Query 048772
Match_columns 333
No_of_seqs 260 out of 3047
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 22:53:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 4.1E-23 1.4E-27 186.0 9.6 197 101-331 95-300 (328)
2 4fcg_A Uncharacterized protein 99.8 9.2E-21 3.1E-25 170.6 11.3 188 109-331 80-276 (328)
3 1ogq_A PGIP-2, polygalacturona 99.8 5.7E-20 1.9E-24 164.4 9.1 196 101-330 67-266 (313)
4 1ogq_A PGIP-2, polygalacturona 99.8 5.2E-20 1.8E-24 164.7 5.1 203 91-327 82-287 (313)
5 3rgz_A Protein brassinosteroid 99.8 2E-18 6.7E-23 172.4 12.3 115 102-220 434-549 (768)
6 3rgz_A Protein brassinosteroid 99.7 2.2E-18 7.6E-23 172.0 10.5 105 100-208 456-561 (768)
7 1ozn_A Reticulon 4 receptor; N 99.7 5.6E-18 1.9E-22 149.2 10.8 201 86-321 33-238 (285)
8 3rfs_A Internalin B, repeat mo 99.7 2.7E-18 9.1E-23 150.4 8.6 185 106-332 59-246 (272)
9 2z80_A TOLL-like receptor 2, v 99.7 6.1E-18 2.1E-22 153.6 10.6 219 86-327 53-295 (353)
10 2z66_A Variable lymphocyte rec 99.7 1.1E-18 3.8E-23 155.2 4.3 198 104-330 46-275 (306)
11 4eco_A Uncharacterized protein 99.7 5E-19 1.7E-23 173.0 1.7 171 130-329 239-423 (636)
12 3oja_B Anopheles plasmodium-re 99.7 1.4E-17 4.7E-22 161.8 10.8 115 101-222 66-184 (597)
13 1ozn_A Reticulon 4 receptor; N 99.7 1.6E-17 5.4E-22 146.3 10.0 189 109-330 31-223 (285)
14 3o6n_A APL1; leucine-rich repe 99.7 2.4E-17 8.3E-22 151.6 11.4 114 102-222 61-178 (390)
15 4eco_A Uncharacterized protein 99.7 4.4E-18 1.5E-22 166.3 5.5 192 102-329 239-453 (636)
16 3zyi_A Leucine-rich repeat-con 99.7 9.8E-18 3.3E-22 157.4 7.2 130 86-222 76-209 (452)
17 4ecn_A Leucine-rich repeat pro 99.7 4.2E-18 1.4E-22 170.7 4.1 91 130-220 440-559 (876)
18 3zyj_A Leucine-rich repeat-con 99.7 1.2E-17 4.2E-22 156.1 6.8 113 103-221 81-197 (440)
19 2z80_A TOLL-like receptor 2, v 99.7 6.6E-17 2.3E-21 146.8 11.0 179 110-322 52-236 (353)
20 1xku_A Decorin; proteoglycan, 99.7 3.6E-17 1.2E-21 147.1 9.2 110 103-221 69-183 (330)
21 2o6q_A Variable lymphocyte rec 99.7 1.2E-16 4.1E-21 139.7 12.2 177 110-320 37-217 (270)
22 1h6u_A Internalin H; cell adhe 99.7 5.8E-17 2E-21 144.5 10.1 177 105-326 58-234 (308)
23 2z66_A Variable lymphocyte rec 99.7 1.2E-17 4.1E-22 148.5 5.5 160 103-281 94-260 (306)
24 3zyj_A Leucine-rich repeat-con 99.7 4.6E-17 1.6E-21 152.3 9.3 185 102-320 104-291 (440)
25 2ft3_A Biglycan; proteoglycan, 99.7 6.2E-17 2.1E-21 145.7 9.7 108 103-220 71-183 (332)
26 3rfs_A Internalin B, repeat mo 99.7 1.6E-16 5.5E-21 139.0 12.0 184 106-325 37-222 (272)
27 2id5_A Lingo-1, leucine rich r 99.7 1.5E-16 5.1E-21 150.2 12.5 174 86-279 33-210 (477)
28 3zyi_A Leucine-rich repeat-con 99.7 5.6E-17 1.9E-21 152.2 9.4 186 101-320 114-302 (452)
29 1p9a_G Platelet glycoprotein I 99.7 4.4E-17 1.5E-21 144.0 7.8 183 110-329 31-221 (290)
30 1h6u_A Internalin H; cell adhe 99.7 2E-16 6.9E-21 140.9 12.0 175 107-326 38-212 (308)
31 3vq2_A TLR4, TOLL-like recepto 99.7 1.7E-17 5.7E-22 161.2 5.0 158 108-279 348-507 (606)
32 2z62_A TOLL-like receptor 4, v 99.7 1.2E-16 4E-21 140.0 9.7 204 86-321 29-237 (276)
33 4ecn_A Leucine-rich repeat pro 99.7 4.7E-17 1.6E-21 163.1 7.2 160 102-282 440-632 (876)
34 1h6t_A Internalin B; cell adhe 99.7 4.1E-16 1.4E-20 137.8 12.5 172 107-322 43-214 (291)
35 1wwl_A Monocyte differentiatio 99.7 3E-17 1E-21 146.6 4.8 211 82-326 60-291 (312)
36 3vq2_A TLR4, TOLL-like recepto 99.7 3.5E-16 1.2E-20 151.9 12.0 133 83-223 30-167 (606)
37 3m19_A Variable lymphocyte rec 99.7 4.8E-16 1.6E-20 134.3 11.5 103 111-220 36-142 (251)
38 1p9a_G Platelet glycoprotein I 99.7 3E-16 1E-20 138.6 10.0 174 86-281 32-207 (290)
39 2z62_A TOLL-like receptor 4, v 99.6 1.7E-16 5.7E-21 139.1 7.9 183 110-327 28-218 (276)
40 3v47_A TOLL-like receptor 5B a 99.6 1E-16 3.5E-21 150.2 6.8 63 104-170 48-112 (455)
41 3o6n_A APL1; leucine-rich repe 99.6 3.8E-16 1.3E-20 143.6 10.2 109 108-223 43-155 (390)
42 1xku_A Decorin; proteoglycan, 99.6 4.3E-16 1.5E-20 140.0 9.7 157 102-280 92-274 (330)
43 2o6q_A Variable lymphocyte rec 99.6 5.7E-16 2E-20 135.3 10.1 179 111-326 17-198 (270)
44 2z81_A CD282 antigen, TOLL-lik 99.6 6.9E-16 2.4E-20 148.0 11.4 195 103-328 43-243 (549)
45 2ast_B S-phase kinase-associat 99.6 5.2E-17 1.8E-21 146.2 3.0 164 102-279 110-282 (336)
46 2z7x_B TOLL-like receptor 1, v 99.6 1.1E-15 3.9E-20 145.6 12.4 124 86-221 22-150 (520)
47 2id5_A Lingo-1, leucine rich r 99.6 6.6E-16 2.3E-20 145.7 9.9 154 110-281 32-188 (477)
48 2z81_A CD282 antigen, TOLL-lik 99.6 8.8E-16 3E-20 147.3 10.9 179 110-322 26-210 (549)
49 1m9s_A Internalin B; cell inva 99.6 1.3E-15 4.3E-20 147.6 11.8 172 107-322 40-211 (605)
50 3oja_B Anopheles plasmodium-re 99.6 7E-16 2.4E-20 149.7 9.8 109 108-223 49-161 (597)
51 2z7x_B TOLL-like receptor 1, v 99.6 2.7E-15 9.3E-20 143.0 13.7 105 110-223 21-129 (520)
52 4fmz_A Internalin; leucine ric 99.6 3.2E-15 1.1E-19 135.1 13.3 105 106-220 62-166 (347)
53 3t6q_A CD180 antigen; protein- 99.6 6.8E-16 2.3E-20 149.9 9.1 112 103-220 271-387 (606)
54 2ft3_A Biglycan; proteoglycan, 99.6 7.3E-16 2.5E-20 138.7 8.6 190 101-321 93-307 (332)
55 1o6v_A Internalin A; bacterial 99.6 3.1E-15 1E-19 140.9 12.5 146 106-279 64-209 (466)
56 3j0a_A TOLL-like receptor 5; m 99.6 1.4E-15 4.8E-20 153.3 10.3 192 109-329 23-225 (844)
57 1ziw_A TOLL-like receptor 3; i 99.6 1.4E-15 5E-20 149.6 10.2 132 85-222 25-158 (680)
58 3v47_A TOLL-like receptor 5B a 99.6 1.1E-15 3.8E-20 143.1 8.7 121 177-325 291-412 (455)
59 1wwl_A Monocyte differentiatio 99.6 1.9E-16 6.6E-21 141.3 3.3 191 112-329 65-273 (312)
60 3t6q_A CD180 antigen; protein- 99.6 9.7E-16 3.3E-20 148.8 8.5 113 103-220 318-436 (606)
61 2z63_A TOLL-like receptor 4, v 99.6 4.5E-16 1.5E-20 149.9 6.0 130 86-223 29-163 (570)
62 4fmz_A Internalin; leucine ric 99.6 4.8E-15 1.6E-19 133.9 12.4 177 106-322 128-325 (347)
63 2xwt_C Thyrotropin receptor; s 99.6 3.2E-16 1.1E-20 134.4 4.3 102 111-219 32-140 (239)
64 2o6s_A Variable lymphocyte rec 99.6 7.4E-16 2.5E-20 129.2 6.4 101 111-218 29-133 (208)
65 2z63_A TOLL-like receptor 4, v 99.6 6.3E-16 2.1E-20 148.9 6.6 190 107-325 344-535 (570)
66 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 2.5E-15 8.6E-20 144.7 10.7 108 103-221 69-181 (562)
67 3o53_A Protein LRIM1, AGAP0063 99.6 1.1E-15 3.8E-20 136.7 6.3 182 104-330 52-235 (317)
68 4ezg_A Putative uncharacterize 99.6 4.7E-15 1.6E-19 123.3 9.5 150 107-280 41-192 (197)
69 3oja_A Leucine-rich immune mol 99.6 1.4E-15 4.8E-20 144.0 6.7 182 104-330 52-235 (487)
70 3bz5_A Internalin-J, INLJ; leu 99.6 9.6E-15 3.3E-19 137.1 12.0 169 106-325 60-228 (457)
71 3oja_A Leucine-rich immune mol 99.6 8.9E-16 3E-20 145.3 4.9 183 106-331 76-261 (487)
72 1o6v_A Internalin A; bacterial 99.6 2.4E-14 8.1E-19 134.8 14.6 147 107-281 43-189 (466)
73 1xeu_A Internalin C; cellular 99.6 3.3E-15 1.1E-19 130.0 8.0 149 105-281 36-184 (263)
74 3j0a_A TOLL-like receptor 5; m 99.6 3.6E-15 1.2E-19 150.3 8.8 131 85-222 24-161 (844)
75 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 8.3E-15 2.9E-19 141.1 11.0 104 110-222 52-159 (562)
76 2ast_B S-phase kinase-associat 99.6 6.2E-16 2.1E-20 139.1 2.8 186 106-318 89-282 (336)
77 3o53_A Protein LRIM1, AGAP0063 99.6 1.6E-15 5.5E-20 135.6 5.4 182 106-331 76-261 (317)
78 2ca6_A RAN GTPase-activating p 99.6 3.6E-16 1.2E-20 143.6 0.5 210 102-328 52-298 (386)
79 3bz5_A Internalin-J, INLJ; leu 99.6 1.2E-14 4.2E-19 136.4 10.7 169 106-325 81-249 (457)
80 2ca6_A RAN GTPase-activating p 99.5 1.1E-15 3.7E-20 140.4 2.7 202 104-322 88-317 (386)
81 3m19_A Variable lymphocyte rec 99.5 2.3E-14 7.9E-19 123.7 10.6 175 111-321 15-192 (251)
82 1xeu_A Internalin C; cellular 99.5 3E-14 1E-18 123.9 11.4 105 106-222 59-163 (263)
83 4ezg_A Putative uncharacterize 99.5 1.6E-14 5.6E-19 120.0 9.1 156 134-322 40-195 (197)
84 2xwt_C Thyrotropin receptor; s 99.5 4.3E-15 1.5E-19 127.3 5.6 196 86-319 32-237 (239)
85 1ziw_A TOLL-like receptor 3; i 99.5 1.4E-14 4.8E-19 142.5 9.5 154 110-282 25-184 (680)
86 1h6t_A Internalin B; cell adhe 99.5 9.1E-14 3.1E-18 122.7 13.0 149 106-281 64-212 (291)
87 4glp_A Monocyte differentiatio 99.5 1.4E-14 4.9E-19 129.0 6.8 157 109-280 90-262 (310)
88 4g8a_A TOLL-like receptor 4; l 99.5 2.9E-14 1E-18 138.6 8.8 104 111-221 53-160 (635)
89 4glp_A Monocyte differentiatio 99.5 1.2E-14 4.1E-19 129.4 5.5 189 102-322 107-308 (310)
90 2v9t_B SLIT homolog 2 protein 99.5 4.2E-14 1.4E-18 119.7 8.1 105 110-221 32-140 (220)
91 3cvr_A Invasion plasmid antige 99.5 9.5E-14 3.2E-18 133.2 10.0 168 109-331 79-253 (571)
92 3g06_A SSPH2 (leucine-rich rep 99.5 8.7E-14 3E-18 134.9 9.3 78 109-202 80-157 (622)
93 2ell_A Acidic leucine-rich nuc 99.5 8.1E-14 2.8E-18 112.6 7.4 107 110-222 24-133 (168)
94 4b8c_D Glucose-repressible alc 99.5 9E-14 3.1E-18 137.6 8.6 116 101-223 215-330 (727)
95 3cvr_A Invasion plasmid antige 99.5 1.1E-13 3.9E-18 132.7 9.0 167 110-331 59-229 (571)
96 1m9s_A Internalin B; cell inva 99.5 2.5E-13 8.7E-18 131.4 11.3 150 105-281 60-209 (605)
97 3e6j_A Variable lymphocyte rec 99.4 2.6E-13 8.7E-18 115.5 9.8 126 110-250 40-168 (229)
98 2ell_A Acidic leucine-rich nuc 99.4 1.3E-13 4.4E-18 111.4 7.6 114 101-222 40-160 (168)
99 2o6s_A Variable lymphocyte rec 99.4 1.1E-13 3.9E-18 115.8 7.4 177 113-332 10-189 (208)
100 2v70_A SLIT-2, SLIT homolog 2 99.4 1.9E-13 6.4E-18 115.7 8.3 147 113-280 14-164 (220)
101 2je0_A Acidic leucine-rich nuc 99.4 5.7E-14 1.9E-18 111.2 4.5 108 109-222 16-126 (149)
102 3g06_A SSPH2 (leucine-rich rep 99.4 1.5E-13 5.1E-18 133.3 7.9 188 110-331 61-283 (622)
103 2je0_A Acidic leucine-rich nuc 99.4 5.8E-14 2E-18 111.1 4.2 109 101-217 33-148 (149)
104 1ds9_A Outer arm dynein; leuci 99.4 1.4E-14 4.8E-19 120.5 -0.4 110 130-250 40-149 (198)
105 3e6j_A Variable lymphocyte rec 99.4 3.8E-13 1.3E-17 114.5 8.3 149 111-281 20-171 (229)
106 2v9t_B SLIT homolog 2 protein 99.4 5.3E-13 1.8E-17 112.9 9.0 147 113-280 14-163 (220)
107 1dce_A Protein (RAB geranylger 99.4 1.4E-13 4.8E-18 132.4 5.8 166 100-282 362-546 (567)
108 1dce_A Protein (RAB geranylger 99.4 3.9E-13 1.3E-17 129.3 8.6 159 101-276 400-567 (567)
109 1jl5_A Outer protein YOPM; leu 99.4 3.3E-13 1.1E-17 126.5 7.7 98 110-222 111-208 (454)
110 2xot_A Amphoterin-induced prot 99.4 2E-13 7E-18 124.2 5.9 151 113-281 21-175 (361)
111 4g8a_A TOLL-like receptor 4; l 99.4 1.1E-12 3.7E-17 127.5 11.2 137 79-223 46-187 (635)
112 3goz_A Leucine-rich repeat-con 99.4 3.2E-13 1.1E-17 122.9 6.6 195 110-322 80-298 (362)
113 3goz_A Leucine-rich repeat-con 99.4 5.9E-13 2E-17 121.1 7.8 195 104-320 44-265 (362)
114 1z7x_W Ribonuclease inhibitor; 99.4 9.2E-14 3.1E-18 130.2 2.5 168 102-279 162-351 (461)
115 2v70_A SLIT-2, SLIT homolog 2 99.4 1.6E-12 5.4E-17 109.9 8.9 105 111-222 33-142 (220)
116 1a9n_A U2A', U2A'; complex (nu 99.4 7.1E-13 2.4E-17 108.0 6.0 106 107-221 16-125 (176)
117 4b8c_D Glucose-repressible alc 99.3 1.7E-13 5.9E-18 135.6 2.7 113 128-251 214-326 (727)
118 1a9n_A U2A', U2A'; complex (nu 99.3 1.2E-12 4.2E-17 106.5 7.2 110 103-220 35-151 (176)
119 1jl5_A Outer protein YOPM; leu 99.3 1.2E-12 4.2E-17 122.6 7.3 97 110-221 131-227 (454)
120 1z7x_W Ribonuclease inhibitor; 99.3 1.4E-13 4.9E-18 128.9 0.6 197 101-322 47-270 (461)
121 2wfh_A SLIT homolog 2 protein 99.3 3.7E-12 1.3E-16 105.4 8.9 105 110-221 31-138 (193)
122 2xot_A Amphoterin-induced prot 99.3 1.1E-12 3.7E-17 119.4 5.9 155 110-280 39-200 (361)
123 1ds9_A Outer arm dynein; leuci 99.3 2.4E-13 8.1E-18 113.0 0.7 113 100-221 38-152 (198)
124 1w8a_A SLIT protein; signaling 99.3 5.2E-12 1.8E-16 104.4 7.4 106 111-222 30-139 (192)
125 2wfh_A SLIT homolog 2 protein 99.3 1.1E-11 3.7E-16 102.6 9.2 102 113-223 13-116 (193)
126 1w8a_A SLIT protein; signaling 99.3 7.4E-12 2.5E-16 103.4 7.1 121 113-250 11-135 (192)
127 3ogk_B Coronatine-insensitive 99.3 7.6E-12 2.6E-16 120.9 8.0 93 101-194 155-252 (592)
128 2r9u_A Variable lymphocyte rec 99.2 1.5E-11 5.1E-16 99.9 7.5 103 112-223 14-119 (174)
129 4ay9_X Follicle-stimulating ho 99.2 2.9E-12 9.9E-17 116.0 3.6 101 110-216 30-135 (350)
130 3ogk_B Coronatine-insensitive 99.2 1.1E-11 3.9E-16 119.7 6.5 106 109-218 136-252 (592)
131 3g39_A Variable lymphocyte rec 99.2 2.5E-11 8.7E-16 98.2 7.3 104 111-223 10-116 (170)
132 2o6r_A Variable lymphocyte rec 99.2 5E-11 1.7E-15 96.9 8.6 106 110-222 28-137 (177)
133 2o6r_A Variable lymphocyte rec 99.1 1.6E-10 5.6E-15 93.8 9.2 103 111-222 8-113 (177)
134 2r9u_A Variable lymphocyte rec 99.1 1.6E-10 5.6E-15 93.8 7.0 90 110-206 33-125 (174)
135 4ay9_X Follicle-stimulating ho 99.1 1.9E-10 6.4E-15 104.0 8.1 104 113-223 12-118 (350)
136 2p1m_B Transport inhibitor res 99.0 5.5E-11 1.9E-15 114.8 2.6 109 107-217 127-243 (594)
137 2p1m_B Transport inhibitor res 99.0 2.2E-10 7.6E-15 110.6 6.5 92 102-193 148-243 (594)
138 3g39_A Variable lymphocyte rec 99.0 1.3E-09 4.4E-14 88.0 8.2 82 109-196 29-113 (170)
139 2ifg_A High affinity nerve gro 98.9 1.4E-09 4.7E-14 98.1 7.5 90 128-220 22-114 (347)
140 3qfl_A MLA10; coiled-coil, (CC 98.8 5.8E-09 2E-13 78.1 5.7 74 15-88 8-83 (115)
141 3un9_A NLR family member X1; l 98.8 5.6E-10 1.9E-14 101.7 -0.2 166 109-280 71-250 (372)
142 2ifg_A High affinity nerve gro 98.7 1.1E-08 3.9E-13 92.0 6.9 90 100-196 22-114 (347)
143 3sb4_A Hypothetical leucine ri 98.7 1.9E-08 6.4E-13 90.0 7.3 64 109-174 48-136 (329)
144 3un9_A NLR family member X1; l 98.6 1.9E-09 6.5E-14 98.2 -2.0 169 137-322 71-253 (372)
145 2ra8_A Uncharacterized protein 98.6 2.8E-08 9.7E-13 89.9 3.8 171 134-321 135-320 (362)
146 2ra8_A Uncharacterized protein 98.5 8.3E-08 2.8E-12 86.8 5.5 167 105-280 134-318 (362)
147 3sb4_A Hypothetical leucine ri 98.4 3.5E-07 1.2E-11 81.7 7.1 177 103-315 86-328 (329)
148 1io0_A Tropomodulin; LRR prote 98.3 2.1E-07 7.1E-12 76.0 3.5 118 101-220 27-162 (185)
149 3rw6_A Nuclear RNA export fact 98.2 8.5E-07 2.9E-11 76.5 4.9 81 135-217 167-259 (267)
150 4fdw_A Leucine rich hypothetic 98.2 4.5E-06 1.5E-10 76.6 8.7 104 104-218 174-280 (401)
151 3rw6_A Nuclear RNA export fact 98.0 1.2E-05 4E-10 69.3 7.6 83 107-193 167-259 (267)
152 3e4g_A ATP synthase subunit S, 98.0 3.3E-06 1.1E-10 67.8 3.1 85 138-222 61-152 (176)
153 1io0_A Tropomodulin; LRR prote 97.8 9.4E-06 3.2E-10 66.1 3.9 94 102-196 57-162 (185)
154 4fdw_A Leucine rich hypothetic 97.8 0.00013 4.4E-09 66.8 10.6 74 139-216 158-233 (401)
155 3e4g_A ATP synthase subunit S, 97.7 4.1E-05 1.4E-09 61.4 5.2 36 161-197 61-97 (176)
156 3rfe_A Platelet glycoprotein I 95.8 0.013 4.6E-07 44.2 5.2 31 140-170 33-64 (130)
157 3rfe_A Platelet glycoprotein I 95.6 0.013 4.6E-07 44.2 4.5 53 141-196 11-66 (130)
158 1pgv_A TMD-1, tropomodulin TMD 95.2 0.015 5.2E-07 47.3 3.9 93 102-195 33-136 (197)
159 4gt6_A Cell surface protein; l 94.5 0.075 2.6E-06 48.0 7.2 126 133-279 260-388 (394)
160 4h09_A Hypothetical leucine ri 94.1 0.087 3E-06 47.2 6.6 102 105-216 212-317 (379)
161 1pgv_A TMD-1, tropomodulin TMD 94.1 0.058 2E-06 43.8 4.8 95 102-196 62-168 (197)
162 4fs7_A Uncharacterized protein 93.9 0.073 2.5E-06 48.1 5.7 144 104-274 247-393 (394)
163 4fs7_A Uncharacterized protein 93.6 0.064 2.2E-06 48.5 4.8 102 104-217 270-374 (394)
164 4gt6_A Cell surface protein; l 92.7 0.5 1.7E-05 42.5 9.3 128 155-318 259-388 (394)
165 4h09_A Hypothetical leucine ri 90.3 0.38 1.3E-05 42.9 5.7 104 103-216 233-340 (379)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=4.1e-23 Score=186.04 Aligned_cols=197 Identities=18% Similarity=0.220 Sum_probs=164.1
Q ss_pred hhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh
Q 048772 101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG 180 (333)
Q Consensus 101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~ 180 (333)
.++..+.++++|++|++++|.+ ..+|..++.+++|++|++++|.++.+|..++++++|++|++++|+.+..+|..
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l-----~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~ 169 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGL-----MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP 169 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCC-----CCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSC
T ss_pred hcChhhhhCCCCCEEECCCCCc-----cchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChh
Confidence 4566677799999999999998 78898899999999999999999999999999999999999998888899988
Q ss_pred hhc---------CCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEccc
Q 048772 181 MEK---------LMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRML 251 (333)
Q Consensus 181 ~~~---------L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~ 251 (333)
++. +++|++|++++|. +..+|..++++++|++|++.++.... .+..+..+++|+. |++.+.
T Consensus 170 ~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~--------l~~~l~~l~~L~~-L~Ls~n 239 (328)
T 4fcg_A 170 LASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSA--------LGPAIHHLPKLEE-LDLRGC 239 (328)
T ss_dssp SEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCC--------CCGGGGGCTTCCE-EECTTC
T ss_pred HhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCc--------CchhhccCCCCCE-EECcCC
Confidence 765 9999999999998 77999999999999999998877654 2234667777886 888763
Q ss_pred CCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhhh
Q 048772 252 GDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNF 331 (333)
Q Consensus 252 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~l 331 (333)
. ..+..+..++.+++|+.|+++.|...+. ++..+.. +++|+.|++++|...+.+|.|++.+
T Consensus 240 ~----~~~~~p~~~~~l~~L~~L~L~~n~~~~~------------~p~~~~~---l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 240 T----ALRNYPPIFGGRAPLKRLILKDCSNLLT------------LPLDIHR---LTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp T----TCCBCCCCTTCCCCCCEEECTTCTTCCB------------CCTTGGG---CTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred c----chhhhHHHhcCCCCCCEEECCCCCchhh------------cchhhhc---CCCCCEEeCCCCCchhhccHHHhhc
Confidence 3 3345677889999999999998753322 5556667 8899999999987766599999875
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=9.2e-21 Score=170.64 Aligned_cols=188 Identities=21% Similarity=0.209 Sum_probs=156.1
Q ss_pred cccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCC
Q 048772 109 FTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLR 188 (333)
Q Consensus 109 ~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~ 188 (333)
...++.|++++|.+ ..+|..++++++|++|++++|.++.+|..++++++|++|++++ +.+..+|..++++++|+
T Consensus 80 ~~~l~~L~L~~n~l-----~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~-n~l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVPL-----PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR-NPLRALPASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSCC-----SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEES-CCCCCCCGGGGGCTTCC
T ss_pred ccceeEEEccCCCc-----hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCC-CccccCcHHHhcCcCCC
Confidence 57899999999999 7899999999999999999999999999999999999999999 67889999999999999
Q ss_pred eeecccccccccCchhhcC---------CCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchh
Q 048772 189 HLIIMNHVYLEYMPRGIER---------LTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDE 259 (333)
Q Consensus 189 ~L~l~~~~~l~~~p~~i~~---------L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~ 259 (333)
+|++++|..++.+|..++. +++|++|++.++.... .+..+..+++|+. |++.+..- .
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--------lp~~l~~l~~L~~-L~L~~N~l-----~ 219 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--------LPASIANLQNLKS-LKIRNSPL-----S 219 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC--------CCGGGGGCTTCCE-EEEESSCC-----C
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc--------chHhhcCCCCCCE-EEccCCCC-----C
Confidence 9999999888999987765 9999999999987653 2234666677776 77776322 2
Q ss_pred hhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhhh
Q 048772 260 AKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNF 331 (333)
Q Consensus 260 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~l 331 (333)
.++..+..+++|+.|++++|...+. ++..+.. +++|+.|++++|...+.+|.+++.+
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~------------~p~~~~~---l~~L~~L~L~~n~~~~~~p~~~~~l 276 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRN------------YPPIFGG---RAPLKRLILKDCSNLLTLPLDIHRL 276 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCB------------CCCCTTC---CCCCCEEECTTCTTCCBCCTTGGGC
T ss_pred cCchhhccCCCCCEEECcCCcchhh------------hHHHhcC---CCCCCEEECCCCCchhhcchhhhcC
Confidence 3556788999999999998753322 4556666 8899999999987665589888754
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=5.7e-20 Score=164.38 Aligned_cols=196 Identities=17% Similarity=0.232 Sum_probs=136.8
Q ss_pred hhhhHhhhcccccceEeec-cccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCC-cC
Q 048772 101 ELEDVFKQFTCLRALRICG-ENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLK-RL 177 (333)
Q Consensus 101 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~-~l 177 (333)
.++..+.+++.|++|++++ |.+. ..+|..++++++|++|++++|.++ .+|..++++++|++|++++ +.+. .+
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~ 141 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLV----GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY-NALSGTL 141 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEE----SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS-SEEESCC
T ss_pred ccChhHhCCCCCCeeeCCCCCccc----ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC-CccCCcC
Confidence 4567788899999999995 7662 567888999999999999999987 7888899999999999998 5555 78
Q ss_pred ChhhhcCCCCCeeecccccccccCchhhcCCC-CCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCC
Q 048772 178 PQGMEKLMNLRHLIIMNHVYLEYMPRGIERLT-GLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLAN 256 (333)
Q Consensus 178 p~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~-~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~ 256 (333)
|..++++++|++|++++|.....+|..++.++ +|++|++.++.... ..+..+..++ |+. |++.+ +.
T Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~-------~~~~~~~~l~-L~~-L~Ls~----N~ 208 (313)
T 1ogq_A 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-------KIPPTFANLN-LAF-VDLSR----NM 208 (313)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-------ECCGGGGGCC-CSE-EECCS----SE
T ss_pred ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec-------cCChHHhCCc-ccE-EECcC----Cc
Confidence 88899999999999999884448888899888 89999887665432 2223333443 554 55554 22
Q ss_pred chhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhh
Q 048772 257 VDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMN 330 (333)
Q Consensus 257 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~ 330 (333)
..+..+..+..+++|+.|++++|...+ .+..+.. +++|++|++++|.+.+.+|.++..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~---l~~L~~L~Ls~N~l~~~~p~~l~~ 266 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAF-------------DLGKVGL---SKNLNGLDLRNNRIYGTLPQGLTQ 266 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECC-------------BGGGCCC---CTTCCEEECCSSCCEECCCGGGGG
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceee-------------ecCcccc---cCCCCEEECcCCcccCcCChHHhc
Confidence 233445566667777777776664221 1122333 556666666666655335655544
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=5.2e-20 Score=164.65 Aligned_cols=203 Identities=17% Similarity=0.159 Sum_probs=157.4
Q ss_pred hHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEecc
Q 048772 91 QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEIN 169 (333)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~ 169 (333)
.+.+.+.....++..+.++++|++|++++|.+. ..+|..+..+++|++|++++|.++ .+|..++++++|++|+++
T Consensus 82 ~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS----GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp EEEEETTEESCCCGGGGGCTTCSEEEEEEECCE----EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred eCCCCCcccccCChhHhcCCCCCEEECcCCeeC----CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 333323444466778899999999999999982 378889999999999999999988 789999999999999999
Q ss_pred CCCCCC-cCChhhhcCC-CCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeE
Q 048772 170 RCTRLK-RLPQGMEKLM-NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLK 247 (333)
Q Consensus 170 ~~~~~~-~lp~~~~~L~-~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~ 247 (333)
+ +.+. .+|..++.++ +|++|++++|.....+|..++.++ |++|++.++.... .....+..+++|+. |+
T Consensus 158 ~-N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~-L~ 227 (313)
T 1ogq_A 158 G-NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-------DASVLFGSDKNTQK-IH 227 (313)
T ss_dssp S-SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE-------CCGGGCCTTSCCSE-EE
T ss_pred C-CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC-------cCCHHHhcCCCCCE-EE
Confidence 9 5566 8999999998 999999999985558888899987 9999987765442 33445666777776 77
Q ss_pred EcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhh
Q 048772 248 IRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEW 327 (333)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w 327 (333)
+.+.. ..+ .+..+..+++|++|+++.|...+. ++..+.. +++|+.|++++|.+.+.+|.+
T Consensus 228 L~~N~----l~~-~~~~~~~l~~L~~L~Ls~N~l~~~------------~p~~l~~---l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 228 LAKNS----LAF-DLGKVGLSKNLNGLDLRNNRIYGT------------LPQGLTQ---LKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp CCSSE----ECC-BGGGCCCCTTCCEEECCSSCCEEC------------CCGGGGG---CTTCCEEECCSSEEEEECCCS
T ss_pred CCCCc----eee-ecCcccccCCCCEEECcCCcccCc------------CChHHhc---CcCCCEEECcCCcccccCCCC
Confidence 76532 112 233477789999999998853322 4556667 888999999998887547764
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.76 E-value=2e-18 Score=172.41 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=73.7
Q ss_pred hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCCcCChh
Q 048772 102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLKRLPQG 180 (333)
Q Consensus 102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~ 180 (333)
++..+..+++|++|++++|.+. ..+|..+..+++|++|++++|.++ .+|..++++++|++|++++|.....+|.+
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLE----GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCC----SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred ccHHHhcCCCCCEEECCCCccc----CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence 3444555566666666666551 355666666666777777766665 56666777777777777764333366777
Q ss_pred hhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeC
Q 048772 181 MEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVG 220 (333)
Q Consensus 181 ~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~ 220 (333)
++.+++|++|++++|...+.+|..++.+++|+.|++.++.
T Consensus 510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 7777777777777776445667777777777777765543
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.75 E-value=2.2e-18 Score=172.01 Aligned_cols=105 Identities=19% Similarity=0.276 Sum_probs=90.8
Q ss_pred hhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCCcCC
Q 048772 100 KELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLKRLP 178 (333)
Q Consensus 100 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp 178 (333)
..++..+..+++|++|++++|.+. ..+|..+..+++|++|++++|.++ .+|..++++++|++|++++|.....+|
T Consensus 456 ~~~p~~~~~l~~L~~L~L~~N~l~----~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 456 GEIPQELMYVKTLETLILDFNDLT----GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCC----SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcCCHHHcCCCCceEEEecCCccc----CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence 356777889999999999999982 477889999999999999999988 889999999999999999955445899
Q ss_pred hhhhcCCCCCeeecccccccccCchhhcCC
Q 048772 179 QGMEKLMNLRHLIIMNHVYLEYMPRGIERL 208 (333)
Q Consensus 179 ~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L 208 (333)
..++++++|+.|++++|.....+|..+..+
T Consensus 532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred HHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 999999999999999998666777665543
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=5.6e-18 Score=149.20 Aligned_cols=201 Identities=21% Similarity=0.248 Sum_probs=148.5
Q ss_pred HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCc-Cccc-chhhhcccc
Q 048772 86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLR-IKEL-PETCCELIN 162 (333)
Q Consensus 86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~-i~~l-p~~i~~L~~ 162 (333)
.++.+.+.+... ....+..+..+++|++|++++|.+ ..+ |..+..+++|++|++++|. ++.+ |..+..+++
T Consensus 33 ~l~~L~l~~n~i-~~~~~~~~~~~~~L~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 33 ASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVL-----ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp TCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCC-----CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CceEEEeeCCcC-CccCHHHcccCCCCCEEECCCCcc-----ceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 344444444322 223345678899999999999988 444 6678899999999999997 8877 578899999
Q ss_pred CcEEeccCCCCCCcC-ChhhhcCCCCCeeecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcc
Q 048772 163 LETLEINRCTRLKRL-PQGMEKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMN 240 (333)
Q Consensus 163 L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~ 240 (333)
|++|++++ +.+..+ |..+.++++|++|++++|. +..+|.. ++.+++|++|++.++.... .....+..++
T Consensus 107 L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~ 177 (285)
T 1ozn_A 107 LHTLHLDR-CGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISS-------VPERAFRGLH 177 (285)
T ss_dssp CCEEECTT-SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCE-------ECTTTTTTCT
T ss_pred CCEEECCC-CcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccc-------cCHHHhcCcc
Confidence 99999999 556666 5668899999999999998 6777654 8899999999998776543 2223355667
Q ss_pred cccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecC
Q 048772 241 HLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGI 320 (333)
Q Consensus 241 ~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~ 320 (333)
.|+. |++.+. ...+..+..+..+++|+.|++++|...+. ..+.+.. +++|+.|++++|.+
T Consensus 178 ~L~~-L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~---l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 178 SLDR-LLLHQN----RVAHVHPHAFRDLGRLMTLYLFANNLSAL------------PTEALAP---LRALQYLRLNDNPW 237 (285)
T ss_dssp TCCE-EECCSS----CCCEECTTTTTTCTTCCEEECCSSCCSCC------------CHHHHTT---CTTCCEEECCSSCE
T ss_pred ccCE-EECCCC----cccccCHhHccCcccccEeeCCCCcCCcC------------CHHHccc---CcccCEEeccCCCc
Confidence 7776 777663 23344567788899999999998854322 2234566 78899999998865
Q ss_pred h
Q 048772 321 W 321 (333)
Q Consensus 321 ~ 321 (333)
.
T Consensus 238 ~ 238 (285)
T 1ozn_A 238 V 238 (285)
T ss_dssp E
T ss_pred c
Confidence 4
No 8
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=2.7e-18 Score=150.38 Aligned_cols=185 Identities=21% Similarity=0.243 Sum_probs=124.2
Q ss_pred hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCChh-hhc
Q 048772 106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQG-MEK 183 (333)
Q Consensus 106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-~~~ 183 (333)
+..+++|++|++++|.+ ..++ .+..+++|++|++++|.++.+|. .++++++|++|++++ +.+..+|.. +++
T Consensus 59 l~~l~~L~~L~l~~n~l-----~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~ 131 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKL-----HDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDK 131 (272)
T ss_dssp GGGCTTCCEEECTTSCC-----CCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTT
T ss_pred cccCCCCcEEECCCCCC-----CCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC-CcCCccCHHHhcc
Confidence 56678888888888877 4543 67778888888888888877764 357788888888887 556666554 677
Q ss_pred CCCCCeeecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhh
Q 048772 184 LMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKH 262 (333)
Q Consensus 184 L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~ 262 (333)
+++|++|++++|. +..+|.. ++.+++|++|++.++.... .....+..+++|+. |++.+.. ..+..+
T Consensus 132 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~-L~L~~N~----l~~~~~ 198 (272)
T 3rfs_A 132 LTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQS-------LPEGVFDKLTQLKD-LRLYQNQ----LKSVPD 198 (272)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCE-EECCSSC----CSCCCT
T ss_pred CCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCc-------cCHHHhcCCccCCE-EECCCCc----CCccCH
Confidence 8888888888886 5666654 5778888888877765543 22223455566665 6665521 222333
Q ss_pred hcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhhhh
Q 048772 263 VDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNFW 332 (333)
Q Consensus 263 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~l~ 332 (333)
..+..+++|+.|+++.|.. ... +++|+.|++.++...+.+|.|++.++
T Consensus 199 ~~~~~l~~L~~L~l~~N~~-------------------~~~---~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPW-------------------DCT---CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTTTCTTCCEEECCSSCB-------------------CCC---TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred HHHhCCcCCCEEEccCCCc-------------------ccc---CcHHHHHHHHHHhCCCcccCcccccC
Confidence 4567778888888876631 122 55677777777766655788877654
No 9
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=6.1e-18 Score=153.62 Aligned_cols=219 Identities=18% Similarity=0.163 Sum_probs=140.2
Q ss_pred HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccchh-hhccccC
Q 048772 86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPET-CCELINL 163 (333)
Q Consensus 86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L 163 (333)
.++.+.+.+... ....+..+.++++|++|++++|.+ ..+ |..+..+++|++|++++|.++.+|.. ++++++|
T Consensus 53 ~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 53 AVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGI-----NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp TCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred cCcEEECCCCcC-cccCHHHhccCCCCCEEECCCCcc-----CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence 444445544332 223344678889999999999887 444 45688889999999999998888865 7889999
Q ss_pred cEEeccCCCCCCcCCh--hhhcCCCCCeeecccccccccCc-hhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcc
Q 048772 164 ETLEINRCTRLKRLPQ--GMEKLMNLRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMN 240 (333)
Q Consensus 164 ~~L~l~~~~~~~~lp~--~~~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~ 240 (333)
++|++++ +.+..+|. .+.++++|++|++++|..+..+| ..++++++|++|++.++.... .....+..++
T Consensus 127 ~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~l~~l~ 198 (353)
T 2z80_A 127 TFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-------YEPKSLKSIQ 198 (353)
T ss_dssp SEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-------ECTTTTTTCS
T ss_pred CEEECCC-CCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc-------cCHHHHhccc
Confidence 9999998 67888886 67889999999998885466664 458888899999888776543 2234455566
Q ss_pred cccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCc-------------------cchHHHHHHhhhc
Q 048772 241 HLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENE-------------------ENDEAITKIAKSV 301 (333)
Q Consensus 241 ~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~l 301 (333)
+|+. |++.+..- .......+..+++|+.|++++|...+..... .....+..+++.+
T Consensus 199 ~L~~-L~l~~n~l----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 199 NVSH-LILHMKQH----ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp EEEE-EEEECSCS----TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred cCCe-ecCCCCcc----ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH
Confidence 6665 66655321 1111122334566777777766544322110 0112222344445
Q ss_pred cCCCCCCCceeeEEeeecChhhhhhh
Q 048772 302 RVCLLWDNCHPLKYSRYGIWIVWKEW 327 (333)
Q Consensus 302 ~~~~~~~~L~~L~l~~~~~~~~~p~w 327 (333)
.. +++|+.|++++|.+.. +|.+
T Consensus 274 ~~---l~~L~~L~Ls~N~l~~-i~~~ 295 (353)
T 2z80_A 274 NQ---ISGLLELEFSRNQLKS-VPDG 295 (353)
T ss_dssp HT---CTTCCEEECCSSCCCC-CCTT
T ss_pred hc---ccCCCEEECCCCCCCc-cCHH
Confidence 55 5566666666666655 5554
No 10
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=1.1e-18 Score=155.24 Aligned_cols=198 Identities=16% Similarity=0.170 Sum_probs=94.8
Q ss_pred hHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCCh--hh
Q 048772 104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQ--GM 181 (333)
Q Consensus 104 ~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~--~~ 181 (333)
.+|.++++|++|++++|.+... ...|..+..+++|++|++++|.+..+|..+..+++|++|++++ +.+..+|. .+
T Consensus 46 ~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~ 122 (306)
T 2z66_A 46 GVFDKLTQLTKLSLSSNGLSFK--GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVF 122 (306)
T ss_dssp TTTTTCTTCSEEECCSSCCCEE--EEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT-SEEESSTTTTTT
T ss_pred hHhhccccCCEEECCCCccCcc--cCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCC-Ccccccccchhh
Confidence 3455566666666666655110 1113445555556666666555555555555555555555555 33444432 34
Q ss_pred hcCCCCCeeeccccccccc-------------------------CchhhcCCCCCCccceEEeCCCCCcccCcccchhhh
Q 048772 182 EKLMNLRHLIIMNHVYLEY-------------------------MPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEAL 236 (333)
Q Consensus 182 ~~L~~L~~L~l~~~~~l~~-------------------------~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L 236 (333)
.++++|++|++++|..... +|..++.+++|++|++.++.... .....+
T Consensus 123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~ 195 (306)
T 2z66_A 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-------LSPTAF 195 (306)
T ss_dssp TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-------ECTTTT
T ss_pred hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC-------cCHHHh
Confidence 4555555555555442222 33444444444444444333221 112233
Q ss_pred cCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEe
Q 048772 237 KGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYS 316 (333)
Q Consensus 237 ~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~ 316 (333)
..+++|+. |++.+.. ..+.....+..+++|+.|++++|...+. .+..+.. ++++|+.|+++
T Consensus 196 ~~l~~L~~-L~L~~N~----l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~--~~~~L~~L~L~ 256 (306)
T 2z66_A 196 NSLSSLQV-LNMSHNN----FFSLDTFPYKCLNSLQVLDYSLNHIMTS------------KKQELQH--FPSSLAFLNLT 256 (306)
T ss_dssp TTCTTCCE-EECTTSC----CSBCCSGGGTTCTTCCEEECTTSCCCBC------------SSSSCCC--CCTTCCEEECT
T ss_pred cCCCCCCE-EECCCCc----cCccChhhccCcccCCEeECCCCCCccc------------CHHHHHh--hhccCCEEEcc
Confidence 34444444 4444321 1111222355566666666665542222 2233444 13588999988
Q ss_pred eecChh-----hhhhhHhh
Q 048772 317 RYGIWI-----VWKEWVMN 330 (333)
Q Consensus 317 ~~~~~~-----~~p~w~~~ 330 (333)
+|.+.. .++.|+..
