Query 048772
Match_columns 333
No_of_seqs 260 out of 3047
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 13:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.7 8.5E-18 1.8E-22 173.3 10.2 108 109-220 139-247 (968)
2 PLN00113 leucine-rich repeat r 99.7 1.1E-17 2.4E-22 172.5 9.5 158 104-279 112-270 (968)
3 KOG0444 Cytoskeletal regulator 99.7 1.1E-17 2.4E-22 154.5 0.9 187 102-320 70-257 (1255)
4 KOG4658 Apoptotic ATPase [Sign 99.6 4.3E-17 9.2E-22 162.5 1.5 255 1-281 438-729 (889)
5 KOG0444 Cytoskeletal regulator 99.6 4.8E-17 1E-21 150.4 -1.0 221 87-330 80-314 (1255)
6 KOG0617 Ras suppressor protein 99.6 8.8E-17 1.9E-21 126.3 -3.8 153 108-280 31-184 (264)
7 KOG0617 Ras suppressor protein 99.6 1.1E-16 2.3E-21 125.9 -3.5 161 86-268 34-195 (264)
8 KOG0472 Leucine-rich repeat pr 99.5 1E-15 2.2E-20 134.9 -3.4 194 99-331 103-297 (565)
9 PLN03210 Resistant to P. syrin 99.5 7.6E-14 1.6E-18 145.4 9.2 111 102-220 604-715 (1153)
10 PLN03210 Resistant to P. syrin 99.5 8.3E-14 1.8E-18 145.1 7.3 103 111-220 590-692 (1153)
11 KOG4194 Membrane glycoprotein 99.4 1.6E-13 3.5E-18 126.3 2.4 159 138-326 173-334 (873)
12 KOG0472 Leucine-rich repeat pr 99.3 1E-13 2.2E-18 122.5 -2.3 193 92-322 119-311 (565)
13 KOG0618 Serine/threonine phosp 99.3 3.6E-13 7.8E-18 129.9 0.9 182 101-319 255-487 (1081)
14 KOG4194 Membrane glycoprotein 99.3 5.1E-13 1.1E-17 123.1 -0.4 190 105-326 192-409 (873)
15 KOG4658 Apoptotic ATPase [Sign 99.2 6.6E-12 1.4E-16 125.7 5.2 91 101-195 562-652 (889)
16 KOG0532 Leucine-rich repeat (L 99.2 4.9E-13 1.1E-17 122.8 -2.6 157 101-280 89-245 (722)
17 cd00116 LRR_RI Leucine-rich re 99.2 9.5E-12 2.1E-16 112.2 3.7 204 101-321 42-263 (319)
18 PRK15370 E3 ubiquitin-protein 99.1 5.6E-11 1.2E-15 117.4 7.0 80 111-203 200-279 (754)
19 KOG0618 Serine/threonine phosp 99.1 1.3E-11 2.9E-16 119.3 2.4 207 107-331 42-263 (1081)
20 cd00116 LRR_RI Leucine-rich re 99.1 2.9E-11 6.3E-16 109.1 4.3 199 102-322 73-292 (319)
21 KOG0532 Leucine-rich repeat (L 99.1 4.5E-12 9.8E-17 116.6 -1.4 181 110-330 75-255 (722)
22 PRK15370 E3 ubiquitin-protein 99.1 2.6E-10 5.6E-15 112.7 7.9 168 110-329 220-387 (754)
23 KOG4237 Extracellular matrix p 99.1 1.1E-11 2.5E-16 109.4 -1.6 116 98-219 79-198 (498)
24 COG4886 Leucine-rich repeat (L 99.0 4.6E-10 1E-14 104.5 4.1 178 107-322 113-291 (394)
25 PF14580 LRR_9: Leucine-rich r 98.9 3.3E-10 7.1E-15 92.2 2.4 106 108-222 17-126 (175)
26 PRK15387 E3 ubiquitin-protein 98.9 2.9E-09 6.2E-14 105.1 7.9 22 308-330 422-443 (788)
27 PF14580 LRR_9: Leucine-rich r 98.9 5.7E-10 1.2E-14 90.8 1.8 137 128-277 10-148 (175)
28 PRK15387 E3 ubiquitin-protein 98.9 3.4E-09 7.3E-14 104.6 6.4 90 111-219 223-312 (788)
29 KOG4237 Extracellular matrix p 98.8 5.2E-10 1.1E-14 99.1 -2.5 105 111-221 68-176 (498)
30 PLN03150 hypothetical protein; 98.8 1.8E-08 3.9E-13 98.8 7.6 106 111-220 419-526 (623)
31 KOG1259 Nischarin, modulator o 98.7 4.1E-09 8.9E-14 90.5 1.0 104 107-219 281-384 (490)
32 COG4886 Leucine-rich repeat (L 98.6 2E-08 4.3E-13 93.6 3.2 159 100-280 129-288 (394)
33 KOG1259 Nischarin, modulator o 98.6 7.6E-09 1.6E-13 88.9 -0.8 134 134-283 280-413 (490)
34 PF13855 LRR_8: Leucine rich r 98.5 7.6E-08 1.6E-12 64.4 3.2 57 139-196 2-60 (61)
35 PLN03150 hypothetical protein; 98.5 3.2E-07 7E-12 90.1 8.0 99 100-202 432-532 (623)
36 KOG3207 Beta-tubulin folding c 98.5 5.8E-08 1.3E-12 87.3 2.2 84 107-196 118-208 (505)
37 PF13855 LRR_8: Leucine rich r 98.4 1.6E-07 3.5E-12 62.7 3.2 57 110-171 1-59 (61)
38 KOG3207 Beta-tubulin folding c 98.4 6E-08 1.3E-12 87.3 0.1 115 103-221 165-283 (505)
39 KOG3665 ZYG-1-like serine/thre 98.3 4.2E-07 9.2E-12 89.4 4.1 132 138-279 122-260 (699)
40 KOG2120 SCF ubiquitin ligase, 98.3 2.3E-07 4.9E-12 79.9 1.5 182 84-279 184-373 (419)
41 PF12799 LRR_4: Leucine Rich r 98.2 1.6E-06 3.4E-11 53.5 3.5 38 139-177 2-39 (44)
42 KOG0531 Protein phosphatase 1, 98.1 5E-07 1.1E-11 84.6 -0.3 109 106-223 91-200 (414)
43 PF12799 LRR_4: Leucine Rich r 98.1 3.5E-06 7.6E-11 52.0 3.6 41 110-155 1-41 (44)
44 KOG0531 Protein phosphatase 1, 98.1 3.4E-07 7.3E-12 85.8 -1.8 107 108-223 70-176 (414)
45 PRK15386 type III secretion pr 98.1 4.9E-06 1.1E-10 76.1 5.3 85 107-207 49-136 (426)
46 KOG1909 Ran GTPase-activating 98.1 1.8E-06 3.9E-11 75.8 2.2 205 100-321 48-283 (382)
47 KOG1909 Ran GTPase-activating 98.0 1.9E-06 4.2E-11 75.7 1.7 203 102-320 84-310 (382)
48 PRK15386 type III secretion pr 98.0 1.8E-05 3.9E-10 72.5 7.5 68 134-206 48-115 (426)
49 KOG4579 Leucine-rich repeat (L 98.0 8.8E-07 1.9E-11 67.8 -0.9 86 110-202 53-139 (177)
50 KOG1859 Leucine-rich repeat pr 98.0 3.7E-07 8E-12 87.1 -4.2 83 132-219 181-264 (1096)
51 KOG3665 ZYG-1-like serine/thre 97.9 1.4E-05 2.9E-10 78.9 5.6 107 85-196 122-231 (699)
52 KOG1859 Leucine-rich repeat pr 97.8 1.5E-06 3.2E-11 83.1 -3.0 113 100-222 177-292 (1096)
53 KOG2120 SCF ubiquitin ligase, 97.7 3E-06 6.5E-11 73.1 -2.1 183 111-319 186-374 (419)
54 KOG4579 Leucine-rich repeat (L 97.7 1.1E-05 2.4E-10 61.9 0.9 98 112-216 29-130 (177)
55 KOG2982 Uncharacterized conser 97.2 0.00013 2.8E-09 63.3 1.3 90 104-196 65-157 (418)
56 KOG1644 U2-associated snRNP A' 97.2 0.00035 7.7E-09 57.2 3.4 77 141-220 45-124 (233)
57 KOG2739 Leucine-rich acidic nu 97.1 0.00026 5.6E-09 60.3 2.1 111 102-220 35-154 (260)
58 KOG2123 Uncharacterized conser 97.0 9.4E-05 2E-09 63.5 -1.1 103 107-217 16-125 (388)
59 COG5238 RNA1 Ran GTPase-activa 97.0 0.00027 5.9E-09 60.5 1.6 39 158-196 89-131 (388)
60 COG5238 RNA1 Ran GTPase-activa 97.0 0.002 4.3E-08 55.4 6.2 172 134-321 26-227 (388)
61 KOG1644 U2-associated snRNP A' 96.9 0.00085 1.8E-08 55.1 3.2 104 109-220 41-151 (233)
62 KOG2982 Uncharacterized conser 96.9 0.0018 4E-08 56.3 5.1 165 100-277 87-287 (418)
63 KOG4341 F-box protein containi 96.6 0.0017 3.8E-08 58.8 3.3 141 160-321 293-439 (483)
64 PF00560 LRR_1: Leucine Rich R 96.6 0.00094 2E-08 34.3 1.0 19 140-158 2-20 (22)
65 KOG2739 Leucine-rich acidic nu 96.5 0.0011 2.4E-08 56.4 1.4 106 135-244 40-150 (260)
66 KOG0473 Leucine-rich repeat pr 95.7 0.00054 1.2E-08 57.5 -4.0 84 107-196 39-122 (326)
67 KOG2123 Uncharacterized conser 95.7 0.0029 6.3E-08 54.6 0.2 81 105-191 36-123 (388)
68 PF00560 LRR_1: Leucine Rich R 95.6 0.0054 1.2E-07 31.4 1.0 19 163-182 2-20 (22)
69 PF13504 LRR_7: Leucine rich r 95.0 0.015 3.2E-07 27.7 1.3 16 139-154 2-17 (17)
70 KOG0473 Leucine-rich repeat pr 94.2 0.0028 6.2E-08 53.2 -3.8 85 133-219 37-121 (326)
71 KOG1947 Leucine rich repeat pr 93.3 0.049 1.1E-06 51.7 2.2 18 262-279 288-305 (482)
72 smart00370 LRR Leucine-rich re 92.3 0.12 2.5E-06 27.5 1.9 18 138-155 2-19 (26)
73 smart00369 LRR_TYP Leucine-ric 92.3 0.12 2.5E-06 27.5 1.9 18 138-155 2-19 (26)
74 KOG4341 F-box protein containi 91.4 0.12 2.5E-06 47.4 1.9 160 108-279 266-436 (483)
75 smart00369 LRR_TYP Leucine-ric 89.8 0.32 6.9E-06 25.7 2.1 19 161-180 2-20 (26)
76 smart00370 LRR Leucine-rich re 89.8 0.32 6.9E-06 25.7 2.1 19 161-180 2-20 (26)
77 KOG1947 Leucine rich repeat pr 88.6 0.3 6.6E-06 46.3 2.4 113 107-221 185-307 (482)
78 PF13306 LRR_5: Leucine rich r 88.2 0.66 1.4E-05 35.3 3.7 81 105-194 7-90 (129)
79 PF13306 LRR_5: Leucine rich r 87.9 0.78 1.7E-05 34.8 4.0 97 103-211 28-128 (129)
80 KOG4308 LRR-containing protein 87.7 0.007 1.5E-07 57.5 -9.1 175 100-279 105-300 (478)
81 KOG3864 Uncharacterized conser 83.8 0.2 4.3E-06 41.5 -1.3 80 139-218 102-185 (221)
82 KOG3864 Uncharacterized conser 83.5 0.22 4.7E-06 41.2 -1.2 88 161-256 101-191 (221)
83 smart00364 LRR_BAC Leucine-ric 81.5 0.92 2E-05 24.2 1.1 17 139-155 3-19 (26)
84 KOG4308 LRR-containing protein 79.8 0.051 1.1E-06 51.7 -7.0 195 112-321 89-303 (478)
85 PF13516 LRR_6: Leucine Rich r 78.4 1.3 2.8E-05 22.8 1.1 22 308-329 2-23 (24)
86 smart00365 LRR_SD22 Leucine-ri 69.6 3.6 7.8E-05 21.9 1.5 13 139-151 3-15 (26)
87 smart00367 LRR_CC Leucine-rich 68.6 3.6 7.8E-05 21.6 1.4 13 162-174 3-15 (26)
88 PF05659 RPW8: Arabidopsis bro 65.5 40 0.00088 26.6 7.3 55 1-55 2-56 (147)
89 smart00368 LRR_RI Leucine rich 57.6 7.9 0.00017 20.8 1.5 14 138-151 2-15 (28)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.73 E-value=8.5e-18 Score=173.27 Aligned_cols=108 Identities=19% Similarity=0.295 Sum_probs=60.0
Q ss_pred cccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCCcCChhhhcCCCC
Q 048772 109 FTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLKRLPQGMEKLMNL 187 (333)
Q Consensus 109 ~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L 187 (333)
+++|++|++++|.+. ..+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|
T Consensus 139 l~~L~~L~Ls~n~~~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 139 IPNLETLDLSNNMLS----GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred cCCCCEEECcCCccc----ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 455666666666551 345555666666666666665543 455556666666666665543333455555555555
Q ss_pred CeeecccccccccCchhhcCCCCCCccceEEeC
Q 048772 188 RHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVG 220 (333)
Q Consensus 188 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~ 220 (333)
++|++++|.....+|..++++++|++|++.++.
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 555555555334455555555555555554443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.72 E-value=1.1e-17 Score=172.48 Aligned_cols=158 Identities=22% Similarity=0.329 Sum_probs=97.6
Q ss_pred hHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCCcCChhhh
Q 048772 104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLKRLPQGME 182 (333)
Q Consensus 104 ~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~ 182 (333)
..+..+++|++|++++|.+. ..+|. +.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..++
T Consensus 112 ~~~~~l~~L~~L~Ls~n~l~----~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 112 DIFTTSSSLRYLNLSNNNFT----GSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred HHhccCCCCCEEECcCCccc----cccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh
Confidence 34447777777777777762 33442 45677777777777765 6677777777777777777444456777777
Q ss_pred cCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhh
Q 048772 183 KLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKH 262 (333)
Q Consensus 183 ~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~ 262 (333)
++++|++|++++|.....+|..++++++|++|++..+.... ..+..+.++++|+. |++.+. ...+..+
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-------~~p~~l~~l~~L~~-L~L~~n----~l~~~~p 253 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-------EIPYEIGGLTSLNH-LDLVYN----NLTGPIP 253 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC-------cCChhHhcCCCCCE-EECcCc----eeccccC
Confidence 77777777777777555677777777777777776655432 23334444555554 554432 1122334
Q ss_pred hcCcccCCCCceEEEec
Q 048772 263 VDLKEKKNLDRLELWFD 279 (333)
Q Consensus 263 ~~l~~l~~L~~L~l~~~ 279 (333)
..++++++|+.|+++.|
T Consensus 254 ~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 254 SSLGNLKNLQYLFLYQN 270 (968)
T ss_pred hhHhCCCCCCEEECcCC
Confidence 44444455555555444
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=1.1e-17 Score=154.52 Aligned_cols=187 Identities=23% Similarity=0.266 Sum_probs=126.3
Q ss_pred hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh-
Q 048772 102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG- 180 (333)
Q Consensus 102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~- 180 (333)
+..-++.+++||.+.+..|++.. ..+|+.|.+|..|..||||+|++++.|..+.+-+++-+|+|++ +.|..+|..
T Consensus 70 vhGELs~Lp~LRsv~~R~N~LKn---sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~l 145 (1255)
T KOG0444|consen 70 VHGELSDLPRLRSVIVRDNNLKN---SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSL 145 (1255)
T ss_pred hhhhhccchhhHHHhhhcccccc---CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchH
Confidence 34445667777877777777632 5677778888888888888888888887777777888888887 667778766
Q ss_pred hhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhh
Q 048772 181 MEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEA 260 (333)
Q Consensus 181 ~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~ 260 (333)
+-+|+.|-.|++++|. +..+|+.+.+|..|++|.+.+++... ..+.+|+.++.|.. |.+++-+. ....
