Query 048771
Match_columns 814
No_of_seqs 387 out of 1579
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 22:52:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.7 8.9E-17 3.1E-21 164.8 21.0 180 154-346 20-229 (231)
2 2cue_A Paired box protein PAX6 99.6 3E-16 1E-20 137.1 6.8 67 9-79 2-68 (80)
3 2cra_A Homeobox protein HOX-B1 99.6 1.4E-16 4.7E-21 135.7 3.7 65 9-77 2-66 (70)
4 2dmu_A Homeobox protein goosec 99.6 2.5E-16 8.4E-21 134.1 4.6 65 9-77 2-66 (70)
5 2da2_A Alpha-fetoprotein enhan 99.6 2.2E-16 7.4E-21 134.3 4.0 65 9-77 2-66 (70)
6 2e1o_A Homeobox protein PRH; D 99.6 3.4E-16 1.2E-20 133.3 5.2 64 10-77 3-66 (70)
7 2dms_A Homeobox protein OTX2; 99.6 4.2E-16 1.4E-20 136.1 5.0 64 10-77 3-66 (80)
8 2dmq_A LIM/homeobox protein LH 99.6 5.6E-16 1.9E-20 135.1 5.8 64 10-77 3-66 (80)
9 1nk2_P Homeobox protein VND; h 99.6 6.2E-16 2.1E-20 134.1 6.0 66 9-78 4-69 (77)
10 2h1k_A IPF-1, pancreatic and d 99.6 3.2E-16 1.1E-20 130.8 3.7 61 13-77 2-62 (63)
11 2vi6_A Homeobox protein nanog; 99.6 2.1E-16 7.2E-21 131.4 2.4 61 13-77 2-62 (62)
12 2djn_A Homeobox protein DLX-5; 99.6 3.8E-16 1.3E-20 133.0 4.0 65 9-77 2-66 (70)
13 2da1_A Alpha-fetoprotein enhan 99.6 3.3E-16 1.1E-20 133.2 3.4 64 10-77 3-66 (70)
14 2dmt_A Homeobox protein BARH-l 99.6 5E-16 1.7E-20 135.7 4.6 64 10-77 13-76 (80)
15 2da3_A Alpha-fetoprotein enhan 99.6 4.1E-16 1.4E-20 135.7 3.3 63 11-77 14-76 (80)
16 3a01_A Homeodomain-containing 99.6 7.1E-16 2.4E-20 138.7 4.5 64 11-78 14-77 (93)
17 1ig7_A Homeotic protein MSX-1; 99.6 9.7E-16 3.3E-20 125.5 4.4 57 15-75 1-57 (58)
18 2hdd_A Protein (engrailed home 99.6 7E-16 2.4E-20 127.9 3.4 58 14-75 3-60 (61)
19 1wh5_A ZF-HD homeobox family p 99.6 7.5E-16 2.6E-20 135.0 3.6 60 12-75 15-78 (80)
20 2kt0_A Nanog, homeobox protein 99.6 8.7E-16 3E-20 135.1 3.8 64 10-77 18-81 (84)
21 2da5_A Zinc fingers and homeob 99.6 1.1E-15 3.6E-20 132.2 4.2 62 12-77 5-66 (75)
22 1ahd_P Antennapedia protein mu 99.6 1E-15 3.4E-20 129.9 3.4 60 14-77 2-61 (68)
23 1puf_A HOX-1.7, homeobox prote 99.6 2.3E-15 7.7E-20 130.6 5.7 63 11-77 10-72 (77)
24 1yz8_P Pituitary homeobox 2; D 99.6 7.6E-16 2.6E-20 130.4 2.6 62 13-78 2-63 (68)
25 2da4_A Hypothetical protein DK 99.6 9.2E-16 3.2E-20 133.9 3.2 65 9-77 3-71 (80)
26 1b8i_A Ultrabithorax, protein 99.6 1E-15 3.5E-20 134.1 3.3 63 11-77 17-79 (81)
27 2l7z_A Homeobox protein HOX-A1 99.6 1.9E-15 6.4E-20 129.9 4.7 61 12-76 5-65 (73)
28 1fjl_A Paired protein; DNA-bin 99.5 2.4E-15 8.1E-20 131.6 5.0 63 11-77 15-77 (81)
29 1jgg_A Segmentation protein EV 99.5 1.6E-15 5.3E-20 125.4 3.6 58 15-76 2-59 (60)
30 1bw5_A ISL-1HD, insulin gene e 99.5 1E-15 3.5E-20 128.8 2.4 60 14-77 3-62 (66)
31 1ftt_A TTF-1 HD, thyroid trans 99.5 1.8E-15 6.2E-20 128.2 3.9 60 14-77 2-61 (68)
32 1zq3_P PRD-4, homeotic bicoid 99.5 2.6E-15 9E-20 127.2 4.7 60 14-77 2-61 (68)
33 1uhs_A HOP, homeodomain only p 99.5 2.5E-15 8.6E-20 128.6 4.6 59 15-77 2-61 (72)
34 3a02_A Homeobox protein arista 99.5 1.4E-15 4.9E-20 125.6 2.8 57 17-77 2-58 (60)
35 1wh7_A ZF-HD homeobox family p 99.5 1.6E-15 5.3E-20 133.1 3.1 60 11-75 14-78 (80)
36 2m0c_A Homeobox protein arista 99.5 2.3E-15 7.9E-20 129.3 3.9 63 11-77 6-68 (75)
37 2hi3_A Homeodomain-only protei 99.5 3.1E-15 1.1E-19 128.4 4.5 60 14-77 2-62 (73)
38 2r5y_A Homeotic protein sex co 99.5 2.2E-15 7.7E-20 133.8 3.7 63 11-77 25-87 (88)
39 3rkq_A Homeobox protein NKX-2. 99.5 2.7E-15 9.2E-20 122.4 3.7 56 15-74 3-58 (58)
40 2ecc_A Homeobox and leucine zi 99.5 3.6E-15 1.2E-19 129.4 4.4 57 16-76 5-61 (76)
41 2dn0_A Zinc fingers and homeob 99.5 2.1E-15 7.3E-20 130.4 2.9 62 12-77 6-67 (76)
42 2k40_A Homeobox expressed in E 99.5 2.7E-15 9.4E-20 126.5 3.4 59 15-77 2-60 (67)
43 3a03_A T-cell leukemia homeobo 99.5 3E-15 1E-19 122.2 3.4 54 19-76 2-55 (56)
44 1akh_A Protein (mating-type pr 99.5 2.3E-15 8E-20 124.5 2.5 59 12-74 3-61 (61)
45 2cuf_A FLJ21616 protein; homeo 99.5 4.8E-15 1.6E-19 133.6 4.6 65 10-78 3-82 (95)
46 2ecb_A Zinc fingers and homeob 99.5 6.4E-15 2.2E-19 131.6 4.7 62 13-78 10-71 (89)
47 1x2n_A Homeobox protein pknox1 99.5 8.9E-15 3.1E-19 125.4 5.0 64 10-77 3-69 (73)
48 2ly9_A Zinc fingers and homeob 99.5 5.1E-15 1.7E-19 127.2 3.4 60 14-77 6-65 (74)
49 1b72_A Protein (homeobox prote 99.5 6.1E-15 2.1E-19 133.4 4.1 62 12-77 32-93 (97)
50 3nar_A ZHX1, zinc fingers and 99.5 5.9E-15 2E-19 133.3 3.2 62 12-77 23-84 (96)
51 1du6_A PBX1, homeobox protein 99.5 8.8E-15 3E-19 122.3 1.9 58 14-75 3-63 (64)
52 2cqx_A LAG1 longevity assuranc 99.5 8.7E-15 3E-19 125.8 1.8 59 14-76 8-67 (72)
53 1k61_A Mating-type protein alp 99.5 1.7E-14 5.8E-19 119.0 3.4 55 17-75 1-58 (60)
54 1puf_B PRE-B-cell leukemia tra 99.5 1.6E-14 5.6E-19 123.8 3.0 59 15-77 2-63 (73)
55 2dmp_A Zinc fingers and homeob 99.5 3.4E-14 1.2E-18 126.8 4.9 60 14-77 13-72 (89)
56 2dmn_A Homeobox protein TGIF2L 99.5 3.8E-14 1.3E-18 124.8 5.0 63 10-76 3-68 (83)
57 1b72_B Protein (PBX1); homeodo 99.4 3.7E-14 1.3E-18 125.5 4.5 59 15-77 2-63 (87)
58 1wi3_A DNA-binding protein SAT 99.4 3.9E-14 1.3E-18 119.5 4.3 62 9-74 2-64 (71)
59 1au7_A Protein PIT-1, GHF-1; c 99.4 2.3E-14 7.7E-19 139.0 2.5 62 11-76 84-145 (146)
60 2l9r_A Homeobox protein NKX-3. 99.4 2.8E-14 9.5E-19 121.8 2.1 55 19-77 9-63 (69)
61 3d1n_I POU domain, class 6, tr 99.4 6.8E-14 2.3E-18 136.2 4.3 62 10-75 89-150 (151)
62 1mnm_C Protein (MAT alpha-2 tr 99.4 7.1E-14 2.4E-18 123.9 3.9 59 13-75 26-87 (87)
63 1lfb_A Liver transcription fac 99.4 3.4E-14 1.2E-18 129.4 1.9 64 12-79 7-91 (99)
64 1le8_B Mating-type protein alp 99.4 6.1E-14 2.1E-18 123.4 3.4 59 15-77 3-64 (83)
65 1e3o_C Octamer-binding transcr 99.4 4.3E-14 1.5E-18 138.9 2.6 61 12-76 99-159 (160)
66 3nau_A Zinc fingers and homeob 99.4 6E-14 2E-18 118.3 3.1 53 21-77 11-63 (66)
67 2da6_A Hepatocyte nuclear fact 99.4 1.2E-13 4E-18 126.1 4.9 69 11-79 3-88 (102)
68 2e19_A Transcription factor 8; 99.4 7.7E-14 2.6E-18 117.3 3.0 54 18-75 7-60 (64)
69 2xsd_C POU domain, class 3, tr 99.4 5.7E-14 2E-18 138.7 2.3 62 12-77 97-158 (164)
70 1x2m_A LAG1 longevity assuranc 99.4 7.1E-14 2.4E-18 117.5 1.3 49 23-75 9-58 (64)
71 3l1p_A POU domain, class 5, tr 99.4 2.4E-13 8.2E-18 133.0 4.3 60 12-75 94-153 (155)
72 2d5v_A Hepatocyte nuclear fact 99.3 3.9E-13 1.3E-17 132.3 2.2 61 13-77 96-156 (164)
73 3k2a_A Homeobox protein MEIS2; 99.3 1.2E-12 4.3E-17 110.7 2.6 54 20-77 4-60 (67)
74 1em2_A MLN64 protein; beta bar 99.2 9.3E-11 3.2E-15 120.1 16.2 178 156-346 21-226 (229)
75 3p0l_A Steroidogenic acute reg 99.2 1.2E-10 4.3E-15 118.6 16.4 174 158-344 12-213 (221)
76 1ic8_A Hepatocyte nuclear fact 99.1 7.4E-12 2.5E-16 126.7 -0.2 61 12-76 113-194 (194)
77 2pso_A STAR-related lipid tran 99.1 4.7E-10 1.6E-14 116.4 12.5 155 161-325 33-210 (237)
78 2lk2_A Homeobox protein TGIF1; 99.0 1.6E-10 5.6E-15 103.0 3.9 55 18-76 9-66 (89)
79 2da7_A Zinc finger homeobox pr 99.0 1.7E-10 6E-15 98.0 2.3 47 23-73 14-60 (71)
80 2h8r_A Hepatocyte nuclear fact 98.9 3.4E-10 1.2E-14 116.1 2.5 58 12-73 140-218 (221)
81 1mh3_A Maltose binding-A1 home 98.9 4.1E-10 1.4E-14 123.3 1.3 55 16-74 367-421 (421)
82 1jss_A Stard4, cholesterol-reg 98.8 1.5E-07 5.3E-12 96.1 16.9 170 157-344 25-222 (224)
83 3fo5_A Thioesterase, adipose a 98.8 1.7E-08 5.7E-13 106.4 9.5 108 206-319 89-221 (258)
84 1ln1_A PC-TP, phosphatidylchol 98.7 9.7E-08 3.3E-12 96.0 11.4 133 205-346 52-210 (214)
85 2nzz_A Penetratin conjugated G 98.4 5.3E-08 1.8E-12 73.2 0.2 20 60-79 1-20 (37)
86 3qsz_A STAR-related lipid tran 98.1 2E-05 6.9E-10 77.7 12.4 130 205-345 27-179 (189)
87 2e3n_A Lipid-transfer protein 97.9 0.00021 7.3E-09 74.0 16.2 176 156-344 22-245 (255)
88 3t50_A Blue-light-activated hi 97.6 0.00064 2.2E-08 59.3 11.4 105 705-810 5-110 (128)
89 4eet_B Phototropin-2; LOV, blu 97.5 0.00079 2.7E-08 56.7 11.4 105 705-810 5-110 (115)
90 3lyx_A Sensory BOX/ggdef domai 97.5 0.0014 4.7E-08 54.9 12.7 112 696-810 5-117 (124)
91 3ue6_A Aureochrome1; PAS/LOV d 97.5 0.001 3.4E-08 60.8 12.0 111 699-810 36-148 (166)
92 1n9l_A PHOT-LOV1, putative blu 97.4 0.0013 4.5E-08 57.5 10.9 103 707-810 3-106 (109)
93 4hia_A LOV protein; PAS, HTH, 97.3 0.0012 4E-08 61.8 10.8 111 699-810 8-120 (176)
94 2gj3_A Nitrogen fixation regul 97.3 0.0023 7.8E-08 56.2 11.8 108 698-810 5-115 (120)
95 3p7n_A Sensor histidine kinase 97.2 0.0016 5.5E-08 65.7 11.2 112 698-810 63-176 (258)
96 3luq_A Sensor protein; PAS, hi 97.2 0.00097 3.3E-08 56.2 8.1 109 698-810 3-112 (114)
97 2z6d_A Phototropin-2; PAS-fold 97.2 0.0031 1E-07 53.1 11.1 110 700-810 8-119 (130)
98 3sw1_A Sensory box protein; li 97.1 0.0023 7.9E-08 58.2 10.5 113 697-810 24-138 (162)
99 1byw_A Protein (human ERG pota 97.1 0.0049 1.7E-07 50.3 11.1 93 717-810 12-106 (110)
100 3f1p_A Endothelial PAS domain- 97.0 0.0054 1.9E-07 53.1 11.3 102 705-809 7-109 (117)
101 3d72_A Vivid PAS protein VVD; 97.0 0.0049 1.7E-07 55.5 11.0 106 703-809 31-148 (149)
102 3mqq_A Transcriptional regulat 96.9 0.0022 7.4E-08 56.1 7.4 105 700-809 5-111 (120)
103 2r78_A Sensor protein; sensory 96.8 0.0077 2.6E-07 53.1 10.7 90 697-789 10-100 (117)
104 2l0w_A Potassium voltage-gated 96.8 0.014 4.9E-07 49.9 11.6 110 700-810 22-134 (138)
105 1d06_A Nitrogen fixation regul 96.7 0.012 4.2E-07 52.2 10.9 89 700-790 18-111 (130)
106 2pr5_A Blue-light photorecepto 96.6 0.014 4.9E-07 51.9 11.2 101 705-808 7-108 (132)
107 3k3c_A Protein RV1364C/MT1410; 96.6 0.0051 1.7E-07 56.1 7.8 110 697-810 16-131 (158)
108 2v0u_A NPH1-1, LOV2; kinase, t 96.5 0.024 8.1E-07 48.8 11.4 105 705-810 10-115 (146)
109 3kx0_X Uncharacterized protein 96.5 0.0058 2E-07 58.5 8.0 111 696-810 35-151 (185)
110 2r55_A STAR-related lipid tran 96.4 0.14 4.8E-06 51.8 18.3 150 362-568 21-181 (231)
111 3f1p_B ARYL hydrocarbon recept 96.4 0.01 3.6E-07 51.7 8.5 101 705-809 10-113 (121)
112 2wkq_A NPH1-1, RAS-related C3 96.4 0.02 6.8E-07 59.8 11.9 106 704-810 18-124 (332)
113 3ewk_A Sensor protein; PAS dom 96.3 0.043 1.5E-06 54.2 13.1 105 703-810 117-227 (227)
114 2vv6_A FIXL, sensor protein FI 96.0 0.037 1.3E-06 48.1 10.1 83 706-790 2-88 (119)
115 3olo_A Two-component sensor hi 96.0 0.042 1.4E-06 46.5 10.2 83 700-789 15-98 (118)
116 3eeh_A Putative light and redo 96.0 0.046 1.6E-06 45.8 10.2 109 698-810 11-123 (125)
117 3mxq_A Sensor protein; PSI2, M 96.0 0.03 1E-06 53.7 9.9 108 699-810 23-143 (152)
118 3ewk_A Sensor protein; PAS dom 95.9 0.029 9.8E-07 55.5 9.8 93 717-810 7-99 (227)
119 3b33_A Sensor protein; structu 95.9 0.027 9.2E-07 48.3 8.2 104 700-810 9-113 (115)
120 3mjq_A Uncharacterized protein 95.8 0.029 9.7E-07 48.0 8.3 99 705-809 7-105 (126)
121 3fc7_A HTR-like protein, senso 95.7 0.028 9.4E-07 48.3 7.7 104 698-810 19-123 (125)
122 3nja_A Probable ggdef family p 95.6 0.03 1E-06 47.5 7.6 108 700-810 9-119 (125)
123 2kdk_A ARYL hydrocarbon recept 95.6 0.053 1.8E-06 46.8 9.2 99 704-805 10-110 (121)
124 3icy_A Sensor protein; sensory 95.3 0.047 1.6E-06 46.2 7.7 110 697-809 3-115 (118)
125 3mfx_A Sensory BOX/ggdef famil 94.9 0.086 2.9E-06 48.5 8.6 87 700-788 9-103 (129)
126 3bwl_A Sensor protein; structu 94.8 0.1 3.5E-06 45.2 8.7 85 698-787 17-104 (126)
127 2pso_A STAR-related lipid tran 94.8 0.75 2.6E-05 47.2 16.3 173 384-650 48-226 (237)
128 1v9y_A Heme PAS sensor protein 94.4 0.22 7.6E-06 44.6 10.0 98 700-801 42-144 (167)
129 1ll8_A PAS kinase; PAS domain, 94.3 0.03 1E-06 48.3 4.0 82 706-788 7-92 (114)
130 3fo5_A Thioesterase, adipose a 94.2 0.63 2.1E-05 48.8 14.2 150 358-568 43-201 (258)
131 1jss_A Stard4, cholesterol-reg 94.0 1.1 3.9E-05 45.1 15.5 144 365-567 26-175 (224)
132 1ln1_A PC-TP, phosphatidylchol 93.5 1.4 4.8E-05 43.5 14.8 68 373-459 13-84 (214)
133 3p0l_A Steroidogenic acute reg 93.3 2.3 7.8E-05 42.6 16.2 192 365-650 12-213 (221)
134 4hi4_A Aerotaxis transducer AE 93.2 0.52 1.8E-05 41.4 10.0 98 700-810 7-117 (121)
135 3qsz_A STAR-related lipid tran 93.2 2.4 8.1E-05 41.1 15.6 54 386-459 3-58 (189)
136 3a0s_A Sensor protein; PAS-fol 93.1 0.84 2.9E-05 35.8 10.2 93 707-809 2-95 (96)
137 3h9w_A Diguanylate cyclase wit 92.4 0.39 1.3E-05 41.1 7.9 89 718-809 13-104 (115)
138 3fg8_A Uncharacterized protein 91.4 0.22 7.4E-06 43.6 5.1 62 705-768 20-81 (118)
139 1em2_A MLN64 protein; beta bar 90.8 9.8 0.00034 38.0 17.4 129 385-568 41-178 (229)
140 1hjb_A Ccaat/enhancer binding 90.6 0.51 1.8E-05 41.8 6.6 48 69-123 28-75 (87)
141 1ci6_A Transcription factor AT 89.2 0.93 3.2E-05 37.6 6.7 45 70-121 16-60 (63)
142 1gu4_A CAAT/enhancer binding p 89.0 0.83 2.8E-05 39.7 6.5 47 69-122 28-74 (78)
143 4f3l_A Mclock, circadian locom 87.7 1.7 5.6E-05 47.0 9.5 96 710-808 254-350 (361)
144 2w0n_A Sensor protein DCUS; si 87.6 0.74 2.5E-05 38.5 5.4 98 698-810 15-116 (118)
145 3vol_A Aerotaxis transducer AE 87.6 2 6.8E-05 43.2 9.4 114 682-810 8-134 (233)
146 2vlg_A Sporulation kinase A; h 87.1 1.3 4.3E-05 39.6 6.9 78 705-788 7-85 (111)
147 1jnm_A Proto-oncogene C-JUN; B 86.9 0.84 2.9E-05 37.6 5.0 45 70-121 15-59 (62)
148 2wt7_A Proto-oncogene protein 86.5 1.6 5.4E-05 36.1 6.5 45 70-121 16-60 (63)
149 1t2k_D Cyclic-AMP-dependent tr 86.3 1.9 6.4E-05 35.3 6.9 45 70-121 15-59 (61)
150 4eho_A Bacteriophytochrome, PA 86.0 1.2 4.1E-05 52.1 7.7 106 702-811 523-628 (635)
151 2jhe_A Transcription regulator 82.4 1.6 5.6E-05 41.2 5.7 89 699-800 81-170 (190)
152 1t2k_D Cyclic-AMP-dependent tr 82.2 5.4 0.00018 32.6 7.9 32 92-123 23-54 (61)
153 2ys9_A Homeobox and leucine zi 81.2 0.58 2E-05 39.8 1.7 43 21-67 13-55 (70)
154 1gd2_E Transcription factor PA 78.9 3.4 0.00012 35.1 5.7 46 72-117 24-69 (70)
155 3s9g_A Protein hexim1; cyclin 78.4 5.3 0.00018 35.9 7.0 43 80-122 47-89 (104)
156 2w6a_A ARF GTPase-activating p 78.1 6.2 0.00021 32.4 6.7 35 86-120 29-63 (63)
157 2jee_A YIIU; FTSZ, septum, coi 77.3 6.1 0.00021 34.5 6.9 44 79-122 22-65 (81)
158 3mr0_A Sensory box histidine k 77.3 9.3 0.00032 34.0 8.7 101 705-809 17-120 (142)
159 2dgc_A Protein (GCN4); basic d 75.7 3.6 0.00012 34.1 4.9 14 70-83 23-36 (63)
160 3rty_A Period circadian protei 73.6 15 0.0005 39.7 10.5 89 707-799 154-248 (339)
161 3a0r_A Sensor protein; four he 72.7 5.6 0.00019 41.1 6.8 98 702-810 12-112 (349)
162 2wt7_A Proto-oncogene protein 72.5 15 0.00051 30.2 7.9 23 100-122 25-47 (63)
163 2d4r_A Hypothetical protein TT 71.4 9.7 0.00033 33.6 7.2 54 293-347 92-146 (147)
164 2wt7_B Transcription factor MA 70.2 6.1 0.00021 35.2 5.3 63 56-122 17-79 (90)
165 1ci6_A Transcription factor AT 69.5 14 0.0005 30.4 7.2 31 92-122 24-54 (63)
166 1hjb_A Ccaat/enhancer binding 66.4 20 0.00069 31.6 7.8 36 90-125 35-70 (87)
167 2e3n_A Lipid-transfer protein 62.8 7.6 0.00026 39.6 5.2 58 384-459 45-105 (255)
168 2j5u_A MREC protein; bacterial 62.6 4.4 0.00015 42.2 3.4 38 82-123 24-61 (255)
169 1gu4_A CAAT/enhancer binding p 62.1 28 0.00096 30.1 7.8 33 93-125 38-70 (78)
170 2qkp_A Uncharacterized protein 61.7 20 0.0007 33.6 7.6 105 698-810 19-129 (151)
171 3m91_A Proteasome-associated A 61.0 17 0.00056 29.1 5.6 36 89-124 14-49 (51)
172 3cax_A Uncharacterized protein 60.8 24 0.00082 38.1 9.0 105 698-811 239-344 (369)
173 4f3l_B BMAL1B; BHLH, PAS, circ 59.3 36 0.0012 37.0 10.1 97 708-807 279-377 (387)
174 1go4_E MAD1 (mitotic arrest de 55.9 32 0.0011 31.1 7.3 20 104-123 74-93 (100)
175 2jn6_A Protein CGL2762, transp 54.9 2.3 8E-05 36.9 -0.2 85 19-127 4-88 (97)
176 1dh3_A Transcription factor CR 54.4 10 0.00034 30.6 3.4 26 99-124 23-48 (55)
177 3m9b_A Proteasome-associated A 50.3 18 0.00062 37.7 5.4 35 83-117 60-94 (251)
178 2yy0_A C-MYC-binding protein; 49.2 25 0.00084 28.2 4.9 31 92-122 20-50 (53)
179 3hnw_A Uncharacterized protein 48.0 39 0.0013 32.1 7.0 34 88-121 93-126 (138)
180 1t6f_A Geminin; coiled-coil, c 47.9 29 0.001 25.7 4.6 27 92-118 8-34 (37)
181 3he5_B Synzip2; heterodimeric 47.8 35 0.0012 26.3 5.2 20 101-120 27-46 (52)
182 2oqq_A Transcription factor HY 46.4 42 0.0014 25.7 5.4 34 89-122 8-41 (42)
183 1nwz_A PYP, photoactive yellow 46.3 54 0.0019 30.5 7.6 96 704-804 24-120 (125)
184 1dip_A Delta-sleep-inducing pe 45.1 34 0.0012 29.3 5.3 31 92-122 16-46 (78)
185 1mzu_A PPR; photoactive yellow 43.4 62 0.0021 30.4 7.5 95 705-804 30-125 (129)
186 2jee_A YIIU; FTSZ, septum, coi 42.9 60 0.002 28.3 6.7 47 76-122 26-72 (81)
187 1a93_B MAX protein, coiled coi 39.5 38 0.0013 24.9 4.1 26 96-121 5-30 (34)
188 2oa5_A Hypothetical protein BQ 38.4 21 0.00073 32.7 3.3 24 100-123 10-33 (110)
189 3m91_A Proteasome-associated A 37.9 1E+02 0.0035 24.5 6.8 37 81-117 13-49 (51)
190 2wt7_B Transcription factor MA 37.2 1.2E+02 0.0041 26.9 7.8 44 71-114 42-85 (90)
191 1deb_A APC protein, adenomatou 36.5 27 0.00091 27.8 3.1 34 86-119 12-45 (54)
192 3hnw_A Uncharacterized protein 35.6 1E+02 0.0035 29.2 7.8 46 77-122 89-134 (138)
193 4dj3_A Period circadian protei 34.6 1.1E+02 0.0037 32.6 8.7 84 710-797 177-264 (317)
194 3lph_A Protein REV; helix-loop 34.5 29 0.00099 29.5 3.2 37 26-80 18-54 (72)
195 3he5_B Synzip2; heterodimeric 33.9 1.6E+02 0.0054 22.7 6.9 40 86-125 5-44 (52)
196 4f3l_A Mclock, circadian locom 33.7 56 0.0019 34.9 6.4 65 696-762 84-149 (361)
197 4dj2_A Period circadian protei 33.3 1.7E+02 0.0057 31.2 9.9 77 709-787 178-256 (320)
198 3gdi_A Period circadian protei 33.1 47 0.0016 35.3 5.5 83 709-795 167-251 (309)
199 1nkp_B MAX protein, MYC proto- 32.4 49 0.0017 28.3 4.6 31 94-124 50-80 (83)
200 3a5t_A Transcription factor MA 32.3 8.2 0.00028 35.4 -0.4 67 56-126 27-93 (107)
201 1uii_A Geminin; human, DNA rep 31.7 1.5E+02 0.0051 25.9 7.4 27 92-118 47-73 (83)
202 2glo_A Brinker CG9653-PA; prot 31.5 21 0.00073 28.1 2.0 46 17-67 2-47 (59)
203 3s9g_A Protein hexim1; cyclin 30.7 1.8E+02 0.006 26.3 7.8 45 77-121 51-95 (104)
204 3m9b_A Proteasome-associated A 30.2 31 0.0011 35.9 3.4 41 86-126 56-96 (251)
205 2dgc_A Protein (GCN4); basic d 30.2 1.8E+02 0.0062 23.8 7.4 22 101-122 33-54 (63)
206 2x7l_M HIV REV; nuclear export 29.6 20 0.00067 33.1 1.6 36 27-80 16-51 (115)
207 3mq7_A Bone marrow stromal ant 28.6 1.8E+02 0.006 27.0 7.6 37 86-122 73-109 (121)
208 1s7o_A Hypothetical UPF0122 pr 27.7 75 0.0026 28.7 5.2 48 19-75 21-68 (113)
209 2yy0_A C-MYC-binding protein; 27.3 67 0.0023 25.6 4.2 27 79-105 21-47 (53)
210 1nlw_A MAD protein, MAX dimeri 27.2 64 0.0022 27.7 4.3 31 93-123 49-79 (80)
211 1deb_A APC protein, adenomatou 26.6 1.8E+02 0.0061 23.2 6.2 27 82-108 15-41 (54)
212 1dh3_A Transcription factor CR 26.3 2.5E+02 0.0084 22.4 7.6 22 100-121 31-52 (55)
213 1t6f_A Geminin; coiled-coil, c 26.2 73 0.0025 23.6 3.7 27 97-123 6-32 (37)
214 1gd2_E Transcription factor PA 25.4 73 0.0025 26.9 4.3 28 96-123 34-61 (70)
215 3nmd_A CGMP dependent protein 25.0 1.8E+02 0.0063 24.7 6.6 29 98-126 40-68 (72)
216 1uii_A Geminin; human, DNA rep 24.8 2.1E+02 0.0072 25.0 7.1 36 76-111 38-73 (83)
217 1wlq_A Geminin; coiled-coil; 2 24.6 1.8E+02 0.0061 25.5 6.6 27 92-118 39-65 (83)
218 3oja_B Anopheles plasmodium-re 24.5 1.3E+02 0.0045 33.9 7.7 24 101-124 554-577 (597)
219 3iv1_A Tumor susceptibility ge 23.9 2.8E+02 0.0097 23.9 7.7 56 68-123 13-78 (78)
220 1hlv_A CENP-B, major centromer 23.9 46 0.0016 29.9 3.1 50 16-72 3-52 (131)
221 3oja_B Anopheles plasmodium-re 23.7 1.5E+02 0.0051 33.5 7.9 29 94-122 554-582 (597)
222 1xsv_A Hypothetical UPF0122 pr 23.4 1E+02 0.0035 27.6 5.2 48 19-75 24-71 (113)
223 1jko_C HIN recombinase, DNA-in 23.1 29 0.00098 25.4 1.2 42 20-70 5-46 (52)
224 3gpv_A Transcriptional regulat 23.0 1.5E+02 0.0052 27.8 6.6 38 15-69 49-86 (148)
225 3a5t_A Transcription factor MA 22.7 2.7 9.3E-05 38.6 -5.4 39 70-108 51-89 (107)
226 3tfz_A Cyclase; helix-GRIP, BE 22.6 1.3E+02 0.0043 28.5 6.0 33 294-326 98-130 (172)
227 3mq7_A Bone marrow stromal ant 22.4 2.2E+02 0.0074 26.4 7.0 30 93-122 73-102 (121)
228 2v66_B Nuclear distribution pr 22.2 2.1E+02 0.0073 26.2 7.0 45 77-121 3-58 (111)
229 1jnm_A Proto-oncogene C-JUN; B 21.9 3.1E+02 0.011 22.0 7.6 32 93-124 24-55 (62)
230 1wlq_A Geminin; coiled-coil; 2 20.9 1.8E+02 0.0062 25.4 5.9 36 75-110 29-64 (83)
231 4dzn_A Coiled-coil peptide CC- 20.5 1.8E+02 0.0062 20.5 4.7 28 94-121 5-32 (33)
232 3oja_A Leucine-rich immune mol 20.3 1.6E+02 0.0053 32.6 7.0 30 95-124 432-461 (487)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.74 E-value=8.9e-17 Score=164.84 Aligned_cols=180 Identities=20% Similarity=0.223 Sum_probs=142.6
Q ss_pred CccchHHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeecc-CCCcceeeeeeeEEeechhHHHHHh--cCCCC-
Q 048771 154 SPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAIS-HGCSGVAARACGLVGLEPTRVAEIL--KDRPR- 229 (814)
Q Consensus 154 ~~~~l~~lA~~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~~~~-~~~~~eAsR~~glV~~~~~~LVe~l--mD~~~- 229 (814)
.+..+.++|++||+|++++++.+ ..|..... +.| +.++-.. .+..+.+.|..|+|.+.+.+|++.| +|.+.
