BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048774
         (519 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
          Length = 1263

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 101/241 (41%), Gaps = 53/241 (21%)

Query: 126 LLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVA-KIMGTLPAY------QLK 178
           LL+LDDVW    D WV     L A     +I+++TR+  V   +MG  P Y       L 
Sbjct: 245 LLILDDVW----DSWV-----LKAFDSQCQILLTTRDKSVTDSVMG--PKYVVPVESSLG 293

Query: 179 KLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLLRGEHDR-- 236
           K    + L++F               L E    I+ +C G PL    +G LLR   +R  
Sbjct: 294 KEKGLEILSLFVN--------MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWE 345

Query: 237 --------REWERVLSSKIWELPEERCRIIPALAVSYYYLPPTLKQCFAYCSLLPKDYEF 288
                   ++++R+  S  ++       +  A+++S   L   +K  +   S+L KD + 
Sbjct: 346 YYLKQLQNKQFKRIRKSSSYDYEA----LDEAMSISVEMLREDIKDYYTDLSILQKDVKV 401

Query: 289 EEEEIILLWCASGFLDHKEVENPSEDLGRDFFKELRSRS-FFQQSATDASRFVMHDLIND 347
             + + +LW     ++ +EVE        D  +E  ++S  F      + R+ +HDL  D
Sbjct: 402 PTKVLCILW----DMETEEVE--------DILQEFVNKSLLFCDRNGKSFRYYLHDLQVD 449

Query: 348 L 348
            
Sbjct: 450 F 450


>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
 pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
 pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
 pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
          Length = 591

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 101/241 (41%), Gaps = 53/241 (21%)

Query: 126 LLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVA-KIMGTLPAY------QLK 178
           LL+LDDVW    D WV     L A     +I+++TR+  V   +MG  P Y       L 
Sbjct: 239 LLILDDVW----DSWV-----LKAFDSQCQILLTTRDKSVTDSVMG--PKYVVPVESSLG 287

Query: 179 KLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLLRGEHDR-- 236
           K    + L++F               L E    I+ +C G PL    +G LLR   +R  
Sbjct: 288 KEKGLEILSLFVN--------MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWE 339

Query: 237 --------REWERVLSSKIWELPEERCRIIPALAVSYYYLPPTLKQCFAYCSLLPKDYEF 288
                   ++++R+  S  ++       +  A+++S   L   +K  +   S+L KD + 
Sbjct: 340 YYLKQLQNKQFKRIRKSSSYDYEA----LDEAMSISVEMLREDIKDYYTDLSILQKDVKV 395

Query: 289 EEEEIILLWCASGFLDHKEVENPSEDLGRDFFKELRSRS-FFQQSATDASRFVMHDLIND 347
             + + +LW     ++ +EVE        D  +E  ++S  F      + R+ +HDL  D
Sbjct: 396 PTKVLCILW----DMETEEVE--------DILQEFVNKSLLFCDRNGKSFRYYLHDLQVD 443

Query: 348 L 348
            
Sbjct: 444 F 444


>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
          Length = 1249

 Score = 41.6 bits (96), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 47/238 (19%)

Query: 126 LLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVA-KIMGTLPAYQLKKLSYND 184
           LL+LDDVW    D WV     L A     +I+++TR+  V   +MG  P + +   S   
Sbjct: 239 LLILDDVW----DPWV-----LKAFDNQCQILLTTRDKSVTDSVMG--PKHVVPVES--- 284

Query: 185 CLAIFAQHSLGTRDFSSHMSLEEI---GRKIVTKCDGLPLAAQTLGGLLRGEHDR----- 236
              +  +  L       +M  E++      I+ +C G PL    +G LLR   +R     
Sbjct: 285 --GLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYL 342

Query: 237 -----REWERVLSSKIWELPEERCRIIPALAVSYYYLPPTLKQCFAYCSLLPKDYEFEEE 291
                ++++R+  S  ++       +  A+++S   L   +K  +   S+L KD +   +
Sbjct: 343 RQLQNKQFKRIRKSSSYDYEA----LDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTK 398