T Consensus 146 finLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~h-------fQLrQLPsmtsL~v-Lhms~TqR---Tl~N 213 (1255)
T KOG0444|consen 146 FINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNH-------FQLRQLPSMTSLSV-LHMSNTQR---TLDN 213 (1255)
T ss_pred HHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhH-------HHHhcCccchhhhh-hhcccccc---hhhc
Confidence 4577777888888777 77788778888888888777766543 45556666666665 66655332 3345
Q ss_pred hhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecC
Q 048772 261 KHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGI 320 (333)
Q Consensus 261 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~ 320 (333)
+|.++..+.+|..++++.|+ -+. +|+.+.. .++|+.|+|++|.+
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~-----Lp~--------vPecly~---l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENN-----LPI--------VPECLYK---LRNLRRLNLSGNKI 257 (1255)
T ss_pred CCCchhhhhhhhhccccccC-----CCc--------chHHHhh---hhhhheeccCcCce
Confidence 66666677777777776652 221 4455545 55555555555544
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.64 E-value=4.3e-17 Score=162.52 Aligned_cols=255 Identities=19% Similarity=0.252 Sum_probs=153.0
Q ss_pred ChhHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHhhHHHhhhhcccc
Q 048772 1 MVDAVVSV-----VLDQLISSAFEEAVERVRRVTAVKAEVDKLTSNLLAIKAVLSDAEQKQVKEKGIRHWLDQLKEASCD 75 (333)
Q Consensus 1 mae~fi~~-----~~e~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~d~~~~~~~~~~~~~~l~~~~~~~~~ 75 (333)
|||||+.. ..++.+..|..+++.++..+.+... .+... ..||++++|.+-...++-.... ...+++
T Consensus 438 iaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~--~kmHDvvRe~al~ias~~~~~~-----e~~iv~ 508 (889)
T KOG4658|consen 438 IAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKET--VKMHDVVREMALWIASDFGKQE-----ENQIVS 508 (889)
T ss_pred HhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeE--EEeeHHHHHHHHHHhccccccc-----cceEEE
Confidence 68999854 4789999999999999998876543 12222 3677777766544443111100 001111
Q ss_pred -------ccchhhHHHHHHhhhhHhcCCccchhhhhHhhhcccccceEeeccc--cccccCCCcch-HhhcccccCeeec
Q 048772 76 -------MEDVFDEWITASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGEN--VWEIGNSKIPK-AMKNLIHLRFLKL 145 (333)
Q Consensus 76 -------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~lp~-~~~~l~~L~~L~l 145 (333)
..++. .+ ..+|+........ ..+... ..++.|++|-+.++. + ..++. .|..|+.|++||+
T Consensus 509 ~~~~~~~~~~~~-~~-~~~rr~s~~~~~~--~~~~~~-~~~~~L~tLll~~n~~~l-----~~is~~ff~~m~~LrVLDL 578 (889)
T KOG4658|consen 509 DGVGLSEIPQVK-SW-NSVRRMSLMNNKI--EHIAGS-SENPKLRTLLLQRNSDWL-----LEISGEFFRSLPLLRVLDL 578 (889)
T ss_pred CCcCcccccccc-ch-hheeEEEEeccch--hhccCC-CCCCccceEEEeecchhh-----hhcCHHHHhhCcceEEEEC
Confidence 11111 11 2333333322211 111111 234467777777775 3 33333 3666888888888
Q ss_pred cCCc-CcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCC
Q 048772 146 SWLR-IKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGG 224 (333)
Q Consensus 146 ~~~~-i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~ 224 (333)
++|. +.++|++|++|.|||||++++ +.++.+|.++++|+.|.+|++..+..+..+|.....|++|++|.++......
T Consensus 579 s~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~- 656 (889)
T KOG4658|consen 579 SGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN- 656 (889)
T ss_pred CCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-
Confidence 8765 678888888888888888887 7788888888888888888888777666665556668888888876654221
Q ss_pred cccCcccchhhhcCcccccceeEEcccCC---------------------CCCchhhhhhcCcccCCCCceEEEeccC
Q 048772 225 EHASKVCKLEALKGMNHLRGLLKIRMLGD---------------------LANVDEAKHVDLKEKKNLDRLELWFDNV 281 (333)
Q Consensus 225 ~~~~~~~~~~~L~~L~~L~~~L~~~~~~~---------------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 281 (333)
....+.++.+|++|+. +.+..... ..........++..+++|+.|.+..+..
T Consensus 657 ----~~~~l~el~~Le~L~~-ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 657 ----DKLLLKELENLEHLEN-LSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGI 729 (889)
T ss_pred ----chhhHHhhhcccchhh-heeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCC
Confidence 2345566666666665 54432211 0012233455677788899998886654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.61 E-value=4.8e-17 Score=150.39 Aligned_cols=221 Identities=19% Similarity=0.200 Sum_probs=154.8
Q ss_pred HhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcE
Q 048772 87 SRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLET 165 (333)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~ 165 (333)
.|.+.....+....-+|.-+..++-|.+|++++|++ ...|..+..-+++-+|+||+|+|..+|. -+-+|+.|-+
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL-----~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL-----REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhh-----hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 344444444444444555556789999999999999 8999999999999999999999999995 4579999999
Q ss_pred EeccCCCCCCcCChhhhcCCCCCeeecccccccccCc-hhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccc
Q 048772 166 LEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRG 244 (333)
Q Consensus 166 L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 244 (333)
|||+. +++..+|..+.+|.+|++|.+++|+ +..+- ..+..|++|++|++++..... ...+..+..|.+|+.
T Consensus 155 LDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl------~N~Ptsld~l~NL~d 226 (1255)
T KOG0444|consen 155 LDLSN-NRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTL------DNIPTSLDDLHNLRD 226 (1255)
T ss_pred hcccc-chhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchh------hcCCCchhhhhhhhh
Confidence 99999 8999999999999999999999998 32221 224456777777776655433 556667777777776
Q ss_pred eeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCc----------cchHHHHHHhhhccCCCCCCCceeeE
Q 048772 245 LLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENE----------ENDEAITKIAKSVRVCLLWDNCHPLK 314 (333)
Q Consensus 245 ~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~L~~L~ 314 (333)
++++. +.....|..+-++.+|+.|+|++|.+..-...+ ...+++...|+.+.. ++.|+.|+
T Consensus 227 -vDlS~-----N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcK---L~kL~kLy 297 (1255)
T KOG0444|consen 227 -VDLSE-----NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCK---LTKLTKLY 297 (1255)
T ss_pred -ccccc-----cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhh---hHHHHHHH
Confidence 77664 233456788889999999999988542211111 012333334555555 55666666
Q ss_pred EeeecC--hhhhhhhHhh
Q 048772 315 YSRYGI--WIVWKEWVMN 330 (333)
Q Consensus 315 l~~~~~--~~~~p~w~~~ 330 (333)
+.+|.+ .+ +|.-|+.
T Consensus 298 ~n~NkL~FeG-iPSGIGK 314 (1255)
T KOG0444|consen 298 ANNNKLTFEG-IPSGIGK 314 (1255)
T ss_pred hccCcccccC-Cccchhh
Confidence 665543 24 5665554
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=8.8e-17 Score=126.34 Aligned_cols=153 Identities=21% Similarity=0.243 Sum_probs=118.7
Q ss_pred hcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCC
Q 048772 108 QFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNL 187 (333)
Q Consensus 108 ~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L 187 (333)
++.....|.+++|++ ..+|+.|..+.+|++|++++|+++++|.+|+.++.|+.|++.- +++..+|.+||.++.|
T Consensus 31 ~~s~ITrLtLSHNKl-----~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKL-----TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPAL 104 (264)
T ss_pred chhhhhhhhcccCce-----eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchh
Confidence 456677788899988 7888889999999999999999999999999999999999987 7888899999999999
Q ss_pred Ceeeccccc-ccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCc
Q 048772 188 RHLIIMNHV-YLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLK 266 (333)
Q Consensus 188 ~~L~l~~~~-~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~ 266 (333)
+.|++.+|. +-..+|..+-.|+.|+.|++.++... -.+...++|++|+- |.+.. +..-.++.+++
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe--------~lp~dvg~lt~lqi-l~lrd-----ndll~lpkeig 170 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE--------ILPPDVGKLTNLQI-LSLRD-----NDLLSLPKEIG 170 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc--------cCChhhhhhcceeE-Eeecc-----CchhhCcHHHH
Confidence 999998776 23457777888888888887765532 33455666666664 55553 22345677888
Q ss_pred ccCCCCceEEEecc
Q 048772 267 EKKNLDRLELWFDN 280 (333)
Q Consensus 267 ~l~~L~~L~l~~~~ 280 (333)
.+..|+.|++.+|.
T Consensus 171 ~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 171 DLTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHHHhcccce
Confidence 88888888888773
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=1.1e-16 Score=125.88 Aligned_cols=161 Identities=20% Similarity=0.261 Sum_probs=130.4
Q ss_pred HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcE
Q 048772 86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLET 165 (333)
Q Consensus 86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~ 165 (333)
.+.++.+.+.. ...+++-+..+++|++|++.+|++ +.+|.+++.++.||.|+++.|++..+|..+|.++-|++
T Consensus 34 ~ITrLtLSHNK--l~~vppnia~l~nlevln~~nnqi-----e~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 34 NITRLTLSHNK--LTVVPPNIAELKNLEVLNLSNNQI-----EELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhcccCc--eeecCCcHHHhhhhhhhhcccchh-----hhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 44455554432 234566668899999999999999 99999999999999999999999999999999999999
Q ss_pred EeccCCCC-CCcCChhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccc
Q 048772 166 LEINRCTR-LKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRG 244 (333)
Q Consensus 166 L~l~~~~~-~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 244 (333)
||+.+|+. -..+|..|..|..|+.|.++.|. ...+|..+++|++||.|.+..+... ..+.+++.|+.|+.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll--------~lpkeig~lt~lre 177 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLL--------SLPKEIGDLTRLRE 177 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchh--------hCcHHHHHHHHHHH
Confidence 99999442 23699999999999999999998 8999999999999999999877654 35667778888887
Q ss_pred eeEEcccCCCCCchhhhhhcCccc
Q 048772 245 LLKIRMLGDLANVDEAKHVDLKEK 268 (333)
Q Consensus 245 ~L~~~~~~~~~~~~~~~~~~l~~l 268 (333)
|.+.+.+ ...++.+++++
T Consensus 178 -lhiqgnr-----l~vlppel~~l 195 (264)
T KOG0617|consen 178 -LHIQGNR-----LTVLPPELANL 195 (264)
T ss_pred -Hhcccce-----eeecChhhhhh
Confidence 8887632 23445555443
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.49 E-value=1e-15 Score=134.90 Aligned_cols=194 Identities=22% Similarity=0.267 Sum_probs=141.1
Q ss_pred chhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCC
Q 048772 99 KKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLP 178 (333)
Q Consensus 99 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp 178 (333)
...+|..+.+...++.|+.+.|.+ ..+|++++++..|..++..+|++.++|..++++..|..+++.+ +.++++|
T Consensus 103 ls~lp~~i~s~~~l~~l~~s~n~~-----~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~ 176 (565)
T KOG0472|consen 103 LSELPEQIGSLISLVKLDCSSNEL-----KELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALP 176 (565)
T ss_pred HhhccHHHhhhhhhhhhhccccce-----eecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCC
Confidence 345666667777888888888887 7778888888888888888888888888888888888888888 7788888
Q ss_pred hhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCch
Q 048772 179 QGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVD 258 (333)
Q Consensus 179 ~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~ 258 (333)
...-+++.|++|+...|. ++.+|+.++.|.+|.-|++..+.... +.+++....|.. +... .+..
T Consensus 177 ~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~~---------lPef~gcs~L~E-lh~g-----~N~i 240 (565)
T KOG0472|consen 177 ENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIRF---------LPEFPGCSLLKE-LHVG-----ENQI 240 (565)
T ss_pred HHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhccccc---------CCCCCccHHHHH-HHhc-----ccHH
Confidence 887778889999988877 88999999999999999988776543 113333333332 2222 1223
Q ss_pred hhhhhcC-cccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhhh
Q 048772 259 EAKHVDL-KEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNF 331 (333)
Q Consensus 259 ~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~l 331 (333)
+.++++. +++.+|..|+++.|+ ++++|+.+.- +++|..|++++|.++. +|.-++++
T Consensus 241 ~~lpae~~~~L~~l~vLDLRdNk-------------lke~Pde~cl---LrsL~rLDlSNN~is~-Lp~sLgnl 297 (565)
T KOG0472|consen 241 EMLPAEHLKHLNSLLVLDLRDNK-------------LKEVPDEICL---LRSLERLDLSNNDISS-LPYSLGNL 297 (565)
T ss_pred HhhHHHHhcccccceeeeccccc-------------cccCchHHHH---hhhhhhhcccCCcccc-CCcccccc
Confidence 4445444 477788888887552 3336666666 7778888888887777 77766653
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.48 E-value=7.6e-14 Score=145.41 Aligned_cols=111 Identities=29% Similarity=0.427 Sum_probs=84.3
Q ss_pred hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCc-CcccchhhhccccCcEEeccCCCCCCcCChh
Q 048772 102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR-IKELPETCCELINLETLEINRCTRLKRLPQG 180 (333)
Q Consensus 102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~ 180 (333)
+|..| ...+|+.|++.++.+ ..+|..+..+++|++|+++++. +..+|. ++.+++|++|++++|+.+..+|.+
T Consensus 604 lP~~f-~~~~L~~L~L~~s~l-----~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s 676 (1153)
T PLN03210 604 MPSNF-RPENLVKLQMQGSKL-----EKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS 676 (1153)
T ss_pred CCCcC-CccCCcEEECcCccc-----cccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh
Confidence 34443 457888888888887 6777777788888888888765 667774 777888888888888888888888
Q ss_pred hhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeC
Q 048772 181 MEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVG 220 (333)
Q Consensus 181 ~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~ 220 (333)
+++|++|+.|++++|..+..+|..+ ++++|++|++.+|.
T Consensus 677 i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 8888888888888887778888765 57777777766553
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.46 E-value=8.3e-14 Score=145.12 Aligned_cols=103 Identities=21% Similarity=0.268 Sum_probs=68.3
Q ss_pred cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCee
Q 048772 111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHL 190 (333)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L 190 (333)
.||.|.+.++.+ ..+|..+ ...+|+.|++.++.+..+|..+..+++|++|++++|+.++.+|. ++.+++|++|
T Consensus 590 ~Lr~L~~~~~~l-----~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L 662 (1153)
T PLN03210 590 KLRLLRWDKYPL-----RCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETL 662 (1153)
T ss_pred ccEEEEecCCCC-----CCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEE
Confidence 466777766666 5666554 35666777777766666666666677777777766556666663 6666677777
Q ss_pred ecccccccccCchhhcCCCCCCccceEEeC
Q 048772 191 IIMNHVYLEYMPRGIERLTGLRTLSEFVVG 220 (333)
Q Consensus 191 ~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~ 220 (333)
++++|..+..+|..+++|++|+.|++.+|.
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 777766666677667777777777666543
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.37 E-value=1.6e-13 Score=126.33 Aligned_cols=159 Identities=22% Similarity=0.224 Sum_probs=82.1
Q ss_pred cccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCChh-hhcCCCCCeeecccccccccC-chhhcCCCCCCcc
Q 048772 138 IHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQG-MEKLMNLRHLIIMNHVYLEYM-PRGIERLTGLRTL 214 (333)
Q Consensus 138 ~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L 214 (333)
.++++|+|++|.|+.+- ..+..|.+|.+|.|++ |+++.+|.- |.+|++|+.|++..|. +..+ -..|..|.+|+.|
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhh
Confidence 34444444444444443 3344444555555555 445555432 3335555555555444 2222 1124445555555
Q ss_pred ceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHH
Q 048772 215 SEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAI 294 (333)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 294 (333)
.+..+.+.. .....+-.+.++..|. |..+.+..+ ....+-+++.|+.|++++|.+...
T Consensus 251 klqrN~I~k----L~DG~Fy~l~kme~l~--L~~N~l~~v------n~g~lfgLt~L~~L~lS~NaI~ri---------- 308 (873)
T KOG4194|consen 251 KLQRNDISK----LDDGAFYGLEKMEHLN--LETNRLQAV------NEGWLFGLTSLEQLDLSYNAIQRI---------- 308 (873)
T ss_pred hhhhcCccc----ccCcceeeecccceee--cccchhhhh------hcccccccchhhhhccchhhhhee----------
Confidence 544443322 1122333344444443 333333322 335667788889999998842111
Q ss_pred HHHhhhccCCCCCCCceeeEEeeecChhhhhh
Q 048772 295 TKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKE 326 (333)
Q Consensus 295 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~ 326 (333)
..+++.- +++|+.|+|+.|.+.+ +|+
T Consensus 309 --h~d~Wsf---tqkL~~LdLs~N~i~~-l~~ 334 (873)
T KOG4194|consen 309 --HIDSWSF---TQKLKELDLSSNRITR-LDE 334 (873)
T ss_pred --ecchhhh---cccceeEecccccccc-CCh
Confidence 2345665 8899999999999887 654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.32 E-value=1e-13 Score=122.48 Aligned_cols=193 Identities=23% Similarity=0.259 Sum_probs=144.8
Q ss_pred HhcCCccchhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCC
Q 048772 92 IKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRC 171 (333)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~ 171 (333)
+.........+++.+..+-.+..++-.+|++ ..+|..++.+..|..+++.+|.++++|+..-+++.|+.||...
T Consensus 119 l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i-----~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~- 192 (565)
T KOG0472|consen 119 LDCSSNELKELPDSIGRLLDLEDLDATNNQI-----SSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS- 192 (565)
T ss_pred hhccccceeecCchHHHHhhhhhhhcccccc-----ccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-
Confidence 3333344455666677788888888888888 7888889889999999999999998887777799999999888
Q ss_pred CCCCcCChhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEccc
Q 048772 172 TRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRML 251 (333)
Q Consensus 172 ~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~ 251 (333)
+.++.+|..++.|.+|..|+++.|. +..+| .|+.+..|.+|+...+.... -..+-+++|..+.. |++..