T Consensus 20 ~~~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~-~~g---v~v~~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~~~d~~~r 94 (231)
T 2r55_A 20 FQSMAAQMSEAVAEKMLQYRRDT-AGWKICRE-GNG---VSVSWRPSVEFPGNLYRGEGIVYGTLEEVWDCVKPAVGGLR 94 (231)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC-SSCEEEEC-CSS---EEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHCC--CCSH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCC-CCCEEEEe-CCC---EEEEEEccCCCCCcEEEEEEEECCCHHHHHHHHHhhCcchh
Confidence 35779999999999999999754 68987532 222 2222111 2345688999999999999999999 55554
Q ss_pred ----------------CCc--eeee-----ccccccCceeeEEEeecccCCCcEEEEEeeccCCCCCCCCCCCCCcccee
Q 048771 230 ----------------GSA--ILYA-----LTTLAPARDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTMPPVQHFVRAE 286 (814)
Q Consensus 230 ----------------~G~--~M~a-----~SpLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~ 286 (814)
++. .+|. ++++|++|||.++||+++.++|.|+|+.+|++. +..|+...++|++
T Consensus 95 ~~Wd~~~~~~~vle~i~~~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~----~~~P~~~~~VR~~ 170 (231)
T 2r55_A 95 VKWDENVTGFEIIQSITDTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEH----PLCPPKPGFVRGF 170 (231)
T ss_dssp HHHCTTCSEEEEEEECSSSEEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCC----TTSCCCTTCEEEE
T ss_pred hhhccccceeEEEEEcCCCEEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccC----CCCCCCCCCEEEE
Confidence 333 3332 346899999999999999999999999999984 3455566899999
Q ss_pred ecCcceEEeeCC--CCceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHHH-HHHhh
Q 048771 287 MLPSGYLIRPCE--GGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALR-QLRQM 346 (814)
Q Consensus 287 rlPSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~Lr-~~e~l 346 (814)
.++|||+||+++ +|.|+|||+.|+|..-+ +| +.++++.+..+...|++.|| +|+..
T Consensus 171 ~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 171 NHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp ECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred EEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 999999999998 78999999999999876 66 68899999999999999996 88764
No 2
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=3e-16 Score=137.08 Aligned_cols=67 Identities=28% Similarity=0.552 Sum_probs=61.2
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHHH
Q 048771 9 KTGSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 79 (814)
Q Consensus 9 ~~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe~ 79 (814)
+.++..+++|++||.+|+..||..|..++||+..+|.+||.+| ||+++||++||||||+|+|+++..
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 2 SSGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSCCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CCCHHHhhHHHHHHHHHHHHHhhh
Confidence 3445678889999999999999999999999999999999999 999999999999999999985543
No 3
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=1.4e-16 Score=135.74 Aligned_cols=65 Identities=31% Similarity=0.529 Sum_probs=60.2
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 9 KTGSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 9 ~~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
+.++..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.+
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 2 SSGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAAT----SLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CSSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CCCHHHhhHhhHhHHHHhcccC
Confidence 3455678889999999999999999999999999999999999 9999999999999999999854
No 4
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.5e-16 Score=134.08 Aligned_cols=65 Identities=34% Similarity=0.597 Sum_probs=60.1
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 9 KTGSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 9 ~~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
+.++..+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++.
T Consensus 2 s~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 2 SSGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKV----HLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp CSTTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CCCHHHeehccccccccccccC
Confidence 3445667889999999999999999999999999999999999 9999999999999999999854
No 5
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.61 E-value=2.2e-16 Score=134.32 Aligned_cols=65 Identities=26% Similarity=0.426 Sum_probs=60.4
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 9 KTGSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 9 ~~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
+.+++.+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+++
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 2 SSGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLL----NLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCCHHHhHHhhHhhhHHHhhcc
Confidence 3455678899999999999999999999999999999999999 9999999999999999999854
No 6
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=3.4e-16 Score=133.31 Aligned_cols=64 Identities=30% Similarity=0.521 Sum_probs=59.4
Q ss_pred CCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 10 TGSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 10 ~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.+...+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+.+
T Consensus 3 ~~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 3 SGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----CCCHHHhhHhhHhhHhhcCCCC
Confidence 344567889999999999999999999999999999999999 9999999999999999999854
No 7
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=4.2e-16 Score=136.07 Aligned_cols=64 Identities=27% Similarity=0.553 Sum_probs=59.9
Q ss_pred CCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 10 TGSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 10 ~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.+++.+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKI----NLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CcCHHHhhhhhHHHhHHhhHHH
Confidence 345678889999999999999999999999999999999999 9999999999999999999854
No 8
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.6e-16 Score=135.08 Aligned_cols=64 Identities=19% Similarity=0.403 Sum_probs=59.8
Q ss_pred CCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 10 TGSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 10 ~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.++..+|+|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+++
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 3 SGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT----GLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CCCHHHhhHccHHHHHHHHHHH
Confidence 345668899999999999999999999999999999999999 9999999999999999999854
No 9
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.60 E-value=6.2e-16 Score=134.14 Aligned_cols=66 Identities=27% Similarity=0.433 Sum_probs=60.5
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHH
Q 048771 9 KTGSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 78 (814)
Q Consensus 9 ~~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe 78 (814)
+.+.+.+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.+.
T Consensus 4 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 4 GLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CCSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhcchhhhhc
Confidence 3455667889999999999999999999999999999999999 99999999999999999998543
No 10
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.59 E-value=3.2e-16 Score=130.85 Aligned_cols=61 Identities=31% Similarity=0.418 Sum_probs=56.0
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 13 LDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 13 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVML----NLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CcCHHHhhHHHHhhhhhhhhhc
Confidence 356889999999999999999999999999999999999 9999999999999999999853
No 11
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.59 E-value=2.1e-16 Score=131.42 Aligned_cols=61 Identities=26% Similarity=0.330 Sum_probs=53.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 13 LDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 13 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
..+++|+.||.+|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|++|
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSIL----NLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCHHHhhHHhHHhhcchhhcC
Confidence 356889999999999999999999999999999999999 9999999999999999999854
No 12
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.8e-16 Score=132.99 Aligned_cols=65 Identities=26% Similarity=0.432 Sum_probs=60.1
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 9 KTGSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 9 ~~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
+.++..+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+..
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 2 SSGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASL----GLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CSCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHS----SCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHh----CCCHHHHHHHHHHHhhhhcccC
Confidence 3455678899999999999999999999999999999999999 9999999999999999999843
No 13
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.59 E-value=3.3e-16 Score=133.18 Aligned_cols=64 Identities=25% Similarity=0.423 Sum_probs=59.7
Q ss_pred CCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 10 TGSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 10 ~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.++..+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+++
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKS----GLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHh----CCCHHHHHHHhhhhhHHHhhhc
Confidence 445667889999999999999999999999999999999999 9999999999999999999854
No 14
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5e-16 Score=135.67 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=59.2
Q ss_pred CCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 10 TGSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 10 ~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
..++.+++|+.||.+|+..||..|..++||+..+|.+||.+| ||+++||++||||||+|+|+.+
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CCCHHHeeeccHHHHHHhhccc
Confidence 345567889999999999999999999999999999999999 9999999999999999999843
No 15
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.58 E-value=4.1e-16 Score=135.74 Aligned_cols=63 Identities=29% Similarity=0.461 Sum_probs=58.8
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 11 GSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 11 ~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
..+.+|+|++||.+|+..||..|..++||+..+|.+||.+| ||+++||++||||||+|+|+++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CcCHHHhHHHhHHHHHhHhhhc
Confidence 44567888999999999999999999999999999999999 9999999999999999999854
No 16
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.58 E-value=7.1e-16 Score=138.70 Aligned_cols=64 Identities=28% Similarity=0.425 Sum_probs=59.6
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHH
Q 048771 11 GSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 78 (814)
Q Consensus 11 ~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe 78 (814)
+.+.+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++..
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCChhhcccccHhhhhhhhhhhH
Confidence 44567889999999999999999999999999999999999 99999999999999999998553
No 17
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=9.7e-16 Score=125.55 Aligned_cols=57 Identities=30% Similarity=0.487 Sum_probs=55.0
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 15 NGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 15 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
+++|+.||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH----CcCHHHhhhhhhHhhhhhcc
Confidence 4778999999999999999999999999999999999 99999999999999999986
No 18
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.57 E-value=7e-16 Score=127.86 Aligned_cols=58 Identities=33% Similarity=0.560 Sum_probs=53.2
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 14 DNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 14 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
.+++|+.||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSEL----GLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CcCHHHHHHHhhhhcccccc
Confidence 46889999999999999999999999999999999999 99999999999999999997
No 19
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.57 E-value=7.5e-16 Score=135.00 Aligned_cols=60 Identities=18% Similarity=0.332 Sum_probs=56.8
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhc----CCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 12 SLDNGKYVRYTPEQVEALERLYHE----CPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 12 ~~~~rkr~r~T~~Ql~~LE~~F~~----~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
++.+|+|+.||.+|+..||..|+. ++||+...|.+||.+| ||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~l----gL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQET----GVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHS----CCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHh----CCCcccccCCccccCcCCCC
Confidence 456788999999999999999999 9999999999999999 99999999999999999885
No 20
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.56 E-value=8.7e-16 Score=135.07 Aligned_cols=64 Identities=23% Similarity=0.309 Sum_probs=59.4
Q ss_pred CCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 10 TGSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 10 ~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
...+.+++|+.||.+|+..||..|..++||+..+|.+||.+| ||+++||++||||||+|+|+++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHh
Confidence 345667889999999999999999999999999999999999 9999999999999999999854
No 21
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-15 Score=132.20 Aligned_cols=62 Identities=29% Similarity=0.489 Sum_probs=57.5
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 12 SLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 12 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
....++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 5 ~~~~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 5 SSGPTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSET----KMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCSSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CCCHHHhhHhhHHHHHHHHHhh
Confidence 3445778899999999999999999999999999999999 9999999999999999999854
No 22
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.56 E-value=1e-15 Score=129.88 Aligned_cols=60 Identities=30% Similarity=0.432 Sum_probs=57.2
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 14 DNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 14 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.+++|++||.+|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHH----CcCHhhhhHHhHHHHhHHhHhc
Confidence 46889999999999999999999999999999999999 9999999999999999999854
No 23
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.56 E-value=2.3e-15 Score=130.61 Aligned_cols=63 Identities=30% Similarity=0.399 Sum_probs=58.7
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 11 GSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 11 ~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.+..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhh
Confidence 34557889999999999999999999999999999999999 9999999999999999999854
No 24
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.56 E-value=7.6e-16 Score=130.44 Aligned_cols=62 Identities=24% Similarity=0.509 Sum_probs=58.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHH
Q 048771 13 LDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 78 (814)
Q Consensus 13 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe 78 (814)
..+++|++||.+|+..||..|..++||+..++.+||..+ ||+++||++||||||+|+|+++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHHHhh
Confidence 457889999999999999999999999999999999999 99999999999999999998553
No 25
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=9.2e-16 Score=133.91 Aligned_cols=65 Identities=12% Similarity=0.246 Sum_probs=59.8
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHhHhcC----CCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 9 KTGSLDNGKYVRYTPEQVEALERLYHEC----PKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 9 ~~~~~~~rkr~r~T~~Ql~~LE~~F~~~----~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
+..++.+++|+.||.+|+..||..|..+ +||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 3 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~l----gL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 3 SGSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATEL----NVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHh----CCCHHHhhHhHHHHHHHHhhcc
Confidence 3345667889999999999999999999 999999999999999 9999999999999999999843
No 26
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.55 E-value=1e-15 Score=134.15 Aligned_cols=63 Identities=30% Similarity=0.446 Sum_probs=54.4
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 11 GSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 11 ~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.+..+|+|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.+
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHAL----SLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhhhhhhhc
Confidence 44567889999999999999999999999999999999999 9999999999999999999854
No 27
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.55 E-value=1.9e-15 Score=129.91 Aligned_cols=61 Identities=33% Similarity=0.504 Sum_probs=57.7
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhH
Q 048771 12 SLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 76 (814)
Q Consensus 12 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krr 76 (814)
...+++|++||.+|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATT----NLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHH----TSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHH----CCCHHHHHHHHHHHhHHHHHH
Confidence 3457889999999999999999999999999999999999 999999999999999999984
No 28
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.55 E-value=2.4e-15 Score=131.62 Aligned_cols=63 Identities=27% Similarity=0.547 Sum_probs=58.1
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 11 GSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 11 ~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.++.+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhhhhhhhc
Confidence 34567889999999999999999999999999999999999 9999999999999999999854
No 29
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.55 E-value=1.6e-15 Score=125.36 Aligned_cols=58 Identities=33% Similarity=0.496 Sum_probs=55.2
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhH
Q 048771 15 NGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 76 (814)
Q Consensus 15 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krr 76 (814)
+++|+.||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----CcCHHHHHHhhHHHHhHhhcc
Confidence 4778999999999999999999999999999999999 999999999999999999974
No 30
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.54 E-value=1e-15 Score=128.77 Aligned_cols=60 Identities=30% Similarity=0.695 Sum_probs=57.1
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 14 DNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 14 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.+++|+.||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH----CcCHHHHHHHhHHHHHHHhHHh
Confidence 46889999999999999999999999999999999999 9999999999999999999853
No 31
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.54 E-value=1.8e-15 Score=128.20 Aligned_cols=60 Identities=30% Similarity=0.513 Sum_probs=57.2
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 14 DNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 14 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.+++|++||.+|+..||..|..++||+...+.+||..+ ||+++||++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCHHHhHHHhHHHhhhhhhhh
Confidence 46889999999999999999999999999999999999 9999999999999999999854
No 32
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.54 E-value=2.6e-15 Score=127.18 Aligned_cols=60 Identities=25% Similarity=0.419 Sum_probs=57.0
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 14 DNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 14 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.+++|+.||.+|+..||..|..++||+...+.+||..+ ||+++||++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CcCHHHhhHhhHHHHHHHHHHh
Confidence 36789999999999999999999999999999999999 9999999999999999999854
No 33
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=2.5e-15 Score=128.60 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=55.9
Q ss_pred CCCcccCCHHHHHHHHHhHhc-CCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 15 NGKYVRYTPEQVEALERLYHE-CPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 15 ~rkr~r~T~~Ql~~LE~~F~~-~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.++|++||.+|+..||..|.. ++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH----CcCHHHhhHHhHHHHHHHhhhc
Confidence 467899999999999999996 9999999999999999 9999999999999999999854
No 34
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.54 E-value=1.4e-15 Score=125.56 Aligned_cols=57 Identities=28% Similarity=0.558 Sum_probs=50.7
Q ss_pred CcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 17 kr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKI----GLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----CcCHHHHHHHhhhhhhhhHhhc
Confidence 57899999999999999999999999999999999 9999999999999999999854
No 35
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.54 E-value=1.6e-15 Score=133.06 Aligned_cols=60 Identities=20% Similarity=0.381 Sum_probs=55.7
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhc-----CCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 11 GSLDNGKYVRYTPEQVEALERLYHE-----CPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 11 ~~~~~rkr~r~T~~Ql~~LE~~F~~-----~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
..+.+|+|+.||.+|+..|| .|.+ ++||+...|.+||.+| ||+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~l----gL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHh----CcCcCcccccccccccCCCC
Confidence 34567889999999999999 7999 9999999999999999 99999999999999999885
No 36
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-15 Score=129.29 Aligned_cols=63 Identities=27% Similarity=0.535 Sum_probs=58.8
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 11 GSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 11 ~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.++.+++|++||.+|+..||..|..++||+..++.+||..+ ||+++||++||||||+|+|+++
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRT----DLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CCCHHHHHHHhHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999 9999999999999999999854
No 37
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=3.1e-15 Score=128.43 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=56.2
Q ss_pred CCCCcccCCHHHHHHHHHhHh-cCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 14 DNGKYVRYTPEQVEALERLYH-ECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 14 ~~rkr~r~T~~Ql~~LE~~F~-~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
..++|++||.+|+..||..|. .++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~----~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhc
Confidence 357789999999999999999 59999999999999999 9999999999999999999854
No 38
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.53 E-value=2.2e-15 Score=133.84 Aligned_cols=63 Identities=29% Similarity=0.423 Sum_probs=55.2
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 11 GSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 11 ~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.+..+|+|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CcCHHHhhHHhHHHHHHhHhhc
Confidence 44567889999999999999999999999999999999999 9999999999999999999853
No 39
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.53 E-value=2.7e-15 Score=122.44 Aligned_cols=56 Identities=34% Similarity=0.509 Sum_probs=54.0
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHH
Q 048771 15 NGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 74 (814)
Q Consensus 15 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~K 74 (814)
+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVL----KLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CcCHHHHHHhhHHhhccCC
Confidence 5778999999999999999999999999999999999 9999999999999999986
No 40
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=3.6e-15 Score=129.42 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=54.0
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhH
Q 048771 16 GKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 76 (814)
Q Consensus 16 rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krr 76 (814)
.++.+||.+|+.+||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~t----gLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH----CcCHHHhhHHhHhhHHHHHHH
Confidence 456679999999999999999999999999999999 999999999999999999984
No 41
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.1e-15 Score=130.44 Aligned_cols=62 Identities=19% Similarity=0.314 Sum_probs=57.5
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 12 SLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 12 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
...++.|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 6 ~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 6 SGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT----GLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CCChHHhhHHhHHHhHHHHHhc
Confidence 3445678999999999999999999999999999999999 9999999999999999999854
No 42
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.53 E-value=2.7e-15 Score=126.55 Aligned_cols=59 Identities=29% Similarity=0.490 Sum_probs=56.6
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 15 NGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 15 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
+++|++||++|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKL----NLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CcCHHHhhHhhHhHHHHHhHhc
Confidence 5789999999999999999999999999999999999 9999999999999999999854
No 43
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.52 E-value=3e-15 Score=122.20 Aligned_cols=54 Identities=30% Similarity=0.484 Sum_probs=50.9
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhH
Q 048771 19 VRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 76 (814)
Q Consensus 19 ~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krr 76 (814)
+.||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKAL----RMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHh----CcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999 999999999999999999984
No 44
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.52 E-value=2.3e-15 Score=124.50 Aligned_cols=59 Identities=25% Similarity=0.519 Sum_probs=48.5
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHH
Q 048771 12 SLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 74 (814)
Q Consensus 12 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~K 74 (814)
++.+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhccC
Confidence 3456889999999999999999999999999999999999 9999999999999999976
No 45
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=4.8e-15 Score=133.60 Aligned_cols=65 Identities=26% Similarity=0.556 Sum_probs=60.2
Q ss_pred CCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccC---------------CCccceeeccccchhHHH
Q 048771 10 TGSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSN---------------IEPKQIKVWFQNRRCREK 74 (814)
Q Consensus 10 ~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~g---------------L~~rQVkvWFQNRRaK~K 74 (814)
..++.+|+|+.||++|+..||..|+.++||+..+|++||.+| | |++.||++||||||+|+|
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l----~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~k 78 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANAC----NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIK 78 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CchhhcccccccccCcCCHHHHHHHHHHHHHHHH
Confidence 445677889999999999999999999999999999999999 9 999999999999999999
Q ss_pred hHHH
Q 048771 75 QRKE 78 (814)
Q Consensus 75 rrqe 78 (814)
+++.
T Consensus 79 r~~~ 82 (95)
T 2cuf_A 79 RRAN 82 (95)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8653
No 46
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=6.4e-15 Score=131.65 Aligned_cols=62 Identities=16% Similarity=0.349 Sum_probs=56.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHH
Q 048771 13 LDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 78 (814)
Q Consensus 13 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe 78 (814)
...+++.+||.+|+.+||..|..++||+..+|.+||..| ||+++||+|||||||+|+|++++
T Consensus 10 ~~p~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----gLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 10 FTPQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCS
T ss_pred cCchhhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CcChHHCeecccccchHHHHHHH
Confidence 344566799999999999999999999999999999999 99999999999999999998543
No 47
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=8.9e-15 Score=125.41 Aligned_cols=64 Identities=22% Similarity=0.328 Sum_probs=58.9
Q ss_pred CCCCCCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 10 TGSLDNGKYVRYTPEQVEALERLYHE---CPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 10 ~~~~~~rkr~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.+++.+++|++||.+|+..||..|.. ++||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 3 ~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQT----NLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----CcCHHHHHHHhHHHHhhccccc
Confidence 34566788999999999999999987 9999999999999999 9999999999999999999853
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.50 E-value=5.1e-15 Score=127.19 Aligned_cols=60 Identities=23% Similarity=0.379 Sum_probs=57.0
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 14 DNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 14 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
.++.|+.||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+.+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKIT----GLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CcCHHHeeeCChhHhHHHHhhC
Confidence 45788999999999999999999999999999999999 9999999999999999999854
No 49
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=6.1e-15 Score=133.39 Aligned_cols=62 Identities=31% Similarity=0.538 Sum_probs=55.4
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 12 SLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 12 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
+..+++|+.||.+|+..||..|..++||+..+|.+||.+| ||+++||++||||||+|+|+++
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CCCHHHhHHHHHHHhHHHhHHh
Confidence 4557889999999999999999999999999999999999 9999999999999999999854
No 50
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.49 E-value=5.9e-15 Score=133.30 Aligned_cols=62 Identities=27% Similarity=0.417 Sum_probs=56.1
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 12 SLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 12 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
...+|+|++||.+|+..||..|+.++||+..+|.+||.++ ||+++||++||||||+|+|+.+
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKES----GLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CCCHHHeeecchhhhhHhhhhc
Confidence 3456789999999999999999999999999999999999 9999999999999999999854
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.47 E-value=8.8e-15 Score=122.26 Aligned_cols=58 Identities=26% Similarity=0.482 Sum_probs=55.5
Q ss_pred CCCCcccCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 14 DNGKYVRYTPEQVEALERLY---HECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 14 ~~rkr~r~T~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
.+++|++||.+|+..||..| ..++||+..++.+||.++ ||+++||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhcc
Confidence 46788999999999999999 899999999999999999 99999999999999999986
No 52
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.46 E-value=8.7e-15 Score=125.76 Aligned_cols=59 Identities=20% Similarity=0.372 Sum_probs=55.1
Q ss_pred CCCCcccCCHHHHHHHHHhH-hcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhH
Q 048771 14 DNGKYVRYTPEQVEALERLY-HECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 76 (814)
Q Consensus 14 ~~rkr~r~T~~Ql~~LE~~F-~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krr 76 (814)
+.+++.+++.+|+..||..| ..++||+..+|.+||.++ ||+++||++||||||+|+|+.
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l----~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CCChhhcchhhhhcccCCCCC
Confidence 45667789999999999999 999999999999999999 999999999999999999973
No 53
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.46 E-value=1.7e-14 Score=119.05 Aligned_cols=55 Identities=31% Similarity=0.495 Sum_probs=53.1
Q ss_pred CcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 17 KYVRYTPEQVEALERLYHE---CPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 17 kr~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
++++||.+|+..||..|.. ++||+..++.+||.++ ||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHccccc
Confidence 4689999999999999999 9999999999999999 99999999999999999987
No 54
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.46 E-value=1.6e-14 Score=123.76 Aligned_cols=59 Identities=27% Similarity=0.530 Sum_probs=56.2
Q ss_pred CCCcccCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 15 NGKYVRYTPEQVEALERLY---HECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 15 ~rkr~r~T~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
+++|++||.+|+..||..| ..++||+..+|.+||.++ ||+++||++||||||+|+|++.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~ 63 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhccccc
Confidence 5788999999999999999 899999999999999999 9999999999999999999844
No 55
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.4e-14 Score=126.81 Aligned_cols=60 Identities=23% Similarity=0.376 Sum_probs=55.6
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 14 DNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 14 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
...++.++|.+|+.+||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 13 ~p~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~----~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 13 APQKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVET----KLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTSC
T ss_pred CccccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHh----CCCHHhccHhhHhHHHHHHHHh
Confidence 34567789999999999999999999999999999999 9999999999999999999744
No 56
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.45 E-value=3.8e-14 Score=124.84 Aligned_cols=63 Identities=27% Similarity=0.308 Sum_probs=57.7
Q ss_pred CCCCCCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhH
Q 048771 10 TGSLDNGKYVRYTPEQVEALERLYHE---CPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 76 (814)
Q Consensus 10 ~~~~~~rkr~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krr 76 (814)
.+.+.+++|++||.+|+..||..|.+ ++||+..+|.+||.++ ||+++||++||||||+|+|+.
T Consensus 3 ~~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~----gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 3 SGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT----NLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHhhHHhhhhHhhhcHH
Confidence 34456788999999999999999988 5999999999999999 999999999999999999874
No 57
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.44 E-value=3.7e-14 Score=125.48 Aligned_cols=59 Identities=27% Similarity=0.530 Sum_probs=55.8
Q ss_pred CCCcccCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 15 NGKYVRYTPEQVEALERLY---HECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 15 ~rkr~r~T~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
+|+|++||.+|+..||..| ..++||+..+|.+||.++ ||+++||++||||||+|+|++.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhcc
Confidence 5788999999999999999 899999999999999999 9999999999999999999854
No 58
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=3.9e-14 Score=119.55 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=57.1
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHhHhc-CCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHH
Q 048771 9 KTGSLDNGKYVRYTPEQVEALERLYHE-CPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 74 (814)
Q Consensus 9 ~~~~~~~rkr~r~T~~Ql~~LE~~F~~-~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~K 74 (814)
++.++.+|.|+.||.+|+..|+..|+. ++||+...|++||.++ ||++++|++||||||--.|
T Consensus 2 ~~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~t----GL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 2 SSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQL----DLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCCHHHHHHhhccceeeec
Confidence 345577899999999999999999999 9999999999999999 9999999999999997544
No 59
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.43 E-value=2.3e-14 Score=139.01 Aligned_cols=62 Identities=34% Similarity=0.498 Sum_probs=55.5
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhH
Q 048771 11 GSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 76 (814)
Q Consensus 11 ~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krr 76 (814)
.++.+|+|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CCChhhchhhhHhhhhhhhcc
Confidence 34567789999999999999999999999999999999999 999999999999999999985
No 60
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.42 E-value=2.8e-14 Score=121.81 Aligned_cols=55 Identities=31% Similarity=0.526 Sum_probs=52.5
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 19 VRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 19 ~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
..+|..|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l----~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNL----KLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHSCCSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCChhheeecchhhhhhhhhhh
Confidence 468999999999999999999999999999999 9999999999999999999855
No 61
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.41 E-value=6.8e-14 Score=136.17 Aligned_cols=62 Identities=27% Similarity=0.540 Sum_probs=58.2
Q ss_pred CCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 10 TGSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 10 ~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
..++.+|+|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+||
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKEL----NYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CCCHHHhHHHHHHHHhccCC
Confidence 345667889999999999999999999999999999999999 99999999999999999986
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.41 E-value=7.1e-14 Score=123.91 Aligned_cols=59 Identities=29% Similarity=0.430 Sum_probs=55.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 13 LDNGKYVRYTPEQVEALERLYHE---CPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 13 ~~~rkr~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
.++++|++||.+|+..||..|.. ++||+..+|.+||.++ ||+++||++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~----gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhccC
Confidence 45677899999999999999999 9999999999999999 99999999999999999983
No 63
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.41 E-value=3.4e-14 Score=129.39 Aligned_cols=64 Identities=23% Similarity=0.413 Sum_probs=54.1
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHh------------------cCcccC---CCccceeeccccch
Q 048771 12 SLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRE------------------CPILSN---IEPKQIKVWFQNRR 70 (814)
Q Consensus 12 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~------------------L~~~~g---L~~rQVkvWFQNRR 70 (814)
++.+|+|+.||+.|+..||..|..++||+...|.+||.. | | |++.||++||||||
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~l----g~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGL----GSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTT----GGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcccccccccccccccccc----CccccCcceeeeccHHHH
Confidence 455788999999999999999999999999999999999 7 8 99999999999999
Q ss_pred hHHHhHHHH
Q 048771 71 CREKQRKEA 79 (814)
Q Consensus 71 aK~Krrqe~ 79 (814)
+++|+++..
