA-LFVSPVYNDAGDLVYFFGSQL 142 (540)
T ss_pred EEEeCCCCEEEEE-EEEEEeECCCCCEEEEEEEec
Confidence 4567899999875 456668899999888766554
No 66
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=95.62 E-value=0.93 Score=47.34 Aligned_cols=65 Identities=23% Similarity=0.496 Sum_probs=44.5
Q ss_pred HHHhhhccCCCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHhh--
Q 048771 374 RGFNEAVNGFTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLRE-- 451 (814)
Q Consensus 374 ~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLRd-- 451 (814)
..|..-+ ...++|..... .++|+|..++..+ +.+...++...++.+||+.+|++|.|
T Consensus 13 ~~~~~~~--~~~~~W~~~~~--~~gi~iy~r~~~~-----------------~~~~~~k~~~~~~~~s~e~~~~~l~D~~ 71 (222)
T cd08871 13 EEFKKLC--DSTDGWKLKYN--KNNVKVWTKNPEN-----------------SSIKMIKVSAIFPDVPAETLYDVLHDPE 71 (222)
T ss_pred HHHHHHh--cCCCCcEEEEc--CCCeEEEEeeCCC-----------------CceEEEEEEEEeCCCCHHHHHHHHHChh
Confidence 3444333 33568997643 4679998877541 23444555565646999999999998
Q ss_pred hccchhcc
Q 048771 452 HRSEWADN 459 (814)
Q Consensus 452 ~R~eWd~l 459 (814)
.|.+||..
T Consensus 72 ~r~~Wd~~ 79 (222)
T cd08871 72 YRKTWDSN 79 (222)
T ss_pred hhhhhhhh
Confidence 89999964
No 67
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=94.90 E-value=0.018 Score=72.35 Aligned_cols=61 Identities=21% Similarity=0.337 Sum_probs=56.2
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHHH
Q 048771 15 NGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 79 (814)
Q Consensus 15 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe~ 79 (814)
+++|++++..|+..+..+|....+|...+.+.|...+ +++++.|.+||||-|.|.|+..++
T Consensus 904 ~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~----~~~~~~i~vw~qna~~~s~k~~~n 964 (1406)
T KOG1146|consen 904 RAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPI----GLPKRVIQVWFQNARAKSKKAKLN 964 (1406)
T ss_pred hhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccc----cCCcchhHHhhhhhhhhhhhhhhc
Confidence 4668999999999999999999999999999999999 999999999999999999986653
No 68
>PRK13559 hypothetical protein; Provisional
Probab=94.74 E-value=0.21 Score=54.77 Aligned_cols=113 Identities=11% Similarity=-0.039 Sum_probs=77.9
Q ss_pred HHHHHHHhc-CCCeEeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCe
Q 048771 697 ESILKNLWH-HTDAVMCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGG 774 (814)
Q Consensus 697 ~~~~~~L~~-~p~avl~h~~~-~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 774 (814)
...++.++. .|.+|+-.+.+ .+-.+.|.|.++.+||+++.+++.+.+.+.-..+....+....+..+.+.|-.....-
T Consensus 42 ~~~~~~~~e~~~~~i~i~D~~~~~g~i~~~N~a~~~l~G~~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 121 (361)
T PRK13559 42 GRLFEQAMEQTRMAMCITDPHQPDLPIVLANQAFLDLTGYAAEEVVGRNCRFLQGAATDPIAVAKIRAAIAAEREIVVEL 121 (361)
T ss_pred hhHHHHHHHhCCCcEEEecCCCCCCcEEEEchHHHHHhCCCHHHHcCCChhhhcCCCCCHHHHHHHHHHhccCCceEEEE
Confidence 445565554 78888888765 4668999999999999999999999887654444444444555566666665444444
Q ss_pred eEEcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 775 ICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 775 vRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
....+.|+.|+++- .+=-+.|++|.+.|...++.+
T Consensus 122 ~~~~~dG~~~~~~~-~~~~i~d~~G~~~~~v~~~~D 156 (361)
T PRK13559 122 LNYRKDGEPFWNAL-HLGPVYGEDGRLLYFFGSQWD 156 (361)
T ss_pred EEEcCCCCEEEEEE-EEEEEEcCCCCEEEeeeeeee
Confidence 55678888887643 222456888888776665544
No 69
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=94.53 E-value=2.2 Score=44.73 Aligned_cols=174 Identities=15% Similarity=0.273 Sum_probs=101.9
Q ss_pred CCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHhh--hccchhcccc
Q 048771 384 TDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLRE--HRSEWADNNI 461 (814)
Q Consensus 384 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l~~ 461 (814)
..++|.... ..+++.|..+++.+ .. |=| .++..-+ |.+|+.||+||.+ +|.+||-...
T Consensus 20 ~~~gWk~~k--~~~~~~v~~k~~~~--~~-------------gkl--~k~egvi-~~~~e~v~~~l~~~e~r~~Wd~~~~ 79 (204)
T cd08904 20 DTSGWKVVK--TSKKITVSWKPSRK--YH-------------GNL--YRVEGII-PESPAKLIQFMYQPEHRIKWDKSLQ 79 (204)
T ss_pred cccCCeEEe--cCCceEEEEEEcCC--CC-------------ceE--EEEEEEe-cCCHHHHHHHHhccchhhhhccccc
Confidence 348999873 34889999988752 11 112 3455566 8999999999997 9999996311
Q ss_pred chhhHHhhhcCCCCCCCCCcCCccceEEecccccCCCCceEEEEEeecCCCCCCCCCCCCceEEEeeccCCCCCCCCcee
Q 048771 462 DVYSAAAIKVGPCSLPGSRVGTFGSQVILPLAHTIEHEEFMEVIKLEGVGHSPEDAIMPRDMFLLQLCSGMDENAVGTCA 541 (814)
Q Consensus 462 ~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~~iLQe~~~~de~~~Gs~s 541 (814)
..+.+-+| +...+|...+..+.. -.-+-+||.+.+|-.--.+ |. .
T Consensus 80 -----------------------~~~iie~I----d~~T~I~~~~~~~~~---~~~vspRDfV~vr~~~r~~----~~-~ 124 (204)
T cd08904 80 -----------------------VYKMLQRI----DSDTFICHTITQSFA---MGSISPRDFVDLVHIKRYE----GN-M 124 (204)
T ss_pred -----------------------ceeeEEEe----CCCcEEEEEeccccc---CCcccCceEEEEEEEEEeC----CC-E
Confidence 12334333 555667766653310 1125678999998742223 22 2
Q ss_pred EEE-EeeccCC----CCCCC--CccCCceEEecCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCcceeeEe
Q 048771 542 ELI-FAPIDAS----FADDA--PLLPSGFRIIPLDSGKETSSPNRTLDLASALEIGPAGNRATNNYSTNSTCMRSVMTIA 614 (814)
Q Consensus 542 ~vV-yAPvD~~----~~~~v--~LLPSGF~I~P~~~~~dg~~~~~tldlas~le~g~~~~~~~~~~~~~~~~~gslLTva 614 (814)
+++ +.-|+-+ .+..| -..|+||.|.|+. + + .++|.||.-
T Consensus 125 ~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~--------------------~--------~------p~~t~l~~~ 170 (204)
T cd08904 125 NIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLP--------------------E--------N------PAYSKLVMF 170 (204)
T ss_pred EEEEEEecccCCCCCCCCcEEEeeeccEEEEEECC--------------------C--------C------CCceEEEEE
Confidence 333 3334332 24444 3789999999931 0 0 246889998
Q ss_pred ehhccccc-chhhHHHHHHHhHHHHHHHHHHHHHHc
Q 048771 615 FEFAFESH-MQEHVATMARQYVRSIISSVQRVALAL 649 (814)
Q Consensus 615 FQ~l~~~~-~~~sva~~~~~~v~~v~~tvq~I~~Al 649 (814)
+|+=.... +..-|..+.. .+++......+.||
T Consensus 171 ~~~DlkG~lP~~vv~~~~~---~~~~~f~~~~~~~~ 203 (204)
T cd08904 171 VQPELRGNLSRSVIEKTMP---TNLVNLILDAKDGI 203 (204)
T ss_pred EEeCCCCCCCHHHHHHHhH---HHHHHHHHHHHHhc
Confidence 88666554 4433332211 23445556665555
No 70
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=94.24 E-value=1.7 Score=44.80 Aligned_cols=131 Identities=21% Similarity=0.356 Sum_probs=76.5
Q ss_pred CCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHhhhccchhccccch
Q 048771 384 TDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNIDV 463 (814)
Q Consensus 384 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLRd~R~eWd~l~~~~ 463 (814)
..++|..... .++|+|.+++..+ + ..+..-++.+-+ +.+|+.|++.|.|.|.+||....
T Consensus 17 ~~~~W~~~~~--~~gi~I~~k~~~~---~-------------~~l~~~K~~~~v-~a~~~~v~~~l~d~r~~Wd~~~~-- 75 (197)
T cd08869 17 KSKGWVSVSS--SDHVELAFKKVDD---G-------------HPLRLWRASTEV-EAPPEEVLQRILRERHLWDDDLL-- 75 (197)
T ss_pred ccCCceEEec--CCcEEEEEEeCCC---C-------------CcEEEEEEEEEe-CCCHHHHHHHHHHHHhccchhhh--
Confidence 4689986642 4689999988641 1 024455778888 89999999999999999996411
Q ss_pred hhHHhhhcCCCCCCCCCcCCccceEEecccccCCCCceEEEEEeecCCCCCCCCCCCCceEEEeeccCCCCCCCCceeEE
Q 048771 464 YSAAAIKVGPCSLPGSRVGTFGSQVILPLAHTIEHEEFMEVIKLEGVGHSPEDAIMPRDMFLLQLCSGMDENAVGTCAEL 543 (814)
Q Consensus 464 ~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~~iLQe~~~~de~~~Gs~s~v 543 (814)
..+.+-.| +..+.|-=..+.... .+.+||+.+++-.. .++ ..|+|.+
T Consensus 76 ---------------------~~~vie~i----d~~~~i~y~~~~~p~-----pv~~RDfV~~r~~~-~~~-~~g~~~i- 122 (197)
T cd08869 76 ---------------------QWKVVETL----DEDTEVYQYVTNSMA-----PHPTRDYVVLRTWR-TDL-PKGACVL- 122 (197)
T ss_pred ---------------------eEEEEEEe----cCCcEEEEEEeeCCC-----CCCCceEEEEEEEE-ecC-CCCcEEE-
Confidence 13444444 222332222222221 24578888887542 332 3454222
Q ss_pred EEeeccCC--C-CCC--CCccCCceEEecC
Q 048771 544 IFAPIDAS--F-ADD--APLLPSGFRIIPL 568 (814)
Q Consensus 544 VyAPvD~~--~-~~~--v~LLPSGF~I~P~ 568 (814)
.+.-|+-+ - +.+ +..+++||.|-|+
T Consensus 123 ~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~ 152 (197)
T cd08869 123 VETSVEHTEPVPLGGVRAVVLASRYLIEPC 152 (197)
T ss_pred EEECCcCCCCCCCCCEEEEEEeeeEEEEEC
Confidence 22224321 1 133 3577888889884
No 71
>TIGR00229 sensory_box PAS domain S-box. The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator.
Probab=93.77 E-value=0.98 Score=36.87 Aligned_cols=107 Identities=8% Similarity=0.094 Sum_probs=65.3
Q ss_pred HHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEE-
Q 048771 700 LKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICL- 777 (814)
Q Consensus 700 ~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi- 777 (814)
++.++. .|.+++..+. +-.+.|.|.++.++|+++..++.+.+......+.........+.++.+.+......-+++
T Consensus 5 ~~~~~~~~~~~~~~~d~--~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (124)
T TIGR00229 5 YRAIFESSPDAIIVIDL--EGNILYVNPAFEEIFGYSAEELIGRNVLELIPEEDREEVRERIERLLEGEREPVSEERRVR 82 (124)
T ss_pred HHHHHhhCCceEEEEcC--CCcEEEEchHHHHHhCCChHHhcCcchhhhcChhhhHHHHHHHHHHHcCCCCCcceEeeeE
Confidence 455554 5667666553 557899999999999999999988877665555554444455556555332222223343
Q ss_pred cCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 778 SSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 778 ss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
...|+.+++.- .+-.+. ++|...|...++.+
T Consensus 83 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~d 113 (124)
T TIGR00229 83 RKDGSEIWVEV-SVSPIR-TNGGELGVVGIVRD 113 (124)
T ss_pred cCCCCEEEEEE-EEeehh-hCCCeeEEEEEeee
Confidence 56666655532 222233 56777776665543
No 72
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=93.04 E-value=0.56 Score=57.43 Aligned_cols=110 Identities=12% Similarity=0.072 Sum_probs=81.1
Q ss_pred HHHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeE
Q 048771 698 SILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGIC 776 (814)
Q Consensus 698 ~~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 776 (814)
..++.++. .|++|+..+. +=.++|.|+++.++|+++.+++.+.+..--..+.....-.....++.++|-...+.-..
T Consensus 155 ~~l~~il~~~~~~i~~~D~--~g~i~~~N~a~~~l~G~~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 232 (779)
T PRK11091 155 SLLRSFLDASPDLVYYRNE--DGEFSGCNRAMELLTGKSEKQLIGLTPKDVYSPEAAEKVIETDEKVFRHNVSLTYEQWL 232 (779)
T ss_pred HHHHHHHhcCcceEEEECC--CCcEEeEcHHHHHHhCcCHHHHcCCChHHhCCHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 33455554 7999888765 66899999999999999999999987665555544444445556677777666655556
Q ss_pred EcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 777 LSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 777 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
..+.|+.++++ ..+..+.|++|...|...++.+
T Consensus 233 ~~~~G~~~~~~-~~~~pi~~~~g~~~g~v~~~~D 265 (779)
T PRK11091 233 DYPDGRKACFE-LRKVPFYDRVGKRHGLMGFGRD 265 (779)
T ss_pred EcCCCCEEEEE-EEeeeEEcCCCCEEEEEEEEee
Confidence 67789888774 4566778999999988877754
No 73
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=93.03 E-value=0.06 Score=59.92 Aligned_cols=58 Identities=24% Similarity=0.311 Sum_probs=49.5
Q ss_pred CCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 14 DNGKYVRYTPEQVEALERLYHE---CPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 14 ~~rkr~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
.+|++..+......+|+....+ .|||+...+..|++++ ||+..||..||-|.|-|..+
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~T----GLs~~Qv~NWFINaR~R~w~ 299 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQT----GLSRPQVSNWFINARVRLWK 299 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhc----CCCcccCCchhhhcccccCC
Confidence 3455668889999999987444 4899999999999999 99999999999999977665
No 74
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=92.78 E-value=0.71 Score=48.30 Aligned_cols=56 Identities=18% Similarity=0.303 Sum_probs=38.9
Q ss_pred CCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHhh--hccchhcc
Q 048771 383 FTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLRE--HRSEWADN 459 (814)
Q Consensus 383 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 459 (814)
-..++|. +.. ..++|+|.++... + . .. .+++. + -+ ++||+.|+++|.| .|.+||..
T Consensus 19 ~~~~gW~-l~~-~~~gI~Vy~k~~~----~-~---------~~-~~~ge-~--~v-~as~~~v~~ll~D~~~r~~Wd~~ 76 (205)
T cd08874 19 QATAGWS-YQC-LEKDVVIYYKVFN----G-T---------YH-GFLGA-G--VI-KAPLATVWKAVKDPRTRFLYDTM 76 (205)
T ss_pred hccCCcE-EEe-cCCCEEEEEecCC----C-C---------cc-eEEEE-E--EE-cCCHHHHHHHHhCcchhhhhHHh
Confidence 5677994 432 3578999887643 1 1 12 34543 2 45 8999999999998 99999963
No 75
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=92.75 E-value=5.7 Score=41.27 Aligned_cols=72 Identities=18% Similarity=0.343 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHH
Q 048771 365 LRALSQRLSRGFNEAVNGFTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAI 444 (814)
Q Consensus 365 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~ 444 (814)
|++.|. ++..|...+.. .++|..... .++|+|..|... .|.+++.++-..+ +.|+..
T Consensus 4 ~~~~~~-~~~~~~~~l~~--~~~W~~~~~--~~~i~v~~r~~~-----------------~~~~~~~k~e~~i-~~~~~~ 60 (215)
T cd08877 4 IRQEAT-IMQENLKDLDE--SDGWTLQKE--SEGIRVYYKFEP-----------------DGSLLSLRMEGEI-DGPLFN 60 (215)
T ss_pred HHHHHH-HHHHHHhcccC--CCCcEEecc--CCCeEEEEEeCC-----------------CCCEEEEEEEEEe-cCChhH
Confidence 333343 34455656655 778998752 478999998864 2348999999999 899999
Q ss_pred HHHHHhh--hccchhcc
Q 048771 445 LLRFLRE--HRSEWADN 459 (814)
Q Consensus 445 lf~FLRd--~R~eWd~l 459 (814)
++..|+| .+.+|+-.
T Consensus 61 ~~~vl~d~~~~~~W~p~ 77 (215)
T cd08877 61 LLALLNEVELYKTWVPF 77 (215)
T ss_pred eEEEEehhhhHhhhccc
Confidence 9999998 99999975
No 76
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=92.71 E-value=8.9 Score=38.77 Aligned_cols=60 Identities=18% Similarity=0.335 Sum_probs=44.1
Q ss_pred ccC-CCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHhh--hccch
Q 048771 380 VNG-FTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLRE--HRSEW 456 (814)
Q Consensus 380 v~~-s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eW 456 (814)
.++ |++.+|..... .++|+|..++..+ +.+..-+++..+ +.||+.+++++.| +|.+|
T Consensus 10 ~~~~~~~~~W~~~~~--~~~v~v~~~~~~~-----------------~~~~~~k~~~~i-~~s~e~v~~vi~d~e~~~~w 69 (195)
T cd08876 10 GAALAPDGDWQLVKD--KDGIKVYTRDVEG-----------------SPLKEFKAVAEV-DASIEAFLALLRDTESYPQW 69 (195)
T ss_pred ccccCCCCCCEEEec--CCCeEEEEEECCC-----------------CCeEEEEEEEEE-eCCHHHHHHHHhhhHhHHHH
Confidence 344 44555988753 4789999877541 124555777778 7999999999998 89999
Q ss_pred hcc
Q 048771 457 ADN 459 (814)
Q Consensus 457 d~l 459 (814)
|..