T Consensus 193 N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~N~i~~-------lpae~~~~L~~l~v-LDLRd- 261 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLYLRRNK-IRFLP-EFPGCSLLKELHVGENQIEM-------LPAEHLKHLNSLLV-LDLRD- 261 (565)
T ss_pred hhhhcCChhhcchhhhHHHHhhhcc-cccCC-CCCccHHHHHHHhcccHHHh-------hHHHHhccccccee-eeccc-
Confidence 7788999999999999999999888 78888 68888888888876554332 12233457777776 77664
Q ss_pred CCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChh
Q 048772 252 GDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWI 322 (333)
Q Consensus 252 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~ 322 (333)
+.....|..+..+++|..|+++.|. .+. .+-++.. + .|+.|-+.||.+.+
T Consensus 262 ----Nklke~Pde~clLrsL~rLDlSNN~-----is~--------Lp~sLgn---l-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 262 ----NKLKEVPDEICLLRSLERLDLSNND-----ISS--------LPYSLGN---L-HLKFLALEGNPLRT 311 (565)
T ss_pred ----cccccCchHHHHhhhhhhhcccCCc-----ccc--------CCccccc---c-eeeehhhcCCchHH
Confidence 3445677888888999999998663 222 3344444 5 67778888887765
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.31 E-value=3.6e-13 Score=129.88 Aligned_cols=182 Identities=19% Similarity=0.210 Sum_probs=125.9
Q ss_pred hhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh
Q 048772 101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG 180 (333)
Q Consensus 101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~ 180 (333)
.+|.++..+.+|..+....|.+ ..+|..+..+..|++|+...|.++.+|+....+++|++|+|.. +.+..+|..
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l-----~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~ 328 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRL-----VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDN 328 (1081)
T ss_pred cchHHHHhcccceEecccchhH-----HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh-ccccccchH
Confidence 4556777778888888888877 6777777777777777777777777887777788888888877 555555443
Q ss_pred h--------------------------------------------------hcCCCCCeeecccccccccCchh-hcCCC
Q 048772 181 M--------------------------------------------------EKLMNLRHLIIMNHVYLEYMPRG-IERLT 209 (333)
Q Consensus 181 ~--------------------------------------------------~~L~~L~~L~l~~~~~l~~~p~~-i~~L~ 209 (333)
+ .+.++|+.|++++|. +..+|.. +.++.
T Consensus 329 ~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle 407 (1081)
T KOG0618|consen 329 FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLE 407 (1081)
T ss_pred HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchH
Confidence 2 344568888888887 7888865 77888
Q ss_pred CCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCcc
Q 048772 210 GLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEE 289 (333)
Q Consensus 210 ~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 289 (333)
.|++|+++++.... .+..+..++.|+.|+. . .+....+| ++..++.|+.+++++|..+
T Consensus 408 ~LeeL~LSGNkL~~-----Lp~tva~~~~L~tL~a----h-----sN~l~~fP-e~~~l~qL~~lDlS~N~L~------- 465 (1081)
T KOG0618|consen 408 ELEELNLSGNKLTT-----LPDTVANLGRLHTLRA----H-----SNQLLSFP-ELAQLPQLKVLDLSCNNLS------- 465 (1081)
T ss_pred HhHHHhcccchhhh-----hhHHHHhhhhhHHHhh----c-----CCceeech-hhhhcCcceEEecccchhh-------
Confidence 88888888776654 3444555555555552 1 22334455 7888999999999988411
Q ss_pred chHHHHHHhhhccCCCCCCCceeeEEeeec
Q 048772 290 NDEAITKIAKSVRVCLLWDNCHPLKYSRYG 319 (333)
Q Consensus 290 ~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~ 319 (333)
.. ......| .++||+|+++||.
T Consensus 466 -~~----~l~~~~p---~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 466 -EV----TLPEALP---SPNLKYLDLSGNT 487 (1081)
T ss_pred -hh----hhhhhCC---CcccceeeccCCc
Confidence 11 2233334 4899999999986
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.27 E-value=5.1e-13 Score=123.13 Aligned_cols=190 Identities=17% Similarity=0.196 Sum_probs=85.2
Q ss_pred HhhhcccccceEeeccccccccCCCcchH-hhcccccCeeeccCCcCccc-chhhhccc---------------------
Q 048772 105 VFKQFTCLRALRICGENVWEIGNSKIPKA-MKNLIHLRFLKLSWLRIKEL-PETCCELI--------------------- 161 (333)
Q Consensus 105 ~~~~~~~L~~L~l~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~l-p~~i~~L~--------------------- 161 (333)
.|.++.+|-+|.++.|++ ..+|.. |+++++|+.|+|..|+|... --.+..|.
T Consensus 192 ~F~~lnsL~tlkLsrNri-----ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy 266 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRI-----TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY 266 (873)
T ss_pred cccccchheeeecccCcc-----cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCccee
Confidence 344555555566666655 444432 34456666666555554433 12333343
Q ss_pred ---cCcEEeccCCCCCCcCCh-hhhcCCCCCeeecccccccccC-chhhcCCCCCCccceEEeCCCCCcccCcccchhhh
Q 048772 162 ---NLETLEINRCTRLKRLPQ-GMEKLMNLRHLIIMNHVYLEYM-PRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEAL 236 (333)
Q Consensus 162 ---~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L 236 (333)
++++|+|.. |.+.++.+ ++.+|+.|++|++++|. +..+ ++++.-.++|..|++..+.... ..+..+..|
T Consensus 267 ~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~----l~~~sf~~L 340 (873)
T KOG4194|consen 267 GLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITR----LDEGSFRVL 340 (873)
T ss_pred eecccceeeccc-chhhhhhcccccccchhhhhccchhh-hheeecchhhhcccceeEecccccccc----CChhHHHHH
Confidence 444444444 33333332 23445555555555554 2222 2334444555555555444433 122333333
Q ss_pred cCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEe
Q 048772 237 KGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYS 316 (333)
Q Consensus 237 ~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~ 316 (333)
..|..|. |..+. ........+..+++|++|+|+.|..+.. -++ .-..+.. +++|+.|.+.
T Consensus 341 ~~Le~Ln--Ls~Ns------i~~l~e~af~~lssL~~LdLr~N~ls~~-----IED----aa~~f~g---l~~LrkL~l~ 400 (873)
T KOG4194|consen 341 SQLEELN--LSHNS------IDHLAEGAFVGLSSLHKLDLRSNELSWC-----IED----AAVAFNG---LPSLRKLRLT 400 (873)
T ss_pred HHhhhhc--ccccc------hHHHHhhHHHHhhhhhhhcCcCCeEEEE-----Eec----chhhhcc---chhhhheeec
Confidence 3333333 22222 1122223445566666666665432211 011 1122233 5566777777
Q ss_pred eecChhhhhh
Q 048772 317 RYGIWIVWKE 326 (333)
Q Consensus 317 ~~~~~~~~p~ 326 (333)
||++.. +|.
T Consensus 401 gNqlk~-I~k 409 (873)
T KOG4194|consen 401 GNQLKS-IPK 409 (873)
T ss_pred Cceeee-cch
Confidence 766665 554
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.24 E-value=6.6e-12 Score=125.74 Aligned_cols=91 Identities=31% Similarity=0.468 Sum_probs=80.3
Q ss_pred hhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh
Q 048772 101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG 180 (333)
Q Consensus 101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~ 180 (333)
....+|..++.|++|++++|.-. ..+|..|+.+.+||||+++++.++.+|..+++|..|.+|++..+..+..+|..
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~l----~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSSL----SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCcc----CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccch
Confidence 34556888999999999987653 88999999999999999999999999999999999999999996666677777
Q ss_pred hhcCCCCCeeecccc
Q 048772 181 MEKLMNLRHLIIMNH 195 (333)
Q Consensus 181 ~~~L~~L~~L~l~~~ 195 (333)
+..|.+|++|.+...
T Consensus 638 ~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRS 652 (889)
T ss_pred hhhcccccEEEeecc
Confidence 777999999998764
No 16
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=4.9e-13 Score=122.83 Aligned_cols=157 Identities=28% Similarity=0.373 Sum_probs=134.4
Q ss_pred hhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh
Q 048772 101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG 180 (333)
Q Consensus 101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~ 180 (333)
.+|.-+..|..|..+.++.|.+ ..+|..++.+..|.+++|+.|+++.+|..++.|+ |+.|.+++ ++++.+|..
T Consensus 89 elp~~~~~f~~Le~liLy~n~~-----r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ 161 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCI-----RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEE 161 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccc-----eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcc
Confidence 4455566788899999999998 8899999999999999999999999999998887 89999998 889999999
Q ss_pred hhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhh
Q 048772 181 MEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEA 260 (333)
Q Consensus 181 ~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~ 260 (333)
++.+.+|.+|+.+.|. +..+|..++.|.+|+.|....+... ..+.++..|+-.+ |+++. +....
T Consensus 162 ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~--------~lp~El~~LpLi~--lDfSc-----Nkis~ 225 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLE--------DLPEELCSLPLIR--LDFSC-----NKISY 225 (722)
T ss_pred cccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhh--------hCCHHHhCCceee--eeccc-----Cceee
Confidence 9999999999999998 8999999999999999998766644 3566777776444 88875 34567
Q ss_pred hhhcCcccCCCCceEEEecc
Q 048772 261 KHVDLKEKKNLDRLELWFDN 280 (333)
Q Consensus 261 ~~~~l~~l~~L~~L~l~~~~ 280 (333)
+|..+.+|++||+|.|..|-
T Consensus 226 iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred cchhhhhhhhheeeeeccCC
Confidence 88999999999999999774
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.19 E-value=9.5e-12 Score=112.21 Aligned_cols=204 Identities=20% Similarity=0.151 Sum_probs=134.9
Q ss_pred hhhhHhhhcccccceEeecccccc--ccCCCcchHhhcccccCeeeccCCcCc-ccchhhhcccc---CcEEeccCCCCC
Q 048772 101 ELEDVFKQFTCLRALRICGENVWE--IGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELIN---LETLEINRCTRL 174 (333)
Q Consensus 101 ~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~---L~~L~l~~~~~~ 174 (333)
.+...+...+.++.|+++++.+-. ..-..++..+..+++|+.|++++|.+. ..+..+..+.. |++|++++|. +
T Consensus 42 ~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~ 120 (319)
T cd00116 42 ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-L 120 (319)
T ss_pred HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-c
Confidence 355666777889999999887620 000124456777889999999999976 45666766666 9999999944 4
Q ss_pred C-----cCChhhhcC-CCCCeeecccccccc-----cCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCccccc
Q 048772 175 K-----RLPQGMEKL-MNLRHLIIMNHVYLE-----YMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLR 243 (333)
Q Consensus 175 ~-----~lp~~~~~L-~~L~~L~l~~~~~l~-----~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 243 (333)
. .+...+..+ ++|+.|++++|. +. .++..+..+++|++|++..+..... ........+..++.|+
T Consensus 121 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~l~~~l~~~~~L~ 196 (319)
T cd00116 121 GDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDA---GIRALAEGLKANCNLE 196 (319)
T ss_pred chHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchH---HHHHHHHHHHhCCCCC
Confidence 4 234456677 899999999998 44 3445577888999999987765430 0112233455556777
Q ss_pred ceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhcc-CCCCCCCceeeEEeeecCh
Q 048772 244 GLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVR-VCLLWDNCHPLKYSRYGIW 321 (333)
Q Consensus 244 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~L~~L~l~~~~~~ 321 (333)
. |++.+..-.......+...+..+++|++|++++|.... ..+..+...+. + .+.|++|++.+|...
T Consensus 197 ~-L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~--------~~~~~l~~~~~~~---~~~L~~L~l~~n~i~ 263 (319)
T cd00116 197 V-LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD--------AGAAALASALLSP---NISLLTLSLSCNDIT 263 (319)
T ss_pred E-EeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch--------HHHHHHHHHHhcc---CCCceEEEccCCCCC
Confidence 6 77776432222334455667788999999999874221 11111333221 3 578999999999764
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.15 E-value=5.6e-11 Score=117.37 Aligned_cols=80 Identities=15% Similarity=0.352 Sum_probs=35.2
Q ss_pred cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCee
Q 048772 111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHL 190 (333)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L 190 (333)
.|+.|++++|.+ ..+|..+. .+|+.|++++|.++.+|..+. .+|+.|++++ +.+..+|..+. .+|+.|
T Consensus 200 ~L~~L~Ls~N~L-----tsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~-N~L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 200 QITTLILDNNEL-----KSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSI-NRITELPERLP--SALQSL 267 (754)
T ss_pred CCcEEEecCCCC-----CcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcC-CccCcCChhHh--CCCCEE
Confidence 355555555554 44444332 245555555555544444332 2344444444 33444444332 244444
Q ss_pred ecccccccccCch
Q 048772 191 IIMNHVYLEYMPR 203 (333)
Q Consensus 191 ~l~~~~~l~~~p~ 203 (333)
++++|. +..+|.
T Consensus 268 ~Ls~N~-L~~LP~ 279 (754)
T PRK15370 268 DLFHNK-ISCLPE 279 (754)
T ss_pred ECcCCc-cCcccc
Confidence 444443 334443
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.15 E-value=1.3e-11 Score=119.28 Aligned_cols=207 Identities=23% Similarity=0.261 Sum_probs=135.5
Q ss_pred hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCC
Q 048772 107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMN 186 (333)
Q Consensus 107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~ 186 (333)
.+.-+|++|++++|.+ ..+|..+..+.+|+.|+++.|.|.+.|.+++++.+|++|.|.+ +.+..+|.++..+++
T Consensus 42 ~~~v~L~~l~lsnn~~-----~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQI-----SSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKN 115 (1081)
T ss_pred hheeeeEEeecccccc-----ccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhc
Confidence 3444599999999998 8999999999999999999999999999999999999999997 889999999999999
Q ss_pred CCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcc------------cCcccchhhhcCcccccceeEEcccCCC
Q 048772 187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEH------------ASKVCKLEALKGMNHLRGLLKIRMLGDL 254 (333)
Q Consensus 187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~------------~~~~~~~~~L~~L~~L~~~L~~~~~~~~ 254 (333)
|+.|+++.|. +..+|.-+..++.+..+...++....... ......+.....++. . +++...+
T Consensus 116 l~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~-ldLr~N~-- 189 (1081)
T KOG0618|consen 116 LQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--Q-LDLRYNE-- 189 (1081)
T ss_pred ccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--e-eecccch--
Confidence 9999999998 78888877777777666665441111000 000122223333333 1 3333211
Q ss_pred CCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHH---HHhhhccCCCCCCCceeeEEeeecChhhhhhhHhhh
Q 048772 255 ANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAIT---KIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNF 331 (333)
Q Consensus 255 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~l 331 (333)
.....+..+.+|+.|....|..+........-..+. .-+..+-+...+.+|+.++++.+.... +|+|++..
T Consensus 190 -----~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~ 263 (1081)
T KOG0618|consen 190 -----MEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGAC 263 (1081)
T ss_pred -----hhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhc
Confidence 012334455555555555443322111110000000 011122221236799999999999988 99999864
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.14 E-value=2.9e-11 Score=109.06 Aligned_cols=199 Identities=18% Similarity=0.138 Sum_probs=127.3
Q ss_pred hhhHhhhcccccceEeeccccccccCCCcchHhhcccc---cCeeeccCCcCc-----ccchhhhcc-ccCcEEeccCCC
Q 048772 102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIH---LRFLKLSWLRIK-----ELPETCCEL-INLETLEINRCT 172 (333)
Q Consensus 102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~---L~~L~l~~~~i~-----~lp~~i~~L-~~L~~L~l~~~~ 172 (333)
+...+..+++|+.|++++|.+. ...+..+..+.. |++|++++|.++ .+...+..+ ++|+.|++++|.
T Consensus 73 ~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 73 LLQGLTKGCGLQELDLSDNALG----PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHhcCceeEEEccCCCCC----hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 4456677889999999998872 234555655555 999999998876 334556677 899999999944
Q ss_pred CCC-----cCChhhhcCCCCCeeecccccccc-----cCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccc
Q 048772 173 RLK-----RLPQGMEKLMNLRHLIIMNHVYLE-----YMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHL 242 (333)
Q Consensus 173 ~~~-----~lp~~~~~L~~L~~L~l~~~~~l~-----~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L 242 (333)
+. .++..+..+.+|++|++++|. +. .++..+..+++|++|++.++...... .......+..+++|
T Consensus 149 -l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~---~~~l~~~~~~~~~L 223 (319)
T cd00116 149 -LEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG---ASALAETLASLKSL 223 (319)
T ss_pred -CCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHH---HHHHHHHhcccCCC
Confidence 44 345557778899999999887 43 34445666779999998877654300 01123345566778
Q ss_pred cceeEEcccCCCCC-chhhhhhcC-cccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecC
Q 048772 243 RGLLKIRMLGDLAN-VDEAKHVDL-KEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGI 320 (333)
Q Consensus 243 ~~~L~~~~~~~~~~-~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~ 320 (333)
+. |++.+..- .. ....+...+ ...+.|++|++++|.+... ....+...+.. .++|+.+++++|..