T Consensus 257 ~N~~~~~c~~~~~~~~l~~ 275 (306)
T 2z66_A 257 QNDFACTCEHQSFLQWIKD 275 (306)
T ss_dssp TCCEECSGGGHHHHHHHHH
T ss_pred CCCeecccChHHHHHHHHh
Confidence 876531 14567653
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.72 E-value=5e-19 Score=173.05 Aligned_cols=171 Identities=13% Similarity=0.087 Sum_probs=86.1
Q ss_pred cchHhh--cccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCC--cCChhhhcC------CCCCeeeccccccc
Q 048772 130 IPKAMK--NLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLK--RLPQGMEKL------MNLRHLIIMNHVYL 198 (333)
Q Consensus 130 lp~~~~--~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~--~lp~~~~~L------~~L~~L~l~~~~~l 198 (333)
+|..++ ++++|++|++++|.+. .+|..++++++|++|++++|..+. .+|..+++| ++|++|++++|. +
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-L 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-C
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-C
Confidence 444444 5555555555555432 445555555555555555522133 355555444 555555555554 3
Q ss_pred ccCch--hhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCC-CCceE
Q 048772 199 EYMPR--GIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKN-LDRLE 275 (333)
Q Consensus 199 ~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~ 275 (333)
..+|. .++++++|++|++.++...+ ... .+..+++|+. |++.+. ....++..+..+++ |++|+
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g-------~ip-~~~~l~~L~~-L~L~~N-----~l~~lp~~l~~l~~~L~~L~ 383 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEG-------KLP-AFGSEIKLAS-LNLAYN-----QITEIPANFCGFTEQVENLS 383 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEE-------ECC-CCEEEEEESE-EECCSS-----EEEECCTTSEEECTTCCEEE
T ss_pred CccCchhhhccCCCCCEEeCcCCcCcc-------chh-hhCCCCCCCE-EECCCC-----ccccccHhhhhhcccCcEEE
Confidence 45555 55555555555555444331 111 4444455554 554431 11244556666766 77777
Q ss_pred EEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHh
Q 048772 276 LWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVM 329 (333)
Q Consensus 276 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~ 329 (333)
+++|... . ++..+.. ..+++|+.|++++|.+.+.+|.++.
T Consensus 384 Ls~N~l~-----~--------lp~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 384 FAHNKLK-----Y--------IPNIFDA-KSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp CCSSCCS-----S--------CCSCCCT-TCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred ccCCcCc-----c--------cchhhhh-cccCccCEEECcCCcCCCcchhhhc
Confidence 7766422 1 3333322 0023677888877776654566554
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=1.4e-17 Score=161.75 Aligned_cols=115 Identities=21% Similarity=0.250 Sum_probs=87.9
Q ss_pred hhhhHhhhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCC
Q 048772 101 ELEDVFKQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLP 178 (333)
Q Consensus 101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp 178 (333)
.++.++..++.|++|++++|.+ ..+| ..++.+++|++|++++|.++.+|. .++++++|++|++++ +.+..+|
T Consensus 66 lp~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~ 139 (597)
T 3oja_B 66 LPAALLDSFRQVELLNLNDLQI-----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSLP 139 (597)
T ss_dssp ECTHHHHHCCCCSEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCC
T ss_pred cCHHHHccCCCCcEEECCCCCC-----CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC-CCCCCCC
Confidence 3455677888888888888887 4444 467888888888888888887764 568888888888888 6677887
Q ss_pred hh-hhcCCCCCeeecccccccccCc-hhhcCCCCCCccceEEeCCC
Q 048772 179 QG-MEKLMNLRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRT 222 (333)
Q Consensus 179 ~~-~~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~ 222 (333)
.. ++++++|++|++++|. +..+| ..++.+++|++|++.++...
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred HHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCC
Confidence 76 4788888888888887 44544 45888888888887766544
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=1.6e-17 Score=146.32 Aligned_cols=189 Identities=16% Similarity=0.168 Sum_probs=145.1
Q ss_pred cccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcC-ChhhhcCC
Q 048772 109 FTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRL-PQGMEKLM 185 (333)
Q Consensus 109 ~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~l-p~~~~~L~ 185 (333)
.+.|++|++++|.+ ..+| ..+..+++|++|++++|.++.+ |..++++++|++|++++|..+..+ |..+..++
T Consensus 31 ~~~l~~L~l~~n~i-----~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGNRI-----SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105 (285)
T ss_dssp CTTCSEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred CCCceEEEeeCCcC-----CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc
Confidence 46899999999998 5555 4588999999999999999877 678999999999999995448877 67799999
Q ss_pred CCCeeecccccccccC-chhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772 186 NLRHLIIMNHVYLEYM-PRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD 264 (333)
Q Consensus 186 ~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~ 264 (333)
+|++|++++|. +..+ |..++++++|++|++.++.... .....+..+++|+. |++.+. .........
T Consensus 106 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~-L~l~~n----~l~~~~~~~ 172 (285)
T 1ozn_A 106 RLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQA-------LPDDTFRDLGNLTH-LFLHGN----RISSVPERA 172 (285)
T ss_dssp TCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCE-EECCSS----CCCEECTTT
T ss_pred CCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccc-------cCHhHhccCCCccE-EECCCC----cccccCHHH
Confidence 99999999998 5555 5668999999999998876554 22233566677776 777653 222333345
Q ss_pred CcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhh
Q 048772 265 LKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMN 330 (333)
Q Consensus 265 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~ 330 (333)
+..+++|+.|++++|...+. .+..+.. +++|+.|++++|.+....|.++..
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~------------~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~ 223 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHV------------HPHAFRD---LGRLMTLYLFANNLSALPTEALAP 223 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEE------------CTTTTTT---CTTCCEEECCSSCCSCCCHHHHTT
T ss_pred hcCccccCEEECCCCccccc------------CHhHccC---cccccEeeCCCCcCCcCCHHHccc
Confidence 88899999999998853221 2455666 889999999999888723355543
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.71 E-value=2.4e-17 Score=151.62 Aligned_cols=114 Identities=21% Similarity=0.263 Sum_probs=85.2
Q ss_pred hhhHhhhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh
Q 048772 102 LEDVFKQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ 179 (333)
Q Consensus 102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~ 179 (333)
.+.++..+++|++|++++|.+ ..+| ..+..+++|++|++++|.++.+| ..++++++|++|++++ +.+..+|.
T Consensus 61 ~~~~~~~l~~L~~L~L~~n~i-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~ 134 (390)
T 3o6n_A 61 PAALLDSFRQVELLNLNDLQI-----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSLPR 134 (390)
T ss_dssp CTHHHHHCCCCSEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCT
T ss_pred ChhHhcccccCcEEECCCCcc-----cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC-CccCcCCH
Confidence 345567788888888888887 4444 36778888888888888887765 4578888888888888 66778877
Q ss_pred h-hhcCCCCCeeecccccccccCc-hhhcCCCCCCccceEEeCCC
Q 048772 180 G-MEKLMNLRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRT 222 (333)
Q Consensus 180 ~-~~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~ 222 (333)
. ++++++|++|++++|. +..++ ..++.+++|++|++.++...
T Consensus 135 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 135 GIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp TTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred HHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCC
Confidence 6 4778888888888887 45554 44788888888887766544
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.71 E-value=4.4e-18 Score=166.34 Aligned_cols=192 Identities=15% Similarity=0.189 Sum_probs=148.3
Q ss_pred hhhHhh--hcccccceEeeccccccccCCCcchHhhcccccCeeeccCCc-Cc--ccchhhhcc------ccCcEEeccC
Q 048772 102 LEDVFK--QFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR-IK--ELPETCCEL------INLETLEINR 170 (333)
Q Consensus 102 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-i~--~lp~~i~~L------~~L~~L~l~~ 170 (333)
+|..+. ++++|++|++++|.+. ..+|..++++++|++|++++|. ++ .+|..++++ ++|++|++++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNL----TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTC----SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred CchhhhhcccCCCCEEEecCCcCC----ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 555555 7888888888888763 6789999999999999999998 87 599999987 9999999999
Q ss_pred CCCCCcCCh--hhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCccc-ccceeE
Q 048772 171 CTRLKRLPQ--GMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNH-LRGLLK 247 (333)
Q Consensus 171 ~~~~~~lp~--~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~-L~~~L~ 247 (333)
+.+..+|. .++++++|++|++++|...+.+| .++.+++|++|++.++.... .+..+..++. |+. |+
T Consensus 315 -n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~--------lp~~l~~l~~~L~~-L~ 383 (636)
T 4eco_A 315 -NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE--------IPANFCGFTEQVEN-LS 383 (636)
T ss_dssp -SCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE--------CCTTSEEECTTCCE-EE
T ss_pred -CcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc--------ccHhhhhhcccCcE-EE
Confidence 66789999 89999999999999998433899 89999999999987665332 2334566666 776 77
Q ss_pred EcccCCCCCchhhhhhcCcccC--CCCceEEEeccCCCCCCCccchHHHHHHhhhcc-------CCCCCCCceeeEEeee
Q 048772 248 IRMLGDLANVDEAKHVDLKEKK--NLDRLELWFDNVGMPDENEENDEAITKIAKSVR-------VCLLWDNCHPLKYSRY 318 (333)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~L~~L~l~~~ 318 (333)
+.+.. . ..++..+..++ +|+.|+++.|...+. .+..+. . +++|+.|++++|
T Consensus 384 Ls~N~----l-~~lp~~~~~~~l~~L~~L~Ls~N~l~~~------------~p~~l~~~~~~~~~---~~~L~~L~Ls~N 443 (636)
T 4eco_A 384 FAHNK----L-KYIPNIFDAKSVSVMSAIDFSYNEIGSV------------DGKNFDPLDPTPFK---GINVSSINLSNN 443 (636)
T ss_dssp CCSSC----C-SSCCSCCCTTCSSCEEEEECCSSCTTTT------------TTCSSCTTCSSCCC---CCCEEEEECCSS
T ss_pred ccCCc----C-cccchhhhhcccCccCEEECcCCcCCCc------------chhhhccccccccc---CCCCCEEECcCC
Confidence 76532 1 24566666654 899999998864433 333344 3 568999999999
Q ss_pred cChhhhhhhHh
Q 048772 319 GIWIVWKEWVM 329 (333)
Q Consensus 319 ~~~~~~p~w~~ 329 (333)
.+.. +|.++.
T Consensus 444 ~l~~-lp~~~~ 453 (636)
T 4eco_A 444 QISK-FPKELF 453 (636)
T ss_dssp CCCS-CCTHHH
T ss_pred ccCc-CCHHHH
Confidence 9987 887654
No 16
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=9.8e-18 Score=157.35 Aligned_cols=130 Identities=21% Similarity=0.274 Sum_probs=87.9
Q ss_pred HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccch-hhhccccC
Q 048772 86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELPE-TCCELINL 163 (333)
Q Consensus 86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L 163 (333)
..+.+.+.+.. .....+..|.++++|++|++++|.+ ..++ ..+..+++|++|++++|.++.+|. .++++++|
T Consensus 76 ~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 76 NTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSI-----RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp TCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC-----CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred CccEEECcCCc-CceECHHHcCCCCCCCEEECCCCcc-----CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence 44444444432 2233456677888888888888887 4443 567778888888888888887774 46778888
Q ss_pred cEEeccCCCCCCcCCh-hhhcCCCCCeeecccccccccCchh-hcCCCCCCccceEEeCCC
Q 048772 164 ETLEINRCTRLKRLPQ-GMEKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRT 222 (333)
Q Consensus 164 ~~L~l~~~~~~~~lp~-~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~ 222 (333)
++|++++ +.+..+|. .+.++++|++|++++|..+..+|.. +..+++|++|++.++...
T Consensus 150 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 150 RELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CEEECCC-CCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 8888887 56666664 4667777777777776556666653 667777777776655443
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=4.2e-18 Score=170.66 Aligned_cols=91 Identities=20% Similarity=0.250 Sum_probs=51.8
Q ss_pred cchHhhcccccCeeeccCCcCcc------------------cchhhh--ccccCcEEeccCCCCCCcCChhhhcCCCCCe
Q 048772 130 IPKAMKNLIHLRFLKLSWLRIKE------------------LPETCC--ELINLETLEINRCTRLKRLPQGMEKLMNLRH 189 (333)
Q Consensus 130 lp~~~~~l~~L~~L~l~~~~i~~------------------lp~~i~--~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~ 189 (333)
+|..++++++|++|++++|.++. +|..++ ++++|++|++++|.....+|..+++|++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 55556666666666666666555 566555 6666666666664445556666666666666
Q ss_pred eecccccccc--cCchhhcCCC-------CCCccceEEeC
Q 048772 190 LIIMNHVYLE--YMPRGIERLT-------GLRTLSEFVVG 220 (333)
Q Consensus 190 L~l~~~~~l~--~~p~~i~~L~-------~L~~L~~~~~~ 220 (333)
|++++|..+. .+|..+++++ +|++|++.++.
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 6666654222 3555444443 55555555444
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=156.11 Aligned_cols=113 Identities=24% Similarity=0.384 Sum_probs=75.2
Q ss_pred hhHhhhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCCh-
Q 048772 103 EDVFKQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQ- 179 (333)
Q Consensus 103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~- 179 (333)
+..|.++++|++|++++|.+ ..++ ..+..+++|++|++++|.++.+|. .+..+++|++|++++ +.+..+|.
T Consensus 81 ~~~~~~l~~L~~L~Ls~n~i-----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~ 154 (440)
T 3zyj_A 81 VNSFKHLRHLEILQLSRNHI-----RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSY 154 (440)
T ss_dssp TTTTSSCSSCCEEECCSSCC-----CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCS-CCCCEECTT
T ss_pred HHHhhCCCCCCEEECCCCcC-----CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCC-CcccccCHH
Confidence 45567777788888887776 4433 456777777777777777777764 567777777777777 55666554
Q ss_pred hhhcCCCCCeeecccccccccCchh-hcCCCCCCccceEEeCC
Q 048772 180 GMEKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGR 221 (333)
Q Consensus 180 ~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~ 221 (333)
.+.++++|++|++++|..+..+|.. +..+++|++|++.++..
T Consensus 155 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 4666677777777665555555543 66666666666655543
No 19
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=6.6e-17 Score=146.76 Aligned_cols=179 Identities=17% Similarity=0.227 Sum_probs=140.8
Q ss_pred ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCChh-hhcCCC
Q 048772 110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQG-MEKLMN 186 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~ 186 (333)
+.|++|++++|.+ ..+|. .+.++++|++|++++|.++.++ ..++++++|++|++++ +.+..+|.. ++++++
T Consensus 52 ~~L~~L~l~~n~i-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~ 125 (353)
T 2z80_A 52 EAVKSLDLSNNRI-----TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSS 125 (353)
T ss_dssp TTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTT
T ss_pred ccCcEEECCCCcC-----cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCcc
Confidence 5899999999998 66665 6899999999999999999775 6799999999999999 778899876 889999
Q ss_pred CCeeecccccccccCch--hhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772 187 LRHLIIMNHVYLEYMPR--GIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD 264 (333)
Q Consensus 187 L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~ 264 (333)
|++|++++|. +..+|. .++.+++|++|++.++.... ......+..+++|+. |++.+. ...+..+..
T Consensus 126 L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~~l~~L~~-L~l~~n----~l~~~~~~~ 193 (353)
T 2z80_A 126 LTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT------KIQRKDFAGLTFLEE-LEIDAS----DLQSYEPKS 193 (353)
T ss_dssp CSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC------EECTTTTTTCCEEEE-EEEEET----TCCEECTTT
T ss_pred CCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc------ccCHHHccCCCCCCE-EECCCC----CcCccCHHH
Confidence 9999999998 788887 58999999999999875332 223345667777776 777763 233445678
Q ss_pred CcccCCCCceEEEeccCCCCCCCccchHHHHHHhhh-ccCCCCCCCceeeEEeeecChh
Q 048772 265 LKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKS-VRVCLLWDNCHPLKYSRYGIWI 322 (333)
Q Consensus 265 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~L~~L~l~~~~~~~ 322 (333)
++.+++|++|++++|.. .. ++.. ... +++|+.|++++|.+..
T Consensus 194 l~~l~~L~~L~l~~n~l-----~~--------~~~~~~~~---~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 194 LKSIQNVSHLILHMKQH-----IL--------LLEIFVDV---TSSVECLELRDTDLDT 236 (353)
T ss_dssp TTTCSEEEEEEEECSCS-----TT--------HHHHHHHH---TTTEEEEEEESCBCTT
T ss_pred HhccccCCeecCCCCcc-----cc--------chhhhhhh---cccccEEECCCCcccc
Confidence 88999999999998852 11 2222 233 5678999988877654
No 20
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.69 E-value=3.6e-17 Score=147.06 Aligned_cols=110 Identities=22% Similarity=0.289 Sum_probs=72.4
Q ss_pred hhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCCh-h
Q 048772 103 EDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQ-G 180 (333)
Q Consensus 103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~ 180 (333)
+..+.++++|++|++++|.+ ..+ |..+..+++|++|++++|.++.+|..+. ++|++|++++ +.+..+|. .
T Consensus 69 ~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~ 140 (330)
T 1xku_A 69 DGDFKNLKNLHTLILINNKI-----SKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSV 140 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCC-----CCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHH
T ss_pred hhhhccCCCCCEEECCCCcC-----CeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCC-CcccccCHhH
Confidence 34567777788888887777 444 5667777788888887777777776544 5677777776 45555543 3
Q ss_pred hhcCCCCCeeecccccccc---cCchhhcCCCCCCccceEEeCC
Q 048772 181 MEKLMNLRHLIIMNHVYLE---YMPRGIERLTGLRTLSEFVVGR 221 (333)
Q Consensus 181 ~~~L~~L~~L~l~~~~~l~---~~p~~i~~L~~L~~L~~~~~~~ 221 (333)
+.++++|++|++++|. +. ..|..++.+++|++|++.++..
T Consensus 141 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 141 FNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp HTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred hcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCcc
Confidence 6667777777777765 32 3345566677777766655543
No 21
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=1.2e-16 Score=139.66 Aligned_cols=177 Identities=22% Similarity=0.269 Sum_probs=131.9
Q ss_pred ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccchh-hhccccCcEEeccCCCCCCcCChh-hhcCCC
Q 048772 110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELPET-CCELINLETLEINRCTRLKRLPQG-MEKLMN 186 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~ 186 (333)
+.++.|++++|.+ ..+|. .+..+++|++|++++|.++.+|.. +.++++|++|++++ +.+..+|.. +.++++
T Consensus 37 ~~l~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~ 110 (270)
T 2o6q_A 37 ADTKKLDLQSNKL-----SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD-NKLQALPIGVFDQLVN 110 (270)
T ss_dssp TTCSEEECCSSCC-----SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS-SCCCCCCTTTTTTCSS
T ss_pred CCCCEEECcCCCC-----CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC-CcCCcCCHhHcccccC
Confidence 5789999999998 55554 688899999999999999988865 47899999999999 678888754 688999
Q ss_pred CCeeecccccccccCch-hhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772 187 LRHLIIMNHVYLEYMPR-GIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL 265 (333)
Q Consensus 187 L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l 265 (333)
|++|++++|. +..+|. .++.+++|++|++.++.... .....+..+++|+. |++.+.. .....+..+
T Consensus 111 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~-L~L~~n~----l~~~~~~~~ 177 (270)
T 2o6q_A 111 LAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQS-------LPKGVFDKLTSLKE-LRLYNNQ----LKRVPEGAF 177 (270)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCE-EECCSSC----CSCCCTTTT
T ss_pred CCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCc-------cCHhHccCCcccce-eEecCCc----CcEeChhHh
Confidence 9999999988 666664 47899999999998776554 22223556666775 7766522 222233457
Q ss_pred cccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecC
Q 048772 266 KEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGI 320 (333)
Q Consensus 266 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~ 320 (333)
..+++|++|+++.|..... ....+.. +++|+.|++.+|.+
T Consensus 178 ~~l~~L~~L~L~~N~l~~~------------~~~~~~~---l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 178 DKLTELKTLKLDNNQLKRV------------PEGAFDS---LEKLKMLQLQENPW 217 (270)
T ss_dssp TTCTTCCEEECCSSCCSCC------------CTTTTTT---CTTCCEEECCSSCB
T ss_pred ccCCCcCEEECCCCcCCcC------------CHHHhcc---ccCCCEEEecCCCe
Confidence 7889999999998853322 1123455 77899999998764
No 22
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=5.8e-17 Score=144.48 Aligned_cols=177 Identities=19% Similarity=0.189 Sum_probs=134.0
Q ss_pred HhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcC
Q 048772 105 VFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKL 184 (333)
Q Consensus 105 ~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L 184 (333)
.+..+++|++|++++|.+ ..++. +..+++|++|++++|.++.+| .++.+++|++|++++ +.+..+|. +..+
T Consensus 58 ~~~~l~~L~~L~L~~n~i-----~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~-n~l~~~~~-l~~l 128 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQI-----TDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS-TQITDVTP-LAGL 128 (308)
T ss_dssp TGGGCTTCCEEECCSSCC-----CCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT-SCCCCCGG-GTTC
T ss_pred hhhccCCCCEEEccCCcC-----CCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC-CCCCCchh-hcCC
Confidence 357788999999999988 66666 888999999999999988876 588899999999998 66888775 8899
Q ss_pred CCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772 185 MNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD 264 (333)
Q Consensus 185 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~ 264 (333)
++|++|++++|. +..+|. ++.+++|++|++.++.... +..+..+++|+. |++.+..- .. .+ .
T Consensus 129 ~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~---------~~~l~~l~~L~~-L~l~~n~l-~~----~~-~ 190 (308)
T 1h6u_A 129 SNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSD---------LTPLANLSKLTT-LKADDNKI-SD----IS-P 190 (308)
T ss_dssp TTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCC---------CGGGTTCTTCCE-EECCSSCC-CC----CG-G
T ss_pred CCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCC---------ChhhcCCCCCCE-EECCCCcc-Cc----Ch-h
Confidence 999999999987 677765 8889999999988776543 112666777776 77765321 11 11 2
Q ss_pred CcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhh
Q 048772 265 LKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKE 326 (333)
Q Consensus 265 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~ 326 (333)
+..+++|++|++++|...+ +. .+.. +++|+.|++++|.+.. .|.
T Consensus 191 l~~l~~L~~L~L~~N~l~~-------------~~-~l~~---l~~L~~L~l~~N~i~~-~~~ 234 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQISD-------------VS-PLAN---TSNLFIVTLTNQTITN-QPV 234 (308)
T ss_dssp GGGCTTCCEEECTTSCCCB-------------CG-GGTT---CTTCCEEEEEEEEEEC-CCE
T ss_pred hcCCCCCCEEEccCCccCc-------------cc-cccC---CCCCCEEEccCCeeec-CCe
Confidence 7788999999998774321 12 3555 8899999999988765 444
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=1.2e-17 Score=148.53 Aligned_cols=160 Identities=21% Similarity=0.244 Sum_probs=117.8
Q ss_pred hhHhhhcccccceEeeccccccccCCCcc--hHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCc--C
Q 048772 103 EDVFKQFTCLRALRICGENVWEIGNSKIP--KAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKR--L 177 (333)
Q Consensus 103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~--l 177 (333)
+..+..+++|++|++++|.+ ..++ ..+..+++|++|++++|.+..+ |..++++++|++|++++ +.+.. +
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~ 167 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG-NSFQENFL 167 (306)
T ss_dssp EEEEETCTTCCEEECTTSEE-----ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT-CEEGGGEE
T ss_pred hhhcCCCCCCCEEECCCCcc-----cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC-Cccccccc
Confidence 33455667777777777766 4444 3577788888888888887744 46678888999999988 55554 7
Q ss_pred ChhhhcCCCCCeeecccccccccC-chhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCC
Q 048772 178 PQGMEKLMNLRHLIIMNHVYLEYM-PRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLAN 256 (333)
Q Consensus 178 p~~~~~L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~ 256 (333)
|..+..+++|++|++++|. +..+ |..++.+++|++|++.++.... .....+..+++|+. |++.+. .
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~-L~L~~N----~ 234 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFS-------LDTFPYKCLNSLQV-LDYSLN----H 234 (306)
T ss_dssp CSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSB-------CCSGGGTTCTTCCE-EECTTS----C
T ss_pred hhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCc-------cChhhccCcccCCE-eECCCC----C
Confidence 8889999999999999998 5555 6779999999999998776554 22234566777886 888763 3
Q ss_pred chhhhhhcCccc-CCCCceEEEeccC
Q 048772 257 VDEAKHVDLKEK-KNLDRLELWFDNV 281 (333)
Q Consensus 257 ~~~~~~~~l~~l-~~L~~L~l~~~~~ 281 (333)
..+..+..+..+ ++|+.|++++|..
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CcccCHHHHHhhhccCCEEEccCCCe
Confidence 334456677777 4999999998754
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=4.6e-17 Score=152.26 Aligned_cols=185 Identities=18% Similarity=0.233 Sum_probs=148.7
Q ss_pred hhhHhhhcccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCCh
Q 048772 102 LEDVFKQFTCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQ 179 (333)
Q Consensus 102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~ 179 (333)
.+..|.++++|++|++++|.+ ..+|. .+..+++|++|++++|.++.+|. .+.++++|++|++++|+.+..+|.
T Consensus 104 ~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 104 EIGAFNGLANLNTLELFDNRL-----TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp CGGGGTTCSSCCEEECCSSCC-----SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred ChhhccCCccCCEEECCCCcC-----CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 456788999999999999998 66665 58899999999999999998884 789999999999999888888876
Q ss_pred -hhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCch
Q 048772 180 -GMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVD 258 (333)
Q Consensus 180 -~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~ 258 (333)
.+.++++|++|++++|. +..+|. +..+++|++|++.++.... .....+..+++|+. |.+.+. ...
T Consensus 179 ~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~-L~L~~n----~l~ 244 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDELDLSGNHLSA-------IRPGSFQGLMHLQK-LWMIQS----QIQ 244 (440)
T ss_dssp TTTTTCSSCCEEECTTSC-CSSCCC-CTTCSSCCEEECTTSCCCE-------ECTTTTTTCTTCCE-EECTTC----CCC
T ss_pred chhhcccccCeecCCCCc-Cccccc-cCCCcccCEEECCCCccCc-------cChhhhccCccCCE-EECCCC----cee
Confidence 58899999999999998 788874 8899999999998776543 33455667777776 777763 333
Q ss_pred hhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecC
Q 048772 259 EAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGI 320 (333)
Q Consensus 259 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~ 320 (333)
...+..+..+++|+.|+|+.|..... ....+.. +++|+.|++++|.+
T Consensus 245 ~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~---l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 245 VIERNAFDNLQSLVEINLAHNNLTLL------------PHDLFTP---LHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTSSTTCTTCCEEECTTSCCCCC------------CTTTTSS---CTTCCEEECCSSCE
T ss_pred EEChhhhcCCCCCCEEECCCCCCCcc------------ChhHhcc---ccCCCEEEcCCCCc
Confidence 44566788999999999998854322 1234456 78999999998754
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.68 E-value=6.2e-17 Score=145.70 Aligned_cols=108 Identities=29% Similarity=0.398 Sum_probs=65.4
Q ss_pred hhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh-
Q 048772 103 EDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG- 180 (333)
Q Consensus 103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~- 180 (333)
+..+.++++|++|++++|.+ ..+ |..+..+++|++|++++|.++.+|..+. ++|++|++++ +.+..+|..
T Consensus 71 ~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~ 142 (332)
T 2ft3_A 71 KDDFKGLQHLYALVLVNNKI-----SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGV 142 (332)
T ss_dssp TTTTTTCTTCCEEECCSSCC-----CEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGG
T ss_pred HhHhhCCCCCcEEECCCCcc-----CccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCC-CccCccCHhH
Confidence 44556667777777777766 333 4556667777777777777666665544 5677777766 556665543
Q ss_pred hhcCCCCCeeecccccccc---cCchhhcCCCCCCccceEEeC
Q 048772 181 MEKLMNLRHLIIMNHVYLE---YMPRGIERLTGLRTLSEFVVG 220 (333)
Q Consensus 181 ~~~L~~L~~L~l~~~~~l~---~~p~~i~~L~~L~~L~~~~~~ 220 (333)
+.++++|++|++++|. +. ..|..++.+ +|++|++..+.
T Consensus 143 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp GSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred hCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCC
Confidence 5667777777776665 32 233445555 55555554443
No 26
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=1.6e-16 Score=139.00 Aligned_cols=184 Identities=16% Similarity=0.252 Sum_probs=141.9
Q ss_pred hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh-hhcC
Q 048772 106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG-MEKL 184 (333)
Q Consensus 106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L 184 (333)
...+++|+.|++.++.+ ..++ .+..+++|++|++++|.++.++ .++++++|++|++++ +.+..+|.. ++++
T Consensus 37 ~~~l~~L~~L~l~~~~i-----~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l 108 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDI-----KSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG-NQLQSLPNGVFDKL 108 (272)
T ss_dssp HHHHTTCCEEECTTSCC-----CCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT-SCCCCCCTTTTTTC
T ss_pred cccccceeeeeeCCCCc-----cccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC-CccCccChhHhcCC
Confidence 35689999999999998 5654 5889999999999999998875 789999999999999 678877755 6899
Q ss_pred CCCCeeecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhh
Q 048772 185 MNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHV 263 (333)
Q Consensus 185 ~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~ 263 (333)
++|++|++++|. +..+|.. ++.+++|++|++.++.... .....+..++.|+. |++.+.. ..+..+.
T Consensus 109 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~l~~L~~-L~l~~n~----l~~~~~~ 175 (272)
T 3rfs_A 109 TNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQS-------LPKGVFDKLTNLTE-LDLSYNQ----LQSLPEG 175 (272)
T ss_dssp TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCE-EECCSSC----CCCCCTT
T ss_pred cCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCc-------cCHHHhccCccCCE-EECCCCC----cCccCHH
Confidence 999999999998 6777655 7999999999998876554 22233566677776 7777632 2233344
Q ss_pred cCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhh
Q 048772 264 DLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWK 325 (333)
Q Consensus 264 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p 325 (333)
.++.+++|++|+++.|...+. .+..+.. +++|+.|++.+|.....+|
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~---l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSV------------PDGVFDR---LTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCC------------CTTTTTT---CTTCCEEECCSSCBCCCTT
T ss_pred HhcCCccCCEEECCCCcCCcc------------CHHHHhC---CcCCCEEEccCCCccccCc
Confidence 578899999999998864322 2233455 7899999999987654244
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=150.20 Aligned_cols=174 Identities=28% Similarity=0.341 Sum_probs=120.0
Q ss_pred HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccch-hhhccccC
Q 048772 86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPE-TCCELINL 163 (333)
Q Consensus 86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L 163 (333)
..+.+.+.+.. .....+..|.++++|++|++++|.+ ..+ |..+.++++|++|++++|.++.+|. .++++++|
T Consensus 33 ~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 33 ETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIV-----SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp TCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCcEEECCCCc-cceECHhHccCCCCCCEEECCCCcc-----CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 44445554433 2233356778889999999999987 444 6678889999999999999888885 46889999
Q ss_pred cEEeccCCCCCCcC-ChhhhcCCCCCeeecccccccccC-chhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCccc
Q 048772 164 ETLEINRCTRLKRL-PQGMEKLMNLRHLIIMNHVYLEYM-PRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNH 241 (333)
Q Consensus 164 ~~L~l~~~~~~~~l-p~~~~~L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~ 241 (333)
++|++++ +.+..+ |..+.++++|++|++++|. +..+ |..++.+++|++|++.++.... .....+..++.
T Consensus 107 ~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~l~~l~~ 177 (477)
T 2id5_A 107 TKLDISE-NKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTS-------IPTEALSHLHG 177 (477)
T ss_dssp CEEECTT-SCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSS-------CCHHHHTTCTT
T ss_pred CEEECCC-CccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcc-------cChhHhcccCC
Confidence 9999998 555544 5678888999999998887 4444 4568888888888888776543 22334556666
Q ss_pred ccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEec
Q 048772 242 LRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFD 279 (333)
Q Consensus 242 L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 279 (333)
|+. |++.... ........+..+++|+.|+++.|
T Consensus 178 L~~-L~l~~n~----i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 178 LIV-LRLRHLN----INAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp CCE-EEEESCC----CCEECTTCSCSCTTCCEEEEECC
T ss_pred CcE-EeCCCCc----CcEeChhhcccCcccceeeCCCC
Confidence 665 6666522 22223345666666777766654
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=5.6e-17 Score=152.17 Aligned_cols=186 Identities=19% Similarity=0.204 Sum_probs=149.6
Q ss_pred hhhhHhhhcccccceEeeccccccccCCCcchH-hhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCC
Q 048772 101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKA-MKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLP 178 (333)
Q Consensus 101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp 178 (333)
..+..|..+++|++|++++|.+ ..+|.. +..+++|++|++++|.++.+|. .+.++++|++|++++|+.+..+|
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 114 IEVGAFNGLASLNTLELFDNWL-----TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCC-----SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred cChhhccCcccCCEEECCCCcC-----CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 3456788999999999999998 666654 7889999999999999998885 78999999999999988898887
Q ss_pred h-hhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCc
Q 048772 179 Q-GMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANV 257 (333)
Q Consensus 179 ~-~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~ 257 (333)
. .+.++++|++|++++|. +..+| .+..+++|++|++.++.... .....+..+++|+. |++.+. ..
T Consensus 189 ~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~-L~L~~n----~l 254 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELEMSGNHFPE-------IRPGSFHGLSSLKK-LWVMNS----QV 254 (452)
T ss_dssp TTTTTTCTTCCEEECTTSC-CSSCC-CCTTCTTCCEEECTTSCCSE-------ECGGGGTTCTTCCE-EECTTS----CC
T ss_pred hhhccCCCCCCEEECCCCc-ccccc-cccccccccEEECcCCcCcc-------cCcccccCccCCCE-EEeCCC----cC
Confidence 6 48899999999999998 77886 48899999999998776553 33456777778886 887763 33
Q ss_pred hhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecC
Q 048772 258 DEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGI 320 (333)
Q Consensus 258 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~ 320 (333)
....+..+..+++|+.|+|+.|..... ....+.. +++|+.|++++|..
T Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~---l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 255 SLIERNAFDGLASLVELNLAHNNLSSL------------PHDLFTP---LRYLVELHLHHNPW 302 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCC------------CTTSSTT---CTTCCEEECCSSCE
T ss_pred ceECHHHhcCCCCCCEEECCCCcCCcc------------ChHHhcc---ccCCCEEEccCCCc
Confidence 344566788999999999998864322 1234456 78999999998754
No 29
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=4.4e-17 Score=143.99 Aligned_cols=183 Identities=18% Similarity=0.102 Sum_probs=141.8
Q ss_pred ccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCC
Q 048772 110 TCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLR 188 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~ 188 (333)
+.+++|++++|.+ ..+ |..+..+++|++|++++|.++.+|.. +.+++|++|++++ +.+..+|..+..+++|+
T Consensus 31 ~~l~~L~L~~N~l-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~ 103 (290)
T 1p9a_G 31 KDTTILHLSENLL-----YTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALT 103 (290)
T ss_dssp TTCCEEECTTSCC-----SEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCS-SCCSSCCCCTTTCTTCC
T ss_pred CCCCEEEcCCCcC-----CccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCC-CcCCcCchhhccCCCCC
Confidence 6899999999998 444 46789999999999999999988865 8999999999999 78999999999999999
Q ss_pred eeecccccccccCch-hhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcc
Q 048772 189 HLIIMNHVYLEYMPR-GIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKE 267 (333)
Q Consensus 189 ~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 267 (333)
+|++++|. +..+|. .++.+++|++|++.++.... .....+..+++|+. |++.+.. ........+..
T Consensus 104 ~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~-L~L~~N~----l~~l~~~~~~~ 170 (290)
T 1p9a_G 104 VLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKT-------LPPGLLTPTPKLEK-LSLANNN----LTELPAGLLNG 170 (290)
T ss_dssp EEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCC-------CCTTTTTTCTTCCE-EECTTSC----CSCCCTTTTTT
T ss_pred EEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCc-------cChhhcccccCCCE-EECCCCc----CCccCHHHhcC
Confidence 99999998 777774 58999999999998776554 22233556677776 7776532 22222345678
Q ss_pred cCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecCh------hhhhhhHh
Q 048772 268 KKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIW------IVWKEWVM 329 (333)
Q Consensus 268 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~------~~~p~w~~ 329 (333)
+++|+.|+++.|... . ++..+.. .++|+.|++.+|.+. . +..|+.