T Consensus 70 ~~~ 72 (195)
T cd08876 70 MPN 72 (195)
T ss_pred Hhh
Confidence 964
No 77
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=92.67 E-value=0.19 Score=48.04 Aligned_cols=94 Identities=12% Similarity=0.162 Sum_probs=55.7
Q ss_pred CCcccCCHHHHH-HHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHHHHHHHHhhHHHHHhhH
Q 048771 16 GKYVRYTPEQVE-ALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNK 94 (814)
Q Consensus 16 rkr~r~T~~Ql~-~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe~~~l~~~n~~l~~~n~ 94 (814)
+++.+||.++.. ++...+... ....++|+++ |+++.++..|.+- .+.......-............
T Consensus 8 ~~rr~ys~EfK~~aV~~~~~~g-----~sv~evA~e~----gIs~~tl~~W~r~----y~~~~~~~~~~~~~~~~~~~~~ 74 (121)
T PRK09413 8 EKRRRRTTQEKIAIVQQSFEPG-----MTVSLVARQH----GVAASQLFLWRKQ----YQEGSLTAVAAGEQVVPASELA 74 (121)
T ss_pred CCCCCCCHHHHHHHHHHHHcCC-----CCHHHHHHHH----CcCHHHHHHHHHH----HhhcccccccccccCCchhHHH
Confidence 445678887654 444444432 2467789999 9999999999532 2211100000000000111223
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 95 LLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 95 ~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
.+.+++.+|.+++.+|+.||+-||+-..
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788899999999999999987764
No 78
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=92.06 E-value=0.61 Score=52.34 Aligned_cols=110 Identities=12% Similarity=-0.016 Sum_probs=70.9
Q ss_pred HHHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeE
Q 048771 698 SILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGIC 776 (814)
Q Consensus 698 ~~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 776 (814)
+.++.+.. .|++|+.++. +..+.|.|.++.++|+++-+++.+.+...-..+....+....+.+....|-.....-.+
T Consensus 4 ~~~~~i~~~~~~~i~~~d~--~g~~~~~N~~~~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (494)
T TIGR02938 4 EAYRQTVDQAPLAISITDL--KANILYANDAFTRITGYTKEEIIGKNESVLSNHTTPPEVYQALWGSLAEQKPWAGKLLN 81 (494)
T ss_pred HHHHHHHHhCCceEEEECC--CCcEEEEchhheeecCCCHHHHhCCCchhhcCCCCCHHHHHHHHHHHHhCCcccceeec
Confidence 34555554 7888888886 56899999999999999999999876443333332333233333333333323333344
Q ss_pred EcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 777 LSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 777 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
..+.|+.++++ ..+-.+.|++|...|.-.++.+
T Consensus 82 ~~~~g~~~~~~-~~~~~~~~~~g~~~~~~~~~~D 114 (494)
T TIGR02938 82 RRKDGELYLAE-LTVAPVLNEAGETTHFLGMHRD 114 (494)
T ss_pred cCCCccchhhh-eeeEEEECCCCCEEEEEEehhh
Confidence 56788888764 3445677889998887666643
No 79
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=91.80 E-value=2.8 Score=32.09 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=56.3
Q ss_pred CCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEE-cCCCCcEE
Q 048771 707 TDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICL-SSMGRPVS 785 (814)
Q Consensus 707 p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi-ss~Grrf~ 785 (814)
|.+++..+. +-.+.|.|.++.++|+++..++.+.+...-..+..+......+.++.+.+-...+ -+++ ...|...+
T Consensus 2 ~~~i~~~d~--~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (103)
T cd00130 2 PDGVIVLDL--DGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLSGGEPVTL-EVRLRRKDGSVIW 78 (103)
T ss_pred CceEEEECC--CCcEEEECHHHHHHhCCCHHHHcCccHHHhcCCccchHHHHHHHHHHhcCcCeEE-EEEEEccCCCEEE
Confidence 344555443 4567899999999999999999887766555555554445555555543222211 2222 33355554
Q ss_pred EceeEEeEeecCCCceEEEEEec
Q 048771 786 YERAVAWKVLNEEETAHCICFMF 808 (814)
Q Consensus 786 i~~a~vW~l~d~~g~~~gqAa~F 808 (814)
+. ..+-.+.+.+|...+...++
T Consensus 79 ~~-~~~~~~~~~~~~~~~~~~~~ 100 (103)
T cd00130 79 VL-VSLTPIRDEGGEVIGLLGVV 100 (103)
T ss_pred EE-EEEEEEecCCCCEEEEEEEE
Confidence 43 23333445666666655544
No 80
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=91.53 E-value=4.2 Score=40.12 Aligned_cols=126 Identities=22% Similarity=0.330 Sum_probs=74.8
Q ss_pred CCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHhh--hccchhccccch
Q 048771 386 EGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLRE--HRSEWADNNIDV 463 (814)
Q Consensus 386 ~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l~~~~ 463 (814)
++|..+... ++|+|..++..+ +.+...++..-+ +.|+..|+++|.| .|.+||....+
T Consensus 15 ~~W~~~~~~--~~v~vy~~~~~~-----------------~~~~~~k~~~~i-~~~~~~v~~~l~d~~~~~~w~~~~~~- 73 (193)
T cd00177 15 EGWKLVKEK--DGVKIYTKPYED-----------------SGLKLLKAEGVI-PASPEQVFELLMDIDLRKKWDKNFEE- 73 (193)
T ss_pred CCeEEEEEC--CcEEEEEecCCC-----------------CCceeEEEEEEE-CCCHHHHHHHHhCCchhhchhhcceE-
Confidence 589987533 478887766541 123455566667 7899999999996 89999953111
Q ss_pred hhHHhhhcCCCCCCCCCcCCccceEEecccccCCCCceEEEEEeecCCCCCCCCCCCCceEEEeeccCCCCCCCCceeEE
Q 048771 464 YSAAAIKVGPCSLPGSRVGTFGSQVILPLAHTIEHEEFMEVIKLEGVGHSPEDAIMPRDMFLLQLCSGMDENAVGTCAEL 543 (814)
Q Consensus 464 ~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~~iLQe~~~~de~~~Gs~s~v 543 (814)
..++..+.. +..|--.+....- .+-+|+++++..+ ..++ .|. -++
T Consensus 74 ----------------------~~vl~~~~~----~~~i~~~~~~~p~-----p~~~Rdfv~~~~~-~~~~--~~~-~~~ 118 (193)
T cd00177 74 ----------------------FEVIEEIDE----HTDIIYYKTKPPW-----PVSPRDFVYLRRR-RKLD--DGT-YVI 118 (193)
T ss_pred ----------------------EEEEEEeCC----CeEEEEEEeeCCC-----ccCCccEEEEEEE-EEcC--CCe-EEE
Confidence 233333322 2233333333321 1567899999875 3453 342 467
Q ss_pred EEeeccCCC-C---CC--CCccCCceEEec
Q 048771 544 IFAPIDASF-A---DD--APLLPSGFRIIP 567 (814)
Q Consensus 544 VyAPvD~~~-~---~~--v~LLPSGF~I~P 567 (814)
+..+||... | +. ..++++||.|-|
T Consensus 119 ~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~ 148 (193)
T cd00177 119 VSKSVDHDSHPKEKGYVRAEIKLSGWIIEP 148 (193)
T ss_pred EEeecCCCCCCCCCCcEEEEEEccEEEEEE
Confidence 777777641 1 22 235577777777
No 81
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=91.14 E-value=0.88 Score=38.64 Aligned_cols=46 Identities=28% Similarity=0.438 Sum_probs=34.1
Q ss_pred chhHHHhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 048771 69 RRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYEN 114 (814)
Q Consensus 69 RRaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN 114 (814)
|+++.|++.....|+.....|..+|..|+.++..|..+...|..+|
T Consensus 18 r~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 18 RRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3667777777777888777788888877777777777777666665
No 82
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=90.79 E-value=0.085 Score=44.21 Aligned_cols=42 Identities=19% Similarity=0.408 Sum_probs=31.0
Q ss_pred HHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccch
Q 048771 25 QVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRR 70 (814)
Q Consensus 25 Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRR 70 (814)
-++.|+..|...+++....-..|..+. +|+..||+-||--|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS----~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKS----RMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHT----T--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHH----CCCHHHHHHHHHHhc
Confidence 356799999999999999999999999 999999999996543
No 83
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=90.67 E-value=25 Score=37.12 Aligned_cols=58 Identities=24% Similarity=0.381 Sum_probs=42.1
Q ss_pred CCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHhhhccchhcc
Q 048771 383 FTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADN 459 (814)
Q Consensus 383 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLRd~R~eWd~l 459 (814)
-...+|..... .++|.|.+++..+ + .|--.+. .|+=++.+|.+.|+|.|+| |..||.-
T Consensus 24 ek~kgW~~~~~--~~~vev~~kk~~d---~----------~~l~lwk---~s~ei~~~p~~vl~rvL~d-R~~WD~~ 81 (205)
T cd08907 24 ERFKGWHSAPG--PDNTELACKKVGD---G----------HPLRLWK---VSTEVEAPPSVVLQRVLRE-RHLWDED 81 (205)
T ss_pred hccCCceeecC--CCCcEEEEEeCCC---C----------CceEEEE---EEEEecCCCHHHHHHHhhc-hhhhhHH
Confidence 55679987643 5789999998752 2 1222444 4455678999999999999 9999964
No 84
>smart00340 HALZ homeobox associated leucin zipper.
Probab=89.77 E-value=0.67 Score=36.65 Aligned_cols=33 Identities=33% Similarity=0.313 Sum_probs=26.8
Q ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 048771 77 KEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYE 113 (814)
Q Consensus 77 qe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~E 113 (814)
|.+.+++ -|+..++.+.+||++|++|+++|+.-
T Consensus 2 QTEvdCe----~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 2 QTEVDCE----LLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred chHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555 48899999999999999999988864
No 85
>PRK13558 bacterio-opsin activator; Provisional
Probab=89.35 E-value=2.5 Score=50.77 Aligned_cols=105 Identities=7% Similarity=-0.066 Sum_probs=75.8
Q ss_pred cCCCeEeecCC-CCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCc
Q 048771 705 HHTDAVMCCSL-KALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRP 783 (814)
Q Consensus 705 ~~p~avl~h~~-~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grr 783 (814)
+.|..|...+. ..+..+.|.|.+..++|+++-+++.+.+...-..+..+.++...+.++.+.|-.....-....+.|..
T Consensus 156 ~~~~gi~~~d~~~~dg~i~~~N~~~~~l~G~~~eel~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 235 (665)
T PRK13558 156 EAPVGITIADATLPDEPLIYINDAFERITGYSPDEVLGRNCRFLQGEDTNEERVAELREAIDEERPTSVELRNYRKDGST 235 (665)
T ss_pred cCCccEEEEcCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHHHhcCCCccHHHHHHHHHHHhcCCCeEEEEEEECCCCCE
Confidence 47888777764 36788999999999999999999999887766666666666666666666665433333345678888
Q ss_pred EEEceeEEeEeecCCCceEEEEEeccC
Q 048771 784 VSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 784 f~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
++++ ..+=.+.|++|...|...++.+
T Consensus 236 ~~~~-~~~~pi~d~~G~~~~~vgi~~D 261 (665)
T PRK13558 236 FWNQ-VDIAPIRDEDGTVTHYVGFQTD 261 (665)
T ss_pred EEEE-EEEEEEECCCCCEEEEEEEEEe
Confidence 7764 2333567889998887776654
No 86
>PRK13560 hypothetical protein; Provisional
Probab=89.33 E-value=2.2 Score=51.61 Aligned_cols=109 Identities=7% Similarity=-0.058 Sum_probs=71.5
Q ss_pred HHHHh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEc
Q 048771 700 LKNLW-HHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLS 778 (814)
Q Consensus 700 ~~~L~-~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRis 778 (814)
++.++ +.|++|+..+. |=.++|.|+++.++|+|+-+|+.+.+..--..+...+..+.........|-...+.-....
T Consensus 206 l~~l~e~~~~~i~~~d~--~g~i~~~N~~~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 283 (807)
T PRK13560 206 LQQLLDNIADPAFWKDE--DAKVFGCNDAACLACGFRREEIIGMSIHDFAPAQPADDYQEADAAKFDADGSQIIEAEFQN 283 (807)
T ss_pred HHHHHhhCCCeEEEEcC--CCCEEEEhHHHHHHhCCCHHHHcCCcchhcCCcchhHHHHHHHHHHhccCCceEEEEEEEc
Confidence 44444 47888887764 5689999999999999999999998876655444434433444444444433344445567
Q ss_pred CCCCcEEEcee-EEeEeecCCCceEEEEEeccC
Q 048771 779 SMGRPVSYERA-VAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 779 s~Grrf~i~~a-~vW~l~d~~g~~~gqAa~F~~ 810 (814)
+.|+.++++-. ..-.+.|++|...|...++.+
T Consensus 284 ~dG~~~~~~~~~~~~~~~~~~g~~~g~~~~~~D 316 (807)
T PRK13560 284 KDGRTRPVDVIFNHAEFDDKENHCAGLVGAITD 316 (807)
T ss_pred CCCCEEEEEEEecceEEEcCCCCEEEEEEEEEe
Confidence 88988855321 122345788888887666543
No 87
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=88.81 E-value=2.7 Score=47.93 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=61.8
Q ss_pred HHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEE
Q 048771 699 ILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICL 777 (814)
Q Consensus 699 ~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 777 (814)
.++.++. +|++|+..+. .+-.+.|.|.++.+||+|+.+++++.+..--..+..+......+.+...+|....+ =++.
T Consensus 134 r~~~l~e~~~~~i~~~d~-~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-~~~~ 211 (442)
T TIGR02040 134 RYRVVLEVSSDAVLLVDM-STGRIVEANSAAAALLGGVGQSLVGRAFPQEFEGRRREELMLTLRNVRATGSAAPV-RILL 211 (442)
T ss_pred HHHHHHhhCCceEEEEEC-CCCEEEEEcHHHHHHhCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCCcce-EEEE
Confidence 3455554 6888887765 24589999999999999999999999877666777788778888888888875433 2444
Q ss_pred cCCCCcE
Q 048771 778 SSMGRPV 784 (814)
Q Consensus 778 ss~Grrf 784 (814)
...|.++
T Consensus 212 ~~~~~~~ 218 (442)
T TIGR02040 212 RRSQKRL 218 (442)
T ss_pred cCCCeEE
Confidence 4445444
No 88
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=88.74 E-value=14 Score=38.29 Aligned_cols=131 Identities=16% Similarity=0.233 Sum_probs=73.3
Q ss_pred CCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHh-h--hccchhccc
Q 048771 384 TDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLR-E--HRSEWADNN 460 (814)
Q Consensus 384 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLR-d--~R~eWd~l~ 460 (814)
...+|.... +..++|.|.+|...+ .|-+ .++...+ ++||+.||++|- | .|.+||..+
T Consensus 22 ~~~~W~l~~-~~~~~i~i~~r~~~~----------------~~~~--~k~~~~i-~~~~~~v~~~l~~d~~~~~~Wd~~~ 81 (208)
T cd08868 22 TDPGWKLEK-NTTWGDVVYSRNVPG----------------VGKV--FRLTGVL-DCPAEFLYNELVLNVESLPSWNPTV 81 (208)
T ss_pred cCCCceEEE-ecCCCCEEEEEEcCC----------------CceE--EEEEEEE-cCCHHHHHHHHHcCccccceecCcc
Confidence 345998764 333488999887541 1223 4555667 899999998765 4 999999642
Q ss_pred cchhhHHhhhcCCCCCCCCCcCCccceEEecccccCCCCceEEEEEeecCCCCCCCCCCCCceEEEeeccCCCCCCCCce
Q 048771 461 IDVYSAAAIKVGPCSLPGSRVGTFGSQVILPLAHTIEHEEFMEVIKLEGVGHSPEDAIMPRDMFLLQLCSGMDENAVGTC 540 (814)
Q Consensus 461 ~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~~iLQe~~~~de~~~Gs~ 540 (814)
.+ .+.+-.+ +....|--...... ...-+-+||.++++-.. -++ +.
T Consensus 82 ~~-----------------------~~~i~~~----d~~~~i~y~~~~~~---~~~~vs~RDfV~~r~~~-~~~---~~- 126 (208)
T cd08868 82 LE-----------------------CKIIQVI----DDNTDISYQVAAEA---GGGLVSPRDFVSLRHWG-IRE---NC- 126 (208)
T ss_pred cc-----------------------eEEEEEe----cCCcEEEEEEecCc---CCCcccccceEEEEEEE-ecC---Ce-
Confidence 11 3444444 22223322222211 01124568888888743 332 32
Q ss_pred eEEEEeeccCC----CCCC--CCccCCceEEecCC
Q 048771 541 AELIFAPIDAS----FADD--APLLPSGFRIIPLD 569 (814)
Q Consensus 541 s~vVyAPvD~~----~~~~--v~LLPSGF~I~P~~ 569 (814)
-.++...|+-+ .+.. +..+++||.|-|++
T Consensus 127 ~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~ 161 (208)
T cd08868 127 YLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLP 161 (208)
T ss_pred EEEEEEeccCCCCCCCCCeEEEeccccEEEEEECC
Confidence 23344444432 1222 56788999999953
No 89
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=88.48 E-value=2.1 Score=48.75 Aligned_cols=94 Identities=20% Similarity=0.287 Sum_probs=68.2
Q ss_pred HHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccC-HHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEE
Q 048771 700 LKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETT-LVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICL 777 (814)
Q Consensus 700 ~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~-w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 777 (814)
++.+++ .|++|+..+.+ =.++|+|.++.+||+++ -+++++.+...-.. ....+...++..+.+.|....|...-.