T Consensus 224 ~~-L~ls~n~l-~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~--------~~~~l~~~~~~---~~~L~~l~l~~N~l 290 (319)
T cd00116 224 EV-LNLGDNNL-TDAGAAALASALLSPNISLLTLSLSCNDITDD--------GAKDLAEVLAE---KESLLELDLRGNKF 290 (319)
T ss_pred CE-EecCCCcC-chHHHHHHHHHHhccCCCceEEEccCCCCCcH--------HHHHHHHHHhc---CCCccEEECCCCCC
Confidence 86 88876321 11 111111111 1247899999998753211 11114445555 67899999998877
Q ss_pred hh
Q 048772 321 WI 322 (333)
Q Consensus 321 ~~ 322 (333)
..
T Consensus 291 ~~ 292 (319)
T cd00116 291 GE 292 (319)
T ss_pred cH
Confidence 53
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=4.5e-12 Score=116.63 Aligned_cols=181 Identities=23% Similarity=0.251 Sum_probs=148.0
Q ss_pred ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCe
Q 048772 110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRH 189 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~ 189 (333)
.--...+++.|.+ ..+|..+..+..|..+.++.|.+..+|..+++|..|.+||++. +.+..+|..++.|+ |+.
T Consensus 75 tdt~~aDlsrNR~-----~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 75 TDTVFADLSRNRF-----SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKV 147 (722)
T ss_pred cchhhhhcccccc-----ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-cee
Confidence 3345678888988 8999999999999999999999999999999999999999999 88999999998885 999
Q ss_pred eecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccC
Q 048772 190 LIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKK 269 (333)
Q Consensus 190 L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 269 (333)
|.+++|. ++.+|..++.+..|.+|+...+... ..+.+++.|..|+. |.+.. +....++.++..++
T Consensus 148 li~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~--------slpsql~~l~slr~-l~vrR-----n~l~~lp~El~~Lp 212 (722)
T KOG0532|consen 148 LIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQ--------SLPSQLGYLTSLRD-LNVRR-----NHLEDLPEELCSLP 212 (722)
T ss_pred EEEecCc-cccCCcccccchhHHHhhhhhhhhh--------hchHHhhhHHHHHH-HHHhh-----hhhhhCCHHHhCCc
Confidence 9999988 8999999998899999998776644 35566777777775 55543 34456778888665
Q ss_pred CCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhh
Q 048772 270 NLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMN 330 (333)
Q Consensus 270 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~ 330 (333)
|..|++++|+ ... ++-.+.. +..|++|-|.+|.+.. -|.-|+.
T Consensus 213 -Li~lDfScNk-----is~--------iPv~fr~---m~~Lq~l~LenNPLqS-PPAqIC~ 255 (722)
T KOG0532|consen 213 -LIRLDFSCNK-----ISY--------LPVDFRK---MRHLQVLQLENNPLQS-PPAQICE 255 (722)
T ss_pred -eeeeecccCc-----eee--------cchhhhh---hhhheeeeeccCCCCC-ChHHHHh
Confidence 8899999985 222 5556666 8899999999999987 7777653
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.07 E-value=2.6e-10 Score=112.72 Aligned_cols=168 Identities=20% Similarity=0.245 Sum_probs=110.1
Q ss_pred ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCe
Q 048772 110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRH 189 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~ 189 (333)
++|++|++++|.+ ..+|..+. .+|+.|++++|.+..+|..+. .+|++|++++ +.+..+|..+. .+|++
T Consensus 220 ~nL~~L~Ls~N~L-----tsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~ 287 (754)
T PRK15370 220 GNIKTLYANSNQL-----TSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRY 287 (754)
T ss_pred cCCCEEECCCCcc-----ccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcE
Confidence 5788888888887 66776554 368888888888888887664 4788888886 67788887654 47888
Q ss_pred eecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccC
Q 048772 190 LIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKK 269 (333)
Q Consensus 190 L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 269 (333)
|++++|. +..+|..+. ++|+.|++.++.... .+..+ . +.|+. |.+.... ...++..+ .+
T Consensus 288 L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~-----LP~~l--~---~sL~~-L~Ls~N~-----Lt~LP~~l--~~ 346 (754)
T PRK15370 288 LSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTA-----LPETL--P---PGLKT-LEAGENA-----LTSLPASL--PP 346 (754)
T ss_pred EECCCCc-cccCcccch--hhHHHHHhcCCcccc-----CCccc--c---cccee-ccccCCc-----cccCChhh--cC
Confidence 8888886 777776543 367777777665443 11111 1 23443 4444321 11133333 25
Q ss_pred CCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHh
Q 048772 270 NLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVM 329 (333)
Q Consensus 270 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~ 329 (333)
+|+.|+++.|... . ++.. ++++|+.|+|++|.+.. +|..+.
T Consensus 347 sL~~L~Ls~N~L~-----~--------LP~~-----lp~~L~~LdLs~N~Lt~-LP~~l~ 387 (754)
T PRK15370 347 ELQVLDVSKNQIT-----V--------LPET-----LPPTITTLDVSRNALTN-LPENLP 387 (754)
T ss_pred cccEEECCCCCCC-----c--------CChh-----hcCCcCEEECCCCcCCC-CCHhHH
Confidence 7888999877421 1 2222 24589999999999888 887664
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.07 E-value=1.1e-11 Score=109.40 Aligned_cols=116 Identities=22% Similarity=0.278 Sum_probs=86.4
Q ss_pred cchhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccC-CcCcccc-hhhhccccCcEEeccCCCCCC
Q 048772 98 EKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSW-LRIKELP-ETCCELINLETLEINRCTRLK 175 (333)
Q Consensus 98 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~-~~i~~lp-~~i~~L~~L~~L~l~~~~~~~ 175 (333)
+...++.+|+.+++||.|+++.|.|. ..-|+.|..++.|..|-+.+ |.|+.+| ..+++|..|+.|.+.- +.+.
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is----~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa-n~i~ 153 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNIS----FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA-NHIN 153 (498)
T ss_pred cccCChhhccchhhhceecccccchh----hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh-hhhc
Confidence 33456778899999999999999882 22367788888887776666 7799998 5778888888888887 5555
Q ss_pred cCC-hhhhcCCCCCeeecccccccccCch-hhcCCCCCCccceEEe
Q 048772 176 RLP-QGMEKLMNLRHLIIMNHVYLEYMPR-GIERLTGLRTLSEFVV 219 (333)
Q Consensus 176 ~lp-~~~~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~ 219 (333)
-++ ..+..|++|..|.+..|. +..++. .+..+.+++++++..+
T Consensus 154 Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 154 CIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred chhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcC
Confidence 544 457788888888887776 677776 3777777777776443
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=4.6e-10 Score=104.49 Aligned_cols=178 Identities=26% Similarity=0.323 Sum_probs=136.6
Q ss_pred hhcccccceEeeccccccccCCCcchHhhccc-ccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772 107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLI-HLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM 185 (333)
Q Consensus 107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~ 185 (333)
..++.+..|++.++.+ ..+|.....+. +|+.|++++|.+..+|..++.+++|+.|+++. +.+.++|...+.++
T Consensus 113 ~~~~~l~~L~l~~n~i-----~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~ 186 (394)
T COG4886 113 LELTNLTSLDLDNNNI-----TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLS 186 (394)
T ss_pred hcccceeEEecCCccc-----ccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhh
Confidence 4557789999999998 88888888785 99999999999999998899999999999999 88999998888999
Q ss_pred CCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772 186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL 265 (333)
Q Consensus 186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l 265 (333)
+|+.|++++|. +..+|..++.+..|++|.+..+... ..+..+.++..+.. +.+.. +.....+..+
T Consensus 187 ~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~--------~~~~~~~~~~~l~~-l~l~~-----n~~~~~~~~~ 251 (394)
T COG4886 187 NLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSII--------ELLSSLSNLKNLSG-LELSN-----NKLEDLPESI 251 (394)
T ss_pred hhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcce--------ecchhhhhcccccc-cccCC-----ceeeeccchh
Confidence 99999999998 8999988878888999988766322 23334455555554 44222 1222235678
Q ss_pred cccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChh
Q 048772 266 KEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWI 322 (333)
Q Consensus 266 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~ 322 (333)
+.+.+++.|+++.|.... +. .+.+ ..+|+.|+++++....
T Consensus 252 ~~l~~l~~L~~s~n~i~~-------------i~-~~~~---~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 252 GNLSNLETLDLSNNQISS-------------IS-SLGS---LTNLRELDLSGNSLSN 291 (394)
T ss_pred ccccccceeccccccccc-------------cc-cccc---cCccCEEeccCccccc
Confidence 888889999999774211 22 2555 7899999999987765
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=3.3e-10 Score=92.16 Aligned_cols=106 Identities=27% Similarity=0.343 Sum_probs=35.9
Q ss_pred hcccccceEeeccccccccCCCcchHhh-cccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhh-hcCC
Q 048772 108 QFTCLRALRICGENVWEIGNSKIPKAMK-NLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGM-EKLM 185 (333)
Q Consensus 108 ~~~~L~~L~l~~~~~~~~~~~~lp~~~~-~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~-~~L~ 185 (333)
+...++.|++.++.+ ..+. .++ .+.+|+.|++++|.|+.++ .+..+++|++|++++ |.++.++..+ ..++
T Consensus 17 n~~~~~~L~L~~n~I-----~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp 88 (175)
T PF14580_consen 17 NPVKLRELNLRGNQI-----STIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLP 88 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-T
T ss_pred ccccccccccccccc-----cccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCC
Confidence 344678888888887 4442 354 4677888888888887776 466778888888887 7787776655 3578
Q ss_pred CCCeeecccccccccCc--hhhcCCCCCCccceEEeCCC
Q 048772 186 NLRHLIIMNHVYLEYMP--RGIERLTGLRTLSEFVVGRT 222 (333)
Q Consensus 186 ~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~ 222 (333)
+|++|++++|. +..+- ..+..+++|++|++.+++.+
T Consensus 89 ~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 89 NLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp T--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCccc
Confidence 88888888776 44433 23566777777777666554
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.91 E-value=2.9e-09 Score=105.07 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=14.6
Q ss_pred CCceeeEEeeecChhhhhhhHhh
Q 048772 308 DNCHPLKYSRYGIWIVWKEWVMN 330 (333)
Q Consensus 308 ~~L~~L~l~~~~~~~~~p~w~~~ 330 (333)
.+|+.|++++|.+.. +|..++.
T Consensus 422 ~~L~~L~Ls~NqLt~-LP~sl~~ 443 (788)
T PRK15387 422 SGLLSLSVYRNQLTR-LPESLIH 443 (788)
T ss_pred hhhhhhhhccCcccc-cChHHhh
Confidence 456677777777766 7766554
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=5.7e-10 Score=90.76 Aligned_cols=137 Identities=21% Similarity=0.260 Sum_probs=49.0
Q ss_pred CCcchHhhcccccCeeeccCCcCcccchhhh-ccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhh-
Q 048772 128 SKIPKAMKNLIHLRFLKLSWLRIKELPETCC-ELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGI- 205 (333)
Q Consensus 128 ~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~-~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i- 205 (333)
+..| .+.+...++.|+|.+|.|+.+. .++ .+.+|+.|++++ +.++.++ .+..|++|+.|++++|. +..++.++
T Consensus 10 ~~~~-~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~-N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~ 84 (175)
T PF14580_consen 10 EQIA-QYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSN-NQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLD 84 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TT-S--S--T-T----TT--EEE--SS----S-CHHHH
T ss_pred cccc-cccccccccccccccccccccc-chhhhhcCCCEEECCC-CCCcccc-CccChhhhhhcccCCCC-CCccccchH
Confidence 4444 3455567899999999998875 465 689999999999 7898886 58899999999999998 78887666
Q ss_pred cCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEE
Q 048772 206 ERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELW 277 (333)
Q Consensus 206 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 277 (333)
..+++|++|++.++.... ...+..|..+++|+. |++.+..- .....--...+..+++|+.|+-.
T Consensus 85 ~~lp~L~~L~L~~N~I~~------l~~l~~L~~l~~L~~-L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISD------LNELEPLSSLPKLRV-LSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HH-TT--EEE-TTS---S------CCCCGGGGG-TT--E-EE-TT-GG-GGSTTHHHHHHHH-TT-SEETTE
T ss_pred HhCCcCCEEECcCCcCCC------hHHhHHHHcCCCcce-eeccCCcc-cchhhHHHHHHHHcChhheeCCE
Confidence 469999999998776654 344666677777776 76665221 11112222334556777766554
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.86 E-value=3.4e-09 Score=104.60 Aligned_cols=90 Identities=28% Similarity=0.265 Sum_probs=42.6
Q ss_pred cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCee
Q 048772 111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHL 190 (333)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L 190 (333)
+|+.|++.+|++ ..+|.. +++|++|++++|.++.+|.. ..+|+.|+++. +.+..+|.. ..+|+.|
T Consensus 223 ~L~~L~L~~N~L-----t~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~-N~L~~Lp~l---p~~L~~L 287 (788)
T PRK15387 223 HITTLVIPDNNL-----TSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFS-NPLTHLPAL---PSGLCKL 287 (788)
T ss_pred CCCEEEccCCcC-----CCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccC-Cchhhhhhc---hhhcCEE
Confidence 455566666655 444432 35566666666666655532 23444555554 334444431 1234444
Q ss_pred ecccccccccCchhhcCCCCCCccceEEe
Q 048772 191 IIMNHVYLEYMPRGIERLTGLRTLSEFVV 219 (333)
Q Consensus 191 ~l~~~~~l~~~p~~i~~L~~L~~L~~~~~ 219 (333)
++++|. +..+|.. +++|+.|++.++
T Consensus 288 ~Ls~N~-Lt~LP~~---p~~L~~LdLS~N 312 (788)
T PRK15387 288 WIFGNQ-LTSLPVL---PPGLQELSVSDN 312 (788)
T ss_pred ECcCCc-ccccccc---ccccceeECCCC
Confidence 444444 3444431 234555554444
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.76 E-value=5.2e-10 Score=99.06 Aligned_cols=105 Identities=26% Similarity=0.353 Sum_probs=88.2
Q ss_pred cccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChh-hhcCCCC
Q 048772 111 CLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQG-MEKLMNL 187 (333)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L 187 (333)
....++|..|+| +.+|+ .|+.+++||.|||+.|.|+.| |..+..|..|..|-+.++++|+.+|.. |++|.+|
T Consensus 68 ~tveirLdqN~I-----~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQI-----SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred cceEEEeccCCc-----ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 345789999999 77775 578999999999999999976 688999999988888877999999975 8899999
Q ss_pred CeeecccccccccCc-hhhcCCCCCCccceEEeCC
Q 048772 188 RHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGR 221 (333)
Q Consensus 188 ~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~ 221 (333)
+.|.+.-|. +.-++ ..+..|++|..|.++++..
T Consensus 143 qrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 143 QRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred HHHhcChhh-hcchhHHHHHHhhhcchhcccchhh
Confidence 999988776 45555 4489999999999887643
No 30
>PLN03150 hypothetical protein; Provisional
Probab=98.75 E-value=1.8e-08 Score=98.81 Aligned_cols=106 Identities=18% Similarity=0.256 Sum_probs=87.0
Q ss_pred cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCe
Q 048772 111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRH 189 (333)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~ 189 (333)
.++.|+++++.+. ..+|..++.+++|+.|+|++|.+. .+|..++.+.+|++|++++|.....+|..+++|++|++
T Consensus 419 ~v~~L~L~~n~L~----g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLR----GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCcc----ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 3677888888872 678889999999999999999987 88989999999999999995544588999999999999
Q ss_pred eecccccccccCchhhcCC-CCCCccceEEeC
Q 048772 190 LIIMNHVYLEYMPRGIERL-TGLRTLSEFVVG 220 (333)
Q Consensus 190 L~l~~~~~l~~~p~~i~~L-~~L~~L~~~~~~ 220 (333)
|++++|.....+|..++.+ .++..+++.++.