T Consensus 171 l~~L~~L~L~~N~l~-----~--------ip~~~~~---~~~L~~l~L~~Np~~C~c~~~~-l~~wl~ 221 (290)
T 1p9a_G 171 LENLDTLLLQENSLY-----T--------IPKGFFG---SHLLPFAFLHGNPWLCNCEILY-FRRWLQ 221 (290)
T ss_dssp CTTCCEEECCSSCCC-----C--------CCTTTTT---TCCCSEEECCSCCBCCSGGGHH-HHHHHH
T ss_pred cCCCCEEECCCCcCC-----c--------cChhhcc---cccCCeEEeCCCCccCcCccHH-HHHHHH
Confidence 999999999988532 1 4455555 678999999987542 2 456765
No 30
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=2e-16 Score=140.94 Aligned_cols=175 Identities=18% Similarity=0.176 Sum_probs=141.3
Q ss_pred hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCC
Q 048772 107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMN 186 (333)
Q Consensus 107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~ 186 (333)
..+++|+.|++++|.+ ..+| .+..+++|++|++++|.++.+|. ++.+++|++|++++ +.+..+| .+..+++
T Consensus 38 ~~l~~L~~L~l~~~~i-----~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~-n~l~~~~-~~~~l~~ 108 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGV-----TTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG-NPLKNVS-AIAGLQS 108 (308)
T ss_dssp HHHHTCCEEECTTSCC-----CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCS-CCCSCCG-GGTTCTT
T ss_pred HHcCCcCEEEeeCCCc-----cCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccC-CcCCCch-hhcCCCC
Confidence 4689999999999998 6676 68899999999999999999988 99999999999999 6688886 6999999
Q ss_pred CCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCc
Q 048772 187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLK 266 (333)
Q Consensus 187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~ 266 (333)
|++|++++|. +..+|. ++.+++|++|++.++.... . ..+..+++|+. |++.+..- . ..+. +.
T Consensus 109 L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~------~---~~l~~l~~L~~-L~l~~n~l-~----~~~~-l~ 170 (308)
T 1h6u_A 109 IKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITN------I---SPLAGLTNLQY-LSIGNAQV-S----DLTP-LA 170 (308)
T ss_dssp CCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCC------C---GGGGGCTTCCE-EECCSSCC-C----CCGG-GT
T ss_pred CCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccCc------C---ccccCCCCccE-EEccCCcC-C----CChh-hc
Confidence 9999999998 777875 9999999999998877654 1 12666777776 77776321 1 1222 88
Q ss_pred ccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhh
Q 048772 267 EKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKE 326 (333)
Q Consensus 267 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~ 326 (333)
.+++|+.|++++|..... . .+.. +++|++|++++|.+.. +|.
T Consensus 171 ~l~~L~~L~l~~n~l~~~-------------~-~l~~---l~~L~~L~L~~N~l~~-~~~ 212 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDI-------------S-PLAS---LPNLIEVHLKNNQISD-VSP 212 (308)
T ss_dssp TCTTCCEEECCSSCCCCC-------------G-GGGG---CTTCCEEECTTSCCCB-CGG
T ss_pred CCCCCCEEECCCCccCcC-------------h-hhcC---CCCCCEEEccCCccCc-ccc
Confidence 899999999998853211 1 2555 8899999999999887 663
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.67 E-value=1.7e-17 Score=161.25 Aligned_cols=158 Identities=16% Similarity=0.074 Sum_probs=75.1
Q ss_pred hcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcC-C-hhhhcCC
Q 048772 108 QFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRL-P-QGMEKLM 185 (333)
Q Consensus 108 ~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~l-p-~~~~~L~ 185 (333)
.+++|++|++++|.+... ..+|..+..+++|++|++++|.+..+|..++.+++|++|++++ +.+..+ | ..+.+++
T Consensus 348 ~l~~L~~L~ls~n~l~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFS--GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH-STLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCTTCCEEECCSSCEEEE--EECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTT-SEEESTTTTTTTTTCT
T ss_pred cCCCCCEEECcCCccCCC--cchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCC-CccCCccChhhhhccc
Confidence 344455555555544100 0124555566666666666666555555555666666666665 333333 2 2455555
Q ss_pred CCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772 186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL 265 (333)
Q Consensus 186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l 265 (333)
+|++|++++|......|..++.+++|++|++.++.... ......+..++.|+. |++.+. ...+..+..+
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~~l~~L~~-L~Ls~n----~l~~~~~~~~ 493 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD------NTLSNVFANTTNLTF-LDLSKC----QLEQISWGVF 493 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG------GEECSCCTTCTTCCE-EECTTS----CCCEECTTTT
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC------cchHHhhccCCCCCE-EECCCC----cCCccChhhh
Confidence 56666655555333344445555555555554433221 011223334444444 444442 1222233445
Q ss_pred cccCCCCceEEEec
Q 048772 266 KEKKNLDRLELWFD 279 (333)
Q Consensus 266 ~~l~~L~~L~l~~~ 279 (333)
..+++|++|++++|
T Consensus 494 ~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 494 DTLHRLQLLNMSHN 507 (606)
T ss_dssp TTCTTCCEEECCSS
T ss_pred cccccCCEEECCCC
Confidence 55555555555554
No 32
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=1.2e-16 Score=140.04 Aligned_cols=204 Identities=18% Similarity=0.151 Sum_probs=144.2
Q ss_pred HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccc-hhhhccccC
Q 048772 86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELP-ETCCELINL 163 (333)
Q Consensus 86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L 163 (333)
.++.+.+.+... ....+..+.++++|++|++++|.+ ..++. .+..+++|++|++++|.++.++ ..++++++|
T Consensus 29 ~l~~L~ls~n~l-~~~~~~~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 29 STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp TCCEEECTTCCC-CEECTTTTTTCTTCSEEECTTCCC-----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CccEEECCCCcc-cccCHhHhccccCCcEEECCCCcC-----CccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 444455544332 222344678899999999999988 55554 6888999999999999998776 678999999
Q ss_pred cEEeccCCCCCCcCCh-hhhcCCCCCeeeccccccccc--CchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcc
Q 048772 164 ETLEINRCTRLKRLPQ-GMEKLMNLRHLIIMNHVYLEY--MPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMN 240 (333)
Q Consensus 164 ~~L~l~~~~~~~~lp~-~~~~L~~L~~L~l~~~~~l~~--~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~ 240 (333)
++|++++ +.+..++. .++++++|++|++++|. +.. +|..++.+++|++|++.++.... .....+..+.+|+
T Consensus 103 ~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~ 176 (276)
T 2z62_A 103 QKLVAVE-TNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQS----IYCTDLRVLHQMP 176 (276)
T ss_dssp CEEECTT-SCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCE----ECGGGGHHHHTCT
T ss_pred cEEECCC-CCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCc----CCHHHhhhhhhcc
Confidence 9999999 66777665 68899999999999998 554 68889999999999998877654 1133455666666
Q ss_pred cccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecC
Q 048772 241 HLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGI 320 (333)
Q Consensus 241 ~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~ 320 (333)
.|...+++.+.. . ...+.......+|+.|++++|..... ....+.. +++|+.|++++|.+
T Consensus 177 ~l~l~L~ls~n~----l-~~~~~~~~~~~~L~~L~L~~n~l~~~------------~~~~~~~---l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 177 LLNLSLDLSLNP----M-NFIQPGAFKEIRLKELALDTNQLKSV------------PDGIFDR---LTSLQKIWLHTNPW 236 (276)
T ss_dssp TCCEEEECCSSC----C-CEECTTSSCSCCEEEEECCSSCCSCC------------CTTTTTT---CCSCCEEECCSSCB
T ss_pred ccceeeecCCCc----c-cccCccccCCCcccEEECCCCceeec------------CHhHhcc---cccccEEEccCCcc
Confidence 554125555421 1 12223333345899999998853322 1123455 78899999998866
Q ss_pred h
Q 048772 321 W 321 (333)
Q Consensus 321 ~ 321 (333)
.
T Consensus 237 ~ 237 (276)
T 2z62_A 237 D 237 (276)
T ss_dssp C
T ss_pred c
Confidence 4
No 33
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=4.7e-17 Score=163.08 Aligned_cols=160 Identities=17% Similarity=0.218 Sum_probs=126.0
Q ss_pred hhhHhhhcccccceEeeccccccccCCC------------------cchHhh--cccccCeeeccCCcC-cccchhhhcc
Q 048772 102 LEDVFKQFTCLRALRICGENVWEIGNSK------------------IPKAMK--NLIHLRFLKLSWLRI-KELPETCCEL 160 (333)
Q Consensus 102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~------------------lp~~~~--~l~~L~~L~l~~~~i-~~lp~~i~~L 160 (333)
+|..+.++++|++|++++|.+ .. +|..++ ++++|++|++++|.+ ..+|..++++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~L-----sg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCC-----CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred hhHHHhcCCCCCEEECcCCcC-----CCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 677788999999999999998 44 888877 999999999999984 4889999999
Q ss_pred ccCcEEeccCCCCCC--cCChhhhcCC-------CCCeeecccccccccCch--hhcCCCCCCccceEEeCCCCCcccCc
Q 048772 161 INLETLEINRCTRLK--RLPQGMEKLM-------NLRHLIIMNHVYLEYMPR--GIERLTGLRTLSEFVVGRTGGEHASK 229 (333)
Q Consensus 161 ~~L~~L~l~~~~~~~--~lp~~~~~L~-------~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~ 229 (333)
++|++|++++|..+. .+|..+++++ +|++|++++|. +..+|. .++++++|++|++.++....
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~------ 587 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRH------ 587 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCB------
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCccc------
Confidence 999999999944366 4888888777 99999999998 668998 89999999999987765442
Q ss_pred ccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCC-CCceEEEeccCC
Q 048772 230 VCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKN-LDRLELWFDNVG 282 (333)
Q Consensus 230 ~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~ 282 (333)
+..+..+++|+. |++.+.. .. .++..+..+++ |+.|+++.|...
T Consensus 588 ---lp~~~~L~~L~~-L~Ls~N~----l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 588 ---LEAFGTNVKLTD-LKLDYNQ----IE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp ---CCCCCTTSEESE-EECCSSC----CS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred ---chhhcCCCcceE-EECcCCc----cc-cchHHHhhccccCCEEECcCCCCC
Confidence 115666777776 7776532 12 45667778887 888888877543
No 34
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=4.1e-16 Score=137.79 Aligned_cols=172 Identities=15% Similarity=0.177 Sum_probs=105.2
Q ss_pred hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCC
Q 048772 107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMN 186 (333)
Q Consensus 107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~ 186 (333)
..++.|+.|++++|.+ ..+| .+..+++|++|++++|.++.++. ++++++|++|++++ +.+..+|. ++.+++
T Consensus 43 ~~l~~L~~L~l~~~~i-----~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~-l~~l~~ 113 (291)
T 1h6t_A 43 NELNSIDQIIANNSDI-----KSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE-NKVKDLSS-LKDLKK 113 (291)
T ss_dssp HHHHTCCEEECTTSCC-----CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCGGG-GTTCTT
T ss_pred hhcCcccEEEccCCCc-----ccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC-CcCCCChh-hccCCC
Confidence 3566777777777766 4554 36667777777777777776665 77777777777777 55666553 677777
Q ss_pred CCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCc
Q 048772 187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLK 266 (333)
Q Consensus 187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~ 266 (333)
|++|++++|. +..+| .++.+++|++|++.++.... . ..+..+++|+. |++.+..- .+ .+. +.
T Consensus 114 L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~------~---~~l~~l~~L~~-L~L~~N~l----~~-~~~-l~ 175 (291)
T 1h6t_A 114 LKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD------I---TVLSRLTKLDT-LSLEDNQI----SD-IVP-LA 175 (291)
T ss_dssp CCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCC------C---GGGGGCTTCSE-EECCSSCC----CC-CGG-GT
T ss_pred CCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCc------c---hhhccCCCCCE-EEccCCcc----cc-chh-hc
Confidence 7777777776 55553 46677777777776655443 1 34455555554 55554211 11 111 66
Q ss_pred ccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChh
Q 048772 267 EKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWI 322 (333)
Q Consensus 267 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~ 322 (333)
.+++|+.|+++.|.... + ..+.. +++|+.|++++|....
T Consensus 176 ~l~~L~~L~L~~N~i~~-------------l-~~l~~---l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISD-------------L-RALAG---LKNLDVLELFSQECLN 214 (291)
T ss_dssp TCTTCCEEECCSSCCCB-------------C-GGGTT---CTTCSEEEEEEEEEEC
T ss_pred CCCccCEEECCCCcCCC-------------C-hhhcc---CCCCCEEECcCCcccC
Confidence 67777777777663211 1 23444 6677777777765543
No 35
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=3e-17 Score=146.57 Aligned_cols=211 Identities=16% Similarity=0.139 Sum_probs=144.0
Q ss_pred HHHHHHhhhhHhcCCccchhhhhHhh-------hcccccceEeeccccccccCCCcchHh--hcccccCeeeccCCcCcc
Q 048772 82 EWITASRRLQIKGIPQEKKELEDVFK-------QFTCLRALRICGENVWEIGNSKIPKAM--KNLIHLRFLKLSWLRIKE 152 (333)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~lp~~~--~~l~~L~~L~l~~~~i~~ 152 (333)
.+....+.+.+.+.......++..+. ++++|++|++++|.+. ..+|..+ ..+++|++|++++|.++.
T Consensus 60 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 135 (312)
T 1wwl_A 60 QFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT----GTAPPPLLEATGPDLNILNLRNVSWAT 135 (312)
T ss_dssp HHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB----SCCCCCSSSCCSCCCSEEEEESCBCSS
T ss_pred HHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc----chhHHHHHHhcCCCccEEEccCCCCcc
Confidence 34444555555443332223344333 6889999999999982 3567765 889999999999999998
Q ss_pred cchhhhcc-----ccCcEEeccCCCCCCcCC-hhhhcCCCCCeeeccccccccc--Cchhh--cCCCCCCccceEEeCCC
Q 048772 153 LPETCCEL-----INLETLEINRCTRLKRLP-QGMEKLMNLRHLIIMNHVYLEY--MPRGI--ERLTGLRTLSEFVVGRT 222 (333)
Q Consensus 153 lp~~i~~L-----~~L~~L~l~~~~~~~~lp-~~~~~L~~L~~L~l~~~~~l~~--~p~~i--~~L~~L~~L~~~~~~~~ 222 (333)
+|..++.+ ++|++|++++ +.+..+| ..++++++|++|++++|...+. +|..+ +.+++|++|++.++...
T Consensus 136 ~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 136 RDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp SSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred hhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 89888888 8999999999 6677766 7789999999999999974333 34455 88999999998877654
Q ss_pred CCcccCcccchhh-hcCcccccceeEEcccCCCCCchhhh-hhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhh
Q 048772 223 GGEHASKVCKLEA-LKGMNHLRGLLKIRMLGDLANVDEAK-HVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKS 300 (333)
Q Consensus 223 ~~~~~~~~~~~~~-L~~L~~L~~~L~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 300 (333)
. .+..... ...+++|+. |++.+.. ..+.. ...+..+++|++|++++|... . ++..
T Consensus 215 ~-----~~~~~~~~~~~l~~L~~-L~Ls~N~----l~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~--------ip~~ 271 (312)
T 1wwl_A 215 T-----PSGVCSALAAARVQLQG-LDLSHNS----LRDAAGAPSCDWPSQLNSLNLSFTGLK-----Q--------VPKG 271 (312)
T ss_dssp C-----HHHHHHHHHHTTCCCSE-EECTTSC----CCSSCCCSCCCCCTTCCEEECTTSCCS-----S--------CCSS
T ss_pred c-----hHHHHHHHHhcCCCCCE-EECCCCc----CCcccchhhhhhcCCCCEEECCCCccC-----h--------hhhh
Confidence 3 1122222 345677776 7777632 12212 234556789999999887432 1 1111
Q ss_pred ccCCCCCCCceeeEEeeecChhhhhh
Q 048772 301 VRVCLLWDNCHPLKYSRYGIWIVWKE 326 (333)
Q Consensus 301 l~~~~~~~~L~~L~l~~~~~~~~~p~ 326 (333)
++++|+.|++++|.+.+ +|.
T Consensus 272 -----~~~~L~~L~Ls~N~l~~-~p~ 291 (312)
T 1wwl_A 272 -----LPAKLSVLDLSYNRLDR-NPS 291 (312)
T ss_dssp -----CCSEEEEEECCSSCCCS-CCC
T ss_pred -----ccCCceEEECCCCCCCC-Chh
Confidence 12578888888888877 665
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.66 E-value=3.5e-16 Score=151.93 Aligned_cols=133 Identities=23% Similarity=0.252 Sum_probs=104.7
Q ss_pred HHHHHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCccc-chhhhcc
Q 048772 83 WITASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKEL-PETCCEL 160 (333)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L 160 (333)
+...++.+.+.+... ....+..|.++++|++|++++|.+ ..+ |..+.++++|++|++++|.++.+ |..++++
T Consensus 30 ~~~~l~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l-----~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPL-KILKSYSFSNFSELQWLDLSRCEI-----ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp SCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTCCC-----CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCCCcCEEECCCCCc-CEeChhhccCCccCcEEeCCCCcc-----cccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 334455555554432 233455778899999999999988 454 55688999999999999998877 7889999
Q ss_pred ccCcEEeccCCCCCCcCC-hhhhcCCCCCeeecccccccc--cCchhhcCCCCCCccceEEeCCCC
Q 048772 161 INLETLEINRCTRLKRLP-QGMEKLMNLRHLIIMNHVYLE--YMPRGIERLTGLRTLSEFVVGRTG 223 (333)
Q Consensus 161 ~~L~~L~l~~~~~~~~lp-~~~~~L~~L~~L~l~~~~~l~--~~p~~i~~L~~L~~L~~~~~~~~~ 223 (333)
++|++|++++ +.+..+| ..++++++|++|++++|. +. .+|..++++++|++|++.++....
T Consensus 104 ~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 104 TSLENLVAVE-TKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TTCCEEECTT-SCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred ccCCEEEccC-CccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCccee
Confidence 9999999999 6677766 678999999999999998 44 578889999999999988776543
No 37
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=4.8e-16 Score=134.33 Aligned_cols=103 Identities=23% Similarity=0.391 Sum_probs=51.2
Q ss_pred cccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hhhcCCCC
Q 048772 111 CLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GMEKLMNL 187 (333)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L 187 (333)
.++.|++++|.+ ..++ ..+..+++|++|++++|.++.++ ..+.++++|++|++++ +.+..+|. .+..+++|
T Consensus 36 ~l~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L 109 (251)
T 3m19_A 36 DTEKLDLQSTGL-----ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN-NQLASLPLGVFDHLTQL 109 (251)
T ss_dssp TCCEEECTTSCC-----CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTC
T ss_pred CCCEEEccCCCc-----CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC-CcccccChhHhcccCCC
Confidence 455555555555 2222 23455555555555555555443 2345555555555555 44444442 24455555
Q ss_pred CeeecccccccccCchh-hcCCCCCCccceEEeC
Q 048772 188 RHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVG 220 (333)
Q Consensus 188 ~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~ 220 (333)
++|++++|. +..+|.. ++.+++|++|++.++.
T Consensus 110 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 110 DKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ 142 (251)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCc-CCCcChhHhccCCcccEEECcCCc
Confidence 555555554 4444433 3455555555554443
No 38
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=3e-16 Score=138.64 Aligned_cols=174 Identities=20% Similarity=0.159 Sum_probs=124.2
Q ss_pred HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcE
Q 048772 86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLET 165 (333)
Q Consensus 86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~ 165 (333)
..+.+.+.+... ....+..+..+++|++|++++|.+ ..+|.. +.+++|++|++++|.++.+|..+..+++|++
T Consensus 32 ~l~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 104 (290)
T 1p9a_G 32 DTTILHLSENLL-YTFSLATLMPYTRLTQLNLDRAEL-----TKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 104 (290)
T ss_dssp TCCEEECTTSCC-SEEEGGGGTTCTTCCEEECTTSCC-----CEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCE
T ss_pred CCCEEEcCCCcC-CccCHHHhhcCCCCCEEECCCCcc-----CcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCE
Confidence 334444443332 233456678888999999999888 566543 7788899999999998888888888999999
Q ss_pred EeccCCCCCCcCC-hhhhcCCCCCeeecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCccccc
Q 048772 166 LEINRCTRLKRLP-QGMEKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLR 243 (333)
Q Consensus 166 L~l~~~~~~~~lp-~~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 243 (333)
|++++ +.+..+| ..+.++++|++|++++|. +..+|.+ +..+++|++|++.++.... .....+..+++|+
T Consensus 105 L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 105 LDVSF-NRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTE-------LPAGLLNGLENLD 175 (290)
T ss_dssp EECCS-SCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSC-------CCTTTTTTCTTCC
T ss_pred EECCC-CcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCc-------cCHHHhcCcCCCC
Confidence 99998 6788776 458888999999999887 6777765 6788899998887766543 1122344556666
Q ss_pred ceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccC
Q 048772 244 GLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNV 281 (333)
Q Consensus 244 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 281 (333)
. |++.+.. ...++..+....+|+.|++++|..
T Consensus 176 ~-L~L~~N~-----l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 176 T-LLLQENS-----LYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp E-EECCSSC-----CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred E-EECCCCc-----CCccChhhcccccCCeEEeCCCCc
Confidence 5 6665421 224556666777888898887754
No 39
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=1.7e-16 Score=139.06 Aligned_cols=183 Identities=15% Similarity=0.147 Sum_probs=137.1
Q ss_pred ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCC-hhhhcCCC
Q 048772 110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLP-QGMEKLMN 186 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~~~~L~~ 186 (333)
+.|++|++++|.+ ..++. .+..+++|++|++++|.++.++. .++++++|++|++++ +.+..+| ..+.++++
T Consensus 28 ~~l~~L~ls~n~l-----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSS 101 (276)
T ss_dssp TTCCEEECTTCCC-----CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTT
T ss_pred CCccEEECCCCcc-----cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC-CccCccChhhhcCCcc
Confidence 4799999999998 55554 68899999999999999998874 789999999999999 6677665 56899999
Q ss_pred CCeeecccccccccCch-hhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772 187 LRHLIIMNHVYLEYMPR-GIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL 265 (333)
Q Consensus 187 L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l 265 (333)
|++|++++|. +..++. .++.+++|++|++.++.... ......+..+++|+. |++.+.. ..+..+..+
T Consensus 102 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~l~~~~~~l~~L~~-L~Ls~N~----l~~~~~~~~ 169 (276)
T 2z62_A 102 LQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQS------FKLPEYFSNLTNLEH-LDLSSNK----IQSIYCTDL 169 (276)
T ss_dssp CCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCC------CCCCGGGGGCTTCCE-EECCSSC----CCEECGGGG
T ss_pred ccEEECCCCC-ccccCchhcccCCCCCEEECcCCccce------ecCchhhccCCCCCE-EECCCCC----CCcCCHHHh
Confidence 9999999998 666665 59999999999998876553 223455667777776 7777632 222233455
Q ss_pred cccCCCC----ceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhh
Q 048772 266 KEKKNLD----RLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEW 327 (333)
Q Consensus 266 ~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w 327 (333)
..+++|+ .|++++|... . ++..... ..+|+.|++++|.+.. +|.+
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~-----~--------~~~~~~~---~~~L~~L~L~~n~l~~-~~~~ 218 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMN-----F--------IQPGAFK---EIRLKELALDTNQLKS-VPDG 218 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCC-----E--------ECTTSSC---SCCEEEEECCSSCCSC-CCTT
T ss_pred hhhhhccccceeeecCCCccc-----c--------cCccccC---CCcccEEECCCCceee-cCHh
Confidence 5566666 6777766421 1 2223333 4589999999999888 7764
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.65 E-value=1e-16 Score=150.23 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=26.5
Q ss_pred hHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccC
Q 048772 104 DVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINR 170 (333)
Q Consensus 104 ~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~ 170 (333)
..+.++++|++|++++|.+. ..+ |..+..+++|++|++++|.++.+ |..++++++|++|++++
T Consensus 48 ~~~~~l~~L~~L~L~~n~~~----~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 112 (455)
T 3v47_A 48 TSFSRLQDLQFLKVEQQTPG----LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112 (455)
T ss_dssp TTTSSCTTCCEEECCCCSTT----CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTT
T ss_pred hHhccCccccEEECcCCccc----ceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCC
Confidence 33444444444444444431 122 22344444444444444444433 33444444444444444
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.64 E-value=3.8e-16 Score=143.65 Aligned_cols=109 Identities=19% Similarity=0.284 Sum_probs=95.2
Q ss_pred hcccccceEeeccccccccCCCcchH-hhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCC-hhhhcC
Q 048772 108 QFTCLRALRICGENVWEIGNSKIPKA-MKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLP-QGMEKL 184 (333)
Q Consensus 108 ~~~~L~~L~l~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp-~~~~~L 184 (333)
.++++++|+++++.+ ..+|.. +..+++|++|++++|.++.+| ..++.+++|++|++++ +.+..+| ..++++
T Consensus 43 ~l~~l~~l~l~~~~l-----~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM-----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNV 116 (390)
T ss_dssp GGCCCSEEEEESCEE-----SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTC
T ss_pred ccCCceEEEecCCch-----hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCC-CCCCcCCHHHhcCC
Confidence 468999999999998 778766 688999999999999999887 4899999999999999 6677775 458999
Q ss_pred CCCCeeecccccccccCchh-hcCCCCCCccceEEeCCCC
Q 048772 185 MNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTG 223 (333)
Q Consensus 185 ~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~ 223 (333)
++|++|++++|. +..+|.. ++++++|++|++.++....
T Consensus 117 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 117 PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCc
Confidence 999999999998 7889877 5899999999998876543
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.64 E-value=4.3e-16 Score=139.98 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=83.0
Q ss_pred hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCC---cC
Q 048772 102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLK---RL 177 (333)
Q Consensus 102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~---~l 177 (333)
.+..+..+++|++|++++|.+ ..+|..+. ++|++|++++|.++.++ ..++++++|++|++++ +.+. ..
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l-----~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~ 163 (330)
T 1xku_A 92 SPGAFAPLVKLERLYLSKNQL-----KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIE 163 (330)
T ss_dssp CTTTTTTCTTCCEEECCSSCC-----SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS-SCCCGGGBC
T ss_pred CHHHhcCCCCCCEEECCCCcC-----CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCC-CcCCccCcC
Confidence 366778889999999998887 45554333 45666666666655544 2355555555555555 3332 23
Q ss_pred ChhhhcCCCCCeeecccccccccCc----------------------hhhcCCCCCCccceEEeCCCCCcccCcccchhh
Q 048772 178 PQGMEKLMNLRHLIIMNHVYLEYMP----------------------RGIERLTGLRTLSEFVVGRTGGEHASKVCKLEA 235 (333)
Q Consensus 178 p~~~~~L~~L~~L~l~~~~~l~~~p----------------------~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~ 235 (333)
|..+.++++|++|++++|. +..+| ..++.+++|++|++.++.... .....
T Consensus 164 ~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~ 235 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-------VDNGS 235 (330)
T ss_dssp TTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-------ECTTT
T ss_pred hhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-------eChhh
Confidence 3445555555555555444 33333 345555555555555444332 11122
Q ss_pred hcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEecc
Q 048772 236 LKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDN 280 (333)
Q Consensus 236 L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 280 (333)
+..+++|+. |++.+.. ...++..+..+++|++|++++|.
T Consensus 236 ~~~l~~L~~-L~L~~N~-----l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 236 LANTPHLRE-LHLNNNK-----LVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp GGGSTTCCE-EECCSSC-----CSSCCTTTTTCSSCCEEECCSSC
T ss_pred ccCCCCCCE-EECCCCc-----CccCChhhccCCCcCEEECCCCc
Confidence 333444443 4444321 11334445556666666666554
No 43
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=5.7e-16 Score=135.30 Aligned_cols=179 Identities=18% Similarity=0.246 Sum_probs=137.5
Q ss_pred cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCChh-hhcCCCCC
Q 048772 111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQG-MEKLMNLR 188 (333)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L~ 188 (333)
..+.++++++.+ ..+|..+. +.++.|++++|.++.+|. .++++++|++|++++ +.+..+|.. +.++++|+
T Consensus 17 ~~~~l~~~~~~l-----~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~ 88 (270)
T 2o6q_A 17 NKNSVDCSSKKL-----TAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLE 88 (270)
T ss_dssp TTTEEECTTSCC-----SSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCC
T ss_pred CCCEEEccCCCC-----CccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCC
Confidence 478899999988 67776554 679999999999998885 789999999999999 778888876 47899999
Q ss_pred eeecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcc
Q 048772 189 HLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKE 267 (333)
Q Consensus 189 ~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 267 (333)
+|++++|. +..+|.. ++.+++|++|++.++.... .....+..+++|+. |++.+.. ........+..
T Consensus 89 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~-L~Ls~n~----l~~~~~~~~~~ 155 (270)
T 2o6q_A 89 TLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKS-------LPPRVFDSLTKLTY-LSLGYNE----LQSLPKGVFDK 155 (270)
T ss_dssp EEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCC-------CCTTTTTTCTTCCE-EECCSSC----CCCCCTTTTTT
T ss_pred EEECCCCc-CCcCCHhHcccccCCCEEECCCCccCe-------eCHHHhCcCcCCCE-EECCCCc----CCccCHhHccC
Confidence 99999998 7777754 7899999999998776554 22334566677776 7776632 22223345788
Q ss_pred cCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhh
Q 048772 268 KKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKE 326 (333)
Q Consensus 268 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~ 326 (333)
+++|+.|+++.|..... ....+.. +++|++|++++|.+.. +|.
T Consensus 156 l~~L~~L~L~~n~l~~~------------~~~~~~~---l~~L~~L~L~~N~l~~-~~~ 198 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRV------------PEGAFDK---LTELKTLKLDNNQLKR-VPE 198 (270)
T ss_dssp CTTCCEEECCSSCCSCC------------CTTTTTT---CTTCCEEECCSSCCSC-CCT
T ss_pred CcccceeEecCCcCcEe------------ChhHhcc---CCCcCEEECCCCcCCc-CCH
Confidence 99999999998853222 1223455 7899999999998887 665
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=6.9e-16 Score=148.02 Aligned_cols=195 Identities=16% Similarity=0.094 Sum_probs=110.0
Q ss_pred hhHhhhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccchh-hhccccCcEEeccCCCCCCc--CC
Q 048772 103 EDVFKQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELPET-CCELINLETLEINRCTRLKR--LP 178 (333)
Q Consensus 103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~--lp 178 (333)
+..|.++++|++|++++|.+ ..++ ..+..+++|++|++++|.++.+|.. ++++++|++|++++ +.+.. .|
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~ 116 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRI-----NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG-NPYQTLGVT 116 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT-CCCSSSCSS
T ss_pred hhhhhcCCcccEEECCCCCc-----CccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC-Ccccccchh
Confidence 44556666777777777766 3333 4566677777777777776666543 66777777777776 44543 34
Q ss_pred hhhhcCCCCCeeecccccccccCc-hhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCc
Q 048772 179 QGMEKLMNLRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANV 257 (333)
Q Consensus 179 ~~~~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~ 257 (333)
..++++++|++|++++|..+..+| ..++++++|++|++.++.... .....+..+++|+. |++.....
T Consensus 117 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~l~~l~~L~~-L~l~~n~~---- 184 (549)
T 2z81_A 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-------YQSQSLKSIRDIHH-LTLHLSES---- 184 (549)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-------ECTTTTTTCSEEEE-EEEECSBS----
T ss_pred hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc-------cChhhhhccccCce-EecccCcc----
Confidence 556667777777776665455555 346667777777766655432 23334455555554 55554221
Q ss_pred hhhhhh-cCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhH
Q 048772 258 DEAKHV-DLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWV 328 (333)
Q Consensus 258 ~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~ 328 (333)
...+. .+..+++|+.|+++.|...+..... ...... +++|+.|++.++......|..+
T Consensus 185 -~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~~~~---~~~L~~L~l~~n~l~~~~~~~l 243 (549)
T 2z81_A 185 -AFLLEIFADILSSVRYLELRDTNLARFQFSP---------LPVDEV---SSPMKKLAFRGSVLTDESFNEL 243 (549)
T ss_dssp -TTHHHHHHHSTTTBSEEEEESCBCTTCCCCC---------CSSCCC---CCCCCEEEEESCEEEHHHHHHH
T ss_pred -cccchhhHhhcccccEEEccCCccccccccc---------cchhhh---hhcccceeccccccchhHHHHH
Confidence 11111 1234677777777776533221100 001122 5678888888776654344444
No 45
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=5.2e-17 Score=146.19 Aligned_cols=164 Identities=16% Similarity=0.148 Sum_probs=75.9
Q ss_pred hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCC-cCc--ccchhhhccccCcEEeccCCCCCCc--
Q 048772 102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWL-RIK--ELPETCCELINLETLEINRCTRLKR-- 176 (333)
Q Consensus 102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~-~i~--~lp~~i~~L~~L~~L~l~~~~~~~~-- 176 (333)
++..+..+++|++|++++|.+. ...|..+..+++|++|++++| .++ .+|..+.++++|++|++++|..+..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~----~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 185 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLS----DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCC----HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccC----HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence 3444455555555555555441 233444555555555555555 344 2444455555555555555323432
Q ss_pred CChhhhcCC-CCCeeeccccc-cc--ccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccC
Q 048772 177 LPQGMEKLM-NLRHLIIMNHV-YL--EYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLG 252 (333)
Q Consensus 177 lp~~~~~L~-~L~~L~l~~~~-~l--~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~ 252 (333)
+|..+..++ +|++|++++|. .+ ..+|..++.+++|++|++.++.... ...+..+..+++|+. |++.+..
T Consensus 186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~------~~~~~~l~~l~~L~~-L~l~~~~ 258 (336)
T 2ast_B 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK------NDCFQEFFQLNYLQH-LSLSRCY 258 (336)
T ss_dssp HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC------GGGGGGGGGCTTCCE-EECTTCT
T ss_pred HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC------HHHHHHHhCCCCCCE-eeCCCCC
Confidence 344455555 55555555553 12 2334444555555555555444211 223334444455554 5554432
Q ss_pred CCCCchhhhhhcCcccCCCCceEEEec
Q 048772 253 DLANVDEAKHVDLKEKKNLDRLELWFD 279 (333)
Q Consensus 253 ~~~~~~~~~~~~l~~l~~L~~L~l~~~ 279 (333)
.+ .......++++++|+.|++++|
T Consensus 259 ~~---~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 259 DI---IPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TC---CGGGGGGGGGCTTCCEEECTTS
T ss_pred CC---CHHHHHHHhcCCCCCEEeccCc
Confidence 11 1122233445555555555533
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=145.65 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=89.5
Q ss_pred HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccchhhhccccCc
Q 048772 86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPETCCELINLE 164 (333)
Q Consensus 86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~ 164 (333)
.++.+.+.+... ....+..|..+++|++|++++|.+ ..+ |..++.+++|++|++++|.++.+|.. .+++|+
T Consensus 22 ~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 22 KTTILNISQNYI-SELWTSDILSLSKLRILIISHNRI-----QYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp TCSEEECCSSCC-CCCCHHHHTTCTTCCEEECCSSCC-----CEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred cccEEECCCCcc-cccChhhccccccccEEecCCCcc-----CCcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 444444444332 233456778888899999998887 444 66788888999999999888888876 788899
Q ss_pred EEeccCCCCCCc--CChhhhcCCCCCeeecccccccccCchhhcCCCCC--CccceEEeCC
Q 048772 165 TLEINRCTRLKR--LPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGL--RTLSEFVVGR 221 (333)
Q Consensus 165 ~L~l~~~~~~~~--lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L--~~L~~~~~~~ 221 (333)
+|++++ +.+.. +|..++++++|++|++++|. +.. ..++.+++| ++|++..+..
T Consensus 94 ~L~L~~-N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 94 HLDLSF-NAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp EEECCS-SCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred EEeccC-CccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccc
Confidence 999988 55654 57788888899998888876 333 235556666 6776666544
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.63 E-value=6.6e-16 Score=145.73 Aligned_cols=154 Identities=23% Similarity=0.262 Sum_probs=122.6
Q ss_pred ccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChh-hhcCCC
Q 048772 110 TCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQG-MEKLMN 186 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~ 186 (333)
+.+++|++++|.+ ..+ |..+..+++|++|++++|.++.+ |..++++++|++|++++ +.+..+|.. +.++++
T Consensus 32 ~~l~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGKNRI-----KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-NRLKLIPLGVFTGLSN 105 (477)
T ss_dssp TTCSEEECCSSCC-----CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCTTSSTTCTT
T ss_pred CCCcEEECCCCcc-----ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC-CcCCccCcccccCCCC
Confidence 5799999999998 555 46789999999999999999877 68899999999999999 778888865 789999
Q ss_pred CCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCc
Q 048772 187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLK 266 (333)
Q Consensus 187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~ 266 (333)
|++|++++|......|..++++++|++|++.++.... .....+..+++|+. |++.+.. ........+.
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~-L~l~~n~----l~~~~~~~l~ 173 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-------ISHRAFSGLNSLEQ-LTLEKCN----LTSIPTEALS 173 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-------ECTTSSTTCTTCCE-EEEESCC----CSSCCHHHHT
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccce-------eChhhccCCCCCCE-EECCCCc----CcccChhHhc
Confidence 9999999998444446679999999999998776543 22344566677776 7777632 2223344578
Q ss_pred ccCCCCceEEEeccC
Q 048772 267 EKKNLDRLELWFDNV 281 (333)
Q Consensus 267 ~l~~L~~L~l~~~~~ 281 (333)
.+++|+.|+++.|..
T Consensus 174 ~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 174 HLHGLIVLRLRHLNI 188 (477)
T ss_dssp TCTTCCEEEEESCCC
T ss_pred ccCCCcEEeCCCCcC
Confidence 899999999998854
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.63 E-value=8.8e-16 Score=147.29 Aligned_cols=179 Identities=18% Similarity=0.253 Sum_probs=134.5
Q ss_pred ccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCChh-hhcCCC
Q 048772 110 TCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQG-MEKLMN 186 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~ 186 (333)
+.|++|++++|.+ ..+ |..+..+++|++|++++|.++.+| ..++++++|++|++++ +.+..+|.. ++++++
T Consensus 26 ~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNKI-----TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD-NHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSCC-----CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCSCCHHHHTTCTT
T ss_pred CCccEEECcCCcc-----CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC-CccCccCHHHhccCCC
Confidence 6899999999988 444 567888999999999999988776 6789999999999998 667777665 899999
Q ss_pred CCeeecccccccc--cCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772 187 LRHLIIMNHVYLE--YMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD 264 (333)
Q Consensus 187 L~~L~l~~~~~l~--~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~ 264 (333)
|++|++++|. +. ..|..++++++|++|++.++.... ......+..+++|+. |++.+. ...+..+..
T Consensus 100 L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~------~~~~~~~~~l~~L~~-L~L~~n----~l~~~~~~~ 167 (549)
T 2z81_A 100 LKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFS------EIRRIDFAGLTSLNE-LEIKAL----SLRNYQSQS 167 (549)
T ss_dssp CCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC------EECTTTTTTCCEEEE-EEEEET----TCCEECTTT
T ss_pred CcEEECCCCc-ccccchhhhhhccCCccEEECCCCcccc------ccCHhhhhcccccCe-eeccCC----cccccChhh
Confidence 9999999987 55 346678999999999998876333 222345666777776 777763 233445677
Q ss_pred CcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhc-cCCCCCCCceeeEEeeecChh
Q 048772 265 LKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSV-RVCLLWDNCHPLKYSRYGIWI 322 (333)
Q Consensus 265 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~ 322 (333)
++.+++|++|+++++.. .. ++..+ .. +++|+.|++++|.+.+
T Consensus 168 l~~l~~L~~L~l~~n~~-----~~--------~~~~~~~~---l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSES-----AF--------LLEIFADI---LSSVRYLELRDTNLAR 210 (549)
T ss_dssp TTTCSEEEEEEEECSBS-----TT--------HHHHHHHS---TTTBSEEEEESCBCTT
T ss_pred hhccccCceEecccCcc-----cc--------cchhhHhh---cccccEEEccCCcccc
Confidence 88889999999987742 11 22222 34 6789999999887765
No 49
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=1.3e-15 Score=147.56 Aligned_cols=172 Identities=15% Similarity=0.180 Sum_probs=107.3
Q ss_pred hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCC
Q 048772 107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMN 186 (333)
Q Consensus 107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~ 186 (333)
..++.|+.|++++|.+ ..+| .+..+++|+.|+|++|.++.+|. ++.+++|+.|+|++ +.+..+| .+..|++
T Consensus 40 ~~L~~L~~L~l~~n~i-----~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~-N~l~~l~-~l~~l~~ 110 (605)
T 1m9s_A 40 NELNSIDQIIANNSDI-----KSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE-NKIKDLS-SLKDLKK 110 (605)
T ss_dssp HHHTTCCCCBCTTCCC-----CCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS-SCCCCCT-TSTTCTT
T ss_pred hcCCCCCEEECcCCCC-----CCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC-CCCCCCh-hhccCCC
Confidence 4567777777777776 5554 46777777777777777776665 67777777777777 5566665 5677777
Q ss_pred CCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCc
Q 048772 187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLK 266 (333)
Q Consensus 187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~ 266 (333)
|++|++++|. +..+| .++.|++|+.|++..+.... +..+..+++|+. |++....- .+. +. +.