T Consensus 254 ~~~l~e~~~d~I~v~D~~--G~I~~~N~a~~~l~G~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~ 330 (442)
T TIGR02040 254 LARLYHEAPDAIVFSDAD--GTIRGANEAFLELTDSSSLEAVRGRTLDRWLG-RGGVDLRVLLSNVRRTGQVRLYATTLT 330 (442)
T ss_pred HHHHHHhCCceEEEEcCC--CcEEehhHHHHHHhCCCChHHHcCCCHHHHhC-CCcccHHHHHHHHhhcCceEEEEEEEE
Confidence 444544 89999888764 47999999999999997 57899987542221 223345677788888998888887778
Q ss_pred cCCCCcEEEceeEEeEeecCC
Q 048771 778 SSMGRPVSYERAVAWKVLNEE 798 (814)
Q Consensus 778 ss~Grrf~i~~a~vW~l~d~~ 798 (814)
.+.|+.++++ +-...+.++
T Consensus 331 ~~~G~~~~ve--~s~~~i~~~ 349 (442)
T TIGR02040 331 GEFGAQTEVE--ISAAWVDQG 349 (442)
T ss_pred cCCCCEEEEE--EEEEEeccC
Confidence 9999999996 333444433
No 90
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=88.45 E-value=0.57 Score=38.63 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=29.8
Q ss_pred HHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCcc
Q 048771 699 ILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITL 744 (814)
Q Consensus 699 ~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lps 744 (814)
.++.+++ .|.+|+..+ .+ +++|+|+++.+||+++ ..+.+.
T Consensus 2 ~~~~l~~~~~~~i~i~d--~~-~i~~~N~~~~~l~g~~---~~~~~~ 42 (64)
T PF13188_consen 2 RYRSLFDNSPDGILIID--GG-RIIYVNPAFEELFGYS---LEGEDI 42 (64)
T ss_dssp HHHHHHCCSSSEEEEEE--TS-BEEEE-HHHHHHHCS----HTCCCH
T ss_pred HHHHHHHcCccceEEEE--CC-ChHHhhHHHHHHhCCC---CCCCCH
Confidence 4667776 799998888 33 9999999999999998 444444
No 91
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=86.49 E-value=5.9 Score=38.68 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=27.0
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhH
Q 048771 18 YVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCR 72 (814)
Q Consensus 18 r~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK 72 (814)
-.+||.+++..+- -.+|=++| -|++...|--|=|-||+-
T Consensus 21 ~d~lsDd~LvsmS-------------VReLNr~L---rG~~reEVvrlKQrRRTL 59 (135)
T KOG4196|consen 21 GDRLSDDELVSMS-------------VRELNRHL---RGLSREEVVRLKQRRRTL 59 (135)
T ss_pred CCCcCHHHHHHhh-------------HHHHHHHh---cCCCHHHHHHHHHHHHHH
Confidence 3688998887762 33444444 288888888888888764
No 92
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=86.30 E-value=12 Score=39.34 Aligned_cols=129 Identities=21% Similarity=0.361 Sum_probs=69.7
Q ss_pred CCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHhhhccchhccccchhh
Q 048771 386 EGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNIDVYS 465 (814)
Q Consensus 386 ~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLRd~R~eWd~l~~~~~s 465 (814)
.+|..+.. .+++.+..+|..+ + + .+=--++++=+ +.||..|+..+-+.|.+||.....
T Consensus 27 k~w~~~~~--~~~~e~~ykK~~d---~-~------------~lk~~r~~~ei-~~~p~~VL~~vl~~R~~WD~~~~~--- 84 (205)
T cd08909 27 KGWISCSS--SDNTELAYKKVGD---G-N------------PLRLWKVSVEV-EAPPSVVLNRVLRERHLWDEDFLQ--- 84 (205)
T ss_pred cCCcccCC--cCCeEEEEecCCC---C-C------------ceEEEEEEEEe-CCCHHHHHHHHHhhHhhHHhhcce---
Confidence 47777643 4778888887641 1 1 23445668888 677776655555579999964111
Q ss_pred HHhhhcCCCCCCCCCcCCccceEEecccccCCCCceEEEEEeecCCCCCCCCCCCCceEEEeeccCCCCCCCCceeEEEE
Q 048771 466 AAAIKVGPCSLPGSRVGTFGSQVILPLAHTIEHEEFMEVIKLEGVGHSPEDAIMPRDMFLLQLCSGMDENAVGTCAELIF 545 (814)
Q Consensus 466 ~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~~iLQe~~~~de~~~Gs~s~vVy 545 (814)
..++-.| +..+-|=-.+++... -+.+||..+++-. .+|+ ..|+|.++-+
T Consensus 85 --------------------~~~ie~l----d~~tdi~~y~~~~~~-----P~~~RD~v~~R~w-~~~~-~~G~~vi~~~ 133 (205)
T cd08909 85 --------------------WKVVETL----DKQTEVYQYVLNCMA-----PHPSRDFVVLRSW-RTDL-PKGACSLVSV 133 (205)
T ss_pred --------------------eEEEEEe----CCCcEEEEEEeecCC-----CCCCCEEEEEEEE-EEeC-CCCcEEEEEe
Confidence 1222222 111222223333221 2346788888874 3453 5787544444
Q ss_pred eeccCCC-C--CC--CCccCCceEEecC
Q 048771 546 APIDASF-A--DD--APLLPSGFRIIPL 568 (814)
Q Consensus 546 APvD~~~-~--~~--v~LLPSGF~I~P~ 568 (814)
+ |+-.. | .+ +.++=+||.|-|+
T Consensus 134 S-v~H~~~p~~g~VRa~~~~~gylI~P~ 160 (205)
T cd08909 134 S-VEHEEAPLLGGVRAVVLDSQYLIEPC 160 (205)
T ss_pred c-CCCCcCCCCCcEEEEEEcCcEEEEEC
Confidence 4 55432 1 12 3456678888883
No 93
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=85.38 E-value=15 Score=37.29 Aligned_cols=106 Identities=18% Similarity=0.224 Sum_probs=62.0
Q ss_pred eEEEEEEeccccCCChHH-HHHHHhh--hccchhccccchhhHHhhhcCCCCCCCCCcCCccceEEecccccCCCCceEE
Q 048771 427 AVLCAKASMLLQNVPPAI-LLRFLRE--HRSEWADNNIDVYSAAAIKVGPCSLPGSRVGTFGSQVILPLAHTIEHEEFME 503 (814)
Q Consensus 427 ~Vl~A~tS~wL~pvpp~~-lf~FLRd--~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vs 503 (814)
.+-..++...+ +.+++. +.++|.| .|.+||..... .+.+-.+. .++.|.
T Consensus 43 ~~~~~k~~~~v-~~~~~~~~~~~~~d~~~r~~Wd~~~~~-----------------------~~~ie~~~----~~~~i~ 94 (206)
T smart00234 43 PGEASRAVGVV-PMVCADLVEELMDDLRYRPEWDKNVAK-----------------------AETLEVID----NGTVIY 94 (206)
T ss_pred ceEEEEEEEEE-ecChHHHHHHHHhcccchhhCchhccc-----------------------EEEEEEEC----CCCeEE
Confidence 36778888888 678875 6678887 89999964111 23333332 223333
Q ss_pred EEEeecCCCCCCCCCCCCceEEEeeccCCCCCCCCceeEEE-EeeccCC----CCCC--CCccCCceEEecCC
Q 048771 504 VIKLEGVGHSPEDAIMPRDMFLLQLCSGMDENAVGTCAELI-FAPIDAS----FADD--APLLPSGFRIIPLD 569 (814)
Q Consensus 504 llr~~~~~~~~~~~~~~~~~~iLQe~~~~de~~~Gs~s~vV-yAPvD~~----~~~~--v~LLPSGF~I~P~~ 569 (814)
.......- .-+-+||..++..+. .+ ..|+ ++| ..-++-+ .+.. +.++++||.|-|++
T Consensus 95 ~~~~~~~~----~p~~~RDfv~~r~~~-~~--~~~~--~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~ 158 (206)
T smart00234 95 HYVSKFVA----GPVSPRDFVFVRYWR-EL--VDGS--YAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLG 158 (206)
T ss_pred EEEEeccc----CcCCCCeEEEEEEEE-Ec--CCCc--EEEEEEECCCCCCCCCCCceEEEEeceEEEEEECC
Confidence 33322211 135568999888754 34 2453 333 3345443 1222 35899999999954
No 94
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=84.97 E-value=31 Score=36.27 Aligned_cols=54 Identities=13% Similarity=0.314 Sum_probs=37.6
Q ss_pred CceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHhhhccchhcc
Q 048771 387 GWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADN 459 (814)
Q Consensus 387 ~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLRd~R~eWd~l 459 (814)
+|..++ ..+.|.++.+|.. ++ .-+.--++++-+ |.+|..|...|-|-|.+||..
T Consensus 28 ~w~~~~--~~~~~el~~~k~~---~g-------------s~l~~~r~~~~i-~a~~~~vl~~lld~~~~Wd~~ 81 (204)
T cd08908 28 GWVSYS--TSEQAELSYKKVS---EG-------------PPLRLWRTTIEV-PAAPEEILKRLLKEQHLWDVD 81 (204)
T ss_pred CCcccC--CCCcEEEEEeccC---CC-------------CCcEEEEEEEEe-CCCHHHHHHHHHhhHHHHHHH
Confidence 677764 3567889998753 12 236677788888 677777775555559999964
No 95
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=84.79 E-value=2.7 Score=44.75 Aligned_cols=57 Identities=30% Similarity=0.240 Sum_probs=31.4
Q ss_pred cccchhHHHhHH-----HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 66 FQNRRCREKQRK-----EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 66 FQNRRaK~Krrq-----e~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
-||-|-|.|.|. +-.+|..+|++|..+|+.|++.++.|-.+-++|+.+.+-++++|.
T Consensus 81 AQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~ 142 (292)
T KOG4005|consen 81 AQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELA 142 (292)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 355566555433 233455566666666666666666655555555555555555444
No 96
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=84.41 E-value=22 Score=37.16 Aligned_cols=71 Identities=10% Similarity=0.193 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhccCCCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHH
Q 048771 367 ALSQRLSRGFNEAVNGFTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILL 446 (814)
Q Consensus 367 kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf 446 (814)
+.++-=+..|..-+.. .++|..-. +..++|+|.+++..+ .| .+-+.-+-+ ++||+.||
T Consensus 8 ~~~~~~~~~~~~~l~~--~~~W~l~~-~~~~gi~V~s~~~~~----------------~~--~~fk~~~~v-~~~~~~l~ 65 (209)
T cd08906 8 RQGKEALAVVEQILAQ--EENWKFEK-NNDNGDTVYTLEVPF----------------HG--KTFILKAFM-QCPAELVY 65 (209)
T ss_pred HHHHHHHHHHHHHhhc--ccCCEEEE-ecCCCCEEEEeccCC----------------CC--cEEEEEEEE-cCCHHHHH
Confidence 3444444455544433 45898542 235788998866531 12 334777777 89999998
Q ss_pred H-HHhh--hccchhcc
Q 048771 447 R-FLRE--HRSEWADN 459 (814)
Q Consensus 447 ~-FLRd--~R~eWd~l 459 (814)
+ .|.| .|.+||..
T Consensus 66 ~~ll~D~~~~~~W~~~ 81 (209)
T cd08906 66 QEVILQPEKMVLWNKT 81 (209)
T ss_pred HHHHhChhhccccCcc
Confidence 5 5677 99999964
No 97
>smart00338 BRLZ basic region leucin zipper.
Probab=84.19 E-value=4 Score=34.72 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=23.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 89 LTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 89 l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
|..+...|..++..|..++.+|..|+..|++++.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445566667777777777777778888877653
No 98
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=83.46 E-value=16 Score=39.23 Aligned_cols=55 Identities=20% Similarity=0.452 Sum_probs=39.9
Q ss_pred CCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHhh--hccchhcc
Q 048771 383 FTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLRE--HRSEWADN 459 (814)
Q Consensus 383 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 459 (814)
...++|..-.. .++|+|.++... . +++-++=+-+ ++|++.||++|.| .|.+||..
T Consensus 56 ~~~~~W~l~~~--~~gI~Vyt~~~s------~-------------~~~fK~e~~v-d~s~e~v~~lL~D~~~r~~Wd~~ 112 (240)
T cd08913 56 VAKDNWVLSSE--KNQVRLYTLEED------K-------------FLSFKVEMVV-HVDAAQAFLLLSDLRRRPEWDKH 112 (240)
T ss_pred cccCCCEEEEc--cCCEEEEEEeCC------C-------------ccEEEEEEEE-cCCHHHHHHHHhChhhhhhhHhh
Confidence 45678986542 478999984431 0 1233555677 8999999999998 99999964
No 99
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=82.80 E-value=3.6 Score=44.70 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=62.8
Q ss_pred HHHHhcCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcC
Q 048771 700 LKNLWHHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSS 779 (814)
Q Consensus 700 ~~~L~~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss 779 (814)
.+.|-+.|.+|+..+. +-.++|.|++|.++|+++.+++.+.|..--..+.. .+.. .+.++.+.|-...+..+++..
T Consensus 10 ~~il~~~~~gi~~~d~--~~~i~~~N~a~~~~~g~~~~~~~g~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (348)
T PRK11073 10 GQILNSLINSILLLDD--DLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFS-LNIE-LMRESLQAGQGFTDNEVTLVI 85 (348)
T ss_pred HHHHhcCcCeEEEECC--CCeEeeEcHHHHHHhCCCHHHHcCCCHHHHcCcch-hhHH-HHHHHHHcCCcccccceEEEE
Confidence 3444568999888875 67999999999999999999999998765554322 2222 334555555444556788888
Q ss_pred CCCcEEEceeEEeEeec
Q 048771 780 MGRPVSYERAVAWKVLN 796 (814)
Q Consensus 780 ~Grrf~i~~a~vW~l~d 796 (814)
.|+.++++ +.+..+.
T Consensus 86 ~g~~~~~~--~~~~~~~ 100 (348)
T PRK11073 86 DGRSHILS--LTAQRLP 100 (348)
T ss_pred CCceEEEE--EEEEEcc
Confidence 99888763 3444444
No 100
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=82.39 E-value=7.7 Score=47.33 Aligned_cols=102 Identities=10% Similarity=0.016 Sum_probs=69.8
Q ss_pred CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccc-cCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCcE
Q 048771 706 HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKI-FDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPV 784 (814)
Q Consensus 706 ~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~s-ae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf 784 (814)
.|.+|+..+ .+-.++|.|+++.++|+++.+++.+.+...- ..+....+....+.+....+-.....-....+.|+.+
T Consensus 145 ~~~~i~~~d--~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 222 (799)
T PRK11359 145 LDRPVIVLD--PERRIVQCNRAFTEMFGYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRTGEKI 222 (799)
T ss_pred CCCcEEEEc--CCCcEEEEChhhHhhhCCCHHHHCCCChHHhcCCCCCcHHHHHHHHHhhccCCCCcceeEEeCCCCCEE
Confidence 566666554 4678999999999999999999998865432 2233334444455555555544433445567889888
Q ss_pred EEceeEEeEeecCCCceEEEEEeccC
Q 048771 785 SYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 785 ~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
++. ..+-.+.|++|...|...++.+
T Consensus 223 ~~~-~~~~~v~d~~g~~~~~~~~~~D 247 (799)
T PRK11359 223 WIK-ASISPVYDVLAHLQNLVMTFSD 247 (799)
T ss_pred EEE-eeeeeeecCCCceeEEEEEeeh
Confidence 874 4556678889998887777654
No 101
>PRK09776 putative diguanylate cyclase; Provisional
Probab=82.16 E-value=6.3 Score=49.91 Aligned_cols=109 Identities=12% Similarity=0.046 Sum_probs=75.1
Q ss_pred HHHHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccC-CCe
Q 048771 697 ESILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACL-QGG 774 (814)
Q Consensus 697 ~~~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~-y~G 774 (814)
++.++.+++ +|.+|+.++. |-.+.|.|+++.++++++-+|+.+.+...-..|.+++.....+.++...+.... ..-
T Consensus 282 e~r~~~l~e~~~~~i~~~d~--dG~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~e~ 359 (1092)
T PRK09776 282 ETRFRNAMEYSAIGMALVGT--EGQWLQVNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLLSGEINSYSMEK 359 (1092)
T ss_pred HHHHHHHHHhCCceEEEEcC--CCcEEehhHHHHHHhCCCHHHHccCCceeccCcchhHhHHHHHHHHHcCCccceeeee
Confidence 344566655 7888887765 679999999999999999999999988766666666666666666655443221 122
Q ss_pred eEEcCCCCcEEEceeEEeEeecCCCceEEEEEec
Q 048771 775 ICLSSMGRPVSYERAVAWKVLNEEETAHCICFMF 808 (814)
Q Consensus 775 vRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F 808 (814)
....+.|+.++++-... -+.|++|...|....+
T Consensus 360 ~~~~~dG~~~~~~~~~~-~~~~~~g~~~~~i~~~ 392 (1092)
T PRK09776 360 RYYRRDGEVVWALLAVS-LVRDTDGTPLYFIAQI 392 (1092)
T ss_pred EEEcCCCCEEEEEEEEE-EEECCCCCEeeehhhH
Confidence 34567888877654332 3457788877755443
No 102
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.04 E-value=4.5 Score=32.59 Aligned_cols=41 Identities=27% Similarity=0.224 Sum_probs=30.0
Q ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 82 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 82 l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
++..-+.|++.++.++.++++|.+|.+.|+.|...|+..++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455667888888888888888877777777777776654
No 103
>PRK10060 RNase II stability modulator; Provisional
Probab=80.86 E-value=8.6 Score=46.79 Aligned_cols=87 Identities=7% Similarity=-0.026 Sum_probs=61.8
Q ss_pred HHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCcc-ccccCcccHHHHhhhhHHHHHhccccCCCeeEE
Q 048771 700 LKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITL-EKIFDDHGRKALFAEFPQIMQQGFACLQGGICL 777 (814)
Q Consensus 700 ~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lps-r~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 777 (814)
++.++. ++.+|+..+.+ =.++|+|+++.++++|+-+++.+.+. .+-..+.+.+.-.+.+..+.+.|-.......-.