T Consensus 83 ~k~k~k~~~ 91 (99)
T 1lfb_A 83 KEEAFRHKL 91 (99)
T ss_dssp HTTSCCC--
T ss_pred HHHHHhchh
Confidence 999986643
No 64
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.41 E-value=6.1e-14 Score=123.42 Aligned_cols=59 Identities=27% Similarity=0.411 Sum_probs=54.4
Q ss_pred CCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 15 NGKYVRYTPEQVEALERLYHE---CPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 15 ~rkr~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
++++++||.+|+..||..|.. ++||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~----gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHH----CCCHHHcccccHHHHccccccc
Confidence 456778999999999999999 9999999999999999 9999999999999999999854
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.41 E-value=4.3e-14 Score=138.93 Aligned_cols=61 Identities=33% Similarity=0.441 Sum_probs=54.7
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhH
Q 048771 12 SLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 76 (814)
Q Consensus 12 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krr 76 (814)
.+.+|+|+.||..|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH----CCChHHhhHhhHHhhhhhhcc
Confidence 3567889999999999999999999999999999999999 999999999999999999984
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.41 E-value=6e-14 Score=118.27 Aligned_cols=53 Identities=25% Similarity=0.404 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 21 YTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 21 ~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
-|.+|+.+||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~t----gLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVT----GLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CcCHHHhhHhcccchhhhhccC
Confidence 4789999999999999999999999999999 9999999999999999999743
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.2e-13 Score=126.09 Aligned_cols=69 Identities=23% Similarity=0.429 Sum_probs=59.6
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcC-------------ccc----CCCccceeeccccchhHH
Q 048771 11 GSLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECP-------------ILS----NIEPKQIKVWFQNRRCRE 73 (814)
Q Consensus 11 ~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~-------------~~~----gL~~rQVkvWFQNRRaK~ 73 (814)
.++.+|+|+.||+.|+.+||..|..++||+..+|++||.+|- .++ ++++.+|++||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 445678899999999999999999999999999999999981 011 588999999999999999
Q ss_pred HhHHHH
Q 048771 74 KQRKEA 79 (814)
Q Consensus 74 Krrqe~ 79 (814)
|+++..
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 986543
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=7.7e-14 Score=117.28 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=50.8
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 18 YVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 18 r~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
...++.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|.|+
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSV----NLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CcChhhcCcchhcccCCCCC
Confidence 3566799999999999999999999999999999 99999999999999999876
No 69
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.39 E-value=5.7e-14 Score=138.70 Aligned_cols=62 Identities=31% Similarity=0.474 Sum_probs=51.7
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 12 SLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 12 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
++.+|+|++||..|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.+
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTBSC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CCChhhhhhhhHHhhHHHhhcc
Confidence 4567789999999999999999999999999999999999 9999999999999999999855
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.37 E-value=7.1e-14 Score=117.53 Aligned_cols=49 Identities=24% Similarity=0.500 Sum_probs=46.4
Q ss_pred HHHHHHHHHhH-hcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 23 PEQVEALERLY-HECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 23 ~~Ql~~LE~~F-~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
+.|+.+||+.| ..++||+..+|.+||.+| ||+++||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l----~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCCHHHHHHHHHHHHhccCC
Confidence 56899999999 678999999999999999 99999999999999999986
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.36 E-value=2.4e-13 Score=133.02 Aligned_cols=60 Identities=25% Similarity=0.440 Sum_probs=57.2
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 12 SLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 12 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
+..+|+|++||..|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQL----GLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHc----CCChhheeeccccccccccC
Confidence 3567889999999999999999999999999999999999 99999999999999999997
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.30 E-value=3.9e-13 Score=132.29 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=54.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 13 LDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 13 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
+.+|+|+.||.+|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|+..
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l----~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQL----GLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CcCHHHhhhcChhhhccccccC
Confidence 457889999999999999999999999999999999999 9999999999999999999844
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.26 E-value=1.2e-12 Score=110.73 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=50.1
Q ss_pred cCCHHHHHHHHHhHh---cCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHH
Q 048771 20 RYTPEQVEALERLYH---ECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 77 (814)
Q Consensus 20 r~T~~Ql~~LE~~F~---~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrq 77 (814)
+||.+|+..||..|. .+|||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~ 60 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDT----GLTILQVNNWFINARRRIVQPM 60 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh----CcCHHHhhhhhHHHHHHHhHHH
Confidence 799999999999999 99999999999999999 9999999999999999999843
No 74
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.25 E-value=9.3e-11 Score=120.06 Aligned_cols=178 Identities=16% Similarity=0.144 Sum_probs=129.3
Q ss_pred cchHHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeeccCCCcceeeeeeeEEeechhHHH-HHhcCCCC-----
Q 048771 156 AGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAISHGCSGVAARACGLVGLEPTRVA-EILKDRPR----- 229 (814)
Q Consensus 156 ~~l~~lA~~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~~~~~~~~~eAsR~~glV~~~~~~LV-e~lmD~~~----- 229 (814)
...+.++++|+++++.+... .-.|-.....+.|--++... . .+ .+-.-|..++|...+..|. ++|+|...
T Consensus 21 ~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g~~vy~~~-~-~~-~g~~~k~~~~v~~~~~~v~~~~~~d~~~r~~Wd 96 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILAQ-EENWKFEKNNEYGDTVYTIE-V-PF-HGKTFILKTFLPCPAELVYQEVILQPERMVLWN 96 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTCCEEEEEE-E-TT-TEEEEEEEEEESSCHHHHHHHTTTCHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCCCEEEEEe-c-CC-CCceEEEEEEecCCHHHHHHHHHhCccchhhcc
Confidence 45688999999999999863 34796642211221112111 0 11 1224589999999999998 77766653
Q ss_pred -------------CCc----eeeec--cccccCceeeEEEeecccCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCc
Q 048771 230 -------------GSA----ILYAL--TTLAPARDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPS 290 (814)
Q Consensus 230 -------------~G~----~M~a~--SpLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPS 290 (814)
.++ ++++| .+++++|||.++|+++.. ++.++||-.|++. +..|+...++|+..+++
T Consensus 97 ~~~~~~~vle~~~~~t~I~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv~~----~~~P~~~~~VR~~~~~~ 171 (229)
T 1em2_A 97 KTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGIATSH----SAKPPTHKYVRGENGPG 171 (229)
T ss_dssp TTEEEEEEEEEETTTEEEEEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEEECCC----TTSCCCTTSEECEECSE
T ss_pred cccceEEEEEecCCCeEEEEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEecccC----CCCCCCCCCEeeeeccc
Confidence 233 33434 578999999999999987 5669999999974 34556668999999999
Q ss_pred ceEEeeCC--CCceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHHH-HHHhh
Q 048771 291 GYLIRPCE--GGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALR-QLRQM 346 (814)
Q Consensus 291 GclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~Lr-~~e~l 346 (814)
|++|++++ +|.|+|||+-|++..-+ +| +.++++.+.-+.-.++..|| +|+.+
T Consensus 172 g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~~~ 226 (229)
T 1em2_A 172 GMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRISEL 226 (229)
T ss_dssp EEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988 67899999999988765 66 57787777777777888886 67654
No 75
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.24 E-value=1.2e-10 Score=118.61 Aligned_cols=174 Identities=20% Similarity=0.273 Sum_probs=127.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeeccCCCcceeeeeeeEEeechhHHHHHh-cCCCC-------
Q 048771 158 LLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAISHGCSGVAARACGLVGLEPTRVAEIL-KDRPR------- 229 (814)
Q Consensus 158 l~~lA~~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~~~~~~~~~eAsR~~glV~~~~~~LVe~l-mD~~~------- 229 (814)
...+|++||++++.+.. ++.-|-.....+.|-..+.. .. .+. +-.-|..++|...+..|.+.| +|.+.
T Consensus 12 y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~gv~vy~~-~~-~~~-g~~~k~~~~v~~~~~~v~~~l~~d~~~r~~Wd~~ 87 (221)
T 3p0l_A 12 YLQQGEEAMQKALGILS-NQEGWKKESQQDNGDKVMSK-VV-PDV-GKVFRLEVVVDQPMERLYEELVERMEAMGEWNPN 87 (221)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTCEEEEECTTSCEEEEE-EC-SSS-CEEEEEEEEESSCHHHHHHHHTTTGGGTTTSCTT
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCeEeeecCCCcEEEEE-Ec-CCC-ceEEEEEEEEcCCHHHHHHHHHhccchhhhcCcc
Confidence 57899999999999975 34579765201223222211 11 122 456699999999999999998 46433
Q ss_pred -----------CCc-eeee-----ccccccCceeeEEEeecccCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCcce
Q 048771 230 -----------GSA-ILYA-----LTTLAPARDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGY 292 (814)
Q Consensus 230 -----------~G~-~M~a-----~SpLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGc 292 (814)
+.+ ..|. +.+++++|||.++||.++. +|.++|+-.|++. +..|+...++|+..+++|+
T Consensus 88 ~~~~~vle~~~~~t~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~~----~~~P~~~g~VR~~~~~~g~ 162 (221)
T 3p0l_A 88 VKEIKVLQKIGKDTFITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATDF----GNMPEQKGVIRAEHGPTCM 162 (221)
T ss_dssp CSEEEEEEECSSSEEEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECCC----TTSCCCTTSEECEECSCEE
T ss_pred hheEEEEEecCCCeEEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEeccC----CCCCCCCCeEEEeccceEE
Confidence 223 2332 2458999999999999985 6899999999873 3445556899999999999
Q ss_pred EEeeCCCC--ceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHHH-HHH
Q 048771 293 LIRPCEGG--GSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALR-QLR 344 (814)
Q Consensus 293 lIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~Lr-~~e 344 (814)
+|+++++| .|+|||+-|+|..-+ +| +.+++..+.-+.--++..|| +|+
T Consensus 163 ~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 163 VLHPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp EEEEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988 999999999998866 55 36777777677777888886 665
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.10 E-value=7.4e-12 Score=126.69 Aligned_cols=61 Identities=28% Similarity=0.519 Sum_probs=53.5
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccC---------------------CCccceeeccccch
Q 048771 12 SLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSN---------------------IEPKQIKVWFQNRR 70 (814)
Q Consensus 12 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~g---------------------L~~rQVkvWFQNRR 70 (814)
++.+|+|+.||+.|+.+||..|..++||+...|.+||..| | |++.||++||||||
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~----~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR 188 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEEC----NRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 188 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHH----HHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHH
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CchhhccccccccccccccccccCccccchhchhhh
Confidence 3557888999999999999999999999999999999999 9 99999999999999
Q ss_pred hHHHhH
Q 048771 71 CREKQR 76 (814)
Q Consensus 71 aK~Krr 76 (814)
+|+|.|
T Consensus 189 ~~~k~~ 194 (194)
T 1ic8_A 189 KEEAFR 194 (194)
T ss_dssp HHCC--
T ss_pred hhhhcC
Confidence 998753
No 77
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.09 E-value=4.7e-10 Score=116.40 Aligned_cols=155 Identities=23% Similarity=0.292 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeec--cCCCcceeeeeeeEEeechhHHH-HHhcCCCC--------
Q 048771 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAI--SHGCSGVAARACGLVGLEPTRVA-EILKDRPR-------- 229 (814)
Q Consensus 161 lA~~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~~~--~~~~~~eAsR~~glV~~~~~~LV-e~lmD~~~-------- 229 (814)
++++++.|+++.+.....-|-.... +.| +.++-. ..+...-.-|..++|...+.+++ ++|.|+.+
T Consensus 33 ~l~~~~~~ll~~~~~~~~gW~~~~~-~~g---i~V~~k~~~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~Wd~~~~~~ 108 (237)
T 2pso_A 33 YLNHLIQGLQKEAKEKFKGWVTCSS-TDN---TDLAFKKVGDGNPLKLWKASVEVEAPPSVVLNRVLRERHLWDEDFVQW 108 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCSCEEECC-SSS---CEEEEECCCSSCCCCEEEEEEEESSCHHHHHHHHHHCGGGTCTTBCCC
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEec-CCC---eEEEEEEcCCCCCcEEEEEEEEEcCChHHHHHHHHhhhhhHHhhhceE
Confidence 4467777888776544556976532 122 222211 23444456688999988787765 68888655
Q ss_pred -------CCc-ee---eeccccccCceeeEEEeecc-cCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCcceEEeeC
Q 048771 230 -------GSA-IL---YALTTLAPARDFWLLRYTSV-LEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRPC 297 (814)
Q Consensus 230 -------~G~-~M---~a~SpLvp~Re~~fLRyckq-~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~ 297 (814)
..+ .. +.+...+++|||.++||.++ +++|.++||-.|++. +..|+. .++|+..+++|++|+|+
T Consensus 109 ~vle~id~~~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h----~~~P~~-g~VR~~~~~~g~~i~P~ 183 (237)
T 2pso_A 109 KVVETLDRQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEH----EEAQLL-GGVRAVVMDSQYLIEPC 183 (237)
T ss_dssp EEEEEEETTEEEEEEEECCSSSCCCEEEEEEEEEESCCGGGCEEEEEEECCC----TTCCCC-SSEECCEEEEEEEEEEC
T ss_pred EEEEEcCCCcEEEEEEecCCCCcCCeEEEEEEEEEEECCCCEEEEEEEcccC----CCCCCC-CcEEEEEeccEEEEEEC
Confidence 222 22 23444589999999999985 789999999999984 334555 88999999999999999
Q ss_pred CCCceEEEEEEeeeccCCCcCccchhhh
Q 048771 298 EGGGSIIHIVDHMDLEPWSVPEVLRPLY 325 (814)
Q Consensus 298 ~nG~skVtwVeH~e~d~~~v~~l~rpl~ 325 (814)
++|.|+|||+-|++.. ..+|.-+..++
T Consensus 184 ~~~~t~vt~~~~~Dp~-G~iP~~ln~~~ 210 (237)
T 2pso_A 184 GSGKSRLTHICRIDLK-GHSPEWYSKGF 210 (237)
T ss_dssp STTCEEEEEEEEECCS-SSCTTTTTTHH
T ss_pred CCCCEEEEEEEEeCCC-CCchHHHHHHH
Confidence 9999999999999987 56787553333
No 78
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.00 E-value=1.6e-10 Score=102.99 Aligned_cols=55 Identities=24% Similarity=0.273 Sum_probs=51.6
Q ss_pred cccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhH
Q 048771 18 YVRYTPEQVEALERLYHE---CPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 76 (814)
Q Consensus 18 r~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krr 76 (814)
.+-|+.+++..|+..|.+ +|||+..+|.+||.++ ||+++||++||||||.|+|+.
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~t----gLt~~QV~~WF~NrR~R~kk~ 66 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQT----HLSTLQVCNWFINARRRLLPD 66 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHS----SSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhH
Confidence 356899999999999988 8999999999999999 999999999999999999874
No 79
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=1.7e-10 Score=97.97 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=44.7
Q ss_pred HHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHH
Q 048771 23 PEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCRE 73 (814)
Q Consensus 23 ~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~ 73 (814)
.+|+..||..|..+++|+..++.+||..+ ||+.+.||+||||||++.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~l----gL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAV----GLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCHHHHHHHHhhccccc
Confidence 57899999999999999999999999999 999999999999999753
No 80
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.90 E-value=3.4e-10 Score=116.07 Aligned_cols=58 Identities=28% Similarity=0.524 Sum_probs=52.1
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccC---------------------CCccceeeccccch
Q 048771 12 SLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSN---------------------IEPKQIKVWFQNRR 70 (814)
Q Consensus 12 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~g---------------------L~~rQVkvWFQNRR 70 (814)
++.+|.|+.|++.|+.+||..|..++||+..+|++||..| | |++.||++||||||
T Consensus 140 ~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~----n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 140 KKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEEC----NRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----HHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----ChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 3556778899999999999999999999999999999998 6 88999999999999
Q ss_pred hHH
Q 048771 71 CRE 73 (814)
Q Consensus 71 aK~ 73 (814)
++.
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 865
No 81
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.85 E-value=4.1e-10 Score=123.27 Aligned_cols=55 Identities=27% Similarity=0.595 Sum_probs=52.1
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHH
Q 048771 16 GKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 74 (814)
Q Consensus 16 rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~K 74 (814)
+.+..++.+|+..||+.|+.++||+..+|.+||+++ ||+++||++||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~----~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHH----CcCHHHhhHhhhhcccccC
Confidence 446789999999999999999999999999999999 9999999999999999976
No 82
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.76 E-value=1.5e-07 Score=96.12 Aligned_cols=170 Identities=21% Similarity=0.310 Sum_probs=119.5
Q ss_pred chHHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeec-cCCCcceeeeeeeEEeechhHHHHHhcCCCC------
Q 048771 157 GLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAI-SHGCSGVAARACGLVGLEPTRVAEILKDRPR------ 229 (814)
Q Consensus 157 ~l~~lA~~Am~Ell~la~~~eplWi~~~g~k~g~d~~~~~~~-~~~~~~eAsR~~glV~~~~~~LVe~lmD~~~------ 229 (814)
.+.+.+.++|..+..+ .+..|-.... +.| +.++-. ..+..+-.-|..++|...+..|.+.|+|...
T Consensus 25 ~~~~~~~e~l~~~~~~---~~~~W~~~~~-~~g---v~vy~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~d~~~r~~Wd~ 97 (224)
T 1jss_A 25 SISTKLQNTLIQYHSI---EEDEWRVAKK-AKD---VTVWRKPSEEFNGYLYKAQGVMDDVVNNVIDHIRPGPWRLDWDR 97 (224)
T ss_dssp THHHHHHHHHHHHTTS---CGGGCEEEEE-ETT---EEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHSSSTTHHHHCS
T ss_pred HHHHHHHHHHHHHhhh---CCCCCEEEEE-CCC---EEEEEEeccCCCceEEEEEEEEeCCHHHHHHHHhCccccccccc
Confidence 3566666666655443 3556965421 112 222221 2233445669999999999999999999764
Q ss_pred -----------C-Cc-eeee-----ccccccCceeeEEEeecccCCCcEEEEEeeccCCCCCCCCCCCCCccceeecCcc
Q 048771 230 -----------G-SA-ILYA-----LTTLAPARDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTMPPVQHFVRAEMLPSG 291 (814)
Q Consensus 230 -----------~-G~-~M~a-----~SpLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSG 291 (814)
+ .+ ..|. +-|++.+|||.++|+.++.++| ++|+-+|++.. ..+ ..++|++.+++|
T Consensus 98 ~~~~~~vle~id~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~hp----~~~--~g~VR~~~~~~g 170 (224)
T 1jss_A 98 LMTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEWS----ETR--PEFVRGYNHPCG 170 (224)
T ss_dssp SEEEEEEEEECSTTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCCC----CCC--TTSEECEECSEE
T ss_pred ceeeEEEEEEcCCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeecC----CCC--CCCEEEEecccE
Confidence 2 22 2222 2346999999999999998877 78899998732 222 378999999999
Q ss_pred eEEeeCCCC--ceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHHH-HHH
Q 048771 292 YLIRPCEGG--GSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALR-QLR 344 (814)
Q Consensus 292 clIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~Lr-~~e 344 (814)
++|+++++| .|+|||+-|+|..-+ +| +.+++..+.-+...++..|| +|+
T Consensus 171 ~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 171 WFCVPLKDSPSQSLLTGYIQTDLRGM-IP---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp EEEEEETTEEEEEEEEEEECEECCSC-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCceEEEEEEEeCCCCC-cc---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 999999875 899999999998754 55 36777776677778888886 543
No 83
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.75 E-value=1.7e-08 Score=106.45 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=88.4
Q ss_pred eeeeeeEEeechhHHHHHhcCCCC-----------------CCc----eeeeccc--cccCceeeEEEeecc-cCCCc-E
Q 048771 206 AARACGLVGLEPTRVAEILKDRPR-----------------GSA----ILYALTT--LAPARDFWLLRYTSV-LEDGS-L 260 (814)
Q Consensus 206 AsR~~glV~~~~~~LVe~lmD~~~-----------------~G~----~M~a~Sp--Lvp~Re~~fLRyckq-~~~G~-w 260 (814)
.=|..++|...+..|.+.|+|.+. ++. ++.+|+| ++++|||..|||.+. ..+|. .
T Consensus 89 ~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~~~~~vle~id~~~ivY~~~~p~~~~~v~~RDFV~lr~~r~~~~~G~~y 168 (258)
T 3fo5_A 89 SFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDEDDAIYHVTSPALGGHTKPQDFVILASRRKPCDNGDPY 168 (258)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTCTTCCEEEEEEEEETTEEEEEEEECCCTTCSSCEEEEEEEEEECCSSTTCCE
T ss_pred EEEEEEEEeCCHHHHHHHHhCchhHhHhhhhccEEEEEEEcCCCeEEEEEecCCccCCCCCCEEEEEEEEEeccCCCCEE
Confidence 348899999999999999999875 222 3445775 799999999999987 45775 9
Q ss_pred EEEEeeccCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCcCc
Q 048771 261 VVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE 319 (814)
Q Consensus 261 aVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~ 319 (814)
+|+-+|++. +..|+...|+|++.+|+||+|+++++|.|+||++-|++- ..+|.
T Consensus 169 vi~~~SV~h----p~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp--G~lP~ 221 (258)
T 3fo5_A 169 VIALRSVTL----PTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP--GVLNY 221 (258)
T ss_dssp EEEEEEEEC----TTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG--GGHHH
T ss_pred EEEEEeccC----CCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC--CCCCc
Confidence 999999983 345666789999999999999999999999999988873 44544
No 84
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.66 E-value=9.7e-08 Score=95.98 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=100.7
Q ss_pred eeeeeeeEEe-echhHHHHHhcCCCC----------------CCc-e----eeeccccccCceeeEEEeecccC-CC--c
Q 048771 205 VAARACGLVG-LEPTRVAEILKDRPR----------------GSA-I----LYALTTLAPARDFWLLRYTSVLE-DG--S 259 (814)
Q Consensus 205 eAsR~~glV~-~~~~~LVe~lmD~~~----------------~G~-~----M~a~SpLvp~Re~~fLRyckq~~-~G--~ 259 (814)
-.-|..++|. ..+..+.+.|+|.+. .|+ . +.+|.|+ ..|||.++|+++.++ +| .
T Consensus 52 ~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~~~~~i~~~~~~~p~p~-~~RD~v~~~~~~~~~~~g~~~ 130 (214)
T 1ln1_A 52 YEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPM-SNRDYVYLRQRRDLDMEGRKI 130 (214)
T ss_dssp EEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEETTEEEEEEEECCCTTS-CCEEEEEEEEEEEECSTTCCE
T ss_pred EEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHhhEEEeccCCCEEEEEEEEcCCCC-CCceEEEEEEEEecccCCCeE
Confidence 4669999994 999999999999643 344 2 3336675 999999999998875 66 4
Q ss_pred EEEEEeeccCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHH
Q 048771 260 LVVCERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAA 339 (814)
Q Consensus 260 waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~ 339 (814)
|+|+-.|++. +..|+...++|++.+++|++|++.++|.|+||++-|+|.. ..+|.- +++....-+...++..
T Consensus 131 ~~i~~~Sv~~----p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~---l~n~~~~~~~~~~l~~ 202 (214)
T 1ln1_A 131 HVILARSTSM----PQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSW---LINWAAKNGVPNFLKD 202 (214)
T ss_dssp EEEEEEECCB----TTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHH---HHHHHHHTHHHHHHHH
T ss_pred EEEEEecccC----CCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHH---HHHHHHHHHhHHHHHH
Confidence 9999999974 3345556889999999999999999999999999999987 567753 3433333355556666
Q ss_pred HH-HHHhh
Q 048771 340 LR-QLRQM 346 (814)
Q Consensus 340 Lr-~~e~l 346 (814)
|+ +|+..
T Consensus 203 l~k~~~~y 210 (214)
T 1ln1_A 203 MARACQNY 210 (214)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 64 56543
No 85
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.36 E-value=5.3e-08 Score=73.16 Aligned_cols=20 Identities=55% Similarity=0.896 Sum_probs=17.8
Q ss_pred cceeeccccchhHHHhHHHH
Q 048771 60 KQIKVWFQNRRCREKQRKEA 79 (814)
Q Consensus 60 rQVkvWFQNRRaK~Krrqe~ 79 (814)
+||+|||||||+|||+++.+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 69999999999999996654
No 86
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.10 E-value=2e-05 Score=77.72 Aligned_cols=130 Identities=21% Similarity=0.167 Sum_probs=92.9
Q ss_pred eeeeeeeEEeechhHHHHHhcCCCC-----------------CCc-eeee----ccccccCceeeEEEeecccCCCcEEE
Q 048771 205 VAARACGLVGLEPTRVAEILKDRPR-----------------GSA-ILYA----LTTLAPARDFWLLRYTSVLEDGSLVV 262 (814)
Q Consensus 205 eAsR~~glV~~~~~~LVe~lmD~~~-----------------~G~-~M~a----~SpLvp~Re~~fLRyckq~~~G~waV 262 (814)
-.-|..++|...+.++.+.|+|.+. +++ ..|. |- .+..|||.++|+.+..++|...|
T Consensus 27 ~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~~~~~vle~~~~~~i~y~~~~~p~-p~~~RD~v~~~~~~~~~~g~~~i 105 (189)
T 3qsz_A 27 REFRGEVRLKAAADDVVKVLRDANAFRQWMPDVAASELLKATDTEQYHYLDNSAPW-PVSNRDGVYHFTYEKAGDGAITV 105 (189)
T ss_dssp CEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEEEEECSSEEEEEEEECCSS-SCCCEEEEEEEEEEECTTSCEEE
T ss_pred EEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhcCEEEEEeecCCceEEEEEeecCC-CcCCcceEEEEEEEECCCCeEEE
Confidence 4578899999999999999999876 233 3333 33 48899999999999887887655
Q ss_pred EEeeccCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHHH-
Q 048771 263 CERSLKNIQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALR- 341 (814)
Q Consensus 263 vDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~Lr- 341 (814)
+=.+ + .+..|+...++|++.+++|++|++ ++|.|+||++-|+|..- .+|. -+++....-+.-..+..||
T Consensus 106 ~~~~-~----~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G-~iP~---~lvn~~~~~~~~~~l~~L~k 175 (189)
T 3qsz_A 106 RVEA-V----PDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGG-SIPS---WLANQTVVETPFGTLKALRS 175 (189)
T ss_dssp EEEE-C----TTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCS-SSCH---HHHHHTTTHHHHHHHHHHHH
T ss_pred EEEc-C----CCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCC-CCCH---HHHHHHHHHHHHHHHHHHHH
Confidence 4333 2 233455568899999999999999 99999999999998763 4554 2333333334445566664
Q ss_pred HHHh
Q 048771 342 QLRQ 345 (814)
Q Consensus 342 ~~e~ 345 (814)
+|+.
T Consensus 176 ~~~~ 179 (189)
T 3qsz_A 176 HLRQ 179 (189)
T ss_dssp HHTC
T ss_pred Hhhh
Confidence 5543
No 87
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=97.90 E-value=0.00021 Score=73.98 Aligned_cols=176 Identities=16% Similarity=0.216 Sum_probs=112.0
Q ss_pred cchHHHHHHHHHHHHHHhcCC---CcceeeCCCCCCCCCccceeec---cCCCcceeeeeeeEEe-echhHHHHHhcCCC
Q 048771 156 AGLLSIAEETLTEFLSKATGT---AVEWVQMPGMKPGPDSVGIVAI---SHGCSGVAARACGLVG-LEPTRVAEILKDRP 228 (814)
Q Consensus 156 ~~l~~lA~~Am~Ell~la~~~---eplWi~~~g~k~g~d~~~~~~~---~~~~~~eAsR~~glV~-~~~~~LVe~lmD~~ 228 (814)
..+.++++..+.|.+..+... ...|-.... +.| +.++-. ..|...-.-|..+.|. ..+..+.+.|+|.+
T Consensus 22 ~~~~~~~~~~~~e~l~~~~~~~~~~~~W~~~~~-~~g---v~vy~~~~~~~g~~~~~~K~~~~~~~~~~~~v~~~l~d~~ 97 (255)
T 2e3n_A 22 HRFVQKVEEMVQNHMTYSLQDVGGDANWQLVVE-EGE---MKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVD 97 (255)
T ss_dssp CTTHHHHHHHHHHHHHHTTSCCTTCTTEEEEEE-ETT---EEEEEECCEETTEECCCEEEEEEEETCCHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEe-CCC---EEEEEEEcCCCCceeeeEEEEEEEcCCCHHHHHHHHhCcc
Confidence 456777778888877777642 356866421 112 111110 0111101346666665 78999999999977
Q ss_pred C------------------CCc-eee----eccccccCceeeEEEeeccc----CC--CcEEEEEeeccCCCCCCCCCCC
Q 048771 229 R------------------GSA-ILY----ALTTLAPARDFWLLRYTSVL----ED--GSLVVCERSLKNIQNGPTMPPV 279 (814)
Q Consensus 229 ~------------------~G~-~M~----a~SpLvp~Re~~fLRyckq~----~~--G~waVvDvSld~~~~~~~~~~~ 279 (814)
. +++ ..| +|.| +..|||.++|++++. ++ +.|+|+..|++.- ..|+.