T Consensus 111 L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~---------l~~l~~l~~L~~-L~Ls~N~l----~~~-~~-l~ 172 (605)
T 1m9s_A 111 LKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD---------ITVLSRLTKLDT-LSLEDNQI----SDI-VP-LA 172 (605)
T ss_dssp CCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCC---------CGGGGSCTTCSE-EECCSSCC----CCC-GG-GT
T ss_pred CCEEEecCCC-CCCCc-cccCCCccCEEECCCCccCC---------chhhcccCCCCE-EECcCCcC----CCc-hh-hc
Confidence 7777777776 55553 46777777777776665443 134555566665 66654221 111 11 66
Q ss_pred ccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChh
Q 048772 267 EKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWI 322 (333)
Q Consensus 267 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~ 322 (333)
.+++|+.|+|+.|.+.. + ..+.. +++|+.|+|++|.+..
T Consensus 173 ~l~~L~~L~Ls~N~i~~-------------l-~~l~~---l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISD-------------L-RALAG---LKNLDVLELFSQECLN 211 (605)
T ss_dssp TCTTCCEEECCSSCCCB-------------C-GGGTT---CTTCSEEECCSEEEEC
T ss_pred cCCCCCEEECcCCCCCC-------------C-hHHcc---CCCCCEEEccCCcCcC
Confidence 67777777777663211 1 23444 6677777777765544
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=7e-16 Score=149.72 Aligned_cols=109 Identities=19% Similarity=0.280 Sum_probs=94.7
Q ss_pred hcccccceEeeccccccccCCCcchH-hhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hhhcC
Q 048772 108 QFTCLRALRICGENVWEIGNSKIPKA-MKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GMEKL 184 (333)
Q Consensus 108 ~~~~L~~L~l~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L 184 (333)
.++.++.++++++.+ ..+|.. +..+++|++|++++|.++.+| ..++.+++|++|++++ +.+..+|. .++++
T Consensus 49 ~l~~l~~l~l~~~~l-----~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l 122 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM-----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNV 122 (597)
T ss_dssp GGCCCSEEEESSCEE-----SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTC
T ss_pred cCCCceEEEeeCCCC-----CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCC-CcCCCCCHHHHcCC
Confidence 468899999999998 777765 688999999999999999877 4899999999999999 56777765 47999
Q ss_pred CCCCeeecccccccccCchh-hcCCCCCCccceEEeCCCC
Q 048772 185 MNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTG 223 (333)
Q Consensus 185 ~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~ 223 (333)
++|++|++++|. +..+|.. ++.+++|++|++.++....
T Consensus 123 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 123 PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCC
Confidence 999999999998 7888877 5999999999998876554
No 51
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.62 E-value=2.7e-15 Score=143.03 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=93.5
Q ss_pred ccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChhhhcCCCC
Q 048772 110 TCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQGMEKLMNL 187 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L 187 (333)
+.|++|++++|.+ ..++ ..+..+++|++|++++|.++.+ |..++++++|++|++++ +.+..+|.. .+++|
T Consensus 21 ~~L~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~--~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNYI-----SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH-NKLVKISCH--PTVNL 92 (520)
T ss_dssp TTCSEEECCSSCC-----CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS-SCCCEEECC--CCCCC
T ss_pred ccccEEECCCCcc-----cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC-CceeecCcc--ccCCc
Confidence 7899999999998 5554 6799999999999999999977 67999999999999999 778899987 89999
Q ss_pred Ceeeccccccccc--CchhhcCCCCCCccceEEeCCCC
Q 048772 188 RHLIIMNHVYLEY--MPRGIERLTGLRTLSEFVVGRTG 223 (333)
Q Consensus 188 ~~L~l~~~~~l~~--~p~~i~~L~~L~~L~~~~~~~~~ 223 (333)
++|++++|. +.. +|..++++++|++|++.++....
T Consensus 93 ~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 93 KHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp SEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred cEEeccCCc-cccccchhhhccCCcceEEEecCcccch
Confidence 999999998 554 67889999999999999877543
No 52
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.62 E-value=3.2e-15 Score=135.06 Aligned_cols=105 Identities=21% Similarity=0.326 Sum_probs=54.9
Q ss_pred hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772 106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM 185 (333)
Q Consensus 106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~ 185 (333)
+..+++|++|++++|.+ ..+|. +..+++|++|++++|.++.+| .++++++|++|++++ +.+..+|. +..++
T Consensus 62 ~~~~~~L~~L~l~~n~i-----~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~-n~i~~~~~-~~~l~ 132 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQI-----TDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNE-DNISDISP-LANLT 132 (347)
T ss_dssp GGGCTTCCEEECCSSCC-----CCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTT-SCCCCCGG-GTTCT
T ss_pred hhhcCCccEEEccCCcc-----ccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcC-CcccCchh-hccCC
Confidence 34455555666655555 44443 555555555555555555544 355555555555555 44555544 55555
Q ss_pred CCCeeecccccccccCchhhcCCCCCCccceEEeC
Q 048772 186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVG 220 (333)
Q Consensus 186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~ 220 (333)
+|++|++++|.....+| .++.+++|++|++.++.
T Consensus 133 ~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 133 KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK 166 (347)
T ss_dssp TCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC
T ss_pred ceeEEECCCCCCccccc-chhhCCCCcEEEecCCC
Confidence 55555555554333332 25555555555554443
No 53
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.62 E-value=6.8e-16 Score=149.86 Aligned_cols=112 Identities=25% Similarity=0.339 Sum_probs=76.8
Q ss_pred hhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChh-
Q 048772 103 EDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQG- 180 (333)
Q Consensus 103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~- 180 (333)
+..|..+++|++|++++|.+ ..+|..+..+++|++|++++|.+..+ |..++++++|++|++++|.....+|..
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l-----~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHL-----SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCC-----SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred HHHhccccCCCEEeccCCcc-----CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 44567778888888888877 67777777788888888888877765 456777777777777774433355543
Q ss_pred hhcCCCCCeeecccccccccC---chhhcCCCCCCccceEEeC
Q 048772 181 MEKLMNLRHLIIMNHVYLEYM---PRGIERLTGLRTLSEFVVG 220 (333)
Q Consensus 181 ~~~L~~L~~L~l~~~~~l~~~---p~~i~~L~~L~~L~~~~~~ 220 (333)
++++++|++|++++|. +..+ |..++.+++|++|++.++.
T Consensus 346 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 346 LENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp TTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred hhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCc
Confidence 6677777777777766 3333 4456667777777665554
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.62 E-value=7.3e-16 Score=138.67 Aligned_cols=190 Identities=17% Similarity=0.139 Sum_probs=114.4
Q ss_pred hhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCC---c
Q 048772 101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLK---R 176 (333)
Q Consensus 101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~---~ 176 (333)
..+..+.++++|++|++++|.+ ..+|..+. ++|++|++++|.++.+|. .++++++|++|++++ +.+. .
T Consensus 93 ~~~~~~~~l~~L~~L~L~~n~l-----~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~ 164 (332)
T 2ft3_A 93 IHEKAFSPLRKLQKLYISKNHL-----VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG-NPLENSGF 164 (332)
T ss_dssp ECGGGSTTCTTCCEEECCSSCC-----CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS-CCCBGGGS
T ss_pred cCHhHhhCcCCCCEEECCCCcC-----CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCC-CccccCCC
Confidence 3466788899999999999998 66676554 788888888888887774 478888888888887 4443 3
Q ss_pred CChhhhcC--------------------CCCCeeecccccccccCc-hhhcCCCCCCccceEEeCCCCCcccCcccchhh
Q 048772 177 LPQGMEKL--------------------MNLRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRTGGEHASKVCKLEA 235 (333)
Q Consensus 177 lp~~~~~L--------------------~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~ 235 (333)
.|..+..+ ++|++|++++|. +..++ ..++.+++|++|++.++.... .....
T Consensus 165 ~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~l~~-------~~~~~ 236 (332)
T 2ft3_A 165 EPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRM-------IENGS 236 (332)
T ss_dssp CTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSCCCC-------CCTTG
T ss_pred CcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCc-------CChhH
Confidence 34444444 345555555554 33333 446666677777666555433 12223
Q ss_pred hcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEE
Q 048772 236 LKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKY 315 (333)
Q Consensus 236 L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l 315 (333)
+..++.|+. |++.+.. ...++..+..+++|+.|++++|....... . .+....+....++|+.|++
T Consensus 237 ~~~l~~L~~-L~L~~N~-----l~~lp~~l~~l~~L~~L~l~~N~l~~~~~-----~----~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 237 LSFLPTLRE-LHLDNNK-----LSRVPAGLPDLKLLQVVYLHTNNITKVGV-----N----DFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp GGGCTTCCE-EECCSSC-----CCBCCTTGGGCTTCCEEECCSSCCCBCCT-----T----SSSCSSCCSSSCCBSEEEC
T ss_pred hhCCCCCCE-EECCCCc-----CeecChhhhcCccCCEEECCCCCCCccCh-----h----HccccccccccccccceEe
Confidence 445555554 5555421 12445567777778888887775332211 1 1111111001356788888
Q ss_pred eeecCh
Q 048772 316 SRYGIW 321 (333)
Q Consensus 316 ~~~~~~ 321 (333)
.+|...
T Consensus 302 ~~N~~~ 307 (332)
T 2ft3_A 302 FNNPVP 307 (332)
T ss_dssp CSSSSC
T ss_pred ecCccc
Confidence 877654
No 55
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.61 E-value=3.1e-15 Score=140.87 Aligned_cols=146 Identities=21% Similarity=0.260 Sum_probs=103.3
Q ss_pred hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772 106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM 185 (333)
Q Consensus 106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~ 185 (333)
+..+++|++|++++|.+ ..+|. +..+++|++|++++|.+..+|. ++++++|++|++++ +.+..+|. +.+++
T Consensus 64 ~~~l~~L~~L~Ls~n~l-----~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~-n~l~~~~~-~~~l~ 134 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQL-----TDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN-NQITDIDP-LKNLT 134 (466)
T ss_dssp GGGCTTCCEEECCSSCC-----CCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG-GTTCT
T ss_pred hhhhcCCCEEECCCCcc-----CCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC-CCCCCChH-HcCCC
Confidence 56788999999999988 66665 8889999999999999888877 88999999999998 56788775 88899
Q ss_pred CCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772 186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL 265 (333)
Q Consensus 186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l 265 (333)
+|++|++++|. +..+| .++.+++|++|++.. .... +..+..+++|+. |++.+..- .. ...+
T Consensus 135 ~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~-~~~~---------~~~~~~l~~L~~-L~l~~n~l-~~-----~~~l 195 (466)
T 1o6v_A 135 NLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGN-QVTD---------LKPLANLTTLER-LDISSNKV-SD-----ISVL 195 (466)
T ss_dssp TCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEE-SCCC---------CGGGTTCTTCCE-EECCSSCC-CC-----CGGG
T ss_pred CCCEEECCCCc-cCCCh-hhccCCcccEeecCC-cccC---------chhhccCCCCCE-EECcCCcC-CC-----Chhh
Confidence 99999999887 66665 377888888887743 2111 122555555554 55554321 11 1224
Q ss_pred cccCCCCceEEEec
Q 048772 266 KEKKNLDRLELWFD 279 (333)
Q Consensus 266 ~~l~~L~~L~l~~~ 279 (333)
..+++|++|+++.|
T Consensus 196 ~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 196 AKLTNLESLIATNN 209 (466)
T ss_dssp GGCTTCSEEECCSS
T ss_pred ccCCCCCEEEecCC
Confidence 55555666655554
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=153.31 Aligned_cols=192 Identities=15% Similarity=0.103 Sum_probs=130.1
Q ss_pred cccccceEeeccccccccCCCc-chHhhcccccCeeeccCCc-Cccc-chhhhccccCcEEeccCCCCCCcC-ChhhhcC
Q 048772 109 FTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLR-IKEL-PETCCELINLETLEINRCTRLKRL-PQGMEKL 184 (333)
Q Consensus 109 ~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~-i~~l-p~~i~~L~~L~~L~l~~~~~~~~l-p~~~~~L 184 (333)
.+.+++|++++|.+ ..+ |..+.++++|++|++++|. +..+ |..++++++|++|++++ +.+..+ |..++++
T Consensus 23 p~~l~~LdLs~N~i-----~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~-N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 23 LNTTERLLLSFNYI-----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS-SKIYFLHPDAFQGL 96 (844)
T ss_dssp CTTCCEEEEESCCC-----CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT-CCCCEECTTSSCSC
T ss_pred CCCcCEEECCCCcC-----CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC-CcCcccCHhHccCC
Confidence 46789999999887 333 5678889999999999885 5566 67888999999999998 556654 7788899
Q ss_pred CCCCeeecccccccccCchh--hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhh
Q 048772 185 MNLRHLIIMNHVYLEYMPRG--IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKH 262 (333)
Q Consensus 185 ~~L~~L~l~~~~~l~~~p~~--i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~ 262 (333)
++|++|++++|.....+|.. ++++++|++|++..+.... ......++++++|+. |++.+.. ..+..+
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~------~~~~~~~~~L~~L~~-L~Ls~N~----i~~~~~ 165 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS------LYLHPSFGKLNSLKS-IDFSSNQ----IFLVCE 165 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC------CCCCGGGGTCSSCCE-EEEESSC----CCCCCS
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc------cccchhHhhCCCCCE-EECCCCc----CCeeCH
Confidence 99999999988743445655 8889999999988877654 222245667777776 7776632 222334
Q ss_pred hcCccc--CCCCceEEEeccCCCCCCCccchHHHHHHhhhccCC---CCCCCceeeEEeeecChhhhhhhHh
Q 048772 263 VDLKEK--KNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVC---LLWDNCHPLKYSRYGIWIVWKEWVM 329 (333)
Q Consensus 263 ~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~L~~L~l~~~~~~~~~p~w~~ 329 (333)
..+..+ ++|+.|+++.|...+.. +..+..+ .....|+.|++++|.....+|.++.
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~------------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRV------------SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCC------------CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred HHcccccCCccceEECCCCcccccc------------ccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence 445555 78888999877644321 1122220 0011488888888865443555554
No 57
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.60 E-value=1.4e-15 Score=149.58 Aligned_cols=132 Identities=17% Similarity=0.135 Sum_probs=98.3
Q ss_pred HHHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccC
Q 048772 85 TASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINL 163 (333)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L 163 (333)
..++.+.+.+.. .....+..|.+++.|++|++++|.+. ...|..++++++|++|++++|.++.+|. .++++++|
T Consensus 25 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTIS----KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSCCC----CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCccC----ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 344555554433 22334556788899999999998872 3346678889999999999998888886 58899999
Q ss_pred cEEeccCCCCCCcCC-hhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCC
Q 048772 164 ETLEINRCTRLKRLP-QGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRT 222 (333)
Q Consensus 164 ~~L~l~~~~~~~~lp-~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~ 222 (333)
++|++++ +.+..+| ..++++++|++|++++|......|..++++++|++|++..+...
T Consensus 100 ~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 100 TELHLMS-NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp SEEECCS-SCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred CEEECCC-CccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence 9999998 5677766 56888999999999988743444556888888998888766544
No 58
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.60 E-value=1.1e-15 Score=143.15 Aligned_cols=121 Identities=11% Similarity=0.021 Sum_probs=83.2
Q ss_pred CChhhhcCCCCCeeecccccccccC-chhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCC
Q 048772 177 LPQGMEKLMNLRHLIIMNHVYLEYM-PRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLA 255 (333)
Q Consensus 177 lp~~~~~L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~ 255 (333)
.|..++++++|++|++++|. +..+ |..++.+++|++|++.++.... .....+..++.|+. |++.+.
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~-L~Ls~N---- 357 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGS-------IDSRMFENLDKLEV-LDLSYN---- 357 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCE-------ECGGGGTTCTTCCE-EECCSS----
T ss_pred chhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCC-------cChhHhcCcccCCE-EECCCC----
Confidence 35567788888888888887 4444 5568888888888887766543 33445666777776 777763
Q ss_pred CchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhh
Q 048772 256 NVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWK 325 (333)
Q Consensus 256 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p 325 (333)
...+..+..+..+++|++|++++|...+. ....+.. +++|+.|++++|.+...+|
T Consensus 358 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~---l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 358 HIRALGDQSFLGLPNLKELALDTNQLKSV------------PDGIFDR---LTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCC------------CTTTTTT---CTTCCEEECCSSCBCCCTT
T ss_pred cccccChhhccccccccEEECCCCccccC------------CHhHhcc---CCcccEEEccCCCcccCCC
Confidence 23344466788889999999988753322 1123455 7889999999987754356
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=1.9e-16 Score=141.27 Aligned_cols=191 Identities=17% Similarity=0.132 Sum_probs=142.1
Q ss_pred ccceEeeccccccccCCCcchHhh-------cccccCeeeccCCcCc-ccchhh--hccccCcEEeccCCCCCCcCChhh
Q 048772 112 LRALRICGENVWEIGNSKIPKAMK-------NLIHLRFLKLSWLRIK-ELPETC--CELINLETLEINRCTRLKRLPQGM 181 (333)
Q Consensus 112 L~~L~l~~~~~~~~~~~~lp~~~~-------~l~~L~~L~l~~~~i~-~lp~~i--~~L~~L~~L~l~~~~~~~~lp~~~ 181 (333)
|+.|++++|.+.. ..+|..+. ++++|++|++++|.++ .+|..+ +.+++|++|++++ +.+..+|..+
T Consensus 65 L~~L~L~~n~l~~---~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~ 140 (312)
T 1wwl_A 65 IKSLSLKRLTVRA---ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN-VSWATRDAWL 140 (312)
T ss_dssp HHHCCCCEEEEEE---EECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEES-CBCSSSSSHH
T ss_pred HhhcccccccccC---CCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccC-CCCcchhHHH
Confidence 8899999988732 34666665 7999999999999988 788876 8999999999999 7788889888
Q ss_pred hcC-----CCCCeeecccccccccCc-hhhcCCCCCCccceEEeCCCCCcccCcccchhhh--cCcccccceeEEcccCC
Q 048772 182 EKL-----MNLRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRTGGEHASKVCKLEAL--KGMNHLRGLLKIRMLGD 253 (333)
Q Consensus 182 ~~L-----~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L--~~L~~L~~~L~~~~~~~ 253 (333)
+.+ ++|++|++++|. +..+| ..++++++|++|++.++.... ....+..+ ..+++|+. |++.+..-
T Consensus 141 ~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~~~~~l~~L~~-L~L~~N~l 213 (312)
T 1wwl_A 141 AELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELG-----ERGLISALCPLKFPTLQV-LALRNAGM 213 (312)
T ss_dssp HHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCH-----HHHHHHHSCTTSCTTCCE-EECTTSCC
T ss_pred HHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCc-----chHHHHHHHhccCCCCCE-EECCCCcC
Confidence 888 999999999998 66666 679999999999998776432 01123333 67788886 88876421
Q ss_pred CCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHh
Q 048772 254 LANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVM 329 (333)
Q Consensus 254 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~ 329 (333)
..........+..+++|+.|++++|...+... ...+.. +++|+.|++++|.+.. +|.++.
T Consensus 214 -~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------~~~~~~---l~~L~~L~Ls~N~l~~-ip~~~~ 273 (312)
T 1wwl_A 214 -ETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-----------APSCDW---PSQLNSLNLSFTGLKQ-VPKGLP 273 (312)
T ss_dssp -CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-----------CSCCCC---CTTCCEEECTTSCCSS-CCSSCC
T ss_pred -cchHHHHHHHHhcCCCCCEEECCCCcCCcccc-----------hhhhhh---cCCCCEEECCCCccCh-hhhhcc
Confidence 21112222344678999999999886433210 122333 6899999999999987 888764
No 60
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.60 E-value=9.7e-16 Score=148.80 Aligned_cols=113 Identities=19% Similarity=0.119 Sum_probs=61.9
Q ss_pred hhHhhhcccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCccc---chhhhccccCcEEeccCCCCCC-cC
Q 048772 103 EDVFKQFTCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKEL---PETCCELINLETLEINRCTRLK-RL 177 (333)
Q Consensus 103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l---p~~i~~L~~L~~L~l~~~~~~~-~l 177 (333)
+..+..+++|++|++++|.+. ..+|. .+..+++|++|++++|.+..+ |..++++++|++|++++ +.+. ..
T Consensus 318 ~~~~~~l~~L~~L~l~~n~~~----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~ 392 (606)
T 3t6q_A 318 QISASNFPSLTHLSIKGNTKR----LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY-NEPLSLK 392 (606)
T ss_dssp GGCGGGCTTCSEEECCSCSSC----CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCS-CSCEEEC
T ss_pred hhhhhccCcCCEEECCCCCcc----cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCC-CcCCcCC
Confidence 445666777777777777652 23333 256666666666666665544 44566666666666666 3333 23
Q ss_pred ChhhhcCCCCCeeecccccccccCchh-hcCCCCCCccceEEeC
Q 048772 178 PQGMEKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVG 220 (333)
Q Consensus 178 p~~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~ 220 (333)
|..++++++|++|++++|......|.. ++.+++|++|++.++.
T Consensus 393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 445555566666666555522222222 5555555555554443
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.60 E-value=4.5e-16 Score=149.89 Aligned_cols=130 Identities=22% Similarity=0.260 Sum_probs=102.4
Q ss_pred HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccc-hhhhccccC
Q 048772 86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELP-ETCCELINL 163 (333)
Q Consensus 86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L 163 (333)
.++.+.+.+... ....+..|.++++|++|++++|.+ ..++ ..+.++++|++|++++|.++.+| ..++++++|
T Consensus 29 ~l~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~i-----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 29 STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SCCEEECCSCCC-CEECTTTTTTCSSCCEEECTTCCC-----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred cccEEEccCCcc-CccChhHhhCCCCceEEECCCCcC-----CccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 344455544332 223355678899999999999988 5554 56888999999999999998776 688999999
Q ss_pred cEEeccCCCCCCcCCh-hhhcCCCCCeeecccccccc--cCchhhcCCCCCCccceEEeCCCC
Q 048772 164 ETLEINRCTRLKRLPQ-GMEKLMNLRHLIIMNHVYLE--YMPRGIERLTGLRTLSEFVVGRTG 223 (333)
Q Consensus 164 ~~L~l~~~~~~~~lp~-~~~~L~~L~~L~l~~~~~l~--~~p~~i~~L~~L~~L~~~~~~~~~ 223 (333)
++|++++ +.+..+|. .++++++|++|++++|. +. .+|..++++++|++|++.++....
T Consensus 103 ~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 103 QKLVAVE-TNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp CEEECTT-SCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred ccccccc-cccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccce
Confidence 9999999 67888775 58999999999999997 44 478889999999999987766543
No 62
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.60 E-value=4.8e-15 Score=133.93 Aligned_cols=177 Identities=18% Similarity=0.206 Sum_probs=91.7
Q ss_pred hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCCh------
Q 048772 106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQ------ 179 (333)
Q Consensus 106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~------ 179 (333)
+..+++|++|++++|... .. +..+..+++|++|++++|.+..++. ++.+++|++|++++ +.+..++.
T Consensus 128 ~~~l~~L~~L~l~~n~~~----~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~-n~l~~~~~~~~l~~ 200 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNL----SD-LSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNY-NQIEDISPLASLTS 200 (347)
T ss_dssp GTTCTTCCEEECTTCTTC----CC-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTT-SCCCCCGGGGGCTT
T ss_pred hccCCceeEEECCCCCCc----cc-ccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccC-CcccccccccCCCc
Confidence 566777777777777542 22 2336666666666666666665554 56666666666666 44555443
Q ss_pred ---------------hhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccc
Q 048772 180 ---------------GMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRG 244 (333)
Q Consensus 180 ---------------~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 244 (333)
.+..+++|++|++++|. +..+|. +..+++|++|++.++.... +..+..+++|+.
T Consensus 201 L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~---------~~~~~~l~~L~~ 269 (347)
T 4fmz_A 201 LHYFTAYVNQITDITPVANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQISD---------INAVKDLTKLKM 269 (347)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCC---------CGGGTTCTTCCE
T ss_pred cceeecccCCCCCCchhhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCccCC---------ChhHhcCCCcCE
Confidence 03444445555554444 344433 4455555555544443222 123344444444
Q ss_pred eeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChh
Q 048772 245 LLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWI 322 (333)
Q Consensus 245 ~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~ 322 (333)
|++.+..- .. ...+..+++|+.|++++|..... .++.+.. +++|+.|++++|.+..
T Consensus 270 -L~l~~n~l-~~-----~~~~~~l~~L~~L~L~~n~l~~~------------~~~~l~~---l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 270 -LNVGSNQI-SD-----ISVLNNLSQLNSLFLNNNQLGNE------------DMEVIGG---LTNLTTLFLSQNHITD 325 (347)
T ss_dssp -EECCSSCC-CC-----CGGGGGCTTCSEEECCSSCCCGG------------GHHHHHT---CTTCSEEECCSSSCCC
T ss_pred -EEccCCcc-CC-----ChhhcCCCCCCEEECcCCcCCCc------------ChhHhhc---cccCCEEEccCCcccc
Confidence 44443211 11 12345556666666665532111 2334455 6667777777776665
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=3.2e-16 Score=134.38 Aligned_cols=102 Identities=20% Similarity=0.288 Sum_probs=63.3
Q ss_pred cccceEeeccccccccCCCcch-HhhcccccCeeeccCCc-Ccccch-hhhccccCcEEeccCCCCCCcCCh-hhhcCCC
Q 048772 111 CLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLR-IKELPE-TCCELINLETLEINRCTRLKRLPQ-GMEKLMN 186 (333)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~-i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~ 186 (333)
.|++|++++|.+ ..+|. .+..+++|++|++++|. ++.+|. .++++++|++|++++|+.++.+|. .+.++++
T Consensus 32 ~l~~L~l~~n~l-----~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 32 STQTLKLIETHL-----RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp TCCEEEEESCCC-----SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred cccEEEEeCCcc-----eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 566666666666 44444 45666666777776665 666653 556666677777665455666553 4566666
Q ss_pred CCeeecccccccccCchhhcCCCCCC---ccceEEe
Q 048772 187 LRHLIIMNHVYLEYMPRGIERLTGLR---TLSEFVV 219 (333)
Q Consensus 187 L~~L~l~~~~~l~~~p~~i~~L~~L~---~L~~~~~ 219 (333)
|++|++++|. +..+|. ++.+++|+ +|++.++
T Consensus 107 L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 107 LKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp CCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESC
T ss_pred CCEEeCCCCC-Cccccc-cccccccccccEEECCCC
Confidence 6777666666 555665 56666665 6666555
No 64
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=7.4e-16 Score=129.21 Aligned_cols=101 Identities=26% Similarity=0.472 Sum_probs=48.0
Q ss_pred cccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccchh-hhccccCcEEeccCCCCCCcCChh-hhcCCCC
Q 048772 111 CLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELPET-CCELINLETLEINRCTRLKRLPQG-MEKLMNL 187 (333)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L 187 (333)
.|++|++++|.+ ..+|. .+..+++|++|++++|.++.+|.. ++.+++|++|++++ +.+..+|.. ++++++|
T Consensus 29 ~l~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 29 QTTYLDLETNSL-----KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST-NQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp TCSEEECCSSCC-----CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred CCcEEEcCCCcc-----CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC-CcCCccCHhHhcCccCC
Confidence 455555555554 33332 234455555555555555544432 34555555555555 344444433 3455555
Q ss_pred CeeecccccccccCchh-hcCCCCCCccceEE
Q 048772 188 RHLIIMNHVYLEYMPRG-IERLTGLRTLSEFV 218 (333)
Q Consensus 188 ~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~ 218 (333)
++|++++|. +..+|.. ++.+++|++|++.+
T Consensus 103 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 103 KELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCc-CcccCHhHhccCCcCCEEECCC
Confidence 555555554 3444332 34455555544443
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.60 E-value=6.3e-16 Score=148.87 Aligned_cols=190 Identities=13% Similarity=0.060 Sum_probs=131.9
Q ss_pred hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCC--hhhhcC
Q 048772 107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLP--QGMEKL 184 (333)
Q Consensus 107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~~~~L 184 (333)
..+++|++|++++|.+... ...|..+..+++|++|++++|.+..+|..++.+++|++|++++ +.+...+ ..+.++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFK--GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSL 420 (570)
T ss_dssp CBCTTCCEEECCSSCCBEE--EEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT-SEEESCTTSCTTTTC
T ss_pred ccCCCCCEEeCcCCccCcc--ccccccccccCccCEEECCCCccccccccccccCCCCEEEccC-CccccccchhhhhcC
Confidence 3566777777777776210 1125677888888888888888887776688888888888888 4455443 357788
Q ss_pred CCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772 185 MNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD 264 (333)
Q Consensus 185 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~ 264 (333)
++|++|++++|......|..++.+++|++|++.++.... ...+..+..+++|+. |++.+. ...+..+..
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~p~~~~~l~~L~~-L~l~~n----~l~~~~~~~ 489 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE------NFLPDIFTELRNLTF-LDLSQC----QLEQLSPTA 489 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG------GEECSCCTTCTTCCE-EECTTS----CCCEECTTT
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc------ccchhhhhcccCCCE-EECCCC----ccccCChhh
Confidence 888999988887445566678888888888887665431 123345666777776 777763 233445677
Q ss_pred CcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhh
Q 048772 265 LKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWK 325 (333)
Q Consensus 265 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p 325 (333)
+..+++|++|++++|...+. .+..+.. +++|+.|++++|.+...+|
T Consensus 490 ~~~l~~L~~L~l~~n~l~~~------------~~~~~~~---l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQLKSV------------PDGIFDR---LTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTTCTTCCEEECCSSCCSCC------------CTTTTTT---CTTCCEEECCSSCBCCCTT
T ss_pred hhcccCCCEEeCCCCcCCCC------------CHHHhhc---ccCCcEEEecCCcccCCCc
Confidence 88899999999998854322 2234556 7889999999887643244
No 66
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.60 E-value=2.5e-15 Score=144.74 Aligned_cols=108 Identities=16% Similarity=0.204 Sum_probs=59.7
Q ss_pred hhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCC--h
Q 048772 103 EDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLP--Q 179 (333)
Q Consensus 103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~ 179 (333)
+..|..+++|++|++++|.+ ..+ |..+..+++|++|++++|.++.+|.. .+++|++|++++ +.+..+| .
T Consensus 69 ~~~~~~l~~L~~L~Ls~N~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~-N~l~~l~~p~ 140 (562)
T 3a79_B 69 MPDISFLSELRVLRLSHNRI-----RSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSF-NDFDVLPVCK 140 (562)
T ss_dssp GGGTTTCTTCCEEECCSCCC-----CEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCS-SCCSBCCCCG
T ss_pred hhhhccCCCccEEECCCCCC-----CcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCC-CCccccCchH
Confidence 34555666666666666665 333 34456666666666666666666654 566666666666 4454433 4
Q ss_pred hhhcCCCCCeeecccccccccCchhhcCCCCC--CccceEEeCC
Q 048772 180 GMEKLMNLRHLIIMNHVYLEYMPRGIERLTGL--RTLSEFVVGR 221 (333)
Q Consensus 180 ~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L--~~L~~~~~~~ 221 (333)
.++++++|++|++++|. +.. ..++.+++| ++|++..+..
T Consensus 141 ~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 141 EFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp GGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred hhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccc
Confidence 56666666666666655 322 123334444 6666555543
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.58 E-value=1.1e-15 Score=136.66 Aligned_cols=182 Identities=13% Similarity=0.080 Sum_probs=99.5
Q ss_pred hHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhc
Q 048772 104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEK 183 (333)
Q Consensus 104 ~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~ 183 (333)
..+..+++|++|++++|.+ ..+++ +..+++|++|++++|.++.+| ..++|++|++++ +.+..+|.. .
T Consensus 52 ~~~~~l~~L~~L~Ls~n~l-----~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~-n~l~~~~~~--~ 118 (317)
T 3o53_A 52 ADLAPFTKLELLNLSSNVL-----YETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAAN-NNISRVSCS--R 118 (317)
T ss_dssp HHHTTCTTCCEEECTTSCC-----EEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECCS-SCCSEEEEC--C
T ss_pred HHhhCCCcCCEEECCCCcC-----Ccchh-hhhcCCCCEEECcCCcccccc----CCCCcCEEECCC-CccCCcCcc--c
Confidence 3444555555555555544 22222 444555555555555544443 124555555555 344444432 3
Q ss_pred CCCCCeeecccccccccCc-hhhcCCCCCCccceEEeCCCCCcccCcccchhhh-cCcccccceeEEcccCCCCCchhhh
Q 048772 184 LMNLRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRTGGEHASKVCKLEAL-KGMNHLRGLLKIRMLGDLANVDEAK 261 (333)
Q Consensus 184 L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L-~~L~~L~~~L~~~~~~~~~~~~~~~ 261 (333)
+++|++|++++|. +..++ ..++.+++|++|++.++.... ..+..+ ..++.|+. |++.+..- . ..
T Consensus 119 ~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~~l~~L~~-L~L~~N~l----~-~~ 184 (317)
T 3o53_A 119 GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDT-------VNFAELAASSDTLEH-LNLQYNFI----Y-DV 184 (317)
T ss_dssp CSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCE-------EEGGGGGGGTTTCCE-EECTTSCC----C-EE
T ss_pred cCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCc-------ccHHHHhhccCcCCE-EECCCCcC----c-cc
Confidence 5667777777776 44444 346777777777776655443 122222 24555665 66655221 1 11
Q ss_pred hhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhh
Q 048772 262 HVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMN 330 (333)
Q Consensus 262 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~ 330 (333)
.....+++|++|++++|... . ++..+.. +++|+.|++++|.+.. +|.++..
T Consensus 185 -~~~~~l~~L~~L~Ls~N~l~-----~--------l~~~~~~---l~~L~~L~L~~N~l~~-l~~~~~~ 235 (317)
T 3o53_A 185 -KGQVVFAKLKTLDLSSNKLA-----F--------MGPEFQS---AAGVTWISLRNNKLVL-IEKALRF 235 (317)
T ss_dssp -ECCCCCTTCCEEECCSSCCC-----E--------ECGGGGG---GTTCSEEECTTSCCCE-ECTTCCC
T ss_pred -ccccccccCCEEECCCCcCC-----c--------chhhhcc---cCcccEEECcCCcccc-hhhHhhc
Confidence 22334778888888877421 1 3334555 7789999999888887 7876643
No 68
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=4.7e-15 Score=123.30 Aligned_cols=150 Identities=18% Similarity=0.227 Sum_probs=112.4
Q ss_pred hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCc-CChhhhcCC
Q 048772 107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKR-LPQGMEKLM 185 (333)
Q Consensus 107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~-lp~~~~~L~ 185 (333)
..++.|+.|++++|.+ ..+| .+..+++|++|++++|.++.++ .+..+++|++|++++ +.+.. .|..++.++
T Consensus 41 ~~l~~L~~L~l~~n~i-----~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 41 AQMNSLTYITLANINV-----TDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMG-KDVTSDKIPNLSGLT 112 (197)
T ss_dssp HHHHTCCEEEEESSCC-----SCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEEC-TTCBGGGSCCCTTCT
T ss_pred hhcCCccEEeccCCCc-----cChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeEC-CccCcccChhhcCCC
Confidence 5678999999999998 7777 6889999999999999877665 688999999999999 55654 677899999
Q ss_pred CCCeeecccccccccCchhhcCCCCCCccceEEeC-CCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772 186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVG-RTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD 264 (333)
Q Consensus 186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~-~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~ 264 (333)
+|++|++++|......|..++.+++|++|++.++. ... +..+..+++|+. |++.+..- .. . ..
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~---------~~~l~~l~~L~~-L~l~~n~i-~~----~-~~ 176 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD---------IMPLKTLPELKS-LNIQFDGV-HD----Y-RG 176 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC---------CGGGGGCSSCCE-EECTTBCC-CC----C-TT
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc---------cHhhcCCCCCCE-EECCCCCC-cC----h-HH
Confidence 99999999998444567789999999999988775 332 124555666665 66655321 11 1 15
Q ss_pred CcccCCCCceEEEecc
Q 048772 265 LKEKKNLDRLELWFDN 280 (333)
Q Consensus 265 l~~l~~L~~L~l~~~~ 280 (333)
+..+++|++|++++|.
T Consensus 177 l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 177 IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGGCSSCCEEEECBC-
T ss_pred hccCCCCCEEEeeCcc
Confidence 6667777777777664
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=1.4e-15 Score=143.98 Aligned_cols=182 Identities=13% Similarity=0.096 Sum_probs=102.0
Q ss_pred hHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhc
Q 048772 104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEK 183 (333)
Q Consensus 104 ~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~ 183 (333)
..|..+++|++|++++|.+ ...++ ++.+++|++|++++|.++.+|. .++|++|++++ +.+..+|.. .
T Consensus 52 ~~~~~l~~L~~L~Ls~N~l-----~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~-N~l~~~~~~--~ 118 (487)
T 3oja_A 52 ADLAPFTKLELLNLSSNVL-----YETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN-NNISRVSCS--R 118 (487)
T ss_dssp GGGTTCTTCCEEECTTSCC-----EEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS-SCCCCEEEC--C
T ss_pred HHHhCCCCCCEEEeeCCCC-----CCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC-CcCCCCCcc--c
Confidence 3444555555555555554 22222 4445555555555555444442 14555555555 344444432 4
Q ss_pred CCCCCeeecccccccccC-chhhcCCCCCCccceEEeCCCCCcccCcccchhhhc-CcccccceeEEcccCCCCCchhhh
Q 048772 184 LMNLRHLIIMNHVYLEYM-PRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALK-GMNHLRGLLKIRMLGDLANVDEAK 261 (333)
Q Consensus 184 L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~-~L~~L~~~L~~~~~~~~~~~~~~~ 261 (333)
+++|++|++++|. +..+ |..++.+++|++|++.++.... ..+..+. .++.|+. |++.+..- .+ .
T Consensus 119 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~l~~~l~~L~~-L~Ls~N~l----~~-~ 184 (487)
T 3oja_A 119 GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDT-------VNFAELAASSDTLEH-LNLQYNFI----YD-V 184 (487)
T ss_dssp CSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCE-------EEGGGGGGGTTTCCE-EECTTSCC----CE-E
T ss_pred cCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCC-------cChHHHhhhCCcccE-EecCCCcc----cc-c
Confidence 5677777777776 4443 4457777777777776665443 2233333 4556665 66665321 11 1
Q ss_pred hhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhh
Q 048772 262 HVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMN 330 (333)
Q Consensus 262 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~ 330 (333)
..+..+++|+.|++++|...+ ++..+.. +++|+.|++++|.+.. +|.++..