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCc
Confidence 9999998667899887754 355666655443
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=4.1e-09 Score=90.48 Aligned_cols=104 Identities=25% Similarity=0.301 Sum_probs=59.0
Q ss_pred hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCC
Q 048772 107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMN 186 (333)
Q Consensus 107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~ 186 (333)
...+.|..+++++|.+ ..+-.++.-++.+|+|+++.|.+..+-. +..|++|+.|||++ |.+.++-.+-.+|-|
T Consensus 281 dTWq~LtelDLS~N~I-----~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLI-----TQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGN 353 (490)
T ss_pred chHhhhhhccccccch-----hhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcC
Confidence 3446677777777777 5666666667777777777777665544 66777777777777 444444332233444
Q ss_pred CCeeecccccccccCchhhcCCCCCCccceEEe
Q 048772 187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVV 219 (333)
Q Consensus 187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~ 219 (333)
.+.|.+++|. +..+ .++++|-+|..|++.++
T Consensus 354 IKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 354 IKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSN 384 (490)
T ss_pred Eeeeehhhhh-Hhhh-hhhHhhhhheecccccc
Confidence 4444444443 2222 23444444444444433
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.62 E-value=2e-08 Score=93.55 Aligned_cols=159 Identities=21% Similarity=0.320 Sum_probs=122.6
Q ss_pred hhhhhHhhhcc-cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCC
Q 048772 100 KELEDVFKQFT-CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLP 178 (333)
Q Consensus 100 ~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp 178 (333)
..++.....++ +|+.|++++|.+ ..+|..++.++.|+.|+++.|.+..+|...+.+..|+.|++++ +.+..+|
T Consensus 129 ~~i~~~~~~~~~nL~~L~l~~N~i-----~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~ 202 (394)
T COG4886 129 TDIPPLIGLLKSNLKELDLSDNKI-----ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG-NKISDLP 202 (394)
T ss_pred ccCccccccchhhcccccccccch-----hhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC-CccccCc
Confidence 44555555564 899999999999 8887789999999999999999999999888999999999999 8899999
Q ss_pred hhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCch
Q 048772 179 QGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVD 258 (333)
Q Consensus 179 ~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~ 258 (333)
..+..+.+|..|.+++|. ....+..+.+++++..|.+..+.... .+..++.+..++. |++.+..-
T Consensus 203 ~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~--------~~~~~~~l~~l~~-L~~s~n~i----- 267 (394)
T COG4886 203 PEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLED--------LPESIGNLSNLET-LDLSNNQI----- 267 (394)
T ss_pred hhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeee--------ccchhccccccce-eccccccc-----
Confidence 988888889999999996 56677778888888888754443221 1344455555665 55554221
Q ss_pred hhhhhcCcccCCCCceEEEecc
Q 048772 259 EAKHVDLKEKKNLDRLELWFDN 280 (333)
Q Consensus 259 ~~~~~~l~~l~~L~~L~l~~~~ 280 (333)
.... .++.+.+|+.|+++++.
T Consensus 268 ~~i~-~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 268 SSIS-SLGSLTNLRELDLSGNS 288 (394)
T ss_pred cccc-cccccCccCEEeccCcc
Confidence 1222 27888999999998764
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.57 E-value=7.6e-09 Score=88.89 Aligned_cols=134 Identities=17% Similarity=0.135 Sum_probs=85.9
Q ss_pred hhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhcCCCCCCc
Q 048772 134 MKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRT 213 (333)
Q Consensus 134 ~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~ 213 (333)
+.-.+.|..+|+++|.|+.+-+++.-++.++.|+++. |.+..+-. +..|++|++||+++|. +.++-.+-.+|-++.+
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQ-NRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccc-cceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEee
Confidence 3334567888888888888888888888888888888 66766644 7788888888888887 6666544456777777
Q ss_pred cceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCC
Q 048772 214 LSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGM 283 (333)
Q Consensus 214 L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 283 (333)
|.+..+.... +..|.+|-.|-. |++...+ + ..-.....+++++.|++|.|..|..+.
T Consensus 357 L~La~N~iE~---------LSGL~KLYSLvn-LDl~~N~-I--e~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 357 LKLAQNKIET---------LSGLRKLYSLVN-LDLSSNQ-I--EELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eehhhhhHhh---------hhhhHhhhhhee-ccccccc-h--hhHHHhcccccccHHHHHhhcCCCccc
Confidence 7776544322 222223323322 3333211 0 111234578888888888888775443
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.52 E-value=7.6e-08 Score=64.35 Aligned_cols=57 Identities=35% Similarity=0.534 Sum_probs=32.5
Q ss_pred ccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hhhcCCCCCeeeccccc
Q 048772 139 HLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GMEKLMNLRHLIIMNHV 196 (333)
Q Consensus 139 ~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~l~~~~ 196 (333)
+|++|++++|.++.+| ..+.++++|++|++++ +.+..+|. .|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4556666666666555 3455566666666665 44555543 35566666666666553
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.49 E-value=3.2e-07 Score=90.06 Aligned_cols=99 Identities=18% Similarity=0.355 Sum_probs=83.9
Q ss_pred hhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCCcCC
Q 048772 100 KELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLKRLP 178 (333)
Q Consensus 100 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp 178 (333)
..++..+.++++|+.|++++|.+. ..+|..++.+++|+.|++++|.++ .+|..+++|++|++|++++|.....+|
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~l~----g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP 507 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNSIR----GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCccc----CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC
Confidence 456777889999999999999982 578999999999999999999987 799999999999999999966556899
Q ss_pred hhhhcC-CCCCeeecccccccccCc
Q 048772 179 QGMEKL-MNLRHLIIMNHVYLEYMP 202 (333)
Q Consensus 179 ~~~~~L-~~L~~L~l~~~~~l~~~p 202 (333)
..++.+ .++..+++.+|..+...|
T Consensus 508 ~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 508 AALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred hHHhhccccCceEEecCCccccCCC
Confidence 988764 477889998887554444
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=5.8e-08 Score=87.34 Aligned_cols=84 Identities=21% Similarity=0.225 Sum_probs=39.2
Q ss_pred hhcccccceEeeccccccccCCCcc--hHhhcccccCeeeccCCcCc---ccchhhhccccCcEEeccCCCCCCcCChh-
Q 048772 107 KQFTCLRALRICGENVWEIGNSKIP--KAMKNLIHLRFLKLSWLRIK---ELPETCCELINLETLEINRCTRLKRLPQG- 180 (333)
Q Consensus 107 ~~~~~L~~L~l~~~~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~---~lp~~i~~L~~L~~L~l~~~~~~~~lp~~- 180 (333)
+++++||...+.++.+ ...+ .....+++++.|||+.|-+. .+-..+.+|++|+.|+++. |++....++
T Consensus 118 sn~kkL~~IsLdn~~V-----~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV-----EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSN 191 (505)
T ss_pred hhHHhhhheeecCccc-----cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCcccc
Confidence 3445555555555554 3322 13445555555555555433 2223344555555555555 333222111
Q ss_pred -hhcCCCCCeeeccccc
Q 048772 181 -MEKLMNLRHLIIMNHV 196 (333)
Q Consensus 181 -~~~L~~L~~L~l~~~~ 196 (333)
-..+++|+.|.++.|.
T Consensus 192 ~~~~l~~lK~L~l~~CG 208 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCG 208 (505)
T ss_pred chhhhhhhheEEeccCC
Confidence 1234455555555554
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.44 E-value=1.6e-07 Score=62.75 Aligned_cols=57 Identities=26% Similarity=0.454 Sum_probs=50.8
Q ss_pred ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCC
Q 048772 110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRC 171 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~ 171 (333)
++|++|++++|++ ..+|+ .+..+++|++|++++|.++.+| ..+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l-----~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKL-----TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTE-----SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCC-----CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 5789999999998 77774 6788999999999999999888 57899999999999994
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=6e-08 Score=87.26 Aligned_cols=115 Identities=19% Similarity=0.177 Sum_probs=57.0
Q ss_pred hhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc--ccchhhhccccCcEEeccCCCCCCcCChh
Q 048772 103 EDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK--ELPETCCELINLETLEINRCTRLKRLPQG 180 (333)
Q Consensus 103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~~lp~~ 180 (333)
-.+..++++|+.|+++.|.+....++.. -..+.+|+.|.++.|.++ .+-.....+++|+.|+|..|+.+..--.+
T Consensus 165 ~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~ 241 (505)
T KOG3207|consen 165 LKIAEQLPSLENLNLSSNRLSNFISSNT---TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS 241 (505)
T ss_pred HHHHHhcccchhcccccccccCCccccc---hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch
Confidence 3344556666666666665522111111 123555666666666654 23333445566666666663332222222
Q ss_pred hhcCCCCCeeecccccccccCch--hhcCCCCCCccceEEeCC
Q 048772 181 MEKLMNLRHLIIMNHVYLEYMPR--GIERLTGLRTLSEFVVGR 221 (333)
Q Consensus 181 ~~~L~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~ 221 (333)
...++.|+.|++++|+ +-.+|. -++.++.|+.|++..++.
T Consensus 242 ~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred hhhhhHHhhccccCCc-ccccccccccccccchhhhhccccCc
Confidence 3345566666666666 344442 255666666666555543
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.32 E-value=4.2e-07 Score=89.40 Aligned_cols=132 Identities=23% Similarity=0.157 Sum_probs=85.8
Q ss_pred cccCeeeccCCc-Cc-ccchhhh-ccccCcEEeccCCCCCC--cCChhhhcCCCCCeeecccccccccCchhhcCCCCCC
Q 048772 138 IHLRFLKLSWLR-IK-ELPETCC-ELINLETLEINRCTRLK--RLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLR 212 (333)
Q Consensus 138 ~~L~~L~l~~~~-i~-~lp~~i~-~L~~L~~L~l~~~~~~~--~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 212 (333)
.+|++|++++.. +. .=|..+| -|++|+.|.+++ ..+. ++-.-..+++||..||+++++ +..+ .++++|++||
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHH
Confidence 467777777754 21 2233443 467777777776 3221 112223467788888888877 5555 6788888888
Q ss_pred ccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCC--chhhhhhcCcccCCCCceEEEec
Q 048772 213 TLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLAN--VDEAKHVDLKEKKNLDRLELWFD 279 (333)
Q Consensus 213 ~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~ 279 (333)
+|.+.+..... ...+..|.+|++|+. |+++.-..... ......+.-..+++|+.|+.+++
T Consensus 199 ~L~mrnLe~e~------~~~l~~LF~L~~L~v-LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 199 VLSMRNLEFES------YQDLIDLFNLKKLRV-LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HHhccCCCCCc------hhhHHHHhcccCCCe-eeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 88887776654 566778888888887 88887554332 23334445556889999999866
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.3e-07 Score=79.87 Aligned_cols=182 Identities=16% Similarity=0.152 Sum_probs=131.8
Q ss_pred HHHHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCc-Ccc--cchhhhcc
Q 048772 84 ITASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR-IKE--LPETCCEL 160 (333)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-i~~--lp~~i~~L 160 (333)
...+..+++.........+..+++.|.+|+-|.+.++.+ +..+-..+.+-..|+.|+++++. +++ +.--+.++
T Consensus 184 rsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L----dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc 259 (419)
T KOG2120|consen 184 RSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL----DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC 259 (419)
T ss_pred hhhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc----CcHHHHHHhccccceeeccccccccchhHHHHHHHhh
Confidence 344445555555555567788899999999999999987 24555667888899999999987 553 33456789
Q ss_pred ccCcEEeccCCCCCCcC-ChhhhcC-CCCCeeecccccc-cc--cCchhhcCCCCCCccceEEeCCCCCcccCcccchhh
Q 048772 161 INLETLEINRCTRLKRL-PQGMEKL-MNLRHLIIMNHVY-LE--YMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEA 235 (333)
Q Consensus 161 ~~L~~L~l~~~~~~~~l-p~~~~~L-~~L~~L~l~~~~~-l~--~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~ 235 (333)
..|+.|++++|...... ...+.+. .+|..|++++|.. +. .+..-..++++|.+|++.++.... +..+.+
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~------~~~~~~ 333 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK------NDCFQE 333 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC------chHHHH
Confidence 99999999997654432 1122222 4788999998852 11 122224688999999999887665 567888
Q ss_pred hcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEec
Q 048772 236 LKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFD 279 (333)
Q Consensus 236 L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 279 (333)
+.+++.|++ +.++.+..+.. .....+..++.|.+|++.++
T Consensus 334 ~~kf~~L~~-lSlsRCY~i~p---~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 334 FFKFNYLQH-LSLSRCYDIIP---ETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHhcchhee-eehhhhcCCCh---HHeeeeccCcceEEEEeccc
Confidence 888999998 88888766533 34557888999999999866
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.21 E-value=1.6e-06 Score=53.53 Aligned_cols=38 Identities=34% Similarity=0.473 Sum_probs=18.6
Q ss_pred ccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcC
Q 048772 139 HLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRL 177 (333)
Q Consensus 139 ~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~l 177 (333)
+|++|++++|.|+.+|..+++|++|++|++++ +.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~-N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN-NPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS-SCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecC-CCCCCC
Confidence 45555555555555555555555555555555 334433
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.11 E-value=5e-07 Score=84.64 Aligned_cols=109 Identities=21% Similarity=0.325 Sum_probs=82.0
Q ss_pred hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772 106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM 185 (333)
Q Consensus 106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~ 185 (333)
+..+++|..|++.+|.+ ..+...+..+++|++|++++|.|+.+. .+..+..|+.|++++ |.+..++ .+..++
T Consensus 91 l~~~~~l~~l~l~~n~i-----~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~-N~i~~~~-~~~~l~ 162 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKI-----EKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG-NLISDIS-GLESLK 162 (414)
T ss_pred cccccceeeeeccccch-----hhcccchhhhhcchheecccccccccc-chhhccchhhheecc-Ccchhcc-CCccch
Confidence 45678888899999888 565544777889999999999888776 366777799999998 7777764 356688
Q ss_pred CCCeeecccccccccCchh-hcCCCCCCccceEEeCCCC
Q 048772 186 NLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTG 223 (333)
Q Consensus 186 ~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~ 223 (333)
+|+.+++++|. +..++.. ...+.+++.+.+..+....
T Consensus 163 ~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 163 SLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred hhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhc
Confidence 88999998887 5666543 4777788888776655443
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=3.5e-06 Score=51.96 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=35.5
Q ss_pred ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch
Q 048772 110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE 155 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~ 155 (333)
++|++|++++|++ ..+|..+++|++|++|++++|.++.+|.
T Consensus 1 ~~L~~L~l~~N~i-----~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQI-----TDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS------SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCC-----cccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 4799999999999 8899889999999999999999987763
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.10 E-value=3.4e-07 Score=85.82 Aligned_cols=107 Identities=22% Similarity=0.361 Sum_probs=86.6
Q ss_pred hcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCC
Q 048772 108 QFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNL 187 (333)
Q Consensus 108 ~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L 187 (333)
.+..++.+.+..+.+ ..+-..+..+++|.+|++.+|.|..+...+..+.+|++|++++ +.|..+. .+..++.|
T Consensus 70 ~l~~l~~l~l~~n~i-----~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L 142 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLI-----AKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLL 142 (414)
T ss_pred HhHhHHhhccchhhh-----hhhhcccccccceeeeeccccchhhcccchhhhhcchheeccc-ccccccc-chhhccch
Confidence 456677777887777 4434457889999999999999998887788999999999999 8888884 57788899
Q ss_pred CeeecccccccccCchhhcCCCCCCccceEEeCCCC
Q 048772 188 RHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTG 223 (333)
Q Consensus 188 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~ 223 (333)
+.|++.+|. +..++ ++..++.|+.+++.++....
T Consensus 143 ~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 143 KELNLSGNL-ISDIS-GLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred hhheeccCc-chhcc-CCccchhhhcccCCcchhhh
Confidence 999999998 66663 46678888888887766543
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.08 E-value=4.9e-06 Score=76.14 Aligned_cols=85 Identities=20% Similarity=0.345 Sum_probs=57.2
Q ss_pred hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCc-CcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772 107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR-IKELPETCCELINLETLEINRCTRLKRLPQGMEKLM 185 (333)
Q Consensus 107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~ 185 (333)
..++.++.|++++|.+ ..+|. + ..+|+.|.+++|. ++.+|..+. .+|++|++++|..+..+|.+
T Consensus 49 ~~~~~l~~L~Is~c~L-----~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s----- 113 (426)
T PRK15386 49 EEARASGRLYIKDCDI-----ESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES----- 113 (426)
T ss_pred HHhcCCCEEEeCCCCC-----cccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc-----
Confidence 4467888999998877 66662 1 2358888888755 667776553 57889999988778888864
Q ss_pred CCCeeecccc--cccccCchhhcC
Q 048772 186 NLRHLIIMNH--VYLEYMPRGIER 207 (333)
Q Consensus 186 ~L~~L~l~~~--~~l~~~p~~i~~ 207 (333)
|+.|++..+ ..+..+|.++..
T Consensus 114 -Le~L~L~~n~~~~L~~LPssLk~ 136 (426)
T PRK15386 114 -VRSLEIKGSATDSIKNVPNGLTS 136 (426)
T ss_pred -cceEEeCCCCCcccccCcchHhh
Confidence 444445433 235666665443
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.07 E-value=1.8e-06 Score=75.83 Aligned_cols=205 Identities=19% Similarity=0.098 Sum_probs=120.2
Q ss_pred hhhhhHhhhcccccceEeeccccccccCCCcchH-------hhcccccCeeeccCCcCc-c----cchhhhccccCcEEe
Q 048772 100 KELEDVFKQFTCLRALRICGENVWEIGNSKIPKA-------MKNLIHLRFLKLSWLRIK-E----LPETCCELINLETLE 167 (333)
Q Consensus 100 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~-------~~~l~~L~~L~l~~~~i~-~----lp~~i~~L~~L~~L~ 167 (333)
..+-+.+.+.+.|+..++++.-. .-....+|.. +-..++|+++|||+|-+. . +-.-+..++.|+.|.