T Consensus 113 ~~~v~~~~~~gI~i~D~~--g~I~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 190 (663)
T PRK10060 113 AEQVVSEANSVIVILDSR--GNIQRFNRLCEEYTGLKEHDVIGQSVFKLFMSRREAAASRRNIRGFFRSGNAYEVERWIK 190 (663)
T ss_pred HHHHHhhCCceEEEEeCC--CCEEEEcHHHHHHHCcCHHHHcCCCHHHHhCChhhHHHHHHHHHHHHhcCCceEEEEEEE
Confidence 444444 77888777663 46999999999999999999999886 444455555555666777777775444344456
Q ss_pred cCCCCcEEEce
Q 048771 778 SSMGRPVSYER 788 (814)
Q Consensus 778 ss~Grrf~i~~ 788 (814)
.+.|+++++..
T Consensus 191 ~~~G~~~~~~~ 201 (663)
T PRK10060 191 TRKGQRLFLFR 201 (663)
T ss_pred eCCCCEEEEEe
Confidence 78888877643
No 104
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=79.94 E-value=10 Score=32.57 Aligned_cols=82 Identities=10% Similarity=-0.003 Sum_probs=56.9
Q ss_pred EcccHHHHHhhccCHHHhhcCc----cccccCcccHHHHhhhhHH-HHHhccccCCCeeEEcCCCCcEEEceeEEeEeec
Q 048771 722 TFANQAGLDMLETTLVALQDIT----LEKIFDDHGRKALFAEFPQ-IMQQGFACLQGGICLSSMGRPVSYERAVAWKVLN 796 (814)
Q Consensus 722 ~yaN~aaL~l~e~~w~el~~lp----sr~sae~~~r~er~~lL~~-v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~d 796 (814)
+|.|....+||+++-+++ +.+ +..-.-|.+|+.-...+.+ ..+.|-.....==.+.+.|+..+++. ..=-+.|
T Consensus 2 i~~s~~~~~i~G~~~~~~-~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~~G~~~wi~~-~~~~~~d 79 (91)
T PF08447_consen 2 IYWSDNFYEIFGYSPEEI-GKPDFEEWLERIHPDDRERVRQAIQQAALQNGEPFEIEYRIRRKDGEYRWIEV-RGRPIFD 79 (91)
T ss_dssp EEE-THHHHHHTS-HHHH-TCBEHHHHHHHB-TTTHHHHHHHHHHHHHHTT-EEEEEEEEEGTTSTEEEEEE-EEEEEET
T ss_pred EEEeHHHHHHhCCCHHHh-ccCCHHHHHhhcCHHHHHHHHHHHHHHhhccCcceEEEEEEECCCCCEEEEEE-EEEEEEC
Confidence 699999999999999999 777 5555578888888888888 56666444443334557888888854 5555568
Q ss_pred CCCceEEEE
Q 048771 797 EEETAHCIC 805 (814)
Q Consensus 797 ~~g~~~gqA 805 (814)
++|+..+..
T Consensus 80 ~~g~~~~~~ 88 (91)
T PF08447_consen 80 ENGKPIRII 88 (91)
T ss_dssp TTS-EEEEE
T ss_pred CCCCEEEEE
Confidence 999887654
No 105
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=79.63 E-value=23 Score=35.86 Aligned_cols=148 Identities=20% Similarity=0.315 Sum_probs=84.8
Q ss_pred HHHHHHHHHhhhccCCCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHH
Q 048771 368 LSQRLSRGFNEAVNGFTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLR 447 (814)
Q Consensus 368 LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~ 447 (814)
|+.+....|.. ......++|.........++. +++... + . +..+...++..-+ +.++..+|.
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~W~~~~~~~~~~~~--~~~~~~---~-~----------~~~~~~~k~~~~v-~~~~~~~~~ 63 (206)
T PF01852_consen 2 LAEELMQEELA-LAQEDEDGWKLYKDKKNGDVY--YKKVSP---S-D----------SCPIKMFKAEGVV-PASPEQVVE 63 (206)
T ss_dssp HHHHHHHHHHH-HHHHTCTTCEEEEEETTTCEE--EEEEEC---S-S----------STSCEEEEEEEEE-SSCHHHHHH
T ss_pred HHHHHHHHHHH-HhhcCCCCCeEeEccCCCeEE--EEEeCc---c-c----------cccceEEEEEEEE-cCChHHHHH
Confidence 45566666663 335678899988633333443 444321 1 0 1135667777888 788887777
Q ss_pred HHhhhccchhccccchhhHHhhhcCCCCCCCCCcCCccceEEecccccCCCCceEEEEEeecCCCCCCCCCCCCceEEEe
Q 048771 448 FLREHRSEWADNNIDVYSAAAIKVGPCSLPGSRVGTFGSQVILPLAHTIEHEEFMEVIKLEGVGHSPEDAIMPRDMFLLQ 527 (814)
Q Consensus 448 FLRd~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~~iLQ 527 (814)
.|.+.+.+||..... .+.+-.+ ++++.|.....+..- -..+.+||..+++
T Consensus 64 ~~~~~~~~Wd~~~~~-----------------------~~~le~~----~~~~~i~~~~~~~~~---~~p~~~RDfv~~~ 113 (206)
T PF01852_consen 64 DLLDDREQWDKMCVE-----------------------AEVLEQI----DEDTDIVYFVMKSPW---PGPVSPRDFVFLR 113 (206)
T ss_dssp HHHCGGGHHSTTEEE-----------------------EEEEEEE----ETTEEEEEEEEE-CT---TTTSSEEEEEEEE
T ss_pred HHHhhHhhcccchhh-----------------------heeeeec----CCCCeEEEEEecccC---CCCCCCcEEEEEE
Confidence 777643399975221 2333333 233455555444321 1136678999988
Q ss_pred eccCCCCCCCCceeEEEEeeccCCC-----CCC--CCccCCceEEec
Q 048771 528 LCSGMDENAVGTCAELIFAPIDASF-----ADD--APLLPSGFRIIP 567 (814)
Q Consensus 528 e~~~~de~~~Gs~s~vVyAPvD~~~-----~~~--v~LLPSGF~I~P 567 (814)
-.. .+ ..|+ -.+++..||-+. +.. +-+++|||.|-|
T Consensus 114 ~~~-~~--~~~~-~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~ 156 (206)
T PF01852_consen 114 SWR-KD--EDGT-YVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRP 156 (206)
T ss_dssp EEE-EC--TTSE-EEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEE
T ss_pred EEE-Ee--ccce-EEEEEeeeccccccccccCcceeeeeeEeEEEEE
Confidence 754 33 3443 355566777652 233 348999999999
No 106
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=79.13 E-value=25 Score=36.48 Aligned_cols=58 Identities=12% Similarity=0.341 Sum_probs=39.4
Q ss_pred CCCceeecCCCCc--ceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHhh--hccchhcc
Q 048771 385 DEGWTVMGNDGMD--DVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLRE--HRSEWADN 459 (814)
Q Consensus 385 ~~~W~~l~~~g~~--dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 459 (814)
+++|.......++ +|+|-.|+.. + .++.--++...+.++||+.|+++|.| .|.+||..
T Consensus 21 ~~~W~~~~~k~~~~~~i~vy~r~~~----~-------------s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~ 82 (209)
T cd08870 21 GQAWQQVMDKSTPDMSYQAWRRKPK----G-------------TGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDET 82 (209)
T ss_pred CCcceEhhhccCCCceEEEEecccC----C-------------CCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhh
Confidence 3789987643222 2666555432 1 12334566667767899999999998 99999974
No 107
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=78.60 E-value=3.4 Score=44.27 Aligned_cols=55 Identities=20% Similarity=0.348 Sum_probs=40.1
Q ss_pred CCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHhh--hccchhcc
Q 048771 383 FTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLRE--HRSEWADN 459 (814)
Q Consensus 383 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 459 (814)
-..++|..-. ..++|+|.++... .+++-+.=+-+ ++|++.||++|.| .|.+||..
T Consensus 52 ~~~~~W~l~~--~k~gIkVytr~~s-------------------~~l~fk~e~~v-d~s~~~v~dlL~D~~~R~~WD~~ 108 (235)
T cd08873 52 AAKSDWTVAS--STTSVTLYTLEQD-------------------GVLSFCVELKV-QTCASDAFDLLSDPFKRPEWDPH 108 (235)
T ss_pred cccCCCEEEE--cCCCEEEEEecCC-------------------CceEEEEEEEe-cCCHHHHHHHHhCcchhhhhhhc
Confidence 3468898653 3578999987631 23444444447 8999999999998 99999963
No 108
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=78.06 E-value=18 Score=38.69 Aligned_cols=163 Identities=15% Similarity=0.182 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCceeecCCCC-----cceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEecccc
Q 048771 364 ALRALSQRLSRGFNEAVNGFTDEGWTVMGNDGM-----DDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQ 438 (814)
Q Consensus 364 sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~g~-----~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~ 438 (814)
-++.||..-+..|- .+.-...--|.+..+.+. |....+..+.. +...++..+..+-++-..
T Consensus 3 ~~~~lA~~am~Ell-~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~------------~~~~~~~~~eASR~~glV- 68 (229)
T cd08875 3 GLLELAEEAMDELL-KLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHG------------GSKPGGFTTEASRACGLV- 68 (229)
T ss_pred HHHHHHHHHHHHHH-HHhccCCCCceecCCCCccccCHHHHhhcccCcC------------CCCCCCCeEEEEeeeEEE-
Confidence 58899999999998 455556778998765532 21111111111 111134567888899999
Q ss_pred CCChHHHHHHHhhhccchhccccchhhHHhhhcCCCCCCCCCcCCccceEEeccccc--CCCCceEEEEEeecCCCCCCC
Q 048771 439 NVPPAILLRFLREHRSEWADNNIDVYSAAAIKVGPCSLPGSRVGTFGSQVILPLAHT--IEHEEFMEVIKLEGVGHSPED 516 (814)
Q Consensus 439 pvpp~~lf~FLRd~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g--~~~~n~vsllr~~~~~~~~~~ 516 (814)
++.|..|.++|.|. .+|-.+....-+. ...+--|..| -..+..+.|+..+-+-++ -
T Consensus 69 ~m~~~~lVe~lmD~-~kW~~~Fp~iv~~-------------------a~tl~vistg~~g~~~G~lqlmyael~~pS--p 126 (229)
T cd08875 69 MMNAIKLVEILMDV-NKWSELFPGIVSK-------------------AKTLQVISTGNGGNRNGTLQLMYAELQVPS--P 126 (229)
T ss_pred ecCHHHHHHHHhCh-hhhhhhhhhhcce-------------------eeEEEEeeCCCCCCCCceehhhhhhcccCc--c
Confidence 89999999999992 2455431110110 1111112222 123456777776654333 3
Q ss_pred CCCCCceEEEeeccCCCCCCCCceeEEEE-eeccCC----CCCC---CCccCCceEEec
Q 048771 517 AIMPRDMFLLQLCSGMDENAVGTCAELIF-APIDAS----FADD---APLLPSGFRIIP 567 (814)
Q Consensus 517 ~~~~~~~~iLQe~~~~de~~~Gs~s~vVy-APvD~~----~~~~---v~LLPSGF~I~P 567 (814)
-+..|+...|.-|...+ .| ..+|. =.+|-. .+.. --.+||||-|-|
T Consensus 127 LVp~Re~~fLRyc~~l~---dG--~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~ 180 (229)
T cd08875 127 LVPTREFYFLRYCKQLE---DG--LWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQD 180 (229)
T ss_pred cccCCeEEEEEEEEEeC---CC--eEEEEEEeecccccCCCCCCccEEEEecCcEEEEE
Confidence 47789999999986444 45 34432 244432 1121 237999999988
No 109
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=74.71 E-value=2 Score=51.94 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=44.2
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 26 VEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 26 l~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
...|...|..|..|+...-..++.+. |++.+-||.||+++++....-+
T Consensus 568 ~sllkayyaln~~ps~eelskia~qv----glp~~vvk~wfE~~~a~e~sv~ 615 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQV----GLPFAVVKAWFEDEEAEEMSVE 615 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHh----cccHHHHHHHHHhhhhhhhhhc
Confidence 77899999999999999999999999 9999999999999998877633
No 110
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=74.46 E-value=48 Score=34.46 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=40.1
Q ss_pred CCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHhh--hccchhcc
Q 048771 384 TDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLRE--HRSEWADN 459 (814)
Q Consensus 384 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 459 (814)
-..+|..... .++|+|-.|...+ .++.--++...+.++|++.+|++|.| .|.+||..
T Consensus 19 ~~~~W~l~~~--~~~i~Vy~r~~~~-----------------s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~ 77 (207)
T cd08911 19 EPDGWEPFIE--KKDMLVWRREHPG-----------------TGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDAT 77 (207)
T ss_pred cCCCcEEEEE--cCceEEEEeccCC-----------------CCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhh
Confidence 4456987753 4679988776541 12233555454558999999999998 99999974
No 111
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=73.13 E-value=27 Score=40.15 Aligned_cols=107 Identities=11% Similarity=0.093 Sum_probs=68.8
Q ss_pred HHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEE
Q 048771 699 ILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICL 777 (814)
Q Consensus 699 ~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 777 (814)
..+.++. .+.+|+..+. +-.++|.|+++.++|+++.+++.+.+...-.++.. . ....+.++.+.|-.....-+++
T Consensus 263 ~~~~i~~~~~~~i~~~d~--~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 338 (607)
T PRK11360 263 LNELILESIADGVIAIDR--QGKITTMNPAAEVITGLQRHELVGKPYSELFPPNT-P-FASPLLDTLEHGTEHVDLEISF 338 (607)
T ss_pred HHHHHHHhccCeEEEEcC--CCCEEEECHHHHHHhCCChHHhcCCcHHHHcCCch-h-HHHHHHHHHhcCCCccceEEEE
Confidence 3444544 7888888885 55789999999999999999999988776665432 1 2234445555544333334444
Q ss_pred cCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 778 SSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 778 ss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
...+....+ ...+=.+.|++|...|...+|.+
T Consensus 339 ~~~~~~~~~-~~~~~~i~~~~g~~~~~i~~~~D 370 (607)
T PRK11360 339 PGRDRTIEL-SVSTSLLHNTHGEMIGALVIFSD 370 (607)
T ss_pred EcCCCcEEE-EEEEeeEEcCCCCEEEEEEEEee
Confidence 444333333 23334567889999888777754
No 112
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=72.91 E-value=9.2 Score=37.39 Aligned_cols=29 Identities=34% Similarity=0.407 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 94 KLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 94 ~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
+.|..++..|..|+++|+.||++++.|++
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~d 105 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELD 105 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556677777777777777777766
No 113
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=72.61 E-value=11 Score=31.10 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhHHHHhh
Q 048771 103 LQKQVSQLVYENGYFRQH 120 (814)
Q Consensus 103 l~~e~~~L~~EN~~Lr~e 120 (814)
++.++.+|..+|..|+++
T Consensus 30 le~~~~~L~~en~~L~~~ 47 (54)
T PF07716_consen 30 LEQEVQELEEENEQLRQE 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 114
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=72.54 E-value=7.8 Score=40.41 Aligned_cols=58 Identities=12% Similarity=0.321 Sum_probs=42.8
Q ss_pred CCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHhh--hccchhcc
Q 048771 383 FTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLRE--HRSEWADN 459 (814)
Q Consensus 383 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 459 (814)
-.+.+|..... .++|+|-.|... + ..+..-++...++.++|+.++++|.| .|.+||..
T Consensus 22 ~~~~~W~l~~~--~~~i~Vy~r~~~----~-------------s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~ 81 (207)
T cd08910 22 LDGAAWELLVE--SSGISIYRLLDE----Q-------------SGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQY 81 (207)
T ss_pred CCCCCeEEEEe--cCCeEEEEeccC----C-------------CCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHH
Confidence 34467988753 468999877653 1 13446677778855999999999998 99999974
No 115
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=72.00 E-value=8 Score=36.43 Aligned_cols=45 Identities=29% Similarity=0.357 Sum_probs=29.9
Q ss_pred ceeeccccc--hhHHHhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHH
Q 048771 61 QIKVWFQNR--RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQK 105 (814)
Q Consensus 61 QVkvWFQNR--RaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~ 105 (814)
+...||++. +.-.+.+++...+++++++++.+|..|+++.+.++.
T Consensus 16 ~y~l~~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 16 QYSLWFGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456788665 344445566666777777777777777777766654
No 116
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=71.28 E-value=3.6 Score=33.94 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=35.9
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccch
Q 048771 15 NGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRR 70 (814)
Q Consensus 15 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRR 70 (814)
+|+|..+|.+|-..+-..++..+ ...++|+++ |++..+|.-|..||.
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~f----gv~~sTv~~I~K~k~ 47 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREF----GVSRSTVSTILKNKD 47 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHH----T--CCHHHHHHHCHH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHh----CCCHHHHHHHHHhHH
Confidence 47788999999888888888776 688899999 999999999998853
No 117
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=70.98 E-value=8.4 Score=42.06 Aligned_cols=28 Identities=36% Similarity=0.330 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 94 KLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 94 ~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
..|..||+.|..++.+|+.|+..||+-+
T Consensus 225 ~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 225 AELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555544443
No 118
>PRK09776 putative diguanylate cyclase; Provisional
Probab=70.78 E-value=23 Score=45.01 Aligned_cols=107 Identities=12% Similarity=0.041 Sum_probs=68.7
Q ss_pred HHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCc---ccHHHHhhhhHHHHHhccc-c-CCC
Q 048771 700 LKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDD---HGRKALFAEFPQIMQQGFA-C-LQG 773 (814)
Q Consensus 700 ~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~---~~r~er~~lL~~v~~qG~~-~-~y~ 773 (814)
++.+.. .|++|+..+. +=.++|.|+++.++++++-+|+.+.|...-... ........ +.+....+-. + ...