T Consensus 185 -~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~---l~~L~~L~Ls~N~l~~-lp~~l~~ 235 (487)
T 3oja_A 185 -KGQVVFAKLKTLDLSSNKLAF-------------MGPEFQS---AAGVTWISLRNNKLVL-IEKALRF 235 (487)
T ss_dssp -ECCCCCTTCCEEECCSSCCCE-------------ECGGGGG---GTTCSEEECTTSCCCE-ECTTCCC
T ss_pred -cccccCCCCCEEECCCCCCCC-------------CCHhHcC---CCCccEEEecCCcCcc-cchhhcc
Confidence 234457788888888774221 3334555 7789999999888887 8887653
No 70
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.57 E-value=9.6e-15 Score=137.11 Aligned_cols=169 Identities=17% Similarity=0.144 Sum_probs=90.1
Q ss_pred hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772 106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM 185 (333)
Q Consensus 106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~ 185 (333)
+..++.|++|++++|.+ ..+| ++.+++|++|++++|.++.+| ++++++|++|++++ +.+..+| +++++
T Consensus 60 l~~l~~L~~L~Ls~n~l-----~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~-N~l~~l~--~~~l~ 127 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNI-----TTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT-NKLTKLD--VSQNP 127 (457)
T ss_dssp GGGCTTCSEEECCSSCC-----SCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS-SCCSCCC--CTTCT
T ss_pred hcccCCCCEEEccCCcC-----CeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC-CcCCeec--CCCCC
Confidence 44555555555555555 3333 455555555555555555543 55555555555555 3444444 55555
Q ss_pred CCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772 186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL 265 (333)
Q Consensus 186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l 265 (333)
+|++|++++|. +..+| ++.+++|++|++..+.... .. .+..++.|+. |++.+..- .+ ++ +
T Consensus 128 ~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~------~~---~~~~l~~L~~-L~ls~n~l----~~-l~--l 187 (457)
T 3bz5_A 128 LLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKIT------KL---DVTPQTQLTT-LDCSFNKI----TE-LD--V 187 (457)
T ss_dssp TCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCC------CC---CCTTCTTCCE-EECCSSCC----CC-CC--C
T ss_pred cCCEEECCCCc-cceec--cccCCcCCEEECCCCCccc------cc---ccccCCcCCE-EECCCCcc----ce-ec--c
Confidence 55555555555 44443 4555555555554443221 11 2334445554 55544211 11 11 5
Q ss_pred cccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhh
Q 048772 266 KEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWK 325 (333)
Q Consensus 266 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p 325 (333)
..+++|+.|++++|...+. .+.. +++|+.|++++|.+.+ +|
T Consensus 188 ~~l~~L~~L~l~~N~l~~~---------------~l~~---l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITKL---------------DLNQ---NIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC---------------CCTT---CTTCSEEECCSSCCSC-CC
T ss_pred ccCCCCCEEECcCCcCCee---------------cccc---CCCCCEEECcCCcccc-cC
Confidence 6667777777776642111 2344 7889999999998877 77
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=8.9e-16 Score=145.33 Aligned_cols=183 Identities=10% Similarity=0.032 Sum_probs=139.9
Q ss_pred hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcC-ChhhhcC
Q 048772 106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRL-PQGMEKL 184 (333)
Q Consensus 106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~l-p~~~~~L 184 (333)
+..+++|++|++++|.+ ..+|. .++|++|++++|.++.+|.. .+++|++|++++ +.+..+ |..++++
T Consensus 76 l~~l~~L~~L~Ls~N~l-----~~l~~----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~l 143 (487)
T 3oja_A 76 LESLSTLRTLDLNNNYV-----QELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCR 143 (487)
T ss_dssp CTTCTTCCEEECCSSEE-----EEEEE----CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCS-SCCCSGGGBCGGGG
T ss_pred cccCCCCCEEEecCCcC-----CCCCC----CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCC-CCCCCCCchhhcCC
Confidence 78899999999999998 55553 38999999999999988753 578999999999 666665 5678999
Q ss_pred CCCCeeecccccccccCchhhc-CCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhh
Q 048772 185 MNLRHLIIMNHVYLEYMPRGIE-RLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHV 263 (333)
Q Consensus 185 ~~L~~L~l~~~~~l~~~p~~i~-~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~ 263 (333)
++|++|++++|......|..+. .+++|++|++.++.... . .....++.|+. |++.+.. ....+.
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~------~---~~~~~l~~L~~-L~Ls~N~-----l~~~~~ 208 (487)
T 3oja_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD------V---KGQVVFAKLKT-LDLSSNK-----LAFMGP 208 (487)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE------E---ECCCCCTTCCE-EECCSSC-----CCEECG
T ss_pred CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc------c---cccccCCCCCE-EECCCCC-----CCCCCH
Confidence 9999999999984444566665 89999999998877654 1 22334677776 7777632 223455
Q ss_pred cCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecCh-hhhhhhHhhh
Q 048772 264 DLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIW-IVWKEWVMNF 331 (333)
Q Consensus 264 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~-~~~p~w~~~l 331 (333)
.+..+++|+.|++++|... . ++..+.. +++|+.|++++|.+. ..+|.|+..+
T Consensus 209 ~~~~l~~L~~L~Ls~N~l~-----~--------lp~~l~~---l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNKLV-----L--------IEKALRF---SQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp GGGGGTTCSEEECTTSCCC-----E--------ECTTCCC---CTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred hHcCCCCccEEEecCCcCc-----c--------cchhhcc---CCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 6888999999999988532 1 4445556 889999999999876 3378888653
No 72
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.57 E-value=2.4e-14 Score=134.77 Aligned_cols=147 Identities=18% Similarity=0.285 Sum_probs=120.4
Q ss_pred hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCC
Q 048772 107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMN 186 (333)
Q Consensus 107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~ 186 (333)
..++.++.|++.++.+ ..+| .+..+++|++|++++|.++.+|. ++++++|++|++++ +.+..+|. ++++++
T Consensus 43 ~~l~~l~~L~l~~~~i-----~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~-n~l~~~~~-~~~l~~ 113 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGI-----KSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNN-NQIADITP-LANLTN 113 (466)
T ss_dssp HHHHTCCEEECCSSCC-----CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG-GTTCTT
T ss_pred hHhccccEEecCCCCC-----ccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCC-CccccChh-hcCCCC
Confidence 3578899999999998 6776 48889999999999999999987 99999999999999 67888877 999999
Q ss_pred CCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCc
Q 048772 187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLK 266 (333)
Q Consensus 187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~ 266 (333)
|++|++++|. +..+|. ++++++|++|++.++.... +..+..+++|+. |.+.+ .... ...+.
T Consensus 114 L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~---------~~~~~~l~~L~~-L~l~~--~~~~-----~~~~~ 174 (466)
T 1o6v_A 114 LTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTISD---------ISALSGLTSLQQ-LSFGN--QVTD-----LKPLA 174 (466)
T ss_dssp CCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEECC---------CGGGTTCTTCSE-EEEEE--SCCC-----CGGGT
T ss_pred CCEEECCCCC-CCCChH-HcCCCCCCEEECCCCccCC---------ChhhccCCcccE-eecCC--cccC-----chhhc
Confidence 9999999998 777876 9999999999999887554 224666677775 66653 1111 22388
Q ss_pred ccCCCCceEEEeccC
Q 048772 267 EKKNLDRLELWFDNV 281 (333)
Q Consensus 267 ~l~~L~~L~l~~~~~ 281 (333)
++++|+.|++++|..
T Consensus 175 ~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 175 NLTTLERLDISSNKV 189 (466)
T ss_dssp TCTTCCEEECCSSCC
T ss_pred cCCCCCEEECcCCcC
Confidence 899999999998853
No 73
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=3.3e-15 Score=130.02 Aligned_cols=149 Identities=22% Similarity=0.231 Sum_probs=121.7
Q ss_pred HhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcC
Q 048772 105 VFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKL 184 (333)
Q Consensus 105 ~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L 184 (333)
.+..++.|++|++++|.+ ..+| .+..+++|++|++++|.++.+|. ++++++|++|++++ +.+..+|....
T Consensus 36 ~~~~l~~L~~L~l~~n~i-----~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~-N~l~~l~~~~~-- 105 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNI-----QSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR-NRLKNLNGIPS-- 105 (263)
T ss_dssp CHHHHTTCSEEECTTSCC-----CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS-SCCSCCTTCCC--
T ss_pred chhhcCcCcEEECcCCCc-----ccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC-CccCCcCcccc--
Confidence 357889999999999998 6777 68899999999999999999988 99999999999999 77888876433
Q ss_pred CCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772 185 MNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD 264 (333)
Q Consensus 185 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~ 264 (333)
++|++|++++|. +..+| .++.+++|++|++.++.... +..+..+++|+. |++.+.. ..+. ..
T Consensus 106 ~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~---------~~~l~~l~~L~~-L~L~~N~----i~~~--~~ 167 (263)
T 1xeu_A 106 ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKS---------IVMLGFLSKLEV-LDLHGNE----ITNT--GG 167 (263)
T ss_dssp SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCB---------CGGGGGCTTCCE-EECTTSC----CCBC--TT
T ss_pred CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCCC---------ChHHccCCCCCE-EECCCCc----Ccch--HH
Confidence 899999999998 77776 59999999999998776554 135666777776 7777632 1221 66
Q ss_pred CcccCCCCceEEEeccC
Q 048772 265 LKEKKNLDRLELWFDNV 281 (333)
Q Consensus 265 l~~l~~L~~L~l~~~~~ 281 (333)
+..+++|+.|++++|..
T Consensus 168 l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp STTCCCCCEEEEEEEEE
T ss_pred hccCCCCCEEeCCCCcc
Confidence 88899999999998854
No 74
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.56 E-value=3.6e-15 Score=150.34 Aligned_cols=131 Identities=20% Similarity=0.227 Sum_probs=93.4
Q ss_pred HHHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCccc-chhhhcccc
Q 048772 85 TASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKEL-PETCCELIN 162 (333)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~ 162 (333)
..++.+.+.+... ....+..|.++++|++|++++|... ..+ |..+.++++|++|++++|.+..+ |..++++++
T Consensus 24 ~~l~~LdLs~N~i-~~i~~~~~~~l~~L~~LdLs~n~~~----~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 24 NTTERLLLSFNYI-RTVTASSFPFLEQLQLLELGSQYTP----LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp TTCCEEEEESCCC-CEECSSSCSSCCSCSEEEECTTCCC----CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCcCEEECCCCcC-CccChhHCcccccCeEEeCCCCCCc----cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 4455555554332 2334566788888888888888542 444 56788888888888888888765 678888888
Q ss_pred CcEEeccCCCCCC-cCChh--hhcCCCCCeeecccccccccC-c-hhhcCCCCCCccceEEeCCC
Q 048772 163 LETLEINRCTRLK-RLPQG--MEKLMNLRHLIIMNHVYLEYM-P-RGIERLTGLRTLSEFVVGRT 222 (333)
Q Consensus 163 L~~L~l~~~~~~~-~lp~~--~~~L~~L~~L~l~~~~~l~~~-p-~~i~~L~~L~~L~~~~~~~~ 222 (333)
|++|++++| .+. .+|.. +++|++|++|++++|. +..+ | ..++++++|++|++.++...
T Consensus 99 L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 99 LFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred cCEeeCcCC-CCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCC
Confidence 888888884 444 35554 7888888888888887 4444 2 45888888888888776543
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.56 E-value=8.3e-15 Score=141.10 Aligned_cols=104 Identities=25% Similarity=0.317 Sum_probs=91.5
Q ss_pred ccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChhhhcCCCC
Q 048772 110 TCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQGMEKLMNL 187 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L 187 (333)
+.|++|++++|.+ ..+| ..+..+++|++|++++|.++.+ |..++++++|++|++++ +.+..+|.. .+++|
T Consensus 52 ~~L~~L~Ls~N~i-----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~--~l~~L 123 (562)
T 3a79_B 52 PRTKALSLSQNSI-----SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH-NRLQNISCC--PMASL 123 (562)
T ss_dssp TTCCEEECCSSCC-----CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT-SCCCEECSC--CCTTC
T ss_pred CCcCEEECCCCCc-----cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC-CcCCccCcc--ccccC
Confidence 7899999999998 5555 5789999999999999999977 57799999999999999 778899987 89999
Q ss_pred CeeecccccccccCc--hhhcCCCCCCccceEEeCCC
Q 048772 188 RHLIIMNHVYLEYMP--RGIERLTGLRTLSEFVVGRT 222 (333)
Q Consensus 188 ~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~ 222 (333)
++|++++|. +..+| ..++++++|++|++.++...
T Consensus 124 ~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 124 RHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp SEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CEEECCCCC-ccccCchHhhcccCcccEEecCCCccc
Confidence 999999998 66654 78999999999999887654
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=6.2e-16 Score=139.09 Aligned_cols=186 Identities=12% Similarity=0.041 Sum_probs=141.1
Q ss_pred hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCC--cCChhhh
Q 048772 106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLK--RLPQGME 182 (333)
Q Consensus 106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~--~lp~~~~ 182 (333)
+..+++|++|++++|.+. ...+|..+..+++|++|++++|.++ ..|..++++++|++|++++|..++ .+|..+.
T Consensus 89 ~~~~~~L~~L~L~~~~l~---~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~ 165 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIE---VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 165 (336)
T ss_dssp CCCCBCCCEEECTTCEEC---HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred hccCCCCCEEEccCCCcC---HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh
Confidence 346899999999999872 1227778899999999999999987 678889999999999999975676 3777789
Q ss_pred cCCCCCeeeccccccccc--CchhhcCCC-CCCccceEEeC--CCCCcccCcccchhhhcCcccccceeEEcccCCCCCc
Q 048772 183 KLMNLRHLIIMNHVYLEY--MPRGIERLT-GLRTLSEFVVG--RTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANV 257 (333)
Q Consensus 183 ~L~~L~~L~l~~~~~l~~--~p~~i~~L~-~L~~L~~~~~~--~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~ 257 (333)
++++|++|++++|..+.. +|..++.++ +|++|++.++. ... ......+..+++|+. |++.+... .
T Consensus 166 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~------~~l~~~~~~~~~L~~-L~l~~~~~---l 235 (336)
T 2ast_B 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK------SDLSTLVRRCPNLVH-LDLSDSVM---L 235 (336)
T ss_dssp HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH------HHHHHHHHHCTTCSE-EECTTCTT---C
T ss_pred cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH------HHHHHHHhhCCCCCE-EeCCCCCc---C
Confidence 999999999999933554 577788999 99999998773 221 223344566778887 88887542 2
Q ss_pred hhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeee
Q 048772 258 DEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRY 318 (333)
Q Consensus 258 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~ 318 (333)
.+..+..+..+++|++|++++|. .. ... .+..+.. +++|+.|++.||
T Consensus 236 ~~~~~~~l~~l~~L~~L~l~~~~----~~---~~~----~~~~l~~---~~~L~~L~l~~~ 282 (336)
T 2ast_B 236 KNDCFQEFFQLNYLQHLSLSRCY----DI---IPE----TLLELGE---IPTLKTLQVFGI 282 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTCT----TC---CGG----GGGGGGG---CTTCCEEECTTS
T ss_pred CHHHHHHHhCCCCCCEeeCCCCC----CC---CHH----HHHHHhc---CCCCCEEeccCc
Confidence 24456678889999999999773 11 111 3345666 889999999998
No 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.56 E-value=1.6e-15 Score=135.58 Aligned_cols=182 Identities=10% Similarity=0.060 Sum_probs=138.4
Q ss_pred hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCCh-hhhcC
Q 048772 106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQ-GMEKL 184 (333)
Q Consensus 106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L 184 (333)
+..+++|++|++++|.+ ..+| ..++|++|++++|.++.+|.. .+++|++|++++ +.+..++. .++.+
T Consensus 76 ~~~l~~L~~L~Ls~n~l-----~~l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~-N~l~~~~~~~~~~l 143 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYV-----QELL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCR 143 (317)
T ss_dssp ETTCTTCCEEECCSSEE-----EEEE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCS-SCCCSGGGBCTGGG
T ss_pred hhhcCCCCEEECcCCcc-----cccc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCC-CCCCCccchhhhcc
Confidence 78899999999999998 5554 348999999999999988753 478999999999 66777754 78899
Q ss_pred CCCCeeecccccccccC-chhh-cCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhh
Q 048772 185 MNLRHLIIMNHVYLEYM-PRGI-ERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKH 262 (333)
Q Consensus 185 ~~L~~L~l~~~~~l~~~-p~~i-~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~ 262 (333)
++|++|++++|. +..+ |..+ +.+++|++|++.++.... . .....+++|+. |++.+.. ....+
T Consensus 144 ~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~------~---~~~~~l~~L~~-L~Ls~N~-----l~~l~ 207 (317)
T 3o53_A 144 SRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD------V---KGQVVFAKLKT-LDLSSNK-----LAFMG 207 (317)
T ss_dssp SSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE------E---ECCCCCTTCCE-EECCSSC-----CCEEC
T ss_pred CCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCcc------c---ccccccccCCE-EECCCCc-----CCcch
Confidence 999999999998 5554 4455 579999999998776554 1 22234667776 7776532 12344
Q ss_pred hcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecCh-hhhhhhHhhh
Q 048772 263 VDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIW-IVWKEWVMNF 331 (333)
Q Consensus 263 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~-~~~p~w~~~l 331 (333)
..+..+++|+.|++++|... . ++..+.. +++|+.|++++|.+. ..+|.|+..+
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~-----~--------l~~~~~~---l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLV-----L--------IEKALRF---SQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCC-----E--------ECTTCCC---CTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred hhhcccCcccEEECcCCccc-----c--------hhhHhhc---CCCCCEEEccCCCccCcCHHHHHhcc
Confidence 55888999999999988422 1 4455666 889999999999886 4378888754
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=3.6e-16 Score=143.62 Aligned_cols=210 Identities=17% Similarity=0.084 Sum_probs=141.4
Q ss_pred hhhHhhhcccccceEeeccccccccCCCcchHh-------hcccccCeeeccCCcCcc-----cchhhhccccCcEEecc
Q 048772 102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAM-------KNLIHLRFLKLSWLRIKE-----LPETCCELINLETLEIN 169 (333)
Q Consensus 102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~-------~~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~ 169 (333)
+...+..+++|++|++++|.+-.+. ..+|..+ ..+++|++|++++|.++. +|..+.++++|++|+++
T Consensus 52 l~~~l~~~~~L~~L~Ls~~~~~~l~-~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 130 (386)
T 2ca6_A 52 LSENIASKKDLEIAEFSDIFTGRVK-DEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 130 (386)
T ss_dssp HHHTTTTCTTCCEEECCSCCTTSCG-GGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHhCCCccEEeCcccccCccc-cchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECc
Confidence 3445678899999999987552111 2345444 678999999999999875 78888999999999999
Q ss_pred CCCCCC-----cCChhhhcC---------CCCCeeeccccccc-ccCc---hhhcCCCCCCccceEEeCCCCCcccCccc
Q 048772 170 RCTRLK-----RLPQGMEKL---------MNLRHLIIMNHVYL-EYMP---RGIERLTGLRTLSEFVVGRTGGEHASKVC 231 (333)
Q Consensus 170 ~~~~~~-----~lp~~~~~L---------~~L~~L~l~~~~~l-~~~p---~~i~~L~~L~~L~~~~~~~~~~~~~~~~~ 231 (333)
+ +.+. .++..+..+ ++|++|++++|... ..+| ..+..+++|++|++.++..... ....
T Consensus 131 ~-n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~---g~~~ 206 (386)
T 2ca6_A 131 N-NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE---GIEH 206 (386)
T ss_dssp S-SCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH---HHHH
T ss_pred C-CCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh---HHHH
Confidence 8 4454 234445555 89999999998722 2444 4677889999999887765420 0001
Q ss_pred chh-hhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhc--cCCCCCC
Q 048772 232 KLE-ALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSV--RVCLLWD 308 (333)
Q Consensus 232 ~~~-~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~ 308 (333)
.+. .+..+++|+. |++.+..-.......++..+..+++|++|+|++|.+ +. .....++..+ .+ ++
T Consensus 207 l~~~~l~~~~~L~~-L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i-----~~---~~~~~l~~~l~~~~---~~ 274 (386)
T 2ca6_A 207 LLLEGLAYCQELKV-LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL-----SA---RGAAAVVDAFSKLE---NI 274 (386)
T ss_dssp HHHTTGGGCTTCCE-EECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC-----CH---HHHHHHHHHHHTCS---SC
T ss_pred HHHHHhhcCCCccE-EECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC-----ch---hhHHHHHHHHhhcc---CC
Confidence 223 5667777886 877763211111255677788899999999987742 11 1111134444 44 67
Q ss_pred CceeeEEeeecChh----hhhhhH
Q 048772 309 NCHPLKYSRYGIWI----VWKEWV 328 (333)
Q Consensus 309 ~L~~L~l~~~~~~~----~~p~w~ 328 (333)
+|++|++++|.+.. .+|.++
T Consensus 275 ~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 275 GLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp CCCEEECCSSCCBHHHHHHHHHHH
T ss_pred CeEEEECcCCcCCHHHHHHHHHHH
Confidence 89999999998765 377776
No 79
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.55 E-value=1.2e-14 Score=136.37 Aligned_cols=169 Identities=17% Similarity=0.098 Sum_probs=128.0
Q ss_pred hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772 106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM 185 (333)
Q Consensus 106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~ 185 (333)
+..+++|++|++++|.+ ..+| ++.+++|++|++++|.++.+| ++++++|++|++++ +.+..+| +++++
T Consensus 81 ~~~l~~L~~L~Ls~N~l-----~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~-N~l~~l~--l~~l~ 148 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKL-----TNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCAR-NTLTEID--VSHNT 148 (457)
T ss_dssp CTTCTTCSEEECCSSCC-----SCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTT-SCCSCCC--CTTCT
T ss_pred cccCCCCCEEECcCCCC-----ceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCC-Cccceec--cccCC
Confidence 67788999999999988 5555 888999999999999988886 88999999999998 6677775 78899
Q ss_pred CCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772 186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL 265 (333)
Q Consensus 186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l 265 (333)
+|++|++++|..+..+ .++.+++|++|++..+.... .. +..++.|+. |++.+..- .+ . .+
T Consensus 149 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-------l~---l~~l~~L~~-L~l~~N~l----~~-~--~l 208 (457)
T 3bz5_A 149 QLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-------LD---VSQNKLLNR-LNCDTNNI----TK-L--DL 208 (457)
T ss_dssp TCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-------CC---CTTCTTCCE-EECCSSCC----SC-C--CC
T ss_pred cCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-------ec---cccCCCCCE-EECcCCcC----Ce-e--cc
Confidence 9999999998656666 37888999999988776554 11 455566665 66655221 11 1 47
Q ss_pred cccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhh
Q 048772 266 KEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWK 325 (333)
Q Consensus 266 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p 325 (333)
+.+++|+.|++++|...+ ++ +.. +++|+.|++++|.+.+ +|
T Consensus 209 ~~l~~L~~L~Ls~N~l~~-------------ip--~~~---l~~L~~L~l~~N~l~~-~~ 249 (457)
T 3bz5_A 209 NQNIQLTFLDCSSNKLTE-------------ID--VTP---LTQLTYFDCSVNPLTE-LD 249 (457)
T ss_dssp TTCTTCSEEECCSSCCSC-------------CC--CTT---CTTCSEEECCSSCCSC-CC
T ss_pred ccCCCCCEEECcCCcccc-------------cC--ccc---cCCCCEEEeeCCcCCC-cC
Confidence 788999999998875322 11 344 7889999999988876 54
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=1.1e-15 Score=140.39 Aligned_cols=202 Identities=15% Similarity=0.112 Sum_probs=141.2
Q ss_pred hHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-----ccchhhhcc---------ccCcEEecc
Q 048772 104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-----ELPETCCEL---------INLETLEIN 169 (333)
Q Consensus 104 ~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~L---------~~L~~L~l~ 169 (333)
..+..+++|++|++++|.+...+...+|..+..+++|++|++++|.++ .++..+..+ ++|++|+++
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 335788999999999999832111137888999999999999999986 244445555 899999999
Q ss_pred CCCCCC--cCC---hhhhcCCCCCeeecccccccc------cCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcC
Q 048772 170 RCTRLK--RLP---QGMEKLMNLRHLIIMNHVYLE------YMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKG 238 (333)
Q Consensus 170 ~~~~~~--~lp---~~~~~L~~L~~L~l~~~~~l~------~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~ 238 (333)
+ +.+. .+| ..+..+++|++|++++|. +. .+|..+..+++|++|++.++.....+ ....+..+..
T Consensus 168 ~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---~~~l~~~l~~ 242 (386)
T 2ca6_A 168 R-NRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---SSALAIALKS 242 (386)
T ss_dssp S-SCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---HHHHHHHGGG
T ss_pred C-CCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---HHHHHHHHcc
Confidence 9 5564 455 467889999999999997 55 23447889999999999877653200 0123445677
Q ss_pred cccccceeEEcccCCCCCchhhhhhcCc--ccCCCCceEEEeccCCCCCCCccchHHHHHHhhhc-cCCCCCCCceeeEE
Q 048772 239 MNHLRGLLKIRMLGDLANVDEAKHVDLK--EKKNLDRLELWFDNVGMPDENEENDEAITKIAKSV-RVCLLWDNCHPLKY 315 (333)
Q Consensus 239 L~~L~~~L~~~~~~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~L~~L~l 315 (333)
++.|+. |++.+..-.......++..+. .+++|++|+|++|.+. ..-+..++..+ .. +++|++|++
T Consensus 243 ~~~L~~-L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~--------~~g~~~l~~~l~~~---l~~L~~L~l 310 (386)
T 2ca6_A 243 WPNLRE-LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE--------LDAVRTLKTVIDEK---MPDLLFLEL 310 (386)
T ss_dssp CTTCCE-EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB--------HHHHHHHHHHHHHH---CTTCCEEEC
T ss_pred CCCcCE-EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC--------HHHHHHHHHHHHhc---CCCceEEEc
Confidence 788887 888774321112223455663 4899999999988421 11122255555 44 688999999
Q ss_pred eeecChh
Q 048772 316 SRYGIWI 322 (333)
Q Consensus 316 ~~~~~~~ 322 (333)
++|.+..
T Consensus 311 ~~N~l~~ 317 (386)
T 2ca6_A 311 NGNRFSE 317 (386)
T ss_dssp TTSBSCT
T ss_pred cCCcCCc
Confidence 9998776
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=2.3e-14 Score=123.69 Aligned_cols=175 Identities=15% Similarity=0.154 Sum_probs=109.6
Q ss_pred cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hhhcCCCCC
Q 048772 111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GMEKLMNLR 188 (333)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~ 188 (333)
..++++++++.+ ..+|..+. +.++.|++++|.++.++ ..++++++|++|++++ +.+..++. .+.++++|+
T Consensus 15 ~~~~l~~~~~~l-----~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 15 GKKEVDCQGKSL-----DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELG 86 (251)
T ss_dssp GGTEEECTTCCC-----SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCC
T ss_pred CCeEEecCCCCc-----cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCC-CcCCccCHhHhccCCcCC
Confidence 456677777776 66665544 46778888888777665 4577778888888887 55665544 467777888
Q ss_pred eeecccccccccCch-hhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcc
Q 048772 189 HLIIMNHVYLEYMPR-GIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKE 267 (333)
Q Consensus 189 ~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 267 (333)
+|++++|. +..+|. .++.+++|++|++.++.... .....+..++.|+. |++.+. ......+..+..
T Consensus 87 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~-L~Ls~N----~l~~~~~~~~~~ 153 (251)
T 3m19_A 87 TLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKS-------LPSGVFDRLTKLKE-LRLNTN----QLQSIPAGAFDK 153 (251)
T ss_dssp EEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCE-EECCSS----CCCCCCTTTTTT
T ss_pred EEECCCCc-ccccChhHhcccCCCCEEEcCCCcCCC-------cChhHhccCCcccE-EECcCC----cCCccCHHHcCc
Confidence 88887777 556654 36777788888777665443 11222344555554 555542 122222335667
Q ss_pred cCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecCh
Q 048772 268 KKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIW 321 (333)
Q Consensus 268 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~ 321 (333)
+++|++|+++.|...+. ....+.. +++|+.|++.+|.+.
T Consensus 154 l~~L~~L~L~~N~l~~~------------~~~~~~~---l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 154 LTNLQTLSLSTNQLQSV------------PHGAFDR---LGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTCCEEECCSSCCSCC------------CTTTTTT---CTTCCEEECCSCCBC
T ss_pred CcCCCEEECCCCcCCcc------------CHHHHhC---CCCCCEEEeeCCcee
Confidence 77788888877753322 1224455 677888888776553
No 82
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=3e-14 Score=123.90 Aligned_cols=105 Identities=25% Similarity=0.285 Sum_probs=60.1
Q ss_pred hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772 106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM 185 (333)
Q Consensus 106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~ 185 (333)
+..+++|++|++++|.+ ..+|. +..+++|++|++++|.++.+|.... .+|++|++++ +.+..+| .+++++
T Consensus 59 l~~l~~L~~L~L~~N~i-----~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~-N~l~~~~-~l~~l~ 128 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQI-----SDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDN-NELRDTD-SLIHLK 128 (263)
T ss_dssp GGGCTTCCEEECCSSCC-----CCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCS-SCCSBSG-GGTTCT
T ss_pred HhhCCCCCEEECCCCcc-----CCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccC-CccCCCh-hhcCcc
Confidence 45556666666666665 44444 5566666666666666665554322 5666666666 4455554 355666
Q ss_pred CCCeeecccccccccCchhhcCCCCCCccceEEeCCC
Q 048772 186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRT 222 (333)
Q Consensus 186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~ 222 (333)
+|++|++++|. +..+| .++.+++|++|++.++...
T Consensus 129 ~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 129 NLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp TCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCC
T ss_pred cccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCc
Confidence 66666666665 45554 4556666666665555443
No 83
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=1.6e-14 Score=120.00 Aligned_cols=156 Identities=18% Similarity=0.201 Sum_probs=121.4
Q ss_pred hhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhcCCCCCCc
Q 048772 134 MKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRT 213 (333)
Q Consensus 134 ~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~ 213 (333)
...+++|++|++++|.++.+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......|..++.+++|++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 477899999999999999999 7999999999999995 676665 7899999999999999843446778999999999
Q ss_pred cceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHH
Q 048772 214 LSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEA 293 (333)
Q Consensus 214 L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 293 (333)
|++.++.... ..+..+..+++|+. |++.+...+.. . ..+..+++|+.|++++|.+..
T Consensus 117 L~Ls~n~i~~-------~~~~~l~~l~~L~~-L~L~~n~~i~~----~-~~l~~l~~L~~L~l~~n~i~~---------- 173 (197)
T 4ezg_A 117 LDISHSAHDD-------SILTKINTLPKVNS-IDLSYNGAITD----I-MPLKTLPELKSLNIQFDGVHD---------- 173 (197)
T ss_dssp EECCSSBCBG-------GGHHHHTTCSSCCE-EECCSCTBCCC----C-GGGGGCSSCCEEECTTBCCCC----------
T ss_pred EEecCCccCc-------HhHHHHhhCCCCCE-EEccCCCCccc----c-HhhcCCCCCCEEECCCCCCcC----------
Confidence 9998876543 34667788888887 88887542222 2 268889999999999885322
Q ss_pred HHHHhhhccCCCCCCCceeeEEeeecChh
Q 048772 294 ITKIAKSVRVCLLWDNCHPLKYSRYGIWI 322 (333)
Q Consensus 294 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~ 322 (333)
+ ..+.. +++|++|++++|.+.+
T Consensus 174 ---~-~~l~~---l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 174 ---Y-RGIED---FPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ---C-TTGGG---CSSCCEEEECBC----
T ss_pred ---h-HHhcc---CCCCCEEEeeCcccCC
Confidence 1 14455 7899999999987643
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=4.3e-15 Score=127.28 Aligned_cols=196 Identities=15% Similarity=0.169 Sum_probs=140.3
Q ss_pred HHhhhhHhcCCccchhhhhHhhhcccccceEeeccc-cccccCCCcch-HhhcccccCeeeccC-CcCcccc-hhhhccc
Q 048772 86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGEN-VWEIGNSKIPK-AMKNLIHLRFLKLSW-LRIKELP-ETCCELI 161 (333)
Q Consensus 86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~lp~-~~~~l~~L~~L~l~~-~~i~~lp-~~i~~L~ 161 (333)
..+.+.+.+.. .....+..|..+++|++|++++|. + ..+|. .+..+++|++|++++ |.++.+| ..+.+++
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l-----~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTL-----QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSC-----CEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCc-----ceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 34444444432 223334577889999999999997 7 56665 678999999999998 8999888 5688999
Q ss_pred cCcEEeccCCCCCCcCChhhhcCCCCC---eeecccccccccCchh-hcCCCCCC-ccceEEeCCCCCcccCcccchhhh
Q 048772 162 NLETLEINRCTRLKRLPQGMEKLMNLR---HLIIMNHVYLEYMPRG-IERLTGLR-TLSEFVVGRTGGEHASKVCKLEAL 236 (333)
Q Consensus 162 ~L~~L~l~~~~~~~~lp~~~~~L~~L~---~L~l~~~~~l~~~p~~-i~~L~~L~-~L~~~~~~~~~~~~~~~~~~~~~L 236 (333)
+|++|++++ +.+..+|. ++.+++|+ +|++++|..+..+|.. ++.+++|+ +|++.++.... .+.. .+
T Consensus 106 ~L~~L~l~~-n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-----i~~~--~~ 176 (239)
T 2xwt_C 106 LLKFLGIFN-TGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-----VQGY--AF 176 (239)
T ss_dssp TCCEEEEEE-ECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-----ECTT--TT
T ss_pred CCCEEeCCC-CCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-----cCHh--hc
Confidence 999999999 77888997 88888888 9999999337888765 89999999 99987766543 1211 12
Q ss_pred cCcccccceeEEcccCCCCCchhhhhhcCccc-CCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEE
Q 048772 237 KGMNHLRGLLKIRMLGDLANVDEAKHVDLKEK-KNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKY 315 (333)
Q Consensus 237 ~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l 315 (333)
.. +.|+. |++.+.+.+ ....+..+..+ ++|+.|+++.|.... ++.. . +++|+.|++
T Consensus 177 ~~-~~L~~-L~L~~n~~l---~~i~~~~~~~l~~~L~~L~l~~N~l~~-------------l~~~--~---~~~L~~L~l 233 (239)
T 2xwt_C 177 NG-TKLDA-VYLNKNKYL---TVIDKDAFGGVYSGPSLLDVSQTSVTA-------------LPSK--G---LEHLKELIA 233 (239)
T ss_dssp TT-CEEEE-EECTTCTTC---CEECTTTTTTCSBCCSEEECTTCCCCC-------------CCCT--T---CTTCSEEEC
T ss_pred CC-CCCCE-EEcCCCCCc---ccCCHHHhhccccCCcEEECCCCcccc-------------CChh--H---hccCceeec
Confidence 22 56776 777663222 22234567778 999999999774321 1111 2 678999998
Q ss_pred eeec
Q 048772 316 SRYG 319 (333)
Q Consensus 316 ~~~~ 319 (333)
.++.
T Consensus 234 ~~~~ 237 (239)
T 2xwt_C 234 RNTW 237 (239)
T ss_dssp TTC-
T ss_pred cCcc
Confidence 7653
No 85
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.53 E-value=1.4e-14 Score=142.52 Aligned_cols=154 Identities=21% Similarity=0.305 Sum_probs=118.1
Q ss_pred ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCCh-hhhcCCC
Q 048772 110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQ-GMEKLMN 186 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~ 186 (333)
+.+++|++++|.+ ..+|. .+.++++|++|++++|.++.+ |..++++++|++|++++ +.+..+|. .|+++++
T Consensus 25 ~~l~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHNQL-----RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH-NELSQLSDKTFAFCTN 98 (680)
T ss_dssp TTCSEEECCSSCC-----CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred CCCcEEECCCCCC-----CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC-CccCccChhhhccCCC
Confidence 6899999999998 55554 589999999999999998866 57899999999999999 67889987 5999999
Q ss_pred CCeeecccccccccCc-hhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772 187 LRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL 265 (333)
Q Consensus 187 L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l 265 (333)
|++|++++|. +..+| ..++++++|++|++.++.... ..+..+.++++|+. |++.+..- .+..+..+
T Consensus 99 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~-L~L~~n~l----~~~~~~~~ 165 (680)
T 1ziw_A 99 LTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSS-------TKLGTQVQLENLQE-LLLSNNKI----QALKSEEL 165 (680)
T ss_dssp CSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSC-------CCCCSSSCCTTCCE-EECCSSCC----CCBCHHHH
T ss_pred CCEEECCCCc-cCccChhHccccCCCCEEECCCCcccc-------cCchhhcccccCCE-EEccCCcc----cccCHHHh
Confidence 9999999998 66776 569999999999998876554 23334556777776 77665321 11112222
Q ss_pred --cccCCCCceEEEeccCC
Q 048772 266 --KEKKNLDRLELWFDNVG 282 (333)
Q Consensus 266 --~~l~~L~~L~l~~~~~~ 282 (333)
..+++|+.|++++|...
T Consensus 166 ~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp GGGTTCEESEEECTTCCCC
T ss_pred hccccccccEEECCCCccc
Confidence 23467888888776543
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=9.1e-14 Score=122.70 Aligned_cols=149 Identities=25% Similarity=0.324 Sum_probs=122.8
Q ss_pred hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772 106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM 185 (333)
Q Consensus 106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~ 185 (333)
+..+++|++|++++|.+ ..++. +..+++|++|++++|.++.+|. ++.+++|++|++++ +.+..+| .+..++
T Consensus 64 ~~~l~~L~~L~L~~n~l-----~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~-n~i~~~~-~l~~l~ 134 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKL-----TDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH-NGISDIN-GLVHLP 134 (291)
T ss_dssp GGGCTTCCEEECCSSCC-----CCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT-SCCCCCG-GGGGCT
T ss_pred HhcCCCCCEEEccCCcc-----CCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC-CcCCCCh-hhcCCC
Confidence 67889999999999998 66766 9999999999999999998775 99999999999999 6788875 689999
Q ss_pred CCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772 186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL 265 (333)
Q Consensus 186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l 265 (333)
+|++|++++|. +..+ ..++.+++|++|++.++.... .. .+..+++|+. |++.+..- . .+ ..+
T Consensus 135 ~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~------~~---~l~~l~~L~~-L~L~~N~i-~----~l-~~l 196 (291)
T 1h6t_A 135 QLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISD------IV---PLAGLTKLQN-LYLSKNHI-S----DL-RAL 196 (291)
T ss_dssp TCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCC------CG---GGTTCTTCCE-EECCSSCC-C----BC-GGG
T ss_pred CCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCcccc------ch---hhcCCCccCE-EECCCCcC-C----CC-hhh
Confidence 99999999998 6777 569999999999998877654 11 2667777776 77776321 1 12 348
Q ss_pred cccCCCCceEEEeccC
Q 048772 266 KEKKNLDRLELWFDNV 281 (333)
Q Consensus 266 ~~l~~L~~L~l~~~~~ 281 (333)
..+++|+.|++++|..
T Consensus 197 ~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 197 AGLKNLDVLELFSQEC 212 (291)
T ss_dssp TTCTTCSEEEEEEEEE
T ss_pred ccCCCCCEEECcCCcc
Confidence 8899999999998854
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=1.4e-14 Score=128.99 Aligned_cols=157 Identities=13% Similarity=0.092 Sum_probs=85.1
Q ss_pred cccccceEeeccccccccCCCcchHh--hcccccCeeeccCCcCcc-cc----hhhhccccCcEEeccCCCCCCcCC-hh
Q 048772 109 FTCLRALRICGENVWEIGNSKIPKAM--KNLIHLRFLKLSWLRIKE-LP----ETCCELINLETLEINRCTRLKRLP-QG 180 (333)
Q Consensus 109 ~~~L~~L~l~~~~~~~~~~~~lp~~~--~~l~~L~~L~l~~~~i~~-lp----~~i~~L~~L~~L~l~~~~~~~~lp-~~ 180 (333)
++.|+.|++++|.+. ...|..+ ..+++|++|++++|.++. .| ..+..+++|++|++++ +.+..+| ..
T Consensus 90 ~~~L~~L~l~~n~l~----~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~ 164 (310)
T 4glp_A 90 YSRLKELTLEDLKIT----GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQ-AHSPAFSCEQ 164 (310)
T ss_dssp HSCCCEEEEESCCCB----SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEEC-CSSCCCCTTS
T ss_pred cCceeEEEeeCCEec----cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeC-CCcchhhHHH
Confidence 455777777777662 3444444 667777777777777653 22 2334567777777776 4455444 45
Q ss_pred hhcCCCCCeeeccccccccc--Cch--hhcCCCCCCccceEEeCCCCCcccCcccchhh-hcCcccccceeEEcccCCCC
Q 048772 181 MEKLMNLRHLIIMNHVYLEY--MPR--GIERLTGLRTLSEFVVGRTGGEHASKVCKLEA-LKGMNHLRGLLKIRMLGDLA 255 (333)
Q Consensus 181 ~~~L~~L~~L~l~~~~~l~~--~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~-L~~L~~L~~~L~~~~~~~~~ 255 (333)
++++++|++|++++|..... +|. .++.+++|++|++.++.... .+..... +..+++|+. |++.+..
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~~l~~L~~-L~Ls~N~--- 235 (310)
T 4glp_A 165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-----PTGVCAALAAAGVQPHS-LDLSHNS--- 235 (310)
T ss_dssp CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-----HHHHHHHHHHHTCCCSS-EECTTSC---
T ss_pred hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-----hHHHHHHHHhcCCCCCE-EECCCCC---
Confidence 66777777777777652211 221 23566777777776655432 1111111 244455555 5555421
Q ss_pred CchhhhhhcCccc---CCCCceEEEecc
Q 048772 256 NVDEAKHVDLKEK---KNLDRLELWFDN 280 (333)
Q Consensus 256 ~~~~~~~~~l~~l---~~L~~L~l~~~~ 280 (333)
..+..+..+..+ ++|++|++++|.
T Consensus 236 -l~~~~p~~~~~~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 236 -LRATVNPSAPRCMWSSALNSLNLSFAG 262 (310)
T ss_dssp -CCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred -CCccchhhHHhccCcCcCCEEECCCCC
Confidence 222223334443 567777776663
No 88
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.50 E-value=2.9e-14 Score=138.56 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=57.9
Q ss_pred cccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCCh-hhhcCCCC
Q 048772 111 CLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQ-GMEKLMNL 187 (333)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L 187 (333)
.+++|++++|.+ ..+| ..|.++++|++|+|++|.|+.+|+ .+++|++|++|+|++ +.++.+|. .|.+|++|
T Consensus 53 ~~~~LdLs~N~i-----~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 53 STKNLDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSL 126 (635)
T ss_dssp TCCEEECTTSCC-----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCEECGGGGTTCTTC
T ss_pred CCCEEEeeCCCC-----CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC-CcCCCCCHHHhcCCCCC
Confidence 455666666655 4443 245556666666666666655543 455566666666665 44555553 34556666
Q ss_pred CeeecccccccccCchh-hcCCCCCCccceEEeCC
Q 048772 188 RHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGR 221 (333)
Q Consensus 188 ~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~ 221 (333)
++|++++|. +..+|.. +++|++|++|++.++..