T Consensus 48 ~~i~~~L~~~~~L~~v~~sd~ft-GR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~ 126 (382)
T KOG1909|consen 48 RAIAKVLASKKELREVNLSDMFT-GRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELY 126 (382)
T ss_pred HHHHHHHhhcccceeeehHhhhc-CCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHh
Confidence 34556666777787777765421 0000223333 344568888888888754 2 223455677888888
Q ss_pred ccCCCCCCcCC--------------hhhhcCCCCCeeecccccccccCc-----hhhcCCCCCCccceEEeCCCCCcccC
Q 048772 168 INRCTRLKRLP--------------QGMEKLMNLRHLIIMNHVYLEYMP-----RGIERLTGLRTLSEFVVGRTGGEHAS 228 (333)
Q Consensus 168 l~~~~~~~~lp--------------~~~~~L~~L~~L~l~~~~~l~~~p-----~~i~~L~~L~~L~~~~~~~~~~~~~~ 228 (333)
|.+|. +...- .-++.-++|+.++..+|. +...+ ..+...+.|+.+.+..+++...+
T Consensus 127 L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG--- 201 (382)
T KOG1909|consen 127 LNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEG--- 201 (382)
T ss_pred hhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCch---
Confidence 88743 33211 112334678888888876 44444 33666777888887777665410
Q ss_pred cccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCC
Q 048772 229 KVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWD 308 (333)
Q Consensus 229 ~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (333)
.......+...++|+. |+++..--......++...++..++|+.|++++|....... .. +.+.+... .|
T Consensus 202 ~~al~eal~~~~~Lev-Ldl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga----~a----~~~al~~~--~p 270 (382)
T KOG1909|consen 202 VTALAEALEHCPHLEV-LDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA----IA----FVDALKES--AP 270 (382)
T ss_pred hHHHHHHHHhCCccee-eecccchhhhHHHHHHHHHhcccchheeecccccccccccH----HH----HHHHHhcc--CC
Confidence 1122445677777886 77775322222334555667777888888888775332211 12 45555441 56
Q ss_pred CceeeEEeeecCh
Q 048772 309 NCHPLKYSRYGIW 321 (333)
Q Consensus 309 ~L~~L~l~~~~~~ 321 (333)
+|+.|.+.||-+.
T Consensus 271 ~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 271 SLEVLELAGNEIT 283 (382)
T ss_pred CCceeccCcchhH
Confidence 7888888887654
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.03 E-value=1.9e-06 Score=75.67 Aligned_cols=203 Identities=16% Similarity=0.071 Sum_probs=117.8
Q ss_pred hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc--------------hhhhccccCcEEe
Q 048772 102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP--------------ETCCELINLETLE 167 (333)
Q Consensus 102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp--------------~~i~~L~~L~~L~ 167 (333)
+.+.+..+++|++|+||+|-+-.-....+-.-+..+..|+.|-+.+|.+...- ..++.=+.|+++.
T Consensus 84 l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 84 LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFI 163 (382)
T ss_pred HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence 44455667789999999887621111222333566778888888888765322 1223346788888
Q ss_pred ccCCCCCCcCCh-----hhhcCCCCCeeeccccccc----ccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcC
Q 048772 168 INRCTRLKRLPQ-----GMEKLMNLRHLIIMNHVYL----EYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKG 238 (333)
Q Consensus 168 l~~~~~~~~lp~-----~~~~L~~L~~L~l~~~~~l----~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~ 238 (333)
..+ |++..-+. .+...+.|+.+.+..|..- +-+...+..+++|+.|++.++.....+... .-..++.
T Consensus 164 ~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~---LakaL~s 239 (382)
T KOG1909|consen 164 CGR-NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA---LAKALSS 239 (382)
T ss_pred eec-cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH---HHHHhcc
Confidence 888 66655443 3566678888888877521 112244678888998988887655411111 1223444
Q ss_pred cccccceeEEcccCCCCCchhhhhhcCc-ccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEee
Q 048772 239 MNHLRGLLKIRMLGDLANVDEAKHVDLK-EKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSR 317 (333)
Q Consensus 239 L~~L~~~L~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~ 317 (333)
+++|+. +.++.+---+....++...+. ..+.|+.|.+.+|. +.. +....+...+.. .|.|..|.|+|
T Consensus 240 ~~~L~E-l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-----It~---da~~~la~~~~e---k~dL~kLnLng 307 (382)
T KOG1909|consen 240 WPHLRE-LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-----ITR---DAALALAACMAE---KPDLEKLNLNG 307 (382)
T ss_pred cchhee-ecccccccccccHHHHHHHHhccCCCCceeccCcch-----hHH---HHHHHHHHHHhc---chhhHHhcCCc
Confidence 445554 444443222233344444443 25788999998883 221 111113333344 66788999988
Q ss_pred ecC
Q 048772 318 YGI 320 (333)
Q Consensus 318 ~~~ 320 (333)
|..
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 866
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.00 E-value=1.8e-05 Score=72.51 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=55.8
Q ss_pred hhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhc
Q 048772 134 MKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIE 206 (333)
Q Consensus 134 ~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~ 206 (333)
+..+.+++.|++++|.++.+|. --.+|+.|.+++|+.+..+|..+. .+|++|++++|..+..+|..+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccc
Confidence 4557899999999999999983 224699999999999999997663 5899999999976888887543
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=8.8e-07 Score=67.80 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=49.2
Q ss_pred ccccceEeeccccccccCCCcchHhhc-ccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCC
Q 048772 110 TCLRALRICGENVWEIGNSKIPKAMKN-LIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLR 188 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~-l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~ 188 (333)
..|...++++|.+ ..+|+.+.. .+.+..|++++|.++.+|.++..++.|+.|+++. |.+...|..|..|.+|-
T Consensus 53 ~el~~i~ls~N~f-----k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 53 YELTKISLSDNGF-----KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLD 126 (177)
T ss_pred ceEEEEecccchh-----hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHH
Confidence 3444556666665 555555432 3355666666666666666566666666666665 55566666555566666
Q ss_pred eeecccccccccCc
Q 048772 189 HLIIMNHVYLEYMP 202 (333)
Q Consensus 189 ~L~l~~~~~l~~~p 202 (333)
.|+..+|. ...+|
T Consensus 127 ~Lds~~na-~~eid 139 (177)
T KOG4579|consen 127 MLDSPENA-RAEID 139 (177)
T ss_pred HhcCCCCc-cccCc
Confidence 66665554 34444
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.96 E-value=3.7e-07 Score=87.13 Aligned_cols=83 Identities=28% Similarity=0.331 Sum_probs=36.8
Q ss_pred hHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh-hhcCCCCCeeecccccccccCchhhcCCCC
Q 048772 132 KAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG-MEKLMNLRHLIIMNHVYLEYMPRGIERLTG 210 (333)
Q Consensus 132 ~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~ 210 (333)
.++.-+++|+.|+|++|.+...- .+..|.+|.+||+++ |.+..+|.- ...+ +|+.|+++||. ++.+ .++.+|++
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL-~gie~Lks 255 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLRNNA-LTTL-RGIENLKS 255 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhh-hheeeeecccH-HHhh-hhHHhhhh
Confidence 34444445555555555444333 344445555555554 444444421 1111 24455554444 3333 33444555
Q ss_pred CCccceEEe
Q 048772 211 LRTLSEFVV 219 (333)
Q Consensus 211 L~~L~~~~~ 219 (333)
|+.|++..+
T Consensus 256 L~~LDlsyN 264 (1096)
T KOG1859|consen 256 LYGLDLSYN 264 (1096)
T ss_pred hhccchhHh
Confidence 555554443
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.92 E-value=1.4e-05 Score=78.95 Aligned_cols=107 Identities=21% Similarity=0.224 Sum_probs=66.5
Q ss_pred HHHhhhhHhcCCccc-hhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccC
Q 048772 85 TASRRLQIKGIPQEK-KELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINL 163 (333)
Q Consensus 85 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L 163 (333)
...+.+.+.|..... ..+.++-..+|.|+.|.+.+-.+.. .++..-...+++|+.||+|+++++.+ ..+++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc---hhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 344555555544333 2334444667888888887766521 23333445677888888888887777 567788888
Q ss_pred cEEeccCCCCCCcCC--hhhhcCCCCCeeeccccc
Q 048772 164 ETLEINRCTRLKRLP--QGMEKLMNLRHLIIMNHV 196 (333)
Q Consensus 164 ~~L~l~~~~~~~~lp--~~~~~L~~L~~L~l~~~~ 196 (333)
++|.+++ -.+..-+ ..+.+|++|++||+|...
T Consensus 198 q~L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 198 QVLSMRN-LEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHHhccC-CCCCchhhHHHHhcccCCCeeeccccc
Confidence 8887776 3333322 246677888888887654
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.81 E-value=1.5e-06 Score=83.14 Aligned_cols=113 Identities=19% Similarity=0.290 Sum_probs=86.9
Q ss_pred hhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCC
Q 048772 100 KELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLP 178 (333)
Q Consensus 100 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp 178 (333)
..++..+.-++.|+.|+|+.|++ ... +.+..+++|+.|||+.|.+..+|. +...+. |+.|.+++ |-++.+
T Consensus 177 ~~mD~SLqll~ale~LnLshNk~-----~~v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL- 247 (1096)
T KOG1859|consen 177 VLMDESLQLLPALESLNLSHNKF-----TKV-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-NALTTL- 247 (1096)
T ss_pred HhHHHHHHHHHHhhhhccchhhh-----hhh-HHHHhcccccccccccchhccccccchhhhh-heeeeecc-cHHHhh-
Confidence 34566667778899999999998 444 478889999999999999998884 333444 99999998 767777
Q ss_pred hhhhcCCCCCeeecccccccccCch--hhcCCCCCCccceEEeCCC
Q 048772 179 QGMEKLMNLRHLIIMNHVYLEYMPR--GIERLTGLRTLSEFVVGRT 222 (333)
Q Consensus 179 ~~~~~L~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~~ 222 (333)
.++.+|.+|+.||+++|- +..... -++.|..|..|++.+++.+
T Consensus 248 ~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 468899999999999886 333321 2567778888888877654
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=3e-06 Score=73.10 Aligned_cols=183 Identities=16% Similarity=0.077 Sum_probs=104.5
Q ss_pred cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCCcCCh--hhhcCCCC
Q 048772 111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLKRLPQ--GMEKLMNL 187 (333)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~--~~~~L~~L 187 (333)
.|+.|+++...+.. ..+-.-+..+.+|+-|.+.++++. .+-..|.+=.+|+.|+++.|+.+++-.. -+.+++.|
T Consensus 186 Rlq~lDLS~s~it~---stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV---STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeH---HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 47777777766521 222233566777788888877765 4555666667788888888777765332 25677788
Q ss_pred CeeecccccccccCc-hhhcCC-CCCCccceEEeCCCCCcccCcccchhhh-cCcccccceeEEcccCCCCCchhhhhhc
Q 048772 188 RHLIIMNHVYLEYMP-RGIERL-TGLRTLSEFVVGRTGGEHASKVCKLEAL-KGMNHLRGLLKIRMLGDLANVDEAKHVD 264 (333)
Q Consensus 188 ~~L~l~~~~~l~~~p-~~i~~L-~~L~~L~~~~~~~~~~~~~~~~~~~~~L-~~L~~L~~~L~~~~~~~~~~~~~~~~~~ 264 (333)
..|+++.|......- ..+... .+|..|++.++...- ....+.-| ...++|-. |+++..-.. .......
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-----~~sh~~tL~~rcp~l~~-LDLSD~v~l---~~~~~~~ 333 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-----QKSHLSTLVRRCPNLVH-LDLSDSVML---KNDCFQE 333 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-----hhhHHHHHHHhCCceee-ecccccccc---CchHHHH
Confidence 888888776322211 111111 245556665544321 11222222 23444544 555554332 2355667
Q ss_pred CcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeec
Q 048772 265 LKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYG 319 (333)
Q Consensus 265 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~ 319 (333)
+-+++.|++|.++-|+ +.. .+ .+-.+.. .|.|.+|++.|+-
T Consensus 334 ~~kf~~L~~lSlsRCY----~i~---p~----~~~~l~s---~psl~yLdv~g~v 374 (419)
T KOG2120|consen 334 FFKFNYLQHLSLSRCY----DII---PE----TLLELNS---KPSLVYLDVFGCV 374 (419)
T ss_pred HHhcchheeeehhhhc----CCC---hH----Heeeecc---CcceEEEEecccc
Confidence 7788889999888664 211 01 2223344 7789999988873
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.71 E-value=1.1e-05 Score=61.92 Aligned_cols=98 Identities=22% Similarity=0.257 Sum_probs=54.6
Q ss_pred ccceEeeccccccccCCCcchH---hhcccccCeeeccCCcCcccchhhhcc-ccCcEEeccCCCCCCcCChhhhcCCCC
Q 048772 112 LRALRICGENVWEIGNSKIPKA---MKNLIHLRFLKLSWLRIKELPETCCEL-INLETLEINRCTRLKRLPQGMEKLMNL 187 (333)
Q Consensus 112 L~~L~l~~~~~~~~~~~~lp~~---~~~l~~L~~L~l~~~~i~~lp~~i~~L-~~L~~L~l~~~~~~~~lp~~~~~L~~L 187 (333)
+..++++.|.+ ..+++. +....+|...++++|.+..+|+.+... +.+++|++.. +.+.++|..+..++.|
T Consensus 29 ~h~ldLssc~l-----m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aL 102 (177)
T KOG4579|consen 29 LHFLDLSSCQL-----MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPAL 102 (177)
T ss_pred hhhcccccchh-----hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHh
Confidence 34455555554 333333 233445555566666666666555433 3566666665 5566666666666666
Q ss_pred CeeecccccccccCchhhcCCCCCCccce
Q 048772 188 RHLIIMNHVYLEYMPRGIERLTGLRTLSE 216 (333)
Q Consensus 188 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~ 216 (333)
+.|++++|+ +...|..+..|.+|-.|+.
T Consensus 103 r~lNl~~N~-l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 103 RSLNLRFNP-LNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred hhcccccCc-cccchHHHHHHHhHHHhcC
Confidence 666666666 5556655555555555544
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.00013 Score=63.28 Aligned_cols=90 Identities=21% Similarity=0.222 Sum_probs=54.0
Q ss_pred hHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhh-hccccCcEEeccCCCCCC--cCChh
Q 048772 104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETC-CELINLETLEINRCTRLK--RLPQG 180 (333)
Q Consensus 104 ~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i-~~L~~L~~L~l~~~~~~~--~lp~~ 180 (333)
.+-..+..++.+++.+|.+-+- +.+-..+.+|++|++|+++.|++.+-..+. ..+.+|++|-|.+ +.+. .....
T Consensus 65 ~~~~~~~~v~elDL~~N~iSdW--seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~ 141 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNLISDW--SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSS 141 (418)
T ss_pred HHHHHhhhhhhhhcccchhccH--HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC-CCCChhhhhhh
Confidence 3335567788888888876110 122333467888888888888754222222 3566788888877 5432 34444
Q ss_pred hhcCCCCCeeeccccc
Q 048772 181 MEKLMNLRHLIIMNHV 196 (333)
Q Consensus 181 ~~~L~~L~~L~l~~~~ 196 (333)
+..++.++.|+++.|+
T Consensus 142 l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNS 157 (418)
T ss_pred hhcchhhhhhhhccch
Confidence 5666777777766653
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.18 E-value=0.00035 Score=57.24 Aligned_cols=77 Identities=22% Similarity=0.299 Sum_probs=31.1
Q ss_pred CeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhc-CCCCCeeecccccccccCch--hhcCCCCCCccceE
Q 048772 141 RFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEK-LMNLRHLIIMNHVYLEYMPR--GIERLTGLRTLSEF 217 (333)
Q Consensus 141 ~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~-L~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~ 217 (333)
..+||++|.+..++. +..+..|.+|.+++ |+|..+-..+.. +++|..|.+.+|+ +..+-+ .+..++.|++|.+.
T Consensus 45 d~iDLtdNdl~~l~~-lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDN-LPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ceecccccchhhccc-CCCccccceEEecC-CcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeec
Confidence 334444444433321 23344444444444 444444333332 2334444444444 333221 13344444444444
Q ss_pred EeC
Q 048772 218 VVG 220 (333)
Q Consensus 218 ~~~ 220 (333)
+++
T Consensus 122 ~Np 124 (233)
T KOG1644|consen 122 GNP 124 (233)
T ss_pred CCc
Confidence 443
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.11 E-value=0.00026 Score=60.25 Aligned_cols=111 Identities=22% Similarity=0.273 Sum_probs=73.7
Q ss_pred hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCc--Cc-ccchhhhccccCcEEeccCCCCCCcCC
Q 048772 102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR--IK-ELPETCCELINLETLEINRCTRLKRLP 178 (333)
Q Consensus 102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~--i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp 178 (333)
+......+..|..|++.++.+ ..+ ..+..|++|+.|.++.|+ +. .++-..-++++|++|++++ |+++.+-
T Consensus 35 ~~gl~d~~~~le~ls~~n~gl-----tt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~ls 107 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGL-----TTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLS 107 (260)
T ss_pred cccccccccchhhhhhhccce-----eec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Ccccccc
Confidence 334444566677777776666 222 235568899999999994 33 5665566679999999999 6665421
Q ss_pred --hhhhcCCCCCeeecccccccccCc----hhhcCCCCCCccceEEeC
Q 048772 179 --QGMEKLMNLRHLIIMNHVYLEYMP----RGIERLTGLRTLSEFVVG 220 (333)
Q Consensus 179 --~~~~~L~~L~~L~l~~~~~l~~~p----~~i~~L~~L~~L~~~~~~ 220 (333)
..+..+.+|..|++.+|.. ..+- ..+.-|++|..|+...+.