T Consensus 98 ~r~~Wd~~~~~~~vle~i~~~~~i~y~~~~~p~p-~s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~----~~P~~ 172 (255)
T 2e3n_A 98 VRNDWETTIENFHVVETLADNAIIIYQTHKRVWP-ASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHD----SAPLN 172 (255)
T ss_dssp GHHHHCCSEEEEEEEEEEETTEEEEEEEECCCTT-SCCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCT----TSCCC
T ss_pred hHhhhhhhcceeEEEEEcCCCCEEEEEEeecCCC-cCCceeEEEEEEEeccccccCCCCEEEEEEeccCCC----CCCCC
Confidence 5 223 223 2566 589999999999887 33 5999999999843 34455
Q ss_pred CCccceee---cCcceEEeeCCC--------CceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHHH-HHH
Q 048771 280 QHFVRAEM---LPSGYLIRPCEG--------GGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALR-QLR 344 (814)
Q Consensus 280 ~~~~r~~r---lPSGclIq~~~n--------G~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~Lr-~~e 344 (814)
..++|... +.+|++|++..+ +.|+||++-|++..- .+|. -+++.....+.-..+..|| +++
T Consensus 173 ~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~iP~---~lvn~~~~~~~~~~l~~L~k~v~ 245 (255)
T 2e3n_A 173 NRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-WAPA---SVLRAVAKREYPKFLKRFTSYVQ 245 (255)
T ss_dssp SSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-CCCH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-ccCH---HHHHHHHhccccHHHHHHHHHHH
Confidence 57899995 679999998733 579999999999764 4664 3444444445555666664 454
No 88
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=97.55 E-value=0.00064 Score=59.33 Aligned_cols=105 Identities=10% Similarity=-0.067 Sum_probs=79.7
Q ss_pred cCCCeEeecCCCC-CceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCc
Q 048771 705 HHTDAVMCCSLKA-LPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRP 783 (814)
Q Consensus 705 ~~p~avl~h~~~~-dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grr 783 (814)
+.|.+|+..+.+. +-.++|+|.++.++|+++.+++.+.+...-..+.........+.++...|-.....-....+.|+.
T Consensus 5 ~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~ 84 (128)
T 3t50_A 5 FTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSGEA 84 (128)
T ss_dssp CCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCE
T ss_pred cCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCCCCE
Confidence 4788888887654 679999999999999999999999997766655555555556666666665444444556788998
Q ss_pred EEEceeEEeEeecCCCceEEEEEeccC
Q 048771 784 VSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 784 f~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
++++ ..+-.+.|++|...|...++.+
T Consensus 85 ~~~~-~~~~~i~~~~g~~~~~~~~~~D 110 (128)
T 3t50_A 85 FWNR-LHISPVHNANGRLQHFVSSQLD 110 (128)
T ss_dssp EEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEE-EEEEEEECCCCCEEEEEEEEEE
Confidence 8874 4566778999999888777754
No 89
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=97.53 E-value=0.00079 Score=56.73 Aligned_cols=105 Identities=8% Similarity=-0.010 Sum_probs=77.1
Q ss_pred cCCCeEeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCc
Q 048771 705 HHTDAVMCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRP 783 (814)
Q Consensus 705 ~~p~avl~h~~~-~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grr 783 (814)
+.|.+|+..+.. ++-.++|+|.++.++|+++.+++.+.+...-..+..+......+.++.+.|-.....-....+.|+.
T Consensus 5 ~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 84 (115)
T 4eet_B 5 FIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKSGKK 84 (115)
T ss_dssp CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCE
T ss_pred cCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCCCCE
Confidence 467887777653 2679999999999999999999999997666655555555555666666654333333446788998
Q ss_pred EEEceeEEeEeecCCCceEEEEEeccC
Q 048771 784 VSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 784 f~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
++++ ..+-.+.|++|...|...++.+
T Consensus 85 ~~~~-~~~~~~~~~~g~~~~~~~~~~D 110 (115)
T 4eet_B 85 FWNL-LHLQPVRDQKGELQYFIGVQLD 110 (115)
T ss_dssp EEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEE-EEEEEEECCCCCEEEEEEEEEe
Confidence 8874 5666788999999888777654
No 90
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=97.52 E-value=0.0014 Score=54.93 Aligned_cols=112 Identities=8% Similarity=-0.079 Sum_probs=85.1
Q ss_pred hHHHHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCe
Q 048771 696 SESILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGG 774 (814)
Q Consensus 696 ~~~~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 774 (814)
.+..++.+++ .|.+|+..+. +-.+.|+|.++.++|+++-+++.+.+...-..+..+......+.++.+.|-...+.-
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~--~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDL--QGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGEI 82 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEET--TCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHHhhcCceEEEECC--CCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccceE
Confidence 3455677766 7888888774 558999999999999999999999998855566666666666777777776554444
Q ss_pred eEEcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 775 ICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 775 vRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
......|+.++++ ..+-.+.|++|...|...++.+
T Consensus 83 ~~~~~~g~~~~~~-~~~~~~~~~~g~~~~~~~~~~D 117 (124)
T 3lyx_A 83 RMLHKDGHIGWIE-SMCVPIYGENYQMVGALGINRD 117 (124)
T ss_dssp EEECTTSCEEEEE-EEEEEEECSTTCEEEEEEEEEE
T ss_pred EEEccCCCEEEEE-EEEEEEECCCCCEEEEEEEEec
Confidence 4567788888774 4667778999999988777754
No 91
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=97.46 E-value=0.001 Score=60.80 Aligned_cols=111 Identities=5% Similarity=-0.072 Sum_probs=83.1
Q ss_pred HHHHHh-cCCCeEeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeE
Q 048771 699 ILKNLW-HHTDAVMCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGIC 776 (814)
Q Consensus 699 ~~~~L~-~~p~avl~h~~~-~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 776 (814)
.++.++ +.|.+|+..+.+ +|-.++|+|.++.++|+++.+++.+.+...-..+..+......+.++...|-...+.-..
T Consensus 36 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 115 (166)
T 3ue6_A 36 SLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTSVCLLN 115 (166)
T ss_dssp HHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceEEEEEE
Confidence 345554 489998888763 367899999999999999999999999776665655555555566666666544444455
Q ss_pred EcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 777 LSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 777 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
..+.|+.++++ ..+--+.|++|...|...+|.+
T Consensus 116 ~~~~g~~~~~~-~~~~~i~~~~g~~~~~~~~~~D 148 (166)
T 3ue6_A 116 YRQDGTTFWNL-FFVAGLRDSKGNIVNYVGVQSK 148 (166)
T ss_dssp ECTTSCEEEEE-EEEEEEECTTSCEEEEEEECCB
T ss_pred EcCCCCEEEEE-EEEEeeeCCCCCEEEEEEEEEe
Confidence 67899999885 4566678999999998888765
No 92
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=97.36 E-value=0.0013 Score=57.47 Aligned_cols=103 Identities=7% Similarity=-0.004 Sum_probs=70.3
Q ss_pred CCeEeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCcEE
Q 048771 707 TDAVMCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPVS 785 (814)
Q Consensus 707 p~avl~h~~~-~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~ 785 (814)
+++|+-.+.. +|-.++|+|.++.+|++|+-+|+++-+.+.-..+....+..+.+.++.+.|-.....-....+.|+.|+
T Consensus 3 ~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~ 82 (109)
T 1n9l_A 3 RHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFW 82 (109)
T ss_dssp SCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEE
T ss_pred ccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEEE
Confidence 5566666644 567899999999999999999999987655444433333333344444444333223345679999998
Q ss_pred EceeEEeEeecCCCceEEEEEeccC
Q 048771 786 YERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 786 i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
++- .+=-+.|++|...+...++.+
T Consensus 83 ~~~-~~~pi~d~~G~~~~~v~~~~D 106 (109)
T 1n9l_A 83 NLL-TVTPIKTPDGRVSKFVGVQVD 106 (109)
T ss_dssp EEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEE-EEEEEECCCCCEEEEEEEEEe
Confidence 865 455678999998887776644
No 93
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=97.32 E-value=0.0012 Score=61.77 Aligned_cols=111 Identities=9% Similarity=-0.022 Sum_probs=82.1
Q ss_pred HHHHHhc-CCCeEeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeE
Q 048771 699 ILKNLWH-HTDAVMCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGIC 776 (814)
Q Consensus 699 ~~~~L~~-~p~avl~h~~~-~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 776 (814)
.++.++. .|++|+..+.+ +|=.++|.|.++.++|+++-+++.+.+...-..+..+......+.++.+.|-.....-..
T Consensus 8 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 87 (176)
T 4hia_A 8 KIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVVLRN 87 (176)
T ss_dssp HHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEEEEE
Confidence 3455554 88888887765 347899999999999999999999999776666666555566666777666544444445
Q ss_pred EcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 777 LSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 777 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
..+.|+.|+++ ..+--+.|++|...|...++.+
T Consensus 88 ~~~dG~~~~~~-~~~~pi~~~~g~~~~~~~~~~D 120 (176)
T 4hia_A 88 YRANDEPFDNL-LFLHPVGGRPDAPDYFLGSQFE 120 (176)
T ss_dssp ECTTCCEEEEE-EEEEEESSBTTBCSEEEEEEEE
T ss_pred EcCCCCEEEEE-EEEEEeeCCCCCeEEEEEEEEE
Confidence 67899999875 3555677899998887777654
No 94
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=97.29 E-value=0.0023 Score=56.23 Aligned_cols=108 Identities=13% Similarity=0.001 Sum_probs=73.7
Q ss_pred HHHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCe--
Q 048771 698 SILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGG-- 774 (814)
Q Consensus 698 ~~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G-- 774 (814)
..++.++. +|++|+..+. +=.+.|.|+++.++|+|+-+|+++.+...-..+..+......+.++.++|-. +.|
T Consensus 5 ~~~~~~~~~~~~~i~~~d~--~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~e~ 80 (120)
T 2gj3_A 5 EIFRQTVEHAPIAISITDL--KANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKP--WSGVL 80 (120)
T ss_dssp HHHHHHHHHCSSEEEEECT--TCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCC--EEEEE
T ss_pred HHHHHHHHhCCCeEEEECC--CCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCC--EEEEE
Confidence 45566654 8999888764 5689999999999999999999998755443333333333344445555432 223
Q ss_pred eEEcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 775 ICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 775 vRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
....+.|+.|+++- .+=.+.|++|...+...++.+
T Consensus 81 ~~~~~dG~~~~~~~-~~~pi~~~~g~~~~~v~~~~D 115 (120)
T 2gj3_A 81 VNRRKDKTLYLAEL-TVAPVLNEAGETIYYLGMHRD 115 (120)
T ss_dssp EEECTTSCEEEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEcCCCCEEEEEE-EEEEEECCCCCEEEEEEEecc
Confidence 34578999988754 455677999998887766654
No 95
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=97.21 E-value=0.0016 Score=65.71 Aligned_cols=112 Identities=10% Similarity=-0.025 Sum_probs=84.8
Q ss_pred HHHHHHhc-CCCeEeecCCCC-CceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCee
Q 048771 698 SILKNLWH-HTDAVMCCSLKA-LPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGI 775 (814)
Q Consensus 698 ~~~~~L~~-~p~avl~h~~~~-dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 775 (814)
..++.++. .|++|+..+.+. |=.++|.|.++.++|+|+-+|+.+.+...-..+.........+.++.+.|-.....-.
T Consensus 63 ~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~ 142 (258)
T 3p7n_A 63 QWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVEIL 142 (258)
T ss_dssp HHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEEEEE
Confidence 44666655 899998887654 6689999999999999999999999987766666555555566666666654444445
Q ss_pred EEcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 776 CLSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 776 Riss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
...+.|..|+++- .+-.+.|++|...|...++.+
T Consensus 143 ~~~~dG~~~~~~~-~~~pi~d~~g~~~~~v~~~~D 176 (258)
T 3p7n_A 143 NYKKDGTPFRNAV-LVAPIYDDDDELLYFLGSQVE 176 (258)
T ss_dssp EECTTSCEEEEEE-EEEEEECTTSCSEEEEEEEEE
T ss_pred EEcCCCCEEEEee-EEEEEEcCCCCEEEEEEEeee
Confidence 5788999998853 556688999999888777754
No 96
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=97.21 E-value=0.00097 Score=56.24 Aligned_cols=109 Identities=6% Similarity=-0.069 Sum_probs=75.5
Q ss_pred HHHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeE
Q 048771 698 SILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGIC 776 (814)
Q Consensus 698 ~~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 776 (814)
+.++.++. .|.+|+..+ .+=.+.|+|+++.++|+++-+++.+.+..--. |..++.....+.++.+.+-.....-..
T Consensus 3 ~~~~~~~~~~~~~i~~~d--~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFD--REMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEEDCF 79 (114)
T ss_dssp HHHHHHHHTCSSEEEEEE--TTCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHHhcCCceEEEEc--CCcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeeeEE
Confidence 44566655 788888776 46789999999999999999999998876555 444455556666766644333222234
Q ss_pred EcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 777 LSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 777 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
..+.|+.++++ ..+-.+.|++|...|...++.+
T Consensus 80 ~~~~g~~~~~~-~~~~p~~~~~g~~~~~~~~~~D 112 (114)
T 3luq_A 80 VRADGRTQWLR-WEVRPWYEGEGRVGGVVIFTED 112 (114)
T ss_dssp EC--CCEEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EcCCCcEEEEE-EEEEEeECCCCCEEEEEEEEee
Confidence 56778877764 3455678999999888777654
No 97
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=97.19 E-value=0.0031 Score=53.05 Aligned_cols=110 Identities=9% Similarity=0.023 Sum_probs=77.7
Q ss_pred HHHHhc-CCCeEeecC-CCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEE
Q 048771 700 LKNLWH-HTDAVMCCS-LKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICL 777 (814)
Q Consensus 700 ~~~L~~-~p~avl~h~-~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 777 (814)
++.++. .|.+|+..+ ...+-.+.|.|+++.++|+++-+++.+.+...-..+.........+..+...|-.....-..+
T Consensus 8 ~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (130)
T 2z6d_A 8 LKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLNY 87 (130)
T ss_dssp HHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcceeEEEEE
Confidence 455554 788887776 225678999999999999999999999887666555554554455555566554333233345
Q ss_pred cCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 778 SSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 778 ss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
.+.|+.+++ ...+..+.|++|...|...++.+
T Consensus 88 ~~~g~~~~~-~~~~~~~~~~~g~~~~~~~~~~D 119 (130)
T 2z6d_A 88 KKDGTPFWN-LLTVTPIKDDQGNTIKFIGMQVE 119 (130)
T ss_dssp CTTSCEEEE-EEEEEEEECTTSCEEEEEEEEEE
T ss_pred cCCCcEEEE-EEEEEEEECCCCCeeEEEEEEec
Confidence 677888777 45667788999999888777754
No 98
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=97.14 E-value=0.0023 Score=58.25 Aligned_cols=113 Identities=11% Similarity=0.033 Sum_probs=82.0
Q ss_pred HHHHHHHhc-CCCeEeecCCCC-CceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCe
Q 048771 697 ESILKNLWH-HTDAVMCCSLKA-LPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGG 774 (814)
Q Consensus 697 ~~~~~~L~~-~p~avl~h~~~~-dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 774 (814)
+..++.++. .|.+|+..+.+. +..++|+|.++.++|+++-+++.+.+...-..+..+......+.++...|-.....-
T Consensus 24 ~~~~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (162)
T 3sw1_A 24 AQLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCREVL 103 (162)
T ss_dssp HHHHHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCcceE
Confidence 455666655 788888776543 229999999999999999999999988766666555555556666666665444344
Q ss_pred eEEcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 775 ICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 775 vRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
..+.+.|+.++++ ..+-.+.|++|...|...++.+
T Consensus 104 ~~~~~~g~~~~~~-~~~~~i~~~~g~~~~~~~~~~D 138 (162)
T 3sw1_A 104 RNYRKDGSAFWNE-LSITPVKSDFDQRTYFIGIQKD 138 (162)
T ss_dssp EEECTTCCEEEEE-EEEEEEECSSSSCEEEEEEEEE
T ss_pred EEECCCCCEEEEE-EEEEEeecCCCCEEEEEEEEEe
Confidence 4457888888774 4566678899998888777654
No 99
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=97.09 E-value=0.0049 Score=50.28 Aligned_cols=93 Identities=9% Similarity=-0.048 Sum_probs=63.6
Q ss_pred CCceeEcccHHHHHhhccCHHHhhcCc--cccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCcEEEceeEEeEe
Q 048771 717 ALPVFTFANQAGLDMLETTLVALQDIT--LEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKV 794 (814)
Q Consensus 717 ~dP~f~yaN~aaL~l~e~~w~el~~lp--sr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l 794 (814)
+|-.+.|+|+++.++|+++-+++.+.+ ...-..+.........+.++...|-.....-....+.|+.++++ ..+-.+
T Consensus 12 ~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~ 90 (110)
T 1byw_A 12 ENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCL-VDVVPV 90 (110)
T ss_dssp SSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEE-EEEEEE
T ss_pred CCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEEEEE-EEEEEe
Confidence 467899999999999999999999988 55554444433333444455555543333333457788888774 345567
Q ss_pred ecCCCceEEEEEeccC
Q 048771 795 LNEEETAHCICFMFIN 810 (814)
Q Consensus 795 ~d~~g~~~gqAa~F~~ 810 (814)
.|++|...|...++.+
T Consensus 91 ~~~~g~~~~~~~~~~D 106 (110)
T 1byw_A 91 KNEDGAVIMFILNFEV 106 (110)
T ss_dssp ECTTCCEEEEEEEEEE
T ss_pred ecCCCCEEEEEEEEEe
Confidence 7889998887776654
No 100
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=97.02 E-value=0.0054 Score=53.13 Aligned_cols=102 Identities=12% Similarity=0.087 Sum_probs=77.4
Q ss_pred cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCcE
Q 048771 705 HHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPV 784 (814)
Q Consensus 705 ~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf 784 (814)
+++++|+-++. |=.|+|.|.++.++|+|+-+|+.+.+..--..|.+++.-.+.+.++.+.|-.....=--+.+.|+.+
T Consensus 7 ~~~~~i~~~d~--~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~ 84 (117)
T 3f1p_A 7 DSKTFLSEHSM--DMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGGEEEEEECT--TCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEE
T ss_pred CCccEEEEECC--CceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEE
Confidence 35667776654 6689999999999999999999999887777788888888888888887766544322347889988
Q ss_pred EEceeEEeEeecC-CCceEEEEEecc
Q 048771 785 SYERAVAWKVLNE-EETAHCICFMFI 809 (814)
Q Consensus 785 ~i~~a~vW~l~d~-~g~~~gqAa~F~ 809 (814)
+++- .+--+.|+ +|...+...++.
T Consensus 85 w~~~-~~~~~~d~~~g~~~~iv~~~~ 109 (117)
T 3f1p_A 85 WLET-QGTVIYNPRNLQPQCIMCVNY 109 (117)
T ss_dssp EEEE-EEEEEEETTTTEEEEEEEEEE
T ss_pred EEEE-eeEEEECCCCCCceEEEEEee
Confidence 8854 44456777 788777665553
No 101
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=96.99 E-value=0.0049 Score=55.54 Aligned_cols=106 Identities=10% Similarity=0.024 Sum_probs=71.8
Q ss_pred HhcCCCeEeecCC-CCCceeEcccHHHHHhhccCHHHhhcCccccccCccc-----------HHHHhhhhHHHHHhcccc
Q 048771 703 LWHHTDAVMCCSL-KALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHG-----------RKALFAEFPQIMQQGFAC 770 (814)
Q Consensus 703 L~~~p~avl~h~~-~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~-----------r~er~~lL~~v~~qG~~~ 770 (814)
++.++.+|+..+. ..+=.++|+|+++.+||+++-+|+.+.+...-..+.. ..+....+.++..+|-..
T Consensus 31 ~~~~~~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (149)
T 3d72_A 31 PVDTSVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEV 110 (149)
T ss_dssp SCCTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCCE
T ss_pred hhcCCccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCce
Confidence 4556677777653 2466899999999999999999999998765544431 333333444445554433
Q ss_pred CCCeeEEcCCCCcEEEceeEEeEeecCCCceEEEEEecc
Q 048771 771 LQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFI 809 (814)
Q Consensus 771 ~y~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~ 809 (814)
...-..+.+.|+.++++- .+--+.|++|...|...++.
T Consensus 111 ~~e~~~~~~dG~~~~~~~-~~~~i~~~~g~~~~~v~~~~ 148 (149)
T 3d72_A 111 QVEVVNFKKNGQRFVNFL-TMIPVRDETGEYRYSMGFQC 148 (149)
T ss_dssp EEEEEEECTTCCEEEEEE-EEEEEECTTSSEEEEEEECC
T ss_pred EEEEEEECCCCCEEEEEE-EEEEEEcCCCCEEEEEEEEe
Confidence 333334578999988853 45567899999988777664
No 102
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=96.88 E-value=0.0022 Score=56.11 Aligned_cols=105 Identities=11% Similarity=0.066 Sum_probs=67.0
Q ss_pred HHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcc-cHHHHhhhhHHHHHhccccCCCeeEE
Q 048771 700 LKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDH-GRKALFAEFPQIMQQGFACLQGGICL 777 (814)
Q Consensus 700 ~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~-~r~er~~lL~~v~~qG~~~~y~GvRi 777 (814)
++.++. +|.+|+. + .+=.+.|+|+++.+||+++-+++.+.+...-..+. ........+.++.++|-.....-...
T Consensus 5 ~~~~~~~~~~~i~~-~--~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 81 (120)
T 3mqq_A 5 YKTAFHLAPIGLVL-S--RDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMK 81 (120)
T ss_dssp HHHHHHHCSSEEEE-E--ETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEEE
T ss_pred HHHHHhcCCceEEE-e--cCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEEEE
Confidence 556665 8888853 3 36789999999999999999999999876554332 22222333334444443222233346
Q ss_pred cCCCCcEEEceeEEeEeecCCCceEEEEEecc
Q 048771 778 SSMGRPVSYERAVAWKVLNEEETAHCICFMFI 809 (814)
Q Consensus 778 ss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~ 809 (814)
.+.|+.|+++- ....++.+|...|...+|.
T Consensus 82 ~~dG~~~~~~~--~~~~~~~~~~~~~~v~~~~ 111 (120)
T 3mqq_A 82 RAGGELFWCHV--TGRALDRTAPLAAGVWTFE 111 (120)
T ss_dssp CTTSCEEEEEE--EEEESSTTSTTSSEEEEEE
T ss_pred eCCCCEEEEEE--EEEECCCCCCceeEEEEEE
Confidence 78999998863 3455677766555555553
No 103
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=96.83 E-value=0.0077 Score=53.07 Aligned_cols=90 Identities=10% Similarity=0.041 Sum_probs=60.8
Q ss_pred HHHHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCee
Q 048771 697 ESILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGI 775 (814)
Q Consensus 697 ~~~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 775 (814)
++.++.+|+ +|++|+..+. +=.|.|.|+++.+||+|+-+|+.+.+...-.++..+......+..+...+ ...+.-.
T Consensus 10 e~~~~~l~e~~~d~i~~~d~--~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~ 86 (117)
T 2r78_A 10 SNAYRALFEHAIDGIFIMDA--EGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGE-PLREERT 86 (117)
T ss_dssp HHHHHHHHHHCSSEEEEECT--TSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTSHHHHHHHHHHTTC-CEEEEEE
T ss_pred HHHHHHHHhcCCceEEEECC--CCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchhHHHHHHHHHHcCC-cEEEEEE
Confidence 556777776 8999988764 45899999999999999999999987654333322222223444444333 2223344
Q ss_pred EEcCCCCcEEEcee
Q 048771 776 CLSSMGRPVSYERA 789 (814)
Q Consensus 776 Riss~Grrf~i~~a 789 (814)
.+.+.|+.|+++-.
T Consensus 87 ~~~kdG~~~~v~~~ 100 (117)
T 2r78_A 87 VWTRNGDQLTVELS 100 (117)
T ss_dssp EECTTSCEEEEEEE
T ss_pred EEecCCCEEEEEEE
Confidence 56899999888643
No 104
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=96.75 E-value=0.014 Score=49.85 Aligned_cols=110 Identities=7% Similarity=-0.007 Sum_probs=71.6
Q ss_pred HHHHhcCCCeEeecCCCC-CceeEcccHHHHHhhccCHHHhhcCc--cccccCcccHHHHhhhhHHHHHhccccCCCeeE
Q 048771 700 LKNLWHHTDAVMCCSLKA-LPVFTFANQAGLDMLETTLVALQDIT--LEKIFDDHGRKALFAEFPQIMQQGFACLQGGIC 776 (814)
Q Consensus 700 ~~~L~~~p~avl~h~~~~-dP~f~yaN~aaL~l~e~~w~el~~lp--sr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 776 (814)
.+.|-+.|.+|+..+... +=.+.|+|+++.++|+++-+++.+.+ ...-..+.........+.++...|-.....=..
T Consensus 22 ~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (138)
T 2l0w_A 22 IRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIAF 101 (138)
T ss_dssp HHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEEE
T ss_pred HHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEEE
Confidence 333334788888877532 56899999999999999999999988 555444444433334444444444322222223
Q ss_pred EcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 777 LSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 777 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
+.+.|+.++++ ..+--+.|++|...|...+|.+
T Consensus 102 ~~~~g~~~~~~-~~~~~~~~~~g~~~~~~~~~~D 134 (138)
T 2l0w_A 102 YRKDGSCFLCL-VDVVPVKNEDGAVIMFILNFEV 134 (138)
T ss_dssp ECTTSCEEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred ECCCCCEEEEE-EEEEEEeCCCCCEEEEEEEEEe
Confidence 46788887774 3444567888998887766644
No 105
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=96.66 E-value=0.012 Score=52.22 Aligned_cols=89 Identities=13% Similarity=0.049 Sum_probs=64.0
Q ss_pred HHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCC----Ce
Q 048771 700 LKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQ----GG 774 (814)
Q Consensus 700 ~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y----~G 774 (814)
++.++. .|++|+..+. +=.+.|.|.|+.+||+|+-+|+++.+...-..+..+......+.+....|-.... .-
T Consensus 18 ~~~l~~~~~d~i~~~d~--~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 95 (130)
T 1d06_A 18 LRSILDTVPDATVVSAT--DGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKRIIGIDRVV 95 (130)
T ss_dssp HHHHHTTCSSEEEEEET--TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTSCEEE
T ss_pred HHHHHhhCcCeEEEECC--CCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhcCCccccCCeeEE
Confidence 455655 8999888764 5579999999999999999999999876655555555555666666666543211 11
Q ss_pred eEEcCCCCcEEEceeE
Q 048771 775 ICLSSMGRPVSYERAV 790 (814)
Q Consensus 775 vRiss~Grrf~i~~a~ 790 (814)
..+.+.|+.|+++-.+
T Consensus 96 ~~~~kdG~~~~~~~~~ 111 (130)
T 1d06_A 96 SGQRKDGSTFPMKLAV 111 (130)
T ss_dssp EEECTTSCEEEEEEEE
T ss_pred EEEeCCCCEEEEEEEE
Confidence 3468999999987543
No 106
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=96.65 E-value=0.014 Score=51.94 Aligned_cols=101 Identities=11% Similarity=-0.052 Sum_probs=64.0
Q ss_pred cCCCeEeecCCCC-CceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCc
Q 048771 705 HHTDAVMCCSLKA-LPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRP 783 (814)
Q Consensus 705 ~~p~avl~h~~~~-dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grr 783 (814)
+.|++|+..+.+. |=.+.|.|+++.+||+|+-+|+++.+...-..+.........+.+..++|-...+.-....+.|+.
T Consensus 7 ~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~ 86 (132)
T 2pr5_A 7 HVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTM 86 (132)
T ss_dssp CCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCE
T ss_pred cCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEecCCCe
Confidence 4788888877543 558999999999999999999999876544333332332334444555554332233346789999
Q ss_pred EEEceeEEeEeecCCCceEEEEEec
Q 048771 784 VSYERAVAWKVLNEEETAHCICFMF 808 (814)
Q Consensus 784 f~i~~a~vW~l~d~~g~~~gqAa~F 808 (814)
|+++-.+ =.+.|++ ..+...++
T Consensus 87 ~~~~~~~-~~~~~~~--~~~~~~~~ 108 (132)
T 2pr5_A 87 FWNELNI-DPMEIED--KTYFVGIQ 108 (132)
T ss_dssp EEEEEEE-EEEEETT--EEEEEEEE
T ss_pred eeeEEEE-EeccCCC--eeEEEEEE
Confidence 9886433 2344554 44444444
No 107
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=96.57 E-value=0.0051 Score=56.12 Aligned_cols=110 Identities=6% Similarity=0.014 Sum_probs=77.4
Q ss_pred HHHHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCee
Q 048771 697 ESILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGI 775 (814)
Q Consensus 697 ~~~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 775 (814)
++.++.++. .|.+|+..+ .+|=.++|.|.++.++|+++ ++.+.+..--..+..+......+.++.+.|-...+...
T Consensus 16 ~~~~~~~~~~~~~~i~~~d-~~~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (158)
T 3k3c_A 16 AEDVRRIFEHIPAILVGLE-GPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEW 92 (158)
T ss_dssp HHHHHHHHHHCSSEEEEEE-TTTTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHhcCCceEEEEE-CCCcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCcccccce
Confidence 445666665 888887776 24668999999999999999 88888876666565555666788888887765443334
Q ss_pred EE--cCC---CCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 776 CL--SSM---GRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 776 Ri--ss~---Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
++ ... |+..++ ...+--+.|++|...|...++.+
T Consensus 93 ~~~~~~~~~~g~~~~~-~~~~~pi~~~~g~~~g~~~~~~D 131 (158)
T 3k3c_A 93 RLQTDYDGSGVEERYF-DFVVTPRRRADGSIEGVQLIVDD 131 (158)
T ss_dssp EEEEESSSSCEEEEEE-EEEEEEEECTTSCEEEEEEEEEE
T ss_pred eEEeccCCCCcceEEE-EEEEEEeECCCCCEEEEEEEEEe
Confidence 33 322 444444 34555678999999998887754
No 108
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=96.51 E-value=0.024 Score=48.82 Aligned_cols=105 Identities=7% Similarity=-0.013 Sum_probs=74.5
Q ss_pred cCCCeEeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCc
Q 048771 705 HHTDAVMCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRP 783 (814)
Q Consensus 705 ~~p~avl~h~~~-~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grr 783 (814)
..|.+|+..+.. ++-.+.|+|.++.++|+++-+++.+.+...-..+..+......+.++...|-.....-....+.|+.