T Consensus 127 ~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 127 QKLVAVETN-LASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp CEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred CEEECCCCc-CCCCChhhhhcCcccCeeccccCcc
Confidence 666666655 4455433 55666666666555443
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=129.44 Aligned_cols=189 Identities=13% Similarity=0.021 Sum_probs=133.7
Q ss_pred hhhHh--hhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCc-
Q 048772 102 LEDVF--KQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKR- 176 (333)
Q Consensus 102 ~~~~~--~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~- 176 (333)
.+..+ ..+++|++|++++|.+.... ..++ ..+..+++|++|++++|.+..+| ..++.+++|++|++++ +.+..
T Consensus 107 ~~~~~~~~~~~~L~~L~Ls~n~i~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~ 184 (310)
T 4glp_A 107 MPPLPLEATGLALSSLRLRNVSWATGR-SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSD-NPGLGE 184 (310)
T ss_dssp CCCCSSSCCCBCCSSCEEESCCCSSTT-SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCS-CTTCHH
T ss_pred hhhhhhhccCCCCCEEEeecccccchh-hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCC-CCCccc
Confidence 34444 78899999999999983100 0112 34567999999999999998776 6889999999999999 44432
Q ss_pred --CCh--hhhcCCCCCeeecccccccccCchh----hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEE
Q 048772 177 --LPQ--GMEKLMNLRHLIIMNHVYLEYMPRG----IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKI 248 (333)
Q Consensus 177 --lp~--~~~~L~~L~~L~l~~~~~l~~~p~~----i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~ 248 (333)
+|. .++.+++|++|++++|. ++.+|.. ++.+++|++|++.++.... ..+..+..+..+++|+. |++
T Consensus 185 ~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~----~~p~~~~~~~~~~~L~~-L~L 258 (310)
T 4glp_A 185 RGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRA----TVNPSAPRCMWSSALNS-LNL 258 (310)
T ss_dssp HHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCC----CCCSCCSSCCCCTTCCC-EEC
T ss_pred hhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCc----cchhhHHhccCcCcCCE-EEC
Confidence 332 24789999999999998 6766653 5788999999998887665 11233444444467776 777
Q ss_pred cccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChh
Q 048772 249 RMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWI 322 (333)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~ 322 (333)
.+.. . ..++..+. ++|+.|++++|...+. ..+.. +++|+.|++++|.+..
T Consensus 259 s~N~----l-~~lp~~~~--~~L~~L~Ls~N~l~~~--------------~~~~~---l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 259 SFAG----L-EQVPKGLP--AKLRVLDLSSNRLNRA--------------PQPDE---LPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSSC----C-CSCCSCCC--SCCSCEECCSCCCCSC--------------CCTTS---CCCCSCEECSSTTTSC
T ss_pred CCCC----C-Cchhhhhc--CCCCEEECCCCcCCCC--------------chhhh---CCCccEEECcCCCCCC
Confidence 6532 1 13444453 7999999998853321 12344 7899999999998753
No 90
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=4.2e-14 Score=119.66 Aligned_cols=105 Identities=24% Similarity=0.378 Sum_probs=56.8
Q ss_pred ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChh-hhcCCC
Q 048772 110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQG-MEKLMN 186 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~ 186 (333)
+.++.|++++|.+ ..+|. .+..+++|++|++++|.++.+ |..+.++++|++|++++ +.+..+|.. +.++++
T Consensus 32 ~~l~~L~l~~n~i-----~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQNTI-----KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSSCC-----CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred cCCCEEECCCCcC-----CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCC
Confidence 3455666666655 33333 355555666666666655544 44555666666666665 445555544 345566
Q ss_pred CCeeecccccccccC-chhhcCCCCCCccceEEeCC
Q 048772 187 LRHLIIMNHVYLEYM-PRGIERLTGLRTLSEFVVGR 221 (333)
Q Consensus 187 L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~ 221 (333)
|++|++++|. +..+ |..++.+++|++|++.++..
T Consensus 106 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 106 LQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcC
Confidence 6666666555 3333 33455555555555554443
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=9.5e-14 Score=133.21 Aligned_cols=168 Identities=18% Similarity=0.129 Sum_probs=121.0
Q ss_pred cccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCC
Q 048772 109 FTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLR 188 (333)
Q Consensus 109 ~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~ 188 (333)
+++|++|++++|.+ ..+| ..+++|++|++++|.++.+|. +++ +|++|++++ +.++.+|. .+++|+
T Consensus 79 ~~~L~~L~Ls~N~l-----~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~-N~l~~lp~---~l~~L~ 143 (571)
T 3cvr_A 79 PPQITVLEITQNAL-----ISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN-NQLTMLPE---LPALLE 143 (571)
T ss_dssp CTTCSEEECCSSCC-----SCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS-SCCSCCCC---CCTTCC
T ss_pred cCCCCEEECcCCCC-----cccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC-CcCCCCCC---cCcccc
Confidence 36789999999988 6777 457889999999999888888 665 899999998 67888887 688999
Q ss_pred eeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCccc
Q 048772 189 HLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEK 268 (333)
Q Consensus 189 ~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l 268 (333)
+|++++|. +..+|. .+++|++|++.++.... .+. +. ++|+. |++.+.. +. .++. +..
T Consensus 144 ~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~-----lp~----l~--~~L~~-L~Ls~N~-L~----~lp~-~~~- 200 (571)
T 3cvr_A 144 YINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTF-----LPE----LP--ESLEA-LDVSTNL-LE----SLPA-VPV- 200 (571)
T ss_dssp EEECCSSC-CSCCCC---CCTTCCEEECCSSCCSC-----CCC----CC--TTCCE-EECCSSC-CS----SCCC-CC--
T ss_pred EEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCC-----cch----hh--CCCCE-EECcCCC-CC----chhh-HHH-
Confidence 99999888 677876 57888888888776554 122 22 55555 6665521 11 2233 332
Q ss_pred CCC-------CceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhhh
Q 048772 269 KNL-------DRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNF 331 (333)
Q Consensus 269 ~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~l 331 (333)
+| +.|++++|.+. . ++..+.. +++|+.|++++|.+.+.+|.+++.+
T Consensus 201 -~L~~~~~~L~~L~Ls~N~l~-----~--------lp~~l~~---l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCRENRIT-----H--------IPENILS---LDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp --------CCEEEECCSSCCC-----C--------CCGGGGG---SCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -hhhcccccceEEecCCCcce-----e--------cCHHHhc---CCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 55 88999887532 2 4555666 7889999999999877688888764
No 92
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.47 E-value=8.7e-14 Score=134.95 Aligned_cols=78 Identities=24% Similarity=0.244 Sum_probs=43.0
Q ss_pred cccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCC
Q 048772 109 FTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLR 188 (333)
Q Consensus 109 ~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~ 188 (333)
+++|++|++++|.+ ..+|. .+++|++|++++|.++.+|. .+.+|++|++++ +.+..+|.. +++|+
T Consensus 80 l~~L~~L~Ls~N~l-----~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~-N~l~~lp~~---l~~L~ 144 (622)
T 3g06_A 80 PPELRTLEVSGNQL-----TSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFG-NQLTSLPVL---PPGLQ 144 (622)
T ss_dssp CTTCCEEEECSCCC-----SCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCS-SCCSCCCCC---CTTCC
T ss_pred CCCCCEEEcCCCcC-----CcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCC-CCCCcCCCC---CCCCC
Confidence 45666666666665 44554 45566666666666665554 344555555555 345555542 25556
Q ss_pred eeecccccccccCc
Q 048772 189 HLIIMNHVYLEYMP 202 (333)
Q Consensus 189 ~L~l~~~~~l~~~p 202 (333)
+|++++|. +..+|
T Consensus 145 ~L~Ls~N~-l~~l~ 157 (622)
T 3g06_A 145 ELSVSDNQ-LASLP 157 (622)
T ss_dssp EEECCSSC-CSCCC
T ss_pred EEECcCCc-CCCcC
Confidence 66665554 44444
No 93
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=8.1e-14 Score=112.61 Aligned_cols=107 Identities=25% Similarity=0.323 Sum_probs=64.0
Q ss_pred ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCc-CChhhhcCCCCC
Q 048772 110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKR-LPQGMEKLMNLR 188 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~-lp~~~~~L~~L~ 188 (333)
+.|+.|++++|.+.+ ..+|..+..+++|++|++++|.++.+ ..++.+++|++|++++ +.+.. +|..++++++|+
T Consensus 24 ~~L~~L~l~~n~l~~---~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 24 AAVRELVLDNCKSND---GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSE-NRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TSCSEEECCSCBCBT---TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEES-CCCCSCCCHHHHHCTTCC
T ss_pred ccCCEEECCCCCCCh---hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcC-CcCchHHHHHHhhCCCCC
Confidence 556666666666510 15555556666666666666666655 5566666666666666 44444 555555566666
Q ss_pred eeecccccccccCc--hhhcCCCCCCccceEEeCCC
Q 048772 189 HLIIMNHVYLEYMP--RGIERLTGLRTLSEFVVGRT 222 (333)
Q Consensus 189 ~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~ 222 (333)
+|++++|. +..+| ..++.+++|++|++.++...
T Consensus 99 ~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 99 HLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp EEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred EEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 66666665 55554 45666666666666555443
No 94
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=9e-14 Score=137.59 Aligned_cols=116 Identities=20% Similarity=0.216 Sum_probs=102.4
Q ss_pred hhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh
Q 048772 101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG 180 (333)
Q Consensus 101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~ 180 (333)
.++..+..++.|++|++++|.+ ..+|..+..+++|++|+|++|.++.+|..+++|++|++|+|++ +.+..+|..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l-----~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~ 288 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQI-----FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAE 288 (727)
T ss_dssp -------CCCCCCEEECTTSCC-----SCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT-SCCSSCCSS
T ss_pred cChhhhccCCCCcEEECCCCCC-----CCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcC-CcCCccChh
Confidence 4567788899999999999998 7889889999999999999999999999999999999999999 778899999
Q ss_pred hhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCC
Q 048772 181 MEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTG 223 (333)
Q Consensus 181 ~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~ 223 (333)
|++|++|++|++++|. +..+|..|++|++|++|++.++....
T Consensus 289 ~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred hcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCC
Confidence 9999999999999998 78999999999999999998877654
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=1.1e-13 Score=132.66 Aligned_cols=167 Identities=18% Similarity=0.162 Sum_probs=125.2
Q ss_pred ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCe
Q 048772 110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRH 189 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~ 189 (333)
.+++.|++++|.+ ..+|..+. ++|++|++++|.++.+| +.+++|++|++++ +.+..+|. +++ +|++
T Consensus 59 ~~L~~L~Ls~n~L-----~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~-N~l~~ip~-l~~--~L~~ 124 (571)
T 3cvr_A 59 NQFSELQLNRLNL-----SSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACD-NRLSTLPE-LPA--SLKH 124 (571)
T ss_dssp TTCSEEECCSSCC-----SCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCS-SCCSCCCC-CCT--TCCE
T ss_pred CCccEEEeCCCCC-----CccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccC-CCCCCcch-hhc--CCCE
Confidence 3899999999998 66887663 78999999999999999 5689999999999 67888998 665 9999
Q ss_pred eecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccC
Q 048772 190 LIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKK 269 (333)
Q Consensus 190 L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 269 (333)
|++++|. +..+|. .+++|++|++.++.... .+. .+++|+. |++.+.. . ..++. +. +
T Consensus 125 L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~l~~-----lp~------~l~~L~~-L~Ls~N~----L-~~lp~-l~--~ 180 (571)
T 3cvr_A 125 LDVDNNQ-LTMLPE---LPALLEYINADNNQLTM-----LPE------LPTSLEV-LSVRNNQ----L-TFLPE-LP--E 180 (571)
T ss_dssp EECCSSC-CSCCCC---CCTTCCEEECCSSCCSC-----CCC------CCTTCCE-EECCSSC----C-SCCCC-CC--T
T ss_pred EECCCCc-CCCCCC---cCccccEEeCCCCccCc-----CCC------cCCCcCE-EECCCCC----C-CCcch-hh--C
Confidence 9999998 777887 68999999998877654 122 3556665 6666532 1 11344 54 8
Q ss_pred CCCceEEEeccCCCCCCCccchHHHHHHhh---hc-cCCCCCCCceeeEEeeecChhhhhhhHhhh
Q 048772 270 NLDRLELWFDNVGMPDENEENDEAITKIAK---SV-RVCLLWDNCHPLKYSRYGIWIVWKEWVMNF 331 (333)
Q Consensus 270 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~---~l-~~~~~~~~L~~L~l~~~~~~~~~p~w~~~l 331 (333)
+|+.|+|+.|.+.. ++. .+ .+ ++.|+.|++++|.+.. +|.++..+
T Consensus 181 ~L~~L~Ls~N~L~~-------------lp~~~~~L~~~---~~~L~~L~Ls~N~l~~-lp~~l~~l 229 (571)
T 3cvr_A 181 SLEALDVSTNLLES-------------LPAVPVRNHHS---EETEIFFRCRENRITH-IPENILSL 229 (571)
T ss_dssp TCCEEECCSSCCSS-------------CCCCC-----------CCEEEECCSSCCCC-CCGGGGGS
T ss_pred CCCEEECcCCCCCc-------------hhhHHHhhhcc---cccceEEecCCCccee-cCHHHhcC
Confidence 99999999885321 221 11 11 2334999999999998 99988753
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=2.5e-13 Score=131.43 Aligned_cols=150 Identities=25% Similarity=0.326 Sum_probs=122.9
Q ss_pred HhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcC
Q 048772 105 VFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKL 184 (333)
Q Consensus 105 ~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L 184 (333)
.+..+++|+.|++++|.+ ..+|. +..+++|+.|+|++|.++.+| .++.+++|++|+|++ +.+..+| .+..|
T Consensus 60 ~l~~l~~L~~L~Ls~N~l-----~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l~-~l~~l 130 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKL-----TDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH-NGISDIN-GLVHL 130 (605)
T ss_dssp TGGGCTTCCEEECTTSCC-----CCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT-SCCCCCG-GGGGC
T ss_pred HHccCCCCCEEEeeCCCC-----CCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC-CCCCCCc-cccCC
Confidence 367899999999999998 66665 899999999999999999887 689999999999999 6688875 58999
Q ss_pred CCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772 185 MNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD 264 (333)
Q Consensus 185 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~ 264 (333)
++|+.|++++|. +..+ ..++.|++|++|++.++.... .. .+..++.|+. |++.+..- .+ ...
T Consensus 131 ~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~------~~---~l~~l~~L~~-L~Ls~N~i----~~--l~~ 192 (605)
T 1m9s_A 131 PQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISD------IV---PLAGLTKLQN-LYLSKNHI----SD--LRA 192 (605)
T ss_dssp TTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCC------CG---GGTTCTTCCE-EECCSSCC----CB--CGG
T ss_pred CccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCC------ch---hhccCCCCCE-EECcCCCC----CC--ChH
Confidence 999999999998 6777 569999999999998877654 11 1667777776 77776321 11 246
Q ss_pred CcccCCCCceEEEeccC
Q 048772 265 LKEKKNLDRLELWFDNV 281 (333)
Q Consensus 265 l~~l~~L~~L~l~~~~~ 281 (333)
+..+++|+.|+|+.|..
T Consensus 193 l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQEC 209 (605)
T ss_dssp GTTCTTCSEEECCSEEE
T ss_pred HccCCCCCEEEccCCcC
Confidence 88899999999998854
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=2.6e-13 Score=115.52 Aligned_cols=126 Identities=26% Similarity=0.371 Sum_probs=87.0
Q ss_pred ccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCChh-hhcCCC
Q 048772 110 TCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQG-MEKLMN 186 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~ 186 (333)
+.|++|++++|.+ ..+ |..+..+++|++|++++|.++.+|. .++.+++|++|++++ +.+..+|.. +..+++
T Consensus 40 ~~L~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDNQI-----TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSSCC-----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred CCCCEEEcCCCcc-----CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC-CcCCccChhHhCcchh
Confidence 6678888888877 333 5567778888888888888877774 457788888888887 567777654 567888
Q ss_pred CCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcc
Q 048772 187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRM 250 (333)
Q Consensus 187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~ 250 (333)
|++|++++|. +..+|..++.+++|++|++.++.... .....+..+++|+. |++.+
T Consensus 114 L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~-L~l~~ 168 (229)
T 3e6j_A 114 LKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKS-------IPHGAFDRLSSLTH-AYLFG 168 (229)
T ss_dssp CCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCC-------CCTTTTTTCTTCCE-EECTT
T ss_pred hCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCc-------cCHHHHhCCCCCCE-EEeeC
Confidence 8888888777 67777777888888888777665443 11133444555554 55544
No 98
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=1.3e-13 Score=111.38 Aligned_cols=114 Identities=23% Similarity=0.278 Sum_probs=87.5
Q ss_pred hhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcc-cchhhhccccCcEEeccCCCCCCcCC-
Q 048772 101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKE-LPETCCELINLETLEINRCTRLKRLP- 178 (333)
Q Consensus 101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-lp~~i~~L~~L~~L~l~~~~~~~~lp- 178 (333)
.++..+..+++|++|++++|.+ ..+ ..+..+++|++|++++|.++. +|..++++++|++|++++ +.+..+|
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l-----~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~ 112 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGL-----ISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG-NKLKDIST 112 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCC-----CCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS-SSCCSSGG
T ss_pred hHHHHHHhCCCCCEEeCcCCCC-----CCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC-CccCcchh
Confidence 4566667788888888888887 444 567778888888888888776 677777788888888888 5677776
Q ss_pred -hhhhcCCCCCeeecccccccccCch----hhcCCCCCCccceEEeCCC
Q 048772 179 -QGMEKLMNLRHLIIMNHVYLEYMPR----GIERLTGLRTLSEFVVGRT 222 (333)
Q Consensus 179 -~~~~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~~~~ 222 (333)
..+..+++|++|++++|. +..+|. .+..+++|++|++..+...
T Consensus 113 ~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 113 LEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp GGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 577888888888888887 666665 5788888888888776544
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.45 E-value=1.1e-13 Score=115.76 Aligned_cols=177 Identities=18% Similarity=0.190 Sum_probs=126.6
Q ss_pred cceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCChh-hhcCCCCCee
Q 048772 113 RALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQG-MEKLMNLRHL 190 (333)
Q Consensus 113 ~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L 190 (333)
+.++.+++.+ ..+|..+ .++|++|++++|.++.+|. .++++++|++|++++ +.+..+|.. +.++++|++|
T Consensus 10 ~~v~c~~~~l-----~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L 81 (208)
T 2o6s_A 10 TTVECYSQGR-----TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYL 81 (208)
T ss_dssp TEEECCSSCC-----SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEecCCCc-----cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCC-CccCccChhhcCCCCCcCEE
Confidence 4566667766 5666443 4588999999999888875 468899999999998 677887765 5789999999
Q ss_pred ecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccC
Q 048772 191 IIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKK 269 (333)
Q Consensus 191 ~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 269 (333)
++++|. +..+|.. ++.+++|++|++.++.... .....+..+++|+. |++.+.. ..+.....+..++
T Consensus 82 ~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~-L~l~~N~----l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 82 NLSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQS-------LPDGVFDKLTQLKD-LRLYQNQ----LKSVPDGVFDRLT 148 (208)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCE-EECCSSC----CSCCCTTTTTTCT
T ss_pred ECCCCc-CCccCHhHhcCccCCCEEEcCCCcCcc-------cCHhHhccCCcCCE-EECCCCc----cceeCHHHhccCC
Confidence 999987 6777755 6889999999987776543 12223456666665 6666521 2222334477888
Q ss_pred CCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhhhh
Q 048772 270 NLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNFW 332 (333)
Q Consensus 270 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~l~ 332 (333)
+|+.|+++.|.. ... +++|+.|++.++...+.+|.|++.++
T Consensus 149 ~L~~L~l~~N~~-------------------~~~---~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 149 SLQYIWLHDNPW-------------------DCT---CPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TCCEEECCSCCB-------------------CCC---TTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CccEEEecCCCe-------------------ecC---CCCHHHHHHHHHhCCceeeccCcccc
Confidence 999999987731 223 66788888888777755888887765
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=1.9e-13 Score=115.66 Aligned_cols=147 Identities=15% Similarity=0.202 Sum_probs=80.6
Q ss_pred cceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc--hhhhccccCcEEeccCCCCCCcCCh-hhhcCCCCCe
Q 048772 113 RALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP--ETCCELINLETLEINRCTRLKRLPQ-GMEKLMNLRH 189 (333)
Q Consensus 113 ~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~ 189 (333)
++++++++.+ ..+|..+. ..+++|++++|.++.++ ..++++++|++|++++ +.+..+|. .+.++++|++
T Consensus 14 ~~l~~s~n~l-----~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 14 TTVDCSNQKL-----NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN-NKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp TEEECCSSCC-----SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS-SCCCEECTTTTTTCTTCCE
T ss_pred CEeEeCCCCc-----ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC-CcCCEECHHHhCCCCCCCE
Confidence 4566666665 45554432 23466666666666553 2356666666666666 45555543 4666666666
Q ss_pred eecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCccc
Q 048772 190 LIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEK 268 (333)
Q Consensus 190 L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l 268 (333)
|++++|. +..+|.. ++.+++|++|++.++.... .....+..+++|+. |++.+. ......+..+..+
T Consensus 86 L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~-L~L~~N----~l~~~~~~~~~~l 152 (220)
T 2v70_A 86 ILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITC-------VGNDSFIGLSSVRL-LSLYDN----QITTVAPGAFDTL 152 (220)
T ss_dssp EECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCC-------BCTTSSTTCTTCSE-EECTTS----CCCCBCTTTTTTC
T ss_pred EECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCe-------ECHhHcCCCccCCE-EECCCC----cCCEECHHHhcCC
Confidence 6666666 4444433 6666666666665554433 11223344444554 555441 1222234556666
Q ss_pred CCCCceEEEecc
Q 048772 269 KNLDRLELWFDN 280 (333)
Q Consensus 269 ~~L~~L~l~~~~ 280 (333)
++|+.|++++|.
T Consensus 153 ~~L~~L~L~~N~ 164 (220)
T 2v70_A 153 HSLSTLNLLANP 164 (220)
T ss_dssp TTCCEEECCSCC
T ss_pred CCCCEEEecCcC
Confidence 777777776654
No 101
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=5.7e-14 Score=111.18 Aligned_cols=108 Identities=21% Similarity=0.267 Sum_probs=82.3
Q ss_pred cccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCc-CChhhhcCCCC
Q 048772 109 FTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKR-LPQGMEKLMNL 187 (333)
Q Consensus 109 ~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~-lp~~~~~L~~L 187 (333)
.++|+.|++++|.+.+ ..+|..+..+++|++|++++|.++.+ ..++++++|++|++++ +.+.. +|..++++++|
T Consensus 16 ~~~l~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE---GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD-NRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBT---TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCS-SCCCSCTHHHHHHCTTC
T ss_pred CccCeEEEccCCcCCh---hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCC-CcccchHHHHhhhCCCC
Confidence 4678888888888710 26777778888888888888888777 6678888888888888 55665 77777778888
Q ss_pred CeeecccccccccCc--hhhcCCCCCCccceEEeCCC
Q 048772 188 RHLIIMNHVYLEYMP--RGIERLTGLRTLSEFVVGRT 222 (333)
Q Consensus 188 ~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~ 222 (333)
++|++++|. +..+| ..++.+++|++|++.++...
T Consensus 91 ~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 91 THLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 888888887 66654 66788888888887666543
No 102
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.43 E-value=1.5e-13 Score=133.31 Aligned_cols=188 Identities=20% Similarity=0.119 Sum_probs=123.4
Q ss_pred ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCe
Q 048772 110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRH 189 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~ 189 (333)
++|++|++++|.+ ..+|. .+++|++|++++|.++.+|. .+++|++|++++ +.+..+|. .+++|+.
T Consensus 61 ~~L~~L~L~~N~l-----~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~l~~l~~---~l~~L~~ 125 (622)
T 3g06_A 61 AHITTLVIPDNNL-----TSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS-NPLTHLPA---LPSGLCK 125 (622)
T ss_dssp TTCSEEEECSCCC-----SCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS-CCCCCCCC---CCTTCCE
T ss_pred CCCcEEEecCCCC-----CCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC-CcCCCCCC---CCCCcCE
Confidence 7899999999998 67776 57899999999999999997 789999999999 77888987 6789999
Q ss_pred eecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCc--------------ccccceeEEcccCCCC
Q 048772 190 LIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGM--------------NHLRGLLKIRMLGDLA 255 (333)
Q Consensus 190 L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L--------------~~L~~~L~~~~~~~~~ 255 (333)
|++++|. +..+|.. +++|++|++.++.... .+..+..|..| ++|+. |++.+..- .
T Consensus 126 L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~-L~Ls~N~l-~ 194 (622)
T 3g06_A 126 LWIFGNQ-LTSLPVL---PPGLQELSVSDNQLAS-----LPALPSELCKLWAYNNQLTSLPMLPSGLQE-LSVSDNQL-A 194 (622)
T ss_dssp EECCSSC-CSCCCCC---CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSCCCCCCTTCCE-EECCSSCC-S
T ss_pred EECCCCC-CCcCCCC---CCCCCEEECcCCcCCC-----cCCccCCCCEEECCCCCCCCCcccCCCCcE-EECCCCCC-C
Confidence 9999998 7888874 4788899888776554 22333344433 55554 55554221 1
Q ss_pred CchhhhhhcCccc--------------CCCCceEEEeccCCCCCCCc--c-----chHHHHHHhhhccCCCCCCCceeeE
Q 048772 256 NVDEAKHVDLKEK--------------KNLDRLELWFDNVGMPDENE--E-----NDEAITKIAKSVRVCLLWDNCHPLK 314 (333)
Q Consensus 256 ~~~~~~~~~l~~l--------------~~L~~L~l~~~~~~~~~~~~--~-----~~~~~~~~~~~l~~~~~~~~L~~L~ 314 (333)
... ..+..+..+ ++|+.|++++|...+..... . ..+ -+..+.+ .+++|+.|+
T Consensus 195 ~l~-~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N----~L~~lp~--~~~~L~~L~ 267 (622)
T 3g06_A 195 SLP-TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGN----RLTSLPM--LPSGLLSLS 267 (622)
T ss_dssp CCC-CCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS----CCSCCCC--CCTTCCEEE
T ss_pred CCC-CccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCC----CCCcCCc--ccccCcEEe
Confidence 100 011222222 56666777666543311000 0 001 1112222 256788888
Q ss_pred EeeecChhhhhhhHhhh
Q 048772 315 YSRYGIWIVWKEWVMNF 331 (333)
Q Consensus 315 l~~~~~~~~~p~w~~~l 331 (333)
+++|.+.. +|.++..+
T Consensus 268 Ls~N~L~~-lp~~l~~l 283 (622)
T 3g06_A 268 VYRNQLTR-LPESLIHL 283 (622)
T ss_dssp CCSSCCCS-CCGGGGGS
T ss_pred CCCCCCCc-CCHHHhhc
Confidence 88888776 78777654
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=5.8e-14 Score=111.12 Aligned_cols=109 Identities=25% Similarity=0.317 Sum_probs=95.3
Q ss_pred hhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcc-cchhhhccccCcEEeccCCCCCCcCC-
Q 048772 101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKE-LPETCCELINLETLEINRCTRLKRLP- 178 (333)
Q Consensus 101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-lp~~i~~L~~L~~L~l~~~~~~~~lp- 178 (333)
.++..+..+++|++|++++|.+ ..+ ..++.+++|++|++++|.++. +|..++.+++|++|++++ +.+..+|
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l-----~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~-N~i~~~~~ 105 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGL-----TSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG-NKIKDLST 105 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCC-----CCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT-SCCCSHHH
T ss_pred HHHHHHhhcCCCcEEECcCCCC-----CCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC-CcCCChHH
Confidence 4566778899999999999998 555 678899999999999999997 888888999999999999 6788875
Q ss_pred -hhhhcCCCCCeeecccccccccCch----hhcCCCCCCccceE
Q 048772 179 -QGMEKLMNLRHLIIMNHVYLEYMPR----GIERLTGLRTLSEF 217 (333)
Q Consensus 179 -~~~~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~ 217 (333)
..++.+++|++|++++|. +..+|. .++.+++|++|++.
T Consensus 106 ~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 106 IEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 789999999999999998 677775 58899999998864
No 104
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=1.4e-14 Score=120.47 Aligned_cols=110 Identities=22% Similarity=0.268 Sum_probs=61.6
Q ss_pred cchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhcCCC
Q 048772 130 IPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLT 209 (333)
Q Consensus 130 lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~ 209 (333)
+|..+..+++|++|++++|.++.+| .++++++|++|++++ +.+..+|..++.+++|++|++++|. +..+| .++.++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~-n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~ 115 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGR-NLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLV 115 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEE-EEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCC-CCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCC
Confidence 3445666666666666666666665 566666666666666 4455666555555666666666665 45554 455566
Q ss_pred CCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcc
Q 048772 210 GLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRM 250 (333)
Q Consensus 210 ~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~ 250 (333)
+|++|++.++.... ...+..+..+++|+. |++.+
T Consensus 116 ~L~~L~l~~N~i~~------~~~~~~l~~l~~L~~-L~l~~ 149 (198)
T 1ds9_A 116 NLRVLYMSNNKITN------WGEIDKLAALDKLED-LLLAG 149 (198)
T ss_dssp HSSEEEESEEECCC------HHHHHHHTTTTTCSE-EEECS
T ss_pred CCCEEECCCCcCCc------hhHHHHHhcCCCCCE-EEecC
Confidence 66666665554432 111234445555554 55543
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=3.8e-13 Score=114.47 Aligned_cols=149 Identities=21% Similarity=0.272 Sum_probs=111.9
Q ss_pred cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChh-hhcCCCCC
Q 048772 111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQG-MEKLMNLR 188 (333)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L~ 188 (333)
.-+.++.+++.+ ..+|..+. ++|++|++++|.++.+ |..++++++|++|++++ +.+..+|.. +..+++|+
T Consensus 20 s~~~v~c~~~~l-----~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~ 91 (229)
T 3e6j_A 20 SGTTVDCRSKRH-----ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQLT 91 (229)
T ss_dssp ETTEEECTTSCC-----SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred eCCEeEccCCCc-----CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC-CCCCCcChhhcccCCCcC
Confidence 456788888887 77776554 8899999999999977 57789999999999999 778888865 68999999
Q ss_pred eeecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcc
Q 048772 189 HLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKE 267 (333)
Q Consensus 189 ~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 267 (333)
+|++++|. +..+|.. ++.+++|++|++.++.... .+ ..+..+++|+. |++.+. .........+..
T Consensus 92 ~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~-----lp---~~~~~l~~L~~-L~L~~N----~l~~~~~~~~~~ 157 (229)
T 3e6j_A 92 VLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKLTE-----LP---RGIERLTHLTH-LALDQN----QLKSIPHGAFDR 157 (229)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCS-----CC---TTGGGCTTCSE-EECCSS----CCCCCCTTTTTT
T ss_pred EEECCCCc-CCccChhHhCcchhhCeEeccCCcccc-----cC---cccccCCCCCE-EECCCC----cCCccCHHHHhC
Confidence 99999998 7788765 6899999999998776553 22 23455555665 666542 112222345677
Q ss_pred cCCCCceEEEeccC
Q 048772 268 KKNLDRLELWFDNV 281 (333)
Q Consensus 268 l~~L~~L~l~~~~~ 281 (333)
+++|+.|++++|..
T Consensus 158 l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 158 LSSLTHAYLFGNPW 171 (229)
T ss_dssp CTTCCEEECTTSCB
T ss_pred CCCCCEEEeeCCCc
Confidence 78888888877653
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.41 E-value=5.3e-13 Score=112.86 Aligned_cols=147 Identities=15% Similarity=0.281 Sum_probs=80.1
Q ss_pred cceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcC-ChhhhcCCCCCee
Q 048772 113 RALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRL-PQGMEKLMNLRHL 190 (333)
Q Consensus 113 ~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L 190 (333)
+.++++++.+ ..+|..+. +.|+.|++++|.++.+|. .+..+++|++|++++ +.+..+ |..+.++++|++|
T Consensus 14 ~~v~c~~~~l-----~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L 85 (220)
T 2v9t_B 14 NIVDCRGKGL-----TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRSLNSL 85 (220)
T ss_dssp TEEECTTSCC-----SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS-SCCCEECTTTTTTCSSCCEE
T ss_pred CEEEcCCCCc-----CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC-CcCCCcCHHHhhCCcCCCEE
Confidence 3455555555 45554433 456666666666665553 556666666666666 445544 4556666666666
Q ss_pred ecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccC
Q 048772 191 IIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKK 269 (333)
Q Consensus 191 ~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 269 (333)
++++|. +..+|.. ++.+++|++|++.++.... .....+..+++|+. |++.+. ......+..+..++
T Consensus 86 ~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~-L~L~~N----~l~~~~~~~~~~l~ 152 (220)
T 2v9t_B 86 VLYGNK-ITELPKSLFEGLFSLQLLLLNANKINC-------LRVDAFQDLHNLNL-LSLYDN----KLQTIAKGTFSPLR 152 (220)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCE-EECCSS----CCSCCCTTTTTTCT
T ss_pred ECCCCc-CCccCHhHccCCCCCCEEECCCCCCCE-------eCHHHcCCCCCCCE-EECCCC----cCCEECHHHHhCCC
Confidence 666665 5555554 4566666666666555443 12223444444554 544442 11222233455566
Q ss_pred CCCceEEEecc
Q 048772 270 NLDRLELWFDN 280 (333)
Q Consensus 270 ~L~~L~l~~~~ 280 (333)
+|+.|++++|.
T Consensus 153 ~L~~L~L~~N~ 163 (220)
T 2v9t_B 153 AIQTMHLAQNP 163 (220)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 66666666553
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=1.4e-13 Score=132.36 Aligned_cols=166 Identities=14% Similarity=0.160 Sum_probs=100.4
Q ss_pred hhhhhHhhhcccccceEeecccccc--------c-cCCCcchHhhcccccCeee-ccCCcCcccch------hhhcc--c
Q 048772 100 KELEDVFKQFTCLRALRICGENVWE--------I-GNSKIPKAMKNLIHLRFLK-LSWLRIKELPE------TCCEL--I 161 (333)
Q Consensus 100 ~~~~~~~~~~~~L~~L~l~~~~~~~--------~-~~~~lp~~~~~l~~L~~L~-l~~~~i~~lp~------~i~~L--~ 161 (333)
..+|..+.+++.|+.|+++++..+. . ....+|..++.+++|+.|+ ++.+.+..++. .+..+ .
T Consensus 362 ~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~ 441 (567)
T 1dce_A 362 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 441 (567)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCcc
Confidence 4567777777777777775553000 0 0134556677777777777 55544333332 12221 2
Q ss_pred cCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCccc
Q 048772 162 NLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNH 241 (333)
Q Consensus 162 ~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~ 241 (333)
.|++|++++ +.++.+|. ++++++|+.|++++|. +..+|..++.|++|++|++.++.... +..+..|+.
T Consensus 442 ~L~~L~Ls~-n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~---------lp~l~~l~~ 509 (567)
T 1dce_A 442 DVRVLHLAH-KDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALEN---------VDGVANLPR 509 (567)
T ss_dssp TCSEEECTT-SCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCC---------CGGGTTCSS
T ss_pred CceEEEecC-CCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCC---------CcccCCCCC
Confidence 477777777 56777775 7777777777777776 56777777777777777776665443 124556666
Q ss_pred ccceeEEcccCCCCCchhhh-hhcCcccCCCCceEEEeccCC
Q 048772 242 LRGLLKIRMLGDLANVDEAK-HVDLKEKKNLDRLELWFDNVG 282 (333)
Q Consensus 242 L~~~L~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~ 282 (333)
|+. |++.+. ...+.. +..++.+++|+.|++++|...
T Consensus 510 L~~-L~Ls~N----~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 510 LQE-LLLCNN----RLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CCE-EECCSS----CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CcE-EECCCC----CCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 665 666542 222222 566777778888888777543
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=3.9e-13 Score=129.26 Aligned_cols=159 Identities=16% Similarity=0.202 Sum_probs=102.8
Q ss_pred hhhhHhhhcccccceE-eeccccccccCCCcch------Hhhc--ccccCeeeccCCcCcccchhhhccccCcEEeccCC
Q 048772 101 ELEDVFKQFTCLRALR-ICGENVWEIGNSKIPK------AMKN--LIHLRFLKLSWLRIKELPETCCELINLETLEINRC 171 (333)
Q Consensus 101 ~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~lp~------~~~~--l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~ 171 (333)
.++..+.++++|+.|+ ++.+.+ ..++. .+.. ...|++|++++|.++.+|. ++++++|++|++++
T Consensus 400 ~~~~~l~~l~~L~~L~~l~~n~~-----~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~- 472 (567)
T 1dce_A 400 YEKETLQYFSTLKAVDPMRAAYL-----DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSH- 472 (567)
T ss_dssp GHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCS-
T ss_pred CCHHHHHHHHhcccCcchhhccc-----chhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCc-
Confidence 4556667777777777 454433 22221 1111 1257888888888888886 88888888888888
Q ss_pred CCCCcCChhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEccc
Q 048772 172 TRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRML 251 (333)
Q Consensus 172 ~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~ 251 (333)
+.+..+|..+++|++|++|++++|. +..+| .++.|++|++|++.++.... ...+..+..|++|+. |++.+.
T Consensus 473 N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~------~~~p~~l~~l~~L~~-L~L~~N 543 (567)
T 1dce_A 473 NRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQ------SAAIQPLVSCPRLVL-LNLQGN 543 (567)
T ss_dssp SCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCS------SSTTGGGGGCTTCCE-EECTTS
T ss_pred ccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCC------CCCcHHHhcCCCCCE-EEecCC
Confidence 6677888888888888888888887 67777 78888888888887776554 111455666666775 666652
Q ss_pred CCCCCchhhhhhcCcccCCCCceEE
Q 048772 252 GDLANVDEAKHVDLKEKKNLDRLEL 276 (333)
Q Consensus 252 ~~~~~~~~~~~~~l~~l~~L~~L~l 276 (333)
.- ..........+..+++|+.|++
T Consensus 544 ~l-~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 544 SL-CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GG-GGSSSCTTHHHHHCTTCSEEEC
T ss_pred cC-CCCccHHHHHHHHCcccCccCC
Confidence 21 1111111122334677877753
No 109
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.40 E-value=3.3e-13 Score=126.48 Aligned_cols=98 Identities=20% Similarity=0.268 Sum_probs=62.0
Q ss_pred ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCe
Q 048772 110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRH 189 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~ 189 (333)
++|++|++++|.+ ..+|.. .++|++|++++|.++.+| .++++++|++|++++ +.+..+|..+ .+|++
T Consensus 111 ~~L~~L~l~~n~l-----~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~-N~l~~lp~~~---~~L~~ 177 (454)
T 1jl5_A 111 QSLKSLLVDNNNL-----KALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDN-NSLKKLPDLP---PSLEF 177 (454)
T ss_dssp TTCCEEECCSSCC-----SCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS-SCCSCCCCCC---TTCCE
T ss_pred CCCcEEECCCCcc-----CcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCC-CcCcccCCCc---ccccE
Confidence 4566666666655 333321 146777777777777776 477777777777777 5566666533 46777
Q ss_pred eecccccccccCchhhcCCCCCCccceEEeCCC
Q 048772 190 LIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRT 222 (333)
Q Consensus 190 L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~ 222 (333)
|++++|. +..+| .++.+++|++|++.++...