T Consensus 538 l~~~l~~~~~~i~~~D~--~g~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 614 (1092)
T PRK09776 538 LHITLDSIGEAVVCTDM--AMKVTFMNPVAEKMTGWTQEEALGVPLLTVLHITFGDNGPLMEN-IYSCLTSRSAAYLEQD 614 (1092)
T ss_pred HHHHHhccccEEEEECC--CCeEEEEcHHHHHHhCCCHHHHcCCCHHHHcccccCCcchhhHH-HHHHHhcCCCccccce
Confidence 333433 6888888776 457999999999999999999999876543321 11122222 2232222211 1 112
Q ss_pred eeEEcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 774 GICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 774 GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
-....+.|++++++- .+-.+.|++|...|.-.++.+
T Consensus 615 ~~~~~~~G~~~~~~~-~~~pi~~~~g~~~g~v~~~~D 650 (1092)
T PRK09776 615 VVLHCRSGGSYDVHY-SITPLSTLDGENIGSVLVIQD 650 (1092)
T ss_pred EEEEeCCCcEEEEEE-EeeeeecCCCCEEEEEEEEEe
Confidence 234678899998864 566788999999887777654
No 119
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=70.41 E-value=7.9 Score=42.54 Aligned_cols=35 Identities=26% Similarity=0.101 Sum_probs=21.1
Q ss_pred HHHhhHHHHHHHHHH----HHHHHHHHHHhHHHHhhhcc
Q 048771 89 LTAMNKLLMEENDRL----QKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 89 l~~~n~~l~ee~~~l----~~e~~~L~~EN~~Lr~el~~ 123 (814)
+.+||+.|++++.++ +...++++.||++||+.|+-
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444455555444333 22233488999999998774
No 120
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=70.39 E-value=7.7 Score=41.67 Aligned_cols=55 Identities=18% Similarity=0.453 Sum_probs=43.5
Q ss_pred CCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHhh--hccchhcc
Q 048771 383 FTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLRE--HRSEWADN 459 (814)
Q Consensus 383 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 459 (814)
...++|..-. ..++|+|.++. + +.+++-+.-+-+ ++|++.+|++|.| .|.+||..
T Consensus 53 a~~~~W~l~~--dkdgIkVytr~--~-----------------s~~l~fk~e~~v-dvs~~~l~~LL~D~~~r~~Wd~~ 109 (236)
T cd08914 53 AAKSGWEVTS--TVEKIKIYTLE--E-----------------HDVLSVWVEKHV-KRPAHLAYRLLSDFTKRPLWDPH 109 (236)
T ss_pred cccCCCEEEE--ccCCEEEEEec--C-----------------CCcEEEEEEEEE-cCCHHHHHHHHhChhhhchhHHh
Confidence 4578998653 35789999874 1 125788888888 8999999999999 99999964
No 121
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=66.91 E-value=15 Score=39.67 Aligned_cols=36 Identities=28% Similarity=0.253 Sum_probs=23.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHH---HHHHHhHHHHhhhcc
Q 048771 88 KLTAMNKLLMEENDRLQKQVS---QLVYENGYFRQHTQS 123 (814)
Q Consensus 88 ~l~~~n~~l~ee~~~l~~e~~---~L~~EN~~Lr~el~~ 123 (814)
++.++|+.|++|+.+++.+.. +++.||++||+.|+-
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555555555555544444 578999999998764
No 122
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=66.17 E-value=25 Score=42.86 Aligned_cols=102 Identities=11% Similarity=-0.027 Sum_probs=66.4
Q ss_pred HHHHhcCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccC--C--Cee
Q 048771 700 LKNLWHHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACL--Q--GGI 775 (814)
Q Consensus 700 ~~~L~~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~--y--~Gv 775 (814)
..++-+.|.+|+..+. +-.++|.|+++.++|+++-+|+.+-|...-..+..+......+.++...|-... + .-.
T Consensus 15 ~~~le~~~~~i~~~d~--~g~i~~~N~~~~~l~G~s~eeliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 92 (799)
T PRK11359 15 FPALEQNMMGAVLINE--NDEVLFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQ 92 (799)
T ss_pred HHHHHhhcCcEEEEcC--CCeEEEEcHHHHHHhCCCHHHHcCCCHHHhcCccccccchHHHhhhhccCCccccccceeeE
Confidence 3455568888888775 568999999999999999999999877665555554444444444444432211 1 112
Q ss_pred EEcCCCCcEEEceeEEeEeecCCCceEEEE
Q 048771 776 CLSSMGRPVSYERAVAWKVLNEEETAHCIC 805 (814)
Q Consensus 776 Riss~Grrf~i~~a~vW~l~d~~g~~~gqA 805 (814)
...+.|+.++++-.. ..++.+|...+.+
T Consensus 93 ~~~~dG~~~~v~~~~--~~~~~~g~~~~~~ 120 (799)
T PRK11359 93 LEKKDGSKIWTRFAL--SKVSAEGKVYYLA 120 (799)
T ss_pred EecCCcCEEEEEEEe--eeeccCCceEEEE
Confidence 346788888876433 4456677765543
No 123
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=65.22 E-value=28 Score=30.83 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=15.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 89 LTAMNKLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 89 l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
|+.+++.+++++..+..+-..|+.||.+|+++.
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444555555555443
No 124
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=65.14 E-value=15 Score=40.55 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=22.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 87 RKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 87 ~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
+.+..+.+.+..+|++|..++++|..|.++||+=+
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666766544
No 125
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=64.93 E-value=23 Score=32.03 Aligned_cols=97 Identities=11% Similarity=-0.026 Sum_probs=62.5
Q ss_pred CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCcEE
Q 048771 706 HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPVS 785 (814)
Q Consensus 706 ~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~ 785 (814)
.|.+|+-.+. +=.+.|-|++|.++|... ...++-|-.--..+...+.-...+.++...+- ...-+.+...||.|.
T Consensus 8 ~~~~i~~vD~--~~~I~~~n~~a~~~f~~~-~~~iGr~l~~~~~~~~~~~l~~~i~~~~~~~~--~~~~~~~~~~~~~~~ 82 (106)
T PF13596_consen 8 MPIGIIFVDR--NLRIRYFNPAAARLFNLS-PSDIGRPLFDIHPPLSYPNLKKIIEQVRSGKE--EEFEIVIPNGGRWYL 82 (106)
T ss_dssp SSSEEEEEET--TSBEEEE-SCGC-SS----GGGTTSBCCCSS-HHHHHHHHHHHHHHHTTSB--SEEEEEEEETTEEEE
T ss_pred CCCCEEEEcC--CCeEEEeChhHhhhcCCC-hHHCCCCHHHcCCccchHHHHHHHHHHHcCCC--ceEEEEecCCCEEEE
Confidence 6788887776 568899999999999966 45567777665556666666777766664442 112333456676666
Q ss_pred EceeEEeEeecCCCceEEEEEeccC
Q 048771 786 YERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 786 i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
+ .+=-+.|++|++.|...+|.+
T Consensus 83 ~---~~~P~~~~~g~~~G~v~~~~D 104 (106)
T PF13596_consen 83 V---RYRPYRDEDGEYAGAVITFQD 104 (106)
T ss_dssp E---EEEEEE-TTS-EEEEEEEEEE
T ss_pred E---EEEEEECCCCCEEEEEEEEEe
Confidence 6 566678999999999999865
No 126
>smart00338 BRLZ basic region leucin zipper.
Probab=62.83 E-value=43 Score=28.37 Aligned_cols=45 Identities=31% Similarity=0.443 Sum_probs=34.0
Q ss_pred hhHHHhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 048771 70 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYEN 114 (814)
Q Consensus 70 RaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN 114 (814)
+++.|++.....++.+...|..+|..|..+...+..+...|+.++
T Consensus 19 ~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 19 RSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777777777777888888888888888888877777665
No 127
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=62.52 E-value=14 Score=38.56 Aligned_cols=56 Identities=18% Similarity=0.381 Sum_probs=40.7
Q ss_pred CCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHhh----hccchhcc
Q 048771 384 TDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLRE----HRSEWADN 459 (814)
Q Consensus 384 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLRd----~R~eWd~l 459 (814)
..++|.... + .++|+|.++++.. .+ |-+ -++-.-+ |++|+.||++|.| .|.+||..
T Consensus 20 ~~~~W~~~~-~-~~~i~v~~~~~~~--~~-------------~~~--~k~e~~i-~~s~~~~~~~l~d~~~~~r~~W~~~ 79 (208)
T cd08903 20 DESGWKTCR-R-TNEVAVSWRPSAE--FA-------------GNL--YKGEGIV-YATLEQVWDCLKPAAGGLRVKWDQN 79 (208)
T ss_pred cccCCEEEE-c-CCCEEEEeeecCC--CC-------------CcE--EEEEEEe-cCCHHHHHHHHHhccchhhhhhhhc
Confidence 567898875 3 3699999998752 11 222 4455566 8999999999984 68999964
No 128
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=61.71 E-value=35 Score=40.16 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=15.5
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHH
Q 048771 20 RYTPEQVEALERLYHECPKPSSIRRQQLI 48 (814)
Q Consensus 20 r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA 48 (814)
.+|++++..|.- +.-.|...-|--.+
T Consensus 41 ~ltpee~kalGi---egDTP~DTlrTlva 66 (472)
T TIGR03752 41 ELSPEELKALGI---EGDTPADTLRTLVA 66 (472)
T ss_pred cCCcchhHhcCC---CCCCccchHHHHHH
Confidence 678887777653 34556655555443
No 129
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=61.36 E-value=2.2e+02 Score=30.12 Aligned_cols=57 Identities=25% Similarity=0.378 Sum_probs=38.5
Q ss_pred CCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHhh--hccchhcc
Q 048771 383 FTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLRE--HRSEWADN 459 (814)
Q Consensus 383 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 459 (814)
-..++|..-... +||.|..++++. .+|.. ..-.| |+ +.-|+.|+||+.+ +|.+||..
T Consensus 20 ~~~~~Wkl~k~~--~~~~v~~k~~~e--f~gkl------~R~Eg-vv---------~~~~~ev~d~v~~~~~r~~Wd~~ 78 (202)
T cd08902 20 ILEEEWRVAKKS--KDVTVWRKPSEE--FGGYL------YKAQG-VV---------EDVYNRIVDHIRPGPYRLDWDSL 78 (202)
T ss_pred ccccCcEEEEeC--CCEEEEEecCCc--CCCce------EEEEE-Ee---------cCCHHHHHHHHhcccchhcccch
Confidence 367899876433 889999987752 23221 00112 22 5788999999998 89999964
No 130
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=60.95 E-value=32 Score=23.99 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=35.1
Q ss_pred CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHh
Q 048771 706 HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALF 757 (814)
Q Consensus 706 ~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~ 757 (814)
.+..++.++. +-.+.|.|..+.++++++..++.+.+......+..++.-.
T Consensus 10 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (67)
T smart00091 10 LPDGIFVLDL--DGRILYANPAAEELLGYSPEELIGKSLLELIHPEDREEVQ 59 (67)
T ss_pred CCceEEEEcC--CCeEEEECHHHHHHhCCCHHHHcCCcHHHhcCcccHHHHH
Confidence 5666666553 4467899999999999999998877665555555543333
No 131
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=59.24 E-value=21 Score=38.23 Aligned_cols=47 Identities=30% Similarity=0.367 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 76 RKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 76 rqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
-.++..|+.+|+.|++.|+.|..++.++..++..++.|.+.++++..
T Consensus 103 ~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 103 TEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 45778888899999999999999999988888888888888887654
No 132
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=58.65 E-value=34 Score=30.26 Aligned_cols=44 Identities=30% Similarity=0.354 Sum_probs=28.3
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 78 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 78 e~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
+...++.+++.|+.+|..+.+++..|..+.++|+.|....+..+
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777777777777777777777776655554443
No 133
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=58.47 E-value=49 Score=28.00 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=22.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 87 RKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 87 ~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
..|......|..++..|..++..|..++..|+.++
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555666666666677776677777776666654
No 134
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=58.26 E-value=36 Score=35.85 Aligned_cols=77 Identities=13% Similarity=0.035 Sum_probs=55.7
Q ss_pred ccccccCceeeEEEe-ecccCC-CcEEEEEeeccCCCCCCCCC-CCCCccceeecCcceEEeeCCC---CceEEEEEEee
Q 048771 237 LTTLAPARDFWLLRY-TSVLED-GSLVVCERSLKNIQNGPTMP-PVQHFVRAEMLPSGYLIRPCEG---GGSIIHIVDHM 310 (814)
Q Consensus 237 ~SpLvp~Re~~fLRy-ckq~~~-G~waVvDvSld~~~~~~~~~-~~~~~~r~~rlPSGclIq~~~n---G~skVtwVeH~ 310 (814)
|-| +..|||..+.. +...+. ..++|+..+++.. ..| ....++|.+ -=||..|+..|. +-..|+|+==.
T Consensus 101 P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~----~~p~~~~~~Vr~~-y~SgE~~~~~p~~~~~~~~vew~maT 174 (208)
T cd08864 101 PFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPP----LVESLYENAVLGR-YASVEKISYLPDADGKSNKVEWIMAT 174 (208)
T ss_pred CCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCC----cCCccCCCcEEEE-EEEEEEEEEcCccCCCcCCEEEEEEE
Confidence 666 99999999999 666652 5678999998743 122 234788888 679999998875 47899999833
Q ss_pred eccCC-CcCc
Q 048771 311 DLEPW-SVPE 319 (814)
Q Consensus 311 e~d~~-~v~~ 319 (814)
..|+. .||.
T Consensus 175 ~sDpGG~IP~ 184 (208)
T cd08864 175 RSDAGGNIPR 184 (208)
T ss_pred eeCCCCcCcH
Confidence 44455 4664
No 135
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.19 E-value=52 Score=29.12 Aligned_cols=42 Identities=26% Similarity=0.226 Sum_probs=27.9
Q ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 81 RLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 81 ~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
.++-+-+.|+.+|..+..+....+.....|+.||.+||+|..
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666666677788888887754
No 136
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=57.59 E-value=33 Score=30.96 Aligned_cols=44 Identities=25% Similarity=0.247 Sum_probs=28.9
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 79 ASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 79 ~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
...++-+-+.|+.+|..+.+++..+...-..|..||.+||+|..
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666655555667788888887754
No 137
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=56.18 E-value=2e+02 Score=30.05 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHH
Q 048771 365 LRALSQRLSRGFNEAVNGFTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAI 444 (814)
Q Consensus 365 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~ 444 (814)
-.++++.....|-.-. ...++|.... .+.++++|.++...+ .| ---+.-.-+ |+|++.
T Consensus 6 y~~~~~~~~~~~~~~~--~~~~~W~~~~-~~~~gi~v~s~~~~~----------------~~--k~~k~e~~i-~~~~~~ 63 (209)
T cd08905 6 YIKQGEEALQKSLSIL--QDQEGWKTEI-VAENGDKVLSKVVPD----------------IG--KVFRLEVVV-DQPLDN 63 (209)
T ss_pred HHHHHHHHHHHHHHHh--ccccCCEEEE-ecCCCCEEEEEEcCC----------------CC--cEEEEEEEe-cCCHHH
Confidence 3445555555555444 2456898763 235667888755431 12 334455667 899999
Q ss_pred HHHHHhh---hccchhcc
Q 048771 445 LLRFLRE---HRSEWADN 459 (814)
Q Consensus 445 lf~FLRd---~R~eWd~l 459 (814)
|+++|.+ .+.+|+..
T Consensus 64 l~~~l~~d~e~~~~W~~~ 81 (209)
T cd08905 64 LYSELVDRMEQMGEWNPN 81 (209)
T ss_pred HHHHHHhchhhhceeccc
Confidence 9977774 89999975
No 138
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=55.96 E-value=36 Score=36.37 Aligned_cols=63 Identities=17% Similarity=0.397 Sum_probs=45.2
Q ss_pred hccCCCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEE-EEEEeccccCCChHHHHHHHhh--hccc
Q 048771 379 AVNGFTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVL-CAKASMLLQNVPPAILLRFLRE--HRSE 455 (814)
Q Consensus 379 ~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl-~A~tS~wL~pvpp~~lf~FLRd--~R~e 455 (814)
+.-+-..++|..... .++|+|-.|...+ .|.++ .-++..-++.|+++.++++|.| .|.+
T Consensus 19 ~~~~~~~~~W~l~~~--~~gikVy~r~~~~----------------sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~ 80 (235)
T cd08872 19 ALEDVGADGWQLFAE--EGEMKVYRREVEE----------------DGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMD 80 (235)
T ss_pred HHccCCCCCCEEEEe--CCceEEEEEECCC----------------CCceeeeEEEEEEECCCCHHHHHHHHhChhhHHH
Confidence 444555668987753 4679998876641 12332 4677778856999999999998 9999
Q ss_pred hhcc
Q 048771 456 WADN 459 (814)
Q Consensus 456 Wd~l 459 (814)
||..
T Consensus 81 Wd~~ 84 (235)
T cd08872 81 WETT 84 (235)
T ss_pred HHhh
Confidence 9963
No 139
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=55.23 E-value=17 Score=42.90 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhccccc
Q 048771 94 KLLMEENDRLQKQVSQLVYENGYFRQHTQSTTL 126 (814)
Q Consensus 94 ~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~~~ 126 (814)
..|+..+..+.+|-++|+.||+-||++|.-+..
T Consensus 305 ~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 305 LGLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 345555567777778899999999999886543
No 140
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=55.20 E-value=37 Score=35.86 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=49.7
Q ss_pred HHHHh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEc
Q 048771 700 LKNLW-HHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLS 778 (814)
Q Consensus 700 ~~~L~-~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRis 778 (814)
++.++ +.|..|+-.+.+. ..+|+|+++.++|++++++..+.|...-..+. .+.++..++.....-- ...