T Consensus 10 ~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 89 (146)
T 2v0u_A 10 RIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKK 89 (146)
T ss_dssp GSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCE
T ss_pred cCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEEEEecCCcE
Confidence 367777776652 2568999999999999999999999988766656555555555556666654443344455778887
Q ss_pred EEEceeEEeEeecCCCceEEEEEeccC
Q 048771 784 VSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 784 f~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
+++. ..+-.+.|++|...|...++.+
T Consensus 90 ~~~~-~~~~~~~~~~g~~~~~~~~~~D 115 (146)
T 2v0u_A 90 FWNL-FHLQPMRDQKGDVQYFIGVQLD 115 (146)
T ss_dssp EEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEE-EEEEEeECCCCCEEEEEEEEee
Confidence 7774 4555677899998887776644
No 109
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=96.49 E-value=0.0058 Score=58.49 Aligned_cols=111 Identities=6% Similarity=0.017 Sum_probs=79.1
Q ss_pred hHHHHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCe
Q 048771 696 SESILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGG 774 (814)
Q Consensus 696 ~~~~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 774 (814)
.++.++.++. .|++|+..+. .|-.+.|+|.++.++|+++ ++.+.+..--..+..+......+.++.+.|-...+..
T Consensus 35 ~~~~l~~l~~~~~~~i~~~d~-~~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 111 (185)
T 3kx0_X 35 AAEDVRRIFEHIPAILVGLEG-PDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSE 111 (185)
T ss_dssp CHHHHHHHHHHCSSEEEEEET-TTTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEEEE
T ss_pred hHHHHHHHHhcCCceEEEEEC-CCcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcccccc
Confidence 3456777765 8999887762 4679999999999999999 8888887666655555555667888888886655444
Q ss_pred eEEcCC-----CCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 775 ICLSSM-----GRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 775 vRiss~-----Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
+++... |+..++ ...+--+.|++|...|...++.+
T Consensus 112 ~~~~~~~~~~gg~~~~~-~~~~~pi~~~~g~~~g~~~~~~D 151 (185)
T 3kx0_X 112 WRLQTDYDGSGVEERYF-DFVVTPRRRADGSIEGVQLIVDD 151 (185)
T ss_dssp EEEC--------CCEEE-EEEEEEEECTTSCEEEEEEEEEE
T ss_pred eeEEeeccCCCCccEEE-EEEEEEEECCCCCEEEEEEEEEe
Confidence 555221 566665 34555678999999998877754
No 110
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=96.43 E-value=0.14 Score=51.79 Aligned_cols=150 Identities=16% Similarity=0.207 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHHHHHhhhccCCCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCC
Q 048771 362 PAALRALSQRLSRGFNEAVNGFTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVP 441 (814)
Q Consensus 362 ~~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvp 441 (814)
.+.++++|+..+..|-.-+.. ..+|..... .++|+|..+...+ .+|-++ ++..-+ ++|
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~--~~~W~~~~~--~~gv~v~~~~~~~---------------~~~~~~--k~~~~v-~~~ 78 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRD--TAGWKICRE--GNGVSVSWRPSVE---------------FPGNLY--RGEGIV-YGT 78 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CSSCEEEEC--CSSEEEEEEECSS---------------SSSEEE--EEEEEE-SSC
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CCCCEEEEe--CCCEEEEEEccCC---------------CCCcEE--EEEEEE-CCC
Confidence 347999999999988876643 478998753 5678998876531 023333 555566 899
Q ss_pred hHHHHHHH--hh--hccchhccccchhhHHhhhcCCCCCCCCCcCCccceEEecccccCCCCceEEEEEeecCCCCCCCC
Q 048771 442 PAILLRFL--RE--HRSEWADNNIDVYSAAAIKVGPCSLPGSRVGTFGSQVILPLAHTIEHEEFMEVIKLEGVGHSPEDA 517 (814)
Q Consensus 442 p~~lf~FL--Rd--~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~ 517 (814)
|+.||++| .| .|.+||.... ....+..|. .. ..|++.-. .+.-..-
T Consensus 79 ~~~v~~~l~~~d~~~r~~Wd~~~~-----------------------~~~vle~i~----~~--~~i~~~~~-~~~~~~~ 128 (231)
T 2r55_A 79 LEEVWDCVKPAVGGLRVKWDENVT-----------------------GFEIIQSIT----DT--LCVSRTST-PSAAMKL 128 (231)
T ss_dssp HHHHHHHHCC--CCSHHHHCTTCS-----------------------EEEEEEECS----SS--EEEEEEEC-CCBTTTT
T ss_pred HHHHHHHHHhhCcchhhhhccccc-----------------------eeEEEEEcC----CC--EEEEEEEe-ccccCCc
Confidence 99999999 76 8999997411 133444442 11 22344211 1110123
Q ss_pred CCCCceEEEeeccCCCCCCCCceeE-EEEeeccCCC----CCC--CCccCCceEEecC
Q 048771 518 IMPRDMFLLQLCSGMDENAVGTCAE-LIFAPIDASF----ADD--APLLPSGFRIIPL 568 (814)
Q Consensus 518 ~~~~~~~iLQe~~~~de~~~Gs~s~-vVyAPvD~~~----~~~--v~LLPSGF~I~P~ 568 (814)
+-+||..+|.-+ ..+| .| ++ ++.-.||-+. +.+ +.++|+||.|-|+
T Consensus 129 v~~RDfv~~r~~-~~~~--~g--~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~ 181 (231)
T 2r55_A 129 ISPRDFVDLVLV-KRYE--DG--TISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPL 181 (231)
T ss_dssp BCCEEEEEEEEE-EECT--TS--CEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEEC
T ss_pred cCCCeEEEEEEE-EEcC--CC--EEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEe
Confidence 567888888875 3443 25 34 4566777542 233 3478999999993
No 111
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=96.40 E-value=0.01 Score=51.73 Aligned_cols=101 Identities=12% Similarity=0.094 Sum_probs=71.4
Q ss_pred cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHH-hccccCCCeeE-EcCCCC
Q 048771 705 HHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQ-QGFACLQGGIC-LSSMGR 782 (814)
Q Consensus 705 ~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~-qG~~~~y~GvR-iss~Gr 782 (814)
++|+.|+.++. |=.|+|.|.++.++++|+-+|+.+.+..--..|.+++.-...+.++.+ .|-...+. .| ..+.|+
T Consensus 10 ~~~d~i~~~d~--~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e-~r~~~~dG~ 86 (121)
T 3f1p_B 10 QPTRFISRHNI--EGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVM-FRFRSKNQE 86 (121)
T ss_dssp CCCEEEEEECT--TSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEE-EEEECTTSC
T ss_pred CCCceEEEECC--CceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEE-EEEEecCCC
Confidence 47888877764 668999999999999999999999987666667777766666666653 33222221 23 478899
Q ss_pred cEEEceeEEeEeecC-CCceEEEEEecc
Q 048771 783 PVSYERAVAWKVLNE-EETAHCICFMFI 809 (814)
Q Consensus 783 rf~i~~a~vW~l~d~-~g~~~gqAa~F~ 809 (814)
.++++- .+--+.|+ +|...+...++.
T Consensus 87 ~~w~~~-~~~~~~~~~~g~~~~iv~~~~ 113 (121)
T 3f1p_B 87 WLWMRT-SSFTFQNPYSDEIEYIICTNT 113 (121)
T ss_dssp EEEEEE-EEEEECCTTCCCCCEEEEEEE
T ss_pred EEEEEE-EEEEEECCCCCceeEEEEEeE
Confidence 888863 34446676 677777655553
No 112
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.37 E-value=0.02 Score=59.84 Aligned_cols=106 Identities=7% Similarity=-0.025 Sum_probs=79.2
Q ss_pred hcCCCeEeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCC
Q 048771 704 WHHTDAVMCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGR 782 (814)
Q Consensus 704 ~~~p~avl~h~~~-~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Gr 782 (814)
-+.|++|+..+.. +|=.++|+|+++.+|++|+-+|+.+.+...-..+..+.+....+.++.+.|-.....-....+.|+
T Consensus 18 ~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~ 97 (332)
T 2wkq_A 18 ERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGK 97 (332)
T ss_dssp GGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTCC
T ss_pred hcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEcCCCC
Confidence 4588998887652 267899999999999999999999998876655555555555556666665443333445678999
Q ss_pred cEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 783 PVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 783 rf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
.++++ ..+..+.|++|...|...++.+
T Consensus 98 ~~~~~-~~~~pi~d~~g~~~~~v~~~~D 124 (332)
T 2wkq_A 98 KFWNL-FHLQPMRDQKGDVQYFIGVQLD 124 (332)
T ss_dssp EEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEe-eEEEEeEcCCCCEEEEEEEecc
Confidence 99885 4667788999999998887754
No 113
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=96.26 E-value=0.043 Score=54.22 Aligned_cols=105 Identities=9% Similarity=-0.030 Sum_probs=73.8
Q ss_pred HhcCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCC
Q 048771 703 LWHHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGR 782 (814)
Q Consensus 703 L~~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Gr 782 (814)
+-+.+.+|+..+ .+-.++|.|.++.++++|+-+|+.+.+.+.-..+....+-...+.+..+.|-.....=....+.|+
T Consensus 117 ~~~~~~~i~~~d--~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~ 194 (227)
T 3ewk_A 117 MDANSEMILLTD--RAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGP 194 (227)
T ss_dssp HHTCCSEEEEEC--TTSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCS
T ss_pred HhcCcCeEEEEc--CCCcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCC
Confidence 345788877765 567899999999999999999999988766555544444445555555555433334445667776
Q ss_pred ------cEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 783 ------PVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 783 ------rf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
.|+++- .+=-+.|++|...|-..++.+
T Consensus 195 ~~~dg~~~~~~~-~~~pi~d~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 195 APHDAEDYWAEI-STTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp SSSCEEEEEEEE-EEEEEECSSSCEEEEEEEEEC
T ss_pred cCcccceEEEEE-EEEEEECCCCCEEEEEEEecC
Confidence 676643 455678999999988777653
No 114
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=96.04 E-value=0.037 Score=48.10 Aligned_cols=83 Identities=7% Similarity=0.036 Sum_probs=59.9
Q ss_pred CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCC-Ce---eEEcCCC
Q 048771 706 HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQ-GG---ICLSSMG 781 (814)
Q Consensus 706 ~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y-~G---vRiss~G 781 (814)
+|++|+..+ .+=.+.|.|.++.+||+|+-+|+++.+...-..+..+......+......|-.... .+ ....+.|
T Consensus 2 ~~d~i~~~d--~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG 79 (119)
T 2vv6_A 2 IPDAMIVID--GHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDG 79 (119)
T ss_dssp CCCEEEEEE--TTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTS
T ss_pred CcceEEEEC--CCCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCCC
Confidence 577887766 35689999999999999999999999877655555555555666676666543211 11 2357999
Q ss_pred CcEEEceeE
Q 048771 782 RPVSYERAV 790 (814)
Q Consensus 782 rrf~i~~a~ 790 (814)
+.|+++-.+
T Consensus 80 ~~~~~~~~~ 88 (119)
T 2vv6_A 80 TTFPMHLSI 88 (119)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEEEEE
Confidence 999987543
No 115
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=96.03 E-value=0.042 Score=46.51 Aligned_cols=83 Identities=22% Similarity=0.157 Sum_probs=57.2
Q ss_pred HHHHh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEc
Q 048771 700 LKNLW-HHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLS 778 (814)
Q Consensus 700 ~~~L~-~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRis 778 (814)
++.++ +.|++|+..+. +=.++|.|.++.++|+|+-+++.+++...-.++..... +..+.+.+. ..+.-....
T Consensus 15 ~~~~~~~~~~~i~~~d~--~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~----~~~~~~~~~-~~~e~~~~~ 87 (118)
T 3olo_A 15 AHYLINNAVEASFCLGD--NWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD----WEEIRQKNN-YTFKTRYRS 87 (118)
T ss_dssp HHHHHHHCSSEEEEECT--TSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC----HHHHHHHSE-EEEEEEEEC
T ss_pred HHHHHhcCCceEEEECC--CCcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH----HHHHHhcCc-EEEEEEEEc
Confidence 34454 48999988874 56899999999999999999999998765443322222 344444443 334445567
Q ss_pred CCCCcEEEcee
Q 048771 779 SMGRPVSYERA 789 (814)
Q Consensus 779 s~Grrf~i~~a 789 (814)
+.|+.++++-.
T Consensus 88 ~~g~~~~~~~~ 98 (118)
T 3olo_A 88 QSGRIFLVEMS 98 (118)
T ss_dssp TTCCEEEEEEE
T ss_pred cCCCEEEEEEE
Confidence 89998888643
No 116
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=95.99 E-value=0.046 Score=45.76 Aligned_cols=109 Identities=9% Similarity=-0.025 Sum_probs=70.8
Q ss_pred HHHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCcc--ccccCcccHHHHhhhhHHHHHhccccCCCe
Q 048771 698 SILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITL--EKIFDDHGRKALFAEFPQIMQQGFACLQGG 774 (814)
Q Consensus 698 ~~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lps--r~sae~~~r~er~~lL~~v~~qG~~~~y~G 774 (814)
..++.++. .|.+|+..+.+. =.+.|.|.++.++|+++-+++.+.+. .....|.++..-...+.++. .|-... .-
T Consensus 11 ~~~~~~~~~~~~~i~~~d~~~-~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~e 87 (125)
T 3eeh_A 11 RRVRELTEATNDILWEFTADL-SEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQSLM-DGESAD-VE 87 (125)
T ss_dssp HHHHHHHSCCCCEEEEEETTS-SCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHHHH-TTCCEE-EE
T ss_pred HHHHHHHhcCCceEEEEEcCC-CcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHHHH-cCCCcc-EE
Confidence 44555654 788888777642 37899999999999999999998873 33344555555555555533 332221 12
Q ss_pred eE-EcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 775 IC-LSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 775 vR-iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
+| ..+.|+.++++- .+-.+.|++|...+...++.+
T Consensus 88 ~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~~~~~~~D 123 (125)
T 3eeh_A 88 CRVNATEEYQRWVWI-QGEPITNDAGETVRVAGFARD 123 (125)
T ss_dssp EEECGGGTTCEEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEE-ecEEEECCCCCEEEEEEEEEe
Confidence 33 345677777643 455677889998887766643
No 117
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=95.96 E-value=0.03 Score=53.74 Aligned_cols=108 Identities=12% Similarity=0.086 Sum_probs=76.0
Q ss_pred HHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhcccc-------
Q 048771 699 ILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFAC------- 770 (814)
Q Consensus 699 ~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~------- 770 (814)
+++.++. .|++|+.-+. |=.++|.|+++.++++++-+|+++-+..--.++ .++.-.+.+.+|.+.|--.
T Consensus 23 ~l~~il~~~~~gi~v~D~--~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~~~~~~ 99 (152)
T 3mxq_A 23 LLSELLDQLSFALCIVRN--DYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFSSWEQK 99 (152)
T ss_dssp HHHHHHHHHCCEEEEEET--TSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEEECCSS
T ss_pred HHHHHHhcCCCCEEEEcC--CCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceeeecccc
Confidence 3455554 7888887764 678999999999999999999999887766666 5555566678888877421
Q ss_pred -----CCCeeEEcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 771 -----LQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 771 -----~y~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
...+-.+++.|+. .+.+.+++-|.|++|.+.|.++++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~-~~~~~ti~Pl~d~~G~v~gv~~ii~D 143 (152)
T 3mxq_A 100 PHLLPFKSSRPVSGEEEQ-MYQNLEVIPIHSEDGTIEHVCLCVYD 143 (152)
T ss_dssp SCSSCC----------CC-EEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred cccccccccCCCCCCCcE-EEEEEEEEEEECCCCCEEEEEEEEEE
Confidence 1112234555654 45588999999999999999988755
No 118
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=95.91 E-value=0.029 Score=55.51 Aligned_cols=93 Identities=8% Similarity=-0.076 Sum_probs=67.6
Q ss_pred CCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCcEEEceeEEeEeec
Q 048771 717 ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLN 796 (814)
Q Consensus 717 ~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~d 796 (814)
.+=.++|+|.++.+||+|+.+|+.+.+.+.-..+...++....+.+....|-...+.-....+.|+.|+++- .+=-+.|
T Consensus 7 ~~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~-~~~p~~d 85 (227)
T 3ewk_A 7 LQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDS-TIVPLMD 85 (227)
T ss_dssp TTCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEE-EEEEEEC
T ss_pred CCCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeee-EEEEEEc
Confidence 456799999999999999999999998776554444344444444555566554445556789999999854 5556789
Q ss_pred CCCceEEEEEeccC
Q 048771 797 EEETAHCICFMFIN 810 (814)
Q Consensus 797 ~~g~~~gqAa~F~~ 810 (814)
++|...|..+++.+
T Consensus 86 ~~g~~~~~~~~~~D 99 (227)
T 3ewk_A 86 NAGKPRQYISIRRD 99 (227)
T ss_dssp SSSCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEe
Confidence 99998887766543
No 119
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.85 E-value=0.027 Score=48.34 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=65.6
Q ss_pred HHHHh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEc
Q 048771 700 LKNLW-HHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLS 778 (814)
Q Consensus 700 ~~~L~-~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRis 778 (814)
...++ +.|.+|+..+.+ =.+.|.|++|.++|+++.+++.+.+...-..+... ....+.++.+.|-.....-+++.
T Consensus 9 ~~~il~~~~~~i~~~D~~--g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 84 (115)
T 3b33_A 9 PSAILNNMVTATLILDDG--LAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTFV 84 (115)
T ss_dssp HHHHHHHCSSEEEEECTT--CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEEE
T ss_pred HHHHHhhcCceEEEECCC--CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEEe
Confidence 34444 489999888764 47999999999999999999999876544433221 12345556655532111122332
Q ss_pred CCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 779 SMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 779 s~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
+.|+.+.++ ..+-.+.| +|. .|.-++|.+
T Consensus 85 ~~g~~~~~~-~~~~pi~~-~g~-~~~l~~~~D 113 (115)
T 3b33_A 85 VDGRPLMLE-VTVSPITW-QRQ-LMLLVEMRK 113 (115)
T ss_dssp ETTEEEEEE-EEEEEEEE-TTE-EEEEEEEEE
T ss_pred cCCCEEEEE-EEEEEeec-CCc-eEEEEEEEe
Confidence 568776653 45556677 776 566666643
No 120
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=95.82 E-value=0.029 Score=48.04 Aligned_cols=99 Identities=11% Similarity=0.028 Sum_probs=69.9
Q ss_pred cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCcE
Q 048771 705 HHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPV 784 (814)
Q Consensus 705 ~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf 784 (814)
+.|++|+..+. +=.++|+|.++.++|+++-+++.+.+..--..+..+......+.++...+.. .+.-....+.|+.+
T Consensus 7 ~~~~~i~~~d~--~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~ 83 (126)
T 3mjq_A 7 TIEDMILIINR--EGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEKKEGTSI 83 (126)
T ss_dssp GCSSEEEEEET--TSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEECTTSCEE
T ss_pred hCCceEEEEeC--CCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEccCCCEE
Confidence 47888888775 5689999999999999999999999877666777777777788888776655 22323346788888
Q ss_pred EEceeEEeEeecCCCceEEEEEecc
Q 048771 785 SYERAVAWKVLNEEETAHCICFMFI 809 (814)
Q Consensus 785 ~i~~a~vW~l~d~~g~~~gqAa~F~ 809 (814)
+++- .+..+.+ ++ ..|...++.
T Consensus 84 ~~~~-~~~~~~~-~~-~~~~~~~~~ 105 (126)
T 3mjq_A 84 PAKA-RIWQGKW-HN-EPCLFAIIK 105 (126)
T ss_dssp EEEE-EEEEEES-SS-SEEEEEEEE
T ss_pred EEEE-EEEeeeE-CC-ceEEEEEEE
Confidence 7753 3343333 22 344444443
No 121
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=95.71 E-value=0.028 Score=48.34 Aligned_cols=104 Identities=12% Similarity=0.095 Sum_probs=61.8
Q ss_pred HHHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeE
Q 048771 698 SILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGIC 776 (814)
Q Consensus 698 ~~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 776 (814)
..++.++. .|++|+..+. +=.++|.|.++.++|+++-+++.+.+..-..++...+.......++...|-.. ..
T Consensus 19 ~~~~~i~~~~~~~i~~~d~--~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 92 (125)
T 3fc7_A 19 KKFESLVSDSPDGIVHLTT--NGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT----RS 92 (125)
T ss_dssp -------CCSCCEEEEEET--TSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE----EE
T ss_pred HHHHHHHhcCCCeEEEEcC--CCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE----Ee
Confidence 34566665 7899888765 56999999999999999999999999877774444444444456666666322 22
Q ss_pred EcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 777 LSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 777 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
....| ..+++ ..+-.+ .++|...|...+|.+
T Consensus 93 ~~~~~-~~~~~-~~~~p~-~~~~~~~~~~~~~~D 123 (125)
T 3fc7_A 93 EDAVG-GRHYH-NQYIPV-DSHRKSDTFQLVSRD 123 (125)
T ss_dssp EEEET-TEEEE-EEEEES-STTTTTTEEEEEEEE
T ss_pred EcCCC-cEEEE-EEEEeE-ecCCCeEEEEEEEec
Confidence 22331 33333 222234 344555666555543
No 122
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=95.63 E-value=0.03 Score=47.48 Aligned_cols=108 Identities=8% Similarity=-0.108 Sum_probs=70.6
Q ss_pred HHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCc--cccccCcccHHHHhhhhHHHHHhccccCCCeeE
Q 048771 700 LKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDIT--LEKIFDDHGRKALFAEFPQIMQQGFACLQGGIC 776 (814)
Q Consensus 700 ~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lp--sr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 776 (814)
++.+.. +|.+|...+. +-.++|.|.++.++|+++-+++.+.+ ......|.+++.-...+.++.+.|-.....---
T Consensus 9 l~~~~~~~~~~i~~~d~--~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~~~ 86 (125)
T 3nja_A 9 LHTAESDAGIGSWVLHM--ESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEYRI 86 (125)
T ss_dssp --------CCEEEEEET--TTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEEEEEEE
T ss_pred HHHHHHhCCeeEEEEEc--CCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 444443 7888777665 45688999999999999999988722 222345667777777788888877543322223
Q ss_pred EcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 777 LSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 777 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
..+.|+.++++-... -+.|++|...+...++.+
T Consensus 87 ~~~~g~~~~~~~~~~-~~~~~~g~~~~~~g~~~D 119 (125)
T 3nja_A 87 VRPDGQVRELLERNH-IQRQASGQVDHLWGTVID 119 (125)
T ss_dssp ECTTSCEEEEEEEEE-EEECTTSCEEEEEEEEEE
T ss_pred ECCCCCEEEEEEeeE-EEECCCCCEEEEEEEEEe
Confidence 467788887765433 677889998887766644
No 123
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=95.61 E-value=0.053 Score=46.75 Aligned_cols=99 Identities=12% Similarity=0.093 Sum_probs=66.0
Q ss_pred hcCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhc-cccCCCeeEEcCCCC
Q 048771 704 WHHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQG-FACLQGGICLSSMGR 782 (814)
Q Consensus 704 ~~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG-~~~~y~GvRiss~Gr 782 (814)
-+.+++|+.++. +=.+.|.|.++.++|+|+-+|+.+.+..--..|.+++.....+.++.+.+ -...+.---+.+.|+
T Consensus 10 ~~~~~~i~~~d~--~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~ 87 (121)
T 2kdk_A 10 VKPTEFITRFAV--NGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAKDGS 87 (121)
T ss_dssp CCSSEEEEEECT--TSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEECSSSC
T ss_pred cCCccEEEEECC--CeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEcCCC
Confidence 347888887765 56899999999999999999999987654455666666666677666643 221111112578999
Q ss_pred cEEEceeEEeEeecCCC-ceEEEE
Q 048771 783 PVSYERAVAWKVLNEEE-TAHCIC 805 (814)
Q Consensus 783 rf~i~~a~vW~l~d~~g-~~~gqA 805 (814)
.++++- .+-.+.|++| ...+..
T Consensus 88 ~~~~~~-~~~~~~d~~~~~~~~~v 110 (121)
T 2kdk_A 88 FVTLKS-QWFSFTNPDTKELEYIV 110 (121)
T ss_dssp EEEEEE-EEEEEECCSSSCEEEEE
T ss_pred EEEEEE-EEEEEECCCCCeeeEEE
Confidence 988853 3334567654 444333
No 124
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=95.31 E-value=0.047 Score=46.17 Aligned_cols=110 Identities=9% Similarity=-0.020 Sum_probs=75.2
Q ss_pred HHHHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCcc--ccccCcccHHHHhhhhHHHHHhccccCCC
Q 048771 697 ESILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITL--EKIFDDHGRKALFAEFPQIMQQGFACLQG 773 (814)
Q Consensus 697 ~~~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lps--r~sae~~~r~er~~lL~~v~~qG~~~~y~ 773 (814)
++.++.+.. .|.+|...+. +-.++|.|.++.++|+++-+++.+.+. ..-..|.+++.-...+.++.+.|-.....
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~--~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~e 80 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDV--SGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTLV 80 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECT--TSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHHHhcCCceEEEEEc--CCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceEE
Confidence 455666665 7777766554 567889999999999999999877654 22345777777777777777766543333
Q ss_pred eeEEcCCCCcEEEceeEEeEeecCCCceEEEEEecc
Q 048771 774 GICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFI 809 (814)
Q Consensus 774 GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~ 809 (814)
---+.+.|+..+++. ..=-+.|++|...+...++.
T Consensus 81 ~r~~~~~g~~~w~~~-~~~~~~~~~g~~~~~~g~~~ 115 (118)
T 3icy_A 81 YRIVTPEGKLHWIED-HMRSSFSDDGLFSGIDGILC 115 (118)
T ss_dssp EEEECTTCCEEEEEE-EEEEEECTTSCEEEEEEEEE
T ss_pred EEEECCCCCEEEEEE-EEEEEECCCCCEEEEEEEEE
Confidence 223467888777754 33456789999887655543
No 125
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=94.88 E-value=0.086 Score=48.54 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=57.3
Q ss_pred HHHHh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccc------cC-
Q 048771 700 LKNLW-HHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFA------CL- 771 (814)
Q Consensus 700 ~~~L~-~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~------~~- 771 (814)
++.++ ..+++|+..+. +=.++|+|.||.+||+++-+++++.+...-..+..++.-..++.+..+.|-. ..
T Consensus 9 l~~i~~~~~d~i~~~D~--~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (129)
T 3mfx_A 9 IELFIQHLTEAMILVNA--NGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQHPA 86 (129)
T ss_dssp HHHHHTTCSSEEEEEET--TSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSCEEE
T ss_pred HHHHHhcCCceEEEECC--CCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccCCCc
Confidence 44454 48999998875 4589999999999999999999999977666665555444555544332211 00
Q ss_pred CCeeEEcCCCCcEEEce
Q 048771 772 QGGICLSSMGRPVSYER 788 (814)
Q Consensus 772 y~GvRiss~Grrf~i~~ 788 (814)
..-....+.|+.|+++-
T Consensus 87 ~E~~~~rkdG~~~~vel 103 (129)
T 3mfx_A 87 QETTLICASGKAKDVEL 103 (129)
T ss_dssp EEEEEECTTSCEEEEEE
T ss_pred eEEEEEcCCCCEEEEEE
Confidence 11123467899999864
No 126
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=94.83 E-value=0.1 Score=45.24 Aligned_cols=85 Identities=14% Similarity=0.017 Sum_probs=50.5
Q ss_pred HHHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhh--cCccccccCcccHHHHhhhhHHHHHhccccCCCe
Q 048771 698 SILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQ--DITLEKIFDDHGRKALFAEFPQIMQQGFACLQGG 774 (814)
Q Consensus 698 ~~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~--~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 774 (814)
..++.++. +|++|+..+. |=.+.|.|+++.++|+|+-+|+. +.+..--.. ++......+.++...+ ...+..
T Consensus 17 ~~~~~l~e~~~~~i~~~d~--~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~e~ 91 (126)
T 3bwl_A 17 SRLEALFENSPDMIDVLDA--DGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLSGFSVDE-RRKFEG 91 (126)
T ss_dssp HHHHHHHHHCSSEEEEECT--TCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHHTCCTTC-EEEEEE
T ss_pred HHHHHHHhhCCcEEEEEcC--CCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHHHHhcCC-CcceEE
Confidence 34566665 8999888764 56899999999999999999994 443221122 2222211111111111 111223
Q ss_pred eEEcCCCCcEEEc
Q 048771 775 ICLSSMGRPVSYE 787 (814)
Q Consensus 775 vRiss~Grrf~i~ 787 (814)
....+.|+.|+++
T Consensus 92 ~~~~~dG~~~~~~ 104 (126)
T 3bwl_A 92 LYERRDGSTMSVE 104 (126)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEEeCCCCEEEEE
Confidence 3458899999886
No 127
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=94.76 E-value=0.75 Score=47.19 Aligned_cols=173 Identities=21% Similarity=0.327 Sum_probs=95.6
Q ss_pred CCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHH-HHHHhhhccchhccccc
Q 048771 384 TDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAIL-LRFLREHRSEWADNNID 462 (814)
Q Consensus 384 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~l-f~FLRd~R~eWd~l~~~ 462 (814)
...+|..... .++|+|..++..+ + +.+-.-++..-+ +.+|+.+ +++|.| |.+||.....