T Consensus 178 L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 178 IAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp EECCSSC-CSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred EECcCCc-CCcCc-cccCCCCCCEEECCCCcCC
Confidence 7777776 55666 4677777777776655443
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=2e-13 Score=124.16 Aligned_cols=151 Identities=18% Similarity=0.176 Sum_probs=83.5
Q ss_pred cceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchh-hh-ccccCcEEeccCCCCCCcCCh-hhhcCCCCCe
Q 048772 113 RALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPET-CC-ELINLETLEINRCTRLKRLPQ-GMEKLMNLRH 189 (333)
Q Consensus 113 ~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-i~-~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~ 189 (333)
++++++++.+ ..+|..+. ..+++|++++|.++.+|.. +. ++.+|++|++++ +.+..+|. .+.++++|++
T Consensus 21 ~~l~c~~~~l-----~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 21 NILSCSKQQL-----PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp TEEECCSSCC-----SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCS-SCCCEECTTTTTTCTTCCE
T ss_pred CEEEeCCCCc-----CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCC-CcCCccChhhccCCCCCCE
Confidence 4566666666 55555433 3466777777777666543 33 667777777776 55666553 4667777777
Q ss_pred eecccccccccCch-hhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCccc
Q 048772 190 LIIMNHVYLEYMPR-GIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEK 268 (333)
Q Consensus 190 L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l 268 (333)
|++++|. +..+|. .+..+++|++|++.++.... .....+..+++|+. |++.+..- ..........+..+
T Consensus 93 L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~-------~~~~~~~~l~~L~~-L~L~~N~l-~~l~~~~~~~~~~l 162 (361)
T 2xot_A 93 LDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVV-------VDRNAFEDMAQLQK-LYLSQNQI-SRFPVELIKDGNKL 162 (361)
T ss_dssp EECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCE-------ECTTTTTTCTTCCE-EECCSSCC-CSCCGGGTC----C
T ss_pred EECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccE-------ECHHHhCCcccCCE-EECCCCcC-CeeCHHHhcCcccC
Confidence 7777766 555554 36667777777766655443 12233444455554 55544211 11111111112567
Q ss_pred CCCCceEEEeccC
Q 048772 269 KNLDRLELWFDNV 281 (333)
Q Consensus 269 ~~L~~L~l~~~~~ 281 (333)
++|+.|+|+.|.+
T Consensus 163 ~~L~~L~L~~N~l 175 (361)
T 2xot_A 163 PKLMLLDLSSNKL 175 (361)
T ss_dssp TTCCEEECCSSCC
T ss_pred CcCCEEECCCCCC
Confidence 7888888887753
No 111
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.39 E-value=1.1e-12 Score=127.48 Aligned_cols=137 Identities=22% Similarity=0.242 Sum_probs=110.6
Q ss_pred hhhHHHHHHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccch-h
Q 048772 79 VFDEWITASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELPE-T 156 (333)
Q Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~ 156 (333)
++..+...++.+.+.+.. .....+..|.++++|++|++++|.+ ..+|+ .|.++++|++|+|++|.++.+|. .
T Consensus 46 vP~~lp~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i-----~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 46 IPDNLPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp CCSSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCC-----CEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred cCCCCCcCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcC-----CCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 344444456666665543 3333456789999999999999998 66654 58999999999999999999985 6
Q ss_pred hhccccCcEEeccCCCCCCcCCh-hhhcCCCCCeeecccccccc--cCchhhcCCCCCCccceEEeCCCC
Q 048772 157 CCELINLETLEINRCTRLKRLPQ-GMEKLMNLRHLIIMNHVYLE--YMPRGIERLTGLRTLSEFVVGRTG 223 (333)
Q Consensus 157 i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~l~~~~~l~--~~p~~i~~L~~L~~L~~~~~~~~~ 223 (333)
+++|++|++|++++ +.+..+|. .|++|++|++|++++|. +. .+|..++.+++|++|++.++....
T Consensus 120 f~~L~~L~~L~Ls~-N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 120 FSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp GTTCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred hcCCCCCCEEECCC-CcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccc
Confidence 89999999999999 67888876 48999999999999998 44 457789999999999998776543
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.39 E-value=3.2e-13 Score=122.91 Aligned_cols=195 Identities=13% Similarity=0.079 Sum_probs=105.5
Q ss_pred ccccceEeeccccccccCCCcchH----hhcc-cccCeeeccCCcCcccc-hhhhc-----cccCcEEeccCCCCCC---
Q 048772 110 TCLRALRICGENVWEIGNSKIPKA----MKNL-IHLRFLKLSWLRIKELP-ETCCE-----LINLETLEINRCTRLK--- 175 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~~----~~~l-~~L~~L~l~~~~i~~lp-~~i~~-----L~~L~~L~l~~~~~~~--- 175 (333)
+.|++|++++|.+. ...+.. +..+ ++|++|++++|.++..+ ..++. ..+|++|++++ +.++
T Consensus 80 ~~L~~L~Ls~n~l~----~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~ 154 (362)
T 3goz_A 80 ANVTSLNLSGNFLS----YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG-NDLGIKS 154 (362)
T ss_dssp TTCCEEECCSSCGG----GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT-SCGGGSC
T ss_pred CCccEEECcCCcCC----hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC-CcCCHHH
Confidence 67777777777762 122232 3333 67777777777766544 23322 24777777777 4444
Q ss_pred --cCChhhhcCC-CCCeeecccccccccC-ch----hhcCC-CCCCccceEEeCCCCCcccCcccchhhhcCc-ccccce
Q 048772 176 --RLPQGMEKLM-NLRHLIIMNHVYLEYM-PR----GIERL-TGLRTLSEFVVGRTGGEHASKVCKLEALKGM-NHLRGL 245 (333)
Q Consensus 176 --~lp~~~~~L~-~L~~L~l~~~~~l~~~-p~----~i~~L-~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L-~~L~~~ 245 (333)
.++..+..++ +|++|++++|. ++.. +. .+..+ ++|++|++.++.....+ .......+..+ +.|+.
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~---~~~l~~~l~~~~~~L~~- 229 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKS---YAELAYIFSSIPNHVVS- 229 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC---HHHHHHHHHHSCTTCCE-
T ss_pred HHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH---HHHHHHHHhcCCCCceE-
Confidence 3444455555 77777777776 3333 22 23444 47777777665543200 00112233332 35665
Q ss_pred eEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChh
Q 048772 246 LKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWI 322 (333)
Q Consensus 246 L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~ 322 (333)
|++.+..-.......+...+..+++|+.|++++|.... ........+.+.+.. +++|+.|++++|.+..
T Consensus 230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~-----i~~~~~~~l~~~~~~---l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKN-----MSKEQCKALGAAFPN---IQKIILVDKNGKEIHP 298 (362)
T ss_dssp EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTT-----CCHHHHHHHHTTSTT---CCEEEEECTTSCBCCG
T ss_pred EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccc-----cCHHHHHHHHHHhcc---CCceEEEecCCCcCCC
Confidence 66655332222223444556677778888888773211 112223334555556 7778888888877654
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=5.9e-13 Score=121.09 Aligned_cols=195 Identities=9% Similarity=0.078 Sum_probs=122.7
Q ss_pred hHhhhcc-cccceEeeccccccccCCCcchHhhcc-----cccCeeeccCCcCcccc-hhhhc----c-ccCcEEeccCC
Q 048772 104 DVFKQFT-CLRALRICGENVWEIGNSKIPKAMKNL-----IHLRFLKLSWLRIKELP-ETCCE----L-INLETLEINRC 171 (333)
Q Consensus 104 ~~~~~~~-~L~~L~l~~~~~~~~~~~~lp~~~~~l-----~~L~~L~l~~~~i~~lp-~~i~~----L-~~L~~L~l~~~ 171 (333)
..+..++ +|++|++++|.+. ...+..+..+ ++|++|++++|.++..+ ..++. + ++|++|++++
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~----~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~- 118 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLG----FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW- 118 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGG----GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS-
T ss_pred HHHHhCCCceeEEECcCCCCC----HHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcC-
Confidence 5667777 8999999999872 2224556554 88999999999887443 44443 3 7899999998
Q ss_pred CCCCcCCh-hh----hc-CCCCCeeecccccccc-----cCchhhcCCC-CCCccceEEeCCCCCcccCcccch-hhhcC
Q 048772 172 TRLKRLPQ-GM----EK-LMNLRHLIIMNHVYLE-----YMPRGIERLT-GLRTLSEFVVGRTGGEHASKVCKL-EALKG 238 (333)
Q Consensus 172 ~~~~~lp~-~~----~~-L~~L~~L~l~~~~~l~-----~~p~~i~~L~-~L~~L~~~~~~~~~~~~~~~~~~~-~~L~~ 238 (333)
+.++..+. .+ .. .++|++|++++|. ++ .++..+..++ +|++|++.++..... ....+ ..+..
T Consensus 119 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~----~~~~l~~~l~~ 193 (362)
T 3goz_A 119 NDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLASK----NCAELAKFLAS 193 (362)
T ss_dssp SCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS----CHHHHHHHHHT
T ss_pred CcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCCchh----hHHHHHHHHHh
Confidence 55666553 23 33 2589999999887 44 3445566665 888888877765430 11111 23344
Q ss_pred c-ccccceeEEcccCCCCCchhhhhhcCcc-cCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEe
Q 048772 239 M-NHLRGLLKIRMLGDLANVDEAKHVDLKE-KKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYS 316 (333)
Q Consensus 239 L-~~L~~~L~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~ 316 (333)
. +.|+. |++.+..-.......++..+.. .++|++|++++|....... .. +...+.. +++|+.|+++
T Consensus 194 ~~~~L~~-L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~----~~----l~~~~~~---l~~L~~L~L~ 261 (362)
T 3goz_A 194 IPASVTS-LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL----EN----LKLLKDS---LKHLQTVYLD 261 (362)
T ss_dssp SCTTCCE-EECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH----HH----HHHTTTT---TTTCSEEEEE
T ss_pred CCCCCCE-EECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH----HH----HHHHHhc---CCCccEEEec
Confidence 4 46776 7777643211222335555655 3589999998885433211 11 3344456 7789999998
Q ss_pred eecC
Q 048772 317 RYGI 320 (333)
Q Consensus 317 ~~~~ 320 (333)
+|..
T Consensus 262 ~n~l 265 (362)
T 3goz_A 262 YDIV 265 (362)
T ss_dssp HHHH
T ss_pred cCCc
Confidence 8873
No 114
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.38 E-value=9.2e-14 Score=130.24 Aligned_cols=168 Identities=18% Similarity=0.137 Sum_probs=86.2
Q ss_pred hhhHhhhcccccceEeeccccccccCCCcchHhh-cccccCeeeccCCcCcc-----cchhhhccccCcEEeccCCCCCC
Q 048772 102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMK-NLIHLRFLKLSWLRIKE-----LPETCCELINLETLEINRCTRLK 175 (333)
Q Consensus 102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~-~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~~~ 175 (333)
++..+..+++|++|++++|.+.+.+...+...+. ..++|++|++++|.++. +|..+..+++|++|++++ +.+.
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~ 240 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS-NKLG 240 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS-SBCH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC-CcCC
Confidence 3445556667777777776652110011111111 24467777777766654 456666667777777776 3343
Q ss_pred cC-----Chh-hhcCCCCCeeeccccccccc-----CchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcC-----c
Q 048772 176 RL-----PQG-MEKLMNLRHLIIMNHVYLEY-----MPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKG-----M 239 (333)
Q Consensus 176 ~l-----p~~-~~~L~~L~~L~l~~~~~l~~-----~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~-----L 239 (333)
.. +.. +..+++|++|++++|. ++. +|..+.++++|++|++.++.... ..+..+.. .
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-------~~~~~l~~~l~~~~ 312 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGD-------EGARLLCETLLEPG 312 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHH-------HHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCch-------HHHHHHHHHhccCC
Confidence 21 111 2246677777777765 444 55556667777777766554322 11111111 1
Q ss_pred ccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEec
Q 048772 240 NHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFD 279 (333)
Q Consensus 240 ~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 279 (333)
+.|+. |++.+..-.......++..+..+++|++|++++|
T Consensus 313 ~~L~~-L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 313 CQLES-LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp CCCCE-EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred cccee-eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 34554 5555433211122234455566677777777665
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=1.6e-12 Score=109.88 Aligned_cols=105 Identities=18% Similarity=0.269 Sum_probs=59.2
Q ss_pred cccceEeeccccccccCCCcc--hHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCChh-hhcCCC
Q 048772 111 CLRALRICGENVWEIGNSKIP--KAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQG-MEKLMN 186 (333)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~ 186 (333)
.+++|++++|.+ ..++ ..+..+++|++|++++|.++.+|. .++++++|++|++++ +.+..+|.. +..+++
T Consensus 33 ~~~~L~L~~N~l-----~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~ 106 (220)
T 2v70_A 33 YTAELRLNNNEF-----TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS-NRLENVQHKMFKGLES 106 (220)
T ss_dssp TCSEEECCSSCC-----CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCGGGGTTCSS
T ss_pred CCCEEEcCCCcC-----CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC-CccCccCHhHhcCCcC
Confidence 345666666665 3332 225556666666666666665553 556666666666666 445555433 556666
Q ss_pred CCeeecccccccccC-chhhcCCCCCCccceEEeCCC
Q 048772 187 LRHLIIMNHVYLEYM-PRGIERLTGLRTLSEFVVGRT 222 (333)
Q Consensus 187 L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~ 222 (333)
|++|++++|. +..+ |..++.+++|++|++.++...
T Consensus 107 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 107 LKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp CCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred CCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCC
Confidence 6666666665 3333 344666666666666555443
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=7.1e-13 Score=107.96 Aligned_cols=106 Identities=23% Similarity=0.282 Sum_probs=84.5
Q ss_pred hhcccccceEeeccccccccCCCcchHhhccc-ccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhh-hcC
Q 048772 107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLI-HLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGM-EKL 184 (333)
Q Consensus 107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~-~~L 184 (333)
.+++.|++|++++|.+ ..+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++ +.+..+|..+ +.+
T Consensus 16 ~~~~~L~~L~l~~n~l-----~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKI-----PVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNN-NRICRIGEGLDQAL 87 (176)
T ss_dssp ECTTSCEEEECTTSCC-----CSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCS-SCCCEECSCHHHHC
T ss_pred CCcCCceEEEeeCCCC-----chhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCC-CcccccCcchhhcC
Confidence 4567889999999988 56654 55554 899999999998887 5788899999999998 6788888665 889
Q ss_pred CCCCeeecccccccccCch--hhcCCCCCCccceEEeCC
Q 048772 185 MNLRHLIIMNHVYLEYMPR--GIERLTGLRTLSEFVVGR 221 (333)
Q Consensus 185 ~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~ 221 (333)
++|++|++++|. +..+|. .++.+++|++|++.++..
T Consensus 88 ~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 88 PDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp TTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred CCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC
Confidence 999999999987 677776 678888888888765543
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=1.7e-13 Score=135.56 Aligned_cols=113 Identities=20% Similarity=0.127 Sum_probs=92.4
Q ss_pred CCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhcC
Q 048772 128 SKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIER 207 (333)
Q Consensus 128 ~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~ 207 (333)
...|..+..++.|+.|+|++|.+..+|..++++++|++|+|++ +.+..+|..|++|++|++|++++|. +..+|..++.
T Consensus 214 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~ 291 (727)
T 4b8c_D 214 VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNG-NSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGS 291 (727)
T ss_dssp --------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTT-SCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGG
T ss_pred ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeC-CcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcC
Confidence 3446678899999999999999999999999999999999999 7788999999999999999999999 7799999999
Q ss_pred CCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEccc
Q 048772 208 LTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRML 251 (333)
Q Consensus 208 L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~ 251 (333)
|++|++|++.++.... .+..+..|++|+. |++.+.
T Consensus 292 l~~L~~L~L~~N~l~~--------lp~~~~~l~~L~~-L~L~~N 326 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTT--------LPWEFGNLCNLQF-LGVEGN 326 (727)
T ss_dssp GTTCSEEECCSSCCCC--------CCSSTTSCTTCCC-EECTTS
T ss_pred CCCCCEEECCCCCCCc--------cChhhhcCCCccE-EeCCCC
Confidence 9999999998876543 2334667777776 777763
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=1.2e-12 Score=106.53 Aligned_cols=110 Identities=20% Similarity=0.211 Sum_probs=95.0
Q ss_pred hhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhh-hccccCcEEeccCCCCCCcCCh--
Q 048772 103 EDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETC-CELINLETLEINRCTRLKRLPQ-- 179 (333)
Q Consensus 103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i-~~L~~L~~L~l~~~~~~~~lp~-- 179 (333)
+.+....++|++|++++|.+ ..+ ..+..+++|++|++++|.++.+|..+ +.+++|++|++++ +.+..+|.
T Consensus 35 ~~~~~~~~~L~~L~Ls~N~l-----~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~ 107 (176)
T 1a9n_A 35 ENLGATLDQFDAIDFSDNEI-----RKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN-NSLVELGDLD 107 (176)
T ss_dssp CCGGGGTTCCSEEECCSSCC-----CEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS-CCCCCGGGGG
T ss_pred HHhhhcCCCCCEEECCCCCC-----Ccc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC-CcCCcchhhH
Confidence 44333345999999999998 555 56889999999999999999998655 9999999999999 77899987
Q ss_pred hhhcCCCCCeeecccccccccCchh----hcCCCCCCccceEEeC
Q 048772 180 GMEKLMNLRHLIIMNHVYLEYMPRG----IERLTGLRTLSEFVVG 220 (333)
Q Consensus 180 ~~~~L~~L~~L~l~~~~~l~~~p~~----i~~L~~L~~L~~~~~~ 220 (333)
.++.+++|++|++++|. +..+|.. ++.+++|+.|++..+.
T Consensus 108 ~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 108 PLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp GGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 79999999999999998 7788875 8999999999988765
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.33 E-value=1.2e-12 Score=122.65 Aligned_cols=97 Identities=21% Similarity=0.286 Sum_probs=70.5
Q ss_pred ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCe
Q 048772 110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRH 189 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~ 189 (333)
++|++|++++|.+ ..+| .++.+++|++|++++|.++.+|..+ .+|++|++++ +.+..+| +++++++|++
T Consensus 131 ~~L~~L~L~~n~l-----~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~-n~l~~l~-~~~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNNQL-----EKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGN-NQLEELP-ELQNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSSCC-----SSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCS-SCCSSCC-CCTTCTTCCE
T ss_pred CCCCEEECcCCCC-----CCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcC-CcCCcCc-cccCCCCCCE
Confidence 5788888888887 5677 5888888888888888888777643 4788888887 5677777 5778888888
Q ss_pred eecccccccccCchhhcCCCCCCccceEEeCC
Q 048772 190 LIIMNHVYLEYMPRGIERLTGLRTLSEFVVGR 221 (333)
Q Consensus 190 L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~ 221 (333)
|++++|. +..+|... ++|++|++.++..
T Consensus 200 L~l~~N~-l~~l~~~~---~~L~~L~l~~n~l 227 (454)
T 1jl5_A 200 IYADNNS-LKKLPDLP---LSLESIVAGNNIL 227 (454)
T ss_dssp EECCSSC-CSSCCCCC---TTCCEEECCSSCC
T ss_pred EECCCCc-CCcCCCCc---CcccEEECcCCcC
Confidence 8887776 55555432 3566666655543
No 120
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.33 E-value=1.4e-13 Score=128.91 Aligned_cols=197 Identities=15% Similarity=0.109 Sum_probs=123.0
Q ss_pred hhhhHhhhcccccceEeeccccccccCCCcchHh-hccc----ccCeeeccCCcCc-----ccchhhhccccCcEEeccC
Q 048772 101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAM-KNLI----HLRFLKLSWLRIK-----ELPETCCELINLETLEINR 170 (333)
Q Consensus 101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~-~~l~----~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~ 170 (333)
.++..+..+++|++|++++|.+. ...+..+ ..++ +|++|++++|.++ .+|..+.++++|++|++++
T Consensus 47 ~l~~~l~~~~~L~~L~Ls~n~l~----~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 122 (461)
T 1z7x_W 47 DISSALRVNPALAELNLRSNELG----DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122 (461)
T ss_dssp HHHHHHHTCTTCCEEECTTCCCH----HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS
T ss_pred HHHHHHHhCCCcCEEeCCCCcCC----hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCC
Confidence 45566777788888888888762 1112233 3344 5888888888876 4577788888888888888
Q ss_pred CCCCCcC-Chhhh-----cCCCCCeeeccccccccc-----CchhhcCCCCCCccceEEeCCCCCcccCcccchhhhc--
Q 048772 171 CTRLKRL-PQGME-----KLMNLRHLIIMNHVYLEY-----MPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALK-- 237 (333)
Q Consensus 171 ~~~~~~l-p~~~~-----~L~~L~~L~l~~~~~l~~-----~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~-- 237 (333)
+.+... +..+. ..++|++|++++|. +.. ++..+..+++|++|++.++.... ..+..+.
T Consensus 123 -n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-------~~~~~l~~~ 193 (461)
T 1z7x_W 123 -NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDINE-------AGVRVLCQG 193 (461)
T ss_dssp -SBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCHH-------HHHHHHHHH
T ss_pred -CcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcch-------HHHHHHHHH
Confidence 445421 22222 24578888888886 332 35557778888888887665432 2222222
Q ss_pred ---CcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhc-cCCCCCCCceee
Q 048772 238 ---GMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSV-RVCLLWDNCHPL 313 (333)
Q Consensus 238 ---~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~L~~L 313 (333)
.++.|+. |++.+..-.......++..+..+++|++|++++|.. + ......+...+ .+ +++|++|
T Consensus 194 l~~~~~~L~~-L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-----~---~~~~~~l~~~~~~~---~~~L~~L 261 (461)
T 1z7x_W 194 LKDSPCQLEA-LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL-----G---DVGMAELCPGLLHP---SSRLRTL 261 (461)
T ss_dssp HHHSCCCCCE-EECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC-----H---HHHHHHHHHHHTST---TCCCCEE
T ss_pred HhcCCCCceE-EEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC-----C---hHHHHHHHHHHhcC---CCCceEE
Confidence 2446665 777764332222334566777889999999987742 1 11111133333 35 7889999
Q ss_pred EEeeecChh
Q 048772 314 KYSRYGIWI 322 (333)
Q Consensus 314 ~l~~~~~~~ 322 (333)
++++|.+..
T Consensus 262 ~L~~n~l~~ 270 (461)
T 1z7x_W 262 WIWECGITA 270 (461)
T ss_dssp ECTTSCCCH
T ss_pred ECcCCCCCH
Confidence 999987754
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=3.7e-12 Score=105.40 Aligned_cols=105 Identities=26% Similarity=0.390 Sum_probs=85.0
Q ss_pred ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hhhcCCCC
Q 048772 110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GMEKLMNL 187 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L 187 (333)
+.|++|++++|.+ ..+|..+..+++|++|++++|.++.++ ..+.++++|++|++++ +.+..+|. .+..+++|
T Consensus 31 ~~l~~L~L~~n~i-----~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGNQF-----TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSSCC-----CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTC
T ss_pred CCCCEEECCCCcC-----chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-CccCEeCHHHhCCCCCC
Confidence 5788888888888 677878888888888998888888776 4688888888898888 66777764 58888888
Q ss_pred CeeecccccccccCchh-hcCCCCCCccceEEeCC
Q 048772 188 RHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGR 221 (333)
Q Consensus 188 ~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~ 221 (333)
++|++++|. +..+|.. +..+++|++|++.++..
T Consensus 105 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 105 RLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 888888887 6777764 77888888888876654
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=1.1e-12 Score=119.38 Aligned_cols=155 Identities=18% Similarity=0.181 Sum_probs=95.3
Q ss_pred ccccceEeeccccccccCCCcchH-hh-cccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hhhcCC
Q 048772 110 TCLRALRICGENVWEIGNSKIPKA-MK-NLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GMEKLM 185 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~~-~~-~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~ 185 (333)
+.++.|++++|.+ ..++.. +. .+++|++|++++|.++.+| ..+.++++|++|+|++ +.+..+|. .+.+++
T Consensus 39 ~~l~~L~Ls~N~l-----~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~ 112 (361)
T 2xot_A 39 SYTALLDLSHNNL-----SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS-NHLHTLDEFLFSDLQ 112 (361)
T ss_dssp TTCSEEECCSSCC-----CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCT
T ss_pred CCCCEEECCCCCC-----CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC-CcCCcCCHHHhCCCc
Confidence 3477788888877 555443 34 6788888888888887776 4577888888888887 56776654 467788
Q ss_pred CCCeeecccccccccC-chhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772 186 NLRHLIIMNHVYLEYM-PRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD 264 (333)
Q Consensus 186 ~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~ 264 (333)
+|++|++++|. +..+ |..++.+++|++|++.++.... .....+..+..+++|+. |++.+.. ....-...
T Consensus 113 ~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~----l~~~~~~~~~~l~~L~~-L~L~~N~----l~~l~~~~ 182 (361)
T 2xot_A 113 ALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISR----FPVELIKDGNKLPKLML-LDLSSNK----LKKLPLTD 182 (361)
T ss_dssp TCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCS----CCGGGTC----CTTCCE-EECCSSC----CCCCCHHH
T ss_pred CCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCe----eCHHHhcCcccCCcCCE-EECCCCC----CCccCHHH
Confidence 88888888877 4444 4557788888888877766544 11112222245566665 6665421 11111223
Q ss_pred CcccCC--CCceEEEecc
Q 048772 265 LKEKKN--LDRLELWFDN 280 (333)
Q Consensus 265 l~~l~~--L~~L~l~~~~ 280 (333)
+..++. |+.|+|+.|.
T Consensus 183 ~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHHSCHHHHTTEECCSSC
T ss_pred hhhccHhhcceEEecCCC
Confidence 444444 3667777554
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=2.4e-13 Score=113.01 Aligned_cols=113 Identities=24% Similarity=0.312 Sum_probs=100.3
Q ss_pred hhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCCh
Q 048772 100 KELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQ 179 (333)
Q Consensus 100 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~ 179 (333)
..++..+..++.|++|++++|.+ ..+| .+..+++|++|++++|.++.+|..++.+++|++|++++ +.+..+|
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l-----~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~-N~l~~l~- 109 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNI-----EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLS- 109 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEE-----SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE-EECCCHH-
T ss_pred hhhhHHHhcCCCCCEEECCCCCC-----cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC-CcCCcCC-
Confidence 44566889999999999999998 6788 89999999999999999999999999999999999999 6788887
Q ss_pred hhhcCCCCCeeecccccccccCch--hhcCCCCCCccceEEeCC
Q 048772 180 GMEKLMNLRHLIIMNHVYLEYMPR--GIERLTGLRTLSEFVVGR 221 (333)
Q Consensus 180 ~~~~L~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~ 221 (333)
.++++++|++|++++|. +..+|. .++.+++|++|++.++..
T Consensus 110 ~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 69999999999999998 777664 689999999999876643
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=5.2e-12 Score=104.36 Aligned_cols=106 Identities=18% Similarity=0.255 Sum_probs=70.8
Q ss_pred cccceEeeccccccccCCCcchH--hhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCCh-hhhcCCC
Q 048772 111 CLRALRICGENVWEIGNSKIPKA--MKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQ-GMEKLMN 186 (333)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~lp~~--~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~ 186 (333)
.+++|++++|.+ ..+|.. +..+++|++|++++|.++.+ |..++++++|++|++++ +.+..+|. .+.++++
T Consensus 30 ~l~~L~l~~n~i-----~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~ 103 (192)
T 1w8a_A 30 HTTELLLNDNEL-----GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQ 103 (192)
T ss_dssp TCSEEECCSCCC-----CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTT
T ss_pred CCCEEECCCCcC-----CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-CcCCccCHHHhcCCCC
Confidence 677777777776 455442 66777777777777777755 56677777777777777 55665544 3667777
Q ss_pred CCeeecccccccccCchhhcCCCCCCccceEEeCCC
Q 048772 187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRT 222 (333)
Q Consensus 187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~ 222 (333)
|++|++++|......|..++.+++|++|++.++...
T Consensus 104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 777777777633334556777777777777655543
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=1.1e-11 Score=102.57 Aligned_cols=102 Identities=19% Similarity=0.288 Sum_probs=86.8
Q ss_pred cceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCCh-hhhcCCCCCeee
Q 048772 113 RALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQ-GMEKLMNLRHLI 191 (333)
Q Consensus 113 ~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~ 191 (333)
++++++++.+ ..+|..+. +.|++|++++|.++.+|..+.++++|++|++++ +.+..++. .|.++++|++|+
T Consensus 13 ~~l~~~~~~l-----~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGL-----KVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTSCC-----SSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCC-----CcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEE
Confidence 5788889888 77776553 589999999999999999999999999999999 77888764 589999999999
Q ss_pred cccccccccCch-hhcCCCCCCccceEEeCCCC
Q 048772 192 IMNHVYLEYMPR-GIERLTGLRTLSEFVVGRTG 223 (333)
Q Consensus 192 l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~ 223 (333)
+++|. +..+|. .++.+++|++|++.++....
T Consensus 85 Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 85 LSYNR-LRCIPPRTFDGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp CCSSC-CCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCc-cCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence 99998 677765 58999999999988776543
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=7.4e-12 Score=103.42 Aligned_cols=121 Identities=18% Similarity=0.266 Sum_probs=96.8
Q ss_pred cceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchh--hhccccCcEEeccCCCCCCcC-ChhhhcCCCCCe
Q 048772 113 RALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPET--CCELINLETLEINRCTRLKRL-PQGMEKLMNLRH 189 (333)
Q Consensus 113 ~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~--i~~L~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~ 189 (333)
++++++++.+ ..+|..+.. +|++|++++|.++.+|.. ++++++|++|++++ +.+..+ |..+.++++|++
T Consensus 11 ~~l~~s~~~l-----~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGL-----KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCC-----SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCCE
T ss_pred CEEEcCCCCc-----CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCC-CCCCCcCHhHcCCcccCCE
Confidence 7889999988 777876543 899999999999988864 89999999999999 667766 678999999999
Q ss_pred eecccccccccCch-hhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcc
Q 048772 190 LIIMNHVYLEYMPR-GIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRM 250 (333)
Q Consensus 190 L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~ 250 (333)
|++++|. +..+|. .++.+++|++|++.++.... .....+..+++|+. |++.+
T Consensus 83 L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~-L~L~~ 135 (192)
T 1w8a_A 83 LQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISC-------VMPGSFEHLNSLTS-LNLAS 135 (192)
T ss_dssp EECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCE-------ECTTSSTTCTTCCE-EECTT
T ss_pred EECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCe-------eCHHHhhcCCCCCE-EEeCC
Confidence 9999998 666654 48899999999998877654 22344556666775 76665
No 127
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.25 E-value=7.6e-12 Score=120.87 Aligned_cols=93 Identities=11% Similarity=0.083 Sum_probs=60.2
Q ss_pred hhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-----ccchhhhccccCcEEeccCCCCCC
Q 048772 101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-----ELPETCCELINLETLEINRCTRLK 175 (333)
Q Consensus 101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~ 175 (333)
.+......+++|++|++++|.+.+.+...++.....+++|+.|++++|.++ .++..+.++++|++|++++ +.+.
T Consensus 155 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~-~~~~ 233 (592)
T 3ogk_B 155 GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD-FEIL 233 (592)
T ss_dssp HHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS-CBGG
T ss_pred HHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC-ccHH
Confidence 345555678889999998887632211114445566777888888777764 4455566777788888777 4455
Q ss_pred cCChhhhcCCCCCeeeccc
Q 048772 176 RLPQGMEKLMNLRHLIIMN 194 (333)
Q Consensus 176 ~lp~~~~~L~~L~~L~l~~ 194 (333)
.+|..+.++++|++|+++.
T Consensus 234 ~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 234 ELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp GGHHHHHHCTTCCEEEECB
T ss_pred HHHHHHhhhhHHHhhcccc
Confidence 5666666666666666653
No 128
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.23 E-value=1.5e-11 Score=99.95 Aligned_cols=103 Identities=23% Similarity=0.368 Sum_probs=87.4
Q ss_pred ccceEeeccccccccCCCcchHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChh-hhcCCCCCe
Q 048772 112 LRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQG-MEKLMNLRH 189 (333)
Q Consensus 112 L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~ 189 (333)
-+.++++++.+ ..+|..+. ++|++|++++|.++.+ |..++++++|++|+|++ +.+..+|.. +.++++|++
T Consensus 14 ~~~l~~~~n~l-----~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 14 QTLVNCQNIRL-----ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SSEEECCSSCC-----SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCE
T ss_pred CcEEEeCCCCC-----CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhE
Confidence 36788999988 77787654 7899999999999987 46789999999999999 788989876 578999999
Q ss_pred eecccccccccCchh-hcCCCCCCccceEEeCCCC
Q 048772 190 LIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTG 223 (333)
Q Consensus 190 L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~ 223 (333)
|++++|. +..+|.. ++.+++|++|++.++....
T Consensus 86 L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 86 LDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred EECCCCc-cceeCHHHhccccCCCEEEeCCCCccc
Confidence 9999998 7888876 8899999999998776543
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.23 E-value=2.9e-12 Score=115.99 Aligned_cols=101 Identities=19% Similarity=0.190 Sum_probs=55.7
Q ss_pred ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCc-ccch-hhhccccCcEEeccCCCCCCcCC-hhhhcCC
Q 048772 110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIK-ELPE-TCCELINLETLEINRCTRLKRLP-QGMEKLM 185 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~-~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~~~~L~ 185 (333)
++++.|++++|++ ..+|. .|.++++|++|++++|.+. .+|. .+.++++|+.+....++.+..+| ..+..++
T Consensus 30 ~~l~~L~Ls~N~i-----~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELRFVLTKL-----RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP 104 (350)
T ss_dssp TTCSEEEEESCCC-----SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCT
T ss_pred CCCCEEEccCCcC-----CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcc
Confidence 4566666666666 55554 3566666777777666653 3442 45566665554333335566553 3456666
Q ss_pred CCCeeecccccccccCchh-hcCCCCCCccce
Q 048772 186 NLRHLIIMNHVYLEYMPRG-IERLTGLRTLSE 216 (333)
Q Consensus 186 ~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~ 216 (333)
+|++|++++|. +..+|.. +.....+..|++
T Consensus 105 ~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 105 NLQYLLISNTG-IKHLPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp TCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEE
T ss_pred ccccccccccc-cccCCchhhcccchhhhhhh
Confidence 66666666665 4444432 233333444444
No 130
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.21 E-value=1.1e-11 Score=119.66 Aligned_cols=106 Identities=12% Similarity=0.047 Sum_probs=75.1
Q ss_pred ccc-ccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcc-----cchhhhccccCcEEeccCCCCCC-----cC
Q 048772 109 FTC-LRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKE-----LPETCCELINLETLEINRCTRLK-----RL 177 (333)
Q Consensus 109 ~~~-L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~~~-----~l 177 (333)
++. |++|++++|... ....++.....+++|++|++++|.++. ++..+.++++|++|++++ +.+. .+
T Consensus 136 ~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~-n~~~~~~~~~l 212 (592)
T 3ogk_B 136 RADDLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYM-TEFAKISPKDL 212 (592)
T ss_dssp HGGGCCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTT-CCCSSCCHHHH
T ss_pred ccccCcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeec-cCCCccCHHHH
Confidence 344 888888777531 112334444577888888888887542 445566788888888887 4454 34
Q ss_pred ChhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEE
Q 048772 178 PQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFV 218 (333)
Q Consensus 178 p~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~ 218 (333)
+..+.++++|++|++++|. +..+|..++.+++|++|++..
T Consensus 213 ~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECB
T ss_pred HHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccc
Confidence 5556788999999999987 667887888889999888864
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=2.5e-11 Score=98.18 Aligned_cols=104 Identities=23% Similarity=0.385 Sum_probs=87.9
Q ss_pred cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChh-hhcCCCCC
Q 048772 111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQG-MEKLMNLR 188 (333)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L~ 188 (333)
..++++++++.+ ..+|..+. ++|++|++++|.++.+ |..++++++|++|++++ +.+..+|.. +.++++|+
T Consensus 10 ~~~~l~~s~n~l-----~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSGKSL-----ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp ETTEEECTTSCC-----SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEeCCCCc-----CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCC
Confidence 457899999988 77786653 7899999999999988 56789999999999999 778888876 58999999
Q ss_pred eeecccccccccCchh-hcCCCCCCccceEEeCCCC
Q 048772 189 HLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTG 223 (333)
Q Consensus 189 ~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~ 223 (333)
+|++++|. +..+|.. ++.+++|++|++.++....
T Consensus 82 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 82 QLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred EEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 99999998 7788765 8899999999998776543
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=5e-11 Score=96.90 Aligned_cols=106 Identities=26% Similarity=0.450 Sum_probs=83.2
Q ss_pred ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccchh-hhccccCcEEeccCCCCCCcCChh-hhcCCC
Q 048772 110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELPET-CCELINLETLEINRCTRLKRLPQG-MEKLMN 186 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~ 186 (333)
+.|++|++++|.+ ..+|. .+..+++|++|++++|.++.+|.. ++.+++|++|++++ +.++.+|.. +..+++
T Consensus 28 ~~l~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~ 101 (177)
T 2o6r_A 28 SSATRLELESNKL-----QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNGVFDKLTQ 101 (177)
T ss_dssp TTCSEEECCSSCC-----CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred CCCcEEEeCCCcc-----cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC-CCccccCHHHhhCCcc
Confidence 6788888888887 55554 457888899999998888888754 58888999999988 667777764 678888
Q ss_pred CCeeecccccccccCchh-hcCCCCCCccceEEeCCC
Q 048772 187 LRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRT 222 (333)
Q Consensus 187 L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~ 222 (333)
|++|++++|. +..+|.. +..+++|++|++.++...
T Consensus 102 L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 102 LKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 9999998887 6777766 577888888888766544
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=1.6e-10 Score=93.82 Aligned_cols=103 Identities=22% Similarity=0.400 Sum_probs=83.8
Q ss_pred cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCChh-hhcCCCCC
Q 048772 111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQG-MEKLMNLR 188 (333)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L~ 188 (333)
..+.++++++++ ..+|..+ .++|+.|++++|.++.+|. .++++++|++|++++ +.+..+|.. ++.+++|+
T Consensus 8 ~~~~l~~~~~~l-----~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 8 SGTEIRCNSKGL-----TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLT 79 (177)
T ss_dssp ETTEEECCSSCC-----SSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEecCCCC-----ccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCC-CcceEeChhHccCCCccC
Confidence 356788888888 6777544 3689999999999998885 468999999999999 678888765 68999999
Q ss_pred eeecccccccccCchh-hcCCCCCCccceEEeCCC
Q 048772 189 HLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRT 222 (333)
Q Consensus 189 ~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~ 222 (333)
+|++++|. +..+|.. ++.+++|++|++.++...
T Consensus 80 ~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 80 ILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred EEECCCCC-ccccCHHHhhCCcccCEEECcCCcce
Confidence 99999998 6777765 688999999988766544
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=1.6e-10 Score=93.75 Aligned_cols=90 Identities=24% Similarity=0.456 Sum_probs=78.1
Q ss_pred ccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccchh-hhccccCcEEeccCCCCCCcCChh-hhcCCC
Q 048772 110 TCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPET-CCELINLETLEINRCTRLKRLPQG-MEKLMN 186 (333)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~ 186 (333)
+.|++|++++|.+ ..+ |..+..+++|++|++++|.++.+|.. ++++++|++|++++ +.+..+|.. +.++++
T Consensus 33 ~~L~~L~Ls~N~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~ 106 (174)
T 2r9u_A 33 TDKQRLWLNNNQI-----TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKS 106 (174)
T ss_dssp TTCSEEECCSSCC-----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred CCCcEEEeCCCCc-----cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccC
Confidence 7899999999998 555 56789999999999999999999965 58999999999999 789999876 899999
Q ss_pred CCeeecccccccccCchhhc
Q 048772 187 LRHLIIMNHVYLEYMPRGIE 206 (333)
Q Consensus 187 L~~L~l~~~~~l~~~p~~i~ 206 (333)
|++|++++|. +.-.|..+.
T Consensus 107 L~~L~L~~N~-~~c~~~~~~ 125 (174)
T 2r9u_A 107 LTHIYLYNNP-WDCECRDIM 125 (174)
T ss_dssp CSEEECCSSC-BCTTBGGGH
T ss_pred CCEEEeCCCC-cccccccHH
Confidence 9999999998 565554443
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.08 E-value=1.9e-10 Score=104.02 Aligned_cols=104 Identities=18% Similarity=0.230 Sum_probs=83.2
Q ss_pred cceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCCh-hhhcCCCCCee
Q 048772 113 RALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQ-GMEKLMNLRHL 190 (333)
Q Consensus 113 ~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L 190 (333)
++++.+++++ ..+|..+ .++++.|+|++|.|+.+|. .+.++++|++|+|++|...+.+|. .|.+|++|+.+
T Consensus 12 ~~v~C~~~~L-----t~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESKV-----TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTTC-----CSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred CEEEecCCCC-----CccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence 6778888888 7788766 3679999999999999995 689999999999999444466765 47889998876
Q ss_pred ecccccccccCch-hhcCCCCCCccceEEeCCCC
Q 048772 191 IIMNHVYLEYMPR-GIERLTGLRTLSEFVVGRTG 223 (333)
Q Consensus 191 ~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~ 223 (333)
...++..+..+|. .++.+++|++|++.++....