T Consensus 8 l~~~~~~~~~~i~~~d~~g--~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~-------~~~~~l~~~~~~~~~~-~~~ 77 (333)
T TIGR02966 8 FRAAAQALPDAVVVLDEEG--QIEWCNPAAERLLGLRWPDDLGQRITNLIRHP-------EFVEYLAAGRFSEPLE-LPS 77 (333)
T ss_pred HHHHHHhCcCcEEEECCCC--cEEEEcHHHHHHhCCChHHHcCCcHHHHccCH-------HHHHHHHhcccCCCeE-eec
Confidence 44454 4888888888644 59999999999999999999987765544322 2344444544422222 222
Q ss_pred CCCCcEEEc
Q 048771 779 SMGRPVSYE 787 (814)
Q Consensus 779 s~Grrf~i~ 787 (814)
+.|..+++.
T Consensus 78 ~~~~~~~~~ 86 (333)
T TIGR02966 78 PINSERVLE 86 (333)
T ss_pred CCCCceEEE
Confidence 455555543
No 141
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=54.43 E-value=17 Score=40.53 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=16.0
Q ss_pred EEEEeeccCC----------CCCCCCccCCceEEecCC
Q 048771 542 ELIFAPIDAS----------FADDAPLLPSGFRIIPLD 569 (814)
Q Consensus 542 ~vVyAPvD~~----------~~~~v~LLPSGF~I~P~~ 569 (814)
++|.-||-.+ .+=+|-.=|-|.-|-|.+
T Consensus 337 ~~isg~v~~sit~l~~~~~l~~~~i~f~~~g~~v~~~g 374 (420)
T PF07407_consen 337 YFISGPVGPSITCLMKTYALYSVEIVFGEKGLYVRPTG 374 (420)
T ss_pred ceEeccccchHHHHHHHhhhheeEEEEcCCceEEeccC
Confidence 4555566554 244555566666666643
No 142
>PRK13560 hypothetical protein; Provisional
Probab=53.96 E-value=91 Score=37.81 Aligned_cols=107 Identities=11% Similarity=0.053 Sum_probs=61.5
Q ss_pred HHHHhc-CCCeEeecCCCCCceeEcc-cHHHHHhhccCHHHhhcCccccccCcccHHHH------------------hhh
Q 048771 700 LKNLWH-HTDAVMCCSLKALPVFTFA-NQAGLDMLETTLVALQDITLEKIFDDHGRKAL------------------FAE 759 (814)
Q Consensus 700 ~~~L~~-~p~avl~h~~~~dP~f~ya-N~aaL~l~e~~w~el~~lpsr~sae~~~r~er------------------~~l 759 (814)
++.++. .|.+|+..+. +-.++|. |.++.++|+++.+++.+.+..... +..+++. ...
T Consensus 334 l~~l~~~~~~~i~~~d~--~g~i~~~nn~~~~~~~G~~~~e~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (807)
T PRK13560 334 LRAIIEAAPIAAIGLDA--DGNICFVNNNAAERMLGWSAAEVMGKPLPGMD-PELNEEFWCGDFQEWYPDGRPMAFDACP 410 (807)
T ss_pred HHHHHHhCcccEEEEcC--CCCEEEecCHHHHHHhCCCHHHHcCCCccccC-hhhhhhhhhchhhhcCCcCCcchhhhhh
Confidence 344444 6777777665 4456665 677888999999999997753322 1111111 001
Q ss_pred hHHHHHhccccCCCeeE-EcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 760 FPQIMQQGFACLQGGIC-LSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 760 L~~v~~qG~~~~y~GvR-iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
+.+..++|-.....-++ ..+.|..+++. ..+-.+.|++|...|.-.++.+
T Consensus 411 ~~~~~~~~~~~~~~e~~~~~~~g~~~~~~-~~~~p~~d~~g~~~~~~~~~~D 461 (807)
T PRK13560 411 MAKTIKGGKIFDGQEVLIEREDDGPADCS-AYAEPLHDADGNIIGAIALLVD 461 (807)
T ss_pred HHHHHhcCCcccCceEEEEcCCCCeEEEE-EEEeeeECCCCCEEEEEEEeeh
Confidence 22334444432222233 34567766653 4555678999999887666543
No 143
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=53.49 E-value=28 Score=39.48 Aligned_cols=49 Identities=10% Similarity=0.038 Sum_probs=39.7
Q ss_pred HHHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCcccccc
Q 048771 698 SILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIF 748 (814)
Q Consensus 698 ~~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sa 748 (814)
..++.+++ .|++|+..+ ++-.+.|.|.+|.++|+++|++..+.+.....
T Consensus 98 ~~~~~~~~~~~~~i~~~d--~~g~i~~~N~~a~~l~g~~~~~~~g~~~~~~~ 147 (430)
T PRK11006 98 KRFRSGAESLPDAVVLTT--EEGNIFWCNGLAQQLLGFRWPEDNGQNILNLL 147 (430)
T ss_pred HHHHHHHHhCCCeEEEEc--CCCceeHHHHHHHHHhCCCChHhCCCcHHHHh
Confidence 44666665 799998887 46789999999999999999999888765443
No 144
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=53.41 E-value=38 Score=32.20 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=30.2
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhccccc
Q 048771 84 AVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTTL 126 (814)
Q Consensus 84 ~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~~~ 126 (814)
+.-..+..+-..|+.....+..|=..|++||+.||+.+.....
T Consensus 15 ~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 15 QQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333455556677777777777777888899999888876543
No 145
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=53.18 E-value=35 Score=37.70 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=32.3
Q ss_pred hhHHHhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 048771 70 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVY 112 (814)
Q Consensus 70 RaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~ 112 (814)
|-|.|||.+...+..+-..|.++|+.|++...++++|++.|+.
T Consensus 241 RYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 241 RYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666667777778888888888888888888877664
No 146
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=52.04 E-value=41 Score=32.23 Aligned_cols=41 Identities=17% Similarity=0.080 Sum_probs=30.3
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhccc
Q 048771 84 AVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQST 124 (814)
Q Consensus 84 ~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~ 124 (814)
+.-..+..+-..|+.....+.+|=..|++||..||+.+.+.
T Consensus 15 ~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 15 QNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555667777777777777788999999999888875
No 147
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=51.73 E-value=73 Score=34.01 Aligned_cols=91 Identities=21% Similarity=0.329 Sum_probs=64.1
Q ss_pred eechhHHHHHhcCCCC-------------------CCc-----eeeeccccccCceeeEEEeecccCCCcEEEEEeeccC
Q 048771 214 GLEPTRVAEILKDRPR-------------------GSA-----ILYALTTLAPARDFWLLRYTSVLEDGSLVVCERSLKN 269 (814)
Q Consensus 214 ~~~~~~LVe~lmD~~~-------------------~G~-----~M~a~SpLvp~Re~~fLRyckq~~~G~waVvDvSld~ 269 (814)
.+.|..+-++++|-+= .|+ .+..|.|+ -.||+-++|---+.++..-+||-.|+..
T Consensus 63 Dvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~tg~~vv~w~~kfP~p~-~~RdYV~~Rr~~~~~~k~~~i~s~~v~h 141 (219)
T KOG2761|consen 63 DVTPEIVRDVQWDDEYRKKWDDMVIELETIEEDPVTGTEVVYWVKKFPFPM-SNRDYVYVRRWWESDEKDYYIVSKSVQH 141 (219)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhhhheeeeecCCCCceEEEEEEeCCccc-CCccEEEEEEEEecCCceEEEEEecccC
Confidence 4578899999999772 366 23336554 5699999987777776777777777763
Q ss_pred CCCCCCCCCCCCccceeecCcceEEe-----eCCCC-ceEEEEEEe
Q 048771 270 IQNGPTMPPVQHFVRAEMLPSGYLIR-----PCEGG-GSIIHIVDH 309 (814)
Q Consensus 270 ~~~~~~~~~~~~~~r~~rlPSGclIq-----~~~nG-~skVtwVeH 309 (814)
+..|+...++|..-.=||.+|| +=++| .|.++|.+|
T Consensus 142 ----~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T KOG2761|consen 142 ----PSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHN 183 (219)
T ss_pred ----CCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEEC
Confidence 3445555678888999999999 54555 355556554
No 148
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=50.65 E-value=36 Score=40.40 Aligned_cols=44 Identities=32% Similarity=0.374 Sum_probs=30.0
Q ss_pred HhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 048771 74 KQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYF 117 (814)
Q Consensus 74 Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~L 117 (814)
|||+--..++..-.++.+||+.|+.||-.|..++..|..||.++
T Consensus 299 KKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~ 342 (655)
T KOG4343|consen 299 KKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRL 342 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccc
Confidence 33333444555556677788888888888888777777777765
No 149
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=49.70 E-value=60 Score=34.73 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=31.9
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcccc
Q 048771 78 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTT 125 (814)
Q Consensus 78 e~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~~ 125 (814)
.-..++.++..|..++..+..+.+..+.+++.|+.||.+|.+++.+..
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 344455556666666666666666667777778888888887777643
No 150
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.68 E-value=56 Score=26.40 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=19.6
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 048771 79 ASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVY 112 (814)
Q Consensus 79 ~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~ 112 (814)
...|+...+.|+++|+.+..|++.|..++..|..
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666555543
No 151
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=48.50 E-value=38 Score=37.08 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhcccc
Q 048771 94 KLLMEENDRLQKQVSQLVYENGYFRQHTQSTT 125 (814)
Q Consensus 94 ~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~~ 125 (814)
..+......|++|-+.|+.++.+|++|+..+.
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555555443
No 152
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=48.36 E-value=40 Score=39.43 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=31.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcccccc
Q 048771 89 LTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTTLA 127 (814)
Q Consensus 89 l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~~~~ 127 (814)
|.........+|.+|++++++|..+|..|-++|.+..+.
T Consensus 277 LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 277 LESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred HhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 444556667888899999999999999999999886543
No 153
>PRK10884 SH3 domain-containing protein; Provisional
Probab=47.84 E-value=61 Score=34.20 Aligned_cols=39 Identities=18% Similarity=0.020 Sum_probs=26.6
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 84 AVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 84 ~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
+....|+.+|+.+++++..++.+...|+.||..++++..
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334446777777777777777777777777777776554
No 154
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=47.37 E-value=1e+02 Score=38.23 Aligned_cols=97 Identities=16% Similarity=0.240 Sum_probs=55.5
Q ss_pred CCChHHHHHHHhh---hccchhccccchhhHHhhhcCCCCCCCCCcCCccceEEecccccCCCCceEEEEEeecCCCCCC
Q 048771 439 NVPPAILLRFLRE---HRSEWADNNIDVYSAAAIKVGPCSLPGSRVGTFGSQVILPLAHTIEHEEFMEVIKLEGVGHSPE 515 (814)
Q Consensus 439 pvpp~~lf~FLRd---~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~ 515 (814)
+.+|+.||++|-+ .|.|||.... . | +.+-+| +...+|.--++...-. -
T Consensus 236 ~aspE~Ifd~Vm~~~~~R~eWD~~~~---------~----------~----~vIE~I----D~htdI~Y~~~~~~~~--~ 286 (719)
T PLN00188 236 EATCEEIFELVMSMDGTRFEWDCSFQ---------Y----------G----SLVEEV----DGHTAILYHRLQLDWF--P 286 (719)
T ss_pred cCCHHHHHHHHhccCcccccchhccc---------c----------e----EEEEEe----cCCeEEEEEEeccccc--c
Confidence 7899999999974 9999996411 1 2 233333 3333444334321100 1
Q ss_pred CCCCCCceEEEeeccCCCCCCCCceeEEE-EeeccCCC----CCCC--CccCCceEEecCC
Q 048771 516 DAIMPRDMFLLQLCSGMDENAVGTCAELI-FAPIDASF----ADDA--PLLPSGFRIIPLD 569 (814)
Q Consensus 516 ~~~~~~~~~iLQe~~~~de~~~Gs~s~vV-yAPvD~~~----~~~v--~LLPSGF~I~P~~ 569 (814)
.-+-+||-.++.--. -+ -.| +|++ |-+|.-.. +.+| -+-|+||.|.|+.
T Consensus 287 ~~ispRDFV~~Rywr-r~--eDG--sYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~ 342 (719)
T PLN00188 287 MFVWPRDLCYVRYWR-RN--DDG--SYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLK 342 (719)
T ss_pred CccCcceeEEEEEEE-Ec--CCC--cEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECC
Confidence 125567888877632 33 245 4554 55565542 3333 3789999999963
No 155
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=46.43 E-value=27 Score=29.77 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=26.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 91 AMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 91 ~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
.+-+.+++.+.+|+.+..+|..||..||+...
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35678888889999999999999999998754
No 156
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=45.70 E-value=1e+02 Score=36.80 Aligned_cols=100 Identities=14% Similarity=0.190 Sum_probs=66.3
Q ss_pred HHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEc
Q 048771 700 LKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLS 778 (814)
Q Consensus 700 ~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRis 778 (814)
++++++ -|++|++.+.+. ..+|.|++|.++|+++=+++.+.|-.--.... .+.++.++|-.. .....+.
T Consensus 82 L~aIL~sm~eGVi~vD~~G--~I~~iN~aA~~Llg~~~eel~Gk~i~eli~~~-------~l~~~le~~~~~-~~~~~v~ 151 (520)
T PRK10820 82 LSALLEALPEPVLSIDMKG--KVELANPASCQLFGQSEEKLRNHTAAQLINGF-------NFLRWLESEPQD-SHNEHVV 151 (520)
T ss_pred HHHHHHhCCCcEEEECCCC--eeeHhHHHHHHHHCcCHHHHCCCcHHHHcCcc-------hHHHHHHcCCCc-cceEEEE
Confidence 455655 699999999866 58999999999999998888887765444322 244556666542 2235566
Q ss_pred CCCCcEEEceeEEeEeecCCCce--EEEEEeccC
Q 048771 779 SMGRPVSYERAVAWKVLNEEETA--HCICFMFIN 810 (814)
Q Consensus 779 s~Grrf~i~~a~vW~l~d~~g~~--~gqAa~F~~ 810 (814)
..|+.|.++-.-+. +.|++|.. .|.-.+|.+
T Consensus 152 ~~g~~~~v~~~PI~-~~d~~g~~~~~GaVivlrd 184 (520)
T PRK10820 152 INGQDFLMEITPVY-LQDENDQHVLVGAVVMLRS 184 (520)
T ss_pred ECCEEEEEEEEeee-ecCCCCceeEEEEEEEecc
Confidence 67887776443332 22666664 677666643
No 157
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=44.97 E-value=56 Score=33.32 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=15.7
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 84 AVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 84 ~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
.+|..++.++..+++.++.|+++...|..++..+++++
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433
No 158
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=42.02 E-value=98 Score=27.19 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=19.2
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 86 NRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 86 n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
+..|..+++...........+..+|+.|+..|++|++
T Consensus 28 ~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 28 NKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433333333344455567777777777665
No 159
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.31 E-value=71 Score=33.71 Aligned_cols=36 Identities=17% Similarity=0.084 Sum_probs=20.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhccc
Q 048771 89 LTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQST 124 (814)
Q Consensus 89 l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~ 124 (814)
.......|+++|++|.+|+..++.|+..|+.+++..
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444466666666666666666666666665543
No 160
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=40.20 E-value=50 Score=37.08 Aligned_cols=26 Identities=35% Similarity=0.287 Sum_probs=11.3
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHH
Q 048771 78 EASRLQAVNRKLTAMNKLLMEENDRL 103 (814)
Q Consensus 78 e~~~l~~~n~~l~~~n~~l~ee~~~l 103 (814)
+...|+++|++|++||+.|+.+.++|
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 161
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=40.10 E-value=78 Score=32.78 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=31.5
Q ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 77 KEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 77 qe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
+....|.+.|..|+...+..+.+|+.|..++..|..+-.++++++.
T Consensus 74 qR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 74 QRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777777777777777777766666666665
No 162
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.97 E-value=76 Score=37.53 Aligned_cols=46 Identities=13% Similarity=0.228 Sum_probs=33.7
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 78 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 78 e~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
+..+++.+-++++.+.+.+......++.+++.|..||++|+++++.
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555556666666666666777888888999999999999853
No 163
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=39.84 E-value=1e+02 Score=26.90 Aligned_cols=34 Identities=21% Similarity=0.127 Sum_probs=16.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 88 KLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 88 ~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
.|-..+..++.+|..|..++..+..|++.|.+..
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekn 44 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREERAQLLEKN 44 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555554443
No 164
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=38.01 E-value=1.1e+02 Score=32.06 Aligned_cols=32 Identities=34% Similarity=0.393 Sum_probs=18.6
Q ss_pred cchhHHHhHHHHHHHHHhhHHHHHhhHHHHHHH
Q 048771 68 NRRCREKQRKEASRLQAVNRKLTAMNKLLMEEN 100 (814)
Q Consensus 68 NRRaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~ 100 (814)
|||.+..- .+...|+..|.+|+.+|+.|++..
T Consensus 47 NrrlQ~hl-~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 47 NRRLQQHL-NEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555442 344556666666666666666554
No 165
>COG1415 Uncharacterized conserved protein [Function unknown]
Probab=37.62 E-value=1.3e+02 Score=34.35 Aligned_cols=125 Identities=18% Similarity=0.167 Sum_probs=82.4
Q ss_pred CCCCccCCCCCCCCHHHHHHHHHHH----------------------HHHHHHhCCCCCCCCCC--ChHHHHHHHhcCCC
Q 048771 653 NISSQAGLRTPLGTPEALTLARWIC----------------------HSYRCYLGVDLLKSSSE--GSESILKNLWHHTD 708 (814)
Q Consensus 653 ~~~~~~~~~~~~~~pe~~~l~~~i~----------------------~Sy~~~~G~~L~~~~~~--~~~~~~~~L~~~p~ 708 (814)
-|..|.|-.+||.-+.+..|+..|+ |||-..+|.+--.+.+. ..-.+-+.|+.-..