T Consensus 48 ~~~gW~~~~~--~~gi~V~~k~~~~---~-------------~~~~~~K~~~~v-~~~~~~v~~~ll~d-r~~Wd~~~~~ 107 (237)
T 2pso_A 48 KFKGWVTCSS--TDNTDLAFKKVGD---G-------------NPLKLWKASVEV-EAPPSVVLNRVLRE-RHLWDEDFVQ 107 (237)
T ss_dssp HCCSCEEECC--SSSCEEEEECCCS---S-------------CCCCEEEEEEEE-SSCHHHHHHHHHHC-GGGTCTTBCC
T ss_pred CCCCCEEEec--CCCeEEEEEEcCC---C-------------CCcEEEEEEEEE-cCChHHHHHHHHhh-hhhHHhhhce
Confidence 4568987753 4789999887531 1 112334566667 5666555 578888 9999964111
Q ss_pred hhhHHhhhcCCCCCCCCCcCCccceEEecccccCCCCceEEEEEeecCCCCCCCCCCCCceEEEeeccCCCCCCCCceeE
Q 048771 463 VYSAAAIKVGPCSLPGSRVGTFGSQVILPLAHTIEHEEFMEVIKLEGVGHSPEDAIMPRDMFLLQLCSGMDENAVGTCAE 542 (814)
Q Consensus 463 ~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~~iLQe~~~~de~~~Gs~s~ 542 (814)
.+++-.|. ..+.|--...... -.+-+||..++.-. ..|. ..|+ -.
T Consensus 108 -----------------------~~vle~id----~~~~I~y~~~~~p-----~p~~~RDfv~~r~~-r~~~-~~g~-~v 152 (237)
T 2pso_A 108 -----------------------WKVVETLD----RQTEIYQYVLNSM-----APHPSRDFVVLRTW-KTDL-PKGM-CT 152 (237)
T ss_dssp -----------------------CEEEEEEE----TTEEEEEEEECCS-----SSCCCEEEEEEEEE-ESCC-GGGC-EE
T ss_pred -----------------------EEEEEEcC----CCcEEEEEEecCC-----CCcCCeEEEEEEEE-EEEC-CCCE-EE
Confidence 34444442 2222222222221 13567888888764 2331 1353 23
Q ss_pred EEEeeccCCC-C--CC--CCccCCceEEecCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCcceeeEeehh
Q 048771 543 LIFAPIDASF-A--DD--APLLPSGFRIIPLDSGKETSSPNRTLDLASALEIGPAGNRATNNYSTNSTCMRSVMTIAFEF 617 (814)
Q Consensus 543 vVyAPvD~~~-~--~~--v~LLPSGF~I~P~~~~~dg~~~~~tldlas~le~g~~~~~~~~~~~~~~~~~gslLTvaFQ~ 617 (814)
++...|+-++ | .+ +..+|+||.|-|++ .++|.+|.-+|+
T Consensus 153 i~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~------------------------------------~~~t~vt~~~~~ 196 (237)
T 2pso_A 153 LVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCG------------------------------------SGKSRLTHICRI 196 (237)
T ss_dssp EEEEECCCTTCCCCSSEECCEEEEEEEEEECS------------------------------------TTCEEEEEEEEE
T ss_pred EEEEcccCCCCCCCCcEEEEEeccEEEEEECC------------------------------------CCCEEEEEEEEe
Confidence 3344555431 1 12 55778888888831 135667766665
Q ss_pred cccccchhhHHHHHHHhHHHHHHHHHHHHHHcC
Q 048771 618 AFESHMQEHVATMARQYVRSIISSVQRVALALS 650 (814)
Q Consensus 618 l~~~~~~~sva~~~~~~v~~v~~tvq~I~~Al~ 650 (814)
=.....-..+ ++-+......++.+++.++.
T Consensus 197 Dp~G~iP~~l---n~~~~~~~~~~l~~LR~~~~ 226 (237)
T 2pso_A 197 DLKGHSPEWY---SKGFGHLCAAEVARIRNSFQ 226 (237)
T ss_dssp CCSSSCTTTT---TTHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCchHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 5544333322 33345555678999999885
No 128
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=94.37 E-value=0.22 Score=44.58 Aligned_cols=98 Identities=12% Similarity=-0.032 Sum_probs=63.9
Q ss_pred HHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhcccc----CCCe
Q 048771 700 LKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFAC----LQGG 774 (814)
Q Consensus 700 ~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~----~y~G 774 (814)
++.++. .|.+|+..+ .+=.++|.|.++.++|+++-+++.+.+......+..+......+..+...+... ...-
T Consensus 42 ~~~~l~~~~~~i~~~d--~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (167)
T 1v9y_A 42 FFPALEQNMMGAVLIN--ENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSREL 119 (167)
T ss_dssp HHHHHHTCSSEEEEEC--TTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------CEE
T ss_pred HHHHHHhCCCCEEEEC--CCCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCcccccceEE
Confidence 455554 788888866 455899999999999999999999998877776665555556666666555331 2222
Q ss_pred eEEcCCCCcEEEceeEEeEeecCCCce
Q 048771 775 ICLSSMGRPVSYERAVAWKVLNEEETA 801 (814)
Q Consensus 775 vRiss~Grrf~i~~a~vW~l~d~~g~~ 801 (814)
....+.|+.++++-.. -.+ +++|..
T Consensus 120 ~~~~~~g~~~~~~~~~-~~~-~~~g~~ 144 (167)
T 1v9y_A 120 QLEKKDGSKIWTRFAL-SKV-SAEGKV 144 (167)
T ss_dssp EEECTTSCEEEEEEEE-EEE-EETTEE
T ss_pred EEEcCCCcEEEEEEEE-EEE-ecCCCE
Confidence 3356778887775332 233 556654
No 129
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=94.35 E-value=0.03 Score=48.31 Aligned_cols=82 Identities=17% Similarity=0.110 Sum_probs=52.2
Q ss_pred CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHH-Hhcccc---CCCeeEEcCCC
Q 048771 706 HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIM-QQGFAC---LQGGICLSSMG 781 (814)
Q Consensus 706 ~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~-~qG~~~---~y~GvRiss~G 781 (814)
.+++|+..+.+ +=.+.|+|++|.+||+|+-+|+.+.+...-..+..++....+..... ..|... .+.-....+.|
T Consensus 7 ~~~~i~~~d~~-~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG 85 (114)
T 1ll8_A 7 FNKAIFTVDAK-TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISRSG 85 (114)
T ss_dssp TTCEEEEEETT-TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECCTTC
T ss_pred CCceEEEEECC-CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHHHHHHHHHhhccCCcceeccCcEEEEEecCC
Confidence 45678777643 14799999999999999999999998766555544443333333221 122211 11122357899
Q ss_pred CcEEEce
Q 048771 782 RPVSYER 788 (814)
Q Consensus 782 rrf~i~~ 788 (814)
+.|.++-
T Consensus 86 ~~~~v~~ 92 (114)
T 1ll8_A 86 EKIPVSV 92 (114)
T ss_dssp CCEEEEC
T ss_pred CEEEEEE
Confidence 9998864
No 130
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=94.15 E-value=0.63 Score=48.77 Aligned_cols=150 Identities=15% Similarity=0.265 Sum_probs=89.8
Q ss_pred CCCChhHHHHHHHHHHHHHhhhccCCCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccc
Q 048771 358 WGRRPAALRALSQRLSRGFNEAVNGFTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLL 437 (814)
Q Consensus 358 ~Gr~~~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL 437 (814)
+-+. +=+.|+.-.+.+...-. ..++|..... .++|+|..+... | .++-++.+-+
T Consensus 43 w~~~--~~~~l~~~n~~al~~l~---~~~gW~~~~~--~~gv~Vy~~~~~------------------~-~l~~k~~~~v 96 (258)
T 3fo5_A 43 WDPS--NQVYLSYNNVSSLKMLV---AKDNWVLSSE--ISQVRLYTLEDD------------------K-FLSFHMEMVV 96 (258)
T ss_dssp CCGG--GHHHHHHHHHHHHHHHH---TCSCCEEEEE--ETTEEEEEEECS------------------S-CEEEEEEEEE
T ss_pred cCcc--cceecccCCHHHHHhhh---ccCCCEEEec--CCCeEEEEEECC------------------C-ceEEEEEEEE
Confidence 4444 67777776666555332 5689987653 468999874321 1 4555777788
Q ss_pred cCCChHHHHHHHhh--hccchhccccchhhHHhhhcCCCCCCCCCcCCccceEEecccccCCCCceEEEEEeecCCCCCC
Q 048771 438 QNVPPAILLRFLRE--HRSEWADNNIDVYSAAAIKVGPCSLPGSRVGTFGSQVILPLAHTIEHEEFMEVIKLEGVGHSPE 515 (814)
Q Consensus 438 ~pvpp~~lf~FLRd--~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~ 515 (814)
++||+.||++|.| .|.+||.... ..+++..|. ..++|- ++... ...
T Consensus 97 -~~~~~~v~~~L~D~~~R~~WD~~~~-----------------------~~~vle~id----~~~ivY--~~~~p--~~~ 144 (258)
T 3fo5_A 97 -HVDAAQAFLLLSDLRQRPEWDKHYR-----------------------SVELVQQVD----EDDAIY--HVTSP--ALG 144 (258)
T ss_dssp -SSCHHHHHHHHHCGGGGGGTCTTCC-----------------------EEEEEEEEE----TTEEEE--EEEEC--CCT
T ss_pred -eCCHHHHHHHHhCchhHhHhhhhcc-----------------------EEEEEEEcC----CCeEEE--EEecC--Ccc
Confidence 8999999999997 7999996411 134444442 223443 44322 111
Q ss_pred CCCCCCceEEEeeccCCCCCCCCceeEEE-EeeccCC----CCCC--CCccCCceEEecC
Q 048771 516 DAIMPRDMFLLQLCSGMDENAVGTCAELI-FAPIDAS----FADD--APLLPSGFRIIPL 568 (814)
Q Consensus 516 ~~~~~~~~~iLQe~~~~de~~~Gs~s~vV-yAPvD~~----~~~~--v~LLPSGF~I~P~ 568 (814)
..+-+||..+|... ..++ ..|. .+|| .-.|+-+ -+.+ +..+|+||.|-|+
T Consensus 145 ~~v~~RDFV~lr~~-r~~~-~~G~-~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~ 201 (258)
T 3fo5_A 145 GHTKPQDFVILASR-RKPC-DNGD-PYVIALRSVTLPTHRETPEYRRGETLCSGFCLWRE 201 (258)
T ss_dssp TCSSCEEEEEEEEE-ECCS-STTC-CEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEE
T ss_pred CCCCCCEEEEEEEE-Eecc-CCCC-EEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEEC
Confidence 23567788887763 2221 2453 2443 3344433 2333 4699999999993
No 131
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=94.03 E-value=1.1 Score=45.08 Aligned_cols=144 Identities=17% Similarity=0.192 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHH
Q 048771 365 LRALSQRLSRGFNEAVNGFTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAI 444 (814)
Q Consensus 365 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~ 444 (814)
+.+.+...+..|.... ..+|..... .++|+|..+...+ .+|-+. ++..-+ ++||+.
T Consensus 26 ~~~~~~e~l~~~~~~~----~~~W~~~~~--~~gv~vy~~~~~~---------------~~~~~~--k~~~~v-~~~~~~ 81 (224)
T 1jss_A 26 ISTKLQNTLIQYHSIE----EDEWRVAKK--AKDVTVWRKPSEE---------------FNGYLY--KAQGVM-DDVVNN 81 (224)
T ss_dssp HHHHHHHHHHHHTTSC----GGGCEEEEE--ETTEEEEEEECSS---------------SSSEEE--EEEEEE-SSCHHH
T ss_pred HHHHHHHHHHHHhhhC----CCCCEEEEE--CCCEEEEEEeccC---------------CCceEE--EEEEEE-eCCHHH
Confidence 4444444444444322 568987643 3789999875431 123343 555556 899999
Q ss_pred HHHHHhh--hccchhccccchhhHHhhhcCCCCCCCCCcCCccceEEecccccCCCCceEEEEEeecCCCCCCCCCCCCc
Q 048771 445 LLRFLRE--HRSEWADNNIDVYSAAAIKVGPCSLPGSRVGTFGSQVILPLAHTIEHEEFMEVIKLEGVGHSPEDAIMPRD 522 (814)
Q Consensus 445 lf~FLRd--~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~ 522 (814)
||++|.| .|.+||.... ..+.+-+| +....|--....... -.-+-+||
T Consensus 82 v~~~l~d~~~r~~Wd~~~~-----------------------~~~vle~i----d~~~~I~y~~~~~~~---~~~v~~RD 131 (224)
T 1jss_A 82 VIDHIRPGPWRLDWDRLMT-----------------------SLDVLEHF----EENCCVMRYTTAGQL---LNIISPRE 131 (224)
T ss_dssp HHHHHSSSTTHHHHCSSEE-----------------------EEEEEEEC----STTEEEEEEEECCBT---TTTBCCEE
T ss_pred HHHHHhCccccccccccee-----------------------eEEEEEEc----CCCeEEEEEEccccc---CCCCCCCe
Confidence 9999998 8999996411 13444444 222223222221110 01256788
Q ss_pred eEEEeeccCCCCCCCCceeEEEEeeccCCC--CCC--CCccCCceEEec
Q 048771 523 MFLLQLCSGMDENAVGTCAELIFAPIDASF--ADD--APLLPSGFRIIP 567 (814)
Q Consensus 523 ~~iLQe~~~~de~~~Gs~s~vVyAPvD~~~--~~~--v~LLPSGF~I~P 567 (814)
.+++.... .++ .| .+++.-.||-++ +.+ +.++++||.|-|
T Consensus 132 fv~~r~~~-~~~--~~--~vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p 175 (224)
T 1jss_A 132 FVDFSYTV-GYE--EG--LLSCGVSVEWSETRPEFVRGYNHPCGWFCVP 175 (224)
T ss_dssp EEEEEEEE-EET--TE--EEEEEEECCCCCCCTTSEECEECSEEEEEEE
T ss_pred EEEEEEEE-EcC--Ce--EEEEEeeeecCCCCCCCEEEEecccEEEEEE
Confidence 88888642 221 22 455666676543 233 457888888888
No 132
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=93.52 E-value=1.4 Score=43.54 Aligned_cols=68 Identities=10% Similarity=0.248 Sum_probs=46.0
Q ss_pred HHHHhhhccC--CCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHh
Q 048771 373 SRGFNEAVNG--FTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLR 450 (814)
Q Consensus 373 ~~~F~~~v~~--s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLR 450 (814)
.+.+|..+.. ....+|..... .++|+|..+...+ .++..-++...++++||+.||++|.
T Consensus 13 f~~~~~~l~~~~~~~~~W~~~~~--~~~v~v~~~~~~~-----------------~~~~~~k~~~~i~~~~~~~v~~~l~ 73 (214)
T 1ln1_A 13 FWEACAELQQPALAGADWQLLVE--TSGISIYRLLDKK-----------------TGLYEYKVFGVLEDCSPTLLADIYM 73 (214)
T ss_dssp HHHTTHHHHSCCCTTTTCEEEEE--ETTEEEEEEEETT-----------------TTEEEEEEEEEETTSCHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCCcEEEEE--CCCeEEEEeccCC-----------------CCcEEEEEEEEECCCCHHHHHHHHc
Confidence 3444444332 24568988754 3579998876431 1244566777783499999999999
Q ss_pred h--hccchhcc
Q 048771 451 E--HRSEWADN 459 (814)
Q Consensus 451 d--~R~eWd~l 459 (814)
| .|.+||..
T Consensus 74 d~~~r~~Wd~~ 84 (214)
T 1ln1_A 74 DSDYRKQWDQY 84 (214)
T ss_dssp CHHHHHHHCTT
T ss_pred CHHHHHHHHHH
Confidence 7 89999964
No 133
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=93.31 E-value=2.3 Score=42.61 Aligned_cols=192 Identities=12% Similarity=0.175 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHH
Q 048771 365 LRALSQRLSRGFNEAVNGFTDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAI 444 (814)
Q Consensus 365 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~ 444 (814)
-.++++.-...+..-+. ..++|..... ..++|.|..++.. + .|.++ ++..-+ ++||+.
T Consensus 12 y~~~~~~~~~~~l~~~~--~~~gW~~~~~-~~~gv~vy~~~~~----~------------~g~~~--k~~~~v-~~~~~~ 69 (221)
T 3p0l_A 12 YLQQGEEAMQKALGILS--NQEGWKKESQ-QDNGDKVMSKVVP----D------------VGKVF--RLEVVV-DQPMER 69 (221)
T ss_dssp HHHHHHHHHHHHHHHHH--SCTTCEEEEE-CTTSCEEEEEECS----S------------SCEEE--EEEEEE-SSCHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCCCeEeee-cCCCcEEEEEEcC----C------------CceEE--EEEEEE-cCCHHH
Confidence 44555555555544443 3578988731 2356788887642 1 13333 556667 899999
Q ss_pred HHHHHh-h--hccchhccccchhhHHhhhcCCCCCCCCCcCCccceEEecccccCCCCceEEEEEeecCCCCCCCCCCCC
Q 048771 445 LLRFLR-E--HRSEWADNNIDVYSAAAIKVGPCSLPGSRVGTFGSQVILPLAHTIEHEEFMEVIKLEGVGHSPEDAIMPR 521 (814)
Q Consensus 445 lf~FLR-d--~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~ 521 (814)
||++|. | .|.+||.... ..+.+-.+.. +. .|+..... ..--.-+-+|
T Consensus 70 v~~~l~~d~~~r~~Wd~~~~-----------------------~~~vle~~~~----~t--~I~y~~~~-~~~~~~v~~R 119 (221)
T 3p0l_A 70 LYEELVERMEAMGEWNPNVK-----------------------EIKVLQKIGK----DT--FITHELAA-EAAGNLVGPR 119 (221)
T ss_dssp HHHHHTTTGGGTTTSCTTCS-----------------------EEEEEEECSS----SE--EEEEEEEC-C---CCSCCE
T ss_pred HHHHHHhccchhhhcCcchh-----------------------eEEEEEecCC----Ce--EEEEEeec-cccCCccCCc
Confidence 999995 4 8999996411 1344444422 22 23332111 1001135578
Q ss_pred ceEEEeeccCCCCCCCCceeEEEE-eeccCCC----CCC--CCccCCceEEecCCCCCCCCCCCcccccccccccCCCCC
Q 048771 522 DMFLLQLCSGMDENAVGTCAELIF-APIDASF----ADD--APLLPSGFRIIPLDSGKETSSPNRTLDLASALEIGPAGN 594 (814)
Q Consensus 522 ~~~iLQe~~~~de~~~Gs~s~vVy-APvD~~~----~~~--v~LLPSGF~I~P~~~~~dg~~~~~tldlas~le~g~~~~ 594 (814)
|..++.... .+ .| .+++. -.|+-+. +.+ +.++++||.|-|++ .
T Consensus 120 Dfv~~r~~~-~~---~~--~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~-----~------------------- 169 (221)
T 3p0l_A 120 DFVSVRCAK-RR---GS--TCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLA-----G------------------- 169 (221)
T ss_dssp EEEEEEEEE-EC---SS--CEEECCEECCCTTSCCCTTSEECEECSCEEEEEEET-----T-------------------
T ss_pred eEEEEEEEE-Ec---CC--eEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECC-----C-------------------
Confidence 888887642 33 23 24443 4455331 333 35789999999931 0
Q ss_pred CCCCCCCCCCCCCcceeeEeehhcccccchhhHHHHHHHhHHHHHHHHHHHHHHcC
Q 048771 595 RATNNYSTNSTCMRSVMTIAFEFAFESHMQEHVATMARQYVRSIISSVQRVALALS 650 (814)
Q Consensus 595 ~~~~~~~~~~~~~gslLTvaFQ~l~~~~~~~sva~~~~~~v~~v~~tvq~I~~Al~ 650 (814)
+ ..+|.+|.-+|+=.....-..+... -...++..+++.++.++.
T Consensus 170 ---~-------~~~t~vt~~~~~Dp~G~iP~~lvn~--~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 170 ---S-------PSKTKLTWLLSIDLKGWLPKSIINQ--VLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp ---E-------EEEEEEEEEECEECCSSCCHHHHHH--HHHHHHHHHHHHHHHHTC
T ss_pred ---C-------CCcEEEEEEEEecCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 0 1367888877776655433333221 113456678888888886
No 134
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=93.22 E-value=0.52 Score=41.40 Aligned_cols=98 Identities=12% Similarity=0.009 Sum_probs=62.8
Q ss_pred HHHH-hcCCCeEeecCCCCCceeEcccHHHHHhhc------------cCHHHhhcCccccccCcccHHHHhhhhHHHHHh
Q 048771 700 LKNL-WHHTDAVMCCSLKALPVFTFANQAGLDMLE------------TTLVALQDITLEKIFDDHGRKALFAEFPQIMQQ 766 (814)
Q Consensus 700 ~~~L-~~~p~avl~h~~~~dP~f~yaN~aaL~l~e------------~~w~el~~lpsr~sae~~~r~er~~lL~~v~~q 766 (814)
++.+ -+.|++|+..+. +=..+|.|+||.+||+ ++-+++++.+...-.... +....+ .+.
T Consensus 7 l~~il~~~~~gviv~D~--~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~~--~~~~~~----~~~ 78 (121)
T 4hi4_A 7 IASALDNVSANVMIADN--DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNP--AHQRHL----LAN 78 (121)
T ss_dssp HHHHHTTSSSEEEEEET--TCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSSH--HHHHHH----HHH
T ss_pred HHHHHhcCCccEEEEcC--CCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCCH--HHHHHH----HhC
Confidence 4444 457999999885 5589999999999997 677788887655443221 111122 222
Q ss_pred ccccCCCeeEEcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 767 GFACLQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 767 G~~~~y~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
.- .+....+...|+.|. ..+--+.|++|...|.-++|.+
T Consensus 79 ~~--~~~~~~~~~~~~~~~---~~~~pi~~~~g~~~g~v~~~~D 117 (121)
T 4hi4_A 79 LT--GVHKAELNLGGRRFS---LDVVPVFNDANARLGSAVQWTD 117 (121)
T ss_dssp CS--SCEEEEEEETTEEEE---EEEEEEECTTSCEEEEEEEEEE
T ss_pred cC--CCcEEEEEECCEEEE---EEEEEEECCCCCEEEEEEEEEE
Confidence 21 122234444566553 4555677899999999888865
No 135
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=93.16 E-value=2.4 Score=41.15 Aligned_cols=54 Identities=15% Similarity=0.428 Sum_probs=40.3
Q ss_pred CCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHHHHHhh--hccchhcc
Q 048771 386 EGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLRE--HRSEWADN 459 (814)
Q Consensus 386 ~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 459 (814)
++|..... .++|+|..+...+ ..+..-++...+ +.||+.+|++|.| .|.+||..
T Consensus 3 ~~W~~~~~--~~gv~v~~~~~~~-----------------~~~~~~k~~~~v-~~s~~~v~~~l~D~~~~~~W~~~ 58 (189)
T 3qsz_A 3 DGWSLAKD--AEGIKVYVRNVEG-----------------SPLREFRGEVRL-KAAADDVVKVLRDANAFRQWMPD 58 (189)
T ss_dssp CCCEEEEE--ETTEEEEEECCTT-----------------CSSCEEEEEEEE-SSCHHHHHHHHHCGGGGGGTSTT
T ss_pred CCCEEEEc--CCCEEEEEEeCCC-----------------CCeEEEEEEEEE-ECCHHHHHHHHHhHHHhhhHHHh
Confidence 58987753 4689999887541 013345667777 7999999999997 99999964
No 136
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=93.06 E-value=0.84 Score=35.79 Aligned_cols=93 Identities=6% Similarity=-0.088 Sum_probs=55.0
Q ss_pred CCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCcEEE
Q 048771 707 TDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPVSY 786 (814)
Q Consensus 707 p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i 786 (814)
|.+|+..+. +=.++|.|+++.++|+++-+++.+.+...- +.. .+....+.++.+.|... . ++.. .|...++
T Consensus 2 ~~~i~~~d~--~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~~-~~~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~ 72 (96)
T 3a0s_A 2 ETAIITLSK--DGRITEWNKKAEQLFGLKKENVLGRRLKDL--PDF-EEIGSVAESVFENKEPV--F-LNFY-KFGERYF 72 (96)
T ss_dssp CCEEEEEET--TSBEEEECHHHHHHHCCCHHHHTTSBGGGS--TTC-HHHHHHHHHHHHHTCCE--E-EEEE-EETTEEE
T ss_pred CceEEEEcC--CCCEeehhHHHHHHhCCCHHHhcCCCHHHC--cch-HHHHHHHHHHhccCCeE--E-EEEE-cCCcEEE
Confidence 456666654 457899999999999999999999876554 222 22333445555544322 1 2221 2222233
Q ss_pred ceeEEeEeecCCCc-eEEEEEecc
Q 048771 787 ERAVAWKVLNEEET-AHCICFMFI 809 (814)
Q Consensus 787 ~~a~vW~l~d~~g~-~~gqAa~F~ 809 (814)
...+-.+.|++|. ..|...+|.
T Consensus 73 -~~~~~p~~~~~~~~~~g~v~~~~ 95 (96)
T 3a0s_A 73 -NIRFSPFRNAKTQLLEGVIITID 95 (96)
T ss_dssp -EEEEEEEECTTTCCEEEEEEEEE
T ss_pred -EEEEEEeEcCCCCeeeEEEEEec
Confidence 3345556777654 567766664
No 137
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=92.41 E-value=0.39 Score=41.06 Aligned_cols=89 Identities=9% Similarity=0.003 Sum_probs=61.9
Q ss_pred CceeEcccHHHHHhhccCHHHhhcCcc--ccccCcccHHHHhhhhHHHHHhccccCCCeeE-EcCCCCcEEEceeEEeEe
Q 048771 718 LPVFTFANQAGLDMLETTLVALQDITL--EKIFDDHGRKALFAEFPQIMQQGFACLQGGIC-LSSMGRPVSYERAVAWKV 794 (814)
Q Consensus 718 dP~f~yaN~aaL~l~e~~w~el~~lps--r~sae~~~r~er~~lL~~v~~qG~~~~y~GvR-iss~Grrf~i~~a~vW~l 794 (814)
+-.|.|.|.+..++|+++-+++.+ +. ..-..|.+|+.-...+.++.+.|-.... =.| +.+.|+..+++. ..--+
T Consensus 13 ~~~~~~~n~~~~~l~G~~~~e~~~-~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~-e~r~~~~dG~~~w~~~-~~~~~ 89 (115)
T 3h9w_A 13 TMAFEYIGPQIEALLGWPQGSWKS-VEDWATRMHPEDQEWVVNFCVKQSECGVDHEA-DYRALHRDGHYVWIRD-VVHVV 89 (115)
T ss_dssp TTEEEEECTHHHHHHCSCGGGCCB-HHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEE-EEEEECTTSCEEEEEE-EEEEE
T ss_pred CCcEEEEChhHHHHhCCChHHccC-HHHHHHhcCHHHHHHHHHHHHHHHhcCCcccE-EEEEEcCCCCEEEEEE-EEEEE
Confidence 346999999999999999999988 32 2234577777777777777777752222 123 367888888754 44445
Q ss_pred ecCCCceEEEEEecc
Q 048771 795 LNEEETAHCICFMFI 809 (814)
Q Consensus 795 ~d~~g~~~gqAa~F~ 809 (814)
.|++|...+...+..
T Consensus 90 ~d~~G~~~~~~G~~~ 104 (115)
T 3h9w_A 90 RDDSGEVEALIGFMF 104 (115)
T ss_dssp ECTTSCEEEEEEEEE
T ss_pred ECCCCCEEEEEEEEe
Confidence 799999877665543
No 138
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=91.37 E-value=0.22 Score=43.62 Aligned_cols=62 Identities=10% Similarity=0.064 Sum_probs=49.0
Q ss_pred cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhcc
Q 048771 705 HHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGF 768 (814)
Q Consensus 705 ~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~ 768 (814)
..|++|+..+ .+=.++|.|+++.++|+++.+++.+.+..--.++..+......+.++.+.|-
T Consensus 20 ~~~~~i~~~D--~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (118)
T 3fg8_A 20 QGGLGFMALD--EDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGR 81 (118)
T ss_dssp CTTCEEEEEC--TTCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCC
T ss_pred hCCceEEEEC--CCCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCC
Confidence 3788888876 4668999999999999999999999987665555555556667777777664
No 139
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=90.75 E-value=9.8 Score=38.05 Aligned_cols=129 Identities=12% Similarity=0.171 Sum_probs=73.4
Q ss_pred CCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEEEEEEeccccCCChHHHH-HHHhh--hccchhcccc
Q 048771 385 DEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILL-RFLRE--HRSEWADNNI 461 (814)
Q Consensus 385 ~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl~A~tS~wL~pvpp~~lf-~FLRd--~R~eWd~l~~ 461 (814)
.++|..... ..++++|..+...+ .|.+. ++..-+ ++||+.|| ++|.| .|.+||....
T Consensus 41 ~~~W~~~~~-~~~g~~vy~~~~~~----------------~g~~~--k~~~~v-~~~~~~v~~~~~~d~~~r~~Wd~~~~ 100 (229)
T 1em2_A 41 EENWKFEKN-NEYGDTVYTIEVPF----------------HGKTF--ILKTFL-PCPAELVYQEVILQPERMVLWNKTVT 100 (229)
T ss_dssp GGGCEEEEE-CTTCCEEEEEEETT----------------TEEEE--EEEEEE-SSCHHHHHHHTTTCHHHHTTTCTTEE
T ss_pred CCCCEEEEe-cCCCCEEEEEecCC----------------CCceE--EEEEEe-cCCHHHHHHHHHhCccchhhcccccc
Confidence 468987742 23567887765431 13333 445556 89999999 88886 8999996411
Q ss_pred chhhHHhhhcCCCCCCCCCcCCccceEEecccccCCCCceEEEEEeecCCCCCCCCCCCCceEEEeeccCCCCCCCCcee
Q 048771 462 DVYSAAAIKVGPCSLPGSRVGTFGSQVILPLAHTIEHEEFMEVIKLEGVGHSPEDAIMPRDMFLLQLCSGMDENAVGTCA 541 (814)
Q Consensus 462 ~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~~iLQe~~~~de~~~Gs~s 541 (814)
..+.+-.|. .+..| +..+.. +.-..-+-+||.+++.-.. .++ + +-
T Consensus 101 -----------------------~~~vle~~~----~~t~I-~~~~~~--p~~~~~~~~RDfv~~r~~~-~~~---~-~~ 145 (229)
T 1em2_A 101 -----------------------ACQILQRVE----DNTLI-SYDVSA--GAAGGVVSPRDFVNVRRIE-RRR---D-RY 145 (229)
T ss_dssp -----------------------EEEEEEEET----TTEEE-EEEEEC--CBTTTTBCCEEEEEEEEEE-ECS---S-EE
T ss_pred -----------------------eEEEEEecC----CCeEE-EEEEec--CcCCCCcCCCeeEEEEEEE-EcC---C-EE
Confidence 134444442 22223 222221 1001235578888887643 332 2 24
Q ss_pred EEEEeeccCCC----CCC--CCccCCceEEecC
Q 048771 542 ELIFAPIDASF----ADD--APLLPSGFRIIPL 568 (814)
Q Consensus 542 ~vVyAPvD~~~----~~~--v~LLPSGF~I~P~ 568 (814)
+++...|+-+. +.+ +.++++||.|-|+
T Consensus 146 vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~ 178 (229)
T 1em2_A 146 LSSGIATSHSAKPPTHKYVRGENGPGGMIVLKS 178 (229)
T ss_dssp EEEEEECCCTTSCCCTTSEECEECSEEEEEEEC
T ss_pred EEEEecccCCCCCCCCCCEeeeecccEEEEEec
Confidence 56666776542 222 5578999999993
No 140
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=90.58 E-value=0.51 Score=41.79 Aligned_cols=48 Identities=33% Similarity=0.321 Sum_probs=26.9
Q ss_pred chhHHHhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 69 RRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 69 RRaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
||+|.|+++.+..++.....|..+|..| ..++.+|..|...|++-+..