T Consensus 108 tl~pl~~l~nL~~Ldl~n~~~-~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 108 TLRPLKELENLKSLDLFNCSV-TNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred ccchhhhhcchhhhhcccCCc-cccccHHHHHHHHhhhhccccccccC
Confidence 1256778888999988873 3332 125667888888876654
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=9.4e-05 Score=63.49 Aligned_cols=103 Identities=18% Similarity=0.241 Sum_probs=72.1
Q ss_pred hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCCh--hhhcC
Q 048772 107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQ--GMEKL 184 (333)
Q Consensus 107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~--~~~~L 184 (333)
+.+.+.+.|++-||.+ ..+ ....+|+.|++|.|+-|.|+.+. .+..++.|+.|+|+. |.|..+-+ -+.+|
T Consensus 16 sdl~~vkKLNcwg~~L-----~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknl 87 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGL-----DDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNL 87 (388)
T ss_pred hHHHHhhhhcccCCCc-----cHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcC
Confidence 3455667778888877 444 24567888888888888888775 367788888888888 66666543 35677
Q ss_pred CCCCeeecccccccccCch-----hhcCCCCCCccceE
Q 048772 185 MNLRHLIIMNHVYLEYMPR-----GIERLTGLRTLSEF 217 (333)
Q Consensus 185 ~~L~~L~l~~~~~l~~~p~-----~i~~L~~L~~L~~~ 217 (333)
++|+.|-+..|+....-+. .+.-|++|+.|+-.
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 8888888888776555543 25667777777743
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.04 E-value=0.00027 Score=60.54 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=18.3
Q ss_pred hccccCcEEeccCCCCCCcCChh----hhcCCCCCeeeccccc
Q 048772 158 CELINLETLEINRCTRLKRLPQG----MEKLMNLRHLIIMNHV 196 (333)
Q Consensus 158 ~~L~~L~~L~l~~~~~~~~lp~~----~~~L~~L~~L~l~~~~ 196 (333)
-++++|+..+||.|-.-...|.. |.+-+.|.||.+++|.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 34555666666553222233332 2333455555555554
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.97 E-value=0.002 Score=55.38 Aligned_cols=172 Identities=13% Similarity=0.029 Sum_probs=100.6
Q ss_pred hhcccccCeeeccCCcCc-----ccchhhhccccCcEEeccCCCCCC----cCChh-------hhcCCCCCeeecccccc
Q 048772 134 MKNLIHLRFLKLSWLRIK-----ELPETCCELINLETLEINRCTRLK----RLPQG-------MEKLMNLRHLIIMNHVY 197 (333)
Q Consensus 134 ~~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~----~lp~~-------~~~L~~L~~L~l~~~~~ 197 (333)
+..+..+..++||+|.|. .+...|.+-.+|+..+++. -... .+|++ +-++++|+..+++.|..
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 344566667777777654 2334455556677776664 2221 33333 45789999999999974
Q ss_pred cccCchh----hcCCCCCCccceEEeCCCCCcccCcccchh----------hhcCcccccceeEEcccCCCCCchhhhhh
Q 048772 198 LEYMPRG----IERLTGLRTLSEFVVGRTGGEHASKVCKLE----------ALKGMNHLRGLLKIRMLGDLANVDEAKHV 263 (333)
Q Consensus 198 l~~~p~~----i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~----------~L~~L~~L~~~L~~~~~~~~~~~~~~~~~ 263 (333)
-...|.. |.+-+.|.||.+.+++... ..+..++ ...+-+.|+. ......+-.+........
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp----~aG~rigkal~~la~nKKaa~kp~Le~-vicgrNRlengs~~~~a~ 179 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGP----IAGGRIGKALFHLAYNKKAADKPKLEV-VICGRNRLENGSKELSAA 179 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCc----cchhHHHHHHHHHHHHhhhccCCCceE-EEeccchhccCcHHHHHH
Confidence 4555543 6777899999999887664 1222222 1122345664 333322222222222333
Q ss_pred cCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecCh
Q 048772 264 DLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIW 321 (333)
Q Consensus 264 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~ 321 (333)
-+..-.+|+.+.+..|.+.-. .-.+-++..+.. +++|+.|+|..|.++
T Consensus 180 ~l~sh~~lk~vki~qNgIrpe-------gv~~L~~~gl~y---~~~LevLDlqDNtft 227 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPE-------GVTMLAFLGLFY---SHSLEVLDLQDNTFT 227 (388)
T ss_pred HHHhhcCceeEEeeecCcCcc-------hhHHHHHHHHHH---hCcceeeeccccchh
Confidence 344446899999998853222 111225667777 889999999887653
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.90 E-value=0.00085 Score=55.07 Aligned_cols=104 Identities=21% Similarity=0.261 Sum_probs=77.8
Q ss_pred cccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhcc-ccCcEEeccCCCCCCcCCh--hhhcCC
Q 048772 109 FTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCEL-INLETLEINRCTRLKRLPQ--GMEKLM 185 (333)
Q Consensus 109 ~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L-~~L~~L~l~~~~~~~~lp~--~~~~L~ 185 (333)
..+...+++++|.+ ..++ .+..++.|..|.+.+|+|+.+-+.++.+ ++|..|.+.+ |.+.++-+ -+..++
T Consensus 41 ~d~~d~iDLtdNdl-----~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p 113 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDL-----RKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCP 113 (233)
T ss_pred ccccceecccccch-----hhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCC
Confidence 45677889999988 5543 4777889999999999999887777654 5799999998 66766532 256788
Q ss_pred CCCeeecccccccccCch----hhcCCCCCCccceEEeC
Q 048772 186 NLRHLIIMNHVYLEYMPR----GIERLTGLRTLSEFVVG 220 (333)
Q Consensus 186 ~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~~ 220 (333)
+|+.|.+-+|+ ...-+. .+.++++|++|+...+.
T Consensus 114 ~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 114 KLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 99999998887 444332 26788888888876554
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.0018 Score=56.30 Aligned_cols=165 Identities=16% Similarity=0.189 Sum_probs=94.0
Q ss_pred hhhhhHhhhcccccceEeeccccccccCCCcchHh-hcccccCeeeccCCcCc--ccchhhhccccCcEEeccCCC----
Q 048772 100 KELEDVFKQFTCLRALRICGENVWEIGNSKIPKAM-KNLIHLRFLKLSWLRIK--ELPETCCELINLETLEINRCT---- 172 (333)
Q Consensus 100 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~-~~l~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~---- 172 (333)
..+-.++.++|.|++|+++.|++ .....+. -.+++|++|-|.++.+. ..-.....++.++.|.++.|+
T Consensus 87 seI~~ile~lP~l~~LNls~N~L-----~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~ 161 (418)
T KOG2982|consen 87 SEIGAILEQLPALTTLNLSCNSL-----SSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQL 161 (418)
T ss_pred HHHHHHHhcCccceEeeccCCcC-----CCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhh
Confidence 44566778999999999999987 2211222 34678999988887754 344455666666666666521
Q ss_pred -----CCCcCChh---h-----------------hcCCCCCeeecccccccccCc--hhhcCCCCCCccceEEeCCCCCc
Q 048772 173 -----RLKRLPQG---M-----------------EKLMNLRHLIIMNHVYLEYMP--RGIERLTGLRTLSEFVVGRTGGE 225 (333)
Q Consensus 173 -----~~~~lp~~---~-----------------~~L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~~~~ 225 (333)
.+...... + ...+|+..+-+..|+ +.... .+...++.+.-|++..+.+..
T Consensus 162 n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~ids-- 238 (418)
T KOG2982|consen 162 NLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANNIDS-- 238 (418)
T ss_pred ccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhccccccc--
Confidence 11111100 1 112344444444444 22222 234455566666666666665
Q ss_pred ccCcccchhhhcCcccccceeEEcccCCCCC--chhhhhhcCcccCCCCceEEE
Q 048772 226 HASKVCKLEALKGMNHLRGLLKIRMLGDLAN--VDEAKHVDLKEKKNLDRLELW 277 (333)
Q Consensus 226 ~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~--~~~~~~~~l~~l~~L~~L~l~ 277 (333)
...+.+|..+++|+. |.+....-... ..+...--++.++++|.|+=+
T Consensus 239 ----wasvD~Ln~f~~l~d-lRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 239 ----WASVDALNGFPQLVD-LRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ----HHHHHHHcCCchhhe-eeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 667788888877776 66654322111 123333456788888877543
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.60 E-value=0.0017 Score=58.84 Aligned_cols=141 Identities=15% Similarity=0.038 Sum_probs=80.9
Q ss_pred cccCcEEeccCCCCCCcCChh--hhcCCCCCeeecccccccccCc-hhhc-CCCCCCccceEEeCCCCCcccCcccchhh
Q 048772 160 LINLETLEINRCTRLKRLPQG--MEKLMNLRHLIIMNHVYLEYMP-RGIE-RLTGLRTLSEFVVGRTGGEHASKVCKLEA 235 (333)
Q Consensus 160 L~~L~~L~l~~~~~~~~lp~~--~~~L~~L~~L~l~~~~~l~~~p-~~i~-~L~~L~~L~~~~~~~~~~~~~~~~~~~~~ 235 (333)
+..||+|+.++|+.+...+-+ ..+..+|+.|-+++|+.++..- ..++ +...|+.+++..+.... ...+.+
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~------d~tL~s 366 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT------DGTLAS 366 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh------hhhHhh
Confidence 455677777776665543321 2245677777777776443322 1122 45567777666555433 222333
Q ss_pred h-cCcccccceeEEcccCCCCCc-hhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceee
Q 048772 236 L-KGMNHLRGLLKIRMLGDLANV-DEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPL 313 (333)
Q Consensus 236 L-~~L~~L~~~L~~~~~~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L 313 (333)
+ .+.+.|+. +.+..++..++. ...+...-..+..|..|.++ +++.+.+. .++.+.. +++|+.+
T Consensus 367 ls~~C~~lr~-lslshce~itD~gi~~l~~~~c~~~~l~~lEL~-------n~p~i~d~----~Le~l~~---c~~Leri 431 (483)
T KOG4341|consen 367 LSRNCPRLRV-LSLSHCELITDEGIRHLSSSSCSLEGLEVLELD-------NCPLITDA----TLEHLSI---CRNLERI 431 (483)
T ss_pred hccCCchhcc-CChhhhhhhhhhhhhhhhhccccccccceeeec-------CCCCchHH----HHHHHhh---Cccccee
Confidence 3 24566665 666655444332 11222333456778888887 44555555 7788888 8899999
Q ss_pred EEeeecCh
Q 048772 314 KYSRYGIW 321 (333)
Q Consensus 314 ~l~~~~~~ 321 (333)
++.+++..
T Consensus 432 ~l~~~q~v 439 (483)
T KOG4341|consen 432 ELIDCQDV 439 (483)
T ss_pred eeechhhh
Confidence 99888764
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.60 E-value=0.00094 Score=34.34 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=10.4
Q ss_pred cCeeeccCCcCcccchhhh
Q 048772 140 LRFLKLSWLRIKELPETCC 158 (333)
Q Consensus 140 L~~L~l~~~~i~~lp~~i~ 158 (333)
|++|++++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555555444
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.51 E-value=0.0011 Score=56.45 Aligned_cols=106 Identities=21% Similarity=0.232 Sum_probs=64.2
Q ss_pred hcccccCeeeccCCcCcccchhhhccccCcEEeccCCC-C-CCcCChhhhcCCCCCeeecccccccccCchh---hcCCC
Q 048772 135 KNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCT-R-LKRLPQGMEKLMNLRHLIIMNHVYLEYMPRG---IERLT 209 (333)
Q Consensus 135 ~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~-~-~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~---i~~L~ 209 (333)
-....|.+|++.+..++++. .+-.|++|++|+++.|+ . ...++.-..++++|+++++++|. ++. +.. +.++.
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhhc
Confidence 33555666666666544332 23367899999999852 2 23455555677999999999997 443 332 56777
Q ss_pred CCCccceEEeCCCCCcccCcccchhhhcCcccccc
Q 048772 210 GLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRG 244 (333)
Q Consensus 210 ~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 244 (333)
+|..|+++.|.... ..++....+.-+.+|+.|..
T Consensus 117 nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcccCCccc-cccHHHHHHHHhhhhccccc
Confidence 78888888776544 11122233444455554443
No 66
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.74 E-value=0.00054 Score=57.45 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=64.3
Q ss_pred hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCC
Q 048772 107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMN 186 (333)
Q Consensus 107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~ 186 (333)
..++...+|+++.+.. -.+...++.++.|..|+++.|.+..+|...+++..+..+++.. ++....|.+++++++
T Consensus 39 ~~~kr~tvld~~s~r~-----vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRL-----VNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPH 112 (326)
T ss_pred hccceeeeehhhhhHH-----HhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCC
Confidence 3467777888888776 4555567777778888888888888888888888888887776 667788888888888
Q ss_pred CCeeeccccc
Q 048772 187 LRHLIIMNHV 196 (333)
Q Consensus 187 L~~L~l~~~~ 196 (333)
+++++..++.
T Consensus 113 ~k~~e~k~~~ 122 (326)
T KOG0473|consen 113 PKKNEQKKTE 122 (326)
T ss_pred cchhhhccCc
Confidence 8888877765
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.0029 Score=54.57 Aligned_cols=81 Identities=22% Similarity=0.216 Sum_probs=63.3
Q ss_pred HhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc--hhhhccccCcEEeccCCCCCCcCCh---
Q 048772 105 VFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP--ETCCELINLETLEINRCTRLKRLPQ--- 179 (333)
Q Consensus 105 ~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~--- 179 (333)
++.+++.|++|.|+-|.+ +.+ ..+.+++.|+.|.|..|.|..+- .-+.+|++|++|.|..|.....-+.
T Consensus 36 ic~kMp~lEVLsLSvNkI-----ssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR 109 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKI-----SSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR 109 (388)
T ss_pred HHHhcccceeEEeecccc-----ccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence 456789999999999998 665 46889999999999999988775 3567899999999987544444332
Q ss_pred --hhhcCCCCCeee
Q 048772 180 --GMEKLMNLRHLI 191 (333)
Q Consensus 180 --~~~~L~~L~~L~ 191 (333)
.+.-|+||+.||
T Consensus 110 ~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 110 RKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHcccchhcc
Confidence 255678888886
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.64 E-value=0.0054 Score=31.44 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=8.9
Q ss_pred CcEEeccCCCCCCcCChhhh
Q 048772 163 LETLEINRCTRLKRLPQGME 182 (333)
Q Consensus 163 L~~L~l~~~~~~~~lp~~~~ 182 (333)
|++||+++| .++.+|.+|+
T Consensus 2 L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSS-EESEEGTTTT
T ss_pred ccEEECCCC-cCEeCChhhc
Confidence 455555552 4445554433
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.05 E-value=0.015 Score=27.73 Aligned_cols=16 Identities=50% Similarity=0.650 Sum_probs=5.6
Q ss_pred ccCeeeccCCcCcccc
Q 048772 139 HLRFLKLSWLRIKELP 154 (333)
Q Consensus 139 ~L~~L~l~~~~i~~lp 154 (333)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444455544444443
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.24 E-value=0.0028 Score=53.23 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=74.7
Q ss_pred HhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhcCCCCCC
Q 048772 133 AMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLR 212 (333)
Q Consensus 133 ~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 212 (333)
.+........||++.|++..+-..+..++.|..||++. +.+..+|..++.+..++++++.+|. ....|.+.++++.++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcc
Confidence 35556778899999999888888889999999999998 8899999999999999999998877 789999999999999
Q ss_pred ccceEEe
Q 048772 213 TLSEFVV 219 (333)
Q Consensus 213 ~L~~~~~ 219 (333)
.++.-.+
T Consensus 115 ~~e~k~~ 121 (326)
T KOG0473|consen 115 KNEQKKT 121 (326)
T ss_pred hhhhccC
Confidence 8886544
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.29 E-value=0.049 Score=51.73 Aligned_cols=18 Identities=17% Similarity=-0.105 Sum_probs=9.9
Q ss_pred hhcCcccCCCCceEEEec
Q 048772 262 HVDLKEKKNLDRLELWFD 279 (333)
Q Consensus 262 ~~~l~~l~~L~~L~l~~~ 279 (333)
......+++|++|+++++
T Consensus 288 ~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGC 305 (482)
T ss_pred HHHHHhcCcccEEeeecC
Confidence 333444556666666655
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.27 E-value=0.12 Score=27.47 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=9.4
Q ss_pred cccCeeeccCCcCcccch
Q 048772 138 IHLRFLKLSWLRIKELPE 155 (333)
Q Consensus 138 ~~L~~L~l~~~~i~~lp~ 155 (333)
++|++|++++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555554
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.27 E-value=0.12 Score=27.47 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=9.4
Q ss_pred cccCeeeccCCcCcccch
Q 048772 138 IHLRFLKLSWLRIKELPE 155 (333)
Q Consensus 138 ~~L~~L~l~~~~i~~lp~ 155 (333)
++|++|++++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555554
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=91.38 E-value=0.12 Score=47.38 Aligned_cols=160 Identities=17% Similarity=0.066 Sum_probs=91.6
Q ss_pred hcccccceEeeccccccccCCCcchHhhcccccCeeeccCCc-Ccccc--hhhhccccCcEEeccCCCCCCcCChh-h-h
Q 048772 108 QFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR-IKELP--ETCCELINLETLEINRCTRLKRLPQG-M-E 182 (333)
Q Consensus 108 ~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-i~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~~-~-~ 182 (333)
.+.-+-.+++..|..+ ++..+-..-..+..|++|+.+++. ++..+ .-..+..+|++|.+.+|..++..--. + .