T Consensus 8 dLPLH~GhvP~wL~~rM~kLs~~i~elive~yG~~e~l~RlAdP~WFQsf~nviGmDW~SSGsTTv~~gaLK~~l~~~dl 87 (373)
T COG1415 8 DLPLHTGHVPPWLLPRMKKLSGAILELIVEEYGTDELLRRLADPFWFQSFNNVIGMDWDSSGSTTVTTGALKEALNPEDL 87 (373)
T ss_pred cccccCCCCChHHHHHHHHHHHHHHHHHHHHhCcHHHHHHhcCcHHHHHHhhhhcccccCCCCeeeeHHHHHHhcCcccC
Confidence 4566778889999999999888665 46666677776444322 11233346677778
Q ss_pred eEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHH----HHHhccccCCC-eeEEcCCCCc
Q 048771 709 AVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQ----IMQQGFACLQG-GICLSSMGRP 783 (814)
Q Consensus 709 avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~----v~~qG~~~~y~-GvRiss~Grr 783 (814)
-|..||+|.- .+.+ |-+|+..+--+.-+++.+=.+-.++.++ +.|+|| ++|- ++=+|.+|+-
T Consensus 88 gi~V~GGKG~-----------~~~~-tp~El~~~ae~~~ld~~~l~~~SRlvAKvDn~~lQDGy-dLYhH~~vvse~G~w 154 (373)
T COG1415 88 GIKVAGGKGR-----------NARK-TPDELESIAERFGLDAEKLVEASRLVAKVDNVLLQDGY-DLYHHTFVVSEDGRW 154 (373)
T ss_pred ceEEecCcch-----------hhcc-ChHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHhcch-hheeEEEEEcCCCCE
Confidence 8888888741 1222 2244555444555555555555555555 578999 6664 9999999999
Q ss_pred EEEceeE
Q 048771 784 VSYERAV 790 (814)
Q Consensus 784 f~i~~a~ 790 (814)
.-|.|+.
T Consensus 155 ~VIQQGM 161 (373)
T COG1415 155 AVIQQGM 161 (373)
T ss_pred EEEEcCc
Confidence 9998875
No 166
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=37.49 E-value=85 Score=32.36 Aligned_cols=140 Identities=16% Similarity=0.221 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhhhccCCCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHH
Q 048771 367 ALSQRLSRGFNEAVNGFTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILL 446 (814)
Q Consensus 367 kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf 446 (814)
++.|.|..-+.. .++|.... ..++|+|..++..+ -.+ -..++..-+ |.+|+.||
T Consensus 9 ~~~~~~~~~~~~------~~~W~~~~--~~~~i~v~~~~~~~---------------~~~--~~~k~~~~i-~~~~~~v~ 62 (206)
T cd08867 9 KLANEALQYIND------TDGWKVLK--TVKNITVSWKPSTE---------------FTG--HLYRAEGIV-DALPEKVI 62 (206)
T ss_pred HHHHHHHHHhcC------cCCcEEEE--cCCCcEEEEecCCC---------------CCC--EEEEEEEEE-cCCHHHHH
Confidence 444555554442 27899874 33689999875431 012 223666667 89999999
Q ss_pred HHHhh----hccchhccccchhhHHhhhcCCCCCCCCCcCCccceEEecccccCCCCceEEEEEeecCCCCCCCCCCCCc
Q 048771 447 RFLRE----HRSEWADNNIDVYSAAAIKVGPCSLPGSRVGTFGSQVILPLAHTIEHEEFMEVIKLEGVGHSPEDAIMPRD 522 (814)
Q Consensus 447 ~FLRd----~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~ 522 (814)
++|.| .|.+||.... +.+.+..| ++.+.| ++.....+. ..-+-+||
T Consensus 63 ~~l~d~~~~~r~~Wd~~~~-----------------------~~~~le~i----d~~~~i--~~~~~p~~~-~~~vs~RD 112 (206)
T cd08867 63 DVIIPPCGGLRLKWDKSLK-----------------------HYEVLEKI----SEDLCV--GRTITPSAA-MGLISPRD 112 (206)
T ss_pred HHHHhcCcccccccccccc-----------------------ceEEEEEe----CCCeEE--EEEEccccc-cCccCCcc
Confidence 99997 7999995311 14555555 233333 333211110 11356789
Q ss_pred eEEEeeccCCCCCCCCceeEEEEe-eccCC----CCCC--CCccCCceEEec
Q 048771 523 MFLLQLCSGMDENAVGTCAELIFA-PIDAS----FADD--APLLPSGFRIIP 567 (814)
Q Consensus 523 ~~iLQe~~~~de~~~Gs~s~vVyA-PvD~~----~~~~--v~LLPSGF~I~P 567 (814)
...+|-....+ .| ++++.. -|+-+ .+.+ ....++||.|-|
T Consensus 113 fV~~~~~~~~~---~~--~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p 159 (206)
T cd08867 113 FVDLVYVKRYE---DN--QWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSP 159 (206)
T ss_pred eEEEEEEEEeC---CC--eEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEE
Confidence 98888532233 23 354432 23222 2333 235678888877
No 167
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=37.43 E-value=1e+02 Score=35.77 Aligned_cols=46 Identities=20% Similarity=0.165 Sum_probs=39.6
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 78 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 78 e~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
..+.+.+++..++++.+.++..+...+.++.+|+.||.+|.+|.-+
T Consensus 28 ~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 28 AQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788899999999999999999999999999999998776
No 168
>PF15058 Speriolin_N: Speriolin N terminus
Probab=35.93 E-value=56 Score=34.20 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=27.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhccccc
Q 048771 88 KLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTTL 126 (814)
Q Consensus 88 ~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~~~ 126 (814)
-++.+.+.+..||++|+|++. |..||.+||.-|...+.
T Consensus 9 GlrhqierLv~ENeeLKKlVr-LirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 9 GLRHQIERLVRENEELKKLVR-LIRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhhc
Confidence 345566777788888888775 67788888887665544
No 169
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.66 E-value=74 Score=37.56 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=14.1
Q ss_pred HHHHHHHHhhHHHHHhhHHHHHHH
Q 048771 77 KEASRLQAVNRKLTAMNKLLMEEN 100 (814)
Q Consensus 77 qe~~~l~~~n~~l~~~n~~l~ee~ 100 (814)
++...+..+|+.|++||+.|++..
T Consensus 73 ~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 73 KRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555566666666666665533
No 170
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms]
Probab=35.56 E-value=3.1e+02 Score=24.22 Aligned_cols=79 Identities=13% Similarity=-0.028 Sum_probs=51.2
Q ss_pred HhcCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHH--HhhhhHHHHHhccccCCCeeEEcCC
Q 048771 703 LWHHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKA--LFAEFPQIMQQGFACLQGGICLSSM 780 (814)
Q Consensus 703 L~~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~e--r~~lL~~v~~qG~~~~y~GvRiss~ 780 (814)
+...+..++..+. +-.+.|.|+++.++++++-.+....+............ ...........+.........+...
T Consensus 118 ~~~~~~~~~~~d~--~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (232)
T COG2202 118 LEASPDGIWVLDE--DGRILYANPAAEELLGYSPEEELGRGLSDLIHPEDEERRELELARALAEGRGGPLEIEYRVRRKD 195 (232)
T ss_pred HhhCCceEEEEeC--CCCEEEeCHHHHHHhCCChHHhcCCChhheEecCCCchhhHHHHHHhhccCCCCcceEEEEEecC
Confidence 3446777777776 78899999999999999988888666555543333221 2222222333444455566667788
Q ss_pred CCc
Q 048771 781 GRP 783 (814)
Q Consensus 781 Grr 783 (814)
|++
T Consensus 196 g~~ 198 (232)
T COG2202 196 GER 198 (232)
T ss_pred CCE
Confidence 886
No 171
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=35.50 E-value=97 Score=33.65 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=32.9
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcccc
Q 048771 78 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTT 125 (814)
Q Consensus 78 e~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~~ 125 (814)
++.+.++.|..|..+.....+++..++.|+..|+..|-.|-+.+.=+.
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666666667777777777777777778888877776655443
No 172
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=35.49 E-value=2.5e+02 Score=23.03 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=13.0
Q ss_pred hhHHHhHHHHHHHHHhhHHHHHhhHHHHHH
Q 048771 70 RCREKQRKEASRLQAVNRKLTAMNKLLMEE 99 (814)
Q Consensus 70 RaK~Krrqe~~~l~~~n~~l~~~n~~l~ee 99 (814)
|+|.|+++....++.....|..+|..|..+
T Consensus 18 r~R~rkk~~~~~le~~~~~L~~en~~L~~~ 47 (54)
T PF07716_consen 18 RSRQRKKQREEELEQEVQELEEENEQLRQE 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333333
No 173
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=35.29 E-value=58 Score=27.27 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=22.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhccc
Q 048771 88 KLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQST 124 (814)
Q Consensus 88 ~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~ 124 (814)
+++++-+.=.-+......++.+|..||..||.+|.+.
T Consensus 12 klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 12 KLKAEREARSLDRSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433222233345666777888999999888764
No 174
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=34.99 E-value=1e+02 Score=34.82 Aligned_cols=61 Identities=26% Similarity=0.303 Sum_probs=37.6
Q ss_pred ccccchhHHHh--HHHHHHHHHhhHHHHHhhHH---HHHHHHHHHHHHHHHHHHhHHHHhhhcccc
Q 048771 65 WFQNRRCREKQ--RKEASRLQAVNRKLTAMNKL---LMEENDRLQKQVSQLVYENGYFRQHTQSTT 125 (814)
Q Consensus 65 WFQNRRaK~Kr--rqe~~~l~~~n~~l~~~n~~---l~ee~~~l~~e~~~L~~EN~~Lr~el~~~~ 125 (814)
||=-=|-|+|+ ......++..-.++...++- ++|..++.+.|.++|+..|++|+.||-++.
T Consensus 54 wff~i~~re~qlk~aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~ 119 (401)
T PF06785_consen 54 WFFAIGRREKQLKTAAGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVR 119 (401)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 77544444443 33444455555566555543 455556667777888888888888887654
No 175
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=34.92 E-value=95 Score=32.15 Aligned_cols=42 Identities=17% Similarity=-0.009 Sum_probs=20.8
Q ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 81 RLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 81 ~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
..+++-..|+.+-..|..+.++++++..+|.......++++.
T Consensus 103 ~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~el~ 144 (181)
T KOG3335|consen 103 KRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPESELK 144 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 333444445555555555555556655555543333344444
No 176
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=34.79 E-value=1.6e+02 Score=26.80 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=30.5
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhccc
Q 048771 79 ASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQST 124 (814)
Q Consensus 79 ~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~ 124 (814)
...+..+-..|+.....|....+..+.|-.+|+.||..|++-+..+
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555666666666777777778888888888776654
No 177
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=34.49 E-value=1.1e+02 Score=31.20 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=24.3
Q ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 77 KEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 77 qe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
+++..++.++.+|+.+++.|..+++++.++.+.+..+...|-+-++|
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555444444444443
No 178
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.26 E-value=64 Score=27.77 Aligned_cols=9 Identities=33% Similarity=0.630 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 048771 97 MEENDRLQK 105 (814)
Q Consensus 97 ~ee~~~l~~ 105 (814)
++++++++.
T Consensus 37 ~~e~~~L~~ 45 (80)
T PF04977_consen 37 KKENEELKE 45 (80)
T ss_pred HHHHHHHHH
Confidence 333333333
No 179
>PHA03155 hypothetical protein; Provisional
Probab=33.37 E-value=44 Score=32.16 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 100 NDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 100 ~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
.++|..|+++|+.||-.||+++.+
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467899999999999999999865
No 180
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=32.69 E-value=44 Score=32.43 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcccc
Q 048771 99 ENDRLQKQVSQLVYENGYFRQHTQSTT 125 (814)
Q Consensus 99 e~~~l~~e~~~L~~EN~~Lr~el~~~~ 125 (814)
.+++|..|+++|++||-.||+++.+-.
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 356789999999999999999998644
No 181
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=32.64 E-value=1.1e+02 Score=28.02 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=20.3
Q ss_pred ceEEeeCCCCceEEEEEEeeeccCC
Q 048771 291 GYLIRPCEGGGSIIHIVDHMDLEPW 315 (814)
Q Consensus 291 GclIq~~~nG~skVtwVeH~e~d~~ 315 (814)
-+-+.+.++|.|+|+|..+.+....
T Consensus 90 ~~~~~~~~~~~t~v~~~~~~~~~~~ 114 (140)
T cd07821 90 TIRVTPEGDGGTRVTWTAEFDPPEG 114 (140)
T ss_pred EEEEEECCCCccEEEEEEEEecCCC
Confidence 3567888888899999999887755
No 182
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=32.46 E-value=89 Score=34.49 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=24.4
Q ss_pred HHHhhHHHHHHHH---HHHHHHHHHHHHhHHHHhhhcccc
Q 048771 89 LTAMNKLLMEEND---RLQKQVSQLVYENGYFRQHTQSTT 125 (814)
Q Consensus 89 l~~~n~~l~ee~~---~l~~e~~~L~~EN~~Lr~el~~~~ 125 (814)
+..+|+.+++++. ++..++++|+.||.+||+.|.-..
T Consensus 71 ~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 71 LALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKE 110 (284)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4444555555543 345566789999999999987443
No 183
>PHA03162 hypothetical protein; Provisional
Probab=31.90 E-value=46 Score=32.79 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 100 NDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 100 ~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
+++|..|+++|++||-.||+++.+
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999865
No 184
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.44 E-value=1.2e+02 Score=31.77 Aligned_cols=43 Identities=28% Similarity=0.352 Sum_probs=24.0
Q ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 81 RLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 81 ~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
.++..+.+|.++++.+..++..|..+++.|..||..+..+.+.
T Consensus 78 ~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~ 120 (193)
T PF14662_consen 78 SLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDG 120 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 3444455555555555555555555566666666666555543
No 185
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=31.04 E-value=39 Score=27.31 Aligned_cols=38 Identities=32% Similarity=0.364 Sum_probs=13.4
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 84 AVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 84 ~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
..|..+...|..+.-....+++++.+|..||..||++.
T Consensus 7 ~qn~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 7 RQNRELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -----------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 34666777888888888999999999999999998764
No 186
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=30.04 E-value=80 Score=36.73 Aligned_cols=15 Identities=40% Similarity=0.920 Sum_probs=11.1
Q ss_pred eecc---ccchhHHHhHH
Q 048771 63 KVWF---QNRRCREKQRK 77 (814)
Q Consensus 63 kvWF---QNRRaK~Krrq 77 (814)
-.|| |||.+|.+-++
T Consensus 229 gcw~ay~Qnk~akehv~k 246 (575)
T KOG4403|consen 229 GCWFAYRQNKKAKEHVNK 246 (575)
T ss_pred hhhhhhhhhhHHHHHHHH
Confidence 4688 89888887544
No 187
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=29.46 E-value=1.3e+02 Score=28.22 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=33.0
Q ss_pred EEeeCCC-CceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHHH-HHH
Q 048771 293 LIRPCEG-GGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALR-QLR 344 (814)
Q Consensus 293 lIq~~~n-G~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~Lr-~~e 344 (814)
-+++.++ |+|.|+|--|++... .+|. ++++.-+-=+.+..+.+|| +||
T Consensus 94 ~~~~~~~~~~t~v~~~~~~~~~~-~~p~---~l~~~~~~~~~~~~l~~lr~~ae 143 (144)
T cd08866 94 RLEPLADGGGTLLTYEVEVKPDF-FAPV---FLVEFVLRQDLPTNLLAIRAEAE 143 (144)
T ss_pred EEEECCCCCeEEEEEEEEEEeCC-CCCH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678887 789999988887653 3443 6665444446777888885 665
No 188
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=29.34 E-value=2e+02 Score=27.19 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=46.1
Q ss_pred CcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHHHHHHHHhhHHHHHhhHHH
Q 048771 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLL 96 (814)
Q Consensus 17 kr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe~~~l~~~n~~l~~~n~~l 96 (814)
.+..|+..++..|.. ....+++ |++-.+|+-.+........ .......+-+....+.+
T Consensus 34 ~yR~Y~~~d~~~l~~-------------I~~lr~~----G~sl~eI~~~l~~~~~~~~-----~~~~~~~~~l~~~~~~l 91 (116)
T cd04769 34 NYRVYDAQHVECLRF-------------IKEARQL----GFTLAELKAIFAGHEGRAV-----LPWPHLQQALEDKKQEI 91 (116)
T ss_pred CceeeCHHHHHHHHH-------------HHHHHHc----CCCHHHHHHHHhccccCCc-----CcHHHHHHHHHHHHHHH
Confidence 567899999988853 2234667 8888888888876554320 01111122344444555
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHh
Q 048771 97 MEENDRLQKQVSQLVYENGYFRQ 119 (814)
Q Consensus 97 ~ee~~~l~~e~~~L~~EN~~Lr~ 119 (814)
.++..+++...+.|....+.+++
T Consensus 92 ~~~i~~l~~~~~~l~~~~~~~~~ 114 (116)
T cd04769 92 RAQITELQQLLARLDAFEASLKD 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555555555555544444443
No 189
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=29.18 E-value=16 Score=47.36 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=50.2
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 18 YVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 18 r~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
+++++.-|...|..+|+..++|.-.++..++.-| ++..|.+..|||++++++.+
T Consensus 448 s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L----~vhmRskhp~~~~~~c~~gq 501 (1406)
T KOG1146|consen 448 SKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTL----GVHMRSKHPESQSAYCKAGQ 501 (1406)
T ss_pred hhcccccceeeeecccccccCCccchhhhhHHHh----hhcccccccccchhHhHhcc
Confidence 5688889999999999999999999999999999 99999999999999998886
No 190
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=29.09 E-value=3.1e+02 Score=27.86 Aligned_cols=28 Identities=32% Similarity=0.267 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 94 KLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 94 ~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
+..+.+.+.+..++.+|..+|.+|...+
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555566666666666666665443
No 191
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=29.01 E-value=3.6e+02 Score=23.29 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048771 96 LMEENDRLQKQVSQLVYE 113 (814)
Q Consensus 96 l~ee~~~l~~e~~~L~~E 113 (814)
....|+.|..++..|+.+
T Consensus 37 aE~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 37 AEKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444433333
No 192
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=28.49 E-value=1.4e+02 Score=31.85 Aligned_cols=19 Identities=32% Similarity=0.200 Sum_probs=8.5
Q ss_pred HHhhHHHHHhhHHHHHHHH
Q 048771 83 QAVNRKLTAMNKLLMEEND 101 (814)
Q Consensus 83 ~~~n~~l~~~n~~l~ee~~ 101 (814)
+.++++++++.+.++++.+
T Consensus 150 ~~~~~~~~~~~~kL~~el~ 168 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELE 168 (216)
T ss_pred hhhHHHHHhhHHHHHHHHH
Confidence 3344444444444444443
No 193
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=28.26 E-value=50 Score=27.57 Aligned_cols=37 Identities=27% Similarity=0.291 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHhHhcC--CCCCHHHHHHHHHhcCcccCCCccc
Q 048771 21 YTPEQVEALERLYHEC--PKPSSIRRQQLIRECPILSNIEPKQ 61 (814)
Q Consensus 21 ~T~~Ql~~LE~~F~~~--~~Ps~~~R~~LA~~L~~~~gL~~rQ 61 (814)
+|+.|.+.|...|+.. .+|-...-.+||.+| |+++.-
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~l----gis~st 39 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEEL----GISKST 39 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHh----CCCHHH
Confidence 5899999999999987 447778889999999 998754
No 194
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=27.99 E-value=2.4e+02 Score=24.85 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=23.0
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 86 NRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 86 n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
+......++.|+.|.+....+++....+|..|++|++.