T Consensus 28 rrSR~krk~r~~e~~~r~~~Le~EN~~L-------r~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 28 RKSRDKAKMRNLETQHKVLELTAENERL-------QKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3666677666666665555555555444 44455555555555555543
No 141
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=89.19 E-value=0.93 Score=37.64 Aligned_cols=45 Identities=29% Similarity=0.415 Sum_probs=27.3
Q ss_pred hhHHHhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 70 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 70 RaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
|++.|+++....++.+. +.|..+|..|..++..|+.|+..||+-+
T Consensus 16 R~R~KKk~~~~~le~~~-------~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 16 RYRQKKRAEQEALTGEC-------KELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665544 4555555555556666666777776654
No 142
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=89.03 E-value=0.83 Score=39.65 Aligned_cols=47 Identities=34% Similarity=0.359 Sum_probs=28.1
Q ss_pred chhHHHhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 69 RRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 69 RRaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
||+|.|+++....++... ..|..+|..|..++.+|..|+..|++-+.
T Consensus 28 krSR~krk~r~~e~~~r~-------~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 28 RKSRDKAKMRNLETQHKV-------LELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666655555544 44555555556666666667777776543
No 143
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=87.74 E-value=1.7 Score=47.03 Aligned_cols=96 Identities=9% Similarity=-0.035 Sum_probs=69.8
Q ss_pred EeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCcEEEcee
Q 048771 710 VMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPVSYERA 789 (814)
Q Consensus 710 vl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a 789 (814)
+.-|+ .|=.|+|.|.++.++++|+-+||++.+..--.-|.++..-...+.++.+.|-.....==.+.+.|.-+|++ +
T Consensus 254 ~~~~~--~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv~-~ 330 (361)
T 4f3l_A 254 TSRHS--LEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ-T 330 (361)
T ss_dssp EEEEC--TTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEEE-E
T ss_pred EEEEc--CCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEEE-E
Confidence 44444 36789999999999999999999999887666788887777778888888865332222457888888885 3
Q ss_pred EEeEeecC-CCceEEEEEec
Q 048771 790 VAWKVLNE-EETAHCICFMF 808 (814)
Q Consensus 790 ~vW~l~d~-~g~~~gqAa~F 808 (814)
..--+.|+ +|...+.-.+.
T Consensus 331 ~~~~v~~~~~g~~~~iv~~~ 350 (361)
T 4f3l_A 331 HYYITYHQWNSRPEFIVCTH 350 (361)
T ss_dssp EEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEEcCCCCCeeEEEEEE
Confidence 44445565 68877665543
No 144
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=87.58 E-value=0.74 Score=38.45 Aligned_cols=98 Identities=9% Similarity=-0.001 Sum_probs=59.7
Q ss_pred HHHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhcc---CHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCC
Q 048771 698 SILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLET---TLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQG 773 (814)
Q Consensus 698 ~~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~---~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~ 773 (814)
..++.+++ .|++|+..+. +=.++|.|++|.++|++ +-+++.+.+...-..+.. +.++.+.|-...
T Consensus 15 ~~~~~il~~~~~~i~~~d~--~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~-- 83 (118)
T 2w0n_A 15 EQRQAMLQSIKEGVVAVDD--RGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTPRR-- 83 (118)
T ss_dssp HHHHHHHHCCCCCCEEEBT--TTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCCCC--
T ss_pred HHHHHHHhhccccEEEECC--CCcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCceec--
Confidence 33455554 7888887764 45789999999999997 788888877654443321 445555554321
Q ss_pred eeEEcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 774 GICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 774 GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
...+...|+.|.+. +-.+.| +|...|...+|.+
T Consensus 84 ~~~~~~~~~~~~~~---~~p~~~-~g~~~g~v~~~~D 116 (118)
T 2w0n_A 84 DEEITIKDRLLLIN---TVPVRS-NGVIIGAISTFRD 116 (118)
T ss_dssp CCCEESSSCEECCC---EECCCC-SSCCCCEEECCCC
T ss_pred cEEEEECCEEEEEe---eceeee-CCEEEEEEEEEEe
Confidence 22233456544332 223345 7777776666654
No 145
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=87.58 E-value=2 Score=43.22 Aligned_cols=114 Identities=12% Similarity=0.073 Sum_probs=64.0
Q ss_pred HHhCCCCCCCCCCChHHHHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhh------------ccCHHHhhcCcccccc
Q 048771 682 CYLGVDLLKSSSEGSESILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDML------------ETTLVALQDITLEKIF 748 (814)
Q Consensus 682 ~~~G~~L~~~~~~~~~~~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~------------e~~w~el~~lpsr~sa 748 (814)
++....|++... ....++.++. .+.+|+.-+. |=..+|+|+++.+|| +++-+++++-+...-.
T Consensus 8 ~~~~~~~~~~~~--e~~~l~~iLd~~~~~vii~D~--~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~ 83 (233)
T 3vol_A 8 HHHSSGLVPRGS--HMARIKSALDNVSANVMIADN--DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFH 83 (233)
T ss_dssp ----------CT--HHHHHHHHHTTSSSEEEEEET--TSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGS
T ss_pred ccccccCCchHH--HHHHHHHHHhcCCCcEEEECC--CCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHc
Confidence 344455665422 3344444444 6999988775 669999999999999 5677777777655443
Q ss_pred CcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 749 DDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 749 e~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
.... ....+++. ....+ ...+...|+.| ..++=-+.|++|.+.|.-..|.+
T Consensus 84 ~~~~--~~~~~~~~-----~~~~~-~~~~~~~g~~~---~~~~~Pi~d~~G~~~g~v~~~~D 134 (233)
T 3vol_A 84 KNPA--HQRHLLAN-----LTGVH-KAELNLGGRRF---SLDVVPVFNDANERLGSAVQWTD 134 (233)
T ss_dssp SSHH--HHHHHHHT-----CCSCE-EEEEEETTEEE---EEEEEEEECTTCCEEEEEEEEEE
T ss_pred CCHH--HHHHHHHh-----cccce-eEEEEECCEEE---EEEEEEEECCCCCEEEEEEEEeh
Confidence 2211 11112221 11112 22343456543 56777788999999998888765
No 146
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=87.15 E-value=1.3 Score=39.60 Aligned_cols=78 Identities=9% Similarity=-0.042 Sum_probs=51.5
Q ss_pred cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeE-EcCCCCc
Q 048771 705 HHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGIC-LSSMGRP 783 (814)
Q Consensus 705 ~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR-iss~Grr 783 (814)
+.+++|+.++ .|=.|.|.|.++.++|+|+-+|+++.+..--..|.+++.-.+.+. +++-.. ..-.| +.+.|..
T Consensus 7 ~~~d~i~v~d--~~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~-~~e~r~~~kdG~~ 80 (111)
T 2vlg_A 7 TKTDIHAVLA--SNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLM-PCTFRFIKKDHTI 80 (111)
T ss_dssp --CCEEEEEC--TTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSS-CEEEEEECTTSCE
T ss_pred cCCCEEEEEc--CCCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCc-cEEEEEEcCCCCE
Confidence 4677887776 456899999999999999999999987644445666655444332 222111 11234 3688888
Q ss_pred EEEce
Q 048771 784 VSYER 788 (814)
Q Consensus 784 f~i~~ 788 (814)
++++-
T Consensus 81 ~wve~ 85 (111)
T 2vlg_A 81 VWVEA 85 (111)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88864
No 147
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=86.86 E-value=0.84 Score=37.61 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=25.6
Q ss_pred hhHHHhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 70 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 70 RaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
|++.|++.....++. +...+..+|..|..++..|+.|+..|++.+
T Consensus 15 k~R~rKk~~~~~Le~-------~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 15 KSRKRKLERIARLEE-------KVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444444444 455566666666677777777777777665
No 148
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=86.51 E-value=1.6 Score=36.13 Aligned_cols=45 Identities=24% Similarity=0.402 Sum_probs=24.0
Q ss_pred hhHHHhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 70 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 70 RaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
|++.|+++....++.+...|..+ |..|..++..|+.|...|+..+
T Consensus 16 rcR~rKk~~~~~Le~~v~~L~~~-------n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 16 KCRNRRRELTDTLQAETDQLEDE-------KSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554444444 4445555555555666665543
No 149
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=86.34 E-value=1.9 Score=35.35 Aligned_cols=45 Identities=27% Similarity=0.266 Sum_probs=28.6
Q ss_pred hhHHHhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 70 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 70 RaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
|++.|++.....++ .+.+.+..+|..|..++..|+.|+..|++.+
T Consensus 15 k~R~rKk~~~~~Le-------~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 15 RSRQKRKVWVQSLE-------KKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444 4556666667777777777888888888765
No 150
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=86.05 E-value=1.2 Score=52.10 Aligned_cols=106 Identities=13% Similarity=0.021 Sum_probs=75.7
Q ss_pred HHhcCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCC
Q 048771 702 NLWHHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMG 781 (814)
Q Consensus 702 ~L~~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~G 781 (814)
.+-.++..|+..+. +-.++|.|++..+|++++-+|+.+.+......+..++....+++.+. +|-.....=.-..+.|
T Consensus 523 lle~a~~~i~~~D~--~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~i~~~l~-~g~~~~~E~~~~~~dG 599 (635)
T 4eho_A 523 QVHASMQPVLITDA--EGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVAELID-HGRGWRGEVLLRGAGN 599 (635)
T ss_dssp HHHHCSSCCEEEET--TCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHHHHHHHH-HCCCBCCCCEECCSSS
T ss_pred HHHhCCCcEEEECC--CCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHHHHHHHH-cCCcEEEEEEEEccCC
Confidence 34458888888765 67899999999999999999999998776666666555555555444 4433222222345788
Q ss_pred CcEEEceeEEeEeecCCCceEEEEEeccCc
Q 048771 782 RPVSYERAVAWKVLNEEETAHCICFMFINW 811 (814)
Q Consensus 782 rrf~i~~a~vW~l~d~~g~~~gqAa~F~~W 811 (814)
+.|++.--. =-+.|++|++.|..++|.+=
T Consensus 600 ~~~~~~~~~-~pv~d~~G~v~g~v~i~~DI 628 (635)
T 4eho_A 600 RPLPLAVRA-DPVTRTEDQSLGFVLIFSDA 628 (635)
T ss_dssp SCEECCCCE-EEECSTTSSCCEEEECCCCC
T ss_pred cEEEEEEEE-EEEECCCCCEEEEEEEEEeC
Confidence 888875432 35789999999999988663
No 151
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=82.44 E-value=1.6 Score=41.16 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=55.8
Q ss_pred HHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEE
Q 048771 699 ILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICL 777 (814)
Q Consensus 699 ~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 777 (814)
.++.++. .|++|+..+. +=.+.|+|++|.++|+++-+++.+.|..--..+.. +.++.+.|-. ...+..+
T Consensus 81 ~l~~il~~~~~gvi~~D~--~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~ 150 (190)
T 2jhe_A 81 ALSALLEALPEPVLSVDM--KSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN-------FLRWLESEPQ-DSHNEHV 150 (190)
T ss_dssp HHHHHHHHCSSCEEEECT--TCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCC-------HHHHHHTCCC-SCEEEEE
T ss_pred HHHHHHHhCCCcEEEEcC--CCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCC-------HHHHHhcCCC-CCcceEE
Confidence 3455554 7899988875 56899999999999999999999988765554332 2334444421 1122333
Q ss_pred cCCCCcEEEceeEEeEeecCCCc
Q 048771 778 SSMGRPVSYERAVAWKVLNEEET 800 (814)
Q Consensus 778 ss~Grrf~i~~a~vW~l~d~~g~ 800 (814)
...|+.|.+. +-.+.+++|.
T Consensus 151 ~~~g~~~~~~---~~pi~~~~~~ 170 (190)
T 2jhe_A 151 VINGQNFLME---ITPVYLQDEN 170 (190)
T ss_dssp EETTEEEEEE---EEEETTTTEE
T ss_pred EECCeEEEEE---EEEEEecCCC
Confidence 3467666543 3334454554
No 152
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.16 E-value=5.4 Score=32.58 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 92 MNKLLMEENDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 92 ~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
....+..+.+.++.+-..|+.+...|++|+..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666666666666544
No 153
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.16 E-value=0.58 Score=39.80 Aligned_cols=43 Identities=21% Similarity=0.421 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccc
Q 048771 21 YTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQ 67 (814)
Q Consensus 21 ~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQ 67 (814)
.++.-.+.|+..|+..+.+....-..|+.+. +|+..|||-||-
T Consensus 13 ~~p~~~e~L~~Yy~~hk~L~EeDl~~L~~ks----kms~qqvkdwFa 55 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAHQQLRETDIPQLSQAS----RLSTQQVLDWFD 55 (70)
T ss_dssp CCCCCCHHHHHHHHHTCCCCTTHHHHHHHHT----TCCHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHhcccchhhHHHHHHHh----CCCHHHHHHHHH
Confidence 3444568999999999999999999999999 999999999994
No 154
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=78.89 E-value=3.4 Score=35.12 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=28.0
Q ss_pred HHHhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 048771 72 REKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYF 117 (814)
Q Consensus 72 K~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~L 117 (814)
+.+|.+....|+..-..+...+..+..++..|..++..|..||..+
T Consensus 24 ReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 24 RKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4445555555665556666666666666666666666666666554
No 155
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=78.41 E-value=5.3 Score=35.93 Aligned_cols=43 Identities=23% Similarity=0.237 Sum_probs=29.2
Q ss_pred HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 80 SRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 80 ~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
+.++.+|..++..........++|+.++.+|+.||.+|++|-+
T Consensus 47 s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 47 SRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555667788888999999999988765
No 156
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=78.12 E-value=6.2 Score=32.37 Aligned_cols=35 Identities=31% Similarity=0.391 Sum_probs=30.1
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 048771 86 NRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQH 120 (814)
Q Consensus 86 n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~e 120 (814)
-..|..-|..+.+|.+.++++++.|..||..||.+
T Consensus 29 iQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~q 63 (63)
T 2w6a_A 29 VQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQP 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhccC
Confidence 33467788999999999999999999999999853
No 157
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=77.31 E-value=6.1 Score=34.52 Aligned_cols=44 Identities=25% Similarity=0.247 Sum_probs=32.2
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 79 ASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 79 ~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
...++-+.+.|+.+|..+.++++.+......|+.||++|++|..
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34455566777777777777777777777778888888888765
No 158
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=77.29 E-value=9.3 Score=33.97 Aligned_cols=101 Identities=7% Similarity=-0.061 Sum_probs=65.1
Q ss_pred cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCc--cccccCcccHHHHhhhhHHHHHhccccCCCeeE-EcCCC
Q 048771 705 HHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDIT--LEKIFDDHGRKALFAEFPQIMQQGFACLQGGIC-LSSMG 781 (814)
Q Consensus 705 ~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lp--sr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR-iss~G 781 (814)
.++..|.-.+.. -..+|.|.+..++|+++-+++.+.. +.....|.+|+.-...+.++.+.|-..... .| +.+.|
T Consensus 17 ~~~~g~w~~d~~--~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~e-~r~~~~~G 93 (142)
T 3mr0_A 17 GASAGLWDWNPK--TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVE-YRVRTRSG 93 (142)
T ss_dssp HTTCEEEEECTT--TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCEEEE-EEEECTTS
T ss_pred hCCcEEEEEEcC--CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCceEEE-EEEECCCC
Confidence 367776655543 3467899999999999998876532 233346777777777777777766332211 23 36778
Q ss_pred CcEEEceeEEeEeecCCCceEEEEEecc
Q 048771 782 RPVSYERAVAWKVLNEEETAHCICFMFI 809 (814)
Q Consensus 782 rrf~i~~a~vW~l~d~~g~~~gqAa~F~ 809 (814)
...+++. ..--+.|++|...+...++.
T Consensus 94 ~~~w~~~-~~~~~~d~~g~~~~~~G~~~ 120 (142)
T 3mr0_A 94 DFRWIQS-RGQALWNSAGEPYRMVGWIM 120 (142)
T ss_dssp CEEEEEE-EEEEEECTTSCEEEEEEEEE
T ss_pred CEEEEEE-EEEEEECCCCCEEEEEEEEE
Confidence 8777743 33346799998877665553
No 159
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=75.75 E-value=3.6 Score=34.14 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=5.3
Q ss_pred hhHHHhHHHHHHHH
Q 048771 70 RCREKQRKEASRLQ 83 (814)
Q Consensus 70 RaK~Krrqe~~~l~ 83 (814)
|++.||++....|+
T Consensus 23 rsR~RK~~~~~~Le 36 (63)
T 2dgc_A 23 RSRARKLQRMKQLE 36 (63)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444433333333
No 160
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=73.61 E-value=15 Score=39.74 Aligned_cols=89 Identities=13% Similarity=0.174 Sum_probs=65.6
Q ss_pred CCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCC----CeeE-EcCCC
Q 048771 707 TDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQ----GGIC-LSSMG 781 (814)
Q Consensus 707 p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y----~GvR-iss~G 781 (814)
..+|.-|+ .|=.|+|.|.++.++++|+-+||++.+..--.-|.++..-.+.+.++.++|-..+. .=.| +.+.|
T Consensus 154 ~~fi~r~~--~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kdG 231 (339)
T 3rty_A 154 PKFAIRHT--ATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNG 231 (339)
T ss_dssp CEEEEEEE--TTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTTS
T ss_pred ceEEEEEC--CCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccCC
Confidence 34555665 46789999999999999999999999877777888888878888888888764321 1133 47888
Q ss_pred CcEEEceeEEeE-eecCCC
Q 048771 782 RPVSYERAVAWK-VLNEEE 799 (814)
Q Consensus 782 rrf~i~~a~vW~-l~d~~g 799 (814)
.-.|++ +-|+ +.|..+
T Consensus 232 ~~vWle--t~~~~~~np~s 248 (339)
T 3rty_A 232 CYVLLE--TEWTSFVNPWS 248 (339)
T ss_dssp CEEEEE--EEEEEEECTTT
T ss_pred CEEEEE--EEEEEEECCCC
Confidence 888885 3454 456543
No 161
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=72.66 E-value=5.6 Score=41.14 Aligned_cols=98 Identities=8% Similarity=-0.047 Sum_probs=58.9
Q ss_pred HHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeEEcC-
Q 048771 702 NLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSS- 779 (814)
Q Consensus 702 ~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss- 779 (814)
.++. .|++|+..+. |=.++|+|++|.++|+++.+++.+.+...-.++ ++....+.++.+.|--. -++.-.
T Consensus 12 ~i~~~~~~~i~~~d~--~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~ 83 (349)
T 3a0r_A 12 SILESLETAIITLSK--DGRITEWNKKAEQLFGLKKENVLGRRLKDLPDF---EEIGSVAESVFENKEPV---FLNFYKF 83 (349)
T ss_dssp SSGGGSSSEEEEEES--SSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT---THHHHHHHHHHHHCCCC---EEECCCB
T ss_pred HHHhhhcCeEEEECC--CCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh---hHHHHHHHHHHhcCCce---eeccccc
Confidence 3443 7899888775 568999999999999999999999877654222 22334445555544211 111111
Q ss_pred CCCcEEEceeEEeEeecCCCce-EEEEEeccC
Q 048771 780 MGRPVSYERAVAWKVLNEEETA-HCICFMFIN 810 (814)
Q Consensus 780 ~Grrf~i~~a~vW~l~d~~g~~-~gqAa~F~~ 810 (814)
.++.|. ..+-.+.|++|.. .|...++.+
T Consensus 84 ~~~~~~---~~~~~~~~~~~~~~~g~~~~~~D 112 (349)
T 3a0r_A 84 GERYFN---IRFSPFRNAKTQLLEGVIITIDD 112 (349)
T ss_dssp TTBCCE---EEEEEECCTTTTSSCEEEEEEEC
T ss_pred CceEEE---EEEEEEEcCCCceeeEEEEEEEe
Confidence 233333 2344456666654 576666654
No 162
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=72.52 E-value=15 Score=30.23 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhc
Q 048771 100 NDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 100 ~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
...|+.++..|..+|..|+.++.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~ 47 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIA 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555443
No 163
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=71.45 E-value=9.7 Score=33.63 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=36.5
Q ss_pred EEeeCCCCceEEEEEEeeeccCCCcCccchhhhchhHHHHHHHHHHHH-HHHHhhc
Q 048771 293 LIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAAL-RQLRQMA 347 (814)
Q Consensus 293 lIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~~L-r~~e~la 347 (814)
-+.+.++| |+|+|..+.+.....+..++.+++..-+-=+.+..+..| +++|+.+
T Consensus 92 ~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~~~ 146 (147)
T 2d4r_A 92 VFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAAS 146 (147)
T ss_dssp EEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45777887 999999988876444445566665444444677777888 4777654
No 164
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=70.18 E-value=6.1 Score=35.17 Aligned_cols=63 Identities=22% Similarity=0.176 Sum_probs=31.0
Q ss_pred CCCccceeeccccchhHHHhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 56 NIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 56 gL~~rQVkvWFQNRRaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
||+..+|.-+=|-||+ -|.+--...|+.. -..+...|..++..+..++++|+.||++++.|++
T Consensus 17 gls~eev~~lKq~RRt-lKNRgyAq~CR~K---r~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d 79 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRT-LKNRGYAQSCRYK---RVQQKHHLENEKTQLIQQVEQLKQEVSRLARERD 79 (90)
T ss_dssp TCCHHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh-hhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766554443 2332222222221 1123344555555555555555555555555544
No 165
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=69.46 E-value=14 Score=30.38 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 92 MNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 92 ~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
+...+..+.+.|+.+-..|+.+...|+.|+.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555543
No 166
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=66.37 E-value=20 Score=31.60 Aligned_cols=36 Identities=8% Similarity=-0.049 Sum_probs=21.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcccc
Q 048771 90 TAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTT 125 (814)
Q Consensus 90 ~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~~ 125 (814)
+.....+..+...|+.|=.+|+.+.+.|+.|+..+.
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556666666666666666666666554
No 167
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=62.85 E-value=7.6 Score=39.60 Aligned_cols=58 Identities=17% Similarity=0.364 Sum_probs=39.2
Q ss_pred CCCCceeecCCCCcceEEEEecCCCcccCcccccCCCCCCCCceEE-EEEEeccccCCChHHHHHHHhh--hccchhcc
Q 048771 384 TDEGWTVMGNDGMDDVTVLVNSSPDKLMGLNLSFANGFPAVSNAVL-CAKASMLLQNVPPAILLRFLRE--HRSEWADN 459 (814)
Q Consensus 384 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~G~Vl-~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 459 (814)
.+.+|..... .++|+|..+...+ .|.++ .-++..-+..++|+.||++|.| .|.+||..
T Consensus 45 ~~~~W~~~~~--~~gv~vy~~~~~~----------------~g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~ 105 (255)
T 2e3n_A 45 GDANWQLVVE--EGEMKVYRREVEE----------------NGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETT 105 (255)
T ss_dssp TCTTEEEEEE--ETTEEEEEECCEE----------------TTEECCCEEEEEEEETCCHHHHHHHHHCGGGHHHHCCS
T ss_pred CCCCcEEEEe--CCCEEEEEEEcCC----------------CCceeeeEEEEEEEcCCCHHHHHHHHhCcchHhhhhhh
Confidence 3468987753 4679998887541 12221 1233344446999999999997 89999964
No 168
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=62.58 E-value=4.4 Score=42.24 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=24.4
Q ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 82 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 82 l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
++++|+.|+.++..++.+..++ ++|+.||++||+.|.-
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~----~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEV----ADLKKENKDLKESLDI 61 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcC
Confidence 4455666666666665554433 4588899999998774
No 169
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=62.10 E-value=28 Score=30.06 Aligned_cols=33 Identities=9% Similarity=-0.031 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhhhcccc
Q 048771 93 NKLLMEENDRLQKQVSQLVYENGYFRQHTQSTT 125 (814)
Q Consensus 93 n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~~ 125 (814)
...+......|+.+=.+|+.+...|+.|+..+.
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555566666655543
No 170
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=61.69 E-value=20 Score=33.56 Aligned_cols=105 Identities=8% Similarity=-0.008 Sum_probs=65.1
Q ss_pred HHHHHHhc-CCCeEeecCCCCCceeEcccHH---HHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCC
Q 048771 698 SILKNLWH-HTDAVMCCSLKALPVFTFANQA---GLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQG 773 (814)
Q Consensus 698 ~~~~~L~~-~p~avl~h~~~~dP~f~yaN~a---aL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~ 773 (814)
+.+++++. .|+.|+..+. +=.++|.|++ |-++|.. -++.++-+-.--.+ ....+...-+-++.+.|-..- .
T Consensus 19 ~~l~~IL~~~~~gI~~vD~--~g~I~~~N~a~~~~~~i~g~-~~~~iGr~v~~~~~-~~~~~~v~~i~~~l~~g~~~~-~ 93 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNK--DDIFQYYNDSVPAAEMVFKR-TPSQVGRNVELCHP-PKVLDKVKKVFELLRNGQRDK-V 93 (151)
T ss_dssp HHHHHHHHHSSSEEEEEET--TSBEEEECCCSCGGGCSSCC-CGGGTTSBGGGSSC-HHHHHHHHHHHHHHHTTSBSE-E
T ss_pred HHHHHHHHhCCCceEEEcC--CCeEEEEeCCCchhhhhcCC-CHHHcCCCHHHhCC-HHHHHHHHHHHHHHHcCCccE-E
Confidence 34565654 8999888775 6689999999 9999994 47888876543333 222222233344555565332 1
Q ss_pred eeEEcCC--CCcEEEceeEEeEeecCCCceEEEEEeccC
Q 048771 774 GICLSSM--GRPVSYERAVAWKVLNEEETAHCICFMFIN 810 (814)
Q Consensus 774 GvRiss~--Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 810 (814)
=+.+... |+.+.+ ...-|.|++|.+.|.-.+|.+
T Consensus 94 ~~~~~~~~~~~~v~v---~~~Pi~d~~G~~~G~vev~~D 129 (151)
T 2qkp_A 94 NMWFQSERLGKFVYV---TYAAVRDQAGDFQGVLEYVQD 129 (151)
T ss_dssp EEEEEETTTTEEEEE---EEEEEECTTCCEEEEEEEEEE
T ss_pred EEEEecCCCCeEEEE---EEEEEECCCCCEEEEEEEEEE
Confidence 2333323 554433 344556999999998888865
No 171
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=61.03 E-value=17 Score=29.11 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=21.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhccc
Q 048771 89 LTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQST 124 (814)
Q Consensus 89 l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~ 124 (814)
++.++..+.+.|.+|...+++-+.|...|++|++++
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555666666666666666654
No 172
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=60.84 E-value=24 Score=38.09 Aligned_cols=105 Identities=10% Similarity=0.027 Sum_probs=70.2
Q ss_pred HHHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeE
Q 048771 698 SILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGIC 776 (814)
Q Consensus 698 ~~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 776 (814)
+.++.++. .|+.|+..+. +=.++|.|++ .++| ++-+++++-+..--..+.... ....+.++.+.|-.. ..-+.
T Consensus 239 ~~l~~IL~~l~dgIivvD~--~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~~~-~~~~l~~~l~~g~~~-~~~~~ 312 (369)
T 3cax_A 239 EELKAIFEALPVDVTFIDK--DDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKSVY-VVNKILKAFKEGRKK-EATFW 312 (369)
T ss_dssp HHHHHHHHHSSSEEEEECT--TSBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGGHH-HHHHHHHHHHHTSCS-CEEEE
T ss_pred HHHHHHHHhCCCcEEEECC--CCcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhhHH-HHHHHHHHHHcCCce-EEEEE
Confidence 34555554 8999998886 5589999999 9999 999999998776555433222 223344455666432 22344
Q ss_pred EcCCCCcEEEceeEEeEeecCCCceEEEEEeccCc
Q 048771 777 LSSMGRPVSYERAVAWKVLNEEETAHCICFMFINW 811 (814)
Q Consensus 777 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~W 811 (814)
+...|+.+.+. +--|.|++|.+.|...+|.+-
T Consensus 313 ~~~~g~~v~v~---~~PI~d~~G~~~G~v~v~~DI 344 (369)
T 3cax_A 313 LRLREKYVYIK---YVPLFNEKGEYIGTLEMTMDI 344 (369)
T ss_dssp EEETTEEEEEE---EEEEECTTSCEEEEEEEEEEC
T ss_pred EeeCCEEEEEE---EEEEECCCCCEEEEEEEEEcC
Confidence 55567655443 345679999999988888653
No 173
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=59.26 E-value=36 Score=37.00 Aligned_cols=97 Identities=13% Similarity=0.069 Sum_probs=64.8
Q ss_pred CeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccccCCCeeE-EcCCCCcEEE
Q 048771 708 DAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGIC-LSSMGRPVSY 786 (814)
Q Consensus 708 ~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR-iss~Grrf~i 786 (814)
..+.-|+. |=.|+|.|.++.++++|+-+||++.++---.-|.++..-...+.++++.|--....=.| ..+.|.-.|+
T Consensus 279 ~fi~~~~~--dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vWv 356 (387)
T 4f3l_B 279 EYVSRHAI--DGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITL 356 (387)
T ss_dssp EEEEEECT--TSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEEE
T ss_pred eEEEEECC--CCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEEE
Confidence 33445543 67899999999999999999999988766566777776666777776544211111133 3788998888
Q ss_pred ceeEEeEeecC-CCceEEEEEe
Q 048771 787 ERAVAWKVLNE-EETAHCICFM 807 (814)
Q Consensus 787 ~~a~vW~l~d~-~g~~~gqAa~ 807 (814)
+- ..--+.|. +|...+.-.+
T Consensus 357 ~~-~~~~~~~~~~g~~~~ivg~ 377 (387)
T 4f3l_B 357 RS-RWFSFMNPWTKEVEYIVST 377 (387)
T ss_dssp EE-EEEEEEETTTTEEEEEEEE
T ss_pred EE-EEEEEECCCCCCEEEEEEE
Confidence 63 32334555 6777665544
No 174
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=55.86 E-value=32 Score=31.10 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhHHHHhhhcc
Q 048771 104 QKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 104 ~~e~~~L~~EN~~Lr~el~~ 123 (814)
+.++.+|+.|+++||..+..