Query: 292 EIILLWCASGFLDHKEVENPSEDLGRDFFKELRSRS-FFQQSATDASRFVMHDLINDL 348
            + +LW     L+ +EVE        D  +E  ++S  F      +  + +HDL  D 
Sbjct: 399 VLCVLW----DLETEEVE--------DILQEFVNKSLLFCNRNGKSFCYYLHDLQVDF 444


>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
           Murine Apaf-1
          Length = 1256

 Score = 38.9 bits (89), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 100/238 (42%), Gaps = 47/238 (19%)

Query: 126 LLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVA-KIMGTLPAYQLKKLSYND 184
           LL+LDDVW    D WV     L A     +I+++T +  V   +MG  P + +   S   
Sbjct: 246 LLILDDVW----DPWV-----LKAFDNQCQILLTTSDKSVTDSVMG--PKHVVPVES--- 291

Query: 185 CLAIFAQHSLGTRDFSSHMSLEEI---GRKIVTKCDGLPLAAQTLGGLLRGEHDR----- 236
              +  +  L       +M  E++      I+ +C G PL    +G LLR   +R     
Sbjct: 292 --GLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYL 349

Query: 237 -----REWERVLSSKIWELPEERCRIIPALAVSYYYLPPTLKQCFAYCSLLPKDYEFEEE 291
                ++++R+  S  ++       +  A+++S   L   +K  +   S+L KD +   +
Sbjct: 350 RQLQNKQFKRIRKSSSYDYEA----LDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTK 405

Query: 292 EIILLWCASGFLDHKEVENPSEDLGRDFFKELRSRS-FFQQSATDASRFVMHDLINDL 348
            + +LW     L+ +EVE        D  +E  ++S  F      +  + +HDL  D 
Sbjct: 406 VLCVLW----DLETEEVE--------DILQEFVNKSLLFCNRNGKSFCYYLHDLQVDF 451


>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 37.7 bits (86), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 37/79 (46%)

Query: 419 PSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLH 478
           P    + F+L  L+  ++    + ELPD+      L  L L+R  ++ LP S++ L  L 
Sbjct: 94  PQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLR 153

Query: 479 TLLLEDCRRLKKLCAAMGN 497
            L +  C  L +L   + +
Sbjct: 154 ELSIRACPELTELPEPLAS 172



 Score = 33.5 bits (75), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 434 FSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCA 493
             LR   + + PD    L +L+H  +    +  LP++  +   L TL L     L+ L A
Sbjct: 86  LELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPA 144

Query: 494 AMGNLIKLHHLNNSNTDSLEEMP 516
           ++ +L +L  L+      L E+P
Sbjct: 145 SIASLNRLRELSIRACPELTELP 167


>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
 pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
          Length = 768

 Score = 36.2 bits (82), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 19/170 (11%)

Query: 314 DLGRDFFKELRSRSFFQQSATDASRFVMHD----LINDLARWAAGETYFTLEYTSEVNKQ 369
           DL  + F      + F+QS   A+ F+       + ND  +         LE+    ++Q
Sbjct: 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603

Query: 370 --QCFSRNLCHL-SYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELF 426
             +  +RN C++ S + G           +D      FL  M  N L GY    I  E+ 
Sbjct: 604 LNRLSTRNPCNITSRVYGG-----HTSPTFDNNGSMMFLD-MSYNMLSGY----IPKEIG 653

Query: 427 KLQRLRIFSLRGYHIS-ELPDSVGDLRYLRHLNLSRTEIKT-LPESVSKL 474
            +  L I +L    IS  +PD VGDLR L  L+LS  ++   +P+++S L
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703


>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
           Ectodomain
 pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
           Brassinolide
          Length = 772

 Score = 36.2 bits (82), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 19/170 (11%)