T Consensus 21 ~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~ 58 (69)
T PF14197_consen 21 NSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEA 58 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555566666666777777777654
No 195
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=27.87 E-value=1.2e+02 Score=28.05 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=25.3
Q ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhccccc
Q 048771 83 QAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTTL 126 (814)
Q Consensus 83 ~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~~~ 126 (814)
..+|..|+.+.+.|++..++- -++.+...||-+|++|+.+...
T Consensus 23 ~~e~~~L~eEI~~Lr~qve~n-Pevtr~A~EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 23 EEENEALKEEIQLLREQVEHN-PEVTRFAMENIRLREELRRLQS 65 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555444331 2345677888888888887654
No 196
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=27.73 E-value=1.2e+02 Score=26.70 Aligned_cols=22 Identities=18% Similarity=0.210 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhHHHHhhhc
Q 048771 101 DRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 101 ~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
.+++.+..+++.||..|+.|..
T Consensus 34 ~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 34 QKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 197
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.67 E-value=1.5e+02 Score=28.00 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=22.7
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 048771 78 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVY 112 (814)
Q Consensus 78 e~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~ 112 (814)
....++++-+.++.+++.++++|..|..|++.|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455556666666777777777777777766654
No 198
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.18 E-value=1.9e+02 Score=27.65 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=25.3
Q ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 82 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 82 l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
+......+......+.+++++++...+++..|...||+|+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444555666666666666666666666666667776664
No 199
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.17 E-value=1.8e+02 Score=33.05 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=19.5
Q ss_pred HhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 048771 74 KQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYE 113 (814)
Q Consensus 74 Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~E 113 (814)
|.+++-.++.++.+.+++..+.+++-..+|+.+++.|..+
T Consensus 222 r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq 261 (365)
T KOG2391|consen 222 RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQ 261 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHH
Confidence 3344455555555555555555555444444444333333
No 200
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=27.14 E-value=4.5e+02 Score=30.47 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 95 LLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 95 ~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
.++++.+.|.+|+.+.+-|.++|+.++.
T Consensus 353 aLrkerd~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 353 ALRKERDSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666655
No 201
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=26.24 E-value=2.2e+02 Score=26.11 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=35.8
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhccc
Q 048771 78 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQST 124 (814)
Q Consensus 78 e~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~ 124 (814)
+...+-+.-+.|....+.|.+.++.+..++++|...|.+.|.+++..
T Consensus 27 E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556667778889999999999999999998888887643
No 202
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=26.20 E-value=1.9e+02 Score=27.71 Aligned_cols=43 Identities=21% Similarity=0.102 Sum_probs=31.9
Q ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 81 RLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 81 ~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
.+++.--.+-++...|++...++-.|-..|+.||..||+.|..
T Consensus 12 ~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 12 NLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3444444566667777777777777778899999999998876
No 203
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=25.64 E-value=2.1e+02 Score=26.18 Aligned_cols=20 Identities=10% Similarity=0.275 Sum_probs=17.1
Q ss_pred eEEeeCCCCceEEEEEEeeec
Q 048771 292 YLIRPCEGGGSIIHIVDHMDL 312 (814)
Q Consensus 292 clIq~~~nG~skVtwVeH~e~ 312 (814)
+.+.+.++| |.|+|..|++.
T Consensus 89 ~~~~~~~~g-t~v~~~~~~~~ 108 (139)
T PF10604_consen 89 WRFEPVGDG-TRVTWTVEFEP 108 (139)
T ss_dssp EEEEEETTT-EEEEEEEEEEE
T ss_pred EEEEEcCCC-EEEEEEEEEEE
Confidence 457888877 99999999997
No 204
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=25.60 E-value=1.4e+02 Score=33.89 Aligned_cols=41 Identities=20% Similarity=0.063 Sum_probs=23.8
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 78 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 78 e~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
..-.++++|+.|+.+|..|+.++.++ ++++.||..|++.+.
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~~----e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKSY----EEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhc
Confidence 33455566666666666666555443 235577777775543
No 205
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=25.44 E-value=1.2e+02 Score=32.37 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 94 KLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 94 ~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
+.++...+.+..|-.+|..|+..|+++++
T Consensus 182 ~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 182 DALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 33344444444444555555666666554
No 206
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=25.44 E-value=1e+02 Score=31.69 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 80 SRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 80 ~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
.+++++...--.+|-.|.+|+ .|...|++|++|||+|+
T Consensus 3 eD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~ 40 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDEL 40 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH-------
T ss_pred HHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHH
No 207
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=25.33 E-value=2.7e+02 Score=24.43 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=29.3
Q ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 81 RLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 81 ~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
.+-.....|+.+|..++++...+..|-.+|...|+.-+..++
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667778888888888777777777777766665554
No 208
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=24.60 E-value=2.8e+02 Score=25.26 Aligned_cols=45 Identities=13% Similarity=0.226 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 048771 76 RKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQH 120 (814)
Q Consensus 76 rqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~e 120 (814)
+.+-..++..|..+..++..++.....|..+-++|+.|....++.
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqer 68 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777776666666666666666665444433
No 209
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.10 E-value=1.9e+02 Score=27.52 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=20.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcccc
Q 048771 89 LTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTT 125 (814)
Q Consensus 89 l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~~ 125 (814)
+...-..+-+++..|+.++..|..||+.|+-|.+.+.
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555556666666666666665555443
No 210
>PF00424 REV: REV protein (anti-repression trans-activator protein); InterPro: IPR000625 REV is a viral anti-repression trans-activator protein, which appears to act post-transcriptionally [] to relieve negative repression of GAG and ENV production. It is a phosphoprotein [, ] whose state of phosphorylation is mediated by a specific serine kinase activity present in the nucleus []. REV accumulates in the nucleoli [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 1ETF_B 1ETG_B 1ULL_B 3LPH_B 2X7L_R.
Probab=23.99 E-value=99 Score=28.75 Aligned_cols=36 Identities=36% Similarity=0.535 Sum_probs=20.3
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHHH
Q 048771 26 VEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 79 (814)
Q Consensus 26 l~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe~ 79 (814)
+....-.|+.+|||...--.+ ++ .|||.|||+++..
T Consensus 14 vRiIk~LyqsnPyP~~~GTr~-aR-----------------RnRRRRWR~rq~Q 49 (91)
T PF00424_consen 14 VRIIKILYQSNPYPSPEGTRQ-AR-----------------RNRRRRWRARQRQ 49 (91)
T ss_dssp HHHHHHHHHTS-S--S-S-HH-HH-----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHccccCCCCCCccc-cc-----------------cchhhhHHHHHHH
Confidence 344556699999998552222 22 4899999987654
No 211
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=23.98 E-value=3.7e+02 Score=29.88 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=14.4
Q ss_pred HHHHHHHHHhHHHHhhhccccc
Q 048771 105 KQVSQLVYENGYFRQHTQSTTL 126 (814)
Q Consensus 105 ~e~~~L~~EN~~Lr~el~~~~~ 126 (814)
+++..|..|..++|.||+|...
T Consensus 109 kqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 109 KQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666677777888877543
No 212
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=23.53 E-value=2.1e+02 Score=34.54 Aligned_cols=47 Identities=28% Similarity=0.287 Sum_probs=32.4
Q ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 77 KEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 77 qe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
++...|...+..|+.++..+++++++++.++.+.+.++..|+++.+.
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~ke 196 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKE 196 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777777777777777666666666665553
No 213
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.44 E-value=1.9e+02 Score=29.63 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=21.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 91 AMNKLLMEENDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 91 ~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
.+++...+|.+++++|+.+...|.+.||.|.+.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666777776666666677766654
No 214
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.82 E-value=1.4e+02 Score=32.44 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=34.6
Q ss_pred cccchhHHHhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH----HHhHHHHhhhccccc
Q 048771 66 FQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLV----YENGYFRQHTQSTTL 126 (814)
Q Consensus 66 FQNRRaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~----~EN~~Lr~el~~~~~ 126 (814)
|||.+.-.=++.+..++..++.+++++...|..|.+.+++.+...+ .-++.|.++++..+.
T Consensus 39 ~q~~k~~~~~~~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~ 103 (247)
T COG3879 39 FQTSKGESVRRARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRM 103 (247)
T ss_pred HhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 4444433333344445666666666666666666666666666555 334556666665543
No 215
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=22.81 E-value=1.9e+02 Score=32.77 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=24.0
Q ss_pred HHHHHHHHhhHHHHHhhHHH-------HHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 77 KEASRLQAVNRKLTAMNKLL-------MEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 77 qe~~~l~~~n~~l~~~n~~l-------~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
++-.+++..|.+|+++.-.. +.+..+|+.-+.+++.||++|+-+|+
T Consensus 99 ~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 99 QESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLD 151 (401)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34445555555555442221 22224555556677777777765555
No 216
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.76 E-value=2.1e+02 Score=29.31 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=23.7
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 84 AVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 84 ~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
.++++...+.+.++++.++.+.+...|+.+-+.+..|+
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455666666666666666666666666666666654
No 217
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=22.49 E-value=1.9e+02 Score=33.52 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=21.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcccc
Q 048771 89 LTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTT 125 (814)
Q Consensus 89 l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~~ 125 (814)
++.+++.+..+++.+..+..+++.|..++++|+.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555556666666666666543
No 218
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=22.25 E-value=50 Score=25.05 Aligned_cols=44 Identities=7% Similarity=0.085 Sum_probs=32.7
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchh
Q 048771 19 VRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRC 71 (814)
Q Consensus 19 ~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRa 71 (814)
..+++.+...++..|... ..-.++|.++ |++...|+.|...-+.
T Consensus 9 ~~l~~~~~~~~~~~~~~~-----~~~~~ia~~~----~~s~~~i~~~~~~~~~ 52 (55)
T cd06171 9 DKLPEREREVILLRFGEG-----LSYEEIAEIL----GISRSTVRQRLHRALK 52 (55)
T ss_pred HhCCHHHHHHHHHHHhcC-----CCHHHHHHHH----CcCHHHHHHHHHHHHH
Confidence 357888888888887533 2467778899 9999999888754433
No 219
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=22.19 E-value=4e+02 Score=30.67 Aligned_cols=91 Identities=10% Similarity=0.034 Sum_probs=54.6
Q ss_pred cCCCeEeecCCCCCceeEcccHHHHHhhccCHH---HhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCC
Q 048771 705 HHTDAVMCCSLKALPVFTFANQAGLDMLETTLV---ALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMG 781 (814)
Q Consensus 705 ~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~---el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~G 781 (814)
..+++|+.-+. +=..+|.|++|.++|+++-. +..+-+...- .....+.++.+.|-... ...+...|
T Consensus 229 ~~~~gIi~~D~--~g~I~~~N~~a~~llg~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~~g 297 (542)
T PRK11086 229 SIKEGVIAVDD--RGEVTLINDEAKRLFNYKKGLEDDPLGTDVESW-------MPVSRLKEVLRTGTPRR--DEEINING 297 (542)
T ss_pred HhcCcEEEECC--CCeEEEEhHHHHHHhCCCcCCcccccCCcHHHh-------CCchhHHHHHhcCCCcc--ceEEEECC
Confidence 46888888775 56789999999999966521 2222111111 11234556666664432 23444567
Q ss_pred CcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 782 RPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 782 rrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
+.+.+... .+.| +|...|.-.+|.+
T Consensus 298 ~~~~~~~~---pi~~-~g~~~g~v~~~rD 322 (542)
T PRK11086 298 RLLLTNTV---PVRV-NGEIIGAIATFRD 322 (542)
T ss_pred EEEEEEEE---EEeE-CCEEEEEEEEEEE
Confidence 77766543 3445 7888888877754
No 220
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=22.09 E-value=1.4e+02 Score=26.94 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhh
Q 048771 95 LLMEENDRLQKQVSQLVYENGYFRQH 120 (814)
Q Consensus 95 ~l~ee~~~l~~e~~~L~~EN~~Lr~e 120 (814)
.|.++|.+|+.+++.|..|.+.++.+
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555555555555555
No 221
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=22.05 E-value=65 Score=29.83 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhHHHHhhh
Q 048771 103 LQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 103 l~~e~~~L~~EN~~Lr~el 121 (814)
+..++.+++.|+..||+|+
T Consensus 81 ~~~~~~~~~~~~~~l~~~~ 99 (99)
T cd04765 81 AEERLPSIRAELLDLRDQL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 5667788899999999875
No 222
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=22.04 E-value=1.5e+02 Score=27.32 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=18.6
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 86 NRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 86 n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
|++|.++|+.++.|..--+ -..+|++.|+..+.
T Consensus 32 ~~kL~~en~qlk~Ek~~~~-----~qvkn~~vrqknee 64 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAE-----TQVKNAKVRQKNEE 64 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHH
Confidence 5566666666665544333 33466666666553
No 223
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=22.00 E-value=2.3e+02 Score=32.75 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=32.4
Q ss_pred HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 048771 80 SRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQH 120 (814)
Q Consensus 80 ~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~e 120 (814)
..++.++..+..+++.+.++..++.+++.+++.|+.+|+.-
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (398)
T PTZ00454 25 KELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSV 65 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33456677788888888888888888888899988888654
No 224
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.92 E-value=3.3e+02 Score=24.33 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=24.7
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 048771 78 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQ 119 (814)
Q Consensus 78 e~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~ 119 (814)
+-..++.+|..|..+-.......+.|+.+-++|+.|....++
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQe 67 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQE 67 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666666666544433
No 225
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=21.90 E-value=1.6e+02 Score=26.76 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhcccc
Q 048771 95 LLMEENDRLQKQVSQLVYENGYFRQHTQSTT 125 (814)
Q Consensus 95 ~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~~ 125 (814)
.+..+..+++++..+|..||.+|+-|..+.+
T Consensus 39 ~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455566666666666666666655543
No 226
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.89 E-value=2.4e+02 Score=28.32 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=16.4
Q ss_pred CCCcccCCHHHHHHHHHhHhcC
Q 048771 15 NGKYVRYTPEQVEALERLYHEC 36 (814)
Q Consensus 15 ~rkr~r~T~~Ql~~LE~~F~~~ 36 (814)
...+..+|+||...++..+++-
T Consensus 38 ~~~~~~LT~EQQa~~q~I~~~f 59 (143)
T PRK11546 38 QQNAAPLTTEQQAAWQKIHNDF 59 (143)
T ss_pred ccccccCCHHHHHHHHHHHHHH
Confidence 3456679999999998776654
No 227
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.93 E-value=2.8e+02 Score=29.78 Aligned_cols=47 Identities=26% Similarity=0.217 Sum_probs=27.1
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhccc
Q 048771 78 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQST 124 (814)
Q Consensus 78 e~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~ 124 (814)
+...+..+...+..+.+.++..++++++.+..++.+.+.|+++++.+
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555566666666666666666666666544
No 228
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=20.50 E-value=2.5e+02 Score=26.39 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=34.2
Q ss_pred ceEEeeCCCCceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHH-HHHHh
Q 048771 291 GYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAAL-RQLRQ 345 (814)
Q Consensus 291 GclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~L-r~~e~ 345 (814)
-..+++.++|.|.|++.-|++..- .++.+|++.-+.=..+..+.++ +.|++
T Consensus 86 ~w~~~p~~~~~T~v~~~~~~~~~~----~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 86 EWRFKPLGENACKVEFDLEFEFKS----RLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred EEEEEECCCCCEEEEEEEEEEECC----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455788999999999999999862 2444555333333566667777 36654
No 229
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.30 E-value=3.2e+02 Score=26.04 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=11.8
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHH
Q 048771 86 NRKLTAMNKLLMEENDRLQKQVSQL 110 (814)
Q Consensus 86 n~~l~~~n~~l~ee~~~l~~e~~~L 110 (814)
|.+...+.+.+.+..+.+..+..+.
T Consensus 75 nl~ae~ei~~l~~~l~~l~~~~~~~ 99 (108)
T PF06210_consen 75 NLKAEQEIERLHRKLDALREKLGEL 99 (108)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhHHH
Confidence 4444444555555555544444333
No 230
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=20.21 E-value=1.8e+02 Score=27.89 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=23.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 048771 89 LTAMNKLLMEENDRLQKQVSQLVYENGYFRQ 119 (814)
Q Consensus 89 l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~ 119 (814)
.+.|-+.|++.+.+|+....+|+.||.-||.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677778888888878888888887773
No 231
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=20.14 E-value=3.2e+02 Score=28.35 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhHHHHhhhcc
Q 048771 103 LQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 103 l~~e~~~L~~EN~~Lr~el~~ 123 (814)
...|++.|+.+|.+|+++|++
T Consensus 168 ~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 168 HQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344555666667777777654
Done!