T Consensus 266 ~~~~i~~lnl~~c~~l--TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQL--TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred cChHhhccchhhhccc--cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence 3344555666666542 222222222446778888888775 33222 22345678999999988766543211 2 2
Q ss_pred cCCCCCeeecccccccccC--chhhcCCCCCCccceEEeCCCCCcccCcccchhhhcC----cccccceeEEcccCCCCC
Q 048772 183 KLMNLRHLIIMNHVYLEYM--PRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKG----MNHLRGLLKIRMLGDLAN 256 (333)
Q Consensus 183 ~L~~L~~L~l~~~~~l~~~--p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~----L~~L~~~L~~~~~~~~~~ 256 (333)
+.+.|+.+++..|.....- -.--.+.+.||.|++.++.... ...+..+.. +..|.. +.+.+ .+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~it------D~gi~~l~~~~c~~~~l~~-lEL~n---~p~ 413 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELIT------DEGIRHLSSSSCSLEGLEV-LELDN---CPL 413 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhh------hhhhhhhhhccccccccce-eeecC---CCC
Confidence 4567888888877633222 1112367788888887665443 222222222 334443 44444 344
Q ss_pred chhhhhhcCcccCCCCceEEEec
Q 048772 257 VDEAKHVDLKEKKNLDRLELWFD 279 (333)
Q Consensus 257 ~~~~~~~~l~~l~~L~~L~l~~~ 279 (333)
..++....+..+++|+.+++-.+
T Consensus 414 i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 414 ITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred chHHHHHHHhhCcccceeeeech
Confidence 56777778888899999888654
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.78 E-value=0.32 Score=25.74 Aligned_cols=19 Identities=37% Similarity=0.704 Sum_probs=10.7
Q ss_pred ccCcEEeccCCCCCCcCChh
Q 048772 161 INLETLEINRCTRLKRLPQG 180 (333)
Q Consensus 161 ~~L~~L~l~~~~~~~~lp~~ 180 (333)
++|++|++++ +.+..+|..
T Consensus 2 ~~L~~L~L~~-N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSN-NQLSSLPPG 20 (26)
T ss_pred CCCCEEECCC-CcCCcCCHH
Confidence 4556666665 455555544
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.78 E-value=0.32 Score=25.74 Aligned_cols=19 Identities=37% Similarity=0.704 Sum_probs=10.7
Q ss_pred ccCcEEeccCCCCCCcCChh
Q 048772 161 INLETLEINRCTRLKRLPQG 180 (333)
Q Consensus 161 ~~L~~L~l~~~~~~~~lp~~ 180 (333)
++|++|++++ +.+..+|..
T Consensus 2 ~~L~~L~L~~-N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSN-NQLSSLPPG 20 (26)
T ss_pred CCCCEEECCC-CcCCcCCHH
Confidence 4556666665 455555544
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=88.56 E-value=0.3 Score=46.32 Aligned_cols=113 Identities=19% Similarity=0.142 Sum_probs=49.6
Q ss_pred hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCC-c-Ccc----cchhhhccccCcEEeccCCCCCCcCC-h
Q 048772 107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWL-R-IKE----LPETCCELINLETLEINRCTRLKRLP-Q 179 (333)
Q Consensus 107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~-~-i~~----lp~~i~~L~~L~~L~l~~~~~~~~lp-~ 179 (333)
..++.|+.|.+.++..+. ...+-......++|+.|+++++ . +.. .+.....+.+|+.|++++|..+...- .
T Consensus 185 ~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKIT--DDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred hhCchhhHhhhcccccCC--hhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 345566666666554311 0112233455666666666552 1 111 11222334556666666644333211 1
Q ss_pred hhh-cCCCCCeeecccccccccCc--hhhcCCCCCCccceEEeCC
Q 048772 180 GME-KLMNLRHLIIMNHVYLEYMP--RGIERLTGLRTLSEFVVGR 221 (333)
Q Consensus 180 ~~~-~L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~ 221 (333)
.+. .+++|++|.+.+|..++.-. .....++.|++|++..+..
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 111 24566666655554322111 1123455566666655443
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.20 E-value=0.66 Score=35.26 Aligned_cols=81 Identities=17% Similarity=0.287 Sum_probs=35.0
Q ss_pred HhhhcccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCChh-h
Q 048772 105 VFKQFTCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQG-M 181 (333)
Q Consensus 105 ~~~~~~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~-~ 181 (333)
.|.+++.|+.+.+.. .+ ..++. .+..+++|+.+.+..+ +..++ ..+.++..|+.+.+.. .+..++.. +
T Consensus 7 ~F~~~~~l~~i~~~~-~~-----~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F 77 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TI-----KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAF 77 (129)
T ss_dssp TTTT-TT--EEEETS-T-------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred HHhCCCCCCEEEECC-Ce-----eEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccc
Confidence 445555666666553 23 33332 3455556666666553 55555 3445555666666653 23333332 3
Q ss_pred hcCCCCCeeeccc
Q 048772 182 EKLMNLRHLIIMN 194 (333)
Q Consensus 182 ~~L~~L~~L~l~~ 194 (333)
..+++|+.+.+..
T Consensus 78 ~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 78 SNCTNLKNIDIPS 90 (129)
T ss_dssp TT-TTECEEEETT
T ss_pred cccccccccccCc
Confidence 4466666666644
No 79
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.92 E-value=0.78 Score=34.84 Aligned_cols=97 Identities=18% Similarity=0.330 Sum_probs=51.7
Q ss_pred hhHhhhcccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCChh
Q 048772 103 EDVFKQFTCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQG 180 (333)
Q Consensus 103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~ 180 (333)
...|..++.|+.+.+.++ + ..++. .+..++.++.+.+.. .+..++ ..+..+.+|+.+++.. + +..++..
T Consensus 28 ~~~F~~~~~l~~i~~~~~-~-----~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~ 98 (129)
T PF13306_consen 28 ENAFSNCTSLKSINFPNN-L-----TSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS-N-ITEIGSS 98 (129)
T ss_dssp TTTTTT-TT-SEEEESST-T-----SCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT-T--BEEHTT
T ss_pred hhhccccccccccccccc-c-----cccceeeeecccccccccccc-cccccccccccccccccccccCc-c-ccEEchh
Confidence 455778888999998875 5 44444 367777899999976 566666 4566789999999976 3 5666543
Q ss_pred -hhcCCCCCeeecccccccccCchh-hcCCCCC
Q 048772 181 -MEKLMNLRHLIIMNHVYLEYMPRG-IERLTGL 211 (333)
Q Consensus 181 -~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L 211 (333)
+.+. +|+.+.+..+ +..++.. +.+.++|
T Consensus 99 ~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 99 SFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp TTTT--T--EEE-TTB---SS----GGG-----
T ss_pred hhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 5565 8888887653 4555543 5555444
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=87.74 E-value=0.007 Score=57.49 Aligned_cols=175 Identities=18% Similarity=0.130 Sum_probs=90.9
Q ss_pred hhhhhHhhhcccccceEeeccccccccCCCcchHhhcc-cccCeeeccCCcCc-----ccchhhhccccCcEEeccCCCC
Q 048772 100 KELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNL-IHLRFLKLSWLRIK-----ELPETCCELINLETLEINRCTR 173 (333)
Q Consensus 100 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l-~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~ 173 (333)
..+-..+....+|..|++++|.+-+.+...+-..+... ..+++|++..|.++ .++..+....+++.++++.|-.
T Consensus 105 ~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 105 EELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 34455566777888888888877321111111122222 45667777777654 3455666677888888887332
Q ss_pred CC----cCChhhh----cCCCCCeeecccccccccC-----chhhcCCCC-CCccceEEeCCCCCcccCcccchhhhcCc
Q 048772 174 LK----RLPQGME----KLMNLRHLIIMNHVYLEYM-----PRGIERLTG-LRTLSEFVVGRTGGEHASKVCKLEALKGM 239 (333)
Q Consensus 174 ~~----~lp~~~~----~L~~L~~L~l~~~~~l~~~-----p~~i~~L~~-L~~L~~~~~~~~~~~~~~~~~~~~~L~~L 239 (333)
.. .++..+. ...++++|++.+|. ++.. -..+...+. +..|++..+..... ........+..+
T Consensus 185 ~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~---g~~~L~~~l~~~ 260 (478)
T KOG4308|consen 185 IELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASNKLGDV---GVEKLLPCLSVL 260 (478)
T ss_pred chhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhcCcchH---HHHHHHHHhccc
Confidence 11 1223333 36677778777776 2211 112344444 45566655554430 001112223333
Q ss_pred -ccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEec
Q 048772 240 -NHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFD 279 (333)
Q Consensus 240 -~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 279 (333)
..++. +++....-.......+...+..+++++.|.+..|
T Consensus 261 ~~~l~~-l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 261 SETLRV-LDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred chhhhh-hhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence 34444 5555444334444556666666777777777755
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.84 E-value=0.2 Score=41.48 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=45.1
Q ss_pred ccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCC-hhhh-cCCCCCeeecccccccccCc-hhhcCCCCCCcc
Q 048772 139 HLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLP-QGME-KLMNLRHLIIMNHVYLEYMP-RGIERLTGLRTL 214 (333)
Q Consensus 139 ~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp-~~~~-~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L 214 (333)
.++..|-+++.|... -+.+.+++.++.|.+.+|..+...- +.++ -.++|+.|++++|..+++-- ..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 456677777766533 2556677777777777766554321 1122 23567777777776555432 225555555555
Q ss_pred ceEE
Q 048772 215 SEFV 218 (333)
Q Consensus 215 ~~~~ 218 (333)
.+++
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5543
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.48 E-value=0.22 Score=41.24 Aligned_cols=88 Identities=18% Similarity=0.218 Sum_probs=52.2
Q ss_pred ccCcEEeccCCCCCCcC-ChhhhcCCCCCeeecccccccccCc-hhhc-CCCCCCccceEEeCCCCCcccCcccchhhhc
Q 048772 161 INLETLEINRCTRLKRL-PQGMEKLMNLRHLIIMNHVYLEYMP-RGIE-RLTGLRTLSEFVVGRTGGEHASKVCKLEALK 237 (333)
Q Consensus 161 ~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~l~~~~~l~~~p-~~i~-~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~ 237 (333)
..++.+|.++ +.|... -+.+.+++.++.|.+.+|..+..-- ..++ -.++|+.|++.+|...+ ...+.-|.
T Consensus 101 ~~IeaVDAsd-s~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT------~~GL~~L~ 173 (221)
T KOG3864|consen 101 VKIEAVDASD-SSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT------DGGLACLL 173 (221)
T ss_pred ceEEEEecCC-chHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec------hhHHHHHH
Confidence 3467778777 333321 1235566677777777776433221 1122 24577888887776555 56677777
Q ss_pred CcccccceeEEcccCCCCC
Q 048772 238 GMNHLRGLLKIRMLGDLAN 256 (333)
Q Consensus 238 ~L~~L~~~L~~~~~~~~~~ 256 (333)
.+++|+. |.+..+..|.+
T Consensus 174 ~lknLr~-L~l~~l~~v~~ 191 (221)
T KOG3864|consen 174 KLKNLRR-LHLYDLPYVAN 191 (221)
T ss_pred HhhhhHH-HHhcCchhhhc
Confidence 7777776 77776655443
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.51 E-value=0.92 Score=24.17 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=10.4
Q ss_pred ccCeeeccCCcCcccch
Q 048772 139 HLRFLKLSWLRIKELPE 155 (333)
Q Consensus 139 ~L~~L~l~~~~i~~lp~ 155 (333)
+|++|+.++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666664
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=79.78 E-value=0.051 Score=51.72 Aligned_cols=195 Identities=22% Similarity=0.147 Sum_probs=101.7
Q ss_pred ccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcc-----cchhhhcc-ccCcEEeccCCCCC----CcCChhh
Q 048772 112 LRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKE-----LPETCCEL-INLETLEINRCTRL----KRLPQGM 181 (333)
Q Consensus 112 L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~L-~~L~~L~l~~~~~~----~~lp~~~ 181 (333)
+..|.+.+|.+.+.+...+-..+..+++|..|++++|.+.. +-..+... ..|++|++..|.-- ..+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66777777776332222333445667788888888887651 11112222 34666777664422 2344556
Q ss_pred hcCCCCCeeeccccccc----ccCchhhc----CCCCCCccceEEeCCCCCcccCcccchhhhcCccc-ccceeEEcccC
Q 048772 182 EKLMNLRHLIIMNHVYL----EYMPRGIE----RLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNH-LRGLLKIRMLG 252 (333)
Q Consensus 182 ~~L~~L~~L~l~~~~~l----~~~p~~i~----~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~-L~~~L~~~~~~ 252 (333)
.....|+.++++.|... ..++..+. ...++++|.+..+..+... ....-..+...+. +.. +++....
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~---c~~l~~~l~~~~~~~~e-l~l~~n~ 244 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSS---CALLDEVLASGESLLRE-LDLASNK 244 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHH---HHHHHHHHhccchhhHH-HHHHhcC
Confidence 66777888888877621 11223333 4667888888777655300 0111122333333 222 3333211
Q ss_pred CCCCchhhhhhcCccc-CCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecCh
Q 048772 253 DLANVDEAKHVDLKEK-KNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIW 321 (333)
Q Consensus 253 ~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~ 321 (333)
.-..........+..+ ..+++++++.|++..... .. ..+.+.. ++.++.|.+.++...
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~----~~----L~~~l~~---~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGV----RD----LAEVLVS---CRQLEELSLSNNPLT 303 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccch----HH----HHHHHhh---hHHHHHhhcccCccc
Confidence 1111233444555555 677888888775332222 11 4445555 667888888776653
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.44 E-value=1.3 Score=22.83 Aligned_cols=22 Identities=18% Similarity=-0.076 Sum_probs=11.7
Q ss_pred CCceeeEEeeecChhhhhhhHh
Q 048772 308 DNCHPLKYSRYGIWIVWKEWVM 329 (333)
Q Consensus 308 ~~L~~L~l~~~~~~~~~p~w~~ 329 (333)
++|++|+|++|.+....+.+++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4677777777766543444443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.57 E-value=3.6 Score=21.92 Aligned_cols=13 Identities=46% Similarity=0.427 Sum_probs=5.9
Q ss_pred ccCeeeccCCcCc
Q 048772 139 HLRFLKLSWLRIK 151 (333)
Q Consensus 139 ~L~~L~l~~~~i~ 151 (333)
+|+.|+++.|.|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 3444444444443
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=68.60 E-value=3.6 Score=21.62 Aligned_cols=13 Identities=38% Similarity=0.887 Sum_probs=6.1
Q ss_pred cCcEEeccCCCCC
Q 048772 162 NLETLEINRCTRL 174 (333)
Q Consensus 162 ~L~~L~l~~~~~~ 174 (333)
+|+.|++++|..+
T Consensus 3 ~L~~L~l~~C~~i 15 (26)
T smart00367 3 NLRELDLSGCTNI 15 (26)
T ss_pred CCCEeCCCCCCCc
Confidence 4445555544433
No 88
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=65.55 E-value=40 Score=26.58 Aligned_cols=55 Identities=13% Similarity=0.307 Sum_probs=40.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 048772 1 MVDAVVSVVLDQLISSAFEEAVERVRRVTAVKAEVDKLTSNLLAIKAVLSDAEQK 55 (333)
Q Consensus 1 mae~fi~~~~e~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~d~~~~ 55 (333)
+||-+.++++..+++.....+++........+...+++..++..+..++.+-+..
T Consensus 2 ~~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~ 56 (147)
T PF05659_consen 2 IAELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKL 56 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 4677777777777776666777777777777777888888887777777665443
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.59 E-value=7.9 Score=20.81 Aligned_cols=14 Identities=36% Similarity=0.252 Sum_probs=8.3
Q ss_pred cccCeeeccCCcCc
Q 048772 138 IHLRFLKLSWLRIK 151 (333)
Q Consensus 138 ~~L~~L~l~~~~i~ 151 (333)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666553
Done!