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred hcccCCcccccCchhhhhcccccccccccccccc
Confidence 5554444777764 58999999999999987654
No 136
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.03 E-value=5.5e-11 Score=114.80 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=65.7
Q ss_pred hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcc-----cchhhhccccCcEEeccCCC-CCC--cCC
Q 048772 107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKE-----LPETCCELINLETLEINRCT-RLK--RLP 178 (333)
Q Consensus 107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~-~~~--~lp 178 (333)
..+++|++|++++|..+ +...++..+..+++|++|++++|.++. ++.....+++|++|++++|. .+. .++
T Consensus 127 ~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 127 KSFKNFKVLVLSSCEGF--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHCTTCCEEEEESCEEE--EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HhCCCCcEEeCCCcCCC--CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 35777888888777321 112244445567788888888777542 23333356678888887743 111 122
Q ss_pred hhhhcCCCCCeeecccccccccCchhhcCCCCCCccceE
Q 048772 179 QGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEF 217 (333)
Q Consensus 179 ~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~ 217 (333)
.-+.++++|++|++++|..+..+|..+..+++|++|.+.
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 223456788888888775455566667777777777643
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.02 E-value=2.2e-10 Score=110.57 Aligned_cols=92 Identities=20% Similarity=0.242 Sum_probs=59.4
Q ss_pred hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCc--Cc--ccchhhhccccCcEEeccCCCCCCcC
Q 048772 102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR--IK--ELPETCCELINLETLEINRCTRLKRL 177 (333)
Q Consensus 102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~--i~--~lp~~i~~L~~L~~L~l~~~~~~~~l 177 (333)
++.++.++++|++|++++|.+.+.+...++.....+++|+.|++++|. +. .++..+.++++|++|++++|..+..+
T Consensus 148 l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l 227 (594)
T 2p1m_B 148 LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL 227 (594)
T ss_dssp HHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH
T ss_pred HHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH
Confidence 566667899999999999986322212233333467788888888876 22 23334456788888888886555555
Q ss_pred ChhhhcCCCCCeeecc
Q 048772 178 PQGMEKLMNLRHLIIM 193 (333)
Q Consensus 178 p~~~~~L~~L~~L~l~ 193 (333)
|..+.++++|++|+++
T Consensus 228 ~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 228 ATLLQRAPQLEELGTG 243 (594)
T ss_dssp HHHHHHCTTCSEEECS
T ss_pred HHHHhcCCcceEcccc
Confidence 5555566666666543
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.97 E-value=1.3e-09 Score=88.03 Aligned_cols=82 Identities=27% Similarity=0.474 Sum_probs=73.3
Q ss_pred cccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccchh-hhccccCcEEeccCCCCCCcCChh-hhcCC
Q 048772 109 FTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPET-CCELINLETLEINRCTRLKRLPQG-MEKLM 185 (333)
Q Consensus 109 ~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~ 185 (333)
.+.|++|++++|.+ ..+ |..+..+++|++|++++|.++.+|.. +..+++|++|++++ +.+..+|.. +.+++
T Consensus 29 ~~~l~~L~L~~N~i-----~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 102 (170)
T 3g39_A 29 PTTTQVLYLYDNQI-----TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLK 102 (170)
T ss_dssp CTTCSEEECCSSCC-----CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCT
T ss_pred CCCCcEEEcCCCcC-----CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-CccCEeCHHHhcCCC
Confidence 37899999999999 555 56689999999999999999999865 58999999999999 789988875 88999
Q ss_pred CCCeeeccccc
Q 048772 186 NLRHLIIMNHV 196 (333)
Q Consensus 186 ~L~~L~l~~~~ 196 (333)
+|++|++++|.
T Consensus 103 ~L~~L~L~~N~ 113 (170)
T 3g39_A 103 SLTHIWLLNNP 113 (170)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 99999999997
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.93 E-value=1.4e-09 Score=98.07 Aligned_cols=90 Identities=16% Similarity=0.089 Sum_probs=43.8
Q ss_pred CCcchHhhcccccCeeeccC-CcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hhhcCCCCCeeecccccccccCchh
Q 048772 128 SKIPKAMKNLIHLRFLKLSW-LRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GMEKLMNLRHLIIMNHVYLEYMPRG 204 (333)
Q Consensus 128 ~~lp~~~~~l~~L~~L~l~~-~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~l~~~~~l~~~p~~ 204 (333)
..+|. +..+++|+.|+|++ |.++.+| ..+++|.+|++|+|++ |.+..+|. .|++|++|++|++++|. +..+|..
T Consensus 22 ~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~ 98 (347)
T 2ifg_A 22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWK 98 (347)
T ss_dssp TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCSSC-CSCCCST
T ss_pred CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCCCc-cceeCHH
Confidence 44554 55555555555553 5555544 3455555555555555 34444432 34555555555555554 4444443
Q ss_pred hcCCCCCCccceEEeC
Q 048772 205 IERLTGLRTLSEFVVG 220 (333)
Q Consensus 205 i~~L~~L~~L~~~~~~ 220 (333)
+.....|+.|++.++.
T Consensus 99 ~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTCSCCCCEEECCSSC
T ss_pred HcccCCceEEEeeCCC
Confidence 2222225555554443
No 140
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.80 E-value=5.8e-09 Score=78.10 Aligned_cols=74 Identities=22% Similarity=0.319 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh--hhcchhHhhHHHhhhhccccccchhhHHHHHHh
Q 048772 15 SSAFEEAVERVRRVTAVKAEVDKLTSNLLAIKAVLSDAEQK--QVKEKGIRHWLDQLKEASCDMEDVFDEWITASR 88 (333)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 88 (333)
++..+-+.+++..+.+++++++.++..|..|++++.|++.+ +..++.++.|+.++|+++||++|+++++.+++.
T Consensus 8 ~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 8 PKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344677888999999999999999999999999999988 567899999999999999999999999988764
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.79 E-value=5.6e-10 Score=101.75 Aligned_cols=166 Identities=16% Similarity=0.193 Sum_probs=96.7
Q ss_pred cccccceEeeccccccccCCCcchHhhc-ccccCeeeccCCcCcc--cchhhhccccCcEEeccCCCCCCcCC-hhh---
Q 048772 109 FTCLRALRICGENVWEIGNSKIPKAMKN-LIHLRFLKLSWLRIKE--LPETCCELINLETLEINRCTRLKRLP-QGM--- 181 (333)
Q Consensus 109 ~~~L~~L~l~~~~~~~~~~~~lp~~~~~-l~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~~~~~lp-~~~--- 181 (333)
.+.|+.|++++|.+-..+...+...+.. .++|+.|++++|.++. +..-...+.+|++|++++ +.++... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~-n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQL-NSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCS-SCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCC-CCCCHHHHHHHHHH
Confidence 4668888888887621111112222221 2578888888888753 222334567788888888 4554321 112
Q ss_pred --hcCCCCCeeeccccccccc-----CchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCC
Q 048772 182 --EKLMNLRHLIIMNHVYLEY-----MPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDL 254 (333)
Q Consensus 182 --~~L~~L~~L~l~~~~~l~~-----~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~ 254 (333)
...++|++|++++|. ++. ++..+..+++|++|++.++.....+ .......+...+.|+. |++.+..-.
T Consensus 150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g---~~~L~~~L~~~~~L~~-L~Ls~N~i~ 224 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG---LELLAAQLDRNRQLQE-LNVAYNGAG 224 (372)
T ss_dssp HHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH---HHHHHHHGGGCSCCCE-EECCSSCCC
T ss_pred HHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH---HHHHHHHHhcCCCcCe-EECCCCCCC
Confidence 235678888888886 433 4455677888888888766644300 0011334555667776 777764321
Q ss_pred CCchhhhhhcCcccCCCCceEEEecc
Q 048772 255 ANVDEAKHVDLKEKKNLDRLELWFDN 280 (333)
Q Consensus 255 ~~~~~~~~~~l~~l~~L~~L~l~~~~ 280 (333)
......+...+...++|++|+|++|.
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 11223455556677889999998874
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=1.1e-08 Score=91.96 Aligned_cols=90 Identities=16% Similarity=0.205 Sum_probs=77.0
Q ss_pred hhhhhHhhhcccccceEeec-cccccccCCCcc-hHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCc
Q 048772 100 KELEDVFKQFTCLRALRICG-ENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKR 176 (333)
Q Consensus 100 ~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~ 176 (333)
..+|. +..+++|+.|+|++ |.+ ..+| ..++.+++|++|+|++|.++.+| ..+++|++|++|+|++ |.+..
T Consensus 22 ~~ip~-l~~~~~L~~L~l~~~n~l-----~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~ 94 (347)
T 2ifg_A 22 DSLHH-LPGAENLTELYIENQQHL-----QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALES 94 (347)
T ss_dssp TTTTT-SCSCSCCSEEECCSCSSC-----CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSC
T ss_pred CccCC-CCCCCCeeEEEccCCCCC-----CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-Cccce
Confidence 34666 88889999999996 888 6666 56899999999999999999876 4789999999999999 88999
Q ss_pred CChhhhcCCCCCeeeccccc
Q 048772 177 LPQGMEKLMNLRHLIIMNHV 196 (333)
Q Consensus 177 lp~~~~~L~~L~~L~l~~~~ 196 (333)
+|..+....+|+.|++.+|.
T Consensus 95 ~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 95 LSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSTTTCSCCCCEEECCSSC
T ss_pred eCHHHcccCCceEEEeeCCC
Confidence 99876555559999999887
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=1.9e-08 Score=89.98 Aligned_cols=64 Identities=23% Similarity=0.257 Sum_probs=44.7
Q ss_pred cccccceEeeccccc--cccCC-------------Ccch-Hhhc--------ccccCeeeccCCcCcccc-hhhhccccC
Q 048772 109 FTCLRALRICGENVW--EIGNS-------------KIPK-AMKN--------LIHLRFLKLSWLRIKELP-ETCCELINL 163 (333)
Q Consensus 109 ~~~L~~L~l~~~~~~--~~~~~-------------~lp~-~~~~--------l~~L~~L~l~~~~i~~lp-~~i~~L~~L 163 (333)
+++|++|++++|.+. ..... .+|+ .|.. +++|+.+++.. .++.++ ..+.++.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 788999999998874 11101 2332 3556 78899999988 788887 467888999
Q ss_pred cEEeccCCCCC
Q 048772 164 ETLEINRCTRL 174 (333)
Q Consensus 164 ~~L~l~~~~~~ 174 (333)
+.++++. +.+
T Consensus 127 ~~l~l~~-n~i 136 (329)
T 3sb4_A 127 KICQIRK-KTA 136 (329)
T ss_dssp CEEEBCC-SSC
T ss_pred ceEEcCC-CCc
Confidence 9999887 444
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.62 E-value=1.9e-09 Score=98.19 Aligned_cols=169 Identities=17% Similarity=0.156 Sum_probs=109.9
Q ss_pred ccccCeeeccCCcCcccc-hhhhcc-----ccCcEEeccCCCCCCc--CChhhhcCCCCCeeecccccccccCc-h----
Q 048772 137 LIHLRFLKLSWLRIKELP-ETCCEL-----INLETLEINRCTRLKR--LPQGMEKLMNLRHLIIMNHVYLEYMP-R---- 203 (333)
Q Consensus 137 l~~L~~L~l~~~~i~~lp-~~i~~L-----~~L~~L~l~~~~~~~~--lp~~~~~L~~L~~L~l~~~~~l~~~p-~---- 203 (333)
+++|+.|++++|.++... ..+... .+|+.|++++ +.+.. +..-...+++|++|++++|. ++... .
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLAS-CQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTT-CCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecC-CCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHH
Confidence 568999999999987432 334433 6999999999 44543 11223356789999999997 44322 2
Q ss_pred hh-cCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCC
Q 048772 204 GI-ERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVG 282 (333)
Q Consensus 204 ~i-~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 282 (333)
.+ ...++|++|++.++.....+ .......+...+.|+. |++.+..-.......+...+...++|++|+|++|.+
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~---~~~l~~~L~~~~~L~~-L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i- 223 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAG---VAVLMEGLAGNTSVTH-LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA- 223 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHH---HHHHHHHHHTCSSCCE-EECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC-
T ss_pred HHHhcCCccceeeCCCCCCChHH---HHHHHHHHhcCCCcCE-EeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC-
Confidence 22 35688999999887654300 0112334466777887 888774321112234456777888999999998852
Q ss_pred CCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChh
Q 048772 283 MPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWI 322 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~ 322 (333)
+. .-...+...+.. .++|++|+|++|.+..
T Consensus 224 ----~~---~g~~~l~~~L~~---~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 224 ----GD---TAALALARAARE---HPSLELLHLYFNELSS 253 (372)
T ss_dssp ----CH---HHHHHHHHHHHH---CSSCCEEECTTSSCCH
T ss_pred ----CH---HHHHHHHHHHHh---CCCCCEEeccCCCCCH
Confidence 21 112224555656 7789999999998765
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=2.8e-08 Score=89.91 Aligned_cols=171 Identities=15% Similarity=0.108 Sum_probs=77.5
Q ss_pred hhcccccCeeeccCCcC----------cccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCch
Q 048772 134 MKNLIHLRFLKLSWLRI----------KELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPR 203 (333)
Q Consensus 134 ~~~l~~L~~L~l~~~~i----------~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~ 203 (333)
+.++++|+.|.+.+... ..++..+..+++|+.|++++|..+ .+|. + .+++|++|++..|..-.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 44556666666644321 124445556667777777664222 3333 2 366777777765541111111
Q ss_pred hhc--CCCCCCccceEEeCCCCCcccCcccchhh-h--cCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEe
Q 048772 204 GIE--RLTGLRTLSEFVVGRTGGEHASKVCKLEA-L--KGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWF 278 (333)
Q Consensus 204 ~i~--~L~~L~~L~~~~~~~~~~~~~~~~~~~~~-L--~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 278 (333)
.+. .+++|++|+++......... .....+.. + ..+++|+. |.+.+.+..... .........+++|++|+|++
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~-~~~~~l~~~l~~~~~p~Lr~-L~L~~~~i~~~~-~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFD-GDMNVFRPLFSKDRFPNLKW-LGIVDAEEQNVV-VEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCC-SCGGGTGGGSCTTTCTTCCE-EEEESCTTHHHH-HHHHHHCSSGGGCSEEECCS
T ss_pred HHHHccCCCCcEEEEeccccccccc-hhHHHHHHHHhcCCCCCcCE-EeCCCCCCchHH-HHHHHhCccCCCCCEEECCC
Confidence 222 56777777664321100000 00000111 1 23455665 666543221100 11111123467777777765
Q ss_pred ccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecCh
Q 048772 279 DNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIW 321 (333)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~ 321 (333)
|.. + ..-...++..+.+ +++|+.|++++|.+.
T Consensus 289 n~L-----~---d~G~~~L~~~L~~---l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 289 GVL-----T---DEGARLLLDHVDK---IKHLKFINMKYNYLS 320 (362)
T ss_dssp SCC-----B---HHHHHHHHTTHHH---HTTCSEEECCSBBCC
T ss_pred CCC-----C---hHHHHHHHhhccc---CCcceEEECCCCcCC
Confidence 531 1 1111113444455 667777777766553
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.51 E-value=8.3e-08 Score=86.84 Aligned_cols=167 Identities=16% Similarity=0.125 Sum_probs=103.5
Q ss_pred HhhhcccccceEeecccccc-----ccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCc-CC
Q 048772 105 VFKQFTCLRALRICGENVWE-----IGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKR-LP 178 (333)
Q Consensus 105 ~~~~~~~L~~L~l~~~~~~~-----~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~-lp 178 (333)
....+++|+.|.+.+..... .+...++..+..+++|+.|+++++.-..+|. + .+.+|+.|++..|. +.. ..
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~-l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG-LPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB-CCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC-CChHHH
Confidence 34678899999987643210 1112466667888999999999874234554 3 48899999998743 332 11
Q ss_pred hhhh--cCCCCCeeeccccc-------ccccCchhh--cCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeE
Q 048772 179 QGME--KLMNLRHLIIMNHV-------YLEYMPRGI--ERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLK 247 (333)
Q Consensus 179 ~~~~--~L~~L~~L~l~~~~-------~l~~~p~~i--~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~ 247 (333)
..+. .+++|++|+++.+. .+..+...+ +.+++|++|.+..+.... .....+.+.+.+++|+. |+
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~----~~~~~la~a~~~~~L~~-Ld 285 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN----VVVEMFLESDILPQLET-MD 285 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH----HHHHHHHHCSSGGGCSE-EE
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch----HHHHHHHhCccCCCCCE-EE
Confidence 2333 78999999986321 011222222 357899999998766542 01123333346778887 88
Q ss_pred EcccCCCCC-chhhhhhcCcccCCCCceEEEecc
Q 048772 248 IRMLGDLAN-VDEAKHVDLKEKKNLDRLELWFDN 280 (333)
Q Consensus 248 ~~~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~ 280 (333)
++... +.+ ...++...+..+++|+.|+++.|.
T Consensus 286 Ls~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 286 ISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 86522 211 122445556778999999998774
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=3.5e-07 Score=81.67 Aligned_cols=177 Identities=12% Similarity=0.059 Sum_probs=114.1
Q ss_pred hhHhhh--------cccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccC--
Q 048772 103 EDVFKQ--------FTCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINR-- 170 (333)
Q Consensus 103 ~~~~~~--------~~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~-- 170 (333)
+..|.. +++|+.+++.. .+ ..+++ .|..+++|+.++++.|.+..++ ..+..+.++.++....
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i-----~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~ 159 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KI-----KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSD 159 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TC-----CEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTH
T ss_pred HHHhcccccccccccCCCcEEECCc-cc-----cchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchh
Confidence 456677 89999999998 66 55554 4788999999999999877666 4455555566555433
Q ss_pred ---------------CCCCC---------cCChhh----------------------------hcCCCCCeeeccccccc
Q 048772 171 ---------------CTRLK---------RLPQGM----------------------------EKLMNLRHLIIMNHVYL 198 (333)
Q Consensus 171 ---------------~~~~~---------~lp~~~----------------------------~~L~~L~~L~l~~~~~l 198 (333)
|..+. .+|..+ ..+++|+.+++++|. +
T Consensus 160 ~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i 238 (329)
T 3sb4_A 160 AYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-A 238 (329)
T ss_dssp HHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-C
T ss_pred hhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-c
Confidence 11111 111110 137899999999887 7
Q ss_pred ccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCccccc-ceeEEcccCCCCCchhhhhhcCcccCCCCceEE
Q 048772 199 EYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLR-GLLKIRMLGDLANVDEAKHVDLKEKKNLDRLEL 276 (333)
Q Consensus 199 ~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~-~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 276 (333)
..+|.. +..+++|+++.+..+ .. .-....+..+..|+ . +.+.. ++ .......+.++++|+.|++
T Consensus 239 ~~I~~~aF~~~~~L~~l~l~~n-i~-------~I~~~aF~~~~~L~~~-l~l~~--~l---~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 239 TTIPDFTFAQKKYLLKIKLPHN-LK-------TIGQRVFSNCGRLAGT-LELPA--SV---TAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp CEECTTTTTTCTTCCEEECCTT-CC-------EECTTTTTTCTTCCEE-EEECT--TC---CEECTTTTTTCTTEEEEEE
T ss_pred ceecHhhhhCCCCCCEEECCcc-cc-------eehHHHhhCChhccEE-EEEcc--cc---eEEchhhhhCCccCCEEEe
Confidence 888865 889999999987553 11 11223345556666 5 66654 22 2233467889999999999
Q ss_pred EeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEE
Q 048772 277 WFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKY 315 (333)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l 315 (333)
+.++ ...++. ..+.. +++|+.++.
T Consensus 305 ~~n~-----i~~I~~-------~aF~~---~~~L~~ly~ 328 (329)
T 3sb4_A 305 TGDK-----ITTLGD-------ELFGN---GVPSKLIYK 328 (329)
T ss_dssp CSSC-----CCEECT-------TTTCT---TCCCCEEEC
T ss_pred CCCc-----cCccch-------hhhcC---Ccchhhhcc
Confidence 7663 222222 25566 888998874
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.35 E-value=2.1e-07 Score=76.02 Aligned_cols=118 Identities=15% Similarity=0.108 Sum_probs=82.9
Q ss_pred hhhhHhhhcccccceEeecc-ccccccCCCcchHhhcccccCeeeccCCcCc-----ccchhhhccccCcEEeccCCCCC
Q 048772 101 ELEDVFKQFTCLRALRICGE-NVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-----ELPETCCELINLETLEINRCTRL 174 (333)
Q Consensus 101 ~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~ 174 (333)
.+...+...+.|++|++++| .+-+.+...+...+...++|++|+|++|.+. .+...+...++|++|+|++ +.+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES-NFI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS-SCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC-CcC
Confidence 45566677899999999998 7632222334555677789999999999876 3455666778899999998 556
Q ss_pred Cc-----CChhhhcCCCCCeeec--cccccccc-----CchhhcCCCCCCccceEEeC
Q 048772 175 KR-----LPQGMEKLMNLRHLII--MNHVYLEY-----MPRGIERLTGLRTLSEFVVG 220 (333)
Q Consensus 175 ~~-----lp~~~~~L~~L~~L~l--~~~~~l~~-----~p~~i~~L~~L~~L~~~~~~ 220 (333)
+. +...+...++|++|++ ++|. ++. +...+...++|++|++..+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 54 4556777788999999 6666 332 33445566778887776554
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=8.5e-07 Score=76.46 Aligned_cols=81 Identities=23% Similarity=0.254 Sum_probs=57.6
Q ss_pred hcccccCeeeccCCcCccc---chhhhccccCcEEeccCCCCCCcCChhhhcCC--CCCeeecccccccccCch------
Q 048772 135 KNLIHLRFLKLSWLRIKEL---PETCCELINLETLEINRCTRLKRLPQGMEKLM--NLRHLIIMNHVYLEYMPR------ 203 (333)
Q Consensus 135 ~~l~~L~~L~l~~~~i~~l---p~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~--~L~~L~l~~~~~l~~~p~------ 203 (333)
.++++|+.|+|++|.++.+ |..++.+++|++|+|++ |.+..+ ..+..+. +|+.|++++|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4577888888888887654 46677888888888888 667766 3355555 888888888884444542
Q ss_pred -hhcCCCCCCccceE
Q 048772 204 -GIERLTGLRTLSEF 217 (333)
Q Consensus 204 -~i~~L~~L~~L~~~ 217 (333)
.+..+++|+.|+..
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 25677777777754
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.17 E-value=4.5e-06 Score=76.58 Aligned_cols=104 Identities=14% Similarity=0.224 Sum_probs=49.7
Q ss_pred hHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCChh-h
Q 048772 104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQG-M 181 (333)
Q Consensus 104 ~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~-~ 181 (333)
..|..|++|+.+++..+.+ ..+|........|+.+.+..+ ++.++ ..+.++.+|+.+++.. + +..++.. |
T Consensus 174 ~aF~~c~~L~~l~l~~n~l-----~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~-~-l~~I~~~aF 245 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKI-----TKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE-N-VSTIGQEAF 245 (401)
T ss_dssp STTTTCTTCCEEECTTSCC-----SEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT-T-CCEECTTTT
T ss_pred HHhhCcccCCeeecCCCcc-----eEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC-C-ccCcccccc
Confidence 3455566666666665555 344433323455555555432 44444 3445555666666554 1 3333322 2
Q ss_pred hcCCCCCeeecccccccccCch-hhcCCCCCCccceEE
Q 048772 182 EKLMNLRHLIIMNHVYLEYMPR-GIERLTGLRTLSEFV 218 (333)
Q Consensus 182 ~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~ 218 (333)
.+ .+|+.+.+.++ +..++. .+..+++|+.+.+..
T Consensus 246 ~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 246 RE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp TT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEES
T ss_pred cc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCC
Confidence 22 44455544322 334432 255556666555543
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.01 E-value=1.2e-05 Score=69.33 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=64.7
Q ss_pred hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccc--cCcEEeccCCCCCC-cCCh----
Q 048772 107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELI--NLETLEINRCTRLK-RLPQ---- 179 (333)
Q Consensus 107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~--~L~~L~l~~~~~~~-~lp~---- 179 (333)
.+++.|++|++++|.+..+ ..+|..+..+++|++|+|++|.++.+. .+..+. +|++|+|++ |.+. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l--~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~-Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRL--DDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDG-NSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCC--GGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTT-STTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCCCCCC--ccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccC-CcCccccCcchhH
Confidence 6789999999999998322 245567789999999999999998773 456666 999999999 5454 4552
Q ss_pred ---hhhcCCCCCeeecc
Q 048772 180 ---GMEKLMNLRHLIIM 193 (333)
Q Consensus 180 ---~~~~L~~L~~L~l~ 193 (333)
.+..+++|+.||-.
T Consensus 243 ~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHCTTCCEESSC
T ss_pred HHHHHHHCcccCeECCc
Confidence 36789999999753
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.97 E-value=3.3e-06 Score=67.81 Aligned_cols=85 Identities=9% Similarity=0.089 Sum_probs=52.4
Q ss_pred cccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCC-hhhhcC----CCCCeeecccccccccCc-hhhcCCCC
Q 048772 138 IHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLP-QGMEKL----MNLRHLIIMNHVYLEYMP-RGIERLTG 210 (333)
Q Consensus 138 ~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp-~~~~~L----~~L~~L~l~~~~~l~~~p-~~i~~L~~ 210 (333)
..|+.||+++|.++.. -..+..+++|+.|+|++|..++.-- ..+..+ ++|++|++++|..++.-- ..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4688888888876632 2456778888888888877665411 123333 357777777776444321 22556666
Q ss_pred CCccceEEeCCC
Q 048772 211 LRTLSEFVVGRT 222 (333)
Q Consensus 211 L~~L~~~~~~~~ 222 (333)
|++|++.++...
T Consensus 141 L~~L~L~~c~~I 152 (176)
T 3e4g_A 141 LKYLFLSDLPGV 152 (176)
T ss_dssp CCEEEEESCTTC
T ss_pred CCEEECCCCCCC
Confidence 777766666543
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.85 E-value=9.4e-06 Score=66.06 Aligned_cols=94 Identities=18% Similarity=0.104 Sum_probs=71.9
Q ss_pred hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcc-----cchhhhccccCcEEec--cCCCCC
Q 048772 102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKE-----LPETCCELINLETLEI--NRCTRL 174 (333)
Q Consensus 102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l--~~~~~~ 174 (333)
+...+...++|++|++++|.+-+.+...+...+...+.|++|++++|.|.. +...+...++|++|++ ++ +.+
T Consensus 57 l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i 135 (185)
T 1io0_A 57 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQS-QPL 135 (185)
T ss_dssp HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCS-SCC
T ss_pred HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCC-CCC
Confidence 445566778999999999998332223355566777899999999999873 5677788889999999 66 556
Q ss_pred Cc-----CChhhhcCCCCCeeeccccc
Q 048772 175 KR-----LPQGMEKLMNLRHLIIMNHV 196 (333)
Q Consensus 175 ~~-----lp~~~~~L~~L~~L~l~~~~ 196 (333)
+. +...+...++|++|++++|.
T Consensus 136 ~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 136 GNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 53 44556777999999999986
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.77 E-value=0.00013 Score=66.83 Aligned_cols=74 Identities=12% Similarity=0.250 Sum_probs=34.6
Q ss_pred ccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchh-hcCCCCCCccce
Q 048772 139 HLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSE 216 (333)
Q Consensus 139 ~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~ 216 (333)
.|+.+.+.. .++.++ ..+.++.+|+.++++. +.+..+|.......+|+.+.+.++ +..++.. +..+++|+.+.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence 455555543 344444 3445555555555554 445555444333445555555432 3334322 444445544443
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.69 E-value=4.1e-05 Score=61.37 Aligned_cols=36 Identities=11% Similarity=0.263 Sum_probs=21.3
Q ss_pred ccCcEEeccCCCCCCcC-ChhhhcCCCCCeeecccccc
Q 048772 161 INLETLEINRCTRLKRL-PQGMEKLMNLRHLIIMNHVY 197 (333)
Q Consensus 161 ~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~l~~~~~ 197 (333)
.+|+.||+++|. ++.. -..+.++++|++|++++|..
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ 97 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHY 97 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTT
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCc
Confidence 468888888855 4421 12345566666666666653
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.76 E-value=0.013 Score=44.22 Aligned_cols=31 Identities=23% Similarity=0.147 Sum_probs=14.8
Q ss_pred cCeeeccCCcCcccch-hhhccccCcEEeccC
Q 048772 140 LRFLKLSWLRIKELPE-TCCELINLETLEINR 170 (333)
Q Consensus 140 L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~ 170 (333)
|++|+|++|.|+.+|. .+..+.+|++|+|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecC
Confidence 4455555555554442 234444455555444
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.57 E-value=0.013 Score=44.23 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=42.3
Q ss_pred CeeeccCCcCc--ccchhhhccccCcEEeccCCCCCCcCChh-hhcCCCCCeeeccccc
Q 048772 141 RFLKLSWLRIK--ELPETCCELINLETLEINRCTRLKRLPQG-MEKLMNLRHLIIMNHV 196 (333)
Q Consensus 141 ~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~l~~~~ 196 (333)
..++.+++.++ .+|..+. .+|++|+|++ |.++.+|.. |..+++|+.|++.+|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 46777787777 8885432 4689999999 889999875 6789999999999886
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.20 E-value=0.015 Score=47.26 Aligned_cols=93 Identities=17% Similarity=0.084 Sum_probs=56.3
Q ss_pred hhhHhhhcccccceEeecc-ccccccCCCcchHhhcccccCeeeccCCcCc-----ccchhhhccccCcEEeccCCCCCC
Q 048772 102 LEDVFKQFTCLRALRICGE-NVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-----ELPETCCELINLETLEINRCTRLK 175 (333)
Q Consensus 102 ~~~~~~~~~~L~~L~l~~~-~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~ 175 (333)
+..++.+-+.|+.|+++++ .+-+.+...+-..+..-+.|+.|+|++|.+. .+.+.+..=+.|++|+|+. +.++
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFLT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBCC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcCC
Confidence 3444555678888998875 5522111234445666678888888888865 3444555556788888887 5554
Q ss_pred c-----CChhhhcCCCCCeeecccc
Q 048772 176 R-----LPQGMEKLMNLRHLIIMNH 195 (333)
Q Consensus 176 ~-----lp~~~~~L~~L~~L~l~~~ 195 (333)
. +-+.+..=+.|++|++++|
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCC
Confidence 2 2222333345677776654
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.55 E-value=0.075 Score=48.03 Aligned_cols=126 Identities=13% Similarity=0.115 Sum_probs=71.2
Q ss_pred HhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hhhcCCCCCeeecccccccccCchh-hcCCC
Q 048772 133 AMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GMEKLMNLRHLIIMNHVYLEYMPRG-IERLT 209 (333)
Q Consensus 133 ~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~ 209 (333)
.+..+..|+.+.+..+. ..+. ..+.++..|+.+.+.. .+..++. .|.++.+|+.+.+..+ +..++.. +..++
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence 45667778877776543 3343 4566778888888864 4666664 3677888888888654 5566543 77888
Q ss_pred CCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEec
Q 048772 210 GLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFD 279 (333)
Q Consensus 210 ~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 279 (333)
+|+.+.+-. .... -.-..+.++++|+. +.+.+. ......+.....|+.+.+..+
T Consensus 335 ~L~~i~ip~-sv~~-------I~~~aF~~C~~L~~-i~~~~~-------~~~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 335 QLERIAIPS-SVTK-------IPESAFSNCTALNN-IEYSGS-------RSQWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCCEEEECT-TCCB-------CCGGGGTTCTTCCE-EEESSC-------HHHHHTCBCCCCC--------
T ss_pred CCCEEEECc-ccCE-------EhHhHhhCCCCCCE-EEECCc-------eeehhhhhccCCCCEEEeCCC
Confidence 888877631 1111 11233455566665 666541 112245666777887777533
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.10 E-value=0.087 Score=47.19 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=57.9
Q ss_pred HhhhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hh
Q 048772 105 VFKQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GM 181 (333)
Q Consensus 105 ~~~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~ 181 (333)
.+..+..|+.+.+..+ + ..++ ..+..+..|+.+.+..+ ++.+. ..+.++.+|+.+.+.. .+..++. .+
T Consensus 212 ~f~~~~~l~~i~~~~~-~-----~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF 282 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-V-----TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLC 282 (379)
T ss_dssp TTTTCSSCSEEECCTT-C-----CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTT
T ss_pred ccccccccceeeeccc-e-----eEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceecccccc
Confidence 3445566666665433 2 2222 23455666777776544 45554 3455666777777654 2555543 35
Q ss_pred hcCCCCCeeecccccccccCchh-hcCCCCCCccce
Q 048772 182 EKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSE 216 (333)
Q Consensus 182 ~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~ 216 (333)
.++.+|+.+.+.++. +..++.. +.++.+|+.+.+
T Consensus 283 ~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 283 SGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccc-cceehhhhhcCCCCCCEEEc
Confidence 666777777776554 4555533 666777776665
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.07 E-value=0.058 Score=43.80 Aligned_cols=95 Identities=9% Similarity=0.046 Sum_probs=65.3
Q ss_pred hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-----ccchhhhccccCcEEeccCCC--CC
Q 048772 102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-----ELPETCCELINLETLEINRCT--RL 174 (333)
Q Consensus 102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~--~~ 174 (333)
+-..+..-+.|+.|+|++|.+-+.+...+...+..-+.|+.|+|++|.|. .+-+.+..=+.|+.|+|++|. .+
T Consensus 62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i 141 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL 141 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCc
Confidence 44455566889999999999855444566667777889999999999986 234445445679999998632 23
Q ss_pred C-----cCChhhhcCCCCCeeeccccc
Q 048772 175 K-----RLPQGMEKLMNLRHLIIMNHV 196 (333)
Q Consensus 175 ~-----~lp~~~~~L~~L~~L~l~~~~ 196 (333)
. .+-..+..=++|+.|+++.+.
T Consensus 142 g~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 142 GNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3 122334455678888776553
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.91 E-value=0.073 Score=48.08 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=83.1
Q ss_pred hHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hh
Q 048772 104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GM 181 (333)
Q Consensus 104 ~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~ 181 (333)
..+..+..++.+.+..+.. .--...+..+..++......+. +| ..+..+.+|+.+.+.. + ++.++. .|
T Consensus 247 ~~f~~~~~l~~~~~~~~~~-----~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~-~-i~~I~~~aF 316 (394)
T 4fs7_A 247 SVFYGCTDLESISIQNNKL-----RIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLD-S-VKFIGEEAF 316 (394)
T ss_dssp STTTTCSSCCEEEECCTTC-----EECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECT-T-CCEECTTTT
T ss_pred ccccccccceeEEcCCCcc-----eeeccccccccccceeccCcee---ecccccccccccccccccc-c-cceechhhh
Confidence 3566778888888876543 1112345667777777665543 33 3456777888888865 2 566654 46
Q ss_pred hcCCCCCeeecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhh
Q 048772 182 EKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEA 260 (333)
Q Consensus 182 ~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~ 260 (333)
.++.+|+.+++.++ +..++.. +.++++|+.+.+... ... -.-..+..+.+|+. +.+.. ....
T Consensus 317 ~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~-------I~~~aF~~C~~L~~-i~lp~------~~~~ 379 (394)
T 4fs7_A 317 ESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRK-------IGANAFQGCINLKK-VELPK------RLEQ 379 (394)
T ss_dssp TTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCE-------ECTTTBTTCTTCCE-EEEEG------GGGG
T ss_pred cCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccE-------ehHHHhhCCCCCCE-EEECC------CCEE
Confidence 77888888888654 5666543 778888887776321 111 11123444455554 55543 1122
Q ss_pred hhhcCcccCCCCce
Q 048772 261 KHVDLKEKKNLDRL 274 (333)
Q Consensus 261 ~~~~l~~l~~L~~L 274 (333)
....+.++++|+.+
T Consensus 380 ~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 380 YRYDFEDTTKFKWI 393 (394)
T ss_dssp GGGGBCTTCEEEEE
T ss_pred hhheecCCCCCcEE
Confidence 23456677766643
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.61 E-value=0.064 Score=48.47 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=73.7
Q ss_pred hHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hh
Q 048772 104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GM 181 (333)
Q Consensus 104 ~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~ 181 (333)
..|..+..++.+......+ .. ..+..+..|+.+.+..+ ++.++ ..+.++.+|+.+++.. .+..++. .|
T Consensus 270 ~~F~~~~~l~~~~~~~~~i-----~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF 339 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVIV-----PE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSF 339 (394)
T ss_dssp CTTTTCTTCCEEEECSSEE-----CT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTT
T ss_pred cccccccccceeccCceee-----cc--ccccccccccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhc
Confidence 3456677777776655433 11 34667888999988754 67776 4678899999999975 3677754 57
Q ss_pred hcCCCCCeeecccccccccCchh-hcCCCCCCccceE
Q 048772 182 EKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEF 217 (333)
Q Consensus 182 ~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~ 217 (333)
.++.+|+.+.+..+ +..++.. +..+++|+.+.+.
T Consensus 340 ~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 340 RGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred cCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEEC
Confidence 88999999999765 5666644 8899999988874
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.72 E-value=0.5 Score=42.51 Aligned_cols=128 Identities=9% Similarity=0.082 Sum_probs=76.3
Q ss_pred hhhhccccCcEEeccCCCCCCcCC-hhhhcCCCCCeeecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccc
Q 048772 155 ETCCELINLETLEINRCTRLKRLP-QGMEKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCK 232 (333)
Q Consensus 155 ~~i~~L~~L~~L~l~~~~~~~~lp-~~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~ 232 (333)
..+.++.+|+.+.+.. + +..++ ..+.++.+|+.+.+... +..++.. +..+.+|+.+.+... ... -.
T Consensus 259 ~aF~~c~~L~~i~lp~-~-~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~-------I~ 326 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPD-S-VVSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQ-------IL 326 (394)
T ss_dssp TTTTTCSSCCEEECCT-T-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCE-------EC
T ss_pred ceeeecccccEEeccc-c-cceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccE-------eh
Confidence 3567788899999875 3 33443 34778899999999653 6777755 888999998876321 110 11
Q ss_pred hhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCcee
Q 048772 233 LEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHP 312 (333)
Q Consensus 233 ~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~ 312 (333)
-..+..+++|+. +.+.. ++. ......+.++++|+.+.+..+ .. ....... +.+|+.
T Consensus 327 ~~aF~~C~~L~~-i~ip~--sv~---~I~~~aF~~C~~L~~i~~~~~-----------~~----~~~~~~~---~~~L~~ 382 (394)
T 4gt6_A 327 DDAFAGCEQLER-IAIPS--SVT---KIPESAFSNCTALNNIEYSGS-----------RS----QWNAIST---DSGLQN 382 (394)
T ss_dssp TTTTTTCTTCCE-EEECT--TCC---BCCGGGGTTCTTCCEEEESSC-----------HH----HHHTCBC---CCCC--
T ss_pred HhHhhCCCCCCE-EEECc--ccC---EEhHhHhhCCCCCCEEEECCc-----------ee----ehhhhhc---cCCCCE
Confidence 123445555665 66642 222 223457889999999999755 22 2345555 788999
Q ss_pred eEEeee
Q 048772 313 LKYSRY 318 (333)
Q Consensus 313 L~l~~~ 318 (333)
+.+..+
T Consensus 383 i~i~~~ 388 (394)
T 4gt6_A 383 LPVAPG 388 (394)
T ss_dssp ------
T ss_pred EEeCCC
Confidence 988654
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.28 E-value=0.38 Score=42.89 Aligned_cols=104 Identities=18% Similarity=0.256 Sum_probs=77.7
Q ss_pred hhHhhhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-
Q 048772 103 EDVFKQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ- 179 (333)
Q Consensus 103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~- 179 (333)
...|..+..|+.+.+..+ + ..++ ..+..+..|+.+.+..+ +..++ ..+.++.+|+.+.+.. +.++.++.
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v-----~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~ 304 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-V-----TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDN-SAIETLEPR 304 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-C-----CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECC-TTCCEECTT
T ss_pred cccccCCccceEEEcCCC-c-----cEeCccccceeehhcccccccc-ceeccccccccccccccccccc-cccceehhh
Confidence 345677888988888654 3 3333 34677888999988654 66676 4678899999999987 66777764
Q ss_pred hhhcCCCCCeeecccccccccCchh-hcCCCCCCccce
Q 048772 180 GMEKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSE 216 (333)
Q Consensus 180 ~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~ 216 (333)
.|.++.+|+.+.+..+ +..++.. +.++++|+.+.+
T Consensus 305 aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 305 VFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred hhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence 4788999999999754 5667644 888999998876
Done!