T Consensus 74 ~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 74 REDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777766554
No 175
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=54.92 E-value=2.3 Score=36.94 Aligned_cols=85 Identities=19% Similarity=0.207 Sum_probs=48.8
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHHHHHHHHhhHHHHHhhHHHHH
Q 048771 19 VRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLME 98 (814)
Q Consensus 19 ~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe~~~l~~~n~~l~~~n~~l~e 98 (814)
.+||+++....-..+... ......++|+++ |+++..|.-|.+.-+..-.. .... .. .
T Consensus 4 ~~ys~e~k~~~v~~~~~~---~g~s~~~ia~~~----gIs~~tl~rW~~~~~~~g~~-----~~~~-~~-------~--- 60 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENS---DGASLQQIANDL----GINRVTLKNWIIKYGSNHNV-----QGTT-PS-------A--- 60 (97)
T ss_dssp CCCCHHHHHHHHHHHTTG---GGSCHHHHHHHH----TSCHHHHHHHHHHHCCCSTT-----CSCC-CC-------H---
T ss_pred CCCCHHHHHHHHHHHHHc---CCChHHHHHHHH----CcCHHHHHHHHHHHhhcCcc-----cCCC-CC-------C---
Confidence 578888876665555332 012467889999 99999999997422210000 0000 00 0
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcccccc
Q 048771 99 ENDRLQKQVSQLVYENGYFRQHTQSTTLA 127 (814)
Q Consensus 99 e~~~l~~e~~~L~~EN~~Lr~el~~~~~~ 127 (814)
......++.+|+.||++|+.|+.-+...
T Consensus 61 -~~~~~~ei~~L~~e~~~L~~e~~~Lkk~ 88 (97)
T 2jn6_A 61 -AVSEAEQIRQLKKENALQRARTRHPAES 88 (97)
T ss_dssp -HHHTHHHHHHHHHCGGGGGGTTSCCCGG
T ss_pred -CCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112345667888888888887765543
No 176
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=54.39 E-value=10 Score=30.61 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhccc
Q 048771 99 ENDRLQKQVSQLVYENGYFRQHTQST 124 (814)
Q Consensus 99 e~~~l~~e~~~L~~EN~~Lr~el~~~ 124 (814)
-.+.|+.++.+|..||..|+.++..+
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777777777776654
No 177
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=50.29 E-value=18 Score=37.74 Aligned_cols=35 Identities=29% Similarity=0.201 Sum_probs=18.7
Q ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 048771 83 QAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYF 117 (814)
Q Consensus 83 ~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~L 117 (814)
+.+...+.++|+.|+++.+++.+|+.+|+.|+++|
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555555555555555554
No 178
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.18 E-value=25 Score=28.21 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 92 MNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 92 ~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
+.+.|+.|+.+|+.+...|..+++.|+.++.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555556666655554
No 179
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=47.97 E-value=39 Score=32.08 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=13.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 88 KLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 88 ~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
.++.+......+++.+.++..+|+.++..|+.++
T Consensus 93 ~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 93 DLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444444333
No 180
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=47.86 E-value=29 Score=25.70 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 048771 92 MNKLLMEENDRLQKQVSQLVYENGYFR 118 (814)
Q Consensus 92 ~n~~l~ee~~~l~~e~~~L~~EN~~Lr 118 (814)
+|+.+..+++.-+.|..+|+.||..|+
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 455555565555666666777776665
No 181
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=47.84 E-value=35 Score=26.26 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhHHHHhh
Q 048771 101 DRLQKQVSQLVYENGYFRQH 120 (814)
Q Consensus 101 ~~l~~e~~~L~~EN~~Lr~e 120 (814)
..+++-...|+.|.++|..|
T Consensus 27 qnlekiianlrdeiarlene 46 (52)
T 3he5_B 27 QNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555444
No 182
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=46.35 E-value=42 Score=25.74 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=25.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 89 LTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 89 l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
|...-+.+...+.+|+..+.-|..||+.|||-+.
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 4444556666777788888889999999998653
No 183
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=46.29 E-value=54 Score=30.47 Aligned_cols=96 Identities=6% Similarity=-0.083 Sum_probs=69.5
Q ss_pred hcCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCcc-ccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCC
Q 048771 704 WHHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITL-EKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGR 782 (814)
Q Consensus 704 ~~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lps-r~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Gr 782 (814)
=..|+.|+-=+ .|=...|-|+++..+.+++-++.++-+. +..+.-....+=+..+.+..++|-...-.+-.++..|+
T Consensus 24 d~l~~Gii~lD--~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~l~~~~~~v~~~~~~ 101 (125)
T 1nwz_A 24 DGLAFGAIQLD--GDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTFDYQMT 101 (125)
T ss_dssp TTCSSEEEEEE--TTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEEECTTSC
T ss_pred hccCceEEEEC--CCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEEcCCCC
Confidence 34788876554 4678999999999999999999999887 44555454444444455555599988777888899999
Q ss_pred cEEEceeEEeEeecCCCceEEE
Q 048771 783 PVSYERAVAWKVLNEEETAHCI 804 (814)
Q Consensus 783 rf~i~~a~vW~l~d~~g~~~gq 804 (814)
++.++=.. +.+++|...|.
T Consensus 102 p~~v~i~l---~~~~~~~~~~i 120 (125)
T 1nwz_A 102 PTKVKVHM---KKALSGDSYWV 120 (125)
T ss_dssp CEEEEEEE---EECSSSSEEEE
T ss_pred EEEEEEEE---EEcCCCCEEEE
Confidence 88875433 34666665554
No 184
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=45.05 E-value=34 Score=29.27 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 92 MNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 92 ~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
+-+.|++.+.+|.....+|..||..||+-..
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5578889999999999999999999996543
No 185
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=43.41 E-value=62 Score=30.35 Aligned_cols=95 Identities=8% Similarity=-0.062 Sum_probs=68.8
Q ss_pred cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCcc-ccccCcccHHHHhhhhHHHHHhccccCCCeeEEcCCCCc
Q 048771 705 HHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITL-EKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRP 783 (814)
Q Consensus 705 ~~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lps-r~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grr 783 (814)
..|+.|+.=+ .+=...|-|+++..+.+++-+++++-+. +..+.-....+=+..+.+..++|-+..-.+-.++..|++
T Consensus 30 ~l~~GiivlD--~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~l~~~~~yv~~~~~~p 107 (129)
T 1mzu_A 30 ALPVGAIQVD--GSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFVFDFQMAP 107 (129)
T ss_dssp GCSSEEEEEE--TTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEEEECSSCE
T ss_pred ccCceEEEEC--CCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEEcCCCCE
Confidence 3778876554 4678999999999999999999999887 445554554554444555555999887778888999998
Q ss_pred EEEceeEEeEeecCCCceEEE
Q 048771 784 VSYERAVAWKVLNEEETAHCI 804 (814)
Q Consensus 784 f~i~~a~vW~l~d~~g~~~gq 804 (814)
+.++=.. +.+++|...|.
T Consensus 108 ~~v~i~l---~~~~~~~~~~i 125 (129)
T 1mzu_A 108 VRVQIRM---QNAGVPDRYWI 125 (129)
T ss_dssp EEEEEEE---EECSSTTEEEE
T ss_pred EEEEEEE---EEcCCCCEEEE
Confidence 8774333 34666665553
No 186
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=42.88 E-value=60 Score=28.32 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 76 RKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 76 rqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
+.+...++.+|..+..++..++...+.+..+.++|+.|....++.+.
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888777777777777777777665555443
No 187
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=39.52 E-value=38 Score=24.94 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 96 LMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 96 l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
++..+...+++..+|+.+|+.|.+|+
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHH
Confidence 44455555666666677777776665
No 188
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=38.35 E-value=21 Score=32.69 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 100 NDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 100 ~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
.++|..|+++|+.||..||+++.+
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467889999999999999999975
No 189
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=37.89 E-value=1e+02 Score=24.53 Aligned_cols=37 Identities=30% Similarity=0.240 Sum_probs=25.1
Q ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 048771 81 RLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYF 117 (814)
Q Consensus 81 ~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~L 117 (814)
.++..+..+.+.|..|.+...+-..++..|+.|.++|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666677777777777777666777777666655
No 190
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=37.17 E-value=1.2e+02 Score=26.91 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=29.1
Q ss_pred hHHHhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 048771 71 CREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYEN 114 (814)
Q Consensus 71 aK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN 114 (814)
|+.|+.++...|+.++..|..+-+.+++|+.++..|...++...
T Consensus 42 CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 42 CRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777777666665555443
No 191
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=36.52 E-value=27 Score=27.81 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=17.3
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 048771 86 NRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQ 119 (814)
Q Consensus 86 n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~ 119 (814)
-+.|+.||..++.|.+.-..++..|..|--.||+
T Consensus 12 Ve~Lk~ENshLrrEL~dNS~~lskLE~ets~mKe 45 (54)
T 1deb_A 12 VEALKMENSNLRQELEDNSNHLTKLETEASNMKE 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHH
Confidence 3445555555555555555555555554444443
No 192
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.59 E-value=1e+02 Score=29.17 Aligned_cols=46 Identities=11% Similarity=0.005 Sum_probs=30.3
Q ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 77 KEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 77 qe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
++...++.+...++.+++.+..++.++.++...|+.++.+|..++.
T Consensus 89 kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 89 KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666777777777777777777777777665554
No 193
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=34.64 E-value=1.1e+02 Score=32.59 Aligned_cols=84 Identities=12% Similarity=0.143 Sum_probs=59.1
Q ss_pred EeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhcccc--CCCeeEE-cCCCCcEEE
Q 048771 710 VMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFAC--LQGGICL-SSMGRPVSY 786 (814)
Q Consensus 710 vl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~--~y~GvRi-ss~Grrf~i 786 (814)
+.-|+ .|=.|+|.|.++..+++|+-+||++.+..--.-|.++..-.+.+.++++.|-.. ...=.|+ .+.|.-.|+
T Consensus 177 itrh~--~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~vwv 254 (317)
T 4dj3_A 177 TTTHT--PGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVIL 254 (317)
T ss_dssp EEEEC--TTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEEEE
T ss_pred EEEec--CCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCEEEE
Confidence 44454 477899999999999999999999988765566777777777788888764331 1112343 677887777
Q ss_pred ceeEEeEe-ecC
Q 048771 787 ERAVAWKV-LNE 797 (814)
Q Consensus 787 ~~a~vW~l-~d~ 797 (814)
+ +-|++ +|.
T Consensus 255 e--t~~~~~~np 264 (317)
T 4dj3_A 255 D--SSWSSFVNP 264 (317)
T ss_dssp E--EEEEEEECS
T ss_pred E--EEEEEEECC
Confidence 6 34554 443
No 194
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=34.49 E-value=29 Score=29.53 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=25.2
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHHHH
Q 048771 26 VEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 80 (814)
Q Consensus 26 l~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe~~ 80 (814)
+....-.|+.+|||++.--.+ |+ .|||-+|+++|...
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-aR-----------------RNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-AR-----------------RNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-HH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-HH-----------------HHHHHHHHHHHHHH
Confidence 345566799999998763222 32 38999999877543
No 195
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.87 E-value=1.6e+02 Score=22.67 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=28.0
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcccc
Q 048771 86 NRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTT 125 (814)
Q Consensus 86 n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~~ 125 (814)
|.-|+.....+++++-.++.+.+.|..-.+.||+|+.|+.
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 4445555666777777777777777777788888877654
No 196
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=33.73 E-value=56 Score=34.93 Aligned_cols=65 Identities=8% Similarity=0.114 Sum_probs=47.8
Q ss_pred hHHHHHHHhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHH
Q 048771 696 SESILKNLWH-HTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQ 762 (814)
Q Consensus 696 ~~~~~~~L~~-~p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~ 762 (814)
.+++.+.+.. .+.+|+.-+ +|-.|.|.|.+..++++|+-+||++.+..--..|.++++-...|..
T Consensus 84 ~~~~~~~~l~a~~~~i~v~~--~~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~ 149 (361)
T 4f3l_A 84 NEEFTQLMLEALDGFFLAIM--TDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILST 149 (361)
T ss_dssp HHHHHHHHHHHTTEEEEEEE--TTSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCceEEEEc--CCccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhcc
Confidence 4454555544 455544443 5679999999999999999999999987766678877776666554
No 197
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=33.30 E-value=1.7e+02 Score=31.18 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=54.9
Q ss_pred eEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHh-ccccCCCeeEE-cCCCCcEEE
Q 048771 709 AVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQ-GFACLQGGICL-SSMGRPVSY 786 (814)
Q Consensus 709 avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~q-G~~~~y~GvRi-ss~Grrf~i 786 (814)
.+.-|+ .|=.|+|.|.++..+++|+-+||++.+.---.-|.++..-.+.+.++++. |-.....=.|+ .+.|.-.|+
T Consensus 178 Fitrh~--~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwv 255 (320)
T 4dj2_A 178 FTTRHT--PSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVTM 255 (320)
T ss_dssp EEEEEC--TTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEEEE
T ss_pred EEEEec--CCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEEEE
Confidence 345555 46789999999999999999999998766555677777777777777773 43221112343 677877777
Q ss_pred c
Q 048771 787 E 787 (814)
Q Consensus 787 ~ 787 (814)
+
T Consensus 256 e 256 (320)
T 4dj2_A 256 D 256 (320)
T ss_dssp E
T ss_pred E
Confidence 5
No 198
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=33.10 E-value=47 Score=35.29 Aligned_cols=83 Identities=13% Similarity=0.179 Sum_probs=59.1
Q ss_pred eEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcccHHHHhhhhHHHHHhccc-cCCCeeEE-cCCCCcEEE
Q 048771 709 AVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFA-CLQGGICL-SSMGRPVSY 786 (814)
Q Consensus 709 avl~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~-~~y~GvRi-ss~Grrf~i 786 (814)
.+.-|+ .|=.|+|.|.++..+++|+-+||++.+.---.-|.++..-.+.+.++++.|-. ....=.|+ .+.|.-.|+
T Consensus 167 Fitrh~--~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwv 244 (309)
T 3gdi_A 167 FTTTHT--PNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYITL 244 (309)
T ss_dssp EEEEEC--TTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEEE
T ss_pred EEEEec--CCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEEE
Confidence 455565 47789999999999999999999998765555677777777778888875432 11012454 778887777
Q ss_pred ceeEEeEee
Q 048771 787 ERAVAWKVL 795 (814)
Q Consensus 787 ~~a~vW~l~ 795 (814)
+ +-|.++
T Consensus 245 e--t~~~~~ 251 (309)
T 3gdi_A 245 D--TSWSSF 251 (309)
T ss_dssp E--EEEEEE
T ss_pred E--EEEEEE
Confidence 5 356543
No 199
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.40 E-value=49 Score=28.27 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhccc
Q 048771 94 KLLMEENDRLQKQVSQLVYENGYFRQHTQST 124 (814)
Q Consensus 94 ~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~ 124 (814)
..|.+++..++.+..+|+.+|..|++++..+
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777788888888999999999888754
No 200
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=32.25 E-value=8.2 Score=35.39 Aligned_cols=67 Identities=21% Similarity=0.210 Sum_probs=40.9
Q ss_pred CCCccceeeccccchhHHHhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhccccc
Q 048771 56 NIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTTL 126 (814)
Q Consensus 56 gL~~rQVkvWFQNRRaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~~~ 126 (814)
||++.|+.-.=|- |-+.|.+.-...|+. +-..+.+.|..++..|+.++.+|..||+.|+.|++.+..
T Consensus 27 ~Ls~~e~~~lK~~-RR~lKNR~yAq~CR~---rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~ 93 (107)
T 3a5t_A 27 GLSKEEIIQLKQR-RRTLKNRGYAASCRV---KRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRS 93 (107)
T ss_dssp TCCHHHHHHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSS
T ss_pred CCCHHHHHHHHHH-HHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665444332 323343333333332 122355777777777888888899999999999887643
No 201
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=31.69 E-value=1.5e+02 Score=25.92 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 048771 92 MNKLLMEENDRLQKQVSQLVYENGYFR 118 (814)
Q Consensus 92 ~n~~l~ee~~~l~~e~~~L~~EN~~Lr 118 (814)
+|+.|.+.++.++.+...|+.||..||
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555555555554
No 202
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=31.48 E-value=21 Score=28.10 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=32.1
Q ss_pred CcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccc
Q 048771 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQ 67 (814)
Q Consensus 17 kr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQ 67 (814)
++.+||+++.......+... .+......++|+++ |+++.+|..|..
T Consensus 2 ~r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~----gIs~~tl~~W~~ 47 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRND-NDCKGNQRATARKY----NIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHT----TSCHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHH----CcCHHHHHHHHH
Confidence 34578998887775555433 22112367899999 999999999964
No 203
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=30.75 E-value=1.8e+02 Score=26.28 Aligned_cols=45 Identities=36% Similarity=0.400 Sum_probs=31.2
Q ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 77 KEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 77 qe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
.++.+++.......+.-..|..+.++|..|-+.|+.||+..+++=
T Consensus 51 ~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~~~ 95 (104)
T 3s9g_A 51 DENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQQE 95 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 355555655555566667777777777777778888888777663
No 204
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.21 E-value=31 Score=35.95 Aligned_cols=41 Identities=15% Similarity=0.089 Sum_probs=35.7
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhccccc
Q 048771 86 NRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTTL 126 (814)
Q Consensus 86 n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~~~ 126 (814)
...++.++..+.+.|++|..++++++.|..+||+|++++..
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34578888999999999999999999999999999998654
No 205
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=30.18 E-value=1.8e+02 Score=23.81 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhHHHHhhhc
Q 048771 101 DRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 101 ~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
..|+.++.+|..||..|+.++.
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~ 54 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVA 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 206
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=29.56 E-value=20 Score=33.07 Aligned_cols=36 Identities=31% Similarity=0.495 Sum_probs=24.2
Q ss_pred HHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHhHHHHH
Q 048771 27 EALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 80 (814)
Q Consensus 27 ~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Krrqe~~ 80 (814)
..++-.|+.+|||.+.--.+ |+ .|||-|||+++...
T Consensus 16 RiIkiLyQSNPyP~peGTRq-aR-----------------RNRRRRWR~RQrQI 51 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGTRQ-AR-----------------RNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHHSSCCCCCCCCTT-TH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchh-hh-----------------HhHHHHHHHHHHHH
Confidence 44556699999998752111 11 48999999877543
No 207
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=28.58 E-value=1.8e+02 Score=27.01 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=19.9
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 86 NRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 86 n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
-..|+.+.+.+.+.......++.+||.+|..|...+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 3345555555555555555555666666655554443
No 208
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=27.71 E-value=75 Score=28.66 Aligned_cols=48 Identities=10% Similarity=0.071 Sum_probs=36.6
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 19 VRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 19 ~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
..+++.|.+.+...|-... .-.++|..+ |+++..|+.+...=|.+.|+
T Consensus 21 ~~L~~~~r~vl~l~y~~g~-----s~~EIA~~l----giS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 21 ALLTDKQMNYIELYYADDY-----SLAEIADEF----GVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GGSCHHHHHHHHHHHHTCC-----CHHHHHHHH----TCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCC-----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 4688999999988765442 467889999 99999999988755544444
No 209
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.30 E-value=67 Score=25.65 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=12.6
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHH
Q 048771 79 ASRLQAVNRKLTAMNKLLMEENDRLQK 105 (814)
Q Consensus 79 ~~~l~~~n~~l~~~n~~l~ee~~~l~~ 105 (814)
...++.+|..|+.++..+++++.++..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 210
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=27.20 E-value=64 Score=27.75 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 93 NKLLMEENDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 93 n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
-..|.++..++..+..+|+.||..|+++|..
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566677777777778888888888888764
No 211
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=26.55 E-value=1.8e+02 Score=23.18 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=10.6
Q ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHH
Q 048771 82 LQAVNRKLTAMNKLLMEENDRLQKQVS 108 (814)
Q Consensus 82 l~~~n~~l~~~n~~l~ee~~~l~~e~~ 108 (814)
++.+|..|+.|.+.-.....+|+.|..
T Consensus 15 Lk~ENshLrrEL~dNS~~lskLE~ets 41 (54)
T 1deb_A 15 LKMENSNLRQELEDNSNHLTKLETEAS 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHhhhh
Confidence 333344444443333333333433333
No 212
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=26.30 E-value=2.5e+02 Score=22.37 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhHHHHhhh
Q 048771 100 NDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 100 ~~~l~~e~~~L~~EN~~Lr~el 121 (814)
...|+.+-..|+.++..|++++
T Consensus 31 v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 31 VAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444555555555544
No 213
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=26.22 E-value=73 Score=23.64 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 97 MEENDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 97 ~ee~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
-.||++|.+++.+-..|.++||++-..
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~e 32 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKE 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 356777888887777788888876543
No 214
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.35 E-value=73 Score=26.92 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 96 LMEENDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 96 l~ee~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
|......++...+.|..||..|++++..
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444455555555555543
No 215
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.05 E-value=1.8e+02 Score=24.73 Aligned_cols=29 Identities=10% Similarity=-0.050 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhccccc
Q 048771 98 EENDRLQKQVSQLVYENGYFRQHTQSTTL 126 (814)
Q Consensus 98 ee~~~l~~e~~~L~~EN~~Lr~el~~~~~ 126 (814)
+.++++++++++...+...|+.||++..+
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566788888888999999999987644
No 216
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.80 E-value=2.1e+02 Score=25.00 Aligned_cols=36 Identities=28% Similarity=0.194 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 048771 76 RKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLV 111 (814)
Q Consensus 76 rqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~ 111 (814)
|+.....-.+|.+|....+.+.+++..++++.+.|+
T Consensus 38 R~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 38 RKALYEALKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344455555555555555555555554444
No 217
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=24.60 E-value=1.8e+02 Score=25.46 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 048771 92 MNKLLMEENDRLQKQVSQLVYENGYFR 118 (814)
Q Consensus 92 ~n~~l~ee~~~l~~e~~~L~~EN~~Lr 118 (814)
+|+.|.++.+.++.++..|+.||..|+
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555544
No 218
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.47 E-value=1.3e+02 Score=33.93 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhHHHHhhhccc
Q 048771 101 DRLQKQVSQLVYENGYFRQHTQST 124 (814)
Q Consensus 101 ~~l~~e~~~L~~EN~~Lr~el~~~ 124 (814)
++.++++.+++.|++.+++|+...
T Consensus 554 ~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 554 DNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333445556666666666666544
No 219
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.93 E-value=2.8e+02 Score=23.92 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred cchhHHHh----------HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 048771 68 NRRCREKQ----------RKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQS 123 (814)
Q Consensus 68 NRRaK~Kr----------rqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~ 123 (814)
+||.|.+- ++....|..-..+|...-..|..+..++++.+.-|+..++-|.+-+.+
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l~~ 78 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSALEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 220
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=23.88 E-value=46 Score=29.87 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=37.2
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhH
Q 048771 16 GKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCR 72 (814)
Q Consensus 16 rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK 72 (814)
++|.+||.++...+-..+.+++.+. ..++|+++ |+++..|.-|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~----gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRF----NIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHH----TCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHh----CCCHHHHHHHHhchhhh
Confidence 3567899999987777775554433 34688999 99999999998765543
No 221
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.73 E-value=1.5e+02 Score=33.49 Aligned_cols=29 Identities=7% Similarity=-0.009 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 94 KLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 94 ~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
+..++...++.+|.++++.|...|.++++
T Consensus 554 ~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 554 DNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333444444444444444444444433
No 222
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=23.43 E-value=1e+02 Score=27.65 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=35.7
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccchhHHHh
Q 048771 19 VRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 75 (814)
Q Consensus 19 ~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRaK~Kr 75 (814)
..+++.|.+.+...|-... .-.++|..+ |+++..|+.+...=|.+.|+
T Consensus 24 ~~L~~~~r~vl~l~~~~g~-----s~~EIA~~l----giS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 24 SLLTNKQRNYLELFYLEDY-----SLSEIADTF----NVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GGSCHHHHHHHHHHHTSCC-----CHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCC-----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 3578888888888765442 467889999 99999999888655544444
No 223
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=23.06 E-value=29 Score=25.45 Aligned_cols=42 Identities=21% Similarity=0.232 Sum_probs=30.0
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccch
Q 048771 20 RYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRR 70 (814)
Q Consensus 20 r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRR 70 (814)
.+++++...+...+... ....++|+.+ |++...|.-|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~l----gvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIF----GIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTT----SCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHH----CCCHHHHHHHHHHcc
Confidence 46666666666666543 2456889999 999999999986433
No 224
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.95 E-value=1.5e+02 Score=27.84 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=26.7
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCccceeeccccc
Q 048771 15 NGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNR 69 (814)
Q Consensus 15 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNR 69 (814)
...+..|+.+++..|.. ... .+.+ |++-.+|+-.+...
T Consensus 49 ~~g~R~Y~~~dl~~l~~------------I~~-lr~~----G~sL~eIk~~l~~~ 86 (148)
T 3gpv_A 49 EKGDRIFNEEALKYLEM------------ILC-LKNT----GMPIQKIKQFIDWS 86 (148)
T ss_dssp TTCCEEBCHHHHHHHHH------------HHH-HHTT----TCCHHHHHHHHHHH
T ss_pred CCCCeecCHHHHHHHHH------------HHH-HHHc----CCCHHHHHHHHHhh
Confidence 35567899999988852 333 3667 88888888777643
No 225
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=22.73 E-value=2.7 Score=38.55 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=22.3
Q ss_pred hhHHHhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHH
Q 048771 70 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVS 108 (814)
Q Consensus 70 RaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~ 108 (814)
+||.||..+...|+.++..|..+.+.|.+|+..+..|.+
T Consensus 51 ~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~ 89 (107)
T 3a5t_A 51 SCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELD 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665555555555555555444443
No 226
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=22.62 E-value=1.3e+02 Score=28.45 Aligned_cols=33 Identities=0% Similarity=-0.101 Sum_probs=27.3
Q ss_pred EeeCCCCceEEEEEEeeeccCCCcCccchhhhc
Q 048771 294 IRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYE 326 (814)
Q Consensus 294 Iq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~ 326 (814)
+.+.++|+|+|+|.-++++....+..++.++..
T Consensus 98 f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~ 130 (172)
T 3tfz_A 98 AFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLT 130 (172)
T ss_dssp EEEEETTEEEEEEEEEEEECCCCTTSSBTTTBC
T ss_pred EEECCCCcEEEEEEEEEEEcChhHHHhhccccC
Confidence 567777899999999999988888888887653
No 227
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.35 E-value=2.2e+02 Score=26.43 Aligned_cols=30 Identities=20% Similarity=0.156 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 048771 93 NKLLMEENDRLQKQVSQLVYENGYFRQHTQ 122 (814)
Q Consensus 93 n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~ 122 (814)
.+.+..|+..|..+++....|.++||.+.+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 344444445555555555555555555554
No 228
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=22.17 E-value=2.1e+02 Score=26.20 Aligned_cols=45 Identities=22% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHhhHHHHHHHH-----------HHHHHHHHHHHHhHHHHhhh
Q 048771 77 KEASRLQAVNRKLTAMNKLLMEEND-----------RLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 77 qe~~~l~~~n~~l~~~n~~l~ee~~-----------~l~~e~~~L~~EN~~Lr~el 121 (814)
+....|+..+..|..+.+.++.... .|++++.+|+.+|..|+..+
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~i 58 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV 58 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 229
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.86 E-value=3.1e+02 Score=22.01 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhhhccc
Q 048771 93 NKLLMEENDRLQKQVSQLVYENGYFRQHTQST 124 (814)
Q Consensus 93 n~~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~ 124 (814)
...|..+...|+.+-..|..+...|++|+..+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555666666666665543
No 230
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.95 E-value=1.8e+02 Score=25.40 Aligned_cols=36 Identities=28% Similarity=0.193 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHH
Q 048771 75 QRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQL 110 (814)
Q Consensus 75 rrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~e~~~L 110 (814)
||+.....-.+|.+|....+.+.+++..++++.++|
T Consensus 29 Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 29 RRKALYEALKENEKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333344445555555555444444444444433
No 231
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=20.48 E-value=1.8e+02 Score=20.50 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 048771 94 KLLMEENDRLQKQVSQLVYENGYFRQHT 121 (814)
Q Consensus 94 ~~l~ee~~~l~~e~~~L~~EN~~Lr~el 121 (814)
..+++|...+.+|...|+-|.+.|||-+
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkqgy 32 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQGY 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4566677777777778888888887753
No 232
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.31 E-value=1.6e+02 Score=32.61 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhccc
Q 048771 95 LLMEENDRLQKQVSQLVYENGYFRQHTQST 124 (814)
Q Consensus 95 ~l~ee~~~l~~e~~~L~~EN~~Lr~el~~~ 124 (814)
.++.+.+..+.+.++++.||++++.+++..
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 432 NAIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 344444556667777777888887777643
Done!