BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048772
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%)
Query: 126 GNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM 185
G +P ++ NL +L+ LK+ + L L LE L++ CT L+ P
Sbjct: 194 GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253
Query: 186 NLRHLIIMNHVYLEYMPRGIERLTGLRTL 214
L+ LI+ + L +P I RLT L L
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 128 SKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNL 187
+ P L HL+ + + ELP+T + LETL + R L+ LP + L L
Sbjct: 94 PQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRL 152
Query: 188 RHLIIMNHVYLEYMP 202
R L I L +P
Sbjct: 153 RELSIRACPELTELP 167
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 130 IPKAMKNLIHLRFLKLSWLRI--KELPETCCELINLETLEINRCTRLKRLPQGMEKLMNL 187
IP ++ +L LR LKL WL + E+P+ + LETL ++ +P G+ NL
Sbjct: 434 IPSSLGSLSKLRDLKL-WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 188 RHLIIMNHVYLEYMPRGIERLTGLRTL 214
+ + N+ +P+ I RL L L
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAIL 519
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 130 IPKAMKNLIHLRFLKLSWLRI--KELPETCCELINLETLEINRCTRLKRLPQGMEKLMNL 187
IP ++ +L LR LKL WL + E+P+ + LETL ++ +P G+ NL
Sbjct: 431 IPSSLGSLSKLRDLKL-WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 188 RHLIIMNHVYLEYMPRGIERLTGLRTL 214
+ + N+ +P+ I RL L L
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAIL 516
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 134 MKNLIHLRFLKLSWLRIKELPETCCE-LINLETLEINRCTRLKRLPQGMEKLMNLRHLII 192
+L L L L ++ LP + L++L+ L + C +L LP+G+E+L +L HL
Sbjct: 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRGIERLTHLTHL-A 141
Query: 193 MNHVYLEYMPRG-IERLTGL 211
++ L+ +P G +RL+ L
Sbjct: 142 LDQNQLKSIPHGAFDRLSSL 161
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 131 PKAMKNLIHLRFLKLSWLRIKELPETCCE-LINLETLEINRCTRLKRLPQGM-EKLMNLR 188
P +LI+L+ L L ++ LP + L L L++ +L LP + ++L++L+
Sbjct: 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHLK 115
Query: 189 HLIIMNHVYLEYMPRGIERLTGLRTLS 215
L + + E +PRGIERLT L L+
Sbjct: 116 ELFMCCNKLTE-LPRGIERLTHLTHLA 141
>pdb|4GOU|A Chain A, Crystal Structure Of An Rgs-rhogef From Entamoeba
Histolytica
Length = 518
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 182 EKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGR 221
EKL + H +++ YL ++P+ I +L + E VGR
Sbjct: 259 EKLNSGLHFLVLYRYYLRHVPKNIAKLCSIGXTDEIEVGR 298
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 137 LIHLRFLKLSWLRIKELPETCCE-LINLETLEINRCTRLKRLPQGM-EKLMNLRHLIIMN 194
L++L L+L ++K LP + L L L + L+ LP+G+ +KL +L+ L + N
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYN 166
Query: 195 HVYLEYMPRG-IERLTGLRTL 214
+ L+ +P G ++LT L+TL
Sbjct: 167 N-QLKRVPEGAFDKLTELKTL 186
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 134 MKNLIHLRFLKLSWLRIKE--LPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLI 191
L L LK++ +E LP+ EL NL L++++C + P L +L+ ++
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ-VL 499
Query: 192 IMNHVYLEYMPRGI-ERLTGLR 212
M L+ +P GI +RLT L+
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQ 521
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 133 AMKNLIHLRFLKLSWLRIKELPETCCELINLETLEI--NRCTRLKRLPQGMEKLMNLRHL 190
A + L++LR+L L +K++P L+ LE LE+ NR ++ P + L +LR L
Sbjct: 151 AFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIR--PGSFQGLTSLRKL 207
Query: 191 IIMN 194
+M+
Sbjct: 208 WLMH 211
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 235 ALKGMNHLRGLLKI-------RMLGDLANVDEAKHVDLKEKKNLDRLELW 277
ALKG+N + + +I + G+L N + H+D KE + +DR +
Sbjct: 52 ALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDHIDKKEARRMDRFTQY 101
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 133 AMKNLIHLRFLKLSWLRIKELPETCCELINLETLEI--NRCTRLKRLPQGMEKLMNLRHL 190
A + L++LR+L L +K++P L+ LE LE+ NR ++ P + L +LR L
Sbjct: 151 AFEGLVNLRYLNLGMCNLKDIPNL-TALVRLEELELSGNRLDLIR--PGSFQGLTSLRKL 207
Query: 191 IIMN 194
+M+
Sbjct: 208 WLMH 211
>pdb|2GTL|O Chain O, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 215
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 36 DKLTSNLLAIKAVLSDA-EQKQVKEKG-IRHWLDQLKEASCD 75
+K+T+++ ++++L D + K++++ G +RH +++L++ SCD
Sbjct: 15 NKITTSISHVESLLDDRLDPKRIRKAGSLRHRVEELEDPSCD 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,391,335
Number of Sequences: 62578
Number of extensions: 372442
Number of successful extensions: 830
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 22
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)