Query: 314 DLGRDFFKELRSRSFFQQSATDASRFVMHD----LINDLARWAAGETYFTLEYTSEVNKQ 369
           DL  + F      + F+QS   A+ F+       + ND  +         LE+    ++Q
Sbjct: 541 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 600

Query: 370 --QCFSRNLCHL-SYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELF 426
             +  +RN C++ S + G           +D      FL  M  N L GY    I  E+ 
Sbjct: 601 LNRLSTRNPCNITSRVYGG-----HTSPTFDNNGSMMFLD-MSYNMLSGY----IPKEIG 650

Query: 427 KLQRLRIFSLRGYHIS-ELPDSVGDLRYLRHLNLSRTEIKT-LPESVSKL 474
            +  L I +L    IS  +PD VGDLR L  L+LS  ++   +P+++S L
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700


>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
          Length = 727

 Score = 35.4 bits (80), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 420 SILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHT 479
           +I   +FK   L    L G  ++ELP  + +L  LR L+LS   + +LP  +   + L  
Sbjct: 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297

Query: 480 LLLEDCRRLKKLCAAMGNLIKLHHL 504
               D   +  L    GNL  L  L
Sbjct: 298 FYFFD-NMVTTLPWEFGNLCNLQFL 321



 Score = 28.5 bits (62), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 30/71 (42%)

Query: 413 LDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVS 472
           L+G     +  E+  L  LR+  L    ++ LP  +G    L++       + TLP    
Sbjct: 254 LNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFG 313

Query: 473 KLYNLHTLLLE 483
            L NL  L +E
Sbjct: 314 NLCNLQFLGVE 324


>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
          Length = 477

 Score = 35.0 bits (79), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 9/76 (11%)

Query: 420 SILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESV-SKLYNLH 478
           S+L EL +LQ +++    G      P +   L YLR LN+S  ++ TL ESV   + NL 
Sbjct: 266 SMLHELLRLQEIQLVG--GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323

Query: 479 TLLLE------DCRRL 488
           TL+L+      DCR L
Sbjct: 324 TLILDSNPLACDCRLL 339


>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
 pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
          Length = 272

 Score = 33.1 bits (74), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 393 EKLYDIQHLR--TFLPVMLSNSLDGYLAPSILTELF-KLQRLRIFSLRGYHISELPDSVG 449
            KL+DI  L+  T L  ++   L G    S+   +F KL  L+   L    +  LPD V 
Sbjct: 73  NKLHDISALKELTNLTYLI---LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129

Query: 450 D-LRYLRHLNLSRTEIKTLPESV-SKLYNLHTL 480
           D L  L +LNL+  ++++LP+ V  KL NL  L
Sbjct: 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162


>pdb|4E4G|A Chain A, Crystal Structure Of Putative Methylmalonate-Semialdehyde
           Dehydrogenase From Sinorhizobium Meliloti 1021
 pdb|4E4G|B Chain B, Crystal Structure Of Putative Methylmalonate-Semialdehyde
           Dehydrogenase From Sinorhizobium Meliloti 1021
 pdb|4E4G|C Chain C, Crystal Structure Of Putative Methylmalonate-Semialdehyde
           Dehydrogenase From Sinorhizobium Meliloti 1021
 pdb|4E4G|D Chain D, Crystal Structure Of Putative Methylmalonate-Semialdehyde
           Dehydrogenase From Sinorhizobium Meliloti 1021
 pdb|4E4G|E Chain E, Crystal Structure Of Putative Methylmalonate-Semialdehyde
           Dehydrogenase From Sinorhizobium Meliloti 1021
 pdb|4E4G|F Chain F, Crystal Structure Of Putative Methylmalonate-Semialdehyde
           Dehydrogenase From Sinorhizobium Meliloti 1021
 pdb|4E4G|G Chain G, Crystal Structure Of Putative Methylmalonate-Semialdehyde
           Dehydrogenase From Sinorhizobium Meliloti 1021
 pdb|4E4G|H Chain H, Crystal Structure Of Putative Methylmalonate-Semialdehyde
           Dehydrogenase From Sinorhizobium Meliloti 1021
          Length = 521

 Score = 32.0 bits (71), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 10/72 (13%)

Query: 157 IVSTRNHEVAKIMGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKC 216
           +V  RN+E A    +LP     K  Y + +AI+ +     RDF+S +++  +G  +    
Sbjct: 414 VVRARNYEEAL---SLP----XKHEYGNGVAIYTRDGDAARDFASRINIGXVGVNVPIP- 465

Query: 217 DGLPLAAQTLGG 228
             +PLA  + GG
Sbjct: 466 --VPLAYHSFGG 475


>pdb|1BOU|B Chain B, Three-Dimensional Structure Of Ligab
 pdb|1BOU|D Chain D, Three-Dimensional Structure Of Ligab
 pdb|1B4U|B Chain B, Protocatechuate 4,5-Dioxygenase (Ligab) In Complex With
           Protocatechuate (Pca)
 pdb|1B4U|D Chain D, Protocatechuate 4,5-Dioxygenase (Ligab) In Complex With
           Protocatechuate (Pca)
          Length = 302

 Score = 32.0 bits (71), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 245 SKIWELPEE-RCRIIPALAVSYYYLPPTLKQCFAYCSLLPKDYE-FEEEEIILLWCASGF 302
           S I+  PEE  C++IP       Y PP+ K+CFA    +    E F E+  + +W   G 
Sbjct: 134 SMIFGEPEEWPCKVIPFPVNVVTYPPPSGKRCFALGDSIRAAVESFPEDLNVHVWGTGGM 193


>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
           Receptors B59
 pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
           Receptors B59
          Length = 208

 Score = 30.4 bits (67), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 50/115 (43%), Gaps = 9/115 (7%)

Query: 371 CFSRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQR 430
           C SR  C  S    +C    R      I    T+L  + +NSL   L   +  EL  L +
Sbjct: 1   CPSR--CSCSGTTVECYSQGRTSVPTGIPAQTTYLD-LETNSLKS-LPNGVFDELTSLTQ 56

Query: 431 LRIFSLRGYHISELPDSV-GDLRYLRHLNLSRTEIKTLPESV-SKLYNLHTLLLE 483
           L    L G  +  LP+ V   L  L +LNLS  ++++LP  V  KL  L  L L 
Sbjct: 57  LY---LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108


>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
          Length = 169

 Score = 30.0 bits (66), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 454 LRHLNLSRTEIKTLP--ESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKL 501
           L+HLNLS  +IK L   E + KL NL +L L +C  +  L A   N+ KL
Sbjct: 95  LKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNAYRENVFKL 143


>pdb|2HXV|A Chain A, Crystal Structure Of A
           Diaminohydroxyphosphoribosylaminopyrimidine Deaminase
           5-Amino-6-(5-Phosphoribosylamino)uracil Reductase
           (Tm1828) From Thermotoga Maritima At 1.80 A Resolution
          Length = 360

 Score = 28.9 bits (63), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 242 VLSSKIWELPEERCRIIPALAVSYYYLPPTLKQCFAYC---SLLPKDYEFEEEEIILLWC 298
           VLS K++ + EE  R+I          PP +++  + C   S+L   YE + + +++   
Sbjct: 236 VLSGKVFRVFEENARVIVFTESEEAEYPPHVEKALSDCSVESILRNLYERDIDSVLVEGG 295

Query: 299 A---SGFLDHKEV 308
           +   S FLDH +V
Sbjct: 296 SKVFSEFLDHADV 308


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,705,756
Number of Sequences: 62578
Number of extensions: 571227
Number of successful extensions: 1272
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1261
Number of HSP's gapped (non-prelim): 35
length of query: 519
length of database: 14,973,337
effective HSP length: 103
effective length of query: 416
effective length of database: 8,527,803
effective search space: 3547566048
effective search space used: 3547566